TileAnalysisCheck {TileShuffle} | R Documentation |
Checks parameter for exported function TileAnalysis
.
TileAnalysisCheck(data, noofperms, winsize, qvalue, gcmode, gcnum, score.function, randomize, diff, diff.variant, regions.filename, zscore, verbose)
data |
A data.frame with non-zero rows and the columns fullname
(factor or character ), name (factor or
character ), centerpos (integer ), probelength
(integer ), intensity (numeric ), and gc
(numeric ) with only non-NA values. Moreover, the gc must
have values in the range [0,1]. |
noofperms |
An integer value greater than zero. |
winsize |
An integer value greater than zero. |
qvalue |
A numeric value between zero and one (both boundaries
included). |
gcmode |
A character value from the set of valid values
("fixed", "automatic"). |
gcnum |
An integer value. If gcmode is set to "fixed"
only values from the set (1, 2, 3, or 4) are valid. |
score.function |
A character value from the set of valid values
("mean", "trimmed", or "median"). |
randomize |
A logical value. |
diff |
A logical value. |
diff.variant |
A character value from the set of valid values
("A" or "B"). Only required if diff is enabled. |
regions.filename |
Filename as a character to existing file or
set to NULL . |
zscore |
A logical value. |
verbose |
A logical value. |
Checks parameter for exported function TileAnalysis
whether
they are missing, have a incorrect data type, or are obviously not correct,
e.g., filename parameter refers to non-existing file.
None but the given paramters into their correct data type if necessary and possible.