Table S11.4. The table shows the comparison of Ajellomyces capsulatus snoRNAs annotated by snoStrip and available Ribo-seq data. Overlapping reads are given in raw numbers and reads per kilobase million (rpkm). The percentage of maximum entropy (pme) score is calculated by the Rfoot tool.
chr start end snoStrip name original name strand SRR2015208 SRR2015210 SRR2015214 SRR2015212
reads rpkm pme reads rpkm pme reads rpkm pme reads rpkm pme
Supercontig_1.3 603082 603187 CD_12-1 . - 29906 2625.06 0.452 10522 923.04 0.494 35918 2598.61 0.472 89660 5101.99 0.481
Supercontig_1.5 1065989 1066075 CD_13-1 . + 1370 146.82 0.284 1080 115.67 0.460 4612 407.39 0.297 1851 128.60 0.332
Supercontig_1.1 3366322 3366407 CD_14-1 . + 31 3.36 . 1861 201.67 0.672 367 32.80 0.764 172 12.09 .
Supercontig_1.2 101092 101183 CD_15-1 . - 81 8.20 . 1576 159.52 0.466 104 8.68 . 252 16.55 .
Supercontig_1.3 2110560 2110678 CD_16-1 . - 2927 228.62 0.421 4762 371.72 0.642 1246 80.21 0.738 1489 75.40 0.620
Supercontig_1.1 5141777 5141870 CD_17-1 . + 58 5.75 . 316 31.30 0.778 29 2.37 . 0 0.00 .
Supercontig_1.1 2067085 2067181 CD_18-1 . + 175 16.80 0.289 2556 245.25 0.585 865 68.45 0.397 847 52.72 0.561
Supercontig_1.3 2674180 2674265 CD_19-1 . - 318 34.48 0.391 717 77.70 0.505 137 12.24 0.556 250 17.57 0.347
Supercontig_1.1 6034932 6035025 CD_19-2 . + 313 31.02 0.608 1395 138.17 0.604 726 59.30 0.459 577 37.07 0.750
Supercontig_1.10 593055 593190 CD_1-1 . + 2048 139.82 0.396 7772 530.29 0.503 808 45.47 0.615 979 43.33 0.565
Supercontig_1.3 602581 602671 CD_21-1 . - 2715 278.03 0.184 2905 297.32 0.477 2783 234.90 0.227 3162 209.92 0.278
Supercontig_1.3 203067 203157 CD_22-1 . - 6437 659.19 0.443 5738 587.26 0.557 7241 611.19 0.426 6137 407.42 0.411
Supercontig_1.10 1126574 1126653 CD_23-1 . + 12774 1490.29 0.181 4172 486.44 0.203 1990 191.36 0.224 3002 227.05 0.363
Supercontig_1.3 603379 603474 CD_24-1 . - 308 29.88 0.459 4439 430.40 0.508 1596 127.62 0.510 3941 247.86 0.552
Supercontig_1.9 351978 352076 CD_26-1 . - 182 17.12 0.713 1167 109.69 0.653 713 55.27 0.752 716 43.65 0.603
Supercontig_1.7 490090 490187 CD_27-1 . + 191 18.15 0.821 360 34.19 0.689 149 11.67 0.376 73 4.50 .
Supercontig_1.14 164811 164899 CD_2-1 . - 212 22.20 0.418 487 50.98 0.776 275 23.74 0.564 147 9.98 0.000
Supercontig_1.4 1588873 1588965 CD_30-1 . + 133 13.32 0.376 1597 159.89 0.605 41 3.39 . 269 17.47 0.909
Supercontig_1.3 602318 602415 CD_31-1 . - 2481 235.74 0.570 1377 130.76 0.709 2809 219.99 0.608 4168 256.74 0.568
Supercontig_1.6 1996809 1996920 CD_33-1 . - 139 11.54 . 1233 102.32 0.548 507 34.70 0.659 515 27.72 0.603
Supercontig_1.3 765771 765869 CD_35-1 . + 144 13.54 0.713 510 47.94 0.615 202 15.66 0.600 202 12.32 0.648
Supercontig_1.3 2110247 2110368 CD_37-1 . - 322 24.53 0.548 2826 215.13 0.725 1793 112.57 0.550 1721 84.98 0.707
Supercontig_1.8 1064004 1064092 CD_38-1 . + 242 25.35 0.386 1496 156.59 0.642 887 76.57 0.412 788 53.50 0.319
Supercontig_1.1 2558700 2558800 CD_39-1 . - 75 6.91 . 845 77.83 0.556 728 55.30 0.433 413 24.68 0.622
Supercontig_1.8 333781 333893 CD_3-1 . - 272 22.38 . 720 59.21 0.643 90 6.10 . 129 6.88 .
Supercontig_1.4 2847158 2847242 CD_41-1 . + 731 80.21 0.257 1403 153.85 0.626 1197 108.25 0.322 922 65.58 0.338
Supercontig_1.1 5143036 5143119 CD_42-1 . + 955 106.05 0.244 1234 136.95 0.583 731 66.90 0.490 881 63.42 0.164
Supercontig_1.1 5564589 5564695 CD_43-1 . - 59 5.13 . 564 49.01 0.533 606 43.43 0.765 903 50.90 0.794
Supercontig_1.1 3132457 3132553 CD_44-1 . - 30 2.88 . 1451 139.22 0.211 161 12.74 0.000 432 26.89 0.352
Supercontig_1.1 6205513 6205609 CD_46-1 . - 120 11.52 . 675 64.77 0.792 851 67.34 0.635 650 40.46 0.731
Supercontig_1.12 492359 492445 CD_47-1 . + 20 2.14 . 907 97.15 0.562 104 9.19 . 288 20.01 0.265
Supercontig_1.4 1642459 1642551 CD_49-1 . + 1795 179.82 0.220 6424 643.18 0.206 162 13.38 1.000 593 38.51 0.480
Supercontig_1.8 104665 104752 CD_51-1 . - 140 14.83 . 767 81.21 0.490 189 16.50 . 428 29.39 0.591
Supercontig_1.1 5135903 5136015 CD_56-1 . - 65 5.35 . 1100 90.47 0.691 174 11.80 . 114 6.08 .
Supercontig_1.1 4015328 4015424 CD_5-1 . + 124 11.90 . 275 26.39 0.717 155 12.27 0.505 403 25.08 0.583
Supercontig_1.3 603640 603728 CD_5-2 . - 101 10.58 . 1598 167.27 0.330 787 67.94 0.444 1949 132.33 0.425
Supercontig_1.1 5142345 5142482 CD_61-1 . + 5454 366.91 0.275 3777 253.95 0.464 10907 604.79 0.304 23875 1041.25 0.218
Supercontig_1.5 812778 812863 CD_68-1 . + 1856 201.25 0.121 3017 326.94 0.292 2777 248.18 0.363 3890 273.44 0.348
Supercontig_1.1 5142652 5142738 CD_6-1 . + 32 3.43 . 1938 207.57 0.660 162 14.31 0.648 152 10.56 0.792
Supercontig_1.8 1626956 1627100 CD_73-1 . + 10412 666.41 0.525 6398 409.26 0.702 76023 4010.52 0.520 94327 3913.85 0.502
Supercontig_1.3 602819 602915 CD_7-1 . - 136 13.06 . 1448 138.93 0.203 1262 99.86 0.355 820 51.04 0.376
Supercontig_1.4 2223202 2223303 CD_8-1 . - 212 19.35 0.648 735 67.03 0.701 410 30.84 0.598 209 12.36 0.325
Supercontig_1.1 6154517 6154718 HACA_11-1 . - 4495 206.11 0.548 5751 263.55 0.666 4394 166.07 0.296 5040 149.82 0.541
Supercontig_1.7 1637496 1637883 HACA_12-1 . - 25237 601.03 0.334 6226 148.19 0.691 13616 267.27 0.424 15245 235.37 0.558
Supercontig_1.4 718279 718547 HACA_13-1 . - 5838 200.77 0.470 15685 539.09 0.609 976 27.67 0.454 1713 38.19 0.534
Supercontig_1.1 6432063 6432311 HACA_15-1 . - 4143 153.97 0.645 5877 218.28 0.834 12503 382.98 0.709 22209 535.07 0.662
Supercontig_1.10 83830 84025 HACA_17-1 . + 1352 63.90 0.554 4197 198.25 0.596 892 34.75 0.655 1405 43.05 0.494
Supercontig_1.2 583209 583369 HACA_1-1 . - 368 21.20 0.548 1303 75.01 0.742 161 7.64 0.792 549 20.50 0.659
Supercontig_1.4 2635696 2635870 HACA_21-1 . + 5134 271.94 0.546 3436 181.89 0.657 1357 59.24 0.658 2180 74.86 0.548
Supercontig_1.9 1288720 1288926 HACA_28-1 . + 41660 1863.90 0.406 12654 565.81 0.606 14871 548.39 0.511 22552 654.11 0.561
Supercontig_1.6 686649 686808 HACA_2-1 . - 661 38.32 0.629 3740 216.66 0.797 172 8.22 0.796 423 15.90 0.778
Supercontig_1.4 2630706 2630917 HACA_37-1 . - 4862 212.37 0.462 4589 200.33 0.752 1153 41.51 0.599 1793 50.77 0.562
Supercontig_1.1 2049517 2049730 HACA_3-1 . - 4725 204.45 0.594 5303 229.33 0.669 2171 77.43 0.705 5149 144.44 0.599
Supercontig_1.8 261463 261715 HACA_42-1 . - 5017 183.49 0.443 6265 229.00 0.610 3283 98.97 0.396 5455 129.34 0.399
Supercontig_1.5 1067854 1068101 HACA_43-1 . + 1009 37.65 0.419 1813 67.61 0.612 545 16.76 0.633 1865 45.11 0.441
Supercontig_1.8 349426 349545 HACA_48-1 . - 143 11.08 0.655 1269 98.23 0.850 474 30.26 0.583 656 32.94 0.672
Supercontig_1.6 2058656 2058839 HACA_4-1 . + 2288 115.23 0.593 3095 155.78 0.718 2016 83.69 0.604 1989 64.94 0.617
Supercontig_1.9 137514 137733 HACA_53-1 . + 661 27.82 0.383 1164 48.96 0.559 329 11.41 0.612 450 12.28 0.724
Supercontig_1.5 2135736 2135897 HACA_6-1 . + 2466 141.17 0.305 1501 85.88 0.780 8907 420.27 0.555 15513 575.71 0.515
Supercontig_1.1 2044018 2044204 HACA_7-1 . - 7301 361.78 0.360 3235 160.20 0.651 619 25.28 0.536 1555 49.95 0.464
Supercontig_1.4 1729823 1729999 HACA_8-1 . + 393 20.58 0.567 348 18.21 0.805 843 36.39 0.679 562 19.08 0.732
Supercontig_1.2 3384852 3385061 HACA_9-1 . - 7304 322.10 0.400 3292 145.09 0.667 4626 168.14 0.514 6438 184.05 0.591