Publications - Published papers

Please find below publications of our group. Currently, we list 508 papers. Some of the publications are in collaboration with the group of Sonja Prohaska and are also listed in the publication list for her individual group. Access to published papers (access) is restricted to our local network and chosen collaborators. If you have problems accessing electronic information, please let us know:

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Folding RNA/DNA hybrid duplexes

Ronny Lorenz, Ivo L Hofacker, Stephan H Bernhart

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Bioinformatics 28: 2530-2531 (2012)

Abstract


<b>Motivation</b>: While there are numerous programs that can predict RNA or DNA secondary structures, a program that predicts RNA/DNA hetero-dimers is still missing. The lack of easy to use tools for predicting their structure may be in part responsible for the small number of reports of biologically relevant RNA/DNA hetero-dimers.<br/> <b>Results</b>: We present here an extension to the widely used ViennaRNA Package [6] for the prediction of the structure of RNA/DNA hetero-dimers.br/> <b>Availability</b>: http://www.tbi.univie.ac.at/˜ronny/RNA/vrna2.html