Publications - Published papers

Please find below publications of our group. Currently, we list 501 papers. Some of the publications are in collaboration with the group of Sonja Prohaska and are also listed in the publication list for her individual group. Access to published papers (access) is restricted to our local network and chosen collaborators. If you have problems accessing electronic information, please let us know:

©NOTICE: All papers are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

Bioinformatics methods for the comparative analysis of metazoan mitochondrial genome sequences

Bernt M, Braband A, Middendorf M, Misof B, Rota-Stabelli O, Stadler PF


PREPRINT 13-011: [ PDF ]


Mol. Phylog. Evol. 69:320–327 (2013)


In this review we provide an overview of various bioinformatics methods and tools for the analysis of metazoan mitochondrial genomes. We compare available dedicated databases and present current tools for accurate genome annotation, identification of protein coding genes, and determination of tRNA and rRNA models.We also evaluate various tools and models for phylogenetic tree inference using gene order or sequence based data. As for gene order based methods, we compare rearrangement based and ge


Bioinformatics, Gene annotation, Genome rearrangements, Mitochondria, Substitution models