# STOCKHOLM 1.0          BACTERIAL Trp
#=GC CS                                                                              4425554..3343..........3433.66324.......42366.....5642.........24654555244....
#=GC BP                                                                              +++++++..++++..........++++.+++++.......+++++.....+++++.......++++++++++++....
tdbD3280|Acholeplasma_laidlawii|2148|Trp|CCA                                         GGGGGCATGGTGTCAAC-GGT-AGCACACAGGTCTCCAAAACCTTTAG-TGTGGGTTCGAATCCTGCTGCCCTCGCCA
tdbD11461|Acinetobacter_sp._ADP1|62977|Trp|CCA                                       AGGTCAGTAGTTCAATT-GGT-AGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTCGAGTCCCTCCTGGCCTGCCA
tdbD11336|Agrobacterium_tumefaciens_str._C58|176299|Trp|CCA                          -GGGGTATAGCTCAGTT-GGT-AGAGCGGCGGTCTCCAAAACCGCAGGTCGTAAGTTCGAGCCTTACTGCCCCTGCCA
tdbD11319|Aquifex_aeolicus_VF5|224324|Trp|CCA                                        GGGGCTGTAGCTCAATT-GGC-AGAGCGCGGGACTCCAAATCCCGTGGGTGGGGGTTCGAGTCCTCCCAGCCCCGCCA
tdbD11428|Bacillus_anthracis_str._Ames|198094|Trp|CCA                                AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTG---
tdbD11439|Bacillus_anthracis_str._Sterne|260799|Trp|CCA                              AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTG---
tdbD11452|Bacillus_cereus_ATCC_10987|222523|Trp|CCA                                  AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTG---
tdbD11415|Bacillus_cereus_ATCC_14579|226900|Trp|CCA                                  AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTG---
tdbD11397|Bacillus_halodurans_C-125|272558|Trp|CCA                                   AGGGGCATAGTTTAAC--GGT-AGAACAGAGGTCTCCAAAACCTCCGG-TGTGGGTTCGATTCCTACTGCCCCTGCCA
tdbD11290|Bacillus_subtilis_subsp._subtilis_str._168|224308|Trp|CCA                  AGGGGCATAGTGTAAC--GGT-AGAACAGAGGTCTCCAAAACCTCCGG-TGTGGGTTCGATTCCTACTGCCCCTGCCA
tdbD11462|Bacillus_thuringiensis_serovar_konkukian_str._97-27|281309|Trp|CCA         AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTG---
tdbD11425|Bacteroides_thetaiotaomicron_VPI-5482|226186|Trp|CCA                       ACGGGAGTAGCTCAGTT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTCGGGAGTTCGAGCCTCTCCTCCCGTG---
tdbD11429|Bartonella_henselae_str._Houston-1|283166|Trp|CCA                          AGGGGTATAGCTCAGTT-GGT-AGAGCGGCGGTCTCCAAAACCGCAGGTCGCGGGTTCGAGCCCTGCTGCCCCTGCCA
tdbD11465|Bartonella_quintana_str._Toulouse|283165|Trp|CCA                           AGGGGTATAGCTCAGTT-GGT-AGAGCGGCGGTCTCCAAAACCGCAGGTCGCGGGTTCAAGCCCTGCTGCCCCTGCCA
tdbD11430|Bdellovibrio_bacteriovorus_HD100|264462|Trp|CCA                            AGGGGTGTAGCTCCAGC-GGT-AGAGCGAACGACTCCAAATCGTTAGGTCGTGGGTTCGAATCCCTCCGCCCCTGCCA
tdbD11386|Bifidobacterium_longum_NCC2705|206672|Trp|CCA                              AGGGAAGTGGCGCAATT-GGT-AGCGCAACGGTCTCCAAAACCGTAGGTTGTGGGTTCGAGTCCCGCCTTCCCTGCCA
tdbD11306|Borrelia_burgdorferi_B31|224326|Trp|CCA                                    AGGTCAGTAGTTCCAAC-GGT-AGAACGACAGTCTCCAAAACTGTATGCTGGGGGTTCGAATCCCTCCTGACCTG---
tdbD11440|Borrelia_garinii_PBi|290434|Trp|CCA                                        AGGTCAGTAGTTCCAAC-GGT-AGAACGACAGTCTCCAAAACTGTATGCTGGGGGTTCGAATCCCTCCTGACCTG---
tdbD11398|Bradyrhizobium_japonicum_USDA_110|224911|Trp|CCA                           AGGAGTGTAGCTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGGGTCGCAGGTTCGAGCCCTGCCACTCCTGCCA
tdbD11329|Brucella_melitensis_16M|224914|Trp|CCA                                     AGGGGTATAGCTCAGTT-GGT-AGAGCGACGGTCTCCAAAACCGTAGGTCGCGGGTTCGAACCCTGCTGCCCCTGCCA
tdbD11387|Brucella_suis_1330|204722|Trp|CCA                                          AGGGGTATAGCTCAGTT-GGT-AGAGCGACGGTCTCCAAAACCGTAGGTCGCGGGTTCGAACCCTGCTGCCCCTGCCA
tdbD11291|Buchnera_aphidicola_str._APS_(Acyrthosiphon_pisum)|107806|Trp|CCA          AGGGGTGTAGTTCAATTTGGT-AGAGCATCGGTCTCCAAAACCGAAAGTTGTAGGTTCAAATCCTTCCACCCCTG---
tdbD11417|Buchnera_aphidicola_str._Bp_(Baizongia_pistaciae)|224915|Trp|CCA           AGGGATGTAGCTCAATT-GGT-AGAGTATCGGTCTCCAAAACCGAATGTTGGGGGTTCAATTCCCTCCATCCCTG---
tdbD11372|Buchnera_aphidicola_str._Sg_(Schizaphis_graminum)|198804|Trp|CCA           AGGGGTGTAGTTCAATTTGGT-AGAGCATCGGTCTCCAAAACCGAAAGTTGTAGGTTCAAGTCCTTCCACCCCTGCCA
tdbD11307|Campylobacter_jejuni_subsp._jejuni_NCTC_11168|192222|Trp|CCA               AGGGCAATAGCTCCAAC-GGT-AGAGCGCCGGATTCCAAATCCGATGGTTGGGGGTTCGAATCCCTCTTGCCCTGCCA
tdbD11466|Candidatus_Blochmannia_floridanus|203907|Trp|CCA                           AGGGGTGTAGTTCAAT--GGT-AGAATATCGGTCTCCAAAACCGAGGGTTGGGAGTTCAAGTCTCTTCACCCCTG---
tdbD11434|Candidatus_Protochlamydia_amoebophila_UWE25|264201|Trp|CCA                 GGGTGTGTAGCTCAGCT-GGT-AGAGCAACGGTCTCCAAAGCCGTCGGTCGGGGGTTCGAATCCCTCCGCACTCG---
tdbD11308|Caulobacter_crescentus_CB15|190650|Trp|CCA                                 AGGAGTGTAGCTCAGCT-GGT-AGAGCATCGGTCTCCAAAACCGAGGGCCGGGGGTTCGAGTCCCTCCACTCCTGCCA
tdbD11324|Chlamydia_muridarum_Nigg|243161|Trp|CCA                                    GGGTGTGTAGCTTAGAT-GGT-AGAGCAGTGGCCTCCAAAGCCGCCGGTCGGGGGTTCGAATCCCTCCGCACTCG---
tdbD11288|Chlamydia_trachomatis_D/UW-3/CX|272561|Trp|CCA                             GGGTGTGTAGCTTAGAT-GGT-AGAGCAGTGGCCTCCAAAGCCGCCGGTCGGGGGTTCGAATCCCTCCGCACTCG---
tdbD11286|Chlamydophila_pneumoniae_AR39|115711|Trp|CCA                               GGGTGTGTAGCTTAGCT-GGT-AGAGCAGTGGCCTCCAAAGCCGCCGGTCGGGGGTTCGATTCCCTTCGCACCCG---
tdbD11287|Chlamydophila_pneumoniae_CWL029|115713|Trp|CCA                             GGGTGTGTAGCTTAGCT-GGT-AGAGCAGTGGCCTCCAAAGCCGCCGGTCGGGGGTTCGATTCCCTTCGCACCCG---
tdbD11299|Chlamydophila_pneumoniae_J138|138677|Trp|CCA                               GGGTGTGTAGCTTAGCT-GGT-AGAGCAGTGGCCTCCAAAGCCGCCGGTCGGGGGTTCGATTCCCTTCGCACCCG---
tdbD11369|Chlorobium_tepidum_TLS|194439|Trp|CCA                                      ACGTCAGTAGCTTAATT-GGT-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCTCCTGACGTA---
tdbD11327|Clostridium_acetobutylicum_ATCC_824|272562|Trp|CCA                         AGGGGTATAGCTCAATT-GGT-AGAGTAACGGTCTCCAAAACCGTCGGTTGTGGGTTCGATTCCTACTGCCCCTGCCA
tdbD11323|Clostridium_perfringens_str._13|195102|Trp|CCA                             AGGGGTATGGCTCAATT-GGT-AGAGTAGTGGTCTCCAAAACCATTGGTTGTGGGTTCGAGTCCTACTGCCCCTGCCA
tdbD11399|Clostridium_tetani_E88|212717|Trp|CCA                                      AGGGGTATAGCTCAATT-GGT-AGAGTAGCGGTCTCCAAAACCGTTGGTTCCGGGTTCAAGTCCTCGTGCCCCTGCCA
tdbD11431|Corynebacterium_diphtheriae_NCTC_13129|257309|Trp|CCA                      AGGGGCGTAGTTCAATT-GGT-AGAGCAACGGTCTCCAAAACCGTAGGTTGCAGGTTCAAGTCCTGTCGCCCCTG---
tdbD11388|Corynebacterium_efficiens_YS-314|196164|Trp|CCA                            AGGGGCGTAGCTCAATT-GGC-AGAGCAACGGTCTCCAAAACCGTAGGTTGCAGGTTCAAGTCCTGTCGCCCCTG---
tdbD11374|Corynebacterium_glutamicum_ATCC_13032|196627|Trp|CCA                       AGGGGCGTAGCTCAATT-GGC-AGAGCAACGGTCTCCAAAACCGTAGGTTGCAGGTTCGATTCCTGTCGCCCCTG---
tdbD11413|Coxiella_burnetii_RSA_493|227377|Trp|CCA                                   AGGCCAGTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGATTCCCTCCTGGCCTGCCA
tdbD11309|Deinococcus_radiodurans_R1|243230|Trp|CCA                                  GGGTTCTTAGCTCAGTT-GGT-AGAGCGGCGGTCTCCAAAACCGTAGGTCGAGGGTTCAAGTCCTTCAGGGCCCGCCA
tdbD11453|Desulfovibrio_vulgaris_subsp._vulgaris_str._Hildenborough|882|Trp|CCA      AGGGCAGTAGCTCTAAC-GGCTAGAGCGCCGGTCTCCAAAACCGGATGTTGGGGGTTCGAATCCCTCCTGCCCTGCCA
tdbD11403|Enterococcus_faecalis_V583|226185|Trp|CCA                                  TGGAGCATAGCTTAATC-GGC-AGAGCAGCGGTCTCCAAAACCGTTGG-TATAGGTTCGAGTCCTATTGTTCCAG---
tdbD11418|Escherichia_coli_CFT073|199310|Trp|CCA                                     AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA
tdbD11300|Escherichia_coli_K12|83333|Trp|CCA                                         AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA
tdbD11301|Escherichia_coli_O157:H7|83334|Trp|CCA                                     AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA
tdbD11302|Escherichia_coli_O157:H7_EDL933|155864|Trp|CCA                             AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA
tdbD11370|Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586|190304|Trp|CCA         AGGTCAATGGCTCAATT-GGT-AGAGCATCGGTCTCCAAAACCGAGGGTTGGGGGTTCGAGTCCCTCTTGACCTGCCA
tdbD11441|Geobacter_sulfurreducens_PCA|243231|Trp|CCA                                AGGCCAGTAGCTCTAAC-GGCTAGAGCGCCGGTCTCCAAAACCGGATGTTGGGGGTTCGAATCCCTCCTGGCCTGCCA
tdbD11305|Haemophilus_influenzae_Rd_KW20|71421|Trp|CCA                               AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGCCTCTCCGCCCCTGCCA
tdbD11303|Helicobacter_pylori_26695|85962|Trp|CCA                                    AGGTCAGTAGCTCCAAT-GGT-AGAGCGTCGGTCTCCAAAACCGGTTGTTGGGGGTTCGAGTCCCTCCTGGCCTGCCA
tdbD11304|Helicobacter_pylori_J99|85963|Trp|CCA                                      AGGTCAGTAGCTCCAAT-GGT-AGAGCGTCGGTCTCCAAAACCGGTTGTTGGGGGTTCGAGTCCCTCCTGGCCTGCCA
tdbD11442|Lactobacillus_johnsonii_NCC_533|257314|Trp|CCA                             AGGGATATCGTATAAA--GGT-AGTACATCGGTCTCCAAAACCGCTAG-TGTGGGTTCAATTCCTACTATCCCTG---
tdbD11405|Lactobacillus_plantarum_WCFS1|220668|Trp|CCA                               GCAGATATGATCTAATT-GGC-AAGATGGCGGTCTCCAAAACCGTCTA-TGTTGGTTCAAATCCAGCTATCTGTG---
tdbD11443|Leifsonia_xyli_subsp._xyli_str._CTCB07|281090|Trp|CCA                      AGGGCGGTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCGATTCCTGTCCGCCCTG---
tdbD11389|Leptospira_interrogans_serovar_Lai_str._56601|189518|Trp|CCA               AGGCCTGTAGTTTAGT--GGT-AGAACTAGGATCTCCAAAGTCCTTGG-TGGGAGTTCGATTCTCTCCGGGCCTG---
tdbD11320|Listeria_innocua_Clip11262|272626|Trp|CCA                                  AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTGCCA
tdbD11321|Listeria_monocytogenes_EGD-e|169963|Trp|CCA                                AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTGCCA
tdbD11454|Listeria_monocytogenes_str._4b_F2365|265669|Trp|CCA                        AGGGGCATAGTTTAAA--GGT-AGAACTGAGGTCTCCAAAACCTCCAG-TGTGGGTTCGATTCCTACTGCCCCTGCCA
tdbD11455|Mesoplasma_florum_L1|265311|Trp|CCA                                        AGAGGTATAGTTCAGAT-GGT-AGAACATCGGTCTCCAAAACCGAGTGTCACGAGTTCGAGTCTTGTTACCTCTGCCA
tdbD11330|Mesorhizobium_loti_MAFF303099|266835|Trp|CCA                               ACGGGCATAGCTCAGTT-GGT-AGAGCGGCGGTCTCCAAAACCGCAGGTCGTAGGTTCGAGCCCTGCTGCCCGTGCCA
tdbD11411|Mycobacterium_bovis_AF2122/97|233413|Trp|CCA                               AGGGGCGTAGCTCAACT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTCGCCCCTG---
tdbD11297|Mycobacterium_leprae_TN|272631|Trp|CCA                                     AGGGGCGTAGCTCAACT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAATCCTGTCGCCCCTG---
tdbD11292|Mycobacterium_tuberculosis_CDC1551|83331|Trp|CCA                           AGGGGCGTAGCTCAACT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTCGCCCCTG---
tdbD11433|Mycobacterium_tuberculosis_H37Rv|83332|Trp|CCA                             AGGGGCGTAGCTCAACT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTCGCCCCTG---
tdbD3274|Mycoplasma_capricolum|2095|Trp|TCA                                          AGGGGCATAGTTCAGTA-GGT-AGAACATCGGTCTTCAAAACCGAGTGTCACGAGTTCGAGTCTTGTTGCCCCTGCCA
tdbD11410|Mycoplasma_gallisepticum_R|233150|Trp|CCA                                  AGGGGTGTAGTTCAAT--GGT-AGAACTAGGGTCTCCAAAACCTTCGA-TGCGGGTTCGATTCCTGTCACCCCTGCCA
tdbD11310|Mycoplasma_genitalium_G37|243273|Trp|CCA                                   GGGGGTGTAGTTTAGT--GGT-AGAACAACAGTCTCCAAAACTGTCTG-TGTGGGTTCGATTCCTTCCACCCCCGCCA
tdbD11311|Mycoplasma_pneumoniae_M129|272634|Trp|CCA                                  GGGGGTGTAGTTTAGT--GGC-AGAACAACAGTCTCCAAAACTGTCTG-TGTGGGTTCGATTCCTTCCACCCCCGCCA
tdbD11335|Mycoplasma_pulmonis_UAB_CTIP|272635|Trp|CCA                                GGGAGATTAGTATAAT--GGT-AGTACTACAGATTCCAAACCTGTTTG-CGTGGGTTCGATTCCTACATCTCTCGCCA
tdbD11293|Neisseria_meningitidis_MC58|122586|Trp|CCA                                 AGGCCAATAGCTCAATT-GGT-AGAGTATCGGTCTCCAAAACCGAGGGTTGGGGGTTCGAGACCCTCTTGGCCTGCCA
tdbD11294|Neisseria_meningitidis_Z2491|122587|Trp|CCA                                AGGCCAATAGCTCAATT-GGT-AGAGTATCGGTCTCCAAAACCGAGGGTTGGGGGTTCGAGACCCTCTTGGCCTGCCA
tdbD11423|Nitrosomonas_europaea_ATCC_19718|228410|Trp|CCA                            AGGCCAGTAGCTCAATT-GGC-AGAGCGTCGGTCTCCAAAACCGAAGGTTGGGGGTTCGATGCCCTCCTGGCCTGCCA
tdbD11334|Nostoc_sp._PCC_7120|103690|Trp|CCA                                         GCGCTCTTAGTTCAGTT-GGT-AGAACGCAGGTCTCCAAAACCTGATGTCGGGGGTTCAAGTCCTCCAGGGCGCG---
tdbD11390|Oceanobacillus_iheyensis_HTE831|221109|Trp|CCA                             AGGGGTATAGTTTAAT--GGT-AAAACGAAGGTCTCCAAAACCTTTGA-TGTGGGTTCGATTCCTACTACCCCTGCCA
tdbD11432|Onion_yellows_phytoplasma_OY-M|262768|Trp|CCA                              AGGGATATGATGTCAAT-GGT-AGCATAACGGTCTCCAAAACCGCTCG-TTCGGGTTCGAATCCTGATATCCCTGCCA
tdbD11312|Pasteurella_multocida_subsp._multocida_str._Pm70|272843|Trp|CCA            AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGCCTCTCCGCCCCTGCCA
tdbD11435|Photorhabdus_luminescens_subsp._laumondii_TTO1|243265|Trp|CCA              AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA
tdbD11444|Porphyromonas_gingivalis_W83|242619|Trp|CCA                                ACGGGTTTAGCTCAGTT-GGT-AGAGCATTGGTCTCCAAAACCAAGTGTCGGGAGTTCGAGTCTCTCAACCCGTG---
tdbD11456|Propionibacterium_acnes_KPA171202|267747|Trp|CCA                           AGGGCACTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCAAGTCCCTCGTGCCCTG---
tdbD11314|Pseudomonas_aeruginosa_PAO1|208964|Trp|CCA                                 AGGCCAGTAGCTCAATT-GGC-AGAGCGGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGATTCCCTCCTGGCCTGCCA
tdbD11426|Pseudomonas_syringae_pv._tomato_str._DC3000|223283|Trp|CCA                 AGGTCAGTAGCTCAATT-GGC-AGAGCGACGGTCTCCAAAACCGTAGGTTGGGGGTTCGATTCCCTCCTGACCTGCCA
tdbD11333|Ralstonia_solanacearum_GMI1000|267608|Trp|CCA                              AGGGGTATAGCTCAACT-GGC-AGAGCGTCGGTCTCCAAAACCGAAGGTTGGGGGTTCGATTCCCTCTGCCCCTGCCA
tdbD11421|Rhodopirellula_baltica_SH_1|243090|Trp|CCA                                 AGGGGCGTAGCTCAATT-GGC-AGAGCACTGGTTTCCAAAACCAGCGGTTGTGAGTTCGACTCTCGCCGCCCCTG---
tdbD11436|Rhodopseudomonas_palustris_CGA009|258594|Trp|CCA                           AGGAGTGTAGCTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGGGTCGCAGGTTCGAGCCCTGCCACTCCTGCCA
tdbD11328|Rickettsia_conorii_str._Malish_7|272944|Trp|CCA                            AGGAGTGTAGCTCAATT-GGT-AGAGCGCCGGTCTCCAAAACCGGAGGTTGCGGGTTCGATACCTGTCGCTCCTGCCA
tdbD11373|Rickettsia_prowazekii_str._Madrid_E|272947|Trp|CCA                         AGGAGTGTAGCTCAATT-GGT-AGAGCGCCGGTCTCCAAAACCGGAGGTTGCGGGTTCGATTCCTGTCGCTCCTGCCA
tdbD11445|Rickettsia_typhi_str._Wilmington|257363|Trp|CCA                            AGGAGTGTAGCTCAATT-GGT-AGAGTGCCGGTCTCCAAAACCGGAGGTTGCGGGTTCGATTCCTGTCGCTCCTGCCA
tdbD11337|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|220341|Trp|CCA AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA
tdbD11420|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|209261|Trp|CCA  AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA
tdbD11332|Salmonella_typhimurium_LT2|99287|Trp|CCA                                   AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA
tdbD11392|Shewanella_oneidensis_MR-1|211586|Trp|CCA                                  AGGGGTGTAGTTCCAATTGGT-AGAACAGCGGTCTCCAAAACCGATGGTTGCGGGTTCGAGTCCTGCCACCCCTGCCA
tdbD11393|Shigella_flexneri_2a_str._301|198214|Trp|CCA                               AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTG---
tdbD11338|Sinorhizobium_meliloti_1021|266834|Trp|CCA                                 AGGGGTATAGCTCAGTT-GGT-AGAGCGGCGGTCTCCAAAACCGCAGGTCGGGGGTTCGAGCCCCTCTGCCCCTGCCA
tdbD3281|Spiroplasma_citri|2133|Trp|TCA                                              AGGGGTATAGTTCAATC-GGT-AGAACACCGGACTTCAAATCCGGGTGTTGTGGGTTCAAGTCCTGCTACCCCTGCCA
tdbD11437|Staphylococcus_aureus_subsp._aureus_MRSA252|282458|Trp|CCA                 AGGGGCATAGTTCAAC--GGT-AGAATAGAGGTCTCCAAAACCTTTGG-TGTGGGTTCGATTCCTACTGCCCCTGCCA
tdbD11375|Staphylococcus_aureus_subsp._aureus_MW2|196620|Trp|CCA                     AGGGGCATAGTTCAAC--GGT-AGAATAGAGGTCTCCAAAACCTTTGG-TGTGGGTTCGATTCCTACTGCCCCTGCCA
tdbD11296|Staphylococcus_aureus_subsp._aureus_N315|158879|Trp|CCA                    AGGGGCATAGTTCAAC--GGT-AGAATAGAGGTCTCCAAAACCTTTGG-TGTGGGTTCGATTCCTACTGCCCCTGCCA
tdbD11406|Staphylococcus_epidermidis_ATCC_12228|176280|Trp|CCA                       AGGGGCATAGTTCAAC--GGT-AGAATAGAGGTCTCCAAAACCTTTGA-TGTGGGTTCGATTCCTACTGCCCCTGCCA
tdbD11395|Streptococcus_agalactiae_2603V/R|208435|Trp|CCA                            ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCGATTCCTACTGCCCGTG---
tdbD11376|Streptococcus_agalactiae_NEM316|211110|Trp|CCA                             ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCGATTCCTACTGCCCGTG---
tdbD11396|Streptococcus_mutans_UA159|210007|Trp|CCA                                  ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCAATTCCTACTGCCCGTG---
tdbD11326|Streptococcus_pneumoniae_TIGR4|170187|Trp|CCA                              ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCAATTCCTACTGCCCGTG---
tdbD11325|Streptococcus_pyogenes_M1_GAS|160490|Trp|CCA                               ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCGATTCCTACTGCCCGTG---
tdbD11377|Streptococcus_pyogenes_MGAS315|198466|Trp|CCA                              ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCGATTCCTACTGCCCGTG---
tdbD11412|Streptococcus_pyogenes_SSI-1|193567|Trp|CCA                                ACGGGCATAGTTTAAA--GGT-AGAACTAAGGTCTCCAAAACCTTCAG-TGTGGGTTCGATTCCTACTGCCCGTG---
tdbD11419|Streptomyces_avermitilis_MA-4680|227882|Trp|CCA                            AGGGTCGTAGCTCAATT-GGT-AGAGCACTGGTCTCCAAAACCAGCGGTTGGGGGTTCAAGTCCCTCCGGCCCTG---
tdbD11391|Streptomyces_coelicolor_A3(2)|100226|Trp|CCA                               AGGGTCGTAGCTCAATT-GGT-AGAGCACTGGTCTCCAAAACCAGCGGTTGGGGGTTCAAGTCCCTCCGGCCCTG---
tdbD3285|Streptomyces_griseus|1911|Trp|CCA                                           AGGGTCGTAGCTCAATT-GGT-AGAGCACTGGTCTCCAAAACCAGCGGTTGGGGGTTCAAGTCCCTCCGGCCCTG---
tdbD11446|Symbiobacterium_thermophilum_IAM_14863|292459|Trp|CCA                      AGGGGCATAGCTCAATT-GGT-AGAGCAACGGTCTCCAAAACCGTAGGTTGTGGGTTCGAGTCCTACTGCCCCTGCCA
tdbD11315|Synechocystis_sp._PCC_6803|1148|Trp|CCA                                    GCGTCCTTAGTTCAGTT-GGT-AGAACGCAGGTCTCCAAAACCTGATGTCGGGGGTTCAAGTCCTCCAGGGCGCG---
tdbD11380|Thermoanaerobacter_tengcongensis_MB4|273068|Trp|CCA                        AGGGGAGTAGCTCAACT-GGT-AGAGCAACGGTCTCCAAAACCGTGGGCTGCGGGTTCAAGTCCTGTCTCCCCTGCCA
tdbD11378|Thermosynechococcus_elongatus_BP-1|197221|Trp|CCA                          GCGTCCTTAGTTCAGTT-GGT-AGAACGTCGGTCTCCAAAACCGGATGTCGGGGGTTCGAGTCCTCCAGGGCGCG---
tdbD11316|Thermotoga_maritima_MSB8|243274|Trp|CCA                                    AGGGCCGTAGCTCAACT-GGT-AGAGCGCCGGTCTCCAAAACCGGTGGTTGCGGGTTCGAGTCCTGCCGGCCCTGCCA
tdbD11457|Thermus_thermophilus_HB27|262724|Trp|CCA                                   -GGCCGTTAGCTCAACT-GGC-AGAGCACCGGTCTCCAAAACCGGGGGTTGGAGGTTCGAGTCCTTCACGGCCCGCCA
tdbD11458|Treponema_denticola_ATCC_35405|243275|Trp|CCA                              AGGTCAGTAGCTCCAAT-GGT-AGAGCGTCGGTCTCCAAAACCGAATGTTGAGGGTTCGAGTCCTTCCTGGCCTG---
tdbD11313|Treponema_pallidum_subsp._pallidum_str._Nichols|243276|Trp|CCA             GGGTCAGTAGCTCTAAT-GGC-AGAGCGTCGGTCTCCAAAACCGAATGTTGAAGGTTCGAGTCCTTCCTGGCCTG---
tdbD11407|Tropheryma_whipplei_str._Twist|203267|Trp|CCA                              AGGGCGGTGGCTCAATT-GGT-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTCCGCCCTG---
tdbD11408|Tropheryma_whipplei_TW08/27|218496|Trp|CCA                                 AGGGCGGTGGCTCAATT-GGT-AGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTCCGCCCTG---
tdbD11298|Ureaplasma_parvum_serovar_3|38504|Trp|CCA                                  AAGGGTATAGTTCAATT-GGT-AGAACAGCAGACTCCAAATCTGCGTGTTGCGGGTTCGAGTCCTGTTACCCTTGCCA
tdbD11295|Vibrio_cholerae_O1_biovar_El_Tor_str._N16961|243277|Trp|CCA                AGGGGTGTAGCTCCAATTGGC-AGAGCAGCGGATTCCAAATCCGCGTGTTGGGAGTTCGAATCTCTCCACCCCTGCCA
tdbD11459|Wolbachia_endosymbiont_of_Drosophila_melanogaster|163164|Trp|CCA           AGGAGTGTAGCTCAATT-GGT-AGAGCGCTGGTCTCCAAAACCAGAGGTTGTAGGTTCAATTCCTATCGCTCCTG---
tdbD11382|Xanthomonas_axonopodis_pv._citri_str._306|190486|Trp|CCA                   ACGCCAGTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCTCCTGGCGTGCCA
tdbD11381|Xanthomonas_campestris_pv._campestris_str._ATCC_33913|190485|Trp|CCA       ACGCCAGTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCTCCTGGCGTGCCA
tdbD11317|Xylella_fastidiosa_9a5c|160492|Trp|CCA                                     GCGTCAGTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCTCCTGGCGCGCCA
tdbD11409|Xylella_fastidiosa_Temecula1|183190|Trp|CCA                                GCGTCAGTAGCTCAATT-GGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCTCCTGGCGCGCCA
tdbD11448|Yersinia_pestis_biovar_Microtus_str._91001|229193|Trp|CCA                  AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA
tdbD11331|Yersinia_pestis_CO92|214092|Trp|CCA                                        AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA
tdbD11384|Yersinia_pestis_KIM|187410|Trp|CCA                                         AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA
tdbD11449|Yersinia_pseudotuberculosis_IP_32953|273123|Trp|CCA                        AGGGGCGTAGTTCAATT-GGT-AGAGCACCGGTCTCCAAAACCGGGTGTTGGGAGTTCGAGTCTCTCCGCCCCTGCCA
#=GC SS_cons                                                                         (((((((..((((..........)))).(((((.......))))).....(((((.......))))))))))))....
#=GC SN                                                                              0000000..1111..........1111.22222.......22222.....33333.......333330000000....

#=GF CS                                                                              78 columns, 21 paired, 20 covariant; 4 stems
//