Publications - Published papers

Please find below publications of our group. Currently, we list 508 papers. Some of the publications are in collaboration with the group of Sonja Prohaska and are also listed in the publication list for her individual group. Access to published papers (access) is restricted to our local network and chosen collaborators. If you have problems accessing electronic information, please let us know:

©NOTICE: All papers are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

A Visual Cross-Database Comparison of Metabolic Networks

Markus Rohrschneider, Peter F. Stadler, Gerik Scheuermann


PREPRINT 12-032: [ PDF ]


Advances in Visual Computing Lecture Notes in Computer Science 7432:678-687 (2012)


Bioinformatics research in general and the exploration of metabolic networks in particular rely on processing data from different sources. Visualization in this context supports the exploration process and helps to evaluate the data quality of the used sources. In this work, we extend our existing metabolic network visualization toolbox and hereby address the fundamental task of comparing metabolic networks from two major bioinformatics resources for the purpose of data validation and verification. This is done on different levels of granularity by providing an overview on retrieval rates of chemical compounds and reactions per pathway on the one hand, as well as giving a detailed insight into the differences in the biochemical reaction networks on the other.