Publications - Published papers

Please find below publications of our group. Currently, we list 508 papers. Some of the publications are in collaboration with the group of Sonja Prohaska and are also listed in the publication list for her individual group. Access to published papers (access) is restricted to our local network and chosen collaborators. If you have problems accessing electronic information, please let us know:

©NOTICE: All papers are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

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Publications of the bioinformatics group 2018

Coordinate systems for supergenomes

Gärtner, Fabian and Siederdissen, Christian and Müller, Lydia and Stadler, Peter F.
Algorithms for Molecular Biology 13 (1): 15
PREPRINT 18-057: [ Abstract ]
[ Publishers's page ]

RNApuzzler: Efficient Outerplanar Drawing of RNA-Secondary Structures

Wiegreffe, and Alexander, and Stadler, and Zeckzer,
Bioinformatics (2018): bty817
PREPRINT 18-056:
[ Publishers's page ]

Noncoding RNA Transcripts during Differentiation of Induced Pluripotent Stem Cells into Hepatocytes

Skrzypczyk, Aniela and Kehr, Stephanie and Krystel, Ilona and Bernhart, Stephan H and Giri, Shibashish and Bader, Augustinus and Stadler, Peter F
Stem Cells International, vol. 2018, Article ID 5692840, 15 pages
PREPRINT 18-055:
[ Publishers's page ]

Nonprotein-Coding RNAs as Regulators of Development in Tunicates

Velandia-Huerto, Cristian A and Brown, Federico D and Gittenberger, Adriaan and Stadler, Peter F and Berm\'udez-Santana, Clara I
Marine Organisms as Model Systems in Biology and Medicine(2018)
PREPRINT 18-053:
[ Publishers's page ]

The Sierra Platinum Service for generating peak-calls for replicated ChIP-seq experiments

Daniel Wiegreffe, and Lydia Müller, and Jens Steuck, and Dirk Zeckzer, and Peter F. Stadler,
BMC Research Notes
PREPRINT 18-052: [ Abstract ]
[ Publishers's page ]

Analyzing Histone Modifications Using Tiled Binned Clustering and 3D Scatter Plots

Dirk Zeckzer, and Daniel Wiegreffe, and Lydia Müller,
Journal of WSCG 26
PREPRINT 18-051:

Customized biomedical informatics

Singh, Abhishek Narain
Big Data Analytics 3 (1): 6
PREPRINT 18-049: [ Abstract ]
[ Publishers's page ]

A translational silencing function of MCPIP1/Regnase-1 specified by the target site context

Behrens, Gesine and Winzen, Reinhard and Rehage, Nina and Dörrie, Anneke and Barsch, Monika and Hoffmann, Anne and Hackermüller, Jörg and Tiedje, Christopher and Heissmeyer, Vigo and Holtmann, Helmut
Nucleic Acids Research: gky106
PREPRINT 18-046:
[ Publishers's page ]

Binding of NUFIP2 to Roquin promotes recognition and regulation of ICOS mRNA

Rehage, Nina and Davydova, Elena and Conrad, Christine and Behrens, Gesine and Maiser, Andreas and Stehklein, Jenny E. and Brenner, Sven and Klein, Juliane and Jeridi, Aicha and Hoffmann, Anne and Lee, Eunhae and Dianzani, Umberto and Willemsen, Rob and Feederle, Regina and Reiche, Kristin and Hackermüller, Jörg and Leonhardt, Heinrich and Sharma, Sonia and Niessing, Dierk and Heissmeyer, Vigo
Nature Communications 9: 299
PREPRINT 18-045: [ Abstract ]
[ Publishers's page ]