Publications - Published papers

Please find below publications of our group. Currently, we list 496 papers. Some of the publications are in collaboration with the group of Sonja Prohaska and are also listed in the publication list for her individual group. Access to published papers (access) is restricted to our local network and chosen collaborators. If you have problems accessing electronic information, please let us know:

©NOTICE: All papers are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

<tt>FRANz</tt>: Fast reconstruction of wild pedigrees

Markus Riester, Peter F. Stadler, Konstantin Klemm

Download


PREPRINT 08-011: [ PDF ]  [ Software ]
[ Publishers's page ]  paperID

Status:


Bioinformatics 25:2134-2139 (2009)

Abstract


We present a software package for pedigree reconstruction in natural populations using co-dominant genomic markers such as microsatellites and single nucleotide polymorphisms (SNPs). If available, the algorithm makes use of prior information such as known relationships (sub-pedigrees) or the age and sex of individuals. Statistical confidence is estimated by Markov Chain Monte Carlo (MCMC) sampling. The accuracy of the algorithm is demonstrated for simulated data as well as an empirical dataset with known pedigree. The parentage inference is robust even in the presence of genotyping errors.

Keywords


pedigrees, co-dominant markers, maximum likelihood, sampling

Note


Earlier version appeared in Proceedings of the German Conference on Bioinformatics 2008, Lecture Notes in Informatics P136: 168-177 (2008).