Public Attributes

gotoh_motifCandidate Struct Reference

Holds the computed scoring of a candidate for a matching 2-sided motif. More...

#include <structs.h>

List of all members.

Public Attributes

char * left_seq
char * left_mseq
char * right_seq
char * right_mseq
float scoreL
float scoreL_perc
float scoreR
float scoreR_perc
float scoreBP
float scoreBP_perc
float score
float score_perc
int sL
int eL
int sR
int eR
int distance

Detailed Description

Holds the computed scoring of a candidate for a matching 2-sided motif.

gotoh_motifCandidate holds the aligned consensus sequences of pattern and database, the corresponding scores for sequence and structure for each stem and the complete score


Member Data Documentation

Distance between both stems in database.

End of left stem in database.

End of right stem in database.

Aligned motif (consensus) sequence of left stem (with gaps).

Aligned database (hit) sequence of left stem (with gaps).

Aligned motif (consensus) sequence of right stem (with gaps).

Aligned database (hit) sequence of right stem (with gaps).

Overall score. (scoreL + scoreR + scoreBP) / 3

Real overall score vs. maximal possible score of motif. Note: This score may exceed 100, due to a better structure score than the motif has.

Base pair score.

Real base pair score vs. maximal possible base pair score of motif. Note: this can be higher than 100, since some structures might get a better score than the one of the motif.

Sequence alignment score of left stem.

Percent identiy of left stem alignment.

Sequence alignment score of right stem.

Percent identiy of right stem alignment.

Start of left stem in database.

Start of right stem in database.


The documentation for this struct was generated from the following file:
 All Classes Files Functions Variables