codaln
Nucleic Acid Sequence Alignments of Partly Coding Regions Using Genetic Information
codaln produces multiple nucleic acid alignments using information on
coding and non-coding regions as part of the scoring function. This is
done in order to prevent the problem of higher sequence divergency on
the level of nucleic acids as compared to the underlying protein
sequences in the case of coding at a certain region of the input
nucleic acid sequences. The program allows plenty of user intervention to
overrule the defaults.
Current version:
codaln 1.0
[Download of program]
[The manual page only]
codaln is the successor of code2aln (version 1.2)
The predecessor program code2aln 1.2 is available here: code2aln 1.2
If you find this software useful for your research, please cite the
following work:
- Nucleic Acid Sequence Alignments of Partly Coding Regions
Roman R. Stocsits
Dissertation, 2003
Postscript
PDF
<roman@bioinf.uni-leipzig.de>
Interdisciplinary Centre for Bioinformatics, Haertelstrasse 16-18,
D-04107 Leipzig, Germany
Last modified: 2005-10-13 20:55:00 roman