TileShuffleCheck {TileShuffle} | R Documentation |
Checks parameter for exported function TileShuffle
.
TileShuffleCheck(input.type, signal.filename, cel.filename, cel2.filename, celinc.filename, custom.filename, custom2.filename, custominc.filename, bpmap.filename, minhits, group, pmonly, normalize, noofperms, winsize, qvalue, gcmode, gcnum, score.function, randomize, diff, diff.variant, regions.filename, zscore.filename, output.filename, verbose)
input.type |
An integer value from the set of valid values
(1, 2, or 3). |
signal.filename |
Filename as a character to existing file. |
cel.filename |
A vector of one or more filenames as a
character to existing files. |
cel2.filename |
A vector of one or more filename as a
character to existing files or set to NULL . |
celinc.filename |
A vector of filenames or one or more
filenames as character to existing files or set to
NULL . |
custom.filename |
A vector of one or more filenames as a
character to existing files. |
custom2.filename |
A vector of one or more filename as a
character to existing files or set to NULL . |
custominc.filename |
A vector of filenames or one or more
filenames as character to existing files or set to
NULL . |
bpmap.filename |
Filename as a character to existing file. |
minhits |
An integer value. |
group |
A character value. |
pmonly |
A logical value. |
normalize |
A logical value. |
noofperms |
An integer value greater than zero. |
winsize |
An integer value greater than zero. |
qvalue |
A numeric value between zero and one (both boundaries
included). |
gcmode |
A character value from the set of valid values
("fixed", "automatic"). |
gcnum |
An integer value. If gcmode is set to "fixed"
only values from the set (1, 2, 3, or 4) are valid. |
score.function |
A character value from the set of valid values
("mean", "trimmed", or "median"). |
randomize |
A logical value. |
diff |
A logical value. |
diff.variant |
A character value from the set of valid values
("A" or "B"). Only required if diff is enabled. |
regions.filename |
Filename as a character to existing file or
set to NULL . |
zscore.filename |
Filename as a character or set to NULL . |
output.filename |
Filename as a character . |
verbose |
A logical value. |
Checks parameter for exported function TileShuffle
whether
they are missing, have a incorrect data type, or are obviously not correct,
e.g., filename parameter refers to non-existing file.
None but the given paramters into their correct data type if necessary and possible.