CLUSTAL W (1.83) multiple sequence alignment abi_U3.1_scaffold_17_263518,2637 TTAGAACATACTC-GAACAGGATC-TGTT-TACAGAAACTGACCG pos_U3.1_scaffold_05_1058485,105 TTAGAACATACTC-AGCTAGGATC-TATTCTATAGAAACTAACTC pos_U3.2_scaffold_05_631542,6317 TTAGAACATACTC-AGCTAGGATC-TATTCTATAGAAACTAACTC cci_U3.2_scaffold_17_64279,64492 TCAGAACATACTC-GAACAGGATC-TGTT-TACAGAAACTGACCG cci_U3.1_scaffold_173_28928,2915 TCAGAACATACTC-GAACAGGATC-TGTT-TACAGAAACTGACCG sco_U3.1_scaffold_5_503574,50379 CCAGAACATACTC-AGCTAGGATC-TTTT-TATAGGTTCTAACCG sco_U3.2_scaffold_8_1062161,1062 TCAGAACATACTC-AGCTAGGATC-TTTT-TATAGGTTCTAACCG lbi_U3.2_scaffold_12_174103,1743 TTAGAACATACTC-GAACAGGATC-TGTT-TACAGAAACTGACCG lbi_U3.4_LG_4_3924377,3924603_-_ TTAGAACATACTC-GAACAGGATC-TGTT-TACAGAAACTGACCG lbi_U3.5_LG_4_4002317,4002541_-_ CCAGAACATACTC-GAACAGGATC-TGTT-TACAGAAACTGACCG lbi_U3.1_LG_4_3997044,3997267_-_ TCAGAACATACTC-GAACAGGATC-TGTT-TACAGAAACTGACCG lbi_U3.3_LG_4_3984740,3984964_-_ TCAGAACATACTC-GAACAGGATC-TGTT-TACAGAAACTGACCG lbi_U3.7_LG_4_4150722,4150946___ ACACTCATCACTC-GAACAGGATC-TGTT-TACAGAAGCTGACCC lbi_U3.6_scaffold_20_477047,4772 ACACTCATCACTC-GAACAGGATC-TGTT-TACAGAAACTGACCC sla_U3.3_scaffold_6_338246,33847 TTAGAACATACTC-AGCTAGGATC-TATTTTATAGAAACTAACTC sla_U3.5_scaffold_11_128886,1291 TTAGAACATACTC-AGCTAGGATC-TATTTTATAGAAACTAACTC sla_U3.6_scaffold_11_132805,1330 TTAGAACATACTC-AGCTAGGATC-TATTTTATAGAAACTAACTC sla_U3.1_scaffold_8_2248369,2248 TCAGAACATACTC-AGCTAGGATC-TATTTTATAGAAACTAACTC sla_U3.4_scaffold_6_2716474,2716 TCAGAACATACTC-AGCTAGGATC-TATTTTATAGAAACTAACTC sla_U3.2_scaffold_6_385578,38580 TTAGAACATACTC-AGCTAGGATC-TATTTTATAGAAACTAACTC asb_U3.4_scaffold_14_935019,9352 TTAGAACATACTC-AGCTAGGATC-TATT-TATAGAAACTAACTG asb_U3.2_scaffold_14_655106,6553 TCAGAACATACTC-AGCTAGGATC-TATT-TATAGAAACTAACTG asb_U3.1_scaffold_4_494989,49520 TTAGAACATACTC-AGCTAGGATC-TATT-TATAGAAACTAACTG asb_U3.3_scaffold_4_475125,47534 TCAGAACATACTC-AGCTAGGATC-TATT-TATAGAAACTAACTG pch_U3.4_scaffold_1_979713,97994 TCAGAACATACTC-AGCTAGGATC-TATTTTATAGTTTCTAACTC pch_U3.1_scaffold_16_598839,5990 TCAGAACATACTC-AGCTAGGATC-TATTTTATAGTTTCTAACTC pch_U3.2_scaffold_4_997110,99734 TCAGAACATACTC-AGCTAGGATC-TATTTTATAGTTTCTAACTC pch_U3.3_scaffold_16_602924,6031 TCAGAACATACTC-AGCTAGGATC-TATTTTATAGTTTCTAACTC ppl_U3.1_scaffold_86_109773,1100 TTAGAACATACTC-AGCTAGGATC-TATTTTATAGGTACTAACTC ppl_U3.3_scaffold_159_130347,130 TTAGAACATACTC-AGCTAGGATC-TATTTTATAGGTACTAACTC ppl_U3.2_scaffold_30_415191,4154 TTAGAACATACTC-AGCTAGGATC-TATTTTATAGGTACTAACTC ppl_U3.4_scaffold_27_312738,3129 TCAGAACATACTC-AGCTAGGATC-TATTTTATAGGTACTAACTC ppl_U3.5_scaffold_147_172561,172 TCAGAACATACTC-AGCTAGGATC-TATTTTATAGGTACTAACTC han_U3.1_scaffold_06_619688,6199 TCAGAACATACTC-AGCTAGGATC-TATTCTATAGAAACTAACTC han_U3.2_scaffold_06_1978666,197 TTAGAACATACTC-AGCTAGGATC-TATTCTATAGAAACTAACTC han_U3.3_scaffold_06_1489084,148 CTAGAACATACTC-AGCTAGGATC-TATTCTATAGAAACTAACTC cvi_U3.1_scaffold_7_340585,34086 CATGATCATACTC-TGC-AGGATA-TATT-TGCAGTAGCTAACTG cvi_U3.2_scaffold_3_330560,33083 CATGATCATACTC-TGC-AGGATA-TATT-TGCAGTAGCTAACTG cne_U3.1_adopted_3_1423435,14236 ATCGACCTTACTC-TGC-AGGATC-TCTG-TATAGTAATCGTTCT cne_U3.2_adopted_8_892818,893067 ATCGACCTTACTC-TGC-AGGATC-TCTG-TATAGTAATCGTTCT tme_U3.1_scaffold_3_32286,32531_ ATAGACC-AACTT-TTC-AGGATT-TCTG-TATAGTTATCGTCTC asp_U3.1_scaffold_59_40266,40528 TCAGAACATACTTTTAACGGGATC-TATT-TAAAGTAGATTTCCA asp_U3.2_scaffold_63_101395,1016 CCAGAACATACTTTTA-CGGGATC-TATT-TAAAGTAGATTTCCA rmi_U3.1_scaffold_3_1260839,1261 CAAGACCAAACTC-TTACAGGATC--CTT-TATAGGAAACTTCCG rmi_U3.2_scaffold_4_2443971,2444 CAAGACCAAACTC-TTACAGGATC-CTTT--ATAGGAAACTTCCG rgr_U3.1_scaffold_2_1450682,1450 TAAGACCACACTC-AGTCAGGATC-TCTT-TACAGTTATTCTCCG rgr_U3.2_scaffold_2_1402058,1402 TAAGACCACACTC-AGTCAGGATC-TCTT-TACAGTTATTCTCCG sro_U3.1_scaffold_5_953060,95334 CTAAGACCAACTC-AGTCAGGATC-TAGT-TATAGTTTCTCTCTG sro_U3.2_scaffold_5_52594,52825_ TCAAGACCAACTC-AGTCAGGATC-TAGT-TATAGTTTCTCTCTG sro_U3.3_scaffold_5_41069,41313_ TCAAGACCAACTC-AGTCAGGATC-TAGT-TATAGTTTCTCTCTG ppa_U3.1 CAAGAACAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCT pti_U3.4_GG705418_754741,754990_ CATGACCAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCG psr_U3.4_Supercontig_1.14_436005 CATGACCAAACTC--TTCAGGATC-TATT-TACAGTAGACACCCG psr_U3.5_Supercontig_1.14_359366 ------------------------------------------CCG psr_U3.1_Supercontig_1.78_49588, CATGACCAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCG psr_U3.2_Supercontig_1.56_356415 CATGACCAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCG psr_U3.3_Supercontig_1.1_322826, CATGACCAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCG pgr_U3.3_supercontig_2_94_165205 CATGACCAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCG pgr_U3.1_supercontig_2_8_379313, CATGACCAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCG pgr_U3.2_supercontig_2_8_424713, CATGACCAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCG pti_U3.5_GG705413_312300,312549_ CAAGACCAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCG pti_U3.7_GG709425_665,908_-_73.9 CATGACCAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCA pti_U3.6_GG716129_186,418_-_81.3 CATGACCAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCG pti_U3.1_GG706242_703,946_-_97.8 CATGACCAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCG pti_U3.2_GG706000_7380,7623___97 CATGACCAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCG pti_U3.3_GG705419_1215952,121619 CATGACCAAACTC--TTCAGGATC-TATT-TACAGTAGATACCCG mgl_U3.1_mgl_sf_1_2_45045,45312_ TAAGATCATACTT--TACGGAATCACTTAATAAAGTCGATAACCG sre_U3.1_chromosome_3_222005,222 CAAGATCATACTT--TACGGAATCACTTAATAAAGTCGATTTCCG uma_U3.1_Cont_1.56_33573,33838__ CAAGATCATACTT--TACGGAATCACTTAATAAAGTCGATTTCCG pat_U3.1_scaffold_00022 CAAGATCATACTT--TACGGAATCACTTAATAAAGTCGATATCCG wse_U3.1_scaffold_15_63259,63499 CACGCAGGTACTC--CAAAGGATCATATTCTATAGGACGTATCCA wse_U3.2_scaffold_15_90061,90300 CACGCAGGTACTC--CAAAGGATCATATTCTATAGGACGTATCCA wse_U3.3_scaffold_15_76505,76744 CACGCAGGTACTC--CAAAGGATCATATTCTATAGGACGTATCCA sli_U3.1_scaffold_1_539903,54023 CCGCGCAGTACTT--TGAGGGATCAT-TT-TATAGTGACCTTCCG abi_U3.1_scaffold_17_263518,2637 -------AGTCCT-GCATTTTTA--AAAATGCCATGCT---CTTC pos_U3.1_scaffold_05_1058485,105 ------GAGTCTC-GCATGTTTT--CACATGCCACTTC----TTC pos_U3.2_scaffold_05_631542,6317 ------GAGTCTC-GCATGTTTA--CACATGCCACTTC----TTC cci_U3.2_scaffold_17_64279,64492 -------AGTCTC-GCATTTTTA--CAAATGCCGCATC----TTC cci_U3.1_scaffold_173_28928,2915 -------AGTCTC-GCATTTTTA--CAAATGCCGCATC----TTC sco_U3.1_scaffold_5_503574,50379 -------AGTTTC-GCACATTTA--CATGTGCCGCTTC---TCTC sco_U3.2_scaffold_8_1062161,1062 -------AGTTTC-GCACATTTA--CATGTGCCGCTTC---TCTC lbi_U3.2_scaffold_12_174103,1743 -------AGTCTC-GCATTTTTA--CAAATGCCGCATC----TTC lbi_U3.4_LG_4_3924377,3924603_-_ -------AGTCTC-GCATTTTTA--CAAATGCCGCATC----TTC lbi_U3.5_LG_4_4002317,4002541_-_ -------AGTCTC-GCATTTTTA--CAAATGCCGCATC----TTC lbi_U3.1_LG_4_3997044,3997267_-_ -------AGTCTC-GCATTTTTA--TAAATGCCGCATC----TTC lbi_U3.3_LG_4_3984740,3984964_-_ -------AGTCTC-GCATTTTTA--CAAATGCCGCATC----TTC lbi_U3.7_LG_4_4150722,4150946___ -------AGTCTT-GCATTTTTA--CAAATGCCGCATC----TTC lbi_U3.6_scaffold_20_477047,4772 ------GAGTCTC-GCATTTTTA--CAAATGCCGGATC----TTC sla_U3.3_scaffold_6_338246,33847 ------GAGTCTC-GCATGTTTA--CACATGCCGCATC---CCTC sla_U3.5_scaffold_11_128886,1291 ------GAGTCTC-GCATGTTTA--CACATGCCGCATC---CTTC sla_U3.6_scaffold_11_132805,1330 ------GAGTCTC-GCATGTTTA--CACATGCCGCATC---CTTC sla_U3.1_scaffold_8_2248369,2248 ------GAGTCTC-GCATGTTTA--CACATGCCGCATC---CTTC sla_U3.4_scaffold_6_2716474,2716 ------GAGTCTC-GCATGTTTA--CTCATGCCGCATC---CTTC sla_U3.2_scaffold_6_385578,38580 ------GAGTCTC-GCATGTTTA--CACATGCCGCATC---CTTC asb_U3.4_scaffold_14_935019,9352 ------TAGTCTT-GCGCACTCA--AACGTGCCGCAAT---CTTC asb_U3.2_scaffold_14_655106,6553 ------CAGTCTC-GCGCACTCA--AACGTGCCGCATT---CTTC asb_U3.1_scaffold_4_494989,49520 ------CAGTCTC-GCGCACTCA--AACGTGCCGCATT---CTTC asb_U3.3_scaffold_4_475125,47534 ------CAGTCTC-GCGCACTCA--AACGTGCCGCATT---CTTC pch_U3.4_scaffold_1_979713,97994 ------GAGTCTC-GCATGTTTA--CACATGCCACATC---CTTC pch_U3.1_scaffold_16_598839,5990 ------GAGTCTC-GCATGTTTA--CACATGCCACATC---CTTC pch_U3.2_scaffold_4_997110,99734 ------GAGTCTC-GCATGTTTA--CACATGCCACATC---CTTC pch_U3.3_scaffold_16_602924,6031 ------GAGTCTC-GCATGTTTA--CACATGCCACATC---CTTC ppl_U3.1_scaffold_86_109773,1100 ------GAGTCTC-GCATGTTTA--CACATGCCACATC---CTTC ppl_U3.3_scaffold_159_130347,130 ------GAGTCTC-GCATGTTTA--CACATGCCACATC---CTTC ppl_U3.2_scaffold_30_415191,4154 ------GAGTCTC-GCATGTTTA--CACATGCCACATC---CTTC ppl_U3.4_scaffold_27_312738,3129 ------GAGCCTC-GCATGTTTA--CACATGCCACATC---CTTC ppl_U3.5_scaffold_147_172561,172 ------GAGTCTC-GCATGTTTA--CACATGCCACATC---CTTC han_U3.1_scaffold_06_619688,6199 ------GAGTCTC-GCATGTTTA--CACATGCCACATC---CTTC han_U3.2_scaffold_06_1978666,197 ------GAGTCTC-GCATGTTTA--CACATGCCACATC---CTTC han_U3.3_scaffold_06_1489084,148 ------GAGTCTC-GCATGTTTA--CACATGCCACATC---CTTC cvi_U3.1_scaffold_7_340585,34086 --------ATCTC-GCTTGTTTA--CTCAAGCCACATA--AGCTT cvi_U3.2_scaffold_3_330560,33083 --------ATCTC-GCTTGTTTA--CTCAAGCCACATA--AGCTT cne_U3.1_adopted_3_1423435,14236 ---------TTTTTGCTAGTCCA--CACTAGCCACATT---TTCC cne_U3.2_adopted_8_892818,893067 ---------TTTTTGCTAGTCCA--CACTAGCCACATT---TTCC tme_U3.1_scaffold_3_32286,32531_ --------GTCTTTGCTAGTCCA--CACTAGCGACAAA---TTCC asp_U3.1_scaffold_59_40266,40528 -------TGTTCT-GCTTGCTCA--AGCAAGCCACAAT---CTCC asp_U3.2_scaffold_63_101395,1016 -------TGTTCT-GCTTGCTCA--AGCAAGCCACAAT---CTCC rmi_U3.1_scaffold_3_1260839,1261 --AGATTTGTCTA-GCTAATCTA--CATTAGCCACATCAAACTAC rmi_U3.2_scaffold_4_2443971,2444 --AGATTTGTCTA-GCTAATCTA--CATTAGCCACATCAAACTAC rgr_U3.1_scaffold_2_1450682,1450 ----AGTTGTCTT-GCTCTCTCA--AAAGAGCTACACT---GTTT rgr_U3.2_scaffold_2_1402058,1402 ----AGTTGTCTT-GCTCTCTCA--AAAGAGCTACACT---GTTT sro_U3.1_scaffold_5_953060,95334 -----GTTGTCTTGCTCCTTTCA--AACGAGCTACACT---GTTT sro_U3.2_scaffold_5_52594,52825_ -----GTTGTCTTGCTCCTTTCA--AACGAGCTACACT---GTTT sro_U3.3_scaffold_5_41069,41313_ -----GTTGTCTTGCTCCTTTCA--AACGAGCTACACT---GTTT ppa_U3.1 ATTTGTTAGTCTC-ACTCGCTCA--AAAGAGCCACAGT---GTTA pti_U3.4_GG705418_754741,754990_ A-TCGTTTGTCTC-ACTAGCTCA--ATTGAGCCACAGT---GTTT psr_U3.4_Supercontig_1.14_436005 A-TCGTTTGTCTC-ACTAGCTCA--ATCGAGCCACAGT---GTTT psr_U3.5_Supercontig_1.14_359366 A-TCGTTTGTCTC-ACTAGCTCA--ATCGAGCCACAGT---GTTT psr_U3.1_Supercontig_1.78_49588, A-TCGTTTGTCTC-ACTAGCTCA--ATCGAGCCACAGT---GTTT psr_U3.2_Supercontig_1.56_356415 A-TCGTTTGTCTC-ACTAGCTCA--ATTGAGCCACAGT---GTTT psr_U3.3_Supercontig_1.1_322826, A-TCGTTTGTCTC-ACTAGCTCA--ATTGAGCCACAGT---GTTT pgr_U3.3_supercontig_2_94_165205 A-TCGTTTGTCTC-ACTAGCTCA--ACCGAGCCACAGT---GTTT pgr_U3.1_supercontig_2_8_379313, A-TCGTTTGTCTC-ACTAGCTCA--ACCGAGCCACAGT---GTTT pgr_U3.2_supercontig_2_8_424713, A-TCGTTTGTCTC-ACTAGCTCA--ACCGAGCCACAGT---GTTT pti_U3.5_GG705413_312300,312549_ A-TCGTTTGTCTC-ACTAGCTCA--ATTGAGCCACAGT---GTTT pti_U3.7_GG709425_665,908_-_73.9 A-TTGTTTGTCTC-ACTAGCTCA--ATTGAGCCACAGT---GTTT pti_U3.6_GG716129_186,418_-_81.3 A-TTGTTTGTCTC-ACTAGCTCA--ATTGAGCCACAGT---GTTT pti_U3.1_GG706242_703,946_-_97.8 A-TCGTTTGTCTC-ACTAGCTCA--ATCGAGCCACAGT---GTTT pti_U3.2_GG706000_7380,7623___97 A-TCGTTTGTCTC-ACTAGCTCA--ATCGAGCCACAGT---GTTT pti_U3.3_GG705419_1215952,121619 A-TCGTTTGTCTC-ACTAGCTCA--ATCGAGCCACAGT---GTTT mgl_U3.1_mgl_sf_1_2_45045,45312_ --------GATCTTTCGTGCTCAAACGCATGTCACAT----ATTT sre_U3.1_chromosome_3_222005,222 ---------ATTCTACATGCTCAATTGCATGTCACCTT---ATTC uma_U3.1_Cont_1.56_33573,33838__ ---------ATTCTACATGCTCAATTGCATGTCACCTT---ATTC pat_U3.1_scaffold_00022 ---------ATTCTACATGCTCAATTGCATGTCACCTT---ATTC wse_U3.1_scaffold_15_63259,63499 --------GTCTCTGCAGATTTA--ATTCTGCCACTTT---ATCA wse_U3.2_scaffold_15_90061,90300 --------GTCTCTGCAGATTTA--ATTCTGCCACTTT---ATCA wse_U3.3_scaffold_15_76505,76744 --------GTCTCTGCAGATTTA--ATTCTGCCACTTT---ATCA sli_U3.1_scaffold_1_539903,54023 ------ACGTCTTTGCACTCT----AACGAGTCGCATC---CTTA abi_U3.1_scaffold_17_263518,2637 ATATCCAACCGATGACTTC---CG----------------CGCT- pos_U3.1_scaffold_05_1058485,105 AAGTCCACTCGATGA-------------------------CCTTC pos_U3.2_scaffold_05_631542,6317 AAGTCCACTCGATGATATG-------------------------C cci_U3.2_scaffold_17_64279,64492 ATATCCACTCGATGACATA-------------------------C cci_U3.1_scaffold_173_28928,2915 ATATCCACTCGATGA-------------------------CATTA sco_U3.1_scaffold_5_503574,50379 AAATCCAGGCGATGACACC-------------------------- sco_U3.2_scaffold_8_1062161,1062 AAATCCAGGCGATGACGCT-------------------------- lbi_U3.2_scaffold_12_174103,1743 AAATCCACTCGATGA-------------------------CCTCC lbi_U3.4_LG_4_3924377,3924603_-_ ATATCCACTCGATGAC------------------------TTTAC lbi_U3.5_LG_4_4002317,4002541_-_ ATATCCACTCGATGA-------------------------CTTCC lbi_U3.1_LG_4_3997044,3997267_-_ ATATCCACTCGATGA-------------------------CTTCC lbi_U3.3_LG_4_3984740,3984964_-_ ATATCCACTCGATGA-------------------------CTTCC lbi_U3.7_LG_4_4150722,4150946___ ATATCCACTGGATGACTTG-------------------------T lbi_U3.6_scaffold_20_477047,4772 ATATCCACTGGATGA-------------------------CTTCA sla_U3.3_scaffold_6_338246,33847 AAATCCAGTCGATGATACG-------------------------A sla_U3.5_scaffold_11_128886,1291 AAATCCAGTGGATGATAGA-------------------------A sla_U3.6_scaffold_11_132805,1330 AAATCCAGTGGATGATAGA-------------------------A sla_U3.1_scaffold_8_2248369,2248 AGATCCAGTCGATGATATA-------------------------A sla_U3.4_scaffold_6_2716474,2716 AAATCCAGTCGATGATATA-------------------------A sla_U3.2_scaffold_6_385578,38580 AAATCCAGTCGATGATACG-------------------------A asb_U3.4_scaffold_14_935019,9352 ACATCCACTCGATGACAT----------------------CTCCC asb_U3.2_scaffold_14_655106,6553 ACATCCACTCGATGACAT----------------------CGCCC asb_U3.1_scaffold_4_494989,49520 ACATCCACTCGATGACAT----------------------CGCCC asb_U3.3_scaffold_4_475125,47534 ACATCCACTCGATGACAT----------------------CGCCC pch_U3.4_scaffold_1_979713,97994 AAGTCCAGTCGATGA-------------------------CAATC pch_U3.1_scaffold_16_598839,5990 AAATCCAGTCGATGA-------------------------CAATC pch_U3.2_scaffold_4_997110,99734 AAATCCAGTCGATGA-------------------------CAATC pch_U3.3_scaffold_16_602924,6031 AAATCCAGTCGATGA-------------------------CAATC ppl_U3.1_scaffold_86_109773,1100 AAATCCAGTCGATGA-------------------------CATTC ppl_U3.3_scaffold_159_130347,130 AAATCCAGTCGATGA-------------------------CATCC ppl_U3.2_scaffold_30_415191,4154 ATATCCAGTCGATGA-------------------------CGTCC ppl_U3.4_scaffold_27_312738,3129 AAATCCAGTCGATGA-------------------------CACCC ppl_U3.5_scaffold_147_172561,172 AAATCCAGTCGATGA-------------------------CACCC han_U3.1_scaffold_06_619688,6199 AAATCCAGTAGATGA-------------------------CTATC han_U3.2_scaffold_06_1978666,197 AAATCCAGTCGATGATCAT-------------------------C han_U3.3_scaffold_06_1489084,148 AAATCCAGTCGATGA-------------------------CATCC cvi_U3.1_scaffold_7_340585,34086 TAACCCAGCTGATGACCAA---AA----------------CATTC cvi_U3.2_scaffold_3_330560,33083 TAACCCAGCTGATGACCAAAA-------------------CCTTC cne_U3.1_adopted_3_1423435,14236 ACGTCGAGGGGATGATCTA-----G--------------TCACCC cne_U3.2_adopted_8_892818,893067 ACGTCGAGGGGATGATCTA-----G--------------TTACCC tme_U3.1_scaffold_3_32286,32531_ ACGTCGAGGTGATGATCAC---------------------CCCCC asp_U3.1_scaffold_59_40266,40528 ACCCTC-GATGATGATGGA-------------------------G asp_U3.2_scaffold_63_101395,1016 ACCCTC-GAAGATGAGGTA--G----------------------- rmi_U3.1_scaffold_3_1260839,1261 GACTCTTGATGAGGACAAA----------------------GGCC rmi_U3.2_scaffold_4_2443971,2444 GGCTCTTGATGAGGGCAAA----G----------------GTCGT rgr_U3.1_scaffold_2_1450682,1450 GCAGGT-CGCGATGAGCGACAGGT--------------------- rgr_U3.2_scaffold_2_1402058,1402 GCAGGT-CGCGATGAGCGACAGGT----------------CGC-- sro_U3.1_scaffold_5_953060,95334 ACGGGC-CACGATGAAGTA-----------------------CGA sro_U3.2_scaffold_5_52594,52825_ ACGGGC-CACGATGAACAA---------------------CGAGG sro_U3.3_scaffold_5_41069,41313_ ACGGGC-CACGATGAACAACGAGG--------------------C ppa_U3.1 CCGAGT-GTTGATGAGTTN-------------------------T pti_U3.4_GG705418_754741,754990_ ACGAGT-GTTGATGATTCA--A----------------------- psr_U3.4_Supercontig_1.14_436005 ATAAGT-GTTGATGATGTGAA------------------------ psr_U3.5_Supercontig_1.14_359366 ATAAGT-GTTGATGATGTGAA------------------------ psr_U3.1_Supercontig_1.78_49588, ATAAGT-GTTGATGATTTG-------------------------- psr_U3.2_Supercontig_1.56_356415 ATAAGT-GTTGATGATTTA-------------------------- psr_U3.3_Supercontig_1.1_322826, ATAAGT-GTTGATGATTCG-------------------------- pgr_U3.3_supercontig_2_94_165205 ATAAGT-GATGATGATCCG-------------------------- pgr_U3.1_supercontig_2_8_379313, ATAAGT-GACGATGATTCG-------------------------- pgr_U3.2_supercontig_2_8_424713, ATAAGT-GACGATGATTCG-------------------------- pti_U3.5_GG705413_312300,312549_ CTAAGT-GACGATGATTCG-------------------------- pti_U3.7_GG709425_665,908_-_73.9 CTAAGT-GACGATGATTCG-------------------------- pti_U3.6_GG716129_186,418_-_81.3 CTAAGT-GACGATGATTCG-------------------------- pti_U3.1_GG706242_703,946_-_97.8 ATAAGT-GACGATGATTCG-------------------------- pti_U3.2_GG706000_7380,7623___97 ATAAGT-GACGATGATTCG-------------------------- pti_U3.3_GG705419_1215952,121619 ATAAGT-GACGATGATTCG-------------------------- mgl_U3.1_mgl_sf_1_2_45045,45312_ CAGTCTAGTCGATGAAACC--CGGACGTTTTGGCCACACGTGGTC sre_U3.1_chromosome_3_222005,222 A-GTCTAGTAGATGAAACCCGAG-----------------CGTTT uma_U3.1_Cont_1.56_33573,33838__ A-GTCTAGTAGATGAAAAC--CGAG---------------CGTTT pat_U3.1_scaffold_00022 A-ATCTAGTAGATGAAACC--CGAG---------------CGCT- wse_U3.1_scaffold_15_63259,63499 TTGGCTCGAAGATGACTGA-----------------------CAG wse_U3.2_scaffold_15_90061,90300 TTGGCTCGAAGATGACTGA--CAG----------------CCTC- wse_U3.3_scaffold_15_76505,76744 TTGGCTCGAAGATGACTGA--CAG----------------CCTC- sli_U3.1_scaffold_1_539903,54023 ACGCCC-GTTGATGACACG-------------------------- abi_U3.1_scaffold_17_263518,2637 ----CTCTCGTCAT----AACCGAGAACA---------------- pos_U3.1_scaffold_05_1058485,105 GCGCTCGCCCGTAT----GACTGAGAACA---------------- pos_U3.2_scaffold_05_631542,6317 GCGCTCGTCCGTAT----GACTGAGAACA---------------- cci_U3.2_scaffold_17_64279,64492 GCGCTCTCTCGTTA----TACTGAGAACA---------------- cci_U3.1_scaffold_173_28928,2915 GCGCTCACTCGTTA----TACCGAGAACA---------------- sco_U3.1_scaffold_5_503574,50379 GCGCTCGCTCGTTC----GACGGAGAACA---------------- sco_U3.2_scaffold_8_1062161,1062 GCACCCGCTCGTTC----GACGGAGAACA---------------- lbi_U3.2_scaffold_12_174103,1743 GCGCTGCCTCGTTA----TACCGAGAACA---------------- lbi_U3.4_LG_4_3924377,3924603_-_ GCGCTCACTCGTTA----TACTGAGAACA---------------- lbi_U3.5_LG_4_4002317,4002541_-_ GCGCTCACCCGTTA----TACCGAGAATA---------------- lbi_U3.1_LG_4_3997044,3997267_-_ GCGCTCACTCGTTA----TACCGAGAACA---------------- lbi_U3.3_LG_4_3984740,3984964_-_ GCGCTCACTCGTTA----TACCGAGAATA---------------- lbi_U3.7_LG_4_4150722,4150946___ TTGCTCACTTGTTA----TACCGAGAACA---------------- lbi_U3.6_scaffold_20_477047,4772 ATGCTCACTTGTTA----TAACGAGAACA---------------- sla_U3.3_scaffold_6_338246,33847 GCGCTCTCCCGTTC----AACAGAGAACA---------------- sla_U3.5_scaffold_11_128886,1291 GCGCTGCCTCGTTC----GACAGAGAACA---------------- sla_U3.6_scaffold_11_132805,1330 GCGCTGCCTCGTTC----GACAGAGAACA---------------- sla_U3.1_scaffold_8_2248369,2248 GCGCTGCCTCGTTC----AACAGAGAACA---------------- sla_U3.4_scaffold_6_2716474,2716 GCGCTACCTCGTTC----AACAGAGAACA---------------- sla_U3.2_scaffold_6_385578,38580 GCGCTCTCCCGTTC----AACAGAGAACA---------------- asb_U3.4_scaffold_14_935019,9352 GCACCCTGCTTT------AGCAGAGAACA---------------- asb_U3.2_scaffold_14_655106,6553 GCACCCTGCTTT------AGCAGAGAACA---------------- asb_U3.1_scaffold_4_494989,49520 GCACCCTGCTTT------AGCAGAGAACA---------------- asb_U3.3_scaffold_4_475125,47534 GCACCCTGCTTT------AGCAGAGAACA---------------- pch_U3.4_scaffold_1_979713,97994 GCGTCCGCCCGTCA----TACCGAGCACA---------------- pch_U3.1_scaffold_16_598839,5990 GCGTTCGCCCGTCA----TACCGAGCACA---------------- pch_U3.2_scaffold_4_997110,99734 GCGTTCGCCCGTCA----TACCGAGCACA---------------- pch_U3.3_scaffold_16_602924,6031 GCGTTCGCCCGTCA----TACCGAGCACA---------------- ppl_U3.1_scaffold_86_109773,1100 GCGTCCACTCGTCA----TACCGAGAACA---------------- ppl_U3.3_scaffold_159_130347,130 GCGTCCACTCGTCA----TACCGAGAACA---------------- ppl_U3.2_scaffold_30_415191,4154 GCGCCCGCTCGTTA----TACCGAGAACA---------------- ppl_U3.4_scaffold_27_312738,3129 GCGCCCGCTCGTTA----TACTGAGCACC---------------- ppl_U3.5_scaffold_147_172561,172 GCGCCCGCTCGTTA----TACTGAGCACA---------------- han_U3.1_scaffold_06_619688,6199 GCGCGCACTCGTTT----TACCGAGAAC----------------- han_U3.2_scaffold_06_1978666,197 GCGCTCACTCGTTT----TACTGAGAACA---------------- han_U3.3_scaffold_06_1489084,148 ATGTCCCCTCGTTC----AACTGAGAACA---------------- cvi_U3.1_scaffold_7_340585,34086 GTAGCGCCCTGTTT----A---GGAAACTAAACT----------- cvi_U3.2_scaffold_3_330560,33083 GTAGCGCCCTGTTT----A---GGAAACTAAACTACACGGAGTCT cne_U3.1_adopted_3_1423435,14236 GCTTCGCTCTTTCA----CAGAGGCATT----------------- cne_U3.2_adopted_8_892818,893067 GCTCCGCTCTCTCA----CAGAGGCATT----------------- tme_U3.1_scaffold_3_32286,32531_ GCTCCGCTCTCTCA----CAGAGGCC------------------- asp_U3.1_scaffold_59_40266,40528 AAACTCGTATCCCTTTTAAAGTGAGGTC----------------- asp_U3.2_scaffold_63_101395,1016 AAGCTCGCATCCCTTTTAGAGTGAGGTC----------------- rmi_U3.1_scaffold_3_1260839,1261 GTATTATTCCTCAC----CAACGAGAAC----------------- rmi_U3.2_scaffold_4_2443971,2444 ATAATATTCCTCAC----CAACGAGAAC----------------- rgr_U3.1_scaffold_2_1450682,1450 -CGCATCCCCATCT----GAGCGAGAAC----------------- rgr_U3.2_scaffold_2_1402058,1402 ----ATCCCCATCT----GAGCGAGAACCA--------------- sro_U3.1_scaffold_5_953060,95334 GGCGGATCCCACGTAACCAAGCGAGAAC----------------- sro_U3.2_scaffold_5_52594,52825_ CGGATCCCCAGTAAAACCAAGCGAGAAC----------------- sro_U3.3_scaffold_5_41069,41313_ GGATCCCCAGTAAAAACCAAGCGAGAAC----------------- ppa_U3.1 AGGCTGCGCATCCCTTCTAAGCGAGAAC----------------- pti_U3.4_GG705418_754741,754990_ AAGCCTCCCGTTTCACCTTAGCGAGAACCGCCAGC---------- psr_U3.4_Supercontig_1.14_436005 AAGCTTTCTATTTCGTTTGAGCGAGAAC----------------- psr_U3.5_Supercontig_1.14_359366 AAGCTTTCTATTTCGTTTGAGCGAGAAC----------------- psr_U3.1_Supercontig_1.78_49588, AAGTTTCTCTATTTCATTGAGCGAGAAC----------------- psr_U3.2_Supercontig_1.56_356415 AAGTTCTTCTATTTCATTGAGCGAGAAC----------------- psr_U3.3_Supercontig_1.1_322826, AAGTTCTTCTATTTCCTTGAGCGAGAAC----------------- pgr_U3.3_supercontig_2_94_165205 AAGTCTTCTATTTCA-TTGAGCGAGAAC----------------- pgr_U3.1_supercontig_2_8_379313, AAGTTGTCTATTTCGTTTGAGCGAGAAC----------------- pgr_U3.2_supercontig_2_8_424713, AAGTTGTCTATTTCGTTTGAGCGAGAAC----------------- pti_U3.5_GG705413_312300,312549_ AAGTT-GTCTGTTTCATTGAGCGAGAAC----------------- pti_U3.7_GG709425_665,908_-_73.9 AAGT-CTTCTGTTTCCTTGAGCAAGAAC----------------- pti_U3.6_GG716129_186,418_-_81.3 AAGT-CTTCTGTTTCCTTGAGCAAGAAC----------------- pti_U3.1_GG706242_703,946_-_97.8 AAGT-CTTCTATTTCCTTGAGCGAGAAC----------------- pti_U3.2_GG706000_7380,7623___97 AAGT-CTTCTATTTCCTTGAGCGAGAAC----------------- pti_U3.3_GG705419_1215952,121619 AAGT-CTTCTGTTTCCTTGAGCGAGAAC----------------- mgl_U3.1_mgl_sf_1_2_45045,45312_ TGCCAACTCCCTT-TAGCCAGTGACGGA----------------- sre_U3.1_chromosome_3_222005,222 GCCGCCCTTCACG----ACAGTGAGG------------------- uma_U3.1_Cont_1.56_33573,33838__ GCCGCCCTTTACG----ACAGTGAGG------------------- pat_U3.1_scaffold_00022 GCCGCCCTTCACG----ACAGTGAGG------------------- wse_U3.1_scaffold_15_63259,63499 CCTCCTTCCCTTC----CCACCGAGAAC----------------- wse_U3.2_scaffold_15_90061,90300 ----CTTCCCTTA----CCACCGAGAAC----------------- wse_U3.3_scaffold_15_76505,76744 ----CTTCCCTTA----CCACCGAGAAC----------------- sli_U3.1_scaffold_1_539903,54023 ACGGCGCCGTCCCA---CACTCGAGAAC----------------- abi_U3.1_scaffold_17_263518,2637 --T----------GGCACTGGTTTTCT------------------ pos_U3.1_scaffold_05_1058485,105 --T----------GGCTTCTTCCTTGT------------------ pos_U3.2_scaffold_05_631542,6317 --T----------GGCTCTCTTC---------------------- cci_U3.2_scaffold_17_64279,64492 --T----------GGCTCTATC----------------------- cci_U3.1_scaffold_173_28928,2915 --T----------GGCTCTTTGTT--------------------- sco_U3.1_scaffold_5_503574,50379 --T----------GGCCGCGC------------------------ sco_U3.2_scaffold_8_1062161,1062 --T----------GGCAGCGC------------------------ lbi_U3.2_scaffold_12_174103,1743 --T----------GGCTTT-------------------------- lbi_U3.4_LG_4_3924377,3924603_-_ --T----------GGCTTT-------------------------- lbi_U3.5_LG_4_4002317,4002541_-_ --T----------GGCTTT-------------------------- lbi_U3.1_LG_4_3997044,3997267_-_ --T----------GGCTT--------------------------- lbi_U3.3_LG_4_3984740,3984964_-_ --T----------GGCTTT-------------------------- lbi_U3.7_LG_4_4150722,4150946___ --T----------GGTTTT-------------------------- lbi_U3.6_scaffold_20_477047,4772 --T----------GGCTTT-------------------------- sla_U3.3_scaffold_6_338246,33847 --T----------GACCTTTTTTTTT------------------- sla_U3.5_scaffold_11_128886,1291 --T----------GGCTCTTTCCTTGT------------------ sla_U3.6_scaffold_11_132805,1330 --T----------GGCTCTCTCCTTGT------------------ sla_U3.1_scaffold_8_2248369,2248 --T----------GGCCCTTTCTTAT------------------- sla_U3.4_scaffold_6_2716474,2716 --T----------GGCCTTTTCTTTGC------------------ sla_U3.2_scaffold_6_385578,38580 --T----------GGCATTCTTTTTT------------------- asb_U3.4_scaffold_14_935019,9352 --T------------------------------------------ asb_U3.2_scaffold_14_655106,6553 --T------------------------------------------ asb_U3.1_scaffold_4_494989,49520 --T------------------------------------------ asb_U3.3_scaffold_4_475125,47534 --T------------------------------------------ pch_U3.4_scaffold_1_979713,97994 --T----------GGCCCCGCCCT--------------------- pch_U3.1_scaffold_16_598839,5990 --T----------GGCCGCCGCCC--------------------- pch_U3.2_scaffold_4_997110,99734 --T----------GGCCGCCGCCC--------------------- pch_U3.3_scaffold_16_602924,6031 --T----------GGCCGCCGCCC--------------------- ppl_U3.1_scaffold_86_109773,1100 --T----------GCGCATTATTT--------------------- ppl_U3.3_scaffold_159_130347,130 --T----------GTGCATTATTT--------------------- ppl_U3.2_scaffold_30_415191,4154 --C----------GTCTGCCTTC---------------------- ppl_U3.4_scaffold_27_312738,3129 --T----------GCTTCTCTCT---------------------- ppl_U3.5_scaffold_147_172561,172 --T----------GCTTCCCTTT---------------------- han_U3.1_scaffold_06_619688,6199 --T----------ATGCGCCTCTTTC------------------- han_U3.2_scaffold_06_1978666,197 --T----------GGCCCTCTTC---------------------- han_U3.3_scaffold_06_1489084,148 --T----------AGCCGCCTCTT--------------------- cvi_U3.1_scaffold_7_340585,34086 --TCACGGAGTCTGCTTGTTCGCTCCTCTTGGCCTTCGGGCCA-- cvi_U3.2_scaffold_3_330560,33083 ACTTGTTCGACTTGGCTGCCTTCGGGTGGC--------------- cne_U3.1_adopted_3_1423435,14236 --T----------AGCCG---TCGGTCCTCTCTTTCGAGAGAG-- cne_U3.2_adopted_8_892818,893067 --T----------AGCCA---TCGGTCCTCTCTTTCGAGTGAG-- tme_U3.1_scaffold_3_32286,32531_ --TTTGGACCCGTGTTTTGTCATTTCTTTTGAGGTGAA------- asp_U3.1_scaffold_59_40266,40528 --TTTC-------GTCTCTGTCTTTCTTCGG-------------- asp_U3.2_scaffold_63_101395,1016 --TTTC-------GTCTTCCCTTCCTTTG---------------- rmi_U3.1_scaffold_3_1260839,1261 --T------------TTTTCTCGCTGCCTCGCTTTACATGACCAC rmi_U3.2_scaffold_4_2443971,2444 --T----------TTTTCTCGCTGCCTCGCTTCCAATGACCGCGT rgr_U3.1_scaffold_2_1450682,1450 --TACGGGCGTGCGCTTCCCGCGCTTCCCTAGAGGGAGCCGG--- rgr_U3.2_scaffold_2_1402058,1402 --C----------GGGCGTGCGCTTCCCGCGCTTCCCTAGAGGGA sro_U3.1_scaffold_5_953060,95334 --TCGA-------AACTCCTC------------------------ sro_U3.2_scaffold_5_52594,52825_ --TCGGGGGA---ATCTCTTCCCTCG------------------- sro_U3.3_scaffold_5_41069,41313_ --TCGGGGGC----------------------------------- ppa_U3.1 --TTCCCTGCCCCAGCTA--------------------------- pti_U3.4_GG705418_754741,754990_ --T----------GGGCTCGCCCCACTT----------------- psr_U3.4_Supercontig_1.14_436005 --T----------GTCTGTTTCGTGC------------------- psr_U3.5_Supercontig_1.14_359366 --T----------GTCTGGTTCTTCC------------------- psr_U3.1_Supercontig_1.78_49588, --C----------GTCTCTTATCTTT------------------- psr_U3.2_Supercontig_1.56_356415 --T----------GTCTGTTTCGTC-------------------- psr_U3.3_Supercontig_1.1_322826, --T----------GTCTGCTTCGT--------------------- pgr_U3.3_supercontig_2_94_165205 --C----------GTCTGTCTTTCGATGGCTTGC----------- pgr_U3.1_supercontig_2_8_379313, --T----------GTCTG---CTCGACCCTTAG------------ pgr_U3.2_supercontig_2_8_424713, --T----------GTCTG---CTCGACCCTTAG------------ pti_U3.5_GG705413_312300,312549_ --C----------GTCTGTCGAT---------------------- pti_U3.7_GG709425_665,908_-_73.9 --T----------TTCTGTCA------------------------ pti_U3.6_GG716129_186,418_-_81.3 --T----------GTCTGTCG------------------------ pti_U3.1_GG706242_703,946_-_97.8 --T----------GTCTGTCG------------------------ pti_U3.2_GG706000_7380,7623___97 --T----------GTCTGTCG------------------------ pti_U3.3_GG705419_1215952,121619 --T----------GTCTGTCG------------------------ mgl_U3.1_mgl_sf_1_2_45045,45312_ --T----------GTTGGGCCTCTGTCGCCCGTCGATGATCTGAT sre_U3.1_chromosome_3_222005,222 --CTACATCAAGGGCCTTGTCGTCCTTC----------------- uma_U3.1_Cont_1.56_33573,33838__ --CTATATCAAGGGCCTTGTCATCGCTC----------------- pat_U3.1_scaffold_00022 --CTAT-CCAAGGGCCTTGTCGATGATG----------------- wse_U3.1_scaffold_15_63259,63499 --TATGAGGGGGTAGT----------------------------- wse_U3.2_scaffold_15_90061,90300 --TATGAGGGGGTAGT----------------------------- wse_U3.3_scaffold_15_76505,76744 --TATGAGGGGGTAGT----------------------------- sli_U3.1_scaffold_1_539903,54023 --TCGCG------GTCCTGCCGCC--------------------- abi_U3.1_scaffold_17_263518,2637 ------------------------------------AACCGGTGT pos_U3.1_scaffold_05_1058485,105 -------------------------------------GGAGAGGC pos_U3.2_scaffold_05_631542,6317 --------------------------------------GGGGAGT cci_U3.2_scaffold_17_64279,64492 -----------------------------------------GAGT cci_U3.1_scaffold_173_28928,2915 -----------------------------------------GAGT sco_U3.1_scaffold_5_503574,50379 --------------------------------------AAGCGGT sco_U3.2_scaffold_8_1062161,1062 --------------------------------------AAGCTGT lbi_U3.2_scaffold_12_174103,1743 --------------------------------GCGCAAGCAAAGT lbi_U3.4_LG_4_3924377,3924603_-_ --------------------------------GCGCAAGCGGGGC lbi_U3.5_LG_4_4002317,4002541_-_ --------------------------------GCGCAAGCAGGGC lbi_U3.1_LG_4_3997044,3997267_-_ --------------------------------TGCGCAAGCAGGC lbi_U3.3_LG_4_3984740,3984964_-_ --------------------------------GCGCAAGCAGGGC lbi_U3.7_LG_4_4150722,4150946___ --------------------------------GCGCAAGCAGGGC lbi_U3.6_scaffold_20_477047,4772 --------------------------------GCGCAAGCAGGGC sla_U3.3_scaffold_6_338246,33847 --------------------------------------AGAGGGT sla_U3.5_scaffold_11_128886,1291 -------------------------------------GAGAGAGT sla_U3.6_scaffold_11_132805,1330 -------------------------------------GAGAGAGT sla_U3.1_scaffold_8_2248369,2248 -------------------------------------GAAGGGGT sla_U3.4_scaffold_6_2716474,2716 --------------------------------------AAAGGGT sla_U3.2_scaffold_6_385578,38580 --------------------------------------AGAGTGC asb_U3.4_scaffold_14_935019,9352 --------------------------------GCGCCTCACAGCG asb_U3.2_scaffold_14_655106,6553 --------------------------------GCGCCTCACAGCG asb_U3.1_scaffold_4_494989,49520 --------------------------------GCGCTTCACGGCG asb_U3.3_scaffold_4_475125,47534 --------------------------------GCGCCTCACGGCG pch_U3.4_scaffold_1_979713,97994 --------------------------------TCGGGCGCGGGGT pch_U3.1_scaffold_16_598839,5990 --------------------------------TCGGGCGTGCGGT pch_U3.2_scaffold_4_997110,99734 --------------------------------TCGGGTGTGCGGT pch_U3.3_scaffold_16_602924,6031 --------------------------------TCGGGCGTGCGGT ppl_U3.1_scaffold_86_109773,1100 ---------------------------------------GATGCG ppl_U3.3_scaffold_159_130347,130 ---------------------------------------GATGCG ppl_U3.2_scaffold_30_415191,4154 --------------------------------------GGGCGGA ppl_U3.4_scaffold_27_312738,3129 ---------------------------------------GGGGAG ppl_U3.5_scaffold_147_172561,172 ---------------------------------------GGGGAG han_U3.1_scaffold_06_619688,6199 -------------------------------------GGGTGGCG han_U3.2_scaffold_06_1978666,197 --------------------------------------GGAGGGT han_U3.3_scaffold_06_1489084,148 --------------------------------------GGGCGGT cvi_U3.1_scaffold_7_340585,34086 --------------------------------TCAGGTTTGAACA cvi_U3.2_scaffold_3_330560,33083 --------------------------------TCAAGCTGGAACA cne_U3.1_adopted_3_1423435,14236 --------------------------------GTTCCGGGAGGTT cne_U3.2_adopted_8_892818,893067 --------------------------------GTTCCGAGAGGTT tme_U3.1_scaffold_3_32286,32531_ --------------------------------GAAATACGGGTCT asp_U3.1_scaffold_59_40266,40528 --------------------------------GAAGGCAGAAACG asp_U3.2_scaffold_63_101395,1016 --------------------------------GAGGTGGAAGACG rmi_U3.1_scaffold_3_1260839,1261 GTCTACGTGGTCAAGCATCTCTTTATGAGATGCGGCAGGCTAGCG rmi_U3.2_scaffold_4_2443971,2444 TAACGGTGGTCAAAGCATCTCTTCATGAGACGCGGCAGGCTAGCG rgr_U3.1_scaffold_2_1450682,1450 --------------------------------GTCGCGTGCGCTC rgr_U3.2_scaffold_2_1402058,1402 GCCGG---------------------------GTCGAGTGCGCTC sro_U3.1_scaffold_5_953060,95334 --------------------------------GTCCAGAGGGGTT sro_U3.2_scaffold_5_52594,52825_ --------------------------------------------- sro_U3.3_scaffold_5_41069,41313_ --------------------------------GCAGAGGAGAACT ppa_U3.1 --------------------------------GTNTGAGGCAGGG pti_U3.4_GG705418_754741,754990_ --------------------------------------------G psr_U3.4_Supercontig_1.14_436005 ------------------------------------------AGA psr_U3.5_Supercontig_1.14_359366 ------------------------------------------AGA psr_U3.1_Supercontig_1.78_49588, --------------------------------TCCTGATAAGAGA psr_U3.2_Supercontig_1.56_356415 --------------------------------TTTTGACGACAGA psr_U3.3_Supercontig_1.1_322826, --------------------------------CTTTGACGACAGA pgr_U3.3_supercontig_2_94_165205 --------------------------------CCTCGTTGAC-GA pgr_U3.1_supercontig_2_8_379313, ----------------------------------TGGTCGACAGA pgr_U3.2_supercontig_2_8_424713, ----------------------------------TGGTCGACAGA pti_U3.5_GG705413_312300,312549_ --------------------------------CTCGGTCGACAGA pti_U3.7_GG709425_665,908_-_73.9 --------------------------------AGCAATCAGCAGA pti_U3.6_GG716129_186,418_-_81.3 --------------------------------AGCAATTGGCAGA pti_U3.1_GG706242_703,946_-_97.8 --------------------------------AGCAATCGGCAGA pti_U3.2_GG706000_7380,7623___97 --------------------------------AGCAATCGGCAGA pti_U3.3_GG705419_1215952,121619 --------------------------------AGCAATCGGCAGA mgl_U3.1_mgl_sf_1_2_45045,45312_ --------------------------------GCCCTTCGATTGC sre_U3.1_chromosome_3_222005,222 --------------------------------TCACCTCGTGTGA uma_U3.1_Cont_1.56_33573,33838__ --------------------------------TCACCTAGTGTGA pat_U3.1_scaffold_00022 --------------------------------TGCCTCGTGCACA wse_U3.1_scaffold_15_63259,63499 --------------------------------TTACTACCAGCCT wse_U3.2_scaffold_15_90061,90300 --------------------------------TTACTACCAGCCT wse_U3.3_scaffold_15_76505,76744 --------------------------------TTACTACCAGCCT sli_U3.1_scaffold_1_539903,54023 --------------------------------------------- abi_U3.1_scaffold_17_263518,2637 C----------TCGAGGAC-------GTTTTGGCTT--------- pos_U3.1_scaffold_05_1058485,105 C----------TCGAGGAC-------G-TTTGGTGG--------- pos_U3.2_scaffold_05_631542,6317 C----------TCGAGGAC-------G-TTTGGCTT--------- cci_U3.2_scaffold_17_64279,64492 C----------TCGAGGAC-------G-TTTGGTTG--------- cci_U3.1_scaffold_173_28928,2915 C----------TCGAGGAC-------G-TTTGGCGG--------- sco_U3.1_scaffold_5_503574,50379 C----------TCGAGGAT-------G-TTTGGCCA--------- sco_U3.2_scaffold_8_1062161,1062 C----------TCGAGGAT-------G-TTTGGCCA--------- lbi_U3.2_scaffold_12_174103,1743 C----------TCGAGGAC-------G-TTTGGTTC--------- lbi_U3.4_LG_4_3924377,3924603_-_ T----------TCGAGGAC-------G-TTTGGTGG--------- lbi_U3.5_LG_4_4002317,4002541_-_ C----------TCGAGGAC-------G-TTTGGTGA--------- lbi_U3.1_LG_4_3997044,3997267_-_ C----------TCGAGGAC-------G-TTTGGTGA--------- lbi_U3.3_LG_4_3984740,3984964_-_ C----------TCGAGGAC-------G-TTTGGTGA--------- lbi_U3.7_LG_4_4150722,4150946___ C----------TTGAGGAT-------G-TTTGGTGA--------- lbi_U3.6_scaffold_20_477047,4772 C----------TCGAGGAC-------G-TTTGGTGA--------- sla_U3.3_scaffold_6_338246,33847 C----------TCGATGAA-------G-TTTGGTTT--------- sla_U3.5_scaffold_11_128886,1291 T----------TCGAGGAT-------G-TTTGGTTT--------- sla_U3.6_scaffold_11_132805,1330 T----------TCGAGGAT-------G-TTTGGTTT--------- sla_U3.1_scaffold_8_2248369,2248 C----------TCGAGGAC-------G-TTTGGTTT--------- sla_U3.4_scaffold_6_2716474,2716 C----------TCGAGGAC-------G-TTTGGTTT--------- sla_U3.2_scaffold_6_385578,38580 C----------TCGATGAA-------G-TTTGGTTT--------- asb_U3.4_scaffold_14_935019,9352 C----------TCGATGAA-------G-CTGGCCCG--------- asb_U3.2_scaffold_14_655106,6553 C----------TCGATGAA-------G-CTGGCCCG--------- asb_U3.1_scaffold_4_494989,49520 C----------TCGATGAA-------G-CTGGCCCT--------- asb_U3.3_scaffold_4_475125,47534 C----------TCGATGAA-------G-CTGGCCCT--------- pch_U3.4_scaffold_1_979713,97994 C----------GCGAGGAC-------G-TTTGGCTT--------- pch_U3.1_scaffold_16_598839,5990 C----------GCGAGGAC-------G-TTTGACTC--------- pch_U3.2_scaffold_4_997110,99734 C----------GCGAGGAC-------G-TTTGACTC--------- pch_U3.3_scaffold_16_602924,6031 C----------GCGAGGAC-------G-TTTGACTC--------- ppl_U3.1_scaffold_86_109773,1100 C----------TCGAGGAC-------G-TTTGGTTC--------- ppl_U3.3_scaffold_159_130347,130 C----------TCGAGGAC-------G-TTTGGTTC--------- ppl_U3.2_scaffold_30_415191,4154 C----------TCGAGGAC-------G-TTTGGTCC--------- ppl_U3.4_scaffold_27_312738,3129 C----------GCGAGGAC-------G-TTTGGTTC--------- ppl_U3.5_scaffold_147_172561,172 C----------GCGAGGAC-------G-TTTGGTTT--------- han_U3.1_scaffold_06_619688,6199 C----------TCGAGGAC-------G-TTAGGATG--------- han_U3.2_scaffold_06_1978666,197 C----------TCGAGGAC-------G-TTTGGTTC--------- han_U3.3_scaffold_06_1489084,148 C----------TCGAGGAC-------GTTTGGGCTG--------- cvi_U3.1_scaffold_7_340585,34086 A----------TCGATGAA-------G-TCCGGCGG--------- cvi_U3.2_scaffold_3_330560,33083 A----------TCGATGAA-------G-CCCGGCGG--------- cne_U3.1_adopted_3_1423435,14236 A----------TCGAAGAA-------G-CTGG------------- cne_U3.2_adopted_8_892818,893067 A----------TCGAAGAA-------G-CTGGCGGT--------- tme_U3.1_scaffold_3_32286,32531_ A----------TCGAAGAA-------G-CTGGCGAC--------- asp_U3.1_scaffold_59_40266,40528 C----------TCGAAGAA---------CTTGGTCA--------- asp_U3.2_scaffold_63_101395,1016 C----------TCGAAGA--------A-CTCGGTCT--------- rmi_U3.1_scaffold_3_1260839,1261 C----------TCGATGAC---------TTGGGCTC--------- rmi_U3.2_scaffold_4_2443971,2444 C----------TCGATGACTTGG---G-CTCGGCGT--------- rgr_U3.1_scaffold_2_1450682,1450 C----------TCGATGACCTTGA--G-CTCGCTCG--------T rgr_U3.2_scaffold_2_1402058,1402 C----------TCGATGACCTTGA--G-CTCGCTCG--------T sro_U3.1_scaffold_5_953060,95334 T--------CGTCGATGAC-------C-TTGAGTTC-------GC sro_U3.2_scaffold_5_52594,52825_ -----------TCGATGAC-------C-TTGAGTTC--GATATCA sro_U3.3_scaffold_5_41069,41313_ CTTCGCCCTCGTCGATGACCTTGA--G-TTCGATTT-------CA ppa_U3.1 A----------TCGATGAC-------C-TTAGGCCTAGTTCTCAC pti_U3.4_GG705418_754741,754990_ C----------TCGATGAC-------C-TTGGGCTT-----ACTC psr_U3.4_Supercontig_1.14_436005 C----------TCGATGAC-------C-TTGGGCCACTTCTCACC psr_U3.5_Supercontig_1.14_359366 C----------TCGATGAC-------C-TTGGGCCA-CTCCTCAC psr_U3.1_Supercontig_1.78_49588, C----------TCGATGAC-------C-TTGGGCTA---CTCTTC psr_U3.2_Supercontig_1.56_356415 C----------TCGATGAC-------CTTTAGGCTG---CTCTTT psr_U3.3_Supercontig_1.1_322826, C----------TCGATGAC-------CTTTAGGCTT--CTCTATC pgr_U3.3_supercontig_2_94_165205 C----------TCGATGAC-------C-TTGGGCTG----CCTTT pgr_U3.1_supercontig_2_8_379313, C----------TCGATGAC-------C-TTGGGCCA----TTCTT pgr_U3.2_supercontig_2_8_424713, C----------TCGATGAC-------C-TTGGGCCA----TTCTT pti_U3.5_GG705413_312300,312549_ C----------TCGATGAC-------C-TTGGGCTG------CCC pti_U3.7_GG709425_665,908_-_73.9 C----------TCGATGAT-------C-TTGGGCCA--------T pti_U3.6_GG716129_186,418_-_81.3 C----------TCGATGAC-------C-TTGGGCCA--------- pti_U3.1_GG706242_703,946_-_97.8 C----------TCGATGAC-------C-TTGGGCCA--------T pti_U3.2_GG706000_7380,7623___97 C----------TCGATGAC-------C-TTGGGCCA--------T pti_U3.3_GG705419_1215952,121619 C----------TCGATGAC-------C-TTGGGCCA--------T mgl_U3.1_mgl_sf_1_2_45045,45312_ T----------TCGAGGCCTT-----T-GTGGGTTC--------- sre_U3.1_chromosome_3_222005,222 GGAG------GGCG---ATTCTAGCCG-CCCGCCGA--------- uma_U3.1_Cont_1.56_33573,33838__ G----------ACGATGATTCTAGCCG-CCCGCCGA--------- pat_U3.1_scaffold_00022 -----------CCATTGATTCTAGCCG-CCCGCCGA--------- wse_U3.1_scaffold_15_63259,63499 C----------TCGATGACGTGCAC-G-CTTACCTA--------- wse_U3.2_scaffold_15_90061,90300 C----------TCGATGACGTGCAC-G-CTTACCTA--------- wse_U3.3_scaffold_15_76505,76744 C----------TCGATGACGTGCAC-G-CTTACCTA--------- sli_U3.1_scaffold_1_539903,54023 -----------TCGTTGAG-------ATTTGGTCGGATCGCGCCG abi_U3.1_scaffold_17_263518,2637 -----------------------------TTCCATTCTC------ pos_U3.1_scaffold_05_1058485,105 ----------------------------TTCCGGTGTGC------ pos_U3.2_scaffold_05_631542,6317 ----------------------------GCTCAGTTTGC------ cci_U3.2_scaffold_17_64279,64492 ----------------------------GTTCGTTGGGT------ cci_U3.1_scaffold_173_28928,2915 ----------------------------GTTTGTTGGGT------ sco_U3.1_scaffold_5_503574,50379 ----------------------------GTCCGACGGGA------ sco_U3.2_scaffold_8_1062161,1062 ----------------------------GCTTTCTGGGG------ lbi_U3.2_scaffold_12_174103,1743 -----------------------------GTCTTCTCAA------ lbi_U3.4_LG_4_3924377,3924603_-_ ---------------------------GTTTCTTTGGGC------ lbi_U3.5_LG_4_4002317,4002541_-_ ----------------------------ACCCATCGGGC------ lbi_U3.1_LG_4_3997044,3997267_-_ ----------------------------GCTCATTGGGT------ lbi_U3.3_LG_4_3984740,3984964_-_ ----------------------------GCTCATTGGGC------ lbi_U3.7_LG_4_4150722,4150946___ ----------------------------GCTCATTGGAC------ lbi_U3.6_scaffold_20_477047,4772 ----------------------------GCTCATTGGCG------ sla_U3.3_scaffold_6_338246,33847 -----------------------------TTCTTCGTTT------ sla_U3.5_scaffold_11_128886,1291 ----------------------------GGTCTGTCATT------ sla_U3.6_scaffold_11_132805,1330 ----------------------------GGTCTGTCATT------ sla_U3.1_scaffold_8_2248369,2248 ----------------------------GTTTTGTTGTC------ sla_U3.4_scaffold_6_2716474,2716 ----------------------------GTTCTGTTGTC------ sla_U3.2_scaffold_6_385578,38580 -----------------------------TTCTTTGCTT------ asb_U3.4_scaffold_14_935019,9352 ---------------------------CGTTCCTTGCTC------ asb_U3.2_scaffold_14_655106,6553 ---------------------------CGTTCTTTGCTC------ asb_U3.1_scaffold_4_494989,49520 ---------------------------CGTTCTTTGCTC------ asb_U3.3_scaffold_4_475125,47534 ---------------------------TGTTCTTTGCTC------ pch_U3.4_scaffold_1_979713,97994 ---------------------------ACCTTCAGTGTC------ pch_U3.1_scaffold_16_598839,5990 ----------------------------GCGTTCTGCGC------ pch_U3.2_scaffold_4_997110,99734 ----------------------------GCGTTCTGCGC------ pch_U3.3_scaffold_16_602924,6031 ----------------------------GCGTTCTGCGC------ ppl_U3.1_scaffold_86_109773,1100 ----------------------------ACTCGTCTGCG------ ppl_U3.3_scaffold_159_130347,130 ----------------------------ACTCGTCTGCG------ ppl_U3.2_scaffold_30_415191,4154 -----------------------------GCGCCCCTGT------ ppl_U3.4_scaffold_27_312738,3129 ----------------------------GTTCGCTGCGG------ ppl_U3.5_scaffold_147_172561,172 ----------------------------GTTTGCTGTGT------ han_U3.1_scaffold_06_619688,6199 ----------------------------GCTTGATTGAG------ han_U3.2_scaffold_06_1978666,197 ----------------------------GTGTTTCGGAG------ han_U3.3_scaffold_06_1489084,148 --------------------------------CTTCGTC------ cvi_U3.1_scaffold_7_340585,34086 --------------------------GAGGTCTTTATGA------ cvi_U3.2_scaffold_3_330560,33083 GGGATC-----------------------TTGTATAATG------ cne_U3.1_adopted_3_1423435,14236 -----------------------------CGGTATGGTA------ cne_U3.2_adopted_8_892818,893067 ------------------------CGCATACCTGCCAA------- tme_U3.1_scaffold_3_32286,32531_ -----------------------------------GAAT------ asp_U3.1_scaffold_59_40266,40528 -----------------------------------GGAA------ asp_U3.2_scaffold_63_101395,1016 -----------------------------------AAGG------ rmi_U3.1_scaffold_3_1260839,1261 ------GGTGTGCACCAGAGACGACTCGTTTCGTTCTCT------ rmi_U3.2_scaffold_4_2443971,2444 -----------GCACCAGAGACGACTCGTTCGTTCTCTG------ rgr_U3.1_scaffold_2_1450682,1450 ACCGCCCCCTCGTTTCCGAGGTGGGTTGTCCGGCCTCTG------ rgr_U3.2_scaffold_2_1402058,1402 ACCGCCCCCTCGTTTCCGAGGTGGGTTGTCCGGCCTCTG------ sro_U3.1_scaffold_5_953060,95334 TTCACACCTCCCTCTCCTTCGTGAGTTGGGCTGTCCGGT------ sro_U3.2_scaffold_5_52594,52825_ CACCTCCCTCTCCTTTTAGTCGAGTTTGGGTTGTCCGGT------ sro_U3.3_scaffold_5_41069,41313_ CACCTCCCTCTCCTTTTAGTCGAGTTTGGGTTGTCCGGT------ ppa_U3.1 CTGTTCATCTTGCTTGGTCAATTTTGGAACTTGAAAGGCTAGTCA pti_U3.4_GG705418_754741,754990_ CGCCGCCTCATCTCTCAGGTGATGGTTG-TCAGGCTCAC------ psr_U3.4_Supercontig_1.14_436005 GCCTCTTTCATTTTTTTTTTGGAAGAGGTCTCGTCGTGC------ psr_U3.5_Supercontig_1.14_359366 CGCCTCTTTCATTTTCTTTTGGAAGGGGTCTCGTCGTGC------ psr_U3.1_Supercontig_1.78_49588, ACCGCTCTTATCTCTTTCTGGATCTGAGTTTCGTCGTGC------ psr_U3.2_Supercontig_1.56_356415 CACCGCCTTTCTTCTCTTTGGAACAAAGTGTCGTCGTGC------ psr_U3.3_Supercontig_1.1_322826, ACCGCCTTTGCTCCTTGTTTGAGTAAAGTGTCGTCGTGT------ pgr_U3.3_supercontig_2_94_165205 CCGCCTCCTCTTGTCTCTTCTGATTCGAG-CTGTCGTGC------ pgr_U3.1_supercontig_2_8_379313, CCACCACCTCTT-TCTTGTTTGATTGGGGATTGTCGTGC------ pgr_U3.2_supercontig_2_8_424713, CCACCACCTCTT-TCTTGTTTGATTGGGGATTGTCGTGC------ pti_U3.5_GG705413_312300,312549_ TCCACCTCCTCGTCCCTCTGGGGACTTGGCTTGTCGTGC------ pti_U3.7_GG709425_665,908_-_73.9 CCTCCACCACCCCGTCTTCATTGACAGGGCTCGTCGTGC------ pti_U3.6_GG716129_186,418_-_81.3 -------------TCCTCCACCACCCTGTCTTCATTGAC------ pti_U3.1_GG706242_703,946_-_97.8 CCTCCACCACCCCGTCTTCACTGACAGGGCTCGTCGTGC------ pti_U3.2_GG706000_7380,7623___97 CCTCCACCACCCCGTCTTCACTGACAGGGCTCGTCGTGC------ pti_U3.3_GG705419_1215952,121619 CTTCCACCACCCCGTCTTCACTGACAGGGCTCGTCGTGC------ mgl_U3.1_mgl_sf_1_2_45045,45312_ -----------------------------TTGGGAATGT------ sre_U3.1_chromosome_3_222005,222 --------------------------------------------- uma_U3.1_Cont_1.56_33573,33838__ --------------------------------------------- pat_U3.1_scaffold_00022 --------------------------------------------- wse_U3.1_scaffold_15_63259,63499 -----------------------------TACGCCGGTG------ wse_U3.2_scaffold_15_90061,90300 -----------------------------TACGCCGGTG------ wse_U3.3_scaffold_15_76505,76744 -----------------------------TACGCCGGTG------ sli_U3.1_scaffold_1_539903,54023 CGCGGCGCCTGTCCTCACGGGCACGGTCGCTCGCGTCGT------ abi_U3.1_scaffold_17_263518,2637 -CT---GAGCTTGTATG---AGCACTTGAGAGGA-CTTGTCAGC- pos_U3.1_scaffold_05_1058485,105 -TTTGCTCTTCGG-------AGTGGGCTCCTGGG-GCTGCCAGC- pos_U3.2_scaffold_05_631542,6317 -TTGTGCTCTTCGG------AGCCGGCGAATGGG-CTGGCCAGC- cci_U3.2_scaffold_17_64279,64492 -TC---GCTCGCAAG-----AGCTGCCTGACAGA-CTAACCAGC- cci_U3.1_scaffold_173_28928,2915 -TTTTGGCTCGCGAG-----AGCTGCTCGATGAA-CTCGTCAGC- sco_U3.1_scaffold_5_503574,50379 -TCTGCTCTTCG--------GGGCGTCTCGGAGG-GTGGTCAGC- sco_U3.2_scaffold_8_1062161,1062 -TCTGCTCTTCG--------GAGCGCTCTGGAGA-CTGGTCAGC- lbi_U3.2_scaffold_12_174103,1743 -GC---AACTTGAAAA----AGTTTCTCGAGAGA-TTTGCCAGC- lbi_U3.4_LG_4_3924377,3924603_-_ -AT---GCTTGTATG-----AGCTGCTTGGAGGA-CTTGTCAGC- lbi_U3.5_LG_4_4002317,4002541_-_ -GT---GCTTTTTAA-----AGCCGCTTGAAGGA-CTTGCCAGC- lbi_U3.1_LG_4_3997044,3997267_-_ -GT---GCTTTTTAA-----AGCCGCTTGAAGGA-CTTGCCAGC- lbi_U3.3_LG_4_3984740,3984964_-_ -GT---GCATTTTAA-----AGCCGCTTGAGGAA-CTTGCCAGC- lbi_U3.7_LG_4_4150722,4150946___ -GT---GCTTTCTGA-----AGCCTCTTGAAGAA-CTTGCCAGA- lbi_U3.6_scaffold_20_477047,4772 -TG---CTTTTTGA------AGCTGCTTGAAGAA-CTTGCCAGC- sla_U3.3_scaffold_6_338246,33847 -GCAACTGTTTC--------AGTTGCTCGCGAGT-CAAGCCAGC- sla_U3.5_scaffold_11_128886,1291 -GGATTGCTTTTGC------AGTTTTGATGACGA-CAAGCCAGC- sla_U3.6_scaffold_11_132805,1330 -GGATTGCTTTTGC------AGTTTTGATGATGA-CAAGCCAGC- sla_U3.1_scaffold_8_2248369,2248 -TGGCTGCTTTTGC------AGGTTTGATGACGA-CGAGCCAGC- sla_U3.4_scaffold_6_2716474,2716 -TGACTGCTTTTGC------AGTTTTGATAATGA-CAAGCCAGC- sla_U3.2_scaffold_6_385578,38580 -GCAGCTGTTTC--------AGTTGCTCGCAAGT-CGAGCCAGC- asb_U3.4_scaffold_14_935019,9352 -TC---CGCTTC--------GGCGGTCTGCAGCC-GTGGGCCGC- asb_U3.2_scaffold_14_655106,6553 -TC---CGTTTC--------GGCGGTCTGCAGAC-GTGGACCGC- asb_U3.1_scaffold_4_494989,49520 -TC---TGCTTC--------GGCGGTCTGCAGGC-GAGGGCCGC- asb_U3.3_scaffold_4_475125,47534 -TC---TGCTTT--------AGCGGTCTGCAGGC-GAGGGCCGT- pch_U3.4_scaffold_1_979713,97994 -GTGCCGGTTTC--------GGTCGCACAGGAGG-TTCGCCAGC- pch_U3.1_scaffold_16_598839,5990 -GCACTGGTTTC--------AGTCGCGCGGGATG-CTTGTCAGC- pch_U3.2_scaffold_4_997110,99734 -GCACTGGTTTC--------AGTCGCGCGGGATG-CTTGTCAGC- pch_U3.3_scaffold_16_602924,6031 -GCACTGGTTTC--------AGTCGCGCGGGATG-CTTGTCAGC- ppl_U3.1_scaffold_86_109773,1100 -CC---CTCTTCG-------AGTGGTGCGGATGG-TGAGCCAGC- ppl_U3.3_scaffold_159_130347,130 -CC---TTCTTCG-------AGTGGTGCGGATGG-TGAGCCAGC- ppl_U3.2_scaffold_30_415191,4154 -CT---GCCCTTTG------GGCGAGACGGGAGC-CGGGTCAAC- ppl_U3.4_scaffold_27_312738,3129 -AC---GCCTTTG-------GGCTGTGCGGCGGA-CTTGCCAGC- ppl_U3.5_scaffold_147_172561,172 -AC---GCCTTTG-------GGCTGTGCGGCGGA-CTTGCCAGC- han_U3.1_scaffold_06_619688,6199 -TG-----------------TACCATCAGGTATA-CTCGGCGGC- han_U3.2_scaffold_06_1978666,197 -GC---GCCTTGT-------GCTGCCTCTGGGGC-TGAACCAGC- han_U3.3_scaffold_06_1489084,148 -CT---GGCTCCAA------GGAGCTAGTGCGCT-GTGCCCAGC- cvi_U3.1_scaffold_7_340585,34086 -GCGAAGACACC--------GTTTCGATGGTGTC-GACGTTGAG- cvi_U3.2_scaffold_3_330560,33083 -AA---GACATC--------GTCTTGATGGTGTC-GACGTTGGG- cne_U3.1_adopted_3_1423435,14236 -CC---AGTTTTGA------CCTCTTGGGGAAAG-CTTGGGAGA- cne_U3.2_adopted_8_892818,893067 --------------------CCCTCCGGGGAAGG-TATGGGAGC- tme_U3.1_scaffold_3_32286,32531_ -CT---GACCTT--------TTCGAAAGAAGAGT-GAGGACGAG- asp_U3.1_scaffold_59_40266,40528 -GG---AACCTC--------AACCTGAAAAGGTT-GTTGACAGCT asp_U3.2_scaffold_63_101395,1016 -GG---AACCTC--------AGCCTGAAAAGGTT-GTTGACAGCT rmi_U3.1_scaffold_3_1260839,1261 -GTGTTGTCTTCTT------TTTCATGAGCTGGC-TTAGCTGCC- rmi_U3.2_scaffold_4_2443971,2444 -TG---TTGTCT--------TCTTTTCACGAGCT-GGCGTAACT- rgr_U3.1_scaffold_2_1450682,1450 -CT---GCCCCCGGCTC---GCCTCGCGCGGTCT-AGGGCCGGA- rgr_U3.2_scaffold_2_1402058,1402 -CT---GCCCCCGGCTC---GCCTCGCGCGGTCG-AGGGCCGGA- sro_U3.1_scaffold_5_953060,95334 -TC---TCTTCT--------TTCCCTCTGGGACT-GAAAGCAGA- sro_U3.2_scaffold_5_52594,52825_ -TC------------------TGTCCGTCTCTCG-AGACTTGGA- sro_U3.3_scaffold_5_41069,41313_ -TC------------------TGTCCGTCTTTCG-AGACTCGGA- ppa_U3.1 ATCATTGTCTTTGCAT----ATTTGCAAAGTTGATTGGCTCAGC- pti_U3.4_GG705418_754741,754990_ -CT---CGTTCT--------ACCCGTAGAGCGCT-GGGAC--GC- psr_U3.4_Supercontig_1.14_436005 -TT---GCTTTT--------GTGCTTTGTTCACT-TGAGCTCGC- psr_U3.5_Supercontig_1.14_359366 -TT---GCTTTT--------GTGCTTTGTCCACT-TGAGCTTGC- psr_U3.1_Supercontig_1.78_49588, -TTGCTCGTTTTC-------TCTCTTCGGAGGTT-CTTGCTTGC- psr_U3.2_Supercontig_1.56_356415 -GA---GCTCT---------TTCTCTTCGGAGGT-CTTGCTTGC- psr_U3.3_Supercontig_1.1_322826, -GA---GCTTTTTC------ACTCTTCGGAGGAT-TCTGCTTGC- pgr_U3.3_supercontig_2_94_165205 -TC---GCTTCTG-------ATCCTTCGCGGTCT-TGAGCTTGC- pgr_U3.1_supercontig_2_8_379313, -TT---GCCT-TG-------GCCTCTCGAGGTCTCTGGTTTTGC- pgr_U3.2_supercontig_2_8_424713, -TT---GCCT-TG-------GCCTCTCGAGGTCTCTGGTCTTGC- pti_U3.5_GG705413_312300,312549_ -TC---GCTTGTC-------GTCCCACCGGACTT-CAAGCTGGC- pti_U3.7_GG709425_665,908_-_73.9 -TC---GTCTT---------GACCTTCCGGAGTC-TTGGCTGGC- pti_U3.6_GG716129_186,418_-_81.3 -AGGTCGTCTT---------GACCTTCCGGGGTC-TTGGCTGGC- pti_U3.1_GG706242_703,946_-_97.8 -TT---CTCTT---------GACCTTTCGGGGTC-TTGGCTGGC- pti_U3.2_GG706000_7380,7623___97 -TT---CTCTT---------GACCTTTCGGGGTC-TTGGCTGGC- pti_U3.3_GG705419_1215952,121619 -TC---GTCTT---------GACCTTCCGGGGTC-TTGGCTGGC- mgl_U3.1_mgl_sf_1_2_45045,45312_ -AG---GTTCTTGG------GACGTTCGGATTCT-TCGAATTGC- sre_U3.1_chromosome_3_222005,222 -GG---ACCTTT--------GCCCGAGGAGCAAC-ATGGCTTGC- uma_U3.1_Cont_1.56_33573,33838__ -GG---ACCTTA--------GCCCGAGGAGCAAC-ATGGCTTGC- pat_U3.1_scaffold_00022 -GG---ACCTTT--------GCCCGACGAGCAAC-ACGGCTTGC- wse_U3.1_scaffold_15_63259,63499 -TT---GCTTCCAAC-----ATTTGGTGTGGTTT-GTCGTGAGG- wse_U3.2_scaffold_15_90061,90300 -TT---GCTTCAAC------ATTTGGCGTGGTTT-GTCGTGAGG- wse_U3.3_scaffold_15_76505,76744 -TT---GCTTCAAC------ATTTGGCGTGGTTT-GTCGTGAGG- sli_U3.1_scaffold_1_539903,54023 -CCATGGCCCGCTCGCTGCCGGCCTGCGAGGGCT-GGCTCGGGT- abi_U3.1_scaffold_17_263518,2637 --------------------------------------------- pos_U3.1_scaffold_05_1058485,105 --------------------------------------------- pos_U3.2_scaffold_05_631542,6317 --------------------------------------------- cci_U3.2_scaffold_17_64279,64492 --------------------------------------------- cci_U3.1_scaffold_173_28928,2915 --------------------------------------------- sco_U3.1_scaffold_5_503574,50379 --------------------------------------------- sco_U3.2_scaffold_8_1062161,1062 --------------------------------------------- lbi_U3.2_scaffold_12_174103,1743 --------------------------------------------- lbi_U3.4_LG_4_3924377,3924603_-_ --------------------------------------------- lbi_U3.5_LG_4_4002317,4002541_-_ --------------------------------------------- lbi_U3.1_LG_4_3997044,3997267_-_ --------------------------------------------- lbi_U3.3_LG_4_3984740,3984964_-_ --------------------------------------------- lbi_U3.7_LG_4_4150722,4150946___ --------------------------------------------- lbi_U3.6_scaffold_20_477047,4772 --------------------------------------------- sla_U3.3_scaffold_6_338246,33847 --------------------------------------------- sla_U3.5_scaffold_11_128886,1291 --------------------------------------------- sla_U3.6_scaffold_11_132805,1330 --------------------------------------------- sla_U3.1_scaffold_8_2248369,2248 --------------------------------------------- sla_U3.4_scaffold_6_2716474,2716 --------------------------------------------- sla_U3.2_scaffold_6_385578,38580 --------------------------------------------- asb_U3.4_scaffold_14_935019,9352 --------------------------------------------- asb_U3.2_scaffold_14_655106,6553 --------------------------------------------- asb_U3.1_scaffold_4_494989,49520 --------------------------------------------- asb_U3.3_scaffold_4_475125,47534 --------------------------------------------- pch_U3.4_scaffold_1_979713,97994 --------------------------------------------- pch_U3.1_scaffold_16_598839,5990 --------------------------------------------- pch_U3.2_scaffold_4_997110,99734 --------------------------------------------- pch_U3.3_scaffold_16_602924,6031 --------------------------------------------- ppl_U3.1_scaffold_86_109773,1100 --------------------------------------------- ppl_U3.3_scaffold_159_130347,130 --------------------------------------------- ppl_U3.2_scaffold_30_415191,4154 --------------------------------------------- ppl_U3.4_scaffold_27_312738,3129 --------------------------------------------- ppl_U3.5_scaffold_147_172561,172 --------------------------------------------- han_U3.1_scaffold_06_619688,6199 -------------------------------------CTTCCTGC han_U3.2_scaffold_06_1978666,197 --------------------------------------------- han_U3.3_scaffold_06_1489084,148 --------------------------------------------- cvi_U3.1_scaffold_7_340585,34086 -----------------------------------------ATCC cvi_U3.2_scaffold_3_330560,33083 -----------------------------------------ATCT cne_U3.1_adopted_3_1423435,14236 -------------------------------------TACCGTGG cne_U3.2_adopted_8_892818,893067 -------------------------------------GACCGTGG tme_U3.1_scaffold_3_32286,32531_ ---------------------------------------TCGCGG asp_U3.1_scaffold_59_40266,40528 GAAGTGACGATGTAAAAGTCGGAGCGGAGGCGTCCTTCTGGACCT asp_U3.2_scaffold_63_101395,1016 GAAGTGACGATGTAAAAGTCGGAACGGAAGTGTCTTCATGGACCT rmi_U3.1_scaffold_3_1260839,1261 ----------ATGCGATTGAAAAAGAGACCGTGCCGTCGTAGCAT rmi_U3.2_scaffold_4_2443971,2444 --------GCCATGCGAATGGAAAGAGACCGTGCCGTCGTAGCAT rgr_U3.1_scaffold_2_1450682,1450 -------------------------GGCTGTACGGCGCAGCGCGG rgr_U3.2_scaffold_2_1402058,1402 -------------------------GGCTGTACGGCGCAGCGCGG sro_U3.1_scaffold_5_953060,95334 ---------------------------ACTGTGTGACGAACGTGT sro_U3.2_scaffold_5_52594,52825_ ---------------------------ACTGTGTGACGGACGTGG sro_U3.3_scaffold_5_41069,41313_ ---------------------------ACTGTGTGACGGACGTGG ppa_U3.1 -------------------------------TGTGGGGCTGGCCA pti_U3.4_GG705418_754741,754990_ -------------------------------TGTGGAGTTGGCCG psr_U3.4_Supercontig_1.14_436005 -------------------------------TGTGGGCGTGGCCA psr_U3.5_Supercontig_1.14_359366 -------------------------------TGTGGGGGTGGCCA psr_U3.1_Supercontig_1.78_49588, -------------------------------TGTGGAGATGGCCA psr_U3.2_Supercontig_1.56_356415 -------------------------------TGTGGGAGTGGCCA psr_U3.3_Supercontig_1.1_322826, -------------------------------TGTGGGAGTGGCCA pgr_U3.3_supercontig_2_94_165205 -------------------------------TGTGGAAGTGGCCA pgr_U3.1_supercontig_2_8_379313, -------------------------------TGTGGGAATGGCCA pgr_U3.2_supercontig_2_8_424713, -------------------------------TGTGGGAATGGCCA pti_U3.5_GG705413_312300,312549_ -------------------------------TGTGGGAGTGGCCG pti_U3.7_GG709425_665,908_-_73.9 -------------------------------TGTGGCTGTGGCCA pti_U3.6_GG716129_186,418_-_81.3 -------------------------------TGTGGTTGTGGCCA pti_U3.1_GG706242_703,946_-_97.8 -------------------------------TGTGGTTGTGGCCA pti_U3.2_GG706000_7380,7623___97 -------------------------------TGTGGTTGTGGCCA pti_U3.3_GG705419_1215952,121619 -------------------------------TGTGGTTGTGGCCA mgl_U3.1_mgl_sf_1_2_45045,45312_ -----------------------------TCAGCAGTCGTGGGGG sre_U3.1_chromosome_3_222005,222 --------GACCTTTAGTGGGAGCTTGTTCCTGAGCTCCGAGGGA uma_U3.1_Cont_1.56_33573,33838__ --------GACCTTAATTGGGAGCTTGTTCCTGAGCTCCGAGGGA pat_U3.1_scaffold_00022 --------GACCTTAAGTGGGAGCTTGTTCCTGAGCTCCGAGGGA wse_U3.1_scaffold_15_63259,63499 --------------------------------------------- wse_U3.2_scaffold_15_90061,90300 --------------------------------------------- wse_U3.3_scaffold_15_76505,76744 --------------------------------------------- sli_U3.1_scaffold_1_539903,54023 -------------------------GGGTCGCGCGGTTCGTGCCA abi_U3.1_scaffold_17_263518,2637 --GAGACGAGCGTTT------------GTCTGATG-GAT pos_U3.1_scaffold_05_1058485,105 --GGGTCGAGCGTCT------------GTCTGATG-GAT pos_U3.2_scaffold_05_631542,6317 --GGATCGAGCGTCT------------GTCTGATG-GAT cci_U3.2_scaffold_17_64279,64492 --GAGTTGAGCGTCA------------GTCTGATG-GAT cci_U3.1_scaffold_173_28928,2915 --GAGTTGAGTGTCT------------GTCTGATG-GAT sco_U3.1_scaffold_5_503574,50379 --GAGCTGGGCGTCT------------GTCTGATG-GAT sco_U3.2_scaffold_8_1062161,1062 --GAGCTGGGTGTCT------------GTCTGATG-GAT lbi_U3.2_scaffold_12_174103,1743 --GAGTTCAGCGTCT------------GTCTGATG-GAT lbi_U3.4_LG_4_3924377,3924603_-_ --GAGTTGAGTGTCT------------GTCTGATG-GAT lbi_U3.5_LG_4_4002317,4002541_-_ --GAGTCGAGCGTCT------------GTCTGATG-GAT lbi_U3.1_LG_4_3997044,3997267_-_ --GAGTTGAGCGTCT------------GTCTGATG-GAT lbi_U3.3_LG_4_3984740,3984964_-_ --GAGTTGAGCGTCT------------GTCTGATG-GAT lbi_U3.7_LG_4_4150722,4150946___ --GAGTTGAGTGTCC------------GTCTGATG-GAT lbi_U3.6_scaffold_20_477047,4772 --GAGTTGAGTGTTT------------GTCTGATG-GAT sla_U3.3_scaffold_6_338246,33847 --GGGTCGAACGTCT------------GTCTGATG-GAT sla_U3.5_scaffold_11_128886,1291 --GAGGTTAGCGTCT------------GTCTGATG-GAT sla_U3.6_scaffold_11_132805,1330 --GAGGTTGGCGTCT------------GTCTGATG-GAT sla_U3.1_scaffold_8_2248369,2248 --GAGGTTGGCGTCT------------GTCTGATG-GAT sla_U3.4_scaffold_6_2716474,2716 --GGGGATAGCGTCT------------GTCTGATG-GAT sla_U3.2_scaffold_6_385578,38580 --GGGTCGAGCGTCT------------GTCTGATG-GAT asb_U3.4_scaffold_14_935019,9352 --GGGGTTGCGGCTT------------GTCTGATG-GAT asb_U3.2_scaffold_14_655106,6553 --GGGGTTGCGGCTT------------GTCTGATG-GAT asb_U3.1_scaffold_4_494989,49520 --GGGGTTGAGGCTT------------GTCTGATG-GAT asb_U3.3_scaffold_4_475125,47534 --AGGGTTGCGACTT------------GTCTGATG-GAT pch_U3.4_scaffold_1_979713,97994 --GGGTTGGACGTCA------------GTCTGATG-GAC pch_U3.1_scaffold_16_598839,5990 --GGGTGGAACGTCG------------GTCTGATG-GAT pch_U3.2_scaffold_4_997110,99734 --GGGTGGAACGTCA------------GTCTGATG-GAT pch_U3.3_scaffold_16_602924,6031 --GGGTGGAACGTCA------------GTCTGATG-GAT ppl_U3.1_scaffold_86_109773,1100 --GAGTTGGACGTTT------------GTCTGATG-GAT ppl_U3.3_scaffold_159_130347,130 --GAGTTGGACGTTT------------GTCTGATG-GAT ppl_U3.2_scaffold_30_415191,4154 --GAGTTGGGCGTTT------------GTCTGATG-GAT ppl_U3.4_scaffold_27_312738,3129 --GAGTTGGGCGTAT------------GTCTGATG-GAT ppl_U3.5_scaffold_147_172561,172 --GAGTTGGGCGTAT------------GTCTGATG-GAT han_U3.1_scaffold_06_619688,6199 --GAGTTGCGTGTTT------------GTCTGATG-GAT han_U3.2_scaffold_06_1978666,197 ---GAGTGCGCGTTT------------GTCTGATG-GAT han_U3.3_scaffold_06_1489084,148 --GAGTGGGACATCT------------GTCTGATG-GAT cvi_U3.1_scaffold_7_340585,34086 --TTCGTGGGCGTTTCATACGAACCGAGTCTGATG-GGT cvi_U3.2_scaffold_3_330560,33083 --CTCGTGGGCGTTTCATACGAAGCGAGTCTGATG-GGT cne_U3.1_adopted_3_1423435,14236 --GCTGGAGCGGGCT------------TTCTGATC-GAC cne_U3.2_adopted_8_892818,893067 --GCTGGAGCGGGCT------------TTCTGATC-GAC tme_U3.1_scaffold_3_32286,32531_ --GCGAGGGCGGGAT------------TTCTGATC-GAC asp_U3.1_scaffold_59_40266,40528 --GGGATATGAGTTA------------CTCTGAGA-GGG asp_U3.2_scaffold_63_101395,1016 --GGGATGCGAGTTA------------CTCTGAGC-GGG rmi_U3.1_scaffold_3_1260839,1261 --GAGGTGCGGCTTC------------GTCTGAAG-TCG rmi_U3.2_scaffold_4_2443971,2444 --GAGGTGCGACTTC------------GTCTGAAG-CCG rgr_U3.1_scaffold_2_1450682,1450 --TGGATGCGCACCT------------TTCTGAAC-CTG rgr_U3.2_scaffold_2_1402058,1402 --TGGATGCGCACCT------------TTCTGAAC-CTG sro_U3.1_scaffold_5_953060,95334 --GGGATGTGTCCTG------------GACTGAGC-CTG sro_U3.2_scaffold_5_52594,52825_ --TGGATGTGACCTG------------GACTGAGC-TCG sro_U3.3_scaffold_5_41069,41313_ --TGGATGTGACCTG------------GACTGAGC-CCG ppa_U3.1 --GGGATGCGAGCCA------------ATCTGAAC-TCG pti_U3.4_GG705418_754741,754990_ --GAAATGGGGGCTC------------TTCTGAAC-TTG psr_U3.4_Supercontig_1.14_436005 --GAAATAGAAACTC------------ATCTGAAC--TT psr_U3.5_Supercontig_1.14_359366 --GAAATAGAAACTC------------ATCTGAAC--TT psr_U3.1_Supercontig_1.78_49588, --GAAATAGAAACTC------------GACTGAAC-TTA psr_U3.2_Supercontig_1.56_356415 --GAAATAGAAACTC------------TTCTGAAC--TT psr_U3.3_Supercontig_1.1_322826, --GAAATAGAAACT------------------------- pgr_U3.3_supercontig_2_94_165205 --GAAATAGAAACTC------------TTCTGAAC--TT pgr_U3.1_supercontig_2_8_379313, --GAAATAGAAACTC------------TTCTGAAC--TT pgr_U3.2_supercontig_2_8_424713, --GAAATAGAAACTC------------TTCTGAAC--TT pti_U3.5_GG705413_312300,312549_ --GAAACAGAAACTC------------TTCTGAAC--TT pti_U3.7_GG709425_665,908_-_73.9 --GAAATAGGGACTC------------TTCTGAAC--TT pti_U3.6_GG716129_186,418_-_81.3 --GAAATAGAGACTC------------TTCTGAAC--TT pti_U3.1_GG706242_703,946_-_97.8 --GAAATAGAGACTC------------TTCTGAAC--TT pti_U3.2_GG706000_7380,7623___97 --GAAATAGAGACTC------------TTCTGAAC--TT pti_U3.3_GG705419_1215952,121619 --GAAATAGAGACTC------------TTCTGAAC--TT mgl_U3.1_mgl_sf_1_2_45045,45312_ --GGATTGGCCGTCC----------AACTCTGATA-GAC sre_U3.1_chromosome_3_222005,222 --GGGTTGGCCGCTC----------GTTTCTGATA-GAC uma_U3.1_Cont_1.56_33573,33838__ --GGGTTGGCCGCTC----------GTTTCTGATA-GAC pat_U3.1_scaffold_00022 --GGGTTGGCCGCTC----------GTTTCTGATA-GAT wse_U3.1_scaffold_15_63259,63499 --GATTTGGAGTGCT------------TTCTGAGGCCAT wse_U3.2_scaffold_15_90061,90300 --GATTTGGAGTGCT------------TTCTGAGGCCAT wse_U3.3_scaffold_15_76505,76744 --GATTTGGAGTGCT------------TTCTGAGGCCAT sli_U3.1_scaffold_1_539903,54023 TCGGGACGTGCGTCT----------GAGTCTGAGG-GCG