Publications - Published papers

Please find below publications of our group. Currently, we list 299 papers. Some of the publications are in collaboration with the group of Sonja Prohaska and are also listed in the publication list for her individual group. Access to published papers (access) is restricted to our local network and chosen collaborators. If you have problems accessing electronic information, please let us know:

©NOTICE: All papers are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

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Publications of the bioinformatics group 2013

Relations Between Graphs

Jan Hubička, Jürgen Jost, Yangjing Long and Peter F. Stadler
Ars Math Contemp 6: 323-350 (2013)
PREPRINT 12-028: [ Abstract ]  [ PDF ]
[ Publishers's page ]  paperID

Searchability of central nodes in networks

Konstantin Klemm
J. Stat. Phys. 151:707-719 (2013)
PREPRINT 12-020: [ Abstract ]  [ PDF ]
[ Publishers's page ]  paperID

Dicer-Processed Small RNAs: Rules and Exceptions

David Langenberger, M. Volkan C, Steve Hoffmann, Peter F. Stadler
J.Exp.Zool.B Mol.Dev.Evol. 320: 35-46 (2012)
PREPRINT 12-005:   [ Supplement ]
[ Publishers's page ]  paperID

On topological RNA interaction structures

Jing Qin and Christian M. Reidys
Journal of Computational Biology, to appear
PREPRINT 12-003: [ Abstract ]  [ PDF ]

Orthology Relations, Symbolic Ultrametrics, and Cographs

Marc Hellmuth, Maribel Hernandez-Rosales, Katharina T. Huber, Vincent Moulton, Peter F. Stadler, Nicolas Wieseke
J.Math.Biol. 66: 399-420 (2013)
PREPRINT 11-026: [ Abstract ]  [ PDF ]
[ Publishers's page ]  paperID

Prediction of lethal and synthetically lethal knock-outs in regulatory networks

Gunnar Boldhaus, Florian Greil, Konstantin Klemm
Theory in Biosciences 132:17-25 (2013)
PREPRINT 11-018: [ Abstract ]  [ PDF ]  [ Supplement ]
[ Publishers's page ]  paperID

Near Intron Pairs and the Metazoan Tree

Jörg Lehmann, Peter F. Stadler, Veiko Krauss
Mol. Phylogenet. Evol. 66(3):811-823 (2013)
PREPRINT 11-003: [ Abstract ]  [ Supplement ]
[ Publishers's page ]