# STOCKHOLM 1.0 MAMMALIA V #=GF AU Infernal 1.0.1 #=GC CS .243343..2................2.33332.......23333.....63456............65436343342.. #=GC BP +++++++..++++..........++++.+++++.......+++++.....+++++............++++++++++++. NC_004920_V_1024_1091_p CAAAGUGUAGCUUAAAUA-....AAGCAUCUGGCUUACACCCAGAAGAU.UUCAA..CU..CA..CACUGACCACUUUGA NC_010304_V_1023_1088_p CAAAGUGUAGCUUAACUA-....AAGCAUCUGGUCUACGCCCAGAAGAU.UUCAA..UC..--..AUAUGACCACUUUGA NC_010301_V_1022_1089_p CAAAGUGUAGCUUAACAUA....AAGCACCUGGCCUACGCCCAGAAGAU.UUCAA..CC.cCA..--UUGACCACUUUGA NC_004919_V_1028_1095_p CAAAGUGUAGCUUAACAUA....AAGCACCUGGCCUACACCCAGAAGAU.UUCAA..CC.cCA..--UUGACCACUUUGA NC_004921_V_1028_1093_p CAAAGCGUAGCUUAACCA-....AAGCACCUGGCCUACACCCAGAAGAU.UUCAU..UA..--..AUAUGACCGCUUUGA NC_004026_V_1023_1088_p CAAAGUGUAGCUUAUACA-....AAGCACCUGGUUUACACCCAGAAGAU.UUCAU..UU..AC..--AUGACCACUUUGA NC_005129_V_1032_1099_p CAAAGUGUAGCUUAACAAA....AAGCAUCUGGCCUACACCCAGAAGAC.CUCAU..UU.aCA..--AUGAUCACUUUGA NC_000934_V_1032_1099_p CAAAGUGUAGCUUAACAAA....AAGCAUCUGGCUUACACCUAGAAGAC.CUCAU..UU.aCA..--AUGAUCACUUUGA NC_009574_V_1033_1100_p CAAAGUGUAGCUUAAUAAA....AAGCAUCUGGCCUACACCUAGAAGAU.CUCAU..UU.aCA..--AUGAUCACUUUGA NC_007596_V_1032_1099_p CAAAGUGUAGCUUAACAAA....AAGCAUCUGGCUUACACCUAGAAGAC.CUCAU..UC.aC-..-AAUGAUCACUUUGA NC_003314_V_1027_1094_p CAAAGUGUAGCUUAACAUA....AAGCGCCUGGCCUACACCCAGGAGAU.UUCAC..AC.gCA..--CUGACCACUUUGA NC_010302_V_1030_1097_p CAAAGUGUAGCUUAACAUA....AAGCGCCUGGCCUACACCCAGAAGAU.UUCAU.gUU..CA..--UUGACCACUUUGA NC_002631_V_1023_1088_p CAAAACGUAGCUUAAUAA-....AAGCAUCUGGCCUACACCCAGAAGAU.UUCAU..--..GA..CACUGACCGUUUUGA NC_002078_V_1024_1093_p CAAAGUGUAGCUUAAACAU...aAAGCAUCUGGCCUACACCCAGAAGAU.UUCAA..UA..AC..CAAUGACCACUUUGA NC_004031_V_1036_1102_p CAAAGUGUAGCUUAACCUA....AAGCACCCGGCCUACACCCGGAAGAU.UUCAU..UC..AA..--CUGACCACUUUGA NC_004028_V_1024_1089_p CAGAGUGUAGCUUAACUUA....AAGCACUUGGCUUACACCCGAGAGAU.UUCAU..UC..--..-UAUGACCACUCUGA NC_001913_V_1027_1092_p CAGAGCGUAGCUUAACUUA....AAGCACUUGGCUUACACCCAAGAGAU.UUCAU..UU..-A..--CUGACCACUCUGA NC_003033_V_1033_1100_p CAAAGCGUAGCUUAACUA-....AAGCAUCUGACUUACACUCAGAAGAU.UUCAC..AU..UA..UCGUGACCACUUUGA NC_011029_V_1035_1102_p CAAAGCGUAGCUUAACUA-....AAGCAUCUGACUUACACUCAGAAGAU.UUCAC..AA..CA..UCGUGACCACUUUGA NC_005358_V_1032_1099_p CAAAGCGUAGCUUAACCA-....AAGCAUCUGACUUACACUCAGAAGAU.UUCAC.aUU.g--..UCGUGACCACUUUGA NC_000884_V_1009_1077_p CAAAGUGUAGCUUAAAUUA....AAGCAUCCGGCUUACACCCGGAAGAU.UUCAG..CC..AC..CAUUGACCACUUUGA NC_002658_V_1041_1107_p CAAAACGUAGCUUAAAUA-....AAGCAUCUAGCUUACACCUAGAAGAC.UUCAA..UU.cAA..--AUGAACGCUUUGA NC_009056_V_1031_1096_p CCAAAUGUAGCUUAAACAU...aAAGCAUCUGGCCUACACCCAGAAGAU.UUCGC..--..A-..-CCCGAACAUUUUGA NC_005314_V_1034_1101_p CAAAACGUAGCUUAACAA-....AAGCACCUGGCUUACACCCAGGAGAU.UUCCC..UU.cAA..-AAGGAACGUUUUGA NC_001892_V_1021_1088_p CAAAAUGUAGCUUAACCAA....AAGCAUCUGGCUUACACCCAGAAGAU.UUUAU.gUU..--..AUAUAAACAUUUUGA NC_013571_V_1019_1089_p CAUGGUGUAGCUUAAACACc.caAAGCAUCUGGCCUACACCCAGAAGAU.UUCAC..AG.uCA..--AUGGACAUCAUGA NC_003041_V_1018_1087_p CAUCAUGUAGCUUAACUAAc..aAAGCAUCUGGCCUACACCCAGAAGAU.UCCAC..AA..-C..CAAUGGACAUCAUGA NC_008064_V_1020_1089_p CAUGAUGUAGCUUAACUAAc..aAAGCAUCUGGCCUACACCCAGAAGAC.UCCAC..AA..-C..CAAUGGACGUCAUGA NC_013563_V_1018_1087_p CAUGGCGUAGCUUAAUCAAc.aaAAGCAUCUGGCCUACACCCAGAAGAC.UUCAA..--..AC..CAAUGGACACCAUGA NC_007936_V_1024_1095_p CAUAACGUAGCUUAAAUACaauaAAGCAUCUGGUCUACACCCAGAAGAU.UCCUA..AC.uCA..--CCGGACAUUAUGA NC_013276_V_1029_1100_p CAUAAGGUAGCUUAAACCCcauaAAGCAUCUGGUCUACACCCAGAAGAU.UCCAC..AU.cCA..--AUGGACAUUAUGA NC_013068_V_12209_12280_p CAUAAAGUAGCUUAAGCCCcauaAAGCGUCUGGUCUACACCCAGAGGAU.UCCAC..--..AA.cCGUUGGACAUUAUGA NC_005089_V_1025_1093_p CAUAGUGUAGCUUAAUAUU...aAAGCAUCUGGCCUACACCCAGAAGAU.UUCAU..--.gAC..CAAUGAACACUCUGA NC_012387_V_1025_1093_p CAUAGUGUAGCUUAAUAUU...aAAGCAUCUGGCCUACACCCAGAAGAU.UCCAU..--.gAU..CAAUGGACACUCUGA NC_006914_V_1025_1093_p CAUAGUGUAGCUUAAUAUU...aAAGCAUCUGGCCUACACCCAGAAGAU.UUCAU..--.gAC..CAAUGAACACUCUGA NC_006915_V_1025_1093_p CAUAGUGUAGCUUAAUAUU...aAAGCAUCUGGCCUACACCCAGAAGAU.UUCAU..--.gAC..CAAUGGACACUCUGA NC_010339_V_1025_1093_p CAUAGUGUAGCUUAAUAUU...aAAGCAUCUGGCCUACACCCAGAAGAU.UUCAU..--.gAC..CAAUGGACACUCUGA NC_010650_V_1021_1089_p CAUAGUGUAGCUUAAUACU...aAAGCAUCUGGCCUACACCCAGAAGAA.UUCAU..--.gAC..UAAUGAACACUCUGA NC_012389_V_1026_1092_p CACAGUGUAGCUUAAUUUA....AAGCAUCUGGCUUACACCCAGAAGAA.UUCAU..--..AA..AGAUGAACACUUUGA NC_001665_V_1026_1093_p CACAGUGUAGCUUAAUCAC...aAAGCAUCUGGCCUACACCCAGAAGAA.UUCAU..--..AA..AAAUGAACACUUUGA NC_012461_V_1031_1098_p CACAGUGUAGCUUAAUUAC...aAAGCAUCUGGCCUACACCCAGAAGAA.UUCAU..--..AA..AAAUGAACACUUUGA NC_012374_V_1026_1093_p CACAGUGUAGCUUAACUAC...aAAGCAUCUGGCCUACACCCAGAAGAA.UUCAU..--..AA..AAAUGAACACUUUGA NC_011638_V_1026_1093_p CACAGUGUAGCUUAAUCAC...aAAGCAUCUGGCCUACACCCAGAAGAA.UUCAU..--..AA..AAAUGAACACUUUGA NC_005315_V_1025_1090_p CAAAGCGUAGCUUAUAUA-....AAGCAUCUGGCCUACACCCCGAAGAU.UCCAU..--..CA..CCAAGGACGCUCUGA NC_002369_V_1034_1102_p CAAGAUAUAGCUUAACAAAu.uaAAGCUCCCGGCUUACACCCGGAAGAU.UUCA-..--..AC..CCAUGAAUAUCUUGA NC_007009_V_1025_1093_p CAAGGCAUAGCUUAACGCA....AAGCAUCCGGCCUACACCCGGAAGAU.CUCAG..UA.cAA..-CUCGAUUACCUUGA NC_009747_V_1024_1092_p CAAGGUAUAGCUUAACGCA....AAGCAUCCGGCCUACACCCGGAAGAU.CUCAG..UA.cAA..-CUCGAUUACCUUGA NC_008066_V_1605_1673_p CAAGGUAUAGCUUAACGCA....AAGCAUCCGGCCUACACCCGGAAGAU.CUCAG..UA.cAA..-UUUGACUACCUUGA NC_009748_V_1019_1088_p CAAGGUAUAGCUUAACACU...aAAGCAUCCGACCUACACCCGGAAGAU.CUCAG..UA.cAA..-CUCGAUUACCUUGA NC_005943_V_1555_1623_p CAAGGCAUAGCUUAAUAUA....AAGCACCUGGCCUACACCCAGAAAAU.CUCAA..UAccA-..-CUUGAUUGCCUUGA NC_002764_V_1019_1087_p CAAGGCAUAGCUUAAAAUA....AAGCACCUGGCUUACACCCAGAAAAU.CUCAA..UAccA-..-CUUGAUUGCCUUGA NC_006901_V_1017_1085_p CAAGACAUAGCUCAACAUA....AAGCAUCCGGCUUACACCCAGAAGAU.AUCAA..CC..AU..AUUUGAUUGUCUUGA NC_008216_V_1021_1089_p CAAGGCAUAGCUCAAUAUA....AAGCAUCCAGUUUACACCCGGAAGAC.AUCAA..CA.c-U..AUUUGAUUGCCUUGA NC_008219_V_1019_1087_p CAAGGCAUAGCUCAAUACA....AAGCAUCCGGCUUACACCCAGAAGAC.AUCAAcaU-.uAC..--UUGAUUGCCUUGA NC_008217_V_1021_1089_p CAAGGUAUAGCUCAACACA....AAGCAUCCAGCUUACACCCGGAAGAC.AUCAA..CAccA-..-CCUGAUUACCUUGA NC_008220_V_1020_1085_p CAAGGCAUAGCUCAACACA....AAGCAUCCAGCUUACACCCGGAAGAU.AUCGC..UA..--..-CCUGAUUGCCUUGA NC_008218_V_1021_1089_p CAAGGCAUAGCUCAACAUA....AAGCAUCCAGCUUACACCCGGAAGAU.AUCAA..UAuuA-..-CCCGAUUGCCUUGA NC_008215_V_1019_1087_p CAAGGCAUAGCUCACGACA....AAGCAUCCGGCUUACACCCGGAAGAC.AUCAA..CA..CC..UCUUGAUUGCCUUGA NC_006900_V_1020_1088_p CAAGGUAUAGCUCAAUACA....AAGCAUCCUGCUUACACCCGGAAGAU.AUCAA.cAU.cAC..--UUGAUUACCUUGA NC_001645_V_1021_1089_p CAGAGUGUAGCUUAACACA....AAGCACCCAACUUACACUUAGGAGAU.UUCAA..CU.cAA..-CUUGACCGCUCUGA NC_011120_V_1022_1090_p CAGAGUGUAGCUUAACACA....AAGCACCCAACUUACACUUAGGAGAU.UUCAA..CU.cAA..-CUUGACCGCUCUGA NC_012920_V_1602_1670_p CAGAGUGUAGCUUAACACA....AAGCACCCAACUUACACUUAGGAGAU.UUCAA.cUU..AA..-CUUGACCGCUCUGA NC_011137_V_1598_1666_p CAGAGUGUAGCUUAACACA....AAGCACCCAACUUACACUUAGGAGAU.UUCAA.cUU..AA..-CUUGACCGCUCUGA NC_001644_V_1022_1090_p CAGAGUGUAGCUUAACAUA....AAGCACCCAACUUACACUUAGGAGAU.UUCAA..CU.cAA..-CUUGACCACUCUGA NC_001643_V_1021_1089_p CAGAGUGUAGCUUAACAUA....AAGCACCCAACUUACACUUAGGAGAU.UUCAA..CU.cAA..-CUUGACCACUCUGA NC_002083_V_1026_1094_p CAGAGGGUAGCUUAACACA....AAGCACCCGGCUUACACCUGGGAGAU.UUCAA..UU.cAA..-CCUGGCCCCUCUGA NC_001646_V_1025_1093_p CAGAGAGUAGCUUAAUACA....AAGCACCCGGCUUACACCUGGGAGAU.UUCAA..UU.cAA..-CCUGACCCCUCUGA NC_002082_V_1021_1088_p CAAGGUGUAGCUUAACACA....AAGCACCCGGCUUACACCCGGGAGAU.UUCAA..UU.aA-..-CUUGACCACCCUGA NC_002763_V_1029_1096_p CAAAGUGUAGCUUAAAUUA....AAGCAUCUGGCCUACACCCAGAAGAU.CUCAC..AA.cAA..--CCGAUCACUUUGA NC_012775_V_1025_1092_p CAAAGUGUAGCUUAAAACA....AAGCACCCGGCCUACACCCGGAAGAU.CUCAA..AA.uAA..--UUGAUCACUUUGA NC_002811_V_1026_1090_p CAAAGUGUAGCUUAAUCCA....AAGCAACCGGCUUACACCCGGAAGAU.UUCAU..--..AA..--AUGACCACUUUGA NC_012774_V_1026_1092_p CAAAGUGUAGCUUAAGCCAc..aAAGCACCCGGCUUACACCCGGAAGAU.UUCAC..--..AA..--AUGACCACUUUGA NC_010299_V_1039_1106_p 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CAAAGUGUAGCUUAAAUAA....AAGCACCAGGCUUACACCCAGGAGAU.UUCAA..CU.aAA..--CAGACCACUUUGA NC_004032_V_1028_1094_p CAAAGUGUAGCUUAAACAA....AAGCACCUGGCUUACACCCAGAAGAU.UUCAC..UU..--..AUUAGACCACUUUGA NC_007630_V_1021_1088_p CAAAAUGUAGCUUAAUUA-....AAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..CU..AA..UCCUGACCAUUUUGA NC_006523_V_1025_1092_p CAAAACGUAGCUUAAAUA-....AAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..CU..AA..CCCUGACCGUUUUGA NC_007631_V_1024_1091_p CAAAAUGUAGCUUAACUA-....AAGCAUUUAGCCUACACCUAAAAGAU.UUCAG..CU..AA..CCCUGACCAUUUUGA NC_006517_V_1023_1090_p CAAAAUGUAGCUUAAACA-....AAGCAUUUAGCCUACACCUAAAAGAU.UUCAG..CU..AA..CCCUGACCAUUUUGA NC_011949_V_1191_1259_p CAAAAUGUAGCUUAAAUCA....AAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..CU..CA..UACUGACCAUUUUGA NC_011944_V_1963_2030_p CAAAAUGUAGCUUAAAUA-....AAGCAUUUAGCUUACACCUAAAAGAU.UUCAG.cUU..-A..UACUGACCAUUUUGA NC_001610_V_1024_1095_p CAAAAUGUAGCUUGAUUUAu.uaAAGCAUUUAGUUUACACCUAAAAGAU.UUCAG..UC.uA-..AUCUGACCAUUUUGA NC_006299_V_1028_1098_p CAAAAUGUAGCUUAACUACu..aAAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..UU..AA..UUCUGACCAUUUUGA NC_008145_V_1025_1093_p CAAAAUGUAGCUUAACAUU...aAAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..UU.aAA..--CUGACCAUUUUGA NC_008136_V_1022_1090_p CAAAAUGUAGCUUAAUAUA....AAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..CU..AA..UCCUGACCAUUUUGA NC_008447_V_1020_1088_p CAAAAUGUAGCUUAAUCCA....AAGCAUUUAGCUUACGCCUAAAAGAU.UUCAG..CU..AA..CCCUGACCAUUUUGA NC_001794_V_1021_1089_p CAAAAUGUAGCUUAACAUA....AAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..CU..AA..UCCUGACCAUUUUGA NC_008134_V_1020_1087_p CAAAAUGUAGCUUAAUACA....AAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..AU.aAA..--CUGACCAUUUUGA NC_008135_V_1024_1092_p CAAAAUGUAGCUUAAUCCA....AAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..CU..AA..UACUGACCAUUUUGA NC_003039_V_1017_1085_p CAAAAUGUAGCUUAUAAUA....AAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..UU..AA..UACUGACCAUUUUGA NC_008133_V_1022_1090_p CAAAAUGUAGCUUAAACAA....AAGCAUUUAGCCUACACCUAAAAGAC.UUCAG.c-U..UA..CCCUGACCAUUUUGA NC_006524_V_1023_1091_p CAAAAUGUAGCUUAAUACA....AAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..CU..AA..CCCUGACCAUUUUGA NC_006518_V_1023_1091_p CAAAAUGUAGCUUAAUACA....AAGCACUUAGCUUACACCUAAGAGAAuUCAG-..CC.uAA..CC-CUGACAUUUUGA NC_003322_V_1032_1100_p CAAAAUGUAGCUUAACAUA....AAGCAUUUAGCCUACACCUAAAAGAU.UUCAG..UU..AG..CCCUGACCAUUUUGA NC_005828_V_1029_1098_p CAAAAUGUAGCUUAAAUAA....AAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..UU.uAA..UUCUGACCAUUUUGA NC_005829_V_1030_1098_p CAAAAUGUAGCUUAUAUUA....AAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..UU..AA..CCCUGACCAUUUUGA NC_002746_V_1021_1089_p CAAAAUGUAGCUUAAAACA....AAGCAUUUAGCUUACACCUAAAAGAU.UUCAG..CU..AA..CCCUGACCAUUUUGA NC_007632_V_1025_1093_p CAAAAUGUAGCUUAAAYYA....AAGCAUUUAGCUUACACCUAAARGAU.UUCAG..UU..AA..UUCUGACCAUUUUGA NC_000891_V_1016_1081_p CAAAAUGUAGCUUAAUCCA....AAGCACUCAGCUUACACCUGAAAGAU.AUUUU..--..-A..CAUAAAUCAUUUUGA NC_003321_V_1013_1079_p CAAAAUGUAGCUUAACCCA....AAGCACUCAGCUUACACCUGAAAGAU.AUUUA..UC..AC..--AAAAUCAUUUUGA NC_006364_V_1014_1080_p CAAAAUGUAGCUUAACCCA....AAGCAUUCAGCUUACACCUGAAAGAU.GUUUA..UC..AC..--AAAAUCAUUUUGA #=GC SS_cons (((((((,,<<<<______....>>>>,<<<<<_______>>>>>,,,,.<<<<<..__..__..__>>>>>))))))): #=GC RF caAaAuaUAgcuuAAuuaa....aagcAuuucauUUACAcugaaaAGAU.gucug..Uu..AA..aUcagacuaUuUugA #=GC SN 0000000..1111..........1111.22222.......22222.....33333............333330000000. #=GF CS 80 columns, 21 paired, 17 covariant; 4 stems //