TileShuffleCheck {TileShuffle}R Documentation

TileShuffleCheck

Description

Checks parameter for exported function TileShuffle.

Usage

TileShuffleCheck(input.type, signal.filename, cel.filename,
    cel2.filename, celinc.filename, custom.filename, custom2.filename,
    custominc.filename, bpmap.filename, minhits, group, pmonly,
    normalize, noofperms, winsize, qvalue, gcmode, gcnum,
    score.function, randomize, diff, diff.variant, regions.filename,
    zscore.filename, output.filename, verbose)

Arguments

input.type An integer value from the set of valid values (1, 2, or 3).
signal.filename Filename as a character to existing file.
cel.filename A vector of one or more filenames as a character to existing files.
cel2.filename A vector of one or more filename as a character to existing files or set to NULL.
celinc.filename A vector of filenames or one or more filenames as character to existing files or set to NULL.
custom.filename A vector of one or more filenames as a character to existing files.
custom2.filename A vector of one or more filename as a character to existing files or set to NULL.
custominc.filename A vector of filenames or one or more filenames as character to existing files or set to NULL.
bpmap.filename Filename as a character to existing file.
minhits An integer value.
group A character value.
pmonly A logical value.
normalize A logical value.
noofperms An integer value greater than zero.
winsize An integer value greater than zero.
qvalue A numeric value between zero and one (both boundaries included).
gcmode A character value from the set of valid values ("fixed", "automatic").
gcnum An integer value. If gcmode is set to "fixed" only values from the set (1, 2, 3, or 4) are valid.
score.function A character value from the set of valid values ("mean", "trimmed", or "median").
randomize A logical value.
diff A logical value.
diff.variant A character value from the set of valid values ("A" or "B"). Only required if diff is enabled.
regions.filename Filename as a character to existing file or set to NULL.
zscore.filename Filename as a character or set to NULL.
output.filename Filename as a character.
verbose A logical value.

Details

Checks parameter for exported function TileShuffle whether they are missing, have a incorrect data type, or are obviously not correct, e.g., filename parameter refers to non-existing file.

Value

None but the given paramters into their correct data type if necessary and possible.


[Package TileShuffle version 0.1.0 Index]