Left base   Right base	Score   E-Value

# Coordinates refer individually to structural domains

# 5' Stem
*	        41	        69	14.17	0.736046
# Stem A

*	         1	       189	39.39	6.19854e-05
*	        12	       183	10.13	1.19805
*	        23	       177	16.50	0.182588
*	        25	       176	13.00	0.553765
*	        26	       175	14.08	0.40085
*	        31	       167	28.84	0.00273975
*	        41	       150	10.02	1.24616
*	        45	       145	10.89	1.00772
*	        48	       144	17.98	0.114948
*	        50	       142	12.08	0.71773
*	        85	       122	17.00	0.153639
 	       150	       176	28.18	0.489241

STEM B:
*	         1	        75	17.07	0.720071
*	         4	        72	13.81	1.29252
*	        16	        56	26.07	0.104865
*	        17	        55	31.51	0.02956
*	        21	        49	12.57	1.56157
 	        70	        75	32.29	1.93128


3' STEM:

*	         4	        25	2.26	0.271449
*	         8	        23	7.61	0.0263768
*	         9	        22	8.37	0.0182171
*	        10	        21	0.60	0.87942