# STOCKHOLM 1.0 ACTINOPTERYGII Y #=GF AU Infernal 1.0.1 #=GC CS 3333643..3232..........2323.34333.......33343.....34322..........223433463333. #=GC BP +++++++..+++k..........k+++.+++++.......+++++.....+++++..........++++++++++++. NC_005451_Y_5431_5501_m GGUAAGAUGGCUG..AGUAUU.uAAGCGGUGGGUUGUAGCCCCAU.GCACAGAGGUUAa...aGUCCCCUUCUUAUCA NC_012576_Y_5436_5506_m GGUAAGAUGGCUG..AGCGUU.uAAGCGGUGGGUUGUAGCCCCAU.GCACAGAGGUUAa...aGUCCCCUUCUUACCA NC_012646_Y_5440_5510_m GGUAAGAUGGCUG..AGCGUU.uAAGCGGUGGGUUGUAGCCCCAU.GCACAGAGGUUAa...aGUCCCCUUCUUACCA NC_005795_Y_5434_5504_m GGUAAGAUGGCUG..AGCGUU.uAAGCGGUGGGUUGUAGCCCCAU.GCACAGAGGUUAa...aGUCCCCUUCUUACCA NC_004743_Y_5432_5502_m GGUAAGAUGGCUG..AGUAUU.uAAGCGGUGGGUUGUAGCCCCAU.GCACAGAGGUUAa...aGUCCCCUUCUUAUCA NC_005252_Y_5485_5555_m GGUAAGAUGGCCG..AGCGUU.uAAGCGGUGGGUUGUAGCCCCAU.GUACAGAGGUUAa...aGUCCCCUUCUUAUCA NC_004420_Y_5433_5503_m GGUAAGAUGGCUG..AGUGUU.uAAGCGGUGGGUUGUAGCCCCAU.GUACAGAGGUUAa...aGUCCCCUUCUUAUCA NC_004419_Y_5428_5498_m GGUAAGAUGGCUG..AGUAUU.uAAGCGGUGGAUUGUAGCCCCAU.GCACAGAGGUUAa...aGUCCUCUUCUUACCA NC_005834_Y_5433_5503_m GGUAAGAUGGCUG..AGUGUU.cAAGCGGUGGGUUGUAGCCCCAU.GCACAGAGGUUAa...aGUCCUCUUCUUAUCA NC_004742_Y_5448_5518_m GGUAGUAUGGCUG..AAUAUA.uAGGCGGCGGGUUGUAGCUCCGC.GUACGAAGGUUCa...aUUCCUUCUGCUACCA NC_008131_Y_5429_5498_m GGUAGGAUGGCUG..AAUGUU.uAAGCGGCGGGUUGUAGCCCCGU.GGAUAGAGGUUUa...aUUCCUCUUCUUAUC- NC_004744_Y_5416_5485_m GGUAGGAUGGCUG..AAUGUA.uAAGCGGCGGAUUGUAGCUCCGU.ACACAGAGGUUUa...aUUCCUCUUCUUAUC- NC_008104_Y_5417_5486_m GGUAGGAUGGCUG..AAUGUA.uAAGCGGCGGGUUGUAGCUCCGU.AUACAGAGGUUUg...aUUCCUCUUCUUAUC- NC_005800_Y_5399_5469_m GGUAAGGUGGCUG..AAUGCU.uAAGCGGUGGGCCGUAGCCCCAC.AAACAGAGGUUAa...aUUCCUCUUCUUUCCA NC_005796_Y_5434_5504_m GGUAAGAUGGCUG..AGUGUU.uAAGCGGUGGGCCGUAGCCCCAU.AUAUAGAGGUUCa...aUUCCUCUUCUUUCCA NC_006531_Y_5421_5491_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006532_Y_5420_5490_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGACCCAU.AUACGGAGGUUUa...aUUCCUUUUCUUAUCA NC_006533_Y_5424_5494_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGACCCAU.AUACGGAGGUUUa...aUUCCUUUUCUUAUCA NC_006543_Y_5427_5497_m GGUAAGAUGGCUG..AAUGCU.uAAGCGGUGGGCUGUAGUCCCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006534_Y_5422_5492_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAU.GUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006535_Y_5417_5487_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006537_Y_5424_5494_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006539_Y_5432_5502_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_002707_Y_5419_5489_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGCCCCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_011575_Y_5428_5498_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006536_Y_5423_5493_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGACUCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006540_Y_5425_5495_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006541_Y_5427_5497_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAU.GUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006542_Y_5426_5496_m GGUAAGAUGGCUG..AAUGUU.uAAGUGGUGGGCUGUAGACCCAU.AUAUAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006544_Y_5426_5496_m GGUAAGAUGGCUG..AAUGCU.uAAGCGGUGGGCUGUAGUCCCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006545_Y_5424_5494_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006546_Y_5423_5493_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006547_Y_5418_5488_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_013435_Y_5427_5497_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_013607_Y_5427_5496_m GGUAAAAUGGCUG..AGUGUA..AAGCGGUGGGCUGUAGACCCAA.GAAUAGAGGUUUa...aAUCCUCUUUUUAUCA NC_013633_Y_5396_5465_m GGUAAAAUGGCUG..AGUAUA..AAGCGGCGGGCUGUAGACCCGU.AGAUAGAGGUUCa...aCUCCUCUUUUUAUCA NC_013618_Y_5417_5487_m GGUAAGAUGGCUG..AGUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AGACAGAGGUUCa...aCUCCUUUUCUUAUCA NC_013606_Y_5406_5476_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGACCCAU.AAACAGAGGUUCg...aCUCCUCUUCUUAUCA NC_013632_Y_5431_5501_m GGUAAAAUGGCCG..AGUGUA.cAGGCGGUGGGUUGUAGCCCCAU.UUAUAAAGGUUAa...aAUCCUUUUUUUAUCA NC_002761_Y_5415_5485_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAU.GAAUAGAGGUUUa...aUUCCUUUUCUUACCA NC_013629_Y_5432_5503_m GGUAAGAUGGCUG..AGUGUUcuAAGCGGUGGGCUGUAGUCCCAU.AAACAGAGGUUCa...aUUCCUUUUCUUAUCA NC_013630_Y_5450_5520_m GGUAAGAUGGCUG..AGUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AGAGAGAGGUUCa...aUCCCUUUUCUUACCA NC_013611_Y_5448_5518_m GGUAAGAUGGCUG..AGUGUU.uAAGCGGCGGGCUGUAGUCCCGU.AGACAAGGGUUUg...aCUCCUUUUCUUAUCA NC_013608_Y_5407_5477_m GGUAAGAUGGCUG..AGUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AAACAAAGGUUCa...aCCCCUUUUCUUAUCA NC_013601_Y_5385_5455_m GGUAAGAUGGCCG..AAUGUU.uAGGCGGUGGGCUGUAGUCCCAU.AAACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_013612_Y_14066_14134_m GAUAAGAUGGUCG..AUUAU-..AGGCGGUGGGCUGUAAACUCAC.ACAUAGAGGUUUa...aCUCCUCUUCUUAUUA NC_013622_Y_5387_5457_m GGUAAGAUGGCUG..AGUGUU.cAAGCGGUGGGUUGUAGCCCCAU.GUAGAUAGGUUUa...aUUCCUUUUCUUAUCA NC_013602_Y_5407_5477_m GGUAAGAUGGCUG..AGCGUG.uAAGCGGUGGGUUGUAGCCCCAU.GUAGAUAGGUUUa...aCCCCUAUUCUUAUCA NC_013617_Y_5455_5525_m GGUAAGAUGGCUG..AUUGUC.uAAGCGGUGGGCUGUAGUCCCAU.AAAUAGAGGUUUa...aAUCCUCUUCUUAUCA NC_013614_Y_5439_5509_m GGUAAGAUGGCUG..AGUGCC.cAAGCGGUGGGCUGUAGACCCAU.AAACAGAGAUUCa...aUUUCUCUUCUUAUCA NC_013613_Y_5357_5429_m GGUAAGAUGGCCGagCGUUUU.uAGGCGGUGGGCUGUAGACCCAU.GGACAGGGGUUCa...aAUCCUCUUCUUAUCA NC_004417_Y_5358_5428_m GGUAAGGUGGCCG..AGUGUC.uAGGCGGUGGGCUGUAGUUCCAU.AAACAAAGGUUUg...aCUCCUUUUCUUAUCA NC_013610_Y_5354_5424_m GGUAAGAUGGCCG..AGUGUU.gAGGCGGUGGGUUGUAGUUCCAU.GUACAGAGGUUUa...aUUCCUUUUCUUAUCA NC_013631_Y_5401_5471_m GGUAAGAUGGCCG..AGUGUU.uAGGCGGUGGACUGUAGUUCCAU.AUACAGAGGUUUa...aAUCCUUUUUUUACCA NC_013624_Y_5433_5503_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUUCCAU.AGACAGAGGUUUg...aUCCCUCUUCUUACCA NC_013626_Y_5435_5505_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUUCCAU.AGACAGAGGUUCg...aUCCCUCUUCUUAUCA NC_013620_Y_5388_5458_m GGUAAGAUGGCCG..AGUGUC.uAAGCGGUGGGCUGUAGACCUAC.AAACAGGGGUUUa...aUUCCCUUUCUUGCCA NC_013621_Y_5424_5494_m GGUAAGAUGGCUG..AAUGUC.uAAGCGGCGGGCUGUAGUCUCGC.AAACAGAGGUUUa...aUCCCUCUUCUUAUCA NC_013623_Y_5431_5501_m GGUAAGAUGGCUG..AGUGUU.uAAGCGGCAGGCUGUAGUCCUGU.AGAUAGAGGUUCa...aUUCCUUUUCUUAUCA NC_013615_Y_5570_5640_m GGUAAGAUGGCUG..AGUGUU.uAAGUGGUGGACUGUAGUUCCAC.AAACAGAGGUUCa...aCCCCUCUUCUUAUCA NC_013625_Y_5420_5490_m GGUAAGAUGGCUG..AGUGUU.uAAGCGGUGGGCUGUAGUCCCAC.AAAUAGAGGUUCa...aUUCCUCUUUUUAUCA NC_013635_Y_5446_5516_m GGUAAGGUGGCCG..AGUGUU.uAGGCGGUGGGCUGUAGACCCAU.AAACAGAGGUUCa...aGUCCUUUUCUUAUCA NC_005802_Y_5442_5512_m GGUAAGAUGGCUG..AGUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AGACAGAGGUUUa...aCUCCUUUUCUUAUCA NC_005298_Y_11825_11895_m GGUAGGAUGGCUG..AAGGUU.uAAGCGGUGGAUUGUAGUCCCAA.GUAUAUAGGUUAa...aAUCCUUUUCUUAUCA NC_013627_Y_5471_5541_m GGUAAGAUGGCUG..AGCGUA.uAAGUGGUGGGCCGUAGCCCCAU.UGAGAGAGGUUCa...aCUCCUCUUCUUACCA NC_013436_Y_5407_5477_m GGUAAGAUGGCUG..AGCGUG.uAAGUGGUGGGCCGUAGCCCCAU.UCAGAGAGGUUCa...aCUCCUCUUCUUACCA NC_013628_Y_5849_5919_m GGUAAGAUGGCUG..AGCGCU.uAAGUGGUGGGCCGUAGCCCCAU.UGAGAGAGGUUCa...aCUCCUCUUCUUACCA NC_013634_Y_5437_5507_m GGUAAGAUGGCUG..AGUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AUAUAGAGGUUUa...aUUCCUUUUCUUAUCA NC_013605_Y_5429_5499_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGGCUGUAGUCCCAC.ACAUAAAGGUUUa...aUCCCUUUUCUUAUCA NC_005805_Y_5438_5508_m GGUAAGAUGGCUG..AGUGUU.uAAGCGGUGGGCUGUAGUCCCAU.AUAUAGAGGUUUa...aUUCCUUUUCUUAUCA NC_006913_Y_5386_5453_m GGUAGGGUGGCCG..AGGC--..AGGUGGCGGAUUGUAGCUCCGA.AGACGGGGGUUUg...aCUCCUCCUCCUACCA NC_009575_Y_5408_5478_m GGUAGGAUGGCCG..AAGGUU.cAGGCGGCGGAUUGUAGCUCCGA.GGACAGAGGUUUa...aCUCCUCUUCUUACCA NC_009576_Y_5406_5476_m GGUAGGAUGGCCG..AAGGUU.uAGGCGGCGGAUUGUAGCUCCGA.GGACAGAGGUUUa...aCUCCUCUUCUUACCA NC_009577_Y_5402_5472_m GGUAGGGUGGCCG..AAGGCU.uAGGCGGCGGAUUGUAGCCCCGA.UAACAGAGGUUUa...aCUCCUCUCCUUACCA NC_009578_Y_5404_5474_m GGUAGGGUGGCCG..AAGGCU.uAGGCGGCGGAUUGUAGCCCCGA.UAACAGAGGUUUa...aCUCCUCUCCUUACCA NC_008107_Y_5411_5481_m GGUAGGAUGGCCG..AAGGCU.uAGGCGGCGGAUUGUAGCUCCGA.GGACAGAGGUUUa...aCUCCUCUUCUUACCA NC_009580_Y_5408_5478_m GGUAGGAUGGCCG..AAGGUU.uAGGCGGCGGAUUGUAGCUCCGA.GAAUAGAGGUUUa...aCUCCUCUUCUUACCA NC_009583_Y_5415_5485_m GGUAGGGUGGCCG..AAGGCC.uAGGCGGCGGAUUGUAGCUCCGA.AAACAGAGGUUUa...aGUCCUCUUCUUACCA NC_009582_Y_5411_5481_m GGUAGGAUGGCCG..AAGGUU.uAGGCGGCGGAUUGUAGCUCCGA.GUACAGAGGUUUa...aCUCCUCUUCUUACCA NC_009586_Y_5407_5477_m GGUAGGAUGGCCG..AAGGUU.uAGGCGGCGGAUUGUAGCUCCGA.GAACAGAGGUUUa...aCUCCUCUUCUUACCA NC_009591_Y_5414_5484_m GGUAGGAUGGCCG..AAGGUU.uAGGCGGCGGAUUGUAGCUCCGA.GUACAGAGGUUUa...aCUCCUCUUCUUACCA NC_009592_Y_5412_5482_m GGUAGAAUGGUCG..AACGUA.uAGGCGGCGGAUUGUAACUCCGA.GAACAGAGGUUUa...aCUCCUCUUUUUACCA NC_009587_Y_5415_5485_m GGUAGGAUGGCCG..AAGGUU.uAGGCGGCGGAUUGUAGCUCCGA.GUACAGAGGUUUa...aCUCCUCUUCUUACCA NC_002616_Y_5417_5487_m GGUAGAAUGGCCG..AAGGCU.uAGGCGGCGGAUUGUAGCUCCGA.AGACAGAGGUUUg...aCUCCUCUUUUUACCA NC_006917_Y_5378_5448_m GGUAGAGUGGCCG..AAGGCC.uAGGCGGCGGAUUGUAGCUCCGA.CCACGGGGGUUUa...aGUCCUCCCUCUUCCA NC_009588_Y_5390_5460_m GGUAGAAUGGCCG..AAGGCC.cAGGCGGUGGAUUGUAGCUCCAA.UUAUAGAGGUUUa...aCUCCUCUUUCUAUCA NC_009589_Y_5398_5468_m GGUAGGGUGGCCG..AAGGUC.uAGGCGGCGGAUUGUAGCUCCGA.GUACAGAGGUUUa...aCUCCUCUCCUUGCCA NC_009593_Y_5405_5475_m GGUAGGGUGGCCG..AAGGCU.uAGGCGGCGGAUUGUAGCCCCGA.UAACAGAGGUUUa...aCUCCUCUCCUUACCA NC_007889_Y_5382_5450_m GGUAGGGUGGCCG..AACAU-..AGGUGGUGGGUUGUAGCCCCAA.AGAUAAAGGUUUa...aGUCCUUUCCCUAUCA NC_009579_Y_5404_5474_m GGUAGGUUGGCCG..AGAGUU.uAGGCGGCGGAUUGUAGCUCCGA.UUACAGAGGUUUa...aGUCCUCUUUCUACCA NC_009581_Y_5408_5478_m GGUAGAUUGGCCG..AGGGCU.uAGGCGGCGGAUUGUAGCUCCGA.UGACAGAGGUUUa...aAUCCUCUUUCUACCA NC_003097_Y_5409_5479_m GGUAGAUUGGCCG..AGGGCU.uAGGCGGCGGAUUGUAGCUCCGA.UGACAGAGGUUUa...aAUCCUCUUUCUACCA NC_009584_Y_5408_5477_m GGUAGGGUGGCCG..AAAGUU.uAGGCGGCGGAUUGUAGCUCCGA.GGAUAGAGGUUUg...aUUCCUCUUCUUACC- NC_009585_Y_5422_5491_m GGUAGGGUGGCCG..AAAGCU.uAGGCGGCGGAUUGUAGCUCCGA.AGAUAGGGGUUUa...aUUCCUCUUCUUACC- NC_006919_Y_5382_5452_m GGUAGAAUGGCUG..AAGGUU.uAGGCGGCGGAUUGUAGCUCCGA.GGAUAGAGGUUUa...aUUCCUCUUUCUACCA NC_005798_Y_5436_5506_m GGUAAGGUGGCUG..AAUGUU.uAAGCGGUGGGUUGUAGCUCCAU.GAACAGAGGUUUa...aUUCCUCUCCUUAUCA NC_005803_Y_5437_5507_m GGUAAGGUGGCUG..AAUGUU.uAAGCGGUGGGUUGUAGCUCCAU.GAACAGAGGUUUa...aUUCCUCUCCUUAUCA NC_005804_Y_5434_5504_m GGUAAGAUGGCUG..AAUGUA.uAAGCGGUGGGUUGUAGCUCCAU.GAACAGAGGUUUa...aUUCCUCUUCUUACCA NC_005799_Y_5434_5504_m GGUAGGAUGGCUG..AAUGUU.uAAGCGGUGGGUUGUAGCUCCAU.GGACAGAGGUUUg...aUUCCUCUUCUUACCA NC_004593_Y_5368_5438_m GGUAGGAUGGCUG..AGAGUU.uUAGCGGUGGGUUGUAGCCCCAU.GUACAGGGGUUUa...aGUCCCCUUCCUAUCA NC_004592_Y_5362_5432_m GGUAAGAUGGCUG..AGAGCU.uAAGUGGUGGGUUGUAGCCCCUC.AUACAGGGGUUAa...aAUCCCCUUCUUAUCA NC_008128_Y_5391_5458_m GGUAAGGUGGCUG..AGGU--..AAGCGGUGGAUUGUAGCCCCAU.AGACAGAGGUUUg...aGUCCUCUCCUUAUCA NC_004391_Y_5387_5455_m GGUAAGGUGGCUG..AGUUU-..AAGCGGUGGAUUGUAACCCCAC.AUACAGAGGUUUa...aGUCCUCUUCUUAUCA NC_004393_Y_5408_5475_m GGUAAGGUGGCUG..AGGU--..AAGCGGUGGAUUGUAACCCCAU.AGACAGAGGUUUa...aGCCCUCUCCUUAUCA NC_003188_Y_5409_5476_m GGUAAGGUGGCUG..AGGU--..AAGCGGUGGAUUGUAGCCCCAU.AGACAGAGGUUUg...aGUCCUCUCCUUAUCA NC_008126_Y_5852_5919_m GGUAGGGUGGCUG..AGUU--..AAGCGGUGGGUUGUAGCCCCAU.AGACAGAGGUUUg...aGUCCUCUCCCUGUCA NC_008127_Y_5420_5487_m GGUAGGGUGGCUG..AGUU--..AAGCGGUGGGUUGUAGCCCCAU.AGACGGAGGUUUg...aAUCCUCUCCCUGUCA NC_003189_Y_5407_5474_m GGUAAGAUGGCUG..AGUU--..AGGCGGUGGAUUGUAGCCCCAC.AUACAGAGGUUUg...aGCCCUCUUCUUACCA NC_004394_Y_5410_5477_m GGUAAGGUGGCUG..AGGU--..AGGCGGUGGAUUGUAGCCCCAC.AUACAGAGGUUUg...aGCCCUCUCCUUAUCA NC_004395_Y_5424_5491_m GGUAAGGUGGCUG..AGGU--..AGGCGGUGGAUUGUAACCCCAC.AUACAGAGGUUUa...aGCCCUCUCCUUAUCA NC_004392_Y_5403_5472_m GGUAAGGUGGCUG..AGGUUU..AAGCGGUGGAUUGUAGCCCCAC.AAACAGAGGUUUg...aGUCCUCUUCUUAUCA NC_003187_Y_5392_5460_m GGUAAGGUGGCUG..AGGUU-..AAGCGGUGGAUUGUAGCCCCAU.AGACAGAGGUUUg...aGUCCUCUCCUUAUCA NC_004386_Y_5412_5481_m GGUAAGAUGGCUG..AGGUUU..AAGCGGUGGAUUGUAGCCCCAU.AGACAGAGGUUUa...aGUCCUCUUCUUACCA NC_011174_Y_5410_5480_m GGUAAGAUGGCUG..AGUGUU.uAAGUGGUGGAUUGUAGCUCCAU.GUACAGAGGUUUg...aAUCCUCUUCUUAUCA NC_004385_Y_5398_5464_m GGUAAGAUGGCUG..AGUU--..AGGCGCUGGACUGUAGUCCCAU.GAACAGAGGUUUa...aGCCCUCUUCUUAUC- NC_011178_Y_5412_5481_m GGUAAGAUGGCUG..AGUUUU..AAGCGGUGGAUUGUAGCCCCAC.AAACAGAGGUUUg...aAUCCUCUUCUUAUCA NC_011172_Y_5387_5455_m GGUAAGAUGGCUG..AGAGUU..AAGCGGUGGUUUGUAGCUCCAU.GAAUAGAGGUUAa...aAUCCUCUUCUUAUC- NC_012976_Y_5379_5447_m 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GGUAGGGUAGCCG..AGUGCC.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUCa...aGUCCUCUCCCUAUCA NC_010156_Y_5423_5493_m GGUAGGGUAGCCG..AGCGCU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUCCCUAUCA NC_010194_Y_5421_5491_m GGUAGGGUAGCCG..AGCGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUCCCUAUCA NC_008667_Y_5425_5495_m GGUAGGGUAGCCG..AGUGCU.uAGGCGGCGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUCCUUACCA NC_008656_Y_5415_5485_m GGUAGGGUGGCUG..AGUGUU.uAGGCGGCGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUCCCUAUCA NC_008657_Y_5412_5482_m GGUAGGGUGGCCG..AGUGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUUCCUAUCA NC_010341_Y_6363_6433_m GGUAGGGUAGCCG..AGUGCU.uAGGCGGCGGGUUGUAGCCCCGA.AGACAGAGGUUUg...aGUCCUCUCCUUAUCA NC_011141_Y_5422_5492_m GGUAAGGUAGCCG..AGUGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUCCUUAUCA NC_008646_Y_5418_5488_m GGUAGGGUAGCCG..AGCGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUg...aGUCCUCUUCCUAUCA NC_008110_Y_5407_5477_m GGUAGGGUAGCCG..AGUGCC.cAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUUCCUAUCA NC_008744_Y_5427_5497_m GGUAGGGUAGCCG..AGCGUC.cAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUCCCUAUCA NC_008652_Y_5429_5499_m GGUAGGGUAGCCG..AGCGUU.cAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUCa...aGUCCUCUCCCUAUCA NC_008663_Y_5423_5493_m GGUAGGGUAGCCG..AGUGCC.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUCCCUAUCA NC_008112_Y_5408_5478_m GGUAGGGUAGCCG..AGUGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUUCCUACCA NC_008684_Y_5414_5484_m GGUAAGGUAGCCG..AGCGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUCCUUAUCA NC_011192_Y_5410_5479_m GGUAGGGUGGCCG..AGUGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUUCCUAUC- NC_008681_Y_5414_5484_m GGUAGGGUAGCCU..AGUGCC.cAGGCGGCGGGUUGUAGCCCCGA.AGACAGAGGUUUg...aGUCCUCUUCCUAUCA NC_011161_Y_10034_10104_m GGCAGGGUGGCCG..AGCGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUg...aACCCUCUCCCUACCA NC_008665_Y_5414_5484_m GGUAGGGUAGCCG..AGCGCU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUg...aGUCCUCUCCCUACUA NC_011210_Y_5418_5488_m GGUAGGAUGGCCG..AAUGUC.cAGGUGGUGGGUUGUAGCCCCGAaGAAUAGAGGUUUa...aAUCCUCUUCCUAUC- NC_008664_Y_5415_5485_m GGUAGGGUGGCCG..AGCGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUg...aGUCCUCUCCCUACCC NC_010110_Y_5416_5484_m GGUAGGAUAGCCG..AGAAU-..AGGCAGUGGGUUGUAGCCCCGA.AGACAGAGGUUUg...aGUCCUCUUCUUACCA NC_008658_Y_5416_5484_m GGUAGGGUGGCCG..AAUGUA..AGGCGUCGGGUUGUAGCCCCGA.GUAUGAAGGUUCa...aGUCCUUUCUCUAUC- NC_011211_Y_5414_5483_m GGUAGGGUGGCCG..AACGUU..AGGCGGCGGGUUGUAGCUCCGU.GAACAGAGGUUUa...aGUCCUCUCCUUAUCA NC_008642_Y_5408_5477_m GGUAGGGUGGCCG..AACGCU..AGGCGGCGGGUUGUAGCUCCGU.GAAUAGAGGUUUa...aGUCCUCUCCUUAUCA NC_013709_Y_5406_5475_m GGUAGGAUGGCCG..AGCGUU..UGGCGUCGGAUUGUAGCCCCGC.AGACAGAGGUUAa...aGUCCUCUUCUUACCA NC_007885_Y_5400_5468_m GGUAGGGUGGCCG..AGCGCU..UGGCGUCGGAUUGUAGCUCCGC.AGACAGAGGUUUa...aGUCCUCUUCCUACC- NC_004694_Y_5414_5484_m GGUAGGGUAGCCG..AGCGUU.uAGGCGGCGGGUUGUAGCCCUGA.AGACAGAGGUUUa...aGUCCUCUCCCCACCA NC_013186_Y_6338_6407_m GGUAGGGUAGCCG..AGCGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGAUAGAGGUUUa...aAUCCUCUUCCUAUC- NC_013189_Y_6334_6403_m GGUAGGGUAGCCG..AGCGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUUCCUAUC- NC_008648_Y_5419_5489_m GGUAGGGUAGCCG..AGUGCU.cAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUCa...aAUCCUCUCCUUAUCA NC_008651_Y_5414_5484_m GGUAGAGUAGCCU..AGUGCC.uAGGCGGCGGGUUGUAGCCCCGA.AGACAGAGGUUUg...aGUCCUCUCCCUAUCA NC_008682_Y_5432_5502_m GGUAGGGUAGCCG..AGUGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUCCCUAUCA NC_013072_Y_5433_5503_m GGUAGGGUAGCCG..AGUGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUCCCUAUCA NC_008653_Y_5426_5496_m GGUAGGGUAGCCG..AGUGUU.uAGGCGGCGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aAUCCUCUCCUUAUCA NC_008672_Y_5407_5477_m GGUAGGGUGGCCG..AGUGUU.uAGGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUCCCUAUCA NC_004693_Y_5443_5513_m GGUAGGGUGGCUG..AAUGCU.uAGGCGGCAGGUUGUAGCCCUGA.GGACAAAGGUUUa...aUUCCUUUCCCUAUCA NC_011018_Y_5443_5513_m GGUAGAGUGGCUG..AGUGCG.cAAGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUa...aGUCCUCUCUGUACCA NC_004702_Y_5440_5510_m GGUAGAGUGGCUG..AGUGCG.cAAGCGGUGGGUUGUAGCCCCGA.AGACAGAGGUUUg...aGUCCUCUCUGUACCA NC_007881_Y_5408_5475_m GGUAGGAUGGCUG..AGUA--..AAGCGGUAGGUUGUAGCCCUGA.AGACAGAGGUUUa...aUCCCUCUUCCUAUCA NC_007890_Y_5404_5470_m GGUAGGAUGGCUG..AGU---..AAGCGGUAGGUUGUAGCCCUAA.AGACAGAGGUUUa...aUCCCUCUUCCUGUCA NC_007882_Y_5413_5480_m GGUAGGAUGGCUG..AGUA--..AAGCGGUAGGUUGUAGCCCUGA.AGACAGAGGUUUg...aUCCCUCUUCCUAUCA NC_007891_Y_5408_5475_m GGUAGGAUGGCUG..AGUA--..AAGCGGUAGGUUGUAGCCCUGA.AGACAGAGGUUUg...aUCCCUCUUCCUAUCA NC_007892_Y_5419_5488_m GGUAGGAUGGCUG..AUUGUA..AAGCGGUAGGUUGUAGCCCUAA.AAAUAGGGGUUUa...aUUCCCCUUUCUGCCA NC_004692_Y_5383_5451_m GGUAGGGUGGCUG..AAGUA-..AAGUGGUGGAUUGUAGCUCCAU.CAAUAGGGGUUUa...aGUCCCCUCCCUAUCA NC_008232_Y_5382_5452_m GGUAGGGUGGCCG..AGAGUU.uAGGCGGCGGAUUGUAGCUCCGU.GUACAAAGGUUCa...aGUCCUUUUUCUACCA NC_004697_Y_5401_5471_m GGUAGGGUGGCCG..AGGGUU.uAGGCGGUGGAUUGUAGCUCCAU.GUACGAAGGUUUa...aGUCCUUUUCCUAUCA NC_004698_Y_5378_5446_m GGUAGGAUGGCCG..AGGGUU..AGGCGGUGGAUUGUAGCUCCAU.AUACAGAGGUUCa...aGUCCUCUUCUUAUC- NC_008280_Y_5411_5481_m GGUAGGAUGGCCG..AGGGUU.uAGGCGGUGGAUUGUAGCUCCAU.AAACGAAGGUUUa...aGUCCUUUUCCUAUCA NC_003489_Y_6264_6333_m GGUAGAGUGGCCG..AGAGUU..AGGCGGUGGAUUGUAGCUCCAU.GAACAAAGGUUUa...aGUCCUUUCUCUAUCA NC_006381_Y_5395_5464_m GGUAGGAUGGCCG..AGGGUU..AGGCGGUGGAUUGUAGCUCCAU.GAACAAAGGUUUa...aGUCCUUUUCCUAUCA NC_012707_Y_5438_5505_m GGUAGAAUGGCUG..AGUA--..AAGCGGUGGAUUGUAGCUCCAU.GUACAGAGGUUCg...aGUCCUCUUUCUAUCA NC_005145_Y_5434_5504_m GGUAGGGUGGCUG..AAUGUU.uAAGCGGUGGAUUGUAGCUCCAU.GUACAGAGGUUUa...aUUCCUCUCCCUCCCA NC_012705_Y_5460_5530_m GGUAGGAUGGCUG..AAGGUU.uAAGCGGUGGAUUGUAGCUCCAU.GUAUAGAGGUUUa...aUUCCUCUUCCUAUCA NC_012717_Y_5460_5530_m GGUAGGAUGGCUG..AAGGUU.uAAGCGGUGGAUUGUAGCUCCAU.GUAUAGAGGUUUa...aUUCCUCUUCCUAUCA NC_012710_Y_5437_5506_m GGUAAAAUGGCUG..AAUGUU.uAAGCGGUGGAUUGUAGCUCCAU.AUAUAGAGGUUAa...aGUCCUCUUUUUAUC- NC_012711_Y_5437_5506_m GGUAAAAUGGCUG..AAUGUU.uAAGCGGUGGAUUGUAGCUCCAU.GUAUAGAGGUUAa...aAUCCUCUUUUUAUC- NC_012712_Y_5437_5506_m GGUAAAAUGGCUG..AAUGUU.uAAGCGGUGGAUUGUAGCUCCAU.GUAUAGAGGUUAa...aAUCCUCUUUUUAUC- NC_012713_Y_5440_5509_m GGUAAAAUGGCUG..AAUGUU.uAAGCGGUGGAUUGUAGCUCCAU.GUACAGAGGUUAa...aAUCCUCUUUUUAUC- NC_012714_Y_5456_5526_m GGUAAGAUGGCUG..AGUGUU.uAAGCGGUGGAUUGUAGCUCCAU.GUAUAGAGGUUAg...aGUCCUUUUCUUAUCA NC_012715_Y_5448_5518_m GGUAAGAUGGCUG..AAUGUU.uAAGCGGUGGAUUGUAGCUCCAU.AAAUAGAGGUUAa...aGUCCUUUUCUUAUCA NC_010570_Y_5402_5472_m GGUAAAGUGGCUG..AAUGUU.uAAGCGGUGGGUUGUAGCCCCAU.AUACAGAGGUUAa...aUUCCUCUUUUUAUCA NC_003095_Y_5423_5492_m GGUAGAAUGGCUG..AAUGUU..AAGCGGUGGGUUGUAGCCCCUU.AUAUAGAGGUUAa...aUUCCUCUUUCUAUCA NC_007012_Y_6400_6470_m GGUAGAAUGGCUG..AGUGUU.uAAGCGGUGGGUUGUAGCCCCAC.ACAUGGAGGUUUa...aUUCCUCUUUCUAUCA NC_003096_Y_5389_5459_m GGUAGAAUGGCUG..AAGGUU.uAAGCGGUGGAUUGUAGCUCCAU.AUAUAGAGGUUUg...aAUCCUCUUUUUAUCA NC_005251_Y_5390_5460_m GGUAAGAUGGCUG..AGUGUU.cAAGCGGCAGGUUGUAGCCCUGU.AAAUGAAGGCUAa...aUCCCUUCUCUUAUCA NC_001778_Y_5346_5416_m GGUAAGAUGACUG..AGUGUU.uAAGUGGCAGGUUGUAGCCCUGU.AAAGGAAGGUUUa...aUCCCUUCUCUUAUCA NC_004418_Y_5347_5417_m GGUAAGAUGGCUG..AGUGUU.uAAGCGGCAGGUUGUAGCCCUGU.AAAGGAAGGUUUa...aUCCCUUCUCUUAUCA #=GC SS_cons (((((((,,<<<<..______..>>>>,<<<<<_______>>>>>.,,,,<<<<<___.....__>>>>>))))))): #=GC RF gguaggaUGGCug..AauaaU..aaGCGauagaUUGUAAAucuau.uuAuGggggUua.....auccccCuccuaccA #=GC SN 0000000..1111..........1111.22222.......22222.....33333..........333330000000. #=GF CS 78 columns, 21 paired, 21 covariant; 4 stems //