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u
v
Here is a list of all documented class members with links to the class documentation for each member:
- a -
alnscore :
gotoh_aln
- b -
basepairs :
gotoh_motif
- c -
cfg_file :
gotoh_arguments
comment :
gotoh_motif
consL :
gotoh_motif
consR :
gotoh_motif
- d -
db_file :
gotoh_arguments
db_len :
gotoh_aln
dbase :
gotoh_settings
distance :
gotoh_motifCandidate
- e -
e :
gotoh_arguments
eL :
gotoh_motifCandidate
eR :
gotoh_motifCandidate
evalue :
gotoh_aln
- f -
freq :
gotoh_motifSingle
- g -
gap_extend :
gotoh_settings
gap_open :
gotoh_settings
gapopening :
gotoh_aln
- h -
help :
gotoh_arguments
hitname :
gotoh_aln
hitseq :
gotoh_aln
- i -
inf :
gotoh_settings
info :
gotoh_motifSingle
infoL :
gotoh_motif
infoR :
gotoh_motif
- l -
left_mseq :
gotoh_motifCandidate
left_seq :
gotoh_motifCandidate
len :
gotoh_motifSingle
,
gotoh_motif
length :
gotoh_aln
- m -
m1_file :
gotoh_arguments
m1_seqT :
gotoh_arguments
,
gotoh_settings
m2_file :
gotoh_arguments
m2_seqT :
gotoh_arguments
,
gotoh_settings
m2_strucT :
gotoh_settings
,
gotoh_arguments
m2T :
gotoh_arguments
,
gotoh_settings
match :
gotoh_settings
max :
gotoh_motifSingle
maxC :
gotoh_motifSingle
maxCL :
gotoh_motif
maxCR :
gotoh_motif
maxdistance :
gotoh_settings
maxL :
gotoh_motif
maxR :
gotoh_motif
maxScore :
gotoh_motif
mD :
gotoh_arguments
min :
gotoh_motifSingle
minL :
gotoh_motif
minR :
gotoh_motif
mismatch :
gotoh_settings
mismatches :
gotoh_aln
motif1 :
gotoh_settings
motif2 :
gotoh_settings
- n -
n_bp :
gotoh_motif
name :
gotoh_motif
,
gotoh_motifSingle
nLeft :
gotoh_motif
nRight :
gotoh_motif
ntfalnscore :
gotoh_aln
- o -
out :
gotoh_arguments
output_format :
gotoh_settings
- p -
p :
gotoh_arguments
percID :
gotoh_aln
,
gotoh_settings
- q -
q_file :
gotoh_arguments
qEnd :
gotoh_aln
qStart :
gotoh_aln
query :
gotoh_settings
queryname :
gotoh_aln
queryseq :
gotoh_aln
- r -
res_file :
gotoh_arguments
,
gotoh_settings
right_mseq :
gotoh_motifCandidate
right_seq :
gotoh_motifCandidate
- s -
score :
gotoh_motifCandidate
score_perc :
gotoh_motifCandidate
scoreBP :
gotoh_motifCandidate
,
gotoh_motif
scoreBP_perc :
gotoh_motifCandidate
scoreL :
gotoh_motifCandidate
scoreL_perc :
gotoh_motifCandidate
scoreR :
gotoh_motifCandidate
scoreR_perc :
gotoh_motifCandidate
sEnd :
gotoh_aln
shift :
gotoh_aln
size :
iarray
,
farray
sL :
gotoh_motifCandidate
split :
gotoh_arguments
sR :
gotoh_motifCandidate
sStart :
gotoh_aln
stat_file :
gotoh_settings
,
gotoh_arguments
stemL :
gotoh_motif
stemR :
gotoh_motif
strand :
gotoh_aln
- u -
usrE :
gotoh_settings
- v -
vals :
iarray
,
farray
verbose :
gotoh_settings
,
gotoh_arguments
version :
gotoh_arguments
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