TileCalcGC {TileShuffle}R Documentation

TileCalcGC

Description

Calculates the GC content of probe sequences.

Usage

TileCalcGC(probeseq)

Arguments

probeseq A character vector containing the probe sequences.

Details

Calculates the GC content as sum of the relative numbers of Cs and Gs in the probe sequence. More precisely, the GC content is calculated by frac{G+C}{N} where N is the length of probe sequence while C and G are the number of occurrences of the character C and G in the probe sequence, respectively.

Value

Returns a numeric vector containing the GC content (0 <=q GC <=q 1) of each probe sequence in probeseq.


[Package TileShuffle version 0.1.0 Index]