Table S12: Box C/D snoRNA families with a conserved D target. A conservation pattern for the predicted target interaction is described in 'conservation'. A legend can be seen at the bottom of the table. Since no unambiguous D' region is identified, no comprehensive and family-wide target prediction could be performed.

original name	# sequences	aln pos	sce pos	ICI_sno	mean mfe	conservation	verified	snoStrip name
Nc_CD_13	104	18S-593	18S-541	1.67	-20.28	3,6	-	CD_13
snR79	113	18S-1116	18S-1007	1.86	-19.78	3..6	+	CD_18
snR63	112	25S-3441	25S-2256	0.81	-15.31	3..6	+	CD_33
snR55	103	18S-1398	18S-1269	1.98	-22.31	3,6	+	CD_34
U14	129	18S-456	18S-414	1.71	-21.52	3,8	+	CD_37
Nc_CD_40	26	25S-3061	25S-1937	0.78	-17.05	11-13	-	CD_40
snR39,snR39b,snR59	151	25S-1794	25S-805	1.76	-26.08	3..6	+	CD_47
snR50	10	25S-1857	25S-867	2.37	-21.89	10	+	CD_58
snR57	19	18S-1775	18S-1572	2.27	-21.54	10	+	CD_63
LSU-G1431	17	25S-2490	25S-1434	1.29	-18.50	10-Sacch	-	CD_71
LSU-G364	3	18S-650	18S-597	1.12	-9.00	Cand	-	CD_72

Conservation of target interactions: 1) Fungi 2) Microsporidia 3) Mucoromycotina 4) Chytridiomycota 5) Blastocladiomycota 6) Dikarya 7) Basidiomycota 8) Asomycota 9) Taphrinomycotina 10) Saccharomycotina 11) Pezizomycotina 12) Dothideomycetes 13) Eurotiomycetes 14) Leotiomycetes 15) Sordariomycetes Sacch) Saccharomycetaceae Cand) Candida 3..6) equals 3,4,5,6 6-15) equals 6 without 15