10. Herbstseminar der Bioinformatik (2012) registration

Panorama Rosenberg

The meeting takes place from 02.10.2012 - 07.10.2012.

Contact: herbstseminar [at] bioinf.uni-leipzig.de

Location

The meeting will be in the Hotel Jef (Doubice 107, Doubice 40758, Czech Republic).

Hotel Jef (map)
Additional information about the hotel can be found here.
Phone: +420 412 381 429
e-Mail: doubice@hotel-jef.cz

Conference place

The hotel has 31 rooms for approximately 65 people. Each room has a bedroom and its own bathroom including a shower. If you prefer not to stay in Hotel Jef we have the possibility to get rooms - with student unfriendly prices - in the neighborhood. In this case please send us an email till end of May. Breakfast and dinner will be served for all participants in Hotel Jef.

You will get further information about breakfast, dinner, etc. on 02.10.2012 at the reception.

room example

For more information and pictures of Hotel Jef have a look at their web pages one and two.
Since Doubice is no city with a lot of light you might need a flashlight/torch for your night walks.

Registration Fee (Student 115 Euro and Professor 175 Euro)

The conference fee includes accommodation, breakfast and dinner at Hotel Jef.
Please transfer the registration fee to the conference bank account in advance.
You will recieve an email with all details after successful registration.

Cash

Please, ensure that you have enough money for additional meals, drinks, etc. It is no ATM available!
It is not possibile to pay with credit or ec-card in Hotel Jef. You can pay in Euro, however with a "bad" rate, or in Czech Kronen.

Scientific Program (download)

It is possible for every participant to present his/her scientific work. All diploma and PhD students should give a talk. This is not only a burden but also a good chance to present your scientific results to Peter, Ivo, Rolf and all the others of the Bompfünewerer consortium at the same time. We will have three kinds of talks:

short talk: 15 minutes
medium talk: 25 minutes
late night show: 45 minutes

A meaningful (preliminary) title should be given in the registration process.

As usual we bring a projector (beamer) and a laser pointer for the presentations, which are given at Hotel Jef.

The final program can be dowloaded as PDF (program.pdf).

Traveling (map) - three choices

by bus from University Leipzig, which is possible for nine people (including driver)
by private car
by train
You have to take a train to Schöna and a ferry to Hrensko. From Hrensko to Doubice you can either take the bus (time table) or a taxi (+420 777 155 455). Please be self organized! We will also provide a shuttle (our university bus and/or private cars) to bring you from the ferry in Hrensko to the conference place:
- 02.10.2012 at 6 pm
- 03.10.2012 at 11 am
and back to Hrensko:
- 07.10.2012 at 9 am.
Contact us if you would like to take our shuttle service (herbstseminar [at] bioinf.uni-leipzig.de).

For those that arrive late at night, please check at bahn.de if a connection to Schöna and the river crossing with the ferry is still possible.

It is possible to make use of the "Sachsen Ticket", which is valid for five people and possibly the cheapest way to travel to/from the meeting.

Reiseanträge (Leipzig-people)

The best way are traveling groups (e.g. people driving in one car, train traveler groups). Please be self-organized! Everybody has to fill a single Dienstreise Formular!

Panorama Rudolfstein

Registration is closed

Registered participants

	Firstname Lastname	Affiliation	Talk Title	Time	Arrival by	Departure by	Payment Status
1	Sven Findeiss	University of Vienna	Rational Design Progress	15	other	other	done
2	Rolf Backofen	Freiburg	News and Updates from Freiburg	25	other	other	done
3	Manja Marz	FSU Jena	RNA virus goes bioinformatics	25	other	other	done
4	Petra Pregel	ULEI	---	15	other	other	done
5	Katja Nowick	Bioinformatik Leipzig	Primate transcriptome evolution	15	other	other	done
6	Arli Aditya Parikesit	bioinf leipzig	Eukaryotes Protein Domain Distribution	25	bus	bus	done
7	Christian Arnold	Bioinf Leipzig	Chromatin Rules and Complexity	25	other	other	done
8	Axel Wintsche	UNILEI	news from MEME	15	other	other	done
9	Abdullah Sahyoun	Uni Leipzig	Mitochondrial genomes	15	bus	bus	done
10	Lorena Rivarola D.	UFZ - Universität Leipzig	NGS and Ecotoxicology	15	bus	bus	done
11	Peter Stadler	ULEI	Zuhörer	15	car	car	done
12	Baerbel Stadler	ULEI	---	15	other	other	done
13	Elias Stadler	---	---	15	other	other	done
14	Lydia Steiner	UniLei	something about chromatin	25	bus	bus	done
15	Magnus Marcin	IIMCB Warsaw	Prediction of accuracy of RNA 3D models	15	other	other	done
16	Grzegorz Chojnowski	IIMCB Warsaw	Structural analysis of RNA-RNA interactions	15	other	other	done
17	Matthias Bernt	PACOSY Leipzig	something new about a gene order or mitogenome related topic	25	other	other	done
18	Josef Leydold	WU Vienna	Zuhöhrer	15	car	car	done
19	Sandra Leydold	---	Zuhöhrerin	15	car	car	done
20	Johannes Waldmann	HTWK Leipzig	sth. about Constraint Programming/SAT encoding/Haskell	25	other	other	done
21	Maik Riechert	HTWK Leipzig	RNA folding with multiple context-free grammars using DSLs in Scala	25	train	train	done
22	Stefanie Wehner	FSU Jena	something about ncRNAs	15	other	other	done
23	Konstantin Riege	FSU Jena	Automatization of ncRNA annotation - an outlook	15	other	other	done
24	David Langenberger	Uni Leipzig	High-Throughput Sequencing: An Overview	25	car	car	done
25	Mario Fasold	IZBI	SNP detection in deep sequencing data	25	other	other	done
26	Christian Hoener zu Siederdissen	University of Vienna	Warm, fuzzy things for fun and profit	15	other	other	done
27	Peter Kerpedjiev	University of Vienna	Coarse Grained 3D RNA Folding	15	other	other	done
28	Markus Fricke	FSU Jena	Bioinformatic analysis of the coronavirus - an outlook	15	other	other	done
29	Stanislaw Dunin-Horkawicz	IIMCB	Evolution of ncRNAs	15	other	other	done
30	Grzegorz Lach	IIMCB, Warsaw	Design	15	car	car	done
31	Michal Boniecki	IIMCB, Warsaw	SimRNA - program for RNA folding simulations	15	other	other	done
32	Tobias Mede	ULEI-Bioinf	PKR and its activators	15	bus	bus	done
33	Sebastian Bartschat	ULEI-Bioinf	snoRNAs in fungi	15	other	other	done
34	Gu Jiao	MIS MPI	something about spectrum	15	train	train	done
35	Stefan Badelt	Wien, TBI	Design of self-processing ribozymes	15	other	other	done
36	Ronny Lorenz	TBI Vienna	RNA Folding Algorithms with G-Quadruplexes	25	other	other	done
37	Christian Otto	Bioinf Leipzig	something about segemehl and its features	25	bus	bus	done
38	Fabian Amman	University of Vienna	bacterial translation initiation and sRNA	15	other	other	done
39	Andrea Tanzer	CRG	Over Short or Long	15	other	other	done
40	Marcel Kucharik	University of Vienna	RNA folding kinetics	15	other	other	done
41	Ivo Hofacker	University of Vienna	---	15	car	car	done
42	Hammer Stefan	University of Vienna	start up of PhD project	15	other	other	done
43	Irma Lozada-Chávez	Bioinf Leipzig	Differential evolution of non-coding DNA across eukaryotes and its relationship with multicellular complexity	25	other	other	done
44	Philipp-Jens Ostermeier	MPI MIS	xy ungel\"{o}st	15	train	train	done
45	Lydia Ostermeier	Bioinf Leipzig	sth about graphs	15	train	train	done
46	Stephan Bernhart	Bioinf	--	15	other	other	done
47	Alexander Schäfer	MPI for Human Cognitive and Brain Science	clustering of human brain graphs	15	train	train	done
48	Axel Mosig	RUB und PICB	The Benefits of Procrastination in Image Analysis	45	car	car	done
49	Nicolas Wieseke	FSU Jena	something about multiple genome alignment or cophylogeny	15	car	car	done
50	Jana Hertel	Bioinf Leipzig	---	15	other	other	done
51	Joerg Fallmann	University of Vienna	protein-RNA interactions, ARE elements, ....	15	train	train	done
52	Christoph Flamm	University of Vienna	Can Chemical Reaction Networks compute?	45	other	other	done
53	Sebastian Wild	TU Kaiserslautern	RNA-RNA Interaction Prediction with Stochastic Grammars	25	train	train	done
54	Ruby Moritz	Universität Leipzig	Annotation Guided Local Similarity Search in Multiple Sequences and its Application to Mitochondrial Genomes	15	other	other	done
55	Daniel Merkle	University of Southern Denmark	Something on Analysis of Chemical Reaction Networks	25	train	train	done
56	Jakob L. Andersen	University of Southern Denmark	Even more on Analysis of Chemical Reaction Networks	25	train	bus	done
57	Jing Qin	Bioinf	Landscapes	15	train	train	done
58	Xuanshi Liu	Bioinf,University of Leipzig	The role of parent-of-origin in obesity using haplotype phasing	15	train	train	done
59	Florian Eggenhofer	TBI	cmcompare webserver	15	other	other	done
60	Stefan Janssen	Bielefeld University	Fun with covariance models	25	train	train	done
61	Philipp Peters	University of Southern Denmark	Exploring chemistry with SMT	25	train	train	done
62	Luz rosalina Tincopa Marca	Bioinformatik Leipzig	Transcription factors in primates	15	other	other	done
63	Christoph Kaempf	Uni-Leipzig	Something with RNA probing	15	other	other	done
64	Stephanie Kehr	ULEI-Bioinf	snoRNAs in the Cajal Body	15	bus	bus	done
65	Claus Weinholdt	MLU Halle-Wittenberg	something about microRNA targets	15	car	car	done
66	Sachin Pundhir	RTH, University of Copenhagen	A computational framework to analyze RNA-seq data for differential processing patterns	15	train	train	done
67	Anne Wenzel	RTH, University of Copenhagen	something about RNA-RNA interactions	15	train	train	done
68	Sabarinathan Radhakrishnan	RTH, University of Copenhagen	RNAsnp - features and appliation	15	train	train	done
69	Hui Xiao	RTH, University of Copenhagen	---	15	train	train	done
70	Tim Johann	IZBI	(preliminary) An integrated modular software framework for cellular simulations.	15	other	other	done
71	Johannes Neitsch	IZBI	Modeling of cells in liver	15	train	train	done
72	Stefan Seemann	RTH, University of Copenhagen	Genome-wide study of conserved RNA secondary structures	25	train	train	done
73	Adrian Friebel	IZBI Leipzig	Image Analysis	15	train	train	done
74	Jan Gorodkin	RTH, Uni-CPH	- - - -	15	other	other	done
75	Yuki Kato	Nara Institute of Science and Technology	RNA structural alignment using dual decomposition	15	other	other	done
76	Jens Steuck	ULEI	---	0	car	car	done
77	Rainer Machne	Universitaet Leipzig	Dynamic chromosomal domain organization of an archaic eukaryotic growth program	15	train	train	done
78	Pawel Piatkowski	IIMCB	miRNA processing by Dicer	15	car	car	done