# STOCKHOLM 1.0 ACTINOPTERYGII Q #=GF AU Infernal 1.0.1 #=GC CS 2.33343..3222.........2223.63236.......63236.....453.2........2.35434333.2. #=GC BP +++++++..++++.........++++.+++++.......+++++.....+++++........++++++++++++. NC_005451_Q_3930_4000_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAAC.CCCUUCUUUCUAA NC_012576_Q_3932_4002_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGC.CCCUUCUUUCUAA NC_005795_Q_3931_4001_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGC.CCCUUCUUUCUAA NC_004743_Q_3931_4001_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAAC.CCCUUCUUUCUAA NC_005252_Q_3982_4052_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAAC.CCCUUCUUUCUAA NC_004420_Q_3932_4002_m UAGGAGGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUUCUAA NC_004419_Q_3925_3995_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAAU.CCCUUUUUUCUAA NC_005834_Q_3930_4000_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGC.CCCUUCUUUCUAA NC_004742_Q_3943_4013_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGGGGGGUUCGAGU.CCCCUUUUUCUAA NC_008131_Q_3922_3992_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUGG.GGAUGGGUUCGAGU.CCCUUUUUCCUAG NC_004744_Q_3913_3983_m UAGGAGGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUGG.GGAUGGGUUCGAGU.CCCUUUUUCCUAG NC_008104_Q_3914_3984_m UAGGAGGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUGG.GGAUGGGUUCGAGU.CCCUUUUUCCUAG NC_005800_Q_3925_3995_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGUUGGGUUCGAGC.CCCUUCUUCCUAA NC_005796_Q_3927_3997_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAAU.CCCUUCUUUCUAA NC_006531_Q_3920_3990_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCAAGC.CCCUUCUUCCUAA NC_006532_Q_3919_3989_m UAGGAGGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_006533_Q_3921_3991_m UAGGAGGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_006543_Q_3920_3990_m UAGGAAGUGGUGUa..gCGGGAGCACCGAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_006534_Q_3914_3984_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_006535_Q_3914_3984_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_006537_Q_3921_3991_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_006538_Q_3921_3991_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCAAGU.CCCUUCUUCCUAA NC_006539_Q_3923_3993_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_002707_Q_3913_3983_m UAGGAAGUGGUGUa..gCGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCAAGU.CCCUUCUUCCUAA NC_011575_Q_3923_3993_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGC.CCCUUCUUCCUAA NC_006536_Q_3918_3988_m UAGGAGGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCAAGU.CCCUUCUUCCUAA NC_006540_Q_3919_3989_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_006541_Q_3919_3989_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_006542_Q_3924_3994_m UAGAAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCAAGU.CCCUUCUUUCUAA NC_006544_Q_3920_3990_m UAGGAAGUGGUGUa..gCGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_006545_Q_3919_3989_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_006546_Q_3923_3993_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_006547_Q_3918_3988_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCAAGU.CCCUUCUUCCUAA NC_013435_Q_3923_3993_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGC.CCCUUCUUCCUAA NC_013607_Q_3914_3984_m UAGAAAGUAGUGUa..gUGGGAGCACUAGGAGUUUUGAUCUCCUAC.GGAUAGGUUCGAGU.CCUAUCUUUCUAA NC_013633_Q_3901_3971_m UAGAAAGUAGUGUa..gUGGGAGCACCAGGGGUUUUGAUCUCCUGU.GGAUAGGUUCGAGU.CCUUUCUUUCUAA NC_013618_Q_3906_3976_m UAGGAAGUGGUGUa..gUGGAAGCGCUAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_013606_Q_3898_3968_m UAGGAAGUGGUGUa..gUGGAAGCGCUAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAAU.CCCUUCUUCCUAA NC_013632_Q_3931_4001_m UAGGAAGUAAUGUa..aUGGAAGCGUCAAGAGUUUUGAUCUCUUAG.GUAUGGGUUCGAAU.CCCUUCUUUCUAA NC_002761_Q_3907_3977_m UAGGAAGUAGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUAA.GGAUGGGUUCGAGU.CCCUUCUUUCUAA NC_013629_Q_3923_3993_m UAGGAAGUGGUGUa..aUGGAAGCGCUAAGAGUUUUGAUCUCUUGA.GUAUGGGUUCGAGU.CCCUUCUUUCUAA NC_013630_Q_3942_4012_m UAGGAAGUGGUGUa..aUGGAAGCGCUAAGAGUUUUGAUCUCUUGA.GUAUGGGUUCGAAU.CCCUUCUUUCUAA NC_013611_Q_3895_3965_m UAGGAAGUGGUGUa..gUGGAAGCGCUAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUUCUAA NC_013608_Q_3899_3969_m UAGGAAGUAGUGUa..gUGGAAGCGCUAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCCUCUUCCUAA NC_005299_Q_3806_3876_m UAGGAAGUGGUGUa..gUGGAAGCACUGAGGGUCUUGGUCUCUCUG.GGGUGGGUUCAAGU.CCCUCCUUCCUAA NC_013601_Q_3888_3958_m UAGGAAGUGGUGUa..gUGGAAGCACUGAGAGUUUUGAGCUCUUGA.GGAGGGGUUCGAUU.CCCUUGUUCCUAA NC_013612_Q_9076_9146_m UAGAAUUUAGUGUg..gUGGAAGCACUGGGAGUUUUGAGUUCCCUA.GGGUGGGUUCAAAU.UCCAUUAUUUUAA NC_013622_Q_3899_3969_m UAGGAAAUGGUGUa..gAGGGAGCACCGGAGUUUUUGAUGCUCUGG.GGAUGGGUUCAAUU.CCCAUUUUCCUAA NC_013602_Q_3911_3981_m UAGGAAAUGGUGUa..gAGGAAGCACCGGAGCUUUUGAUGUUCUGA.GGAUGGGUUCAAUU.CCCAUUUUCCUAA NC_013617_Q_3938_4008_m UAGGAAGUGGUGUa..aUGGGAGCGCUAAGAGUUUUGAUCUCUUGA.GAAUGGGUUCGAGU.CCCUUCUUCCUAA NC_013614_Q_3928_3998_m UAGGAAGUAGUGUa..aUGGGAGCACUAAGAGUUUUGAUCUCUUAA.GAAUAGGUUCGAAU.CCUUUUUUUCUAG NC_013613_Q_3863_3933_m UAGGAAGUGGUGUa..gUGGAAGCACUGAGAGUUUUGAUCUCUCUA.GCAUGGGUUCGAGU.CCCUUUUUCCUAA NC_004417_Q_3872_3942_m UAGGAGGUAGUGUa..aUGGGAGCACGAAGAGUUUUGAUCUCUUAA.GUAUGGGUUCGAUC.CCCCUUCUCCUAA NC_013610_Q_3869_3939_m UAGGAGGUGGUGUa..aUGGGAGCACUAGGAGUUUUGAUCUCCUAA.GCACGGGUUCGAAU.CCCUUCUUCCUAA NC_013631_Q_3901_3971_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUGA.GGACGGGUUCAAAU.CCCUUCUUCCUAA NC_013624_Q_3919_3989_m UAGGAGGUAGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGG.CCCUUCCUCCUAA NC_013626_Q_3922_3992_m UAGGAGGUAGUGUa..gUGGGAGCACCAAGAGCUUUGAUCUCUUGA.GGAUGGGUUCGAGG.CCCUUCCUCCUAA NC_013620_Q_3887_3957_m UAGAAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUUUUUCUAA NC_013621_Q_3910_3980_m UAGGAAGUAGUGUa..gUGGAAGCGCUAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUCCUAA NC_013623_Q_3915_3985_m UAGGAAGUAGUGUa..gUGGAAGCGCUAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAAU.CCCUUCUUCCUAA NC_013615_Q_4052_4122_m UAGGAAGUAGUGUa..gUGGAAGCGCUAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCAAGU.CCCUUCUUCCUAA NC_013625_Q_3909_3979_m UAGGAAGUAGUGUa..gUGGAAGCGCUAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAAU.CCCUUCUUCCUAA NC_013635_Q_3920_3990_m UAGGAAGUAGUGUa..aUGGAAGCGCUAGGAGUUUUGAUCUCCUGA.GUAUGGGUUCGAGU.CCCUUCUUUCUAA NC_005802_Q_3918_3988_m UAGGAAGUAGUGUa..aCGGAAGCGCUAAGAGUUUUGAUCUCUUGG.GUAAGGGUUCAAUU.CCCUUCUUUCUAA NC_005298_Q_3821_3891_m UAGAAGGUGGUGUa..aUGGAAGCACUGAGAGUUUUGAGUUCUUCG.GAAAGGGUUCAACC.CCCUUCUUUCUAU NC_013627_Q_3923_3993_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUUUUCCUAA NC_013436_Q_3905_3975_m UAGGAAGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUUUUCCUAA NC_013628_Q_3904_3974_m UAGGAAGUAGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCAAGU.CCCCUUUUUCUAA NC_013634_Q_3935_4005_m UAGGAAGUGGUGUa..gUGGAAGCGCUAGGAGUUUUGAGCUCCUGA.GGAUGGGUUCGAGU.CCCUUUUUCCUAA NC_013605_Q_3926_3996_m UAGGAAGUGGUGUa..gUGGAAGCGCUAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAAU.CCCUUCUUCCUAA NC_005805_Q_3937_4007_m UAGGAAAUGGUGUa..gUGGAAGCGCUAGGAGUUUUGAGCUCCUGA.GGAUGGGUUCGAGU.CCCUUUUUCCUAA NC_006913_Q_3886_3956_m UAGGGGGUAGUGUa..gUGGAAGCACUCAGAGUUUUGAUCUCUGCG.GGAUGGGUUCGAGU.CCCUUUCCCCUAG NC_009575_Q_3908_3978_m UAGAAAGUGGUGUa..gUGGAAGCACCCAGAGUUUUGAUCUCUGGA.GGACGGGUUCGAAU.CCCUUUUUUCUAA NC_009576_Q_3907_3977_m UAGAAAGUGGUGUa..gUGGAAGCACCCAGAGUUUUGAUCUCUGGA.GGAUGGGUUCGAAU.CCCUUUUUUCUAA NC_009577_Q_3905_3975_m UAGAAAGUGGUGUa..gUGGAAGCACCCAGAGUUUUGAUCUCUGGA.GGAUGGGUUCGAGC.CCCUUCUUUCUAA NC_009578_Q_3906_3976_m UAGAAAGUGGUGUa..gUGGAAGCACCCAGAGUUUUGAUCUCUGGA.GGAUGGGUUCGAGC.CCCUUCUUUCUAA NC_008107_Q_3908_3978_m UAGAAAGUGGUGUa..gUGGAAGCACCCAGAGUUUUGAUCUCUGGA.GGAUGGGUUCGAAU.CCCUUUUUUCUAA NC_009580_Q_3905_3975_m UAGAAAGUGGUGUa..gCGGAAGCACCCAGAGUUUUGAUCUCUGGA.GGAUGGGUUCGAAU.CCCUUUUUUCUAA NC_009583_Q_3911_3981_m UAGAAAGUGGUGUa..gAGGAAGCACCUAGAGUUUUGAUCUCUAGA.GGAAGGGUUCAAGU.CCCUUUUUUCUAA NC_009582_Q_3910_3980_m UAGAAAGUGGUGUa..gUGGAAGCACCCAGAGUUUUGAUCUCUGGA.GGAUGGGUUCGAAU.CCCUUUUUUCUAA NC_009586_Q_3906_3976_m UAGCAAGUGGUGUa..gUGGAAGCACACAGAGUUUUGAUCUCUGGA.GGAUGGGUUCGAAU.CCCUUCUUUCUAA NC_009590_Q_3911_3981_m UAGAAAGUGGUGUa..gUGGAAGCACCCAGAGUUUUGAUCUCUGGA.GGAUGGGUUCGAGU.CCCUUUUUUCUAA NC_009591_Q_3913_3983_m UAGAAAGUGGUGUa..gUGGAAGCACCCAGAGUUUUGAUCUCUGGA.GGAUGGGUUCGAGU.CCCUUUUUUCUAA NC_009592_Q_3912_3982_m UAGAAAGUGGUGUa..gUGGAAGCACCCAGAGUUUUGAUCUCUGGA.GGGAGGGUUCGAGC.CCCUUCUUUCUAA NC_009587_Q_3910_3980_m UAGAAAGUGGUGUa..gUGGAAGCACCCAGAGUUUUGAUCUCUGGA.GGAUGGGUUCGAAU.CCCUUUUUUCUAA NC_002616_Q_3914_3984_m UAGAAAGUGGUGUa..gUGGAAGCACCCAGAGUUUUGAUCUCUGGA.GGACGGGUUCGAGU.CCCUUCUUUCUAA NC_006917_Q_3880_3950_m UAGAAAGUGGUGUa..gUGGAAGCACCUAGAGUUUUGAUCUCUAGA.GGAUGGGUUCGAGU.CCCUUCUUUCUAA NC_009588_Q_3889_3959_m UAGAAAGUGGUGUa..aUGGAAUCACCCGGAGUUUUGAUCUCUAAG.AUGUGGGUUCGAGU.CCCUCCUUUCUAA NC_009589_Q_3898_3968_m UAGAAAGUGGUGUa..gUGGAAGCACCUGGAGUUUUGAUCUCCAGC.GGGUGGGUUCGAGU.CCCUCCUUUCUAA NC_009593_Q_3907_3977_m UAGAAAGUGGUGUa..gUGGAAGCACCCAGAGUUUUGAUCUCUGGA.GGAUGGGUUCGAGC.CCCUUCUUUCUAA NC_007889_Q_3885_3955_m UAGAAAAUGGUGUa..gUGGAGGCACUUAGAGUUUUGAUCUCUACA.GUAAGGGUUCGAGC.CCCUUUUUUCUAA NC_009581_Q_3911_3981_m UAGAAAAUGGUGUa..gAGGAAGCACCCGAAGUUUUGAUUUUCGGA.GGAAGGGUUCAAUU.CCCUUAUUUCUAA NC_003097_Q_3912_3982_m UAGAAAAUGGUGUa..gAGGAAGCACCCGAAGUUUUGAUUUUCGGA.GGAAGGGUUCAAUU.CCCUUAUUUCUAA NC_009584_Q_3906_3976_m UAGAAAAUGGUGUa..gUGGAAGCACUUAGAGUUUUGAUCUCUAAU.GGAUGGGUUCAAGU.CCCUUUUUUCUAA NC_009585_Q_3924_3994_m UAGAAAAUGGUGUa..gUGGAAGCACUUAGAGUUUUGAUCUCUGUU.GGAUGGGUUCGAGU.CCCUUUUUUCUAA NC_006919_Q_3885_3955_m UAGAAAGUGGUGUa..gUGGAAGCACCUAGAGUUUUGAUCUCUAAA.GGAUGGGUUCAAGU.CCCCUUUUUCUAA NC_005798_Q_3932_4002_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAAU.CCCUUCUUUCUAA NC_005803_Q_3932_4003_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUUGaGGAUGGGUUCGAAU.CCCUUCUUUCUAA NC_005804_Q_3928_3998_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUAA.GGAUGGGUUCGAGU.CCCUUCUUUCUAA NC_005799_Q_3929_3999_m UAGGAAGUGGUGUa..gUGGGAGCACUAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAGU.CCCUUCUUUCUAA NC_004593_Q_3864_3934_m UAGGAGGUGGUGUa..gUGGGAGCACCAAGAGUUUUGAUCUCUUGA.GGAUAGGUUCGAGU.CCUUUCUUUCUAG NC_004592_Q_3861_3931_m UAGAAGGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUAGGUUCAAGC.CCUUUCCUUCUAG NC_008128_Q_3890_3960_m UAGAAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUAA.GGAUGGGUUCGAGU.CCCCUUUUUCUAA NC_004391_Q_3887_3957_m UAGAAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUAA.GGAUGGGUUCAAGU.CCCUUUUUUCUAA NC_004393_Q_3909_3979_m UAGAAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUAA.GGACGGGUUCGAGU.CCCUUUUUUCUAA NC_003188_Q_3910_3980_m UAGAAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUAA.GGACGGGUUCGAGU.CCCUUUUUUCUAA NC_008126_Q_3895_3965_m UAGAAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUAA.GGAUGGGUUCAAGU.CCCUUUUUUCUAA NC_008127_Q_3910_3980_m UAGAAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUAA.GGAUGGGUUCAAGU.CCCUUUUUUCUAA NC_003189_Q_3906_3976_m UAGAAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUAA.GGAUGGGUUCGAGU.CCCUUUUUUCUAA NC_004394_Q_3910_3980_m UAGAAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUAA.GGAUGGGUUCGAGU.CCCCUUUUUCUAA NC_004395_Q_3922_3992_m UAGAAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUAA.GGAUGGGUUCGAGU.CCCCUUUUUCUAA NC_004392_Q_3903_3973_m UAGAAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUAA.GGAUGGGUUCAAGU.CCCCUUUUUCUAA NC_003187_Q_3891_3961_m UAGAAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUAA.GGAUGGGUUCGAAU.CCCCUUUUUCUAA NC_004386_Q_3909_3979_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUUA.GGUUGGGUUCGAGU.CCCUUCUUUCUAA NC_011174_Q_3904_3974_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUCA.GGUAGGGUUCGAGU.CCCUUCUUUCUAA NC_004385_Q_3895_3967_m UAGAUAGUGGUGUagggCGGAAGCACGAAGAGUUUUGAUCUCUUAA.GGUAGGGUUCGAGU.CCCUUCUUUCUAA NC_011178_Q_3906_3976_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUCG.GGUGGGGUUCGAGC.CCCCUCUUUCUAA NC_011172_Q_3878_3948_m UAGGAAGUAGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUCA.GCUAGGGUUCGAAC.CCCUUCUUUCUAA NC_012976_Q_3872_3942_m UAGGAAGUGGUGUa..gCGGAAGCACUAAGAGUUUUGAUCUCUUCA.GGUAGGGUUCGAAC.CCCUUCUUUCUAA NC_012981_Q_3876_3946_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUCA.GGUAGGGUUCAAAU.CCCUUCUUUCUAA NC_004387_Q_3877_3947_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUCA.GGUAGGGUUCAAGU.CCCUUCUUUCUAA NC_012979_Q_3882_3952_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUCA.GGUAGGGUUCAAAC.CCCUUCUUUCUAA NC_012975_Q_3884_3954_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUUA.GGUAGGGUUCAAGU.CCCUUCUUUCUAA NC_013434_Q_3876_3946_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUCA.GGUAGGGUUCGAAC.CCCUUCUUUCUAA NC_011180_Q_3949_4019_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUAA.GGUGGGGUUCGAGU.CCCCUCUUUCUAA NC_007403_Q_3894_3964_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUCA.GGUAGGGUUCGAGC.CCCUUCUUUCUAA NC_003184_Q_3894_3964_m UAGGAAGUGGUGUa..gCGGAAGCACUAAGAGUUUUGAUCUCUUCA.GGUAGGGUUCGAAC.CCCUUCUUUCUAA NC_011173_Q_3895_3965_m UAGAAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUCA.GGUAGGGUUCAAAU.CCCUUCUUUCUAA NC_003183_Q_3883_3953_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUAA.GGUAGGGUUCGAGU.CCCUUCUUUCUAA NC_011176_Q_3896_3966_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUCA.GGUAGGGUUCGAGC.CCCUUCUUUCUAA NC_009125_Q_3894_3964_m UAGGAAGUAGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUCA.GGUAGGGUUCAAAC.CCCUUCUUUCUAA NC_011387_Q_3892_3962_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUCA.GGUAGGGUUCAAGU.CCCUUCUUUCUAA NC_012361_Q_3895_3965_m UAGAAAAUGGUGUa..gCGGAAGCACCAAGAGUUUUGAUCUCUUCA.GGAAGGGUUCAAAU.CCCUUUUUUCUAA NC_012377_Q_3892_3962_m UAGAAAAUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUCG.GGGAGGGUUCAAAU.CCCUUUUUUCUAA NC_012312_Q_3893_3963_m UAGAAAAUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUCG.GGGAGGGUUCAAAU.CCCUUUUUUCUAA NC_011380_Q_3894_3964_m UAGAAAAUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUCG.GGGAGGGUUCAAGU.CCCUUUUUUCUAA NC_011381_Q_4097_4167_m UAGGAAGUAGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUCA.GGUGGGGUUCAAAC.CCCUUCUUUCUAA NC_011814_Q_3954_4024_m UAGAGAGUGGUGUa..aUGGGAGCACGAAGGGUUUUGAUCUCUUAA.GUAGAGGUUCAAAU.CCUCUUUUUCUAA NC_004388_Q_3888_3958_m UAGGAAGUGGUGUa..gUGGAAGCACUAAGAGUUUUGAUCUCUUAG.GGUAGGGUUCGAGC.CCCUUCUUUCUAA NC_013089_Q_3884_3954_m UAGGAAGUGGUGUa..gUGGGAGCACUAAGAGUUUUGAUCUCUUUA.GGUUGGGUUCAAGU.CCCUUCUUUCUAA 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UAGAAAGUGGUGUa..gAGGAAGCACUAAGAGUUUUGAUCUCUUGG.GCAUGGGUUCGACC.CCCUUCUUUCUAA NC_010110_Q_3913_3983_m UAGGAAGUGGUGUa..gAGGAAGCACAUUGAAUUUUGAUUUCUAGU.GUAAGGGUUCAAUU.CCCUUCUUUCUAA NC_008658_Q_3916_3986_m UAGAAAGUGGUGUa..aAGGAAGCACCAGGAGUUUUGAUCUCCUGA.GUAUGGGUUCAAUU.CCCUUUUUUCUAA NC_011211_Q_3914_3984_m UAGAAAGUGGUGUa..gAGGAAGCACCAAGAGUUUUGAUCUCUUGA.GCAUGGGUUCAACC.CCCUUCUUUUUAA NC_008642_Q_3908_3978_m UAGAAAGUGGUGUa..gAGGAAGCACGAAGAGUUUUGAUCUCUUAA.GCAUGGGUUCAACC.CCCUUCUUUUUAA NC_013709_Q_3906_3976_m UAGGGGGUGGUGUa..aAGGAAGCACCAAGAGUUUUGAUCUCUUAA.GAGAGGGUUCAACC.CCCUUUCCUCUAA NC_007885_Q_3898_3968_m UAGAGGGUGGUGUa..aAGGAAGCACCAAGAGUUUUGAUCUCUUAA.GUAUGGGUUCAACC.CCCUUUCCUCUAA NC_004694_Q_3913_3983_m UAGAAAGUGGUGUa..gAGGAAGCACUAAGAGUUUUGAUCUCUUGG.GCAUGGGUUCGACC.CCCUUCUUUCUAA NC_013186_Q_4836_4906_m UAGAAAGUGGUGUa..aAGGAAGCACCUGGAGUUUUGAUCUCUUGA.GUAUGGGUUCAAUU.CCCUUCUUUCUAG NC_013189_Q_4834_4904_m UAGAAUGUGGUGUa..aAGGAAGCACCUAGAGUUUUGAUCUCUUGA.GUAUGGGUUCAAUU.CCCUUCUUUCUAG NC_008648_Q_3917_3987_m UAGAAAGUGGUGUa..gAGGAAGCACUAAGAGUUUUGAUCUCUUGG.GCAUGGGUUCGACC.CCCUUCUUUCUAA NC_008651_Q_3912_3982_m UAGAAAGUGGUGUa..gAGGAAGCACUAAGAGUUUUGAUCUCUUGG.GCAUGGGUUCGACC.CCCUUCUUUCUAA NC_008682_Q_3921_3991_m UAGAAAGUGGUGUa..gAGGAAGCACUAAGAGUUUUGAUCUCUUGG.GCAUGGGUUCGACC.CCCUUCUUUCUAA NC_013072_Q_3922_3992_m UAGAAAGUGGUGUa..gAGGAAGCACUAAGAGUUUUGAUCUCUUGG.GCAUGGGUUCGACC.CCCUUCUUUCUAA NC_008653_Q_3917_3987_m UAGAAAGUGGUGUa..gAGGAAGCACUAAGAGUUUUGAUCUCUUGG.GCAUGGGUUCGAUC.CCCUUCUUUCUAA NC_008672_Q_3906_3976_m UAGAAAGUGGUGUa..gAGGAAGCACCAGGAGUUUUGAUCUCCUGA.GCAUGGGUUCGAUU.CCCUUCUUUCUAG NC_004693_Q_3940_4010_m UAGAAAGUGGUGUa..gCGGAAGCACCUGGAGUUUUGAUCUCUUGA.GCAUGGGUUCGAUU.CCCUUCUUUCUAA NC_011018_Q_3929_3999_m UAGAAAGUGGUGUa..gUGGAAGCACCAGGGGUUUUGGUCUCCUGA.GCAUGCGUUCGAGU.CCCCUUUUUCUAA NC_004702_Q_3927_3997_m UAGAAAGUGGUGUa..aUGGAAGCACCGGGAGUUUUGGUCCCCCGA.GCAUGGGUUCGAGC.CCCUUCUUUCUAA NC_007881_Q_3903_3973_m UAGAAAGUGGUGUa..gAGGAAGCACCUUGAGUUUUGAUCUCUUGA.GUAUGGGUUCAAGU.CCCUUCUUUCUAG NC_007890_Q_3893_3963_m UAGAAAGUGGUGUa..gUGGAAGCACCUUGAGUUUUGAUCUCUUGA.GUAUGGGUUCAACU.CCCUUCUUUCUAG NC_007882_Q_3903_3973_m UAGGAAGUGGUGUa..gUGGAAGCACCUUGAGUUUUGAUCUCUUGA.GUAUGGGUUCAAUU.CCCUUCUUUCUAG NC_007891_Q_3897_3967_m UAGAAAGUGGUGUa..gUGGAAGCACCUUGAGUUUUGAUCUCUUGA.GUAUGGGUUCGAUU.CCCUUCUUUCUAG NC_007892_Q_3915_3985_m UAGAGAGUGGUGUa..gUGGAAGCACCUGGAGUUUUGAUCUCUUGA.GCAUGGGUUCGAGU.CCCUUCUUUCUAA NC_004692_Q_3882_3952_m UAGAAAGUGGUGUu..aGUGGAGCACUAAGAGUUUUGAUUUCUUGG.GUAUGGGUUCAAGU.CCCAUCUUUCUAG NC_004701_Q_3895_3965_m UAGAAGGUGGUGUa..gUGGAAGCACCUGGAGUUUUGAUCUCCUGG.GUAUGGGUUCGAGU.CCCAUCUUUCUAG NC_004697_Q_3901_3971_m UAGGAAGUGGUGUa..aUGGAAACACUUGGGGUUUUGAUCUCCACA.AUAUGGGUUCGAGU.CCCUUCUUUCUAA NC_004698_Q_3881_3951_m UAGAAAGUGGUGUa..gUGGAAACACUUAGAGUUUUGAUCUCUAAG.AUAUGGGUUCGAGU.CCCUUCUUUCUAG NC_008280_Q_3909_3979_m UAGAAAGUGGUGUa..gAGGAAGCACUAAGAGUUUUGAUCUCUUGG.GCAUGGGUUCGACC.CCCUUCUUUCUAA NC_003489_Q_4763_4833_m UAGGAAGUGGUGUa..aUGGAAACACUUGGAGUUUUGAUCUCCAUA.AUAUGGGUUCAAAU.CCCUUCUUUCUAA NC_006381_Q_3898_3968_m UAGGAAGUGGUGUa..aUGGAAACACUUGGGGUUUUGAUCUCCACA.AUAUGGGUUCGAGU.CCCUUCUUUCUAA NC_012707_Q_3940_4010_m UAGGAAUUGGUGUa..uUGGAAGCACGGAGAGUUUUGAUCUCUCAG.GGAGGGGUUCGAAU.CCCCUUUUUCUAA NC_005145_Q_3929_3999_m UAGGAAGUGGUGUa..gUGGAAGCACCAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCGAAU.CCCCUCUUUCUAA NC_012705_Q_3961_4031_m UAGGAAGUGGUGUa..uUGGAAGCACGAAGAGUUUUGAUCUCUUAG.GGAGGGGUUCGAAU.CCCCUUUUUCUAA NC_012717_Q_3960_4030_m UAGGAAGUGGUGUa..uUGGAAGCACGAAGAGUUUUGAUCUCUUAG.GGAGGGGUUCGAAC.CCCCUUUUUCUAA NC_012710_Q_3940_4010_m UAGGAAGUGGUGUa..uUGGAAGCACGAAGAGUUUUGAUCUCUUUG.GUAAGGGUUCGAGU.CCCUUCUUUCUAA NC_012711_Q_3940_4010_m UAGGAAGUAGUGUa..uUGGAAGCAUGAAGAGUUUUGAUCUCUUUG.GUAAGGGUUCGAGC.CCCUUCUUUCUAA NC_012712_Q_3940_4010_m UAGGAAGUGGUGUa..uUGGAAGCACGAAGAGUUUUGAUCUCUUUG.GUAAGGGUUCGAGC.CCCUUCUUUCUAA NC_012713_Q_3943_4013_m UAGGAAGUGGUGUa..uUGGAAGCACGAAGAGUUUUGAUCUCUUUG.GUAAGGGUUCGAGG.CCCUUCUUUCUAA NC_012714_Q_3957_4027_m UAGGAAGGAGUGUa..uUGGAAGCACAAAGAGUUUUGAUCUCUUUA.GUGAGGGUUCGAGC.CCCUCUUUUCUAA NC_012715_Q_3951_4021_m UAGGAAAAAGUGUg..gUGGAAGCACAAAGAGUUUUGAUCUCUUUA.GGGAGGGUUCGAAU.CCCUCUUUUCUAA NC_010570_Q_3902_3972_m UAGGAAGUGGUGUa..uUGGAAGCACGAAGAGUUUUGAUCUCUUAG.GGAUGGGUUCAAAU.CCCUUUUUUCUAA NC_003095_Q_3925_3995_m UAGGAAGUGGUGUa..uUGGAAGCACAAAGAGUUUUGAUCUCUUUA.GGAUGGGUUCAAGU.CCCAUUUUUCUAA NC_007012_Q_4904_4974_m UAGGAAGUGGUGUa..uUGGAAGCACGAAGAGUUUUGAUCUCUUAG.GGGUGGGCUCAAAU.CCCAUUUUUCUAA NC_003096_Q_3898_3967_m UAGAGAAUGGUGUa..uUGGAAGCACUAAGAGUUUUGAUCUCUUGA.GGAUGGGUUCAAA-.CCCCUUUUUCUAA NC_005251_Q_3897_3967_m UAGGAAGUAGUGUa..aUGGGAGCACUGAAAGUUUUGAUCUUUCUG.GUGAAGGUUCAAAU.CCUUCUUUUCUAG NC_001778_Q_3851_3921_m UAGGAGAUGGUGUa..aUGGAAGCACUGAAAGUUUUGAUCUUUUUA.GUGGAGGUUCAAGU.CCUUCUUUCCUAG NC_004418_Q_3848_3918_m UAGGAAGUGGUGUa..aUGGGAGCACUGAAAGUUUUGAUCUUUCUG.GUGGAGGUUCGAGU.CCUUCUUUUCUAG #=GC SS_cons (((((((,,<<<<...._____>>>>,<<<<<_______>>>>>,,.,,<<<<<_______.>>>>>))))))): #=GC RF UauaaguUAGUGU....aaaaAGCACAugaaaUUUUGAuuuucaAg.GagguagUUcAAuu.cuaccacuuauAa #=GC SN 0000000..1111.........1111.22222.......22222.....33333........333330000000. #=GF CS 75 columns, 21 paired, 19 covariant; 4 stems //