# STOCKHOLM 1.0          MAMMALIA S2
#=GF AU Infernal 1.0.1
#=GC CS                  332233...5322.......2235.33223.......32233.......333.........333..332233.
#=GC BP                  +++++++..n++e.......e++n.+++++.......+++++......+++++.......++++++++++++.
NC_004920_S2_6866_6934_m AAGAAAGUCAUAG..UGGUUAUGGGAUUGGCUUGAAACCAGUUU..AUGGGGGUUCGAUUCCUUCCUUUCUUG
NC_010304_S2_6855_6923_m AAGAAAGUCAUAG..UGGUUAUGGGAUUGGCUUGAAACCAGUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_010301_S2_6864_6932_m GAGAAAGUCAUAA..AGGUUAUGUGGUUGGCUUGAAACCAAUUA..UUGGGGGUUCAAUUCCUUCCUUUCUUA
NC_004919_S2_6874_6942_m GAGAAAGUCAUAA..AGGUUAUGUGGUUGGCUUGAAACCAAUUA..UUGGGGGUUCAAUUCCUUCCUUUCUUA
NC_004921_S2_6849_6917_m AAGAAAGUUGUAG..UGGUUACGUGGUUGGCUUGAAACCAAUUA..UUGGGGGUUCGAUUCCUUCCUUUCUUG
NC_004026_S2_6856_6924_m AAGAAAGUUGUAG..AGGUUACAUGGUUGGCUUGAAACCAACUG..UAGGAGGUUCAAUUCCUCCCUUUCUUG
NC_005129_S2_6872_6939_m GAGAAGGCAUAAA...GGUUAUAGAGUUGGCUUGAAACUAACUG..UUGGAGGUUCGAUUCCUUCCCUUCUCG
NC_000934_S2_6872_6939_m GGGAAGGCAUAAA...GGUUAUAGAGUUGGCUUGAAACUAACUG..UUGGAGGUUCGAUUCCUUCCCUUCUCG
NC_009574_S2_6875_6942_m GGGAAGGCAUAGA...GGCUAUAGAGUUGGCUUGAAACUAACUG..UUGGAGGUUCGAUUCCUUCCCUUCUCG
NC_007596_S2_6874_6941_m GAGAAGGCAUAAA...GGUUAUAGAGUUGGCUUGAAACUAACUG..UUGGAGGUUCGAUUCCUUCCCUUCUCG
NC_003314_S2_6871_6939_m GAGAGAGUCAUAA..AGGUUAUGGGGUUGGCUUGAAACCAGCUU..UAGGGGGUUCAAUUCCUUCCUUUCUCG
NC_010302_S2_6880_6948_m GGGAAAGUCAUAG..AGGUUAUGGGAUUGGCUUGAAACCAAUCU..UAGGGGGUUCGAUUCCUUCCUUUCUCG
NC_002631_S2_6886_6955_m AAGAAAGUCGUag..AGGUUACGGAGUUGGCUUGAAACUAAUUU.uUUGGGGGUUCGAUUCCUUCCUUUCUUG
NC_002078_S2_6885_6953_m GAGAAAGUGAUaa..UGGUUAUUAAGUUGGCUUGAAACCAUCAU..UUGAAGGUUCGAUUCCUUCCUUUCUUA
NC_004031_S2_6888_6956_m GGGAAAGUCAUAG..GGGCUAUGGGGUUGGCUUGAAACCAUCUU..UGGAGGGUUCAACUCCUUCCUUUCUCG
NC_004028_S2_6889_6957_m GAGAAAGUCAUAA..UGGUUAUGCGGCUGGCUUGAAACCAGUCU..UAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_001913_S2_6898_6966_m AAGAAAGUCAUAG..UGGCUAUGGGGCUGGCUUGAAACCAGUUU..UAGGAGGUUCGAUUCCUUCCUUUCUUG
NC_003033_S2_6880_6948_m AAGAAAGUCAUAG..AGGCUAUGUGGUUGGCUUGAAACCAAUUA..AUGGGGGUUCGAUUCCUUCCUUUCUUG
NC_011029_S2_6882_6950_m AAGAAAGUCAUAG..AGGUUAUGUGGUUGGCUUGAAACCAAUUG..AUGGGGGUUCGAUUCCUUCCUUUCUUG
NC_005358_S2_6877_6945_m AAGAAAGUCAUAA..GGGUUAUGUGGUUGGCUUGAAACCAAUUA..AUGGGGGUUCGAUUCCUUCCUUUCUUG
NC_000884_S2_6873_6941_m AAGAGGGUCAUAA..AGGUUAUGGGGUUGGCUUGAAACCAGCUU..UAGGGGGUUCAAUUCCUUCCUCUCUUG
NC_002658_S2_6902_6970_m AAGAAAGUCAUAG..AGGUUAUGGGGCUGGCUUGAAACUAGUUU..UUGAAGGUUCGAGUCCUUCCUUUCUUG
NC_009056_S2_6887_6955_m GAGAAAGACAUaa..UGGCUAUGGGGCUGGCUUGAAACUAGUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_005314_S2_6892_6960_m GAGAAAGACAUaa..AGGUUAUGGUGCUGGCUUGAAACCAGUGA..CAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_001892_S2_6877_6946_m AAGAAAGAUUAUaa.AGGUUAUAGGGCUGGCUUGAAACUAGCUU..UAGGGGGUUCAAUUCCUUCCUUUCUUG
NC_013571_S2_6850_6918_m GAGAAAGACAUAG..AGGUUAUGGUGCUGGCUUGAAACCAGUUU..UAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_003041_S2_6842_6910_m GAGAAAGACAUAG..AGGUUAUGGUGCUGGCUUGAAACCAGUUU..UAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_008064_S2_6844_6912_m GAGAAAGACAUAG..AGGUUAUGGUGCUGGCUUGAAACCAGUUU..UAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_013563_S2_6844_6912_m AAGAAAGACAUAG..AGGUUAUGAUGCUGGCUUGAAACCAGUUU..UAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_007936_S2_6852_6920_m GAGAAAGACAUAG..AGGUUAUGGAGUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_013276_S2_6856_6924_m GAGAGAGACAUAG..AGGUUAUGGAGUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAAUCCUUCCUUUCUCA
NC_013068_S2_1543_1611_m GAGAAAGACAUAG..AGGUUAUGGAGUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_005089_S2_6870_6938_m GAGAAAGACAUAU..AGGAUAUGAGAUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_012387_S2_6871_6939_m GAGAAAGACAUAU..AGGAUAUGAGAUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_006914_S2_6870_6938_m GAGAAAGACAUAU..AGGAUAUGAGAUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_006915_S2_6872_6940_m GAGAAAGACAUAU..AGGAUAUGAGAUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_010339_S2_6872_6940_m GAGAAAGACAUAU..AGGAUAUGAGAUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_010650_S2_6868_6936_m GAGAAAGACAUAU..AGGAUAUGGGGUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_012389_S2_6860_6928_m GAGAAAGACAUAG..UGGUUAUGAAAUUGGCUUGAAACCAGUUG..UAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_001665_S2_6865_6933_m GAGAAAGACAUaa..UGGUUAUGAAAUUGGCUUGAAACCAGUUG..UAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_012461_S2_6862_6930_m GAGAAAGACAUAG..UGGUUAUGAAAUUGGCUUGAAACCAGUUG..UAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_012374_S2_6858_6926_m GAGAAAGACAUAG..UGGUUAUGAAAUUGGCUUGAAACCAGUUG..UAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_011638_S2_6855_6923_m GAGAAAGACAUAG..UGGUUAUGAAAUUGGCUUGAAACCAGUUG..UAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_005315_S2_6868_6936_m AAGAAAGACAUAG..AGGUUAUGGUGUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_002369_S2_6897_6965_m AAGAGGGUCAUAA..UGGUUAUGGGGCUGGCUUGAAACUAGUCU..UAGGAAGUUCGAUUCUUUCCUUUCUUG
NC_007009_S2_6867_6935_m GAAAAAGUUAUAG..GGGCUAUAGGAUUGGCUUGAAACCGGUUU..UAGGGGGUUCGACUCCCUCCUUUUUCG
NC_009747_S2_6864_6932_m GAAAAAGUUAUAG..GGGCUAUGGGAUUGGCUUGAAACCGAUUU..UAGGGGGUUCGACUCCCUCCUUUUUCG
NC_008066_S2_7440_7508_m GAAAAAGUUAUAG..GGGUUAUAGGAUUGGCUUGAAACCGGUUU..UAGGGGGUUCGAUUCCCCCCUUUUUCG
NC_009748_S2_6861_6929_m GAAAAAGUUAUAG..GGGCUAUAGGAUUGGCUUGAAACCGGUUU..UAGGGGGUUCGACUCCCUCCUUUUUCG
NC_005943_S2_7391_7459_m GAAAAAGUUAUAG..GGGCUAUAAGAUUGGCUUGAAACCAGUUU..UAGGGGGUUCGACUCCCUCCUUUUUCG
NC_002764_S2_6870_6938_m GAAAAAGUUAUAA..GGGUUAUAAGACUGGCUUGAAACCAGUUC..UAGGGGGUUCGACUCUCUCCUUUUUCG
NC_001992_S2_6877_6945_m GAAAAAGUUAUAG..GGGCUAUAAGGCUGGCUUGAAACCAGUUU..UAGGGGGUUCGACUCCCUCCUUUUUCG
NC_006901_S2_6878_6946_m GAAAAAGUUAUAG..AGGCUAUAGAGCUGGCUUGAAACCAGCUU..CAGAAGGUUCGAUUCCUUCCUUUUUUA
NC_008216_S2_6871_6939_m GAAAAAGUUAUAG..GGGUUAUAGGAUUGGCUUGAAACCAGUUU..CAGGAGGUUCGAUUCCUUCCUUUUUUA
NC_008219_S2_6872_6940_m GAAAAAGUUAUAG..GGGCUAUAGAAUUGGCUUGAAACCAGUUU..CAGAGGGUUCAACUCCUUCCUUUUUUA
NC_008217_S2_6869_6937_m GAAAAAGUUAUAG..GGAUUAUAGGAUUGGCUUGAAACCAAUUU..CAGAGGGUUCGAUUCCUUCCUUUUUUG
NC_008220_S2_6852_6920_m GAAAAAGUUAUAG..AGGUUAUAGGAUUGGCUUGAAACCAGUCU..CAGGAGGUUCGAUUCCUUCCUUUUUUA
NC_008218_S2_6865_6933_m GAAAAAGUUAUAG..GGGUUAUAGGAUUGGCUUGAAACCAGUUU..CAGGAGGUUCGAUUCCUUCCUUUUUUA
NC_008215_S2_6865_6933_m GAAAAAGUUAUAG..GGGUUAUAGGGUUGGCUUGAAAUCAACUU..CAGAAGGUUCGAUUCCUUCCUUUUUUA
NC_006900_S2_6874_6942_m GAAAAAGUUAUAG..AGGAUAUAGAAUUGGCUUGAAACCAGUUU..CAGGAGGUUCGAUUCCUUCCUUUUUUA
NC_001645_S2_6867_6935_m GAAAAAGUCAUga..AGGUCAUGGGGUUGGCUUGAAACCAGCUU..UGGGGGGUUCGAUUCCUUCCUUUUUUG
NC_011120_S2_6868_6936_m GAAAAAGUCAUga..AGGUCAUGGGGUUGGCUUGAAACCAGCUU..UGGGGGGUUCGAUUCCUUCCUUUUUUG
NC_012920_S2_7446_7514_m GAAAAAGUCAUGG..AGGCCAUGGGGUUGGCUUGAAACCAGCUU..UGGGGGGUUCGAUUCCUUCCUUUUUUG
NC_011137_S2_7441_7509_m GAAAAAGUCAUGG..AGGCCAUGGGGUUGGCUUGAAACCAGCUU..UGGGGGGUUCGAUUCCUUCCUUUUUUG
NC_001644_S2_6864_6932_m GAAAAAGUCAUGG..GGGUCAUGGGGUUGGCUUGAAACCAGCUU..UAGGGGGUUCGAUUCCUUCCUUUUUUG
NC_001643_S2_6863_6931_m GAAAAAGUCAUGG..AGGUCAUGGGGUUGGCUUGAAACCAGCUU..UAGGGGGUUCGAUUCCUUCCUUUUUUG
NC_002083_S2_6884_6952_m GAAAAAGUCAUgg..AGGUUGUGGGGUUGGCUUGAAACCAGCUU..UAGGAGGUUCGAUUCCUUCCUUUUUUG
NC_001646_S2_6874_6942_m GAAAAAGUCAUGG..GGGUUAUGGGGUUGGCUUGAAACCAGCUU..UAGGAGGUUCGAUUCCUUCCUUUUUUG
NC_002082_S2_6864_6932_m GAAAAAGUCAUAG..AGGUUAUGGGGCUGGCUUGAAACCAGUUU..UAGGGGGUUCGAUUCCUUCCUUUUUUG
NC_002763_S2_6874_6942_m GAAAAAGUCAUAG..GGUCUAUGGGAUUGGCUUGAAACCAAUUU..UUGGGGGUUCAAAUCCUUCCUUUUUCG
NC_012775_S2_6857_6925_m GAAAAAGUCAUAG..GGUCUAUGGGAUUGGCUUGAAACCAAUUU..UUGGGGGUUCAAAUCCUUCCUUUUUCG
NC_002811_S2_6897_6965_m AAGAAAGACAUAG..UGGUUAUGAGGUUGGCUUGAAACCAAUCU..UAGGGGGUUCAAUUCCUUCCUUUCUUG
NC_012774_S2_6916_6985_m AAGAAAGACAUaa..UGGUUAUGAAGUUGGCUUGAAACCAAUUU.uUAGAGGGUUCAAUUCCUUCCUUUCUUG
NC_010299_S2_6899_6967_m AAGAGAGUCAUAA..UGGUUAUGGAAUUGGCUUGAAACCAGUUU..UAGGGGGUUCAAAUCCUUCCUUUCUUG
NC_012763_S2_6916_6984_m AAGAAAGUCAUAU..AGGUUAUGGAGUUGGCUUGAAACUAAUUU..UAGGGGGUUCGAUUCCUCCCUUUCUUG
NC_002765_S2_6922_6989_m AAGAAAGUCAUgG...GGUUAUGGGGUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUCCCUUUCUUG
NC_012764_S2_6902_6971_m GAGAAAGUCAUAA..UGGUUAUGGAGUUGGCUUGAAACUAAUUU.uUAGAAGGUUCGAUUCCUUCCUUUCUUG
NC_011053_S2_6892_6960_m GAGAAAGUCAUAG..UGGUUAUGGGGUUGGCUUGAAACCAGUUA..UAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_012766_S2_6892_6960_m AAGAAAGUUGUAA..UGGUUACACAGUUGGCUUGAAACCAAUUU..AAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_012769_S2_6892_6960_m AAGAAAGUUGUAA..UGGUUACACAGUUGGCUUGAAACCAAUUU..AAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_012771_S2_6890_6958_m AAGAAAGUUGUAA..UGGUUACAUAGUUGGCUUGAAACCAAUUU..AAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_010300_S2_6893_6961_m GAGAAAGUUGUAA..UGGUUACACAGUUGGCUUGAAACCAAUUU..GAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_004025_S2_6885_6953_m AAGAAAGUUGUAG..UGGUUACGCGGUUGGCUUGAAACCAAUUU..UAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_012773_S2_6902_6970_m AAGAAAGUCAUAG..UGGUUAUGUGGUUGGCUUGAAACCAGUUU..UAGGAGGUUCGAUUCCUUCCUUUCUUG
NC_012761_S2_6907_6975_m AAGAAAGUCAUag..UGGUUAUGAAGUUGGCUUGAAACUAAUUU..UUGGAGGUUCGAUUCCUUCCUUUCUUG
NC_012762_S2_6906_6974_m AGGAAAGUCAUag..UGGCUAUGAAGUUGGCUUGAAACUAACUA..UAGGAGGUUCGAUUCCUUCCUUUCUUG
NC_002521_S2_6861_6929_m AAGAAAGUCGUag..AGGUUACGAAGUUGGCUUGAAACCGAUUU..UUGGGGGUUCGAUUCCUUCCUUUCUUG
NC_011124_S2_6892_6960_m GAGAAAGGCAUag..UGGCUAUGGUAUUGGCUUGAAACCAGUCU..UGGAAGGUUCGAUUCCUUCCUUUCUUA
NC_009691_S2_6894_6962_m GAGAAAGGCAUag..UGGCUAUGGUAUUGGCUUGAAACCAGUCU..UGGAAGGUUCGAUUCCUUCCUUUCUUA
NC_008093_S2_6892_6960_m GAGAAAGACAUaa..UGGUUAUGGCAUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_008092_S2_6892_6960_m GAGAAAGACAUaa..UGGUUAUGACAUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_010340_S2_6891_6959_m GAGAAAGACAUaa..UGGUUAUGAUAUUGGCUUGAAACCAAUCU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_002008_S2_6891_6959_m GAGAAAGACAUaa..UGGUUAUGACAUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_011218_S2_6893_6961_m GAGAAAGACAUaa..UGGUUAUGAUAUUGGCUUGAAACCAAUCU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_009686_S2_6892_6960_m GAGAAAGACAUaa..UGGUUAUGACAUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_013445_S2_6890_6958_m GAGAAAGACAUaa..UGGUUAUGGCAUUGGCUUGAAACCAACUC..UAGGAGGUUCGAUUCCUUCCUUUCUUA
NC_013700_S2_6899_6967_m AAGAAAGACAUaa..UGGUUAUGGUGCUGGCUUGAAACCAGCUU..UAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_008434_S2_6892_6960_m GAGAAAGACAUAG..UGGUUAUGGCACUGGCUUGAAACCAGUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_010497_S2_6889_6957_m GAGAAAGUCAUGG..UGGUUAUGGCAUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCCUCCUUUCUUA
NC_009692_S2_6886_6954_m AAGAAAGACAUaa..UGGUUAUGACAUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_011358_S2_6886_6954_m GAGAAAGACAUAG..UGGUUAUGGCAUUGGCUUGAAACCGAUUU..UAGGAGGUUCGAUUCCUUCCUUUCUUA
NC_012141_S2_6886_6954_m GAGAAAGACAUaa..UGGUUAUGAUAUUGGCUUGAAACCAAUUC..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_009678_S2_6883_6951_m GAGAAAGACAUAG..UGGCUAUGAUAUUGGCUUGAAACCAAUCC..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_011579_S2_6882_6950_m GAGAAAGACAUaa..UGGUUAUGAUAUUGGCUUGAAACCAAUCC..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_009677_S2_6881_6949_m GAGAAAGACAUaa..UGGUUAUGAUAUUGGCUUGAAACCAGUCU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_011125_S2_6884_6952_m GAGAAAGACAUAG..UGGUUAUGACAUUGGCUUGAAACCAGUUU..UGGGGGGUUCGAUUCCUUCCUUUCUUA
NC_004029_S2_6892_6960_m AAGAAAGACAUAG..UGGUUAUGAUAUUGGCUUGAAACCAGUUU..UAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_008417_S2_6897_6965_m GAGAAAGACAUaa..UGGUUAUGACAUUGGCUUGAAACCAGUUU..UAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008420_S2_6902_6970_m GAGAAAGACAUaa..UGGUUAUGACAUUGGCUUGAAACCAGUUU..UAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008415_S2_6894_6962_m GAGAAAGACAUaa..UGGUUAUGACGUUGGCUUGAAACCAGUUU..UAGAGGGUUCGACUCCUUCCUUUCUUA
NC_004030_S2_6897_6965_m GAGAAAGACAUaa..UGGUUAUGACAUUGGCUUGAAACCAGUUU..UAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008419_S2_6902_6970_m GAGAAAGACAUaa..UGGUUAUGACAUUGGCUUGAAACCAGUUU..UAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008418_S2_6897_6965_m GAGAAAGACAUaa..UGGUUAUGACGUUGGCUUGAAACCAGUUU..UAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008416_S2_6900_6968_m GAGAAAGACAUaa..UGGUUAUGACAUUGGCUUGAAACCAGUUU..UAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008427_S2_6885_6953_m GAGAAAGACAUaa..GGGUUAUGGUAUUGGCUUGAAACCAGUCU..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008426_S2_6889_6957_m GAGAAAGACAUaa..AGGUUAUGGUAUUGGCUUGAAACCAGUUU..CAGGGGGUUCGACUCCUUCCUUUCUUA
NC_001602_S2_7791_7859_m GAGAAAGACAUaa..GGGUUAUGGUAUUGGCUUGAAACCAGUUU..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008425_S2_6893_6961_m GAGAAAGACAUaa..GGGUUAUGGUGUUGGCUUGAAACCAGUUU..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008424_S2_6893_6961_m GAGAAAGACAUaa..GGGUUAUGGUGUUGGCUUGAAACCAGUUU..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008423_S2_6894_6962_m GAGAAAGACAUaa..AGGUUAUGGUGUUGGCUUGAAACCAGUUU..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008422_S2_6895_6963_m GAGAAAGACAUaa..AGGUUAUGGUGUUGGCUUGAAACCAGUUU..CAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_008421_S2_6899_6967_m GAGAAAGACAUaa..AGGUUAUGGUGUUGGCUUGAAACCAGUUU..CAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_008428_S2_6885_6953_m GAGAAAGACAUaa..GGGUUAUGGUGUUGGCUUGAAACCAGUUU..CAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_008429_S2_6883_6951_m GAGAAAGACAUaa..GGGUUAUGGUAUUGGCUUGAAACCAGUUU..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008430_S2_6884_6952_m GAGAAAGACAUaa..GGGUUAUGGUGUUGGCUUGAAACCAGUUU..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_001325_S2_7817_7885_m GAGAAAGACAUaa..GGGUUAUGGUGUUGGCUUGAAACCAGUUU..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008431_S2_6886_6954_m GAGAAAGACAUaa..GGGUUAUGGUGUUGGCUUGAAACCAGUUU..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008433_S2_6883_6951_m GAGAAAGACAUaa..GGGUUAUGGUGUUGGCUUGAAACCAGUUU..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_008432_S2_6886_6954_m GAGAAAGACAUaa..GGGUUAUGGUGUUGGCUUGAAACCAGUUU..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_009126_S2_9340_9408_m GAGAAAGACAUAG..UGGAUAUGGCAUUGGCUUGAAACCAGUUU..CAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_009492_S2_8250_8318_m GAGAGAGACAUAG..UGGUUAUGAUGCUGGCUUGAAACCAAUUC..UAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_011116_S2_7746_7814_m GAGAGAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUUU..UAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_009968_S2_7775_7843_m GAGAAAGGCAUag..UGGUUAUGAUAUUGGCUUGAAACCAAUUC..CAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_009970_S2_7806_7874_m GAGAGAGGCAUag..UGGUUAUGAUAUUGGCUUGAAACCAAUUC..CAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_009969_S2_7752_7820_m GAGAGAGACAUAG..UGGUUAUGYUAUUGGCUUGAAACCAAUUU..CAGGGGGUUCGACUCCUUCCUUUCCUU
NC_003426_S2_7833_7901_m GAGAGAGGCAUag..UGGUUAUGAUAUUGGCUUGAAACCAACUC..CAGAGGGUUCGACUCCCUCCUUUCUUA
NC_003427_S2_8026_8094_m GAGAGAGACAUAG..UGGUUAUGAUAUUGGCUUGAAACCAAUUC..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_003428_S2_8021_8089_m GAGAGAGACAUAG..UGGUUAUGAUAUUGGCUUGAAACCAAUUC..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_011112_S2_7769_7837_m GAGAGAGACAUAG..UGGUUAUGAUAUUGGCUUGAAACCAAUUC..CAGAGGGUUCGACUCCUUCCUUUCUUA
NC_009971_S2_7785_7853_m GAGAGAGGCAUag..UGGUUAUGAUAUUGGCUUGAAACCAAUCC..CAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_009331_S2_8490_8558_m GAGAGAGGCAUag..UGGUUAUGAUAUUGGCUUGAAACCAGUUC..CAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_008753_S2_7859_7927_m GAGAGAGGCAUag..UGGUUAUGAUAUUGGCUUGAAACCAAUUC..CAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_011118_S2_8480_8548_m GAGAGAGGCAUag..UGGUUAUGAUAUUGGCUUGAAACCAAUUC..CAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_011117_S2_1543_1611_m GAGAGAGGCAUag..UGGUUAUGAUAUUGGCUUGAAACCAAUUC..CAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_005212_S2_7782_7850_m GAGAAAGACAUaa..UGGUUAUGGCAUUGGCUUGAAACCAGUUA..AAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_001700_S2_7758_7826_m GAGAAAGACAUaa..UGGUUAUGGCAUUGGCUUGAAACCAGUUA..AAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_008450_S2_7786_7854_m GAGAGAGACAUAG..UGGUUAUGACAUUGGCUUGAAACCAGUCC..AAGAAGGUUCGAUUCCUUCCUCUCUUA
NC_010641_S2_7847_7915_m GAGAAAGACAUAG..UGGUUAUGAUAUUGGCUUGAAACCAGUCU..GAGGAGGUUCGAUUCCUUCCUUUCUUA
NC_010642_S2_7822_7890_m GAGAAAGACAUAG..UGGUUAUGGUAUUGGCUUGAAACCAGUCU..AAGGAGGUUCGAUUCCUUCCUUUCUUA
NC_010638_S2_7641_7709_m GAGAAAGACAUAG..UGGUUAUGGCAUUGGCUUGAAAUCAAUCU..AAGGAGGUUCGAUUCCUUCCUUUCUUA
NC_006835_S2_6890_6958_m GAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_005268_S2_6913_6981_m AAGAAAGACAUaa..UGGUUAUGAUAUUGGCUUGAAACCAAUGG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_006930_S2_6905_6973_m AAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUGG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_006931_S2_6907_6975_m AAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUGG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_005271_S2_6918_6986_m AAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUGG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_006926_S2_6916_6984_m AAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUAG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_006929_S2_6914_6982_m AAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUGG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_006928_S2_6913_6981_m AAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUGG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_007938_S2_6912_6980_m AAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUGG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_001601_S2_7325_7393_m AAGAAAGACAUAG..UGGUUAUGAUAUUGGCUUGAAACCAAUGG..GAGAAGGUUCGAUUCCUUCCUUUCUUG
NC_007937_S2_6908_6976_m AAGAAAGACAUAG..UGGUUAUGGUGUUGGCUUGAAACCAAUAG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_001321_S2_7328_7396_m AAGAAAGACAUAG..UAAUUAUGAUGUUGGCUUGAAACCAAUGG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_006927_S2_6921_6989_m AAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUGG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_005270_S2_6917_6985_m AAGAAAGACAUaa..UGGUUAUGAUGUUGGCUUGAAACCAAUGG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_005269_S2_6906_6974_m AAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUGG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_012061_S2_6908_6976_m AAGAAAGACAUaa..UGGUUAUGAUGUUGGCUUGAAACCGAUUA..GAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_012062_S2_6910_6978_m AAGAAAGACAUaa..UGGUUAUGCUGUUGGCUUGAAACCGAUUA..GAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_005278_S2_6912_6980_m AAGAAAGACAUAG..UGGUUAUGAUAUUGGCUUGAAACCGAUUA..GAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_012057_S2_6911_6979_m AAGAAAGACAUaa..UGGUUAUGAUGUUGGCUUGAAACCGAUUA..GAGGAGGUUCGAUUCCUUCCUUUCUUG
NC_012051_S2_6909_6977_m AAGAAAGACAUaa..UGGUUAUGAUGUUGGCUUGAAACCGAUUA..GAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_012053_S2_6909_6977_m AAGAAAGACAUaa..UGGUUAUGAUGUUGGCUUGAAACCGAUUA..GAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_012058_S2_6909_6977_m AAGAAAGACAUaa..UGGUUAUGAUGUUGGCUUGAAACCGAUUA..GAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_012059_S2_6909_6977_m AAGAAAGACAUaa..UGGUUAUGAUGUUGGCUUGAAACCGAUUA..GAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_005276_S2_6914_6982_m AAGAAAGACAUAU..UGGUUAUGGUGUUGGCUUGAAACCAAUUG..AAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_007629_S2_6912_6980_m AAGAAAGACAUAG..UGGUUAUGGUGUUGGCUUGAAACCAAUUG..GAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_005279_S2_6910_6978_m AAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUUA..GAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_005280_S2_6912_6980_m AAGAAAGACAUaa..AGGUUAUGCUGUUGGCUUGAAACCGACUA..GAGAGGGUUCGACUCCUUCCUUUCUUG
NC_005272_S2_6908_6976_m AAGAAAGUCAUAG..UGGUUAUGGUGUUGGCUUGAAACCAACUA..AAGGAGGUUCGAUUCCUUCCUUUCUUG
NC_002503_S2_6915_6983_m AAGAGAGACAUaa..AGGUUAUGAUGUUGGCUUGAAACCAGCUA..GAGAGGGUUCGAGUCCUUCCUUUCUUG
NC_005275_S2_6907_6975_m AAGAAAGACAUAG..UGGUUAUGGUGUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAAUCCUUCCUUUCUUG
NC_005277_S2_6914_6982_m AAGAGAGACAUgu..UGGUUAUGGGGUUGGCUUGAAACCAAUUA..GAGAAGGUUCGAUUCCUUCCUUUCUUG
NC_005274_S2_6906_6974_m AAGAAAGACAUAG..UGGUUAUGGUAUUGGCUUGAAACCAGUUA..CAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_005273_S2_6911_6979_m AAGAAAGACAUaa..UGGUUAUGGUGUUGGCUUGAAACCAAUUA..UAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_000889_S2_6889_6957_m GAGAGAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAACAG..GAGGAGGUUCGAUUCCUUCCUCUCUUG
NC_012098_S2_6869_6937_m AAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUAA..CAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_007441_S2_6868_6936_m GAGAAAGACAUAG..UGGUUAUGGUGUUGGCUUGAAACCAAUAA..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_012346_S2_7228_7298_m GAGAGAGAGACAUagAGGUUAUGAUGUUGGCUUGAAACCAAUAG..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_006380_S2_7762_7830_m GAGAGAGACAUAG..AGGUUAUGGUGUUGGCUUGAAACCAAUAG..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_005971_S2_7232_7300_m GAGAGAGACAUAG..AGGUUAUGAUGUUGGCUUGAAACCAAUAG..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_012706_S2_7230_7298_m GAGAGAGACAUAG..AGGUUAUGAUGUUGGCUUGAAACCAAUAG..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_006853_S2_7229_7297_m GAGAGAGACAUAG..AGGUUAUGAUGUUGGCUUGAAACCAAUAG..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_006295_S2_7243_7311_m GAGAGAGACAUAG..UGGCUAUGAUGUUGGCUUGAAACCAAUAA..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_013069_S2_6871_6939_m GAGAGAGACAUAG..UGGUUAUGGUGUUGGCUUGAAACCGAUAA..UAGGGGGUUCAAUUCCUUCCUCUCUUA
NC_005044_S2_6870_6938_m GAGAGAGACAUAG..UGGUUAUGGUGUUGGCUUGAAACCAAUAA..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_012096_S2_6870_6938_m GAGAGAGACAUaa..UGGCUAUGGUGUUGGCUUGAAACCAAUUU..CAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_013751_S2_6856_6924_m GAGAGAGACAUaa..UGGUUAUGGUGUUGGCUUGAAACCAAUUA..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_010640_S2_6868_6936_m GAGAGAGACAUaa..UGGCUAUGGUGUUGGCUUGAAACCAAUUU..CAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_001941_S2_6874_6942_m GAGAGAGUCAUAG..UGGCUAUGGUGUUGGCUUGAAACCAAUAA..UAGGAGGUUCGAUUCCUUCCUUUCUUA
NC_007704_S2_6892_6960_m GAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAGCUA..UGGGGGGUUCGAUUCCUUCCUUUCUUA
NC_006993_S2_6871_6939_m GAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAGCUA..UGGGGGGUUCGAUUCCUUCCUUUCUUA
NC_008462_S2_6879_6947_m GAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAGCUA..UGGGGGGUUCGAUUCCUUCCUUUCUUA
NC_007179_S2_6880_6948_m GAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAGCUA..UGGGGGGUUCGAUUCCUUCCUUUCUUA
NC_006973_S2_6873_6941_m GAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAGCUA..UGGGGGGUUCGAUUCCUUCCUUUCUUA
NC_008414_S2_6881_6949_m GAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAGCUA..UGGGGGGUUCGAUUCCUUCCUUUCUUA
NC_011821_S2_6867_6935_m GAGAAAGACAUAG..UGGCUAUGAUGUUGGCUUGAAACCAAUAA..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_008749_S2_6867_6935_m GAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAGUUA..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_004069_S2_6872_6940_m GAGAAAGACAUAG..UGGCUAUGAUGUUGGCUUGAAACCAGUUA..UGGAGGGUUCGAUUCCUUCCUUUCUUA
NC_008491_S2_6873_6941_m GAGAAAGACAUAG..UGGCUAUGAUGUUGGCUUGAAACCAGUUA..UGGAGGGUUCGAUUCCUUCCUUUCUUA
NC_007703_S2_6871_6939_m GAGAAAGACAUaa..UGGUUAUGGCGUUGGCUUGAAACCAGCUA..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_012100_S2_6870_6938_m GAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUAG..UAGGGGGUUCAAUUCCUUCCUUUCUUA
NC_012694_S2_6868_6936_m GAGAAAGACAUaa..UGGUUAUGAUGUUGGCUUGAAACCAGUAA..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_013753_S2_6868_6936_m GAGAAAGACAUaa..UGGUUAUGAUGUUGGCUUGAAACCAGUAA..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_008830_S2_8166_8234_m GAGAAAGACAUAG..UGGCUAUGACGUUGGCUUGAAACCAGUGA..GAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_000845_S2_8059_8127_m GAGAAAGACAUAG..UGGUUAUGACGUUGGCUUGAAACCAGUGG..GAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_012095_S2_6883_6951_m GAGAAAGACAUAG..UGGUUAUGACGUUGGCUUGAAACCAGUGG..GAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_012103_S2_6883_6951_m GAGAAAGACAUag..AGGCUGUGGCGUUGGCUUGAAACCAGUGG..AAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_009628_S2_6881_6949_m GAGAAAGUUAUAG..UGGCUAUAGGGUUGGCUUGAAACCAAUUA..AAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_009849_S2_6879_6947_m GAGAAAGUUAUAG..UGGCUAUAGGGUUGGCUUGAAACCAAUUA..AAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_009629_S2_6880_6948_m GAGAAAGAUAUAG..UGGCUAUAGGGUUGGCUUGAAACCAAUUA..AAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_012102_S2_6882_6950_m GAGAAAGUCAUAG..UGGCUAUGGGGUUGGCUUGAAACCAAUUA..GAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_011822_S2_6882_6950_m GAGAAAGUCAUAG..UGGCUAUGGGGUUGGCUUGAAACCAAUUA..GAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_002504_S2_6872_6940_m GAGAAAGUCAUAG..UGGCUAUGGGGUUGGCUUGAAACCAAUUA..GAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_013558_S2_6882_6950_m GAGAAAGUCAUAG..UGGCUAUGGGGUUGGCUUGAAACCAAUUA..GAGAGGGUUCGAUUCCUUCCUUUCUUA
NC_002612_S2_6889_6958_m GAGAAAGACAUAG..UGGUUAUGGGGUUGGCUUGAAACCAAUUU.uUAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_002619_S2_6891_6959_m GAGAAAGACAUAG..UGGUUAUGAUGUUGGCUUGAAACCAAUUC..UUGGGGGUUCGAAUCCUUCCUUUCUUA
NC_007393_S2_6889_6957_m GAGAAAGACAUAG..UGGUUAUGGUGUUGGCUUGAAACCAAUUG..CAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_006925_S2_6884_6952_m GAGAAAGACAUAG..UGGUUAUGGUGUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_002009_S2_6872_6940_m GAGAAAGACAUaa..UGGUUAUGAUGUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_011304_S2_6889_6957_m GAGAAAGACAUaa..UGGAUAUGGUGUUGGCUUGAAACCGAUAU..AAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_005433_S2_6889_6957_m GAGAAAGACAUaa..UGGAUAUGAUGUUGGCUUGAAACCAAUAU..GAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_005434_S2_6890_6958_m GAGAAAGACAUaa..UGGAUAUGAUGUUGGCUUGAAACCAAUAU..GAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_002626_S2_6872_6940_m GAGAGAGUCAUAG..UGGCUAUGGUAUUGGCUUGAAACCAAUUU..CUGGGGGUUCGAAACCUUCCUCUCUUA
NC_005436_S2_6880_6948_m GAGAGAGUCAUAG..UGGUUAUGGUAUUGGCUUGAAACCAAUUU..CUGGGGGUUCGAAACCUUCCUCUCUUG
NC_002080_S2_6888_6956_m GAGAAAGUUAUAG..UGGUUAUAAGAUUGGCUUGAAACCAGUUU..UUGGGGGUUCAAUUCCUUCCUUUCUUA
NC_005033_S2_6909_6977_m GAGAAAGUUAUAA..AGGUUAUAAGAUUGGCUUGAAACCAAUUU..UUGGGGGUUCAAUUCCUUCCUUUCUUA
NC_002808_S2_6893_6961_m GAGAAAGACAUaa..AGGUUAUGGAAUUGGCUUGAAACCAGUCU..UAGGGGGUUCGAAUCCUUCCUUUCUUA
NC_006893_S2_6891_6959_m GAGAAAGACAUaa..AGGUUAUGGGGCUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_003040_S2_6921_6987_m AGAAAGACAUagA...GGUUAUGGGGUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUC-CUUUCUU
NC_005435_S2_6893_6961_m GAGAAAGUCAUAA..UGGUUAUGGGGUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_008156_S2_6917_6985_m GAGAAAGACAUAG..UGGCUAUGAGGUUGGCUUGAAACCAAUUU..UUGGGGGUUCGAAUCCUUCCUUUCUUA
NC_005035_S2_6919_6987_m GAGAAAGACAUAG..UGGUUAUGGGGUUGGCUUGAAACCAGUCU..UUGGGGGUUCGAAUCCUUCCUUUCUUA
NC_002391_S2_6902_6970_m GAGAAAGACAUAG..UGGUUAUGAGGUUGGCUUGAAACCAAUUU..UAGGGGGUUCGAAUCCUUCCUUUCUUG
NC_005034_S2_6913_6981_m GAGAAAGACAUAG..UGGUUAUGGGGUUGGCUUGAAACCAGUCU..UUGGGGGUUCGAAUCCUUCCUUUCUUA
NC_001788_S2_6899_6967_m GAGAAAGACAUAG..UGGUUAUGAUAUUGGCUUGAAACCAGUUA..GAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_001640_S2_6904_6972_m GAGAAAGACAUAG..UGGUUAUGAUAUUGGCUUGAAACCAGUUA..GAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_001808_S2_6892_6960_m GAGAAAGACAUaa..AGGCUAUGAUAUUGGCUUGAAACCAGUUA..GAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_012681_S2_6896_6964_m GAGAGAGACAUAG..GGGCUAUGAUAUUGGCUUGAAACCAAUUA..AAGAAGGUUCGACUCCUUCCUCUCUUA
NC_012684_S2_6896_6964_m GAGAGAGACAUAG..AGGUUAUGAUAUUGGCUUGAAACCAAUUA..AAGGAGGUUCGAUUCCUUCCUCUCUUA
NC_012682_S2_6893_6961_m GAGAAAGACAUAG..AGGUUAUGAUAUUGGCUUGAAACCAGUUA..GAGGGGGUUCAAUUCCUUCCUUUCUUA
NC_012683_S2_6893_6961_m GAGAAAGACAUAG..AGGUUAUGAUAUUGGCUUGAAACCAGUCA..GAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_001779_S2_6893_6961_m GAGAAAGACAUAG..AGGUUAUGAUAUUGGCUUGAAACCAGUCA..GAGGGGGUUCGAUUCCUUCCUUUCUUA
NC_004027_S2_6853_6921_m GAGAGAGUCAUag..GGGUUAUGAUAUUGGCUUGAAACCAUUUU..CUGGGGGUUCAAUUCCUCCCUUUCUCG
NC_006923_S2_6905_6973_m AAGGAAGUCAUac..UGGGUAUGAGGUUGGCUUGAAACCGACUU..UAGGAGGUUCAAUUCCUCCCUUUCUUG
NC_001821_S2_6892_6960_m GAGAAAGUCAUAG..AGGUUAUGGAGCUGGCUUGAAACUAGUUU..UUGGGGGUUCGAUUCCUUCCUUUCUUG
NC_006924_S2_6897_6965_m AAGAAAGACAUac..UGGGUAUGAGGUUGGCUUGAAACCGAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_004032_S2_6871_6939_m AAGAAAGCCACAU..UGGAUGUGAAGUUGGCUUGAAACUUACUU..UAGGAGGUUCGAUUCCUUCCUUUCUUG
NC_007630_S2_6928_6996_m GAGAAAGUCAUAA..UGGUUAUGGGGUUGACUUGAAAUCAACUU..UUGGGGGUUCGAUUCCUUCCUUUCUUG
NC_006523_S2_6914_6984_m GAGAAAGUCAUAA..UGGUUAUGGGGUUGACUUGAAAUCAACUUuuUUGGGGGUUCGAUUCCUUCCUUUCUUG
NC_007631_S2_6939_7007_m GAGAAAGUCAUAA..AGGUUAUGGGGUUGACUUGAAAUCAAUUU..UUGGGGGUUCGAUUCCUUCCUUUCUCG
NC_006517_S2_6927_6995_m GAGAAAGUCAUAA..AGGUUAUGGGGUUGACUUGAAAUCAAUUU..UUGGGGGUUCGAUUCCUUCCUUUCUCG
NC_011949_S2_7096_7165_m GAGAAAGUCAUAA..UGGCUAUGGGGUUGACUUGAAAUCAAUUU.uUUGGGGGUUCGAUUCCUUCCUUUCUCG
NC_011944_S2_7851_7919_m GAGAAAGUCAUAA..AGGUUAUGGGGUUGACUUGAAAUCAAUUU..UUGGGGGUUCGAUUCCUUCCUUUCUUG
NC_001610_S2_6940_7008_m GAGAAAGUCAUAA..GGGUUAUGGGAUUGACUUGAAAUUAAUCU..UAGGGGGUUCAAUUCCUCCCUUUCUUA
NC_006299_S2_6950_7018_m GAGAAAGUCAUAA..AGGUUAUGGGGUUGACUUGAAAUUAAUCU..GAGGGGGUUCAAUUCCUCCCUUUCUUA
NC_008145_S2_6916_6984_m GAGAAAGUCAUAG..AGGUUAUGGGGUUGACUUGAAAUCAAUCU..UAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_008136_S2_6925_6993_m GAGAAAGUCAUAG..AGGUUAUGGGAUUGACUUGAAAUUAAUCU..UAGGAGGUUCGAUUCCUUCCUUUCUUG
NC_001794_S2_6938_7006_m GAGAAAGUCAUAG..AGGUUAUGGGAUUGACUUGAAAUUAAUCU..UAGGAGGUUCGAUUCCUUCCUUUCUUG
NC_008134_S2_6927_6995_m GAGAAAGUCAUag..GGGUUAUGAAAUUGACUUGAAAUCGAUUU..UAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_008135_S2_6932_7000_m GAGAAAGUCAUag..AGGCUAUGAGGUUGACUUGAAAUCAAUUU..UAGGAGGUUCGAUUCCUUCCUUUCUUG
NC_003039_S2_6911_6979_m GAGAAAGUCAUag..AGGUUAUGAGGUUGACUUGAAAUCAAUUU..UAGGGGGUUCGAUUCCUCCCUUUCUUA
NC_008133_S2_6924_6992_m GAGAAAGUUAUAG..AGGUUAUAGGGUUGACUUGAAAUCAACUU..UGGGAGGUUCAAUUCCUUCCUUUCUUG
NC_006524_S2_6923_6991_m GAGAAAGUCAUAG..AGGCUAUGUGGUUGACUUGAAAUCAAUUU..UUGGAGGUUCGAUUCCUUCCUUUCUUG
NC_006518_S2_6911_6979_m GAGAAAGUCAUag..AGGUUAUGAGGUUGACUUGAAAUCAAUUU..UAGAGGGUUCGAUUCCUUCCUUUCUUG
NC_003322_S2_6933_7001_m GAGAAAGUCAUAG..AGGUUAUGGAGUUGACUUGAAAUCAAUUU..UAGGGGGUUCAAUUCCUCCCUUUCUUG
NC_005828_S2_6912_6980_m GAGAAAGUCAUAG..AGGUUAUGGGAUUGACUUGAAAUCAAUUU..UUGGGGGUUCGAUUCCUUCCUUUCUUG
NC_005829_S2_6917_6985_m GAGAAAGUCAUAA..AGGUUAUGGGGUUGACUUGAAAUCAAUUU..UUGGGGGUUCGAUUCCUUCCUUUCUUG
NC_002746_S2_6919_6987_m GAGAAAGUCAUAG..AGGUUAUGGGGUUGACUUGAAAUCAAUCU..UAGGGGGUUCAAUUCCUUCCUUUCUUG
NC_007632_S2_6945_7013_m GAGAAAGUCAUAA..AGGUUAUGGAGUUGACUUGAAAUCAAUUU..UAGGGGGUUCGAUUCCUUCCUUUCUUG
NC_000891_S2_6932_7002_m AAGAAAGAAUCAUaaUGGUAGUGAGAUUGGCUUGAAACCAAUAU..UAGGGGGUUCAAUUCCUUCCUUUCUUG
NC_003321_S2_6927_6997_m AAGAAAGAAUCAUaaUGGUAGUGAGAUUGGCUUGAAACCAAUAU..UAGGAGGUUCAAUUCCUUCCUUUCUUG
NC_006364_S2_6931_7001_m AAGAAAGAAUCAUaaUGGUAGUGAGAUUGGCUUGAAACCAGUAU..UAGGAGGUUCAAUUCCUUCCUUUCUUG
#=GC SS_cons             (((((((,,<<<<.._____>>>>,<<<<<_______>>>>>,,..,,<<<<<_______>>>>>))))))):
#=GC RF                  aauuAauUAgCuu..AAguaaaGcauuUGuUUUGAAAaCAaaag..AuagggGUUcaAuUCcccuauUaauuU
#=GC SN                  0000000..1111.......1111.22222.......22222......33333.......333330000000.

#=GF CS                  73 columns, 21 paired, 18 covariant; 4 stems
//