TileCalcWinMedian2 {TileShuffle}R Documentation

TileCalcWinMedian2

Description

Calculates median on windows.

Usage

TileCalcWinMedian2(int, win.st, win.len)

Arguments

int A numeric vector containing one or more probe scores (i.e. intensities or log-fold changes).
win.st An integer vector containing one or more window start positions in int.
win.len An integer vector containing one or more window lengths. It must be of same length as win.st.

Details

Calculates median on probe scores with given start positions and window lengths. In case of few but longer windows, this function is superior to TileCalcWinMedian which is optimized for short windows.

Value

A numeric vector containing the median of the window scores for each possible start position. Note that windows of length zero are reported with a window score of NA. Moreover, probe scores with the value NA are excluded from the calculation.


[Package TileShuffle version 0.1.0 Index]