# STOCKHOLM 1.0 MAMMALIA Y #=GF AU Infernal 1.0.1 #=GC CS 3332353..333........333.22333.......33322.....33334..........433333532333. #=GC BP +++++++..+++c......c+++.+++++.......+++++.....+++++..........++++++++++++. NC_004920_Y_5246_5311_m GGUAAAAUGGCUGAGU---AGGCAUUAGACUGUAAAUCUAAUCAC.AGAGGUAA....aGUCCUCUUUUUACCA NC_010304_Y_5245_5311_m GGUAAGAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAACAC.AGAGGUAUa...aGCCCUCUUUUUACCA NC_010301_Y_5248_5314_m GGUAGAAUGGCUGAUGA--AAGCAUUAGACUGUAAAUCUAAUUAU.GAGGUUAU....aUCCCCUCUUUUGCCA NC_004919_Y_5259_5324_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAUUAU.GAGGUAGU.....AUUCCUCUUUUGCCA NC_004921_Y_5241_5304_m GGUAAAAUGGCUGAGUU--AAGCAUUAGACUGUAAAUCUAAAGAC.GGGGC--A.....GAGCCCCUUUUACCA NC_004026_Y_5246_5310_m GGUAAAAUGGCUGAGUA--AGGCAUUAGACUGUAAAUCUAACCAU.GGGACGU-.....UAGUCCCUUUUACCA NC_005129_Y_5264_5327_m GGUAAAAUGGCUGAGU---AAGUAUUAGACUGUAAAUCUAACCAC.AGAGAGU-.....AAUCUCUUUUUACCA NC_000934_Y_5264_5327_m GGUAAAAUGGCUGAGU---AGGCAUUAGACUGUAAAUCUAACCAC.AGAGAGU-.....AAUCUCUUUUUGCCA NC_009574_Y_5266_5330_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAACAC.AGAGGGUA.....GUCCUCUUUUUACCA NC_007596_Y_5266_5329_m GGUAAAAUGGCUGAGU---AAGUAUUAGACUGUAAAUCUAACCAC.AGAGAGU-.....AAUCUCUUUUUACCA NC_003314_Y_5259_5325_m GGUAAAAUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAGUAC.AGGAGUUU....aACCUCCUUUUUAUCA NC_010302_Y_5268_5334_m GGUAAAAUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAGUAC.AGGAGUAU....aGCCUCCUUUUUACCA NC_002631_Y_5238_5308_m AGUAAAAUGGCUGAGUAAUAGGCAUUAGACUGUAAAUCUAAAGAC.AGGAGGGAg..gcUCCUCCUUUUUACUA NC_002078_Y_5263_5330_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUUAg..uaAUCCCCUUUUUACCA NC_004031_Y_5274_5338_m GGUGAGGUGGCUGAGU---AAGCGUUAGACUGUAAAUCUAAGCAC.GGGGGUAG.....GUCCCUCCUUCACCA NC_004028_Y_5272_5337_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUG....aGCCCUCUUUUUACCA NC_001913_Y_5281_5346_m GGUAAAAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGAGGUUA....aGCCCUCUUUUUACCA NC_003033_Y_5263_5328_m GGUAAGGUGGCCGAGU---AGGCAUUAGGCUGUAAAUCUAACUAC.AGGGGUUG....aGCCCCCUUCUUACCA NC_011029_Y_5263_5330_m GGUAAGGUGGCCGAAUA--AGGCAUUAGGCUGUAAAUCUAACUAU.GGGGGUUUg...aGUCCCCUUCUUACCA NC_005358_Y_5260_5326_m GGUAAGGUGGCCGAGU---AGGCAUUAGGCUGUAAAUCUAAUUAC.GGGGGUUUg...aGUCCCUUUCUUACCA NC_000884_Y_5250_5316_m GAUAAGAUGGCCGAGU---AGGCGUUAGACUGUAAAUCUAAGUAC.AGAGGUUGa...aGGCCUCUUCUUAUCA NC_002658_Y_5272_5341_m GGCAAAAUGGCUGAGAGU-AGGCAUUAGACUGUAAAUCUAAGAAC.AGAAGUAGu..aaAGCUUCUUUUUGUCA NC_009056_Y_5265_5332_m GGUAAGAUGGCUGAGAAU-AGGCAUUAGACUGUAAAUCUAAAGAC.AGGGAUAG....uACUCCCUUUUUACCA NC_005314_Y_5281_5348_m GGUAAAAUGGCUGAGUG--AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUUu...aGCCCUCUUUUUACCA NC_001892_Y_5259_5324_m GGUAGGAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAUAC.AGAGGGUG....aCCCCUCUUCCUAUCA NC_013571_Y_5240_5306_m GGUAAAAUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAGCAC.AGAGGAUA....aGGCCUCUUUUUACCA NC_003041_Y_5232_5298_m GGUAAAAUGGCUGAGCA--AAGCAUUAGACUGUAAAUCUAAGCAC.AGAGGAUA....aAGCCUCUUUUUACCA NC_008064_Y_5234_5300_m GGUAAAAUGGCUGAGUA--GAGCAUUAGACUGUAAAUCUAAGCAC.AGAGGUUA....aGCCCUCUUUUUACCA NC_013563_Y_5234_5300_m GGUAAAAUGGCUGAGUA--GAGCAUUAGACUGUAAAUCUAAGCAC.AGAGGAUA....aAGCCUCUUUUUACCA NC_007936_Y_5242_5308_m GGUAAAAUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUAu...aGUCCUCUUUUUAUC- NC_013276_Y_5241_5308_m GGUAGAAUGGCUGAGCA--UAGCAUUAGACUGUAAAUCUAAGCAC.AGAGGUUAu...aACCCUCUUUUUACCA NC_013068_Y_16421_16487_m GGUAAAAUGGCUGAGUA--GAGCAUUAGACUGUAAAUCUAAGGAC.AGAGGUUUu...aGUCCUCUUUUUACC- NC_005089_Y_5260_5326_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAACAC.AGAGGUUUa...aAUCCUCUUUUUACCA NC_012387_Y_5261_5327_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAACAC.AGAGGUUUa...aAUCCUCUUUUUACCA NC_006914_Y_5260_5326_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAACAC.AGAGGUUUa...aAUCCUCUUUUUACCA NC_006915_Y_5262_5328_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAACAC.AGAGGUUUa...aAUCCUCUUUUUACCA NC_010339_Y_5262_5328_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAGACAC.AGAGGUUUa...aAUCCUCUUUUUACCA NC_010650_Y_5258_5324_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAACAC.AGAGGUUUa...aGUCCUCUUUUUACCA NC_012389_Y_5251_5316_m GGUAAAAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGGGGUUG....aGCCCCCUUUUUACCA NC_001665_Y_5256_5321_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUUG....aGCCCCCUUUUUACCA NC_012461_Y_5253_5318_m GGUAAGAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUUA....aAUCCCCUUCUUACCA NC_012374_Y_5249_5314_m GGUAAAAUGGUCGAGU---AGACAUUAGACUGUAAAUCUAAAGAC.AGGGGUUG....aAUCCUCUUUUUACCA NC_011638_Y_5246_5311_m GGUAAAAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUUG....aAUCCCCUUUUUACCA NC_005315_Y_5261_5324_m GGUAAGAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGGGA--A....aGUACCCUUCUUACCA NC_002369_Y_5277_5343_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAUAC.AGAGGUUGa...aGUCCUCUUUUUACCA NC_007009_Y_5250_5314_m GGUAAAAUGGCUGAGU---AAGCAUUGGGCUGUAAACCUGAAGAC.AGAGGUCU....gACCCUCUUUUUGCC- NC_009747_Y_5247_5311_m GGUAAAAUGGCUGAGU---AAGCAUUGGGCUGUAAACCUGAAGAC.AGAGGUCU....gACCCUCUUUUUGCC- NC_008066_Y_5822_5886_m GGUAAAAUGGCUGAGU---AAGCAUUAGGCUGUAAACCUGAAGAC.AGAGGUCU....gAUCCUCUUUUUGCC- NC_009748_Y_5244_5308_m GGUAAAAUGGCUGAGU---AAGCAUUGGGCUGUAAACCUGAAGAC.AGAGGUCU....gACCCUCUUUUUGCC- NC_005943_Y_5781_5845_m GGUAAAAUGGCUGAGU---AAGUAUUAGGCUGUAAACCUAAAGAC.GGGGGUUU....aGUCCCCCUUUUACC- NC_002764_Y_5246_5310_m GGUAAAAUGGCUGAAU---AAGCAUUAGGCUGUAAACCUAAAGAU.GGGGGUCU....aGUCCCCCUUUUAUC- NC_001992_Y_5258_5322_m GGUAAAAUGGCUGAGU---AGGCAUUAGGCUGUAAACCUAAAGAC.AGAGGUCU....aACCCUCUUUUUACC- NC_006901_Y_5258_5322_m GGUAGAAUGGCUGAGU---UAGCAUUAGGCUGUAAACCUAAAGAC.AGGGGUUA....aGUCCUCUUUUUACC- NC_008216_Y_5254_5318_m GGUAAAAUGGCUGAGU---AGGCAUUAGGCUGUAAACCUAAGGAC.AGAGGUUU....aGUCCUCUUUUUACC- NC_008219_Y_5251_5315_m GGUAAAAUGGCUGAGU---AAGCAUUAGGCUGUAAAUCUAAGGAC.AGAGGUUA....aGUCCUCUUUUUACC- NC_008217_Y_5246_5310_m GGUAAAAUGGCUGAGU---AAGCAUUAGGCUGUAAACCUAAGAAC.AGAGGUUA....aGCCCUCUUUUUGCC- NC_008220_Y_5244_5308_m GGUAAAAUGGCUGAGU---AGGCAUUGGGCUGUAAACCUAAGUAC.AGAGGUUG....aACCCUCUUUUUACC- NC_008218_Y_5257_5321_m GGUAAAAUGGCUGAGU---AGGCAUUAGGCUGUAAACCUAAGGAC.AGAGGUUA....aGCCCUCUUUUUAUC- NC_008215_Y_5247_5311_m GGUAAAAUGGCUGAGU---AAGCAUUAGGCUGUAAACCUAAGGAC.AGAGGUUA....aGUCCUCUUUUUACC- NC_006900_Y_5252_5317_m GGUAAAAUGGCUGAGU---AAGCAUUAGGCUGUAAAUCUAAGGAC.AGAGGUUUa...aGCCCUCUUUUUACC- NC_001645_Y_5245_5309_m GGUAAAAUGGCUGAGUA--AGGCAUUGGACUGUAAAUCUAAAGAC.AGAGGCUG.....GGCCUCUUUUUACC- NC_011120_Y_5246_5310_m GGUAAAAUGGCUGAGUA--AGGCAUUGGACUGUAAAUCUAAAGAC.AGAGGCUG.....GGCCUCUUUUUACC- NC_012920_Y_5827_5891_m GGUAAAAUGGCUGAGUG--AAGCAUUGGACUGUAAAUCUAAAGAC.AGGGGUUA.....GGCCUCUUUUUACC- NC_011137_Y_5822_5886_m GGUAAAAUGGCUGAGUG--AAGCAUUGGACUGUAAAUCUAAAGAC.AGGGGUUA.....AGCCUCUUUUUACC- NC_001644_Y_5247_5311_m GGUAAAAUGGCUGAGUG--AAGCAUUGGACUGUAAAUCUAAAGAC.AGGGGUUA.....AGCCUCUUUUUACC- NC_001643_Y_5245_5309_m GGUAAAAUGGCUGAGUG--AAGCAUUGGACUGUAAAUCUAAAGAC.AGGGGUUA.....AGCCUCUUUUUACC- NC_002083_Y_5250_5315_m GGUAAAAUGGCCGAGUUA-AGGCAUUAGGCUGUAAAUCUAAGAAC.AGGGGUUA.....GACCUCUUUUUACC- NC_001646_Y_5248_5313_m GGUAAAAUGGCCGAGUUA-AGGCAUUAGGCUGUAAAUCUAAGAAC.AGGGGUCA.....GACCUCUUUUUACC- NC_002082_Y_5246_5310_m GGUAAAAUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAGGAC.AGAGGUGG.....AACCUCUUUUUGCC- NC_002763_Y_5254_5320_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGA--AgugacCCCCUCUUUUUACC- NC_012775_Y_5243_5308_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGG--Agu.aaCCCCUCUUUUUACC- NC_002811_Y_5275_5340_m GGUAAAAUGGCUGAAA---GAGCAUUAGGCUGUAAAUCUAAAAAU.AGGGGUGU....aGUCCCCUUUUUACCA NC_012774_Y_5295_5360_m GGUAGAAUGGCUGAUA---AAGCAUUAGGCUGUAAAUCUAAAGAU.AGGGGUGA....aGCCCCCUUUUUACCA NC_010299_Y_5282_5347_m GGUAAAAUGGCUGAGU---AAGUAUUAGACUGUAAAUCUAAAGAC.GAAGGUUG....aAUCCUUCUUUUGCCA NC_012763_Y_5304_5371_m GGUAAAAUGGCUGAGUAA-AAGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUUG....aAUCUCCUUUUUACCA NC_002765_Y_5300_5366_m GGUAAAAUGGCUGAGUA--GAGCAUUGGACUGUAAAUCCAAAAAU.AGGGGUCA....aAUCCCCUUUUUACCA NC_012764_Y_5285_5351_m GGUAAGAUGGCUGAGUA--GAGCAUUAGACUGUAAAUCUAAGUAC.AGAGGUUA....aGUCCUCUUUUUACCA NC_011053_Y_5277_5342_m GGUAAAAUGGCUGAGAUAGAGGCAUUGGACUGUAAAUCUAAAGAC.AGAGGUA-.....ACCCUCUUUUUACC- NC_012766_Y_5276_5341_m GAUAGAAUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUGG.....CUCCUCUUUCUAUCA NC_012769_Y_5276_5341_m GAUAGAAUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUGG.....CUCCUCUUUCUAUCA NC_012771_Y_5273_5339_m GAUAGAAUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUGG....uCCCCUCUUUCUAUCA NC_010300_Y_5276_5342_m GAUAGAAUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAGGAC.AGAGGUGG....cCUCCUCUUUCUAUCA NC_004025_Y_5268_5334_m GAUAGAAUGGCUGAGUU--AGGCAUUAGACUGUAAAUCUAAGAAC.AGAGGAAA....cCCCCUCUUUCUAUCA NC_012773_Y_5286_5351_m GAUAGGAUGGCUGAGUU--AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGGGA.....CGCCUCUUUCUAUCA NC_012761_Y_5290_5356_m GGUAAAAUGGCUGAGUC--AAGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUUU....aGUCCUCUUUUUACCA NC_012762_Y_5289_5355_m GGUAAGAUGGCUGAGUA--GAGCAUUAGACUGUAAAUCUAAAAAC.AGAGGUCA....aGUCCUCUUUUUACCA NC_002521_Y_5250_5315_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUA....aGCCCUCUUUUUACCA NC_011124_Y_5282_5348_m GGUAAAAUGGCUGAUAA--AAGCAAUAGACUGUAAAUCUAAGAAU.AGAGGAUA....aGUCCUCUUUUUACCA NC_009691_Y_5284_5350_m GGUAAAAUGGCUGAUAA--AAGCAAUAGACUGUAAAUCUAAGAAU.AGAGGAUA....aGUCCUCUUUUUACCA NC_008093_Y_5281_5348_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAAGAU.AGGGGUUUa...aGUCCUCUUUUUACCA NC_008092_Y_5281_5348_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAAGAU.AGGGGUUUa...aGUCCUCUUUUUGCCA NC_010340_Y_5280_5347_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAAGAU.AGAGGUUUg...aGUCCUCUUUUUGCCA NC_002008_Y_5280_5347_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAAGAU.AGGGGUUUa...aGUCCUCUUUUUGCCA NC_011218_Y_5282_5349_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAAGAU.AGAGGUUUg...aGUCCUCUUUUUGCCA NC_009686_Y_5281_5348_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAAGAU.AGGGGUUUa...aGUCCUCUUUUUGCCA NC_013445_Y_5280_5346_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAAAAU.AGAGGUUA....aGUCCUCUUUUUACCA NC_013700_Y_5278_5345_m GGUAGAAUGGCUGAUAU--AAGCAUUAGACUGUAAAUCUAAAGAU.AGAGGUUCu...aGUCCUCUUUUUACCA NC_008434_Y_5281_5348_m GGUAAAAUGGCUGAUAA--AAGCGUUAGACUGUAAAUCUAAAGAU.AGGGGUGUa...aGUCCUCUUUUUACCA NC_010497_Y_5279_5345_m GGUAAAAUGGCUGAUAA--AAGCAGUAGACUGUAAAUCUAAGAAU.AAAGGUUA....aGUCCUUUUUUUACCA NC_009692_Y_5275_5342_m GGUAAGAUGGCUGAUAA--GAGCAUUAGACUGUAAAUCUAAGAAU.AGGGGUUUa...aGUCCCCUUUUUGCCA NC_011358_Y_5275_5342_m GGUAAAAUGGCUGACAA--GAGCAUUAGACUGUAAAUCUAAGAAU.AGGGGUUUa...aGCCCCCUUUUUGCCA NC_012141_Y_5275_5342_m GGUAAAAUGGCUGAUAA--GGGCAUUAGACUGUAAAUCUAAGAAU.AGGGGUUUa...aGUCCCCUUUUUGCCA NC_009678_Y_5272_5339_m GGUAAAAUGGCUGAUAA--GGGCAUUAGACUGUAAAUCUAAGAAU.AGGGGUUUa...aGCCCCCUUUUUGCCA NC_011579_Y_5271_5338_m GGUAAAAUGGCUGAUAA--GGGCAUUAGACUGUAAAUCUAAGAAU.AGGGGUUUa...aGUCCCCUUUUUGCCA NC_009677_Y_5271_5337_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAGAAU.AGGGGUUU....aGUCCCCUUUUUGCCA NC_011125_Y_5274_5340_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAGAAU.AGGGGUUU....aGCCCCCUUUUUGCCA NC_004029_Y_5281_5348_m GGUAAAAUGGCUGACGA--UAGCAUUAGACUGUAAAUCUAAGAAC.GGAGGUUAc...aGCCCUCCUUUUACCA NC_008417_Y_5286_5353_m GGUAAAGUGGCUGACAA--UAGCAUUAGACUGUAAAUCUAAGAAU.GAAGGUUUa...aGCCCUUCUUUUGCCA NC_008420_Y_5291_5358_m GGUAAAGUGGCUGAUAA--UAGCAUUAGACUGUAAAUCUAAGAAU.GAAGGUUUa...aGCCCUUCUUUUGCCA NC_008415_Y_5283_5350_m GGUAAAGUGGCUGAUAA--UAGCAUUAGACUGUAAAUCUAAGAAU.GAAGGUUUa...aGCCCUUCCUUUGCCA NC_004030_Y_5286_5353_m GGUAAAGUGGCUGAUAA--UAGCAUUAGACUGUAAAUCUAAGAAU.GAAGGUUCg...aGCCCUUCUUUUGCCA NC_008419_Y_5291_5358_m GGUAAAGUGGCUGAUAA--UAGCAUUAGACUGUAAAUCUAAGAAU.GGAGGUCUa...aGUCCUUCUUUUACCA NC_008418_Y_5286_5353_m GGUAAAGUGGCUGAUAA--UAGCAUUAGACUGUAAAUCUAAGAAU.GAAGGUUUa...aGUCCUUCUUUUGCCA NC_008416_Y_5289_5356_m GGUAAUGUGGCUGAUAA--UAGCAUUAGACUGUAAAUCUAAUAAU.GAAGGUUUa...aGUCCUUCUUUUGCCA NC_008427_Y_5274_5341_m GGUAAAAUGGCUGAUAA--AAGCAUUAGGCUGUAAAUCUAAUUAU.GGGGGUCUg...aGUCUCCCUUUUACCA NC_008426_Y_5278_5345_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAUUAU.GGAGGUCUg...aGUCCUUCUUUUACCA NC_001602_Y_6180_6247_m GGUAAAAUGGCUGAUAG--AAGCAUUAGACUGUAAAUCUAACUAU.GGGGGUCUg...aGUCCCCCUUUUACCA NC_008425_Y_5282_5349_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAUUAU.GAGGGUUUa...gGUCCUUCUUUUACCA NC_008424_Y_5282_5349_m GGUAAAAUGGCCGAUAA--AAGCAUUAGACUGUAAAUCUAAUUAU.GAGGGUUCa...aGUCCUUCUUUUACCA NC_008423_Y_5284_5350_m GGUAAAAUGGCCGAUAA--AAGCAUUAGACUGUAAAUCUAAUUAU.GAGGGUUA....aGUCCUUCUUUUACCA NC_008422_Y_5283_5351_m GGUAAGAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAUUAU.GGAGGUCUc..uaGUCCUUCUUUUACCA NC_008421_Y_5288_5355_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAGUAU.GAAGGCCUa...gGCCCUUCUUUUACCA NC_008428_Y_5274_5341_m GGUAAAAUGGCUGAUAA--GAGCAUUAGACUGUAAAUCUAACCAU.GGGGGUUUg...aGUCUCCCUUUUGCCA NC_008429_Y_5272_5339_m GGUAAAAUGGCUGAUAA--GAGCAUUAGACUGUAAAUCUAACUAU.GGGAGUUUg...aGUCUCCCUUUUAUCA NC_008430_Y_5273_5340_m GGUAAAAUGGCUGAUAA--GAGCGUUAGACUGUAAAUCUAACUAU.GGGGGUUUg...aGUCUCCCUUUUACCA NC_001325_Y_6206_6273_m GGUAAAAUGGCUGAUAA--GAGCAUUAGACUGUAAAUCUAAUUAU.GGGGGUUUg...aGUCUCCCUUUUACCA NC_008431_Y_5275_5342_m GGUAAAAUGGCUGAUAA--GAGCAUUAGACUGUAAAUCUAACUAU.GGGGGUUUg...aGUCUCCCUUUUACCA NC_008433_Y_5272_5339_m GGUAAAAUGGCUGAUAA--GAGCAUUAGACUGUAAAUCUAACUAU.GGGGGUUUg...aGUCUCCCUUUUACCA NC_008432_Y_5275_5342_m GGUAAAAUGGCUGAUAA--GAGCAUUAGACUGUAAAUCUAACUAU.GGGGGUUUg...aGUCUCCCUUUUACCA NC_009126_Y_7730_7796_m GGUAAAGUGGCUGAUAA--AAGCAAUAGACUGUAAAUCUAAGAAU.AGGGGUUG....aGUCCUCUUUUUACCA NC_009492_Y_6640_6706_m GGUAAAAUGGCUGAUAA--AAGCACUAGACUGUAAAUCUAAGAAU.GGGGGUUA....aGUCCUCUUUUUACCA NC_011116_Y_6137_6202_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUGAGUAU.GGGGGUCA.....AGUCCUCUUUUGCCA NC_009968_Y_6165_6231_m GGUAAAAUGGCUGAUAA--AAGCACUAGACUGUAAAUCUAAGAAU.AGAGGUUA....aGUCCCCUUUUUGCCA NC_009970_Y_6197_6262_m GGUAAAAUGGCUGAUAA--AAGCACUAGACUGUAAAUCUAAGAAU.GGGGGUUA.....AGUCCCCUUUUGCCA NC_009969_Y_6142_6207_m GGUAAAAUGGCUGAUAA--AAGCAUUAGACUGUAAAUCUAAAUAU.GGGGGUUA.....AGUCCUCUUUUACCA NC_003426_Y_6223_6289_m GGUAAAAUGGCUGAUAA--AAGCACUAGACUGUAAAUCUAAGAAU.AGAGGUUG....aGUCCCCUUUUUGCCA NC_003427_Y_6417_6482_m GGUAAAAUGGCUGAUAA--AAGCACUAGACUGUAAAUCUAAGAAU.AGAGGUAA.....GUCCUCUUUUUGCCA NC_003428_Y_6412_6477_m GGUAAAAUGGCUGAUAA--AAGCGCUAGACUGUAAAUCUAAGAAU.AGAGGCAA.....GUCCUCUUUUUGCCA NC_011112_Y_6159_6225_m GGUAAAAUGGCUGAUAA--AAGUAUUAGACUGUAAAUCUAAGAAU.AGAGGUUA....aGUCCUCUUUUUGCCA NC_009971_Y_6175_6241_m GGUAAAAUGGCUGAUAA--AAGCACUAGACUGUAAAUCUAAGAAU.AGAGGUUG....aGUCCCCUUUUUGCCA NC_009331_Y_6880_6946_m GGUAAAAUGGCUGAUAA--AAGCACUAGACUGUAAAUCUAAGAAU.AGAGGUUG....aGUCCCCUUUUUGCCA NC_008753_Y_6249_6315_m GGUAAAAUGGCUGAUAA--AAGCACUAGACUGUAAAUCUAAGAAU.AGAGGUUG....aGUCCCCUUUUUGCCA NC_011118_Y_6870_6936_m GGUAAAAUGGCUGAUAA--AAGCACUAGACUGUAAAUCUAAGAAU.AGAGGUUG....aGUCCCCUUUUUGCCA NC_011117_Y_16757_16823_m GGUAAAAUGGCUGAUAA--AAGCACUAGACUGUAAAUCUAAGAAU.AGAGGUUG....aGUCCCCUUUUUGCCA NC_005212_Y_6172_6238_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAGCAC.AGAGGUUUa...aGCCCUCUUUUUACCA NC_001700_Y_6148_6214_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUCg...aGCCCUCUUUUUACCA NC_008450_Y_6176_6242_m GGUAAAAUGGCUGAGC---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUUu...aACCCUCUUUUUACCA NC_010641_Y_6238_6303_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUC....aGUCCUCUUUUUACCA NC_010638_Y_6033_6097_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGACaGAGG-UUU....aGU-CCUCUUUUACCA NC_006835_Y_5280_5346_m GGUAAAAUGGCUGAGC---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUUg...aACCCUCUUUUUGCCA NC_005268_Y_5300_5365_m GGUAAAAUGGUCGAGU---AGGCAUUAGGCUGUAAAUCUAAAGAC.AGAGGUUG....aGUCCUCUUUUUACCA NC_006930_Y_5291_5357_m GGUAAAAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUGa...aGUCCUCUUUUUACCA NC_006931_Y_5293_5359_m GGUAAAAUGGUCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUGa...aGUCCUCUUUUUACCA NC_005271_Y_5305_5370_m GGUAAAAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGAGGUUA....aGUCCUCUUUUUACCA NC_006926_Y_5303_5368_m GGUAAAAUGGCUGAGU---AAGUAUUAGACUGUAAAUCUAAAGAC.AGAGGUUG....aGUCCUCUUUUUACCA NC_006929_Y_5301_5366_m GGUAAAAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGAGGUUG....aGUCCUCUUUUUACCA NC_006928_Y_5300_5365_m GGUAAAAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUG....aGUCCUCUUUUUGCCA NC_007938_Y_5299_5364_m GGUAAAAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUG....aGUCCUCUUUUUACCA NC_001601_Y_5712_5777_m GGUAAAAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGAGGUUG....aGUCCUCUUUUUACCA NC_007937_Y_5295_5360_m GGUAAAAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGAGGUUG....aGUCCUCUUUUUACCA NC_001321_Y_5715_5780_m GGUAAAAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGAGGUUG....aGUCCUCUUUUUACCA NC_006927_Y_5308_5373_m GGUAAAAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGAGGUUG....aGUCCUCUUUUUACCA NC_005270_Y_5304_5369_m GGUAAGAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGAGGUUG....aGUCCUCUUUUUACCA NC_005269_Y_5293_5358_m GGUAAAAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGAGGUUG....aGUCCUCUUUUUACCA NC_012061_Y_5295_5360_m GGUAAAAUGGUCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUAA....aGUCCUCUUUUUACCA NC_012062_Y_5297_5362_m GGUAAAAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGGGGUGA....aGUCCUCUUUUUACCA NC_005278_Y_5298_5364_m GGUAAAAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUAAg...aGUCCUCUUUUUACCA NC_012057_Y_5296_5363_m GGUAAAAUGGUCGAGU---AGACAUUAGACUGUAAAUCUAAAGAC.AGAGGUAAa..aaAUCCUCUUUUUAUCA NC_012051_Y_5296_5361_m GGUAAAAUGGUCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUAG....aGUCCUCUUUUUACCA NC_012053_Y_5296_5361_m GGUAAAAUGGUCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUAA....aGUCCUCUUUUUACCA NC_012058_Y_5296_5361_m GGUAAAAUGGUCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUAA....aGUCCUCUUUUUACCA NC_012059_Y_5296_5361_m GGUAAAAUGGUCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUAA....aGUCCUCUUUUUACCA NC_005276_Y_5300_5366_m GGUAAAAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAGGAC.AGGGGUAGa...aACCCCCUUUUUGCCA NC_007629_Y_5299_5364_m GGUAAAAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGGGGUAA....aAUCCUCUUUUUGCCA NC_005279_Y_5297_5362_m GGUAAAAUGGCUGAGU---AGGCAUUAGACUGUAAAUCUAAAACC.AGGGGUAA....aGUCCUCUUUUUACCA NC_005280_Y_5299_5365_m GGUAAAAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.GGGGGUAAa...aGUCCCCCUUUUACUA NC_005272_Y_5295_5360_m GGUAAAAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGAGGUUA....aGCCCUCUUUUUGCCA NC_002503_Y_5302_5367_m GGUAAGAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUUA....aGUCCUCUUUUUACCA NC_005275_Y_5294_5359_m GGUAAAAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUAA....aACCCUCUUUUUGCCA NC_005277_Y_5301_5366_m GGUAAAAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUGA....aGUCCUCUUUUUGCCA NC_005274_Y_5293_5358_m GGUAAAAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUGA....aGUCCUCUUUUUGCCA NC_005273_Y_5298_5363_m GGUAAAAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUGG....aGUCCUCUUUUUGCCA NC_000889_Y_5272_5337_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAGUAC.AGGGGUUG....aGUCCUCUUUUUGCCA NC_012098_Y_5258_5325_m GGUAAAAUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAGAAC.AAAGGUUUa...aUUCCUCUUUUUACCA NC_007441_Y_5257_5324_m GGUAAAAUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAGAAC.AGGGGUUUg...aUUCCUCUUUUUACCA NC_012346_Y_5617_5684_m GGUAAAAUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAAGAU.AGAGGUUUg...aCUCCUCUUUUUACCA NC_006380_Y_6151_6218_m GGUAAAAUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAAGAU.AGAGGUUUg...aCCCCUCUUUUUACCA NC_005971_Y_5621_5688_m GGUAAAAUGGCUGAGCA--AAGCAUUAGACUGUAAAUCUAAAGAU.AGAGGUUUg...aCUCCUCUUUUUACCA NC_012706_Y_5619_5686_m GGUAAAAUGGCUGAGCA--AAGCAUUAGACUGUAAAUCUAAAGAU.AGAGGUUUg...aCUCCUCUUUUUACCA NC_006853_Y_5618_5685_m GGUAAAAUGGCUGAGCA--AAGCAUUAGACUGUAAAUCUAAAGAU.AGAGGUUUg...aCUCCUCUUUUUACCA NC_006295_Y_5633_5699_m GGUAAAAUGGCUGAGU---GAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUUg...aGUCCUCUUUUUACCA NC_013069_Y_5260_5327_m GGUAAAAUGGCUGAGUA--AAGCAAUAGACUGUAAAUCUAAGAAU.AGAGGUUUg...aUUCCUCUUUUUACCA NC_005044_Y_5259_5326_m GGUAAAAUGGCUGAGCA--AAGCAAUAGACUGUAAAUCUAAGAAC.AGAGGUUUg...aUUCCUCUUUUUACCA NC_012096_Y_5259_5326_m GGUAAAAUGGCUGAGUA--AAGCAAUAGACUGUAAAUCUAAGAAC.GGAGGUUUa...aUUCCUCUUUUUACCA NC_013751_Y_5245_5312_m GGUAAAAUGGCUGAGCA--AAGCAAUAGACUGUAAAUCUAAGAAC.GGAGGUUUa...aUUCCUCUUUUUACCA NC_010640_Y_5257_5324_m GGUAAAAUGGCUGAGUA--AAGCAAUAGACUGUAAAUUUAAGAAC.GGAGGUUUa...aUUCCUUUUUUUACCA NC_001941_Y_5263_5330_m GGUAAAAUGGCUGAGUA--AAGCAAUAGACUGUAAAUCUAAGAAC.AGAGGUUUa...aUUCCUCUUUUUACCA NC_007704_Y_5279_5348_m GGUAGAAUGGCUGAGUUG-AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUUg..uaUUCCUCUUUUUACCA NC_006993_Y_5259_5327_m GGUAGAAUGGCUGAGUG--AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUUa..uaCUCCUCUUUCUACCA NC_008462_Y_5267_5335_m GGUAGAAUGGCUGAGUG--AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUUa..uaUCCCUCUUUUUACCA NC_007179_Y_5268_5336_m GGUAGAAUGGCUGAGUG--AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUUa..uaCUCCUCUUUUUACCA NC_006973_Y_5261_5329_m GGUAGAAUGGCUGAGUG--AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUUa..uaCUCCUCUUUCUAUCA NC_008414_Y_5269_5337_m GGUAAAAUGGCUGAGUG--AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUUa..uaCUCCUCUUUUUACCA NC_011821_Y_5255_5323_m GGUAAAAUGGCUGAGUG--AAGCAUUAGACUGUAAAUCUAAGGAC.AGAGGUUUg..uaCUCCUCUUUUUACCA NC_008749_Y_5255_5323_m GGUAAAAUGGCUGAGUG--AAGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUUUa..uaAUCCUCUUUUUACCA NC_004069_Y_5260_5328_m GGUAAGAUGGCUGAGUG--AAGCAUUAGACUGUAAAUCUAAAGAU.AGAGGUUUa..uaAUCCUCUUUUUACCA NC_008491_Y_5261_5329_m GGUAAGAUGGCUGAGUG--AAGCAUUAGACUGUAAAUCUAAAGAU.AGAGGUUUa..uaAUCCUCUUUUUACCA NC_007703_Y_5258_5326_m GGUAAAAUGGCUGAGCA--AAGCAUUAAACUGUAAAUCUAAAGAU.AGAGGUUUg..uaAUCCUCUUUUUACCA NC_012100_Y_5259_5326_m GGUAGAGUGGCUGAGUA--AAGCAUUAGACUGUAAAUCUAAGGAC.AGAGGUUUg...aUUCCUCUCUUUAUCA NC_012694_Y_5257_5324_m GGUAGAAUGGCUGAGUG--AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUGa...aUUCCUCUUUUUACCA NC_013753_Y_5257_5324_m GGUAGAAUGGCUGAGUG--AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUGa...aUCCCUCUUUUUACCA NC_008830_Y_6551_6616_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUG....aGCCCUCUUUUUGCCA NC_000845_Y_6445_6509_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUA....aGCCCUCUUUUUGCC- NC_012095_Y_5269_5333_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUA....aGCCCUCUUUUUGCC- NC_012103_Y_5267_5333_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.GGAGGUCCa...aGUCCUCUUUUUGCCA NC_009628_Y_5267_5333_m GGUAAGAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUGAg...aGCCCUCUUCUUACCA NC_009849_Y_5265_5331_m GGUAAGAUGGCCGAGU---AGGCAUUGGACUGUAAAUCUAAAGAC.AGAGGUGAg...aGCCCUCUUCUUACCA NC_009629_Y_5266_5332_m GGUAAGAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUGAg...aGCCCUCUUUUUACCA NC_012102_Y_5268_5334_m GGUAAGAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUGAc...aACCCUCUUCUUAUCA NC_011822_Y_5268_5334_m GGUAAGAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUGAc...aACCCUCUUCUUAUCA NC_002504_Y_5258_5324_m GGUAAGAUGGCCGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUGAc...aACCCUCUUCUUAUCA NC_013558_Y_5268_5334_m GGUAAGAUGGCCGAGC---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUGAc...aGUCCUCUUCUUAUCA NC_002612_Y_5279_5345_m GGUAAGAUGGCUGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUGCa...aGUCCUCUUUUUACCA NC_002619_Y_5281_5347_m GGUAAAAUGGCUGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUCUa...aGUCCCCUUUUUACCA NC_007393_Y_5276_5345_m GGUAAAAUGGCUGAGUAGUAGGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUGUa...aGGCCUCUUUUUACCA NC_006925_Y_5274_5340_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUUa...aGCCCUCUUUUUACCA NC_002009_Y_5263_5328_m GGUAAUAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAGUAC.AGAGGUUA....aGUCCUCUUAUUACCA NC_011304_Y_5279_5345_m GGUAAAAUGGCCGAGU---AGGCAUUAGGCUGUAAAUCUAAGCAC.AGGGGUCGu...aUUCCCCUUUUUACCA NC_005433_Y_5279_5345_m GGUAAAAUGGCCGAGU---AGGCAUUAGGCUGUAAAUCUAAGCAC.AGGGGUUUg...aGUCCCCUUUUUACCA NC_005434_Y_5280_5346_m GGUAAAAUGGCCGAGU---AGGCAUUAGGCUGUAAAUCUAAGCAC.AGGGGUUUg...aGUCCCCUUUUUACCA NC_002626_Y_5257_5323_m GGUAAAAUGGCCGAGU---AGGUAUUAGACUGUAAAUCUAAAGAC.AGAGG--Agc.aaGACCUCUUUUUACCA NC_005436_Y_5262_5329_m GGUAAAAUGGCCGAGC---AGGUAUUAGACUGUAAAUCUAAAUAC.AGAGGUAGa..gaAUCCUCUUUUUACCA NC_002080_Y_5275_5344_m GGUAAAAUGGCCGAGAUAUAGGUAUUAGACUGUAAAUCUAAACAC.AGAAGGAUa...gACCUUCUUUUUACCA NC_005033_Y_5298_5365_m GGUAAAAUGACUGAGAUAUAAGUGUUAGACUGUAAAUCUAAAGAC.AGAGAAUA.....GGCCUCUUUUUACCA NC_002808_Y_5281_5349_m GGUAAAAUGGCUGAGAAU-AAGCAUUAGACUGUAAAUCUAAGCAC.AGAGGUAAu...aCCCCUCUUUUUACCA NC_006893_Y_5278_5344_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AAAGGUGUa...aAUCCUUUUUUUACCA NC_003040_Y_5305_5372_m GGUAAAAUGGCUGAGGUU-AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGGUG....aUUCCUCUUUUUACCA NC_005435_Y_5279_5345_m GGUAAAAUGGCUGAGGAU-AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUAA.....UACCUCUUUUUACCA NC_008156_Y_5304_5370_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAUAC.AGAGGUUUa...aGUCCUCUUUUUACCA NC_005035_Y_5305_5371_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUUa...aGUCCUCUUUUUACCA NC_002391_Y_5288_5354_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUUUa...aAUCCUCUUUUUACCA NC_005034_Y_5299_5365_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUUg...aGUCCUCUUUUUACCA NC_001788_Y_5289_5355_m GGUAAGAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUUGg...aAUCCUCUUCUUAUCA NC_001640_Y_5294_5360_m GGUAAGAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUUGg...aAUCCUCUUCUUAUCA NC_001808_Y_5282_5348_m GGUAAAAUGGCUGAGA---UAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUGu...aGCCCUCUUUUUACCA NC_012681_Y_5286_5352_m GGUAAAAUGGCUGAGA---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUAu...aACCCUCUUUUUGCCA NC_012684_Y_5286_5352_m GGUAAAAUGGCUGAGA---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUGu...aGCCCUCUUUUUACCA NC_012682_Y_5283_5349_m GGUAAAAUGGCUGAGA---UAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUGu...aGCCCUCUUUUUGCCA NC_012683_Y_5283_5349_m GGUAAAGUGGCUGAGA---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUCGu...aACCCUCUUUUUGCCA NC_001779_Y_5283_5349_m GGUAAAGUGGCUGAGA---AAGCAUUAGACUGUAAAUCUAAAGAC.AGAGGUUGc...aGCCCUCUCUUUACCA NC_004027_Y_5240_5306_m GGUAGGGUGGCUGAAU---AAGCAUUAGACUGUAAAUCUAAAGAU.GGAGGUGUa...aGUCCUCUUCUUACCA NC_006923_Y_5294_5358_m GGUAAAAUGGCUGAGG---AAGCAUUAGACUGUAAAUCUAAGGAC.AGGGGUGA.....GGCCCCUUUUUGCCA NC_001821_Y_5282_5347_m GGUAAAAUGGCUGAGU---AAGCAUUAGACUGUAAAUCUAAAGAC.AAAGGUGA....aGUCCUUUUUUUACCA NC_006924_Y_5285_5351_m GGUAAAAUGGCCGAGG---AAGCAUUAGACUGUAAAUCUAAAGAC.AGGGGUGAg...aGACCCCUUUUUGCCA NC_004032_Y_5258_5326_m GGUAAAAUGGCUGAGUUG-AGGCAUUAGACUGUAAAUCUAAACAC.AGAGGCAUg...gCGUCUCUUUUUACCA NC_007630_Y_5314_5379_m GGUAAAAUGGCUGAGGAU-AAGCGUUGAACUGUAAAUUCAAAGAC.AGAGAUG-.....AAUCUCUUUUUACCA NC_006523_Y_5300_5368_m GGUAAAAUGGCUGAGGUA-AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGAUUAa...uAGUCUCUUUUUACCA NC_007631_Y_5327_5394_m GGUAAAAUGGCUGAGUAU-AAGCAUUGGACUGUAAAUCCAAAGAC.AGGGACUA....aCAUCUCUUUUUACCA NC_006517_Y_5314_5382_m GGUAAAAUGGCUGAGAAU-AAGCAUUGGACUGUAAAUCCAAAGAC.AGAGAUUAg...aUACCUCUUUUUACCA NC_011949_Y_5484_5550_m GGUAGAAUGGCUGAGCAU-AAGCAUUGGACUGUAAAUCCAAAGAC.AGAGUUAA.....UACCUCUUUUUACCA NC_011944_Y_6239_6306_m GGUAAAAUGGCUGAGUU--AAGCAUUGGACUGUAAAUUCAAAGAC.AGAGGUUAa...uUGCCUCUUUUUACCA NC_001610_Y_5328_5395_m GGUAAAAUGGCUGAGGU--AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGAAUAa...uAAUCUCUUUUUACCA NC_006299_Y_5338_5404_m GGUAAAAUGGCUGAGCU--AGGCAUUGAACUGUAAAUUCAAAGAC.AGAGAAUA....aCAUCUCUUUUUACCA NC_008145_Y_5303_5370_m GGUAAAAUGGCUGAGGUA-AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGGCGA....gAAUCUCUUUUUACCA NC_008136_Y_5311_5378_m GGUAAAAUGGCUGAGGU--AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGAGUAa...uAAUCUCUUUUUACCA NC_008447_Y_5300_5367_m GGUAAAAUGGCUGAGGU--AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGAUUAa...gUAUCUCUUUUUACCA NC_001794_Y_5324_5391_m GGUAAAAUGGCUGAGGU--AAGCAUUGAACUGUAAAUUCAAGGAC.AGAGGCUAa...cAAUCUCUUUUUACCA NC_008134_Y_5314_5381_m GGUAAAAUGGCUGAGGU--AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGAUUAa...gUAUCUCUUUUUACCA NC_008135_Y_5321_5387_m GGUAAAAUGGCUGAGGU--AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGAUUA....aAAUCUCUUUUUACCA NC_003039_Y_5297_5364_m GGUAAAAUGGCUGAGGU--AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGACUAa...uAAUCUCUUUUUACCA NC_008133_Y_5312_5377_m GGUAAAAUGGCUGAGGU--AAGCAUUGAAUUGUAAAUUCAAAGAC.AGAGGUAU.....AAUCUCUUUUUACCA NC_006524_Y_5310_5377_m GGUAAAAUGGCUGAGGU--AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGACUAa...aUAUCUCUUUUUACCA NC_006518_Y_5298_5364_m GGUAAAAUGGCUGAGGU--AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGAUAA....uAGUCUCUUUUUACCA NC_003322_Y_5320_5387_m GGUAAAAUGGCCGAGUU--AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGACUAg...aUAUCUCUUUUUACCA NC_005828_Y_5301_5368_m GGUAAAAUGGCUGAGGAU-AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGAGUA....aGAUCUCUUUUUACCA NC_005829_Y_5307_5373_m GGUAAAAUGGCUGAGUAU-AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGAGUA.....GAUCUCUUUUUACCA NC_002746_Y_5306_5373_m GGUAAAAUGGCUGAGGU--AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGACUAg...uAAUCUCUUUUUACCA NC_007632_Y_5331_5399_m GGUAAAAUGGCUGAGGU--AAGCAUUGAACUGUAAAUUCAAAGAC.AGAGGAUAa..acAAUCUCUUUUUACCA NC_000891_Y_5321_5387_m GGUAAAAUGGCUGAGUUU-AAGCAUUAGACUGUAAAUCUAAAGAC.GGGGAAAA.....UGUCCCCUUUUACCA NC_003321_Y_5319_5382_m GGUAAUAUGGCUGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.GGGGA--G....cAAUCCCCUGUUACCA NC_006364_Y_5323_5386_m GGUAAUAUGGCUGAGU---AGGCAUUAGACUGUAAAUCUAAAGAC.GGGGA--G....cAAUCCCCUGUUACCA #=GC SS_cons (((((((,,<<<<______>>>>,<<<<<_______>>>>>,,,,.<<<<<___.....__>>>>>))))))): #=GC RF gguaggaUGGCugAauaaUaaGCGauagaUUGUAAAucuauuuAu.GggggUua.....auccccCuccuaccA #=GC SN 0000000..1111......1111.22222.......22222.....33333..........333330000000. #=GF CS 74 columns, 21 paired, 20 covariant; 4 stems //