CLUSTAL W (1.83) multiple sequence alignment abe_U3.1_Supercontig_22_155799,1 GTCGACTTTACTTCAAAGAATCATTTCTATAGTAAA-CGACCCTA aot_U3.1_Supercontig_3_366877,36 GTCGACTTTACTTCAAAGAATCATTTCTATAGTAAA-CGACCCTA trb_U3.1_Supercontig_1_3681548,3 GTCGACTTTACTTCAAAGAATCATTTCTATAGTAAA-CGACCCTA ure_U3.1_Supercontig_2.2_5215779 GTCGACTTTACTTCAAAGAATCATTTCTTCAGTAGT-CGTCCCAC cim_U3.1_Supercontig_3.2_123523, GTCGACTCTACTCTAAAGAATCATTTCTTCAGTAGA-CGTCCCAC cps_U3.1_Supercontig_1.2_148282, GTCGACTCTACTCTAAAGAATCATTTCTTCAGTAGA-CGTCCCAC aap_U3.1_Contig1423_987,1250___3 GACGACT-TACTTCTAAGAATCATTTCTATAGTATA-CGTCTC-C aap_U3.2_Contig98_492,743_-_362 GACGACT-TACTTCTAAGAATCATTTCTATAGTAAA-CGTCTC-C tac_U3.1_scaffold_13_620149,6204 AGCGACTCTACTTCAAAGAATCACTTCATTAGTAGA-CGTCTT-C acp_U3.1_Supercontig_1.15_70553, GTCGACTTTACTTCAAAGAATCATTTCTATAGTAAATCGTCCCAC pbr_U3.1_Supercontig_1.5_2136912 GTCGACTTTACTTCAAAGAATCATTTCTATAGTAAATCGTCCCAC tau_U3.1_scaffold_16_407464,4077 AGCGACTCTACTTCAAAGAATCAATTCTATAGTAGA-CGCATCCC and_U3.1_VIII_3287847,3288125___ AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCTC and_U3.2_V_2435879,2436155_-_398 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCTC ate_U3.1_adopted_1.7_218218,2185 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCTCTC pfe_U3.1_scaffold_3_238275,23854 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCAC pox_U3.1_scaffold_3_2289090,2289 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCAC pox_U3.2_scaffold_7_3986094,3986 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCAC pbe_U3.1_scaffold_2_1732113,1732 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCTCCT pbe_U3.2_scaffold_1_1600465,1600 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCTCCT pex_U3.1_scaffold_7_908590,90886 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCCT pla_U3.2_scaffold_8_54412,54659_ AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCTCT pla_U3.1_scaffold_2_1960338,1960 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCCT pcy_U3.1_scaffold_4_924484,92475 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCCT pex_U3.2_scaffold_1_6960432,6960 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCCT pcy_U3.2_scaffold_4_2922612,2922 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCCT afl_U3.1_EQ963481_1382473,138275 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCAC aor_U3.1_II_1362245,1362527___40 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCAC afl_U3.2_EQ963475_1122270,112255 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCAC aor_U3.2_III_1106474,1106756_-_4 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCAC ani_U3.1_III_2090761,2091056_-_4 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCAC ani_U3.2_II_3746131,3746426_-_42 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCAC acl_U3.1_adopted_368_1726981,172 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCAC afu_U3.1_VI_2847001,2847303___43 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCAC nfi_U3.1_adopted_9201_2962614,29 AGCGACTCTACTTCAAAGAATCACTT-TAGAGTAGA-CGTCCCAC abe_U3.1_Supercontig_22_155799,1 CTCTGTAGTTTTTACGAAAGCGACAAGAGTCCCAACCTTGCTGAT aot_U3.1_Supercontig_3_366877,36 CTCTGTAGTTTTTACGAAAGCGACATGAGTCCCAACCTTGCTGAT trb_U3.1_Supercontig_1_3681548,3 CTCTGTAGTTTTTACGAAAGCGACAAGAGTCCCAACCTTGCTGAT ure_U3.1_Supercontig_2.2_5215779 -TCTGTATTTCGTACTAGAGGGGTAAATTCTCAATCC-TGCTGAT cim_U3.1_Supercontig_3.2_123523, -TCTGTATTTCTTATTACAGGGGTAAA--CTTCAATCCTGCTGAT cps_U3.1_Supercontig_1.2_148282, -TCTGTATTTCTTATTACAGGGGTAAA--CTTCAATCCTGCTGAT aap_U3.1_Contig1423_987,1250___3 TTCTGATTTTTTCGCTTTAGCGACAGAATCCCCACTCTTGCGGAT aap_U3.2_Contig98_492,743_-_362 TTCTGATTTTTTCGCTTTAGCGACAGAATCCCCACTCTTGCGGAT tac_U3.1_scaffold_13_620149,6204 CGCTGTTTTTTCGAAAATAGCCACATA--TCCCACCCTTGCTGAT acp_U3.1_Supercontig_1.15_70553, --CTGATTTTTTCGCATTAGCGACTGAATCCCCAACCTTGCTGAT pbr_U3.1_Supercontig_1.5_2136912 --CTGATTTTTTCGCACTAGCGACTGAATCCCCAACCTTGCTGAT tau_U3.1_scaffold_16_407464,4077 AACTGGTTTTCCAAACC-AGCCACAGAATCTCCAACCTTGCTGAT and_U3.1_VIII_3287847,3288125___ AT-TGAGCTCATCTAATGAGCCAC--ACCCCCAACCCTTGCTGAT and_U3.2_V_2435879,2436155_-_398 AT-TGAGCTCATCTAATGAGCCAC--ACCCCCAACCCTTGCTGAT ate_U3.1_adopted_1.7_218218,2185 AT-TGAGCTTTTCTAAAAAGCCACAGAATCTCCACCCTTGCTGAT pfe_U3.1_scaffold_3_238275,23854 TTCTAAGCTCTTTAAAAGAGCCACAGAATCTCCACCCTTGCTGAT pox_U3.1_scaffold_3_2289090,2289 TTCTAAGCTCTTTAAACGAGCCACAGAATCTTCACCCTTGCTGAT pox_U3.2_scaffold_7_3986094,3986 TTCTAAGCTCTTTAAACGAGCCACAGAATCTTCACCCTTGCTGAT pbe_U3.1_scaffold_2_1732113,1732 TTCTAAGCTCTTTAAAAGAGCCACAGAATCTCCACCCTTGCTGAT pbe_U3.2_scaffold_1_1600465,1600 TTCTAAGCTCTTTAAAAGAGCCACAGAATCTCCACCCTTGCTGAT pex_U3.1_scaffold_7_908590,90886 TTCTAAACTCTTTAAAAGAGCCACAGAATCTCCACCCTTGCTGAT pla_U3.2_scaffold_8_54412,54659_ TTCTAAACTCTTTAAAAGAGCCACAGAATCTCCACCCTTGCTGAT pla_U3.1_scaffold_2_1960338,1960 TTCTAAGCTCTTTAAAAGAGCCACAGAATCTCCACCCTTGCTGAT pcy_U3.1_scaffold_4_924484,92475 TTCTAAACTCTTTAAAAGAGCCACAGAATCTCCACCCTTGCTGAT pex_U3.2_scaffold_1_6960432,6960 TTCTAAACTCTTTAAAAGAGCCACAGAATCTCCACCCTTGCTGAT pcy_U3.2_scaffold_4_2922612,2922 TTCTAAACTCTTTAAAAGAGCCACAGAATCTCCACCCTTGCTGAT afl_U3.1_EQ963481_1382473,138275 CTCTGAACTCTTCTAAAGAGCTACAGAATCTCCACCCTTGCTGAT aor_U3.1_II_1362245,1362527___40 CTCTGAACTCTTCTAAAGAGCTACAGAATCTCCACCCTTGCTGAT afl_U3.2_EQ963475_1122270,112255 CTCTGAACTCTTCTAAAGAGCTACAGAATCTCCACCCTTGCTGAT aor_U3.2_III_1106474,1106756_-_4 CTCTGAACTCTTCTAAAGAGCTACAGAATCTCCACCCTTGCTGAT ani_U3.1_III_2090761,2091056_-_4 CTCTGAGCTCTTCTAAAGAGCCACAGAATCTCCACCCTTGCTGAT ani_U3.2_II_3746131,3746426_-_42 CTCTGAGCTCTTCTAAAGAGCCACAGAATCTCCACCCTTGCTGAT acl_U3.1_adopted_368_1726981,172 CTCTGAGCTCTTCTAAAGAGCCACAGAATCTCCACCCTTGCTGAT afu_U3.1_VI_2847001,2847303___43 CTCTGAGCTCTTCTAAAGAGCCACAGAATCTCCACCCTTGCTGAT nfi_U3.1_adopted_9201_2962614,29 CTCTGAGCTCTTCTAAAGAGCCACAGAATCTCCACCCTTGCTGAT abe_U3.1_Supercontig_22_155799,1 GACCCTAATGTCCTCGATGCCCTAAAGTGAAG------------- aot_U3.1_Supercontig_3_366877,36 GACCCTTATGTCCTCGATACCCTAAAGTGAAG------------- trb_U3.1_Supercontig_1_3681548,3 GACCCTAATGTCCTCGATGCCCTAAAGTGAAG------------- ure_U3.1_Supercontig_2.2_5215779 GACCACCATGCCCTCGATGCCCTAAAGTGAAG------------- cim_U3.1_Supercontig_3.2_123523, GACCACCATGTCCTCGATGCCCTAAAGTGAAG------------- cps_U3.1_Supercontig_1.2_148282, GACCACCATGTCCTCGATGCCCTAAAGTGAAG------------- aap_U3.1_Contig1423_987,1250___3 GACC-TTATGTCCAGTATGCCCTAAAGTGAAA------------- aap_U3.2_Contig98_492,743_-_362 GACC-TTATGTCTTCGACGCCCTAAAGTGAAG------------- tac_U3.1_scaffold_13_620149,6204 GACCTTCATGTCCTCGATACCCCAAAGTGAAATTTTGTGGCATTC acp_U3.1_Supercontig_1.15_70553, GACCACCATGTCCACAGTGCCCTAGAGTGAAA------------- pbr_U3.1_Supercontig_1.5_2136912 GACCACCATGTCCCCAGCGCCCTAGAGTGAAG------------- tau_U3.1_scaffold_16_407464,4077 GACCTCGAGGTCCTCGATGCCCTAAAGTGAAGCTGCCCTCTGGG- and_U3.1_VIII_3287847,3288125___ GACTTCTATGTCCTCGATGCCCTAAAGTGAAG------------- and_U3.2_V_2435879,2436155_-_398 GACTTCTATGTCCTCGATGCCCTAAAGTGAAA------------- ate_U3.1_adopted_1.7_218218,2185 GACTGCTATGTCCTCGATGCCCTAAAGTGAAG------------- pfe_U3.1_scaffold_3_238275,23854 GACTGCTATGTCCTCGATGCCCTAAAGTGAAG------------- pox_U3.1_scaffold_3_2289090,2289 GACTGCTATGTCCTCGATGCCCTAAAGTGAAA------------- pox_U3.2_scaffold_7_3986094,3986 GACTGCTATGTCCTCGATGCCCTAAAGTGAAA------------- pbe_U3.1_scaffold_2_1732113,1732 GACTGC-ATGTCCTCGGTGCCCTAAAGTGAAA------------- pbe_U3.2_scaffold_1_1600465,1600 GACTGC-ATGTCCTCGATGCCCTAAAGTGAAA------------- pex_U3.1_scaffold_7_908590,90886 GACTAC-ATGTCCTCGATGCCCTAAAGTGAAA------------- pla_U3.2_scaffold_8_54412,54659_ GACTA-TATGTCCTCGATGCCCTAAAGTGAAA------------- pla_U3.1_scaffold_2_1960338,1960 GACTAC-ATGTCCTCGATGCCCTAAAGTGAAA------------- pcy_U3.1_scaffold_4_924484,92475 GACTAC-ATGTCCTCGATGCCCTAAAGTGAAA------------- pex_U3.2_scaffold_1_6960432,6960 GACTAC-ATGTCCTCGACGCCCTAAAGTGAAA------------- pcy_U3.2_scaffold_4_2922612,2922 GACTAC-ATGTCCTCGATGCCCTAAAGTGAAA------------- afl_U3.1_EQ963481_1382473,138275 GACTTCCATGTCCTCAATGCCCTAAAGTGAAG------------- aor_U3.1_II_1362245,1362527___40 GACTTCCATGTCCTCAATGCCCTAAAGTGAAG------------- afl_U3.2_EQ963475_1122270,112255 GACTTCTATGTCCTCAATGCCCTAAAGTGAAG------------- aor_U3.2_III_1106474,1106756_-_4 GACTTCTATGTCCTCAATGCCCTAAAGTGAAG------------- ani_U3.1_III_2090761,2091056_-_4 GACTGCTATGTCCTCGATGCCCTAAAGTGAAG------------- ani_U3.2_II_3746131,3746426_-_42 GACTGCTATGTCCTCGATGCCCTAAAGTGAAG------------- acl_U3.1_adopted_368_1726981,172 GACTGCTATGTCCTCGATGCCCTAAAGTGAAG------------- afu_U3.1_VI_2847001,2847303___43 GACTGCTATGTCCTCGATGCCCTAAAGTGAAG------------- nfi_U3.1_adopted_9201_2962614,29 GACTGCTATGTCCTCGATACCCTAAAGTGAAG------------- abe_U3.1_Supercontig_22_155799,1 ------------------CCTTTTT-TACTCTCGCCTATACTTCG aot_U3.1_Supercontig_3_366877,36 ------------------CCTTTTTTTACTCTCGTTTATATTTCG trb_U3.1_Supercontig_1_3681548,3 ------------------CCTTTTT-TATTCTCGCCTATACTTCG ure_U3.1_Supercontig_2.2_5215779 ------------------CCGTGA--TACTCCCGCCTCGACCCTG cim_U3.1_Supercontig_3.2_123523, ------------------CCGTTA--TACTCCCGCCTCGACCCTG cps_U3.1_Supercontig_1.2_148282, ------------------CCGTTA--TACTCCCGCCTCGACCCTG aap_U3.1_Contig1423_987,1250___3 ------------------CCGTG---TGTTCCCGCCTCGAC---- aap_U3.2_Contig98_492,743_-_362 ------------------CCGATGTTTACTTCC------------ tac_U3.1_scaffold_13_620149,6204 TGTTTTTTAGCAGTTTGTCCGTT---TACTCCCGCCTCGA----- acp_U3.1_Supercontig_1.15_70553, ------------------CC-TGTTATACTCTCGTCCGCATCGCT pbr_U3.1_Supercontig_1.5_2136912 ------------------CCTTTTTATACTCCCGCCTCGAT---- tau_U3.1_scaffold_16_407464,4077 -------------------C-TGTG-TACTCCCGCCTCGA----- and_U3.1_VIII_3287847,3288125___ ------------------CCGTGTT-TACTCCCGCCTCGACCTTG and_U3.2_V_2435879,2436155_-_398 ------------------CCGTGTT-TATTCCCGCCTCGACCTTG ate_U3.1_adopted_1.7_218218,2185 ------------------CCGTGTT-TACTTCCGCCGCGACCGCG pfe_U3.1_scaffold_3_238275,23854 ------------------CCTTTT--GACTCCCGCCTCGAC---- pox_U3.1_scaffold_3_2289090,2289 ------------------CCGTTTG-GACTTCCGATTCGAC---- pox_U3.2_scaffold_7_3986094,3986 ------------------CCGTTTG-GACTTCCGATTCGAC---- pbe_U3.1_scaffold_2_1732113,1732 ------------------CCTTTT--TACTTCCGCCTCGAC---- pbe_U3.2_scaffold_1_1600465,1600 ------------------CCTTCT--TACTTCCGCCTCGAC---- pex_U3.1_scaffold_7_908590,90886 ------------------CCTTTT--TACTCCCGCCTCGAC---- pla_U3.2_scaffold_8_54412,54659_ ------------------CCTTTT--TACTCCCGCTTCGAC---- pla_U3.1_scaffold_2_1960338,1960 ------------------CCTTTT--TACTCCCGCCTCGAC---- pcy_U3.1_scaffold_4_924484,92475 ------------------CCTTTT--TACTCCCGCCTCGAC---- pex_U3.2_scaffold_1_6960432,6960 ------------------CCTTTT--TACTCCCGCCTCGAC---- pcy_U3.2_scaffold_4_2922612,2922 ------------------CCTTTT--TACTTCCGCCTCGAC---- afl_U3.1_EQ963481_1382473,138275 ------------------CCGTGTT-TACTTCCGCCTCGAT---- aor_U3.1_II_1362245,1362527___40 ------------------CCGTGTT-TACTTCCGCCTCGATAGC- afl_U3.2_EQ963475_1122270,112255 ------------------CCGTGTT-TACTTCCGTCTCGAC---- aor_U3.2_III_1106474,1106756_-_4 ------------------CCGTGTT-TACTTCCGCCTCGAC---- ani_U3.1_III_2090761,2091056_-_4 ------------------CCGTT-T-TACTTCCGACTCGACCTTG ani_U3.2_II_3746131,3746426_-_42 ------------------CCGTT-T-TACTTCCGACTCGACCTTG acl_U3.1_adopted_368_1726981,172 ------------------CCGTTCT-TACTCCCGCCTCGACCCCG afu_U3.1_VI_2847001,2847303___43 ------------------CCGTTCT-TACTCCCGATTCGACCTTG nfi_U3.1_adopted_9201_2962614,29 ------------------CCGTTCT-TACTCCCGACTCGACCTTG abe_U3.1_Supercontig_22_155799,1 ACAGTGATGATGAT-----ACTTGACAATGCTTCGGTGTTTGATT aot_U3.1_Supercontig_3_366877,36 GCAGACTTGATGAT-----ACATGATTACGCTTCGGCGTTTGATT trb_U3.1_Supercontig_1_3681548,3 ACAGTGATGATGAT-----ACTTGACAATGCCTCGGTGTTTGATT ure_U3.1_Supercontig_2.2_5215779 CCCGAGATACTATCGCGTTCTCTGGAGACCTTACAGTCTCTG--- cim_U3.1_Supercontig_3.2_123523, CTCGAGATCGCCCT-CGCGTTTTCTGGATACCCTCTGTGGCTTCC cps_U3.1_Supercontig_1.2_148282, CTCGAGATCGCCCT-CGCGTTTTCTGGATACCCTCTATGGCTTCC aap_U3.1_Contig1423_987,1250___3 ----------------------TTCGATCAGATCTG--------- aap_U3.2_Contig98_492,743_-_362 ----------------------------------TGTGCTCCTGC tac_U3.1_scaffold_13_620149,6204 -----------------------------GATTGTGTT------- acp_U3.1_Supercontig_1.15_70553, ACGGGTTATATGATGCTGGAGGCTTCGGCCAC--TGTTTCGT--- pbr_U3.1_Supercontig_1.5_2136912 ----------------------------------TGCTTCGGTCA tau_U3.1_scaffold_16_407464,4077 -----------CCGCGCGAGTCTTCGGGACATTGTGTTACGACCC and_U3.1_VIII_3287847,3288125___ TC-----------------TTCTCCGGTACAAACTGCTTTGGC-- and_U3.2_V_2435879,2436155_-_398 TC-----------------TTTCACGAACGAAC-TGCTTCGAC-- ate_U3.1_adopted_1.7_218218,2185 TC--------CGTT-TCCGCATCTTGATACGCCTTGTCTTCGGAC pfe_U3.1_scaffold_3_238275,23854 ----------------------------------TATTACG---- pox_U3.1_scaffold_3_2289090,2289 ----------------------------------TGAC------- pox_U3.2_scaffold_7_3986094,3986 -------------------------TGACACGCGTGCTTCG---- pbe_U3.1_scaffold_2_1732113,1732 ----------------------------------TGTCACGC--- pbe_U3.2_scaffold_1_1600465,1600 ----------------------------------TGTCACGC--- pex_U3.1_scaffold_7_908590,90886 ----------------------------------TGTCACGC--- pla_U3.2_scaffold_8_54412,54659_ ----------------------------------TGTCACGC--- pla_U3.1_scaffold_2_1960338,1960 ----------------------------------TGTCACGC--- pcy_U3.1_scaffold_4_924484,92475 ----------------------------------TGTCACGC--- pex_U3.2_scaffold_1_6960432,6960 ----------------------------------TGTCACGC--- pcy_U3.2_scaffold_4_2922612,2922 ----------------------------------TGTCACGC--- afl_U3.1_EQ963481_1382473,138275 -----------AGC-TGGTATCTGCGAACGACT-TGCTTCGGT-- aor_U3.1_II_1362245,1362527___40 ---------------TGGTATCTGCGAACGACT-TGCTTCGGT-- afl_U3.2_EQ963475_1122270,112255 -----------GGT-TGGTATCTGCGAACGACT-CGCTTCGGT-- aor_U3.2_III_1106474,1106756_-_4 -----------GGT-TGGTATCTGCGAACGACT-CGCTTCGGT-- ani_U3.1_III_2090761,2091056_-_4 ----------CATT-TGCACGCTCTGTTACAATCTGTTTTCGGAT ani_U3.2_II_3746131,3746426_-_42 ----------CATT-TGCACGCTCTGTTACAATCTGTCTTCGGAT acl_U3.1_adopted_368_1726981,172 CG-------GCGCT-CCGACGCTCACAACGATTCTGTCGCAAGAC afu_U3.1_VI_2847001,2847303___43 CT-------TCGTT-CCGACGCTCTGAACGACT-TGTTGCAAAAC nfi_U3.1_adopted_9201_2962614,29 CT-------TCGTT-CCGACGCTCTGAACGACT-TGTTGCAAAAC abe_U3.1_Supercontig_22_155799,1 GAATCTCATCCTG-----------------------------TTG aot_U3.1_Supercontig_3_366877,36 GTATCTCATCCTG-----------------------------TTG trb_U3.1_Supercontig_1_3681548,3 GAATCTCATCCTG-----------------------------TTG ure_U3.1_Supercontig_2.2_5215779 -AAGCGTGTGTGCATTCTTG-------------------GGCAAT cim_U3.1_Supercontig_3.2_123523, GAAGTGCGGGCGGATGCATCTCGGGCTAC-------T-----TGG cps_U3.1_Supercontig_1.2_148282, GAAGCGCGGGCGGATGCATC----TCGGG-------CTATC-TGG aap_U3.1_Contig1423_987,1250___3 -GATTCTGTCCGGGTTCTGTC---------------------GCT aap_U3.2_Contig98_492,743_-_362 AGTTCTCTTTTTGAG---------------------------CTG tac_U3.1_scaffold_13_620149,6204 -AAGCTTCTTGTTGTCCTCACGGATATACAGAACGACGCGCTTTT acp_U3.1_Supercontig_1.15_70553, -ATACTTGTC--------------------------------TCG pbr_U3.1_Supercontig_1.5_2136912 CCGATTTCGTGTGTCTGCT-----------------------TCA tau_U3.1_scaffold_16_407464,4077 TCCGCAAGGGGGGATTGTGACCGGGTCTCGGGCGCTTGCGA-TGT and_U3.1_VIII_3287847,3288125___ -GGGCTTGTTCCGAGT--------------------TGGCGCCTG and_U3.2_V_2435879,2436155_-_398 -ATGCTCGTTTCGAGT--------------------TGGCG-CTG ate_U3.1_adopted_1.7_218218,2185 -GAGCGTGTGTCGGGTGTCT----GGGGC-------GGGCA-TCG pfe_U3.1_scaffold_3_238275,23854 -CGTCCTGCTTGCAGGGTC-----------------AGTGTTTTG pox_U3.1_scaffold_3_2289090,2289 -ACGCGTGCTTCGGCGTCTGTGTG------------------TCG pox_U3.2_scaffold_7_3986094,3986 -GCGTCTGTGTG------------------------------TCG pbe_U3.1_scaffold_2_1732113,1732 -GTGCTGTTTACAGTGTCTGTGTT------------------TCG pbe_U3.2_scaffold_1_1600465,1600 -GTGCTGTTCGCAGTGTCTGTGTT------------------TCG pex_U3.1_scaffold_7_908590,90886 -GTGCTGTCCGCAGTGTCTGTGTT------------------TCG pla_U3.2_scaffold_8_54412,54659_ -GTGCTGTTCGCAGTGTCTGTGTT------------------TCG pla_U3.1_scaffold_2_1960338,1960 -GTGCTGTTTGCAGTGTCTGTGTT------------------TCG pcy_U3.1_scaffold_4_924484,92475 -GTGCTGTCCGCAGTGTCTGTGTT------------------TCG pex_U3.2_scaffold_1_6960432,6960 -GTGCTGTCCGCAGTGTCTGTGTT------------------TCG pcy_U3.2_scaffold_4_2922612,2922 -GTGCTGTTCGCAGTGTCTGTGTT------------------TCG afl_U3.1_EQ963481_1382473,138275 -GAGCTTGTTCGAGTGCCT-----------------------TTT aor_U3.1_II_1362245,1362527___40 -GAGCTTGTTCGAGTGCCT-----------------------TTT afl_U3.2_EQ963475_1122270,112255 -GAGCTTGTTCGAGTGCCT-----------------------CTC aor_U3.2_III_1106474,1106756_-_4 -GAGCTTGTTCGAGTGCCT-----------------------CTC ani_U3.1_III_2090761,2091056_-_4 -AGACTTGTTTCGGGTGTCG----G-----------TG-TG-ATG ani_U3.2_II_3746131,3746426_-_42 -GGACTTGTTTCGGGTGTCG----G-----------TG-CG-ATG acl_U3.1_adopted_368_1726981,172 GGAGTCTGTTTGGGCTGTTG----GTTGC-------TG-CG-ATG afu_U3.1_VI_2847001,2847303___43 -AAGCTTGTTCGGGCTGTTG----GATGT-------TG-CT-CTG nfi_U3.1_adopted_9201_2962614,29 -GAGCTTGTTCGGGCTGTTG----GAGGT-------TG-CT-CTG abe_U3.1_Supercontig_22_155799,1 ATTTAGAGAGTGGTGATGATCTTTACCTCGTCGTGGCGTC---TG aot_U3.1_Supercontig_3_366877,36 ATCTAGAGAGTGGTGATGATCTTGACCTTGTCGTGGCGTC---TG trb_U3.1_Supercontig_1_3681548,3 ATTTAGAGAGTGGTGATGATCTTTACCTTGCCGTGGCGTC---TG ure_U3.1_Supercontig_2.2_5215779 GTCCAGGGAGTGGTGATGATCTTGACCTAACAGAGGCGTC-TCTG cim_U3.1_Supercontig_3.2_123523, GTCTAGGGAGTGGTGATGATCTTGACCTAGTGGATGTGCCTTTTG cps_U3.1_Supercontig_1.2_148282, GTCCAGGGAGTGGTGATGATCTTGACCTAGTGGATGTGCCTTTTG aap_U3.1_Contig1423_987,1250___3 GTCCAGGGAATGGTGATGATCTTGACCTTGCGCTAGCGTC--TTG aap_U3.2_Contig98_492,743_-_362 TAGAAGGGAGTGGTGATGATCTTGACCTTACACTGGTGAC--TTG tac_U3.1_scaffold_13_620149,6204 CTCTAGGGAGTGGTGATGATCTTTACCTTGTTTTGGCGTC--TTG acp_U3.1_Supercontig_1.15_70553, ATCAAGGGAGTGGTGATGATCTTGACCTTGCCCTGGCGTC--TTG pbr_U3.1_Supercontig_1.5_2136912 ATCCAGGGAGTGGTGATGATCTTGACCTTGCCTTGGCGTC--TTG tau_U3.1_scaffold_16_407464,4077 GTCTAGGGAGTGGTGATGATCTTTACCTTGTCTCGGCGTC--TTG and_U3.1_VIII_3287847,3288125___ GTCTAGGGAGTGGTGATGATCTTGACCTTGTCGTGGCGTC--TTG and_U3.2_V_2435879,2436155_-_398 GTCTAGGGAATGGTGATGATCTTAACCTTGTCGTGGCGTC--TTG ate_U3.1_adopted_1.7_218218,2185 GTCAAGGGAGTGGTGATGATCTTGACCTTGTCTTGACGTC---GG pfe_U3.1_scaffold_3_238275,23854 GTCTAGGGAGTGGTGATGATCTTTGCCTGGTCTCGGCGTC---TG pox_U3.1_scaffold_3_2289090,2289 GTCCAGGGAGTGGTGATGATCTTGACCTGGTCTCGGCGTC--TTG pox_U3.2_scaffold_7_3986094,3986 GTCCAGGGAGTGGTGATGATCTTGACCTGGTCTCGGCGTC--TTG pbe_U3.1_scaffold_2_1732113,1732 GTCCAGGGAGTGGTGATGATCTTGACCTGGTCTCGGCGTC---TG pbe_U3.2_scaffold_1_1600465,1600 GTCCAGGGAGTGGTGATGATCTTGACCTGGTCTCGATGTC---TG pex_U3.1_scaffold_7_908590,90886 GTCCAGGGAGTGGTGATGATCTTGACCTGGTCTCGATGTC---TG pla_U3.2_scaffold_8_54412,54659_ GTCCAGGGAGTGGTGATGATCTTGACCTGGTCTCGACGTC---TG pla_U3.1_scaffold_2_1960338,1960 GTCTAGGGAGTGGTGATGATCTTGACCTGGTCTCGACGTC--TTG pcy_U3.1_scaffold_4_924484,92475 GTCTAGGGAGTGGTGATGATCTTGACCTGGTCTCGACGTC--TTG pex_U3.2_scaffold_1_6960432,6960 GTCCAGGGAGTGGTGATGATCTTGACCTGGTCTCGACGTC--TTG pcy_U3.2_scaffold_4_2922612,2922 GTCCAGGGAGTGGTGATGATCTTGACCTGGTCTCGGCGTC---TG afl_U3.1_EQ963481_1382473,138275 GTCCAGGGAGTGGTGATGATCTTTACCTTGTCTTGACGTC--TTG aor_U3.1_II_1362245,1362527___40 GTCCAGGGAGTGGTGATGATCTTTACCTTGTCTTGACGTC--TTG afl_U3.2_EQ963475_1122270,112255 GTCCAGGGAGTGGTGATGATCTTTACCTTGTCTCGATGTC--TTG aor_U3.2_III_1106474,1106756_-_4 GTCCAGGGAGTGGTGATGATCTTTACCTTGTCTCGATGTC--TTG ani_U3.1_III_2090761,2091056_-_4 GTCCAGGGAGTGGTGATGATCTTTACCTTGTCATGATGTC--TTG ani_U3.2_II_3746131,3746426_-_42 GTCCAGGGAGTGGTGATGATCTTTACCTTGTCATGATGTC--TTG acl_U3.1_adopted_368_1726981,172 GTCCAGGGAGTGGTGATGATCTTGACCTTGTCCTGACGTC--TTG afu_U3.1_VI_2847001,2847303___43 GTCCAGGGAGTGGTGATGATCTTGACCTTGTCCTGACGTC--TAG nfi_U3.1_adopted_9201_2962614,29 GTCCAGGGAGTGGTGATGATCTTGACCTTGTCCTGACGTC--TAG abe_U3.1_Supercontig_22_155799,1 ACTTCGGTCGGCCT-GGCAAGGTGGGTGTCGAGGAGGTCTGAAAG aot_U3.1_Supercontig_3_366877,36 ACTTCGGTCGGCCT-GGCAAGGTGGGCGTCGAGGAGGTCTGAAAG trb_U3.1_Supercontig_1_3681548,3 ACTTCGGTCGGCCT-GGCAAGGTGGGTGTCGAGGAGGTCTGAAAG ure_U3.1_Supercontig_2.2_5215779 ACTTCGGTCGGTCT-CTGTGGGTGGGTGTCGAGGAGGTCTGAAGG cim_U3.1_Supercontig_3.2_123523, ACTTCGGTCGGTCT-CCCTAGGTGGGCGTCGAGGAGGTCTGAAGG cps_U3.1_Supercontig_1.2_148282, ACTTCGGTCGGTCT-CCCTAGGTGGGCGTCGAGGAGGTCTGAAGG aap_U3.1_Contig1423_987,1250___3 ACTTCGGTCGGCTG-CGTCTGGTGGGTGTACTGGAGGTCTGAAAG aap_U3.2_Contig98_492,743_-_362 ACTTCGGTCGGCCGTGTTTTGGTGGGTGTCGGAGAGGTCTGAAAG tac_U3.1_scaffold_13_620149,6204 ACTTCGGTCGGCTG-GACTTGGTGGGTGTCGAGGAGGTCTGAAAG acp_U3.1_Supercontig_1.15_70553, ACTTCGGTCGGCCT-GGTTTGGTGGGCACTGTGGAGGTCTGAAAG pbr_U3.1_Supercontig_1.5_2136912 ACTTCGGTCGGCCT-GGTTTGGTGGGCGCTGTGGAGGTCTGAAAG tau_U3.1_scaffold_16_407464,4077 ACTTCGGTCGGTCG-GACATGGTGGGTGTCGAGGAGGTCTGAAAG and_U3.1_VIII_3287847,3288125___ ACTTCGGTCGGCCT-GACTTGGTGGGTGTCGAGGAGGTCTGAAAG and_U3.2_V_2435879,2436155_-_398 ACTTCGGTCGGCCT-GACTTGGTGGGTATCGAGGAGGTCTGAAAG ate_U3.1_adopted_1.7_218218,2185 ACTTCGGTCGGTCG-GACTTGGTGGGTGTCGAGGAGGTCTGAAAG pfe_U3.1_scaffold_3_238275,23854 ACTTCGGTCGGCTG-GTCCTGGTGGGTGTCGAGGAGGTCTGAAAG pox_U3.1_scaffold_3_2289090,2289 ACTTCGGTCGGCTG-GTCCTGGTGGGTGTCGAGGAGGTCTGAAAG pox_U3.2_scaffold_7_3986094,3986 ACTTCGGTCGGCTG-GTCCTGGTGGGTGTCGAGGAGGTCTGAAAG pbe_U3.1_scaffold_2_1732113,1732 ATTTCGGTCGGTCG-GTCCTGGTGGGTGTCGAGGAGGTCTGAAAG pbe_U3.2_scaffold_1_1600465,1600 ACTTCGGTCGGTCG-GTCCTGGTGGGTGTCGAGGAGGTCTGAAAG pex_U3.1_scaffold_7_908590,90886 ACTTCGGTCGGTCG-GTCCTGGTGGGTGTCGAGGAGGTCTGAAAG pla_U3.2_scaffold_8_54412,54659_ ACTTCGGTCGGTCG-GTCCTGGTGGGTGTCGAGGAGGTCTGAAAG pla_U3.1_scaffold_2_1960338,1960 ACTTCGGTCGGTCG-GTCCTGGTGGGTGTCGAGGAGGTCTGAAAG pcy_U3.1_scaffold_4_924484,92475 ACTTCGGTCGGTCG-GTCCTGGTGGGTGTCGAGGAGGTCTGAAAG pex_U3.2_scaffold_1_6960432,6960 ACTTCGGTCGGTCG-GTCCTGGTGGGTGTCGAGGAGGTCTGAAAG pcy_U3.2_scaffold_4_2922612,2922 ACTTCGGTCGGTCG-GTCCTGGTGGGTGTCGAGGAGGTCTGAAAG afl_U3.1_EQ963481_1382473,138275 ACTTCGGTCGGTCA-GATTTGGTGGGTGTTGAGGAGGTCTGAAAG aor_U3.1_II_1362245,1362527___40 ACTTCGGTCGGTCA-GATTTGGTGGGTGTTGAGGAGGTCTGAAAG afl_U3.2_EQ963475_1122270,112255 ATTTCGGTCGGTCG-GACTTGGTGGGTGTTGAGGAGGTCTGAAAG aor_U3.2_III_1106474,1106756_-_4 ATTTCGGTCGGTCG-GACTTGGTGGGTGTTGAGGAGGTCTGAAAG ani_U3.1_III_2090761,2091056_-_4 ACTTCGGTCGGTCG-GACTTGGTGGGTGTCGAGGAGGTCTGAAAG ani_U3.2_II_3746131,3746426_-_42 ACTTCGGTCGGTCG-GACTTGGTGGGTGTCGAGGAGGTCTGAAAG acl_U3.1_adopted_368_1726981,172 ACTTCGGTCGGTCG-GATTTGGTGGGCGTCGAGGAGGTCTGAAAG afu_U3.1_VI_2847001,2847303___43 ACTTCGGTCGGTCG-GACTTGGTGGGTGTCGAGGAGGTCTGAAAG nfi_U3.1_adopted_9201_2962614,29 ACTTCGGTCGGTCG-GACTTGGTGGGTATCGAGGAGGTCTGAAAG abe_U3.1_Supercontig_22_155799,1 GT aot_U3.1_Supercontig_3_366877,36 GT trb_U3.1_Supercontig_1_3681548,3 GT ure_U3.1_Supercontig_2.2_5215779 AT cim_U3.1_Supercontig_3.2_123523, AT cps_U3.1_Supercontig_1.2_148282, AT aap_U3.1_Contig1423_987,1250___3 AG aap_U3.2_Contig98_492,743_-_362 AG tac_U3.1_scaffold_13_620149,6204 GC acp_U3.1_Supercontig_1.15_70553, GT pbr_U3.1_Supercontig_1.5_2136912 GT tau_U3.1_scaffold_16_407464,4077 GT and_U3.1_VIII_3287847,3288125___ GC and_U3.2_V_2435879,2436155_-_398 GC ate_U3.1_adopted_1.7_218218,2185 GT pfe_U3.1_scaffold_3_238275,23854 GT pox_U3.1_scaffold_3_2289090,2289 GT pox_U3.2_scaffold_7_3986094,3986 GT pbe_U3.1_scaffold_2_1732113,1732 GT pbe_U3.2_scaffold_1_1600465,1600 GT pex_U3.1_scaffold_7_908590,90886 GT pla_U3.2_scaffold_8_54412,54659_ GT pla_U3.1_scaffold_2_1960338,1960 GT pcy_U3.1_scaffold_4_924484,92475 GT pex_U3.2_scaffold_1_6960432,6960 GT pcy_U3.2_scaffold_4_2922612,2922 GT afl_U3.1_EQ963481_1382473,138275 GT aor_U3.1_II_1362245,1362527___40 GT afl_U3.2_EQ963475_1122270,112255 GT aor_U3.2_III_1106474,1106756_-_4 GT ani_U3.1_III_2090761,2091056_-_4 GT ani_U3.2_II_3746131,3746426_-_42 GT acl_U3.1_adopted_368_1726981,172 GT afu_U3.1_VI_2847001,2847303___43 GT nfi_U3.1_adopted_9201_2962614,29 GT