# STOCKHOLM 1.0          BACTERIAL Gln
#=GC CS                                                                             .2444453...443.........344..54325.......52345......5642.........24653544442....
#=GC BP                                                                             .+++++++..+++w.........w+++.+++++.......+++++......+++++.......++++++++++++....
tdbD2269|Acholeplasma_laidlawii|2148|Gln|TTG                                        -AGGCCCATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-CTCGTAGGTTCAAATCCTGCTGGGCCTGCCA
tdbD8766|Acinetobacter_sp._ADP1|62977|Gln|TTG                                       -AGGGGCGTCGCCAAGT-GGT-AAGGCACCGGGTTTTGATCTCGGCA-TCCGTTGGTTCGAATCCAGCCGCCCCTGCCA
tdbD8557|Agrobacterium_tumefaciens_str._C58|176299|Gln|CTG                          -TGGGGAATAGTTCAAT-GGT-AGAACGACGGACTCTGACTCCGTTA-A-TCTTGGTTCGAGTCCAGGTTCCCCAGCCA
tdbD8529|Aquifex_aeolicus_VF5|224324|Gln|TTG                                        -TGGGGCGTAGCTCAACTGGC-AGAGCACCGGACTTTGGATCCGGGG-GTTCCAGGTTCGAGTCCTGGCGCCCCAGCCA
tdbD8767|Bacillus_anthracis_str._A2012|191218|Gln|TTG                               -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-TGCGCTGGTTCGAATCCAGCTAGCCCAGCCA
tdbD8717|Bacillus_anthracis_str._Ames|198094|Gln|TTG                                -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-TGCGCTGGTTCGAATCCAGCTAGCCCAGCCA
tdbD8733|Bacillus_anthracis_str._Sterne|260799|Gln|TTG                              -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-TGCGCTGGTTCGAATCCAGCTAGCCCAGCCA
tdbD8752|Bacillus_cereus_ATCC_10987|222523|Gln|TTG                                  -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-TGCGCTGGTTCGAATCCAGCTAGCCCAGCCA
tdbD8702|Bacillus_cereus_ATCC_14579|226900|Gln|TTG                                  -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-TGCGCTGGTTCGAATCCAGCTAGCCCAGCCA
tdbD8677|Bacillus_halodurans_C-125|272558|Gln|TTG                                   -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTGA-TGCGCTGGTTCGAATCCAGCTAGCCCAG---
tdbD8486|Bacillus_subtilis_subsp._subtilis_str._168|224308|Gln|TTG                  -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-TGCGTTGGTTCGAATCCAGCTAGCCCAG---
tdbD8768|Bacillus_thuringiensis_serovar_konkukian_str._97-27|281309|Gln|TTG         -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-TGCGCTGGTTCGAATCCAGCTAGCCCAGCCA
tdbD8715|Bacteroides_thetaiotaomicron_VPI-5482|226186|Gln|CTG                       -TGGGCTATGGTGTAAT-GGT-AACACTACAGATTCTGGTCCTGTCA-T-TCCTGGTTCGAATCCAGGTAGCCCAA---
tdbD8719|Bartonella_henselae_str._Houston-1|283166|Gln|CTG                          -TGGGGAATAGTTTAAT-GGT-AGAACAGCGGACTCTGACTCCGTCA-A-TCTTGGTTCGAATCCAAGTTCCCCAGCCA
tdbD8772|Bartonella_quintana_str._Toulouse|283165|Gln|TTG                           -TGGGGTATAGCCAAGC-GGT-AAGGCACCGGTTTTTGGTACCGGCA-TTCCCTGGTTCGAATCCAGGTACCCCAGCCA
tdbD8720|Bdellovibrio_bacteriovorus_HD100|264462|Gln|TTG                            -TGGGGTATCGTCAAGTTGGT-AAGACAACAGATTTTGATTCTGTCA-TTCGCAGGTTCGAGTCCTGCTACCCCATCCA
tdbD8661|Bifidobacterium_longum_NCC2705|206672|Gln|TTG                              -TCCCCCATGGTGTAAT-GGC-AGCACACGGGTCTTTGGAACCCTTT-G-TCTTGGTTCGAGTCCAGGTGGGGGAA---
tdbD8513|Borrelia_burgdorferi_B31|224326|Gln|TTG                                    -TGGGACGTCGACAAGT-GGT-AAGTCAACTGGTTTTGGTCCAGTCA-TTCGAGGGTTCGAATCCTTCCGTCCCAG---
tdbD8734|Borrelia_garinii_PBi|290434|Gln|TTG                                        -TGGGACGTCGACAAGC-GGT-AAGTCAACTGGTTTTGGTCCAGTCA-TTCGAGGGTTCGAATCCTTCCGTCCCAG---
tdbD8679|Bradyrhizobium_japonicum_USDA_110|224911|Gln|TTG                           -TGGGGCGTAGCCAAGC-GGT-AAGGCAGCGGATTTTGATTCCGCCA-TTCGGAGGTTCGATCCCTCCCGCCCCAGCCA
tdbD8542|Brucella_melitensis_16M|224914|Gln|CTG                                     -TGGGGGATAGTTTAAG-GGT-AGAACAGCGGACTCTGACTCCGTTA-G-TCTTGGTTCGAATCCAGGTCCCCCAGCCA
tdbD8664|Brucella_suis_1330|204722|Gln|CTG                                          -TGGGGGATAGTTTAAG-GGT-AGAACAGCGGACTCTGACTCCGTTA-G-TCTTGGTTCGAATCCAGGTCCCCCAGCCA
tdbD8489|Buchnera_aphidicola_str._APS_(Acyrthosiphon_pisum)|107806|Gln|TTG          -TGGGGTATAGCCAAGT-GGTTAAGGCACCGGTTTTTGATACCGGCA-T-CCCTGGTTCGAATCCAGGTACCCCAGCCA
tdbD8703|Buchnera_aphidicola_str._Bp_(Baizongia_pistaciae)|224915|Gln|TTG           -TGGGATATAGCCAAGT-GGT-AAGGCACCGGTTTTTGATACCGGCA-T-CCCTGGTTCGAATCCAGGTATCCCAG---
tdbD8639|Buchnera_aphidicola_str._Sg_(Schizaphis_graminum)|198804|Gln|TTG           -TGGGGTATAGCCAAGT-GGTTAAGGCACCGGTTTTTGATACCGGCA-T-CCCTGGTTCGAATCCAGGTACCCCAGCCA
tdbD8514|Campylobacter_jejuni_subsp._jejuni_NCTC_11168|192222|Gln|TTG               -TGGGGTATCGCCAAGC-GGT-AAGGCAACAGGTTTTGGTCCTGTCA-TTCAGGGGTTCGAATCCCTTTACCCCATCCA
tdbD8773|Candidatus_Blochmannia_floridanus|203907|Gln|TTG                           -TGGGGTATAGCCAAGC-GGT-AAGGCAGCGGGTTTTGATCCCGCCA-CTCCCAGGTTCGAATCCTGGTACCCCAG---
tdbD8726|Candidatus_Protochlamydia_amoebophila_UWE25|264201|Gln|TTG                 -TGGGGTGTAGCCAAGC-GGT-AAGGCAGCGGTTTTTGGTACCGCCA-TGCGGAGGTTCGAATCCTTCCACCCCAA---
tdbD8515|Caulobacter_crescentus_CB15|190650|Gln|TTG                                 -TGGGGAATGGTGTAAT-GGT-AACACTGCGGTTTTTGGTACCGTCA-T-TCTAGGTTCGAGTCCTAGTTCCCCAGCCA
tdbD8535|Chlamydia_muridarum_Nigg|243161|Gln|TTG                                    -TGGGGTGTGGCCAAGC-GGT-AAGGCAGCGGTTTTTGGTACCGCGC-ATCGGAGGTTCGAATCCTTCCACCCCAG---
tdbD8483|Chlamydia_trachomatis_D/UW-3/CX|272561|Gln|TTG                             -TGGGGTGTGGCCAAGC-GGT-AAGGCAGCGGTTTTTGGTACCGCGC-ATCGGAGGTTCGAATCCTTCCACCCCAG---
tdbD8481|Chlamydophila_pneumoniae_AR39|115711|Gln|TTG                               -TGGGGTGTGGCCAAGC-GGT-AAGGCAGCGGTTTTTGGTACCGTGC-ATCGGAGGTTCGAATCCTTCCACCCCAG---
tdbD8482|Chlamydophila_pneumoniae_CWL029|115713|Gln|TTG                             -TGGGGTGTGGCCAAGC-GGT-AAGGCAGCGGTTTTTGGTACCGTGC-ATCGGAGGTTCGAATCCTTCCACCCCAG---
tdbD8502|Chlamydophila_pneumoniae_J138|138677|Gln|TTG                               -TGGGGTGTGGCCAAGC-GGT-AAGGCAGCGGTTTTTGGTACCGTGC-ATCGGAGGTTCGAATCCTTCCACCCCAG---
tdbD8635|Chlorobium_tepidum_TLS|194439|Gln|TTG                                      -TGGGGCGTCGCCAAGT-GGT-AAGGCATCGGCCTTTGGAGCCGACA-TCCGCAGGTTCGAATCCTGCCGCCCCAG---
tdbD8540|Clostridium_acetobutylicum_ATCC_824|272562|Gln|TTG                         -TGGGATGTAGCCAAGT-GGT-AAGGCACAGGACTTTGACTCCTGCATTCCGTAGGTTCGAATCCTGCCATCCCAGCCA
tdbD8534|Clostridium_perfringens_str._13|195102|Gln|TTG                             -TGGGATATCGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-TTCGCAGGTTCGAATCCTGCTATCCCAGCCA
tdbD8681|Clostridium_tetani_E88|212717|Gln|CTG                                      -TGCCCATTAGCCAAAT-GGT-AAGGCACCTGTCTCTGGAACAGGCACTGTGCTGGTTCGAATCCAGCATGGGCAGCCA
tdbD8721|Corynebacterium_diphtheriae_NCTC_13129|257309|Gln|TTG                      -TTCCCCATGGTGTAATCGGC-AACACTACGGTTTTTGGTACCGTCA-T-TCTAGGTTCGAGTCCTGGTGGGGAAG---
tdbD8665|Corynebacterium_efficiens_YS-314|196164|Gln|TTG                            -TTCCCCATGGTGTAATTGGC-AACACAGCGGTTTTTGGTACCGTCG-T-TCAAGGTTCGAGTCCTTGTGGGGAAG---
tdbD8642|Corynebacterium_glutamicum_ATCC_13032|196627|Gln|CTG                       -TGGCCTATGGTGTAATTGGC-AACACAACGGTTTCTGGTACCGTCA-T-TCTAGGTTCGAGTCCTGGTAGGCCAG---
tdbD8701|Coxiella_burnetii_RSA_493|227377|Gln|TTG                                   -TGGGGTGTCGCCAAGC-GGT-AAGGCACTGGGTTTTGATCCCAGCA-TTCCCAGGTTCGAATCCTGGCACCCCAGCCA
tdbD8517|Deinococcus_radiodurans_R1|243230|Gln|TTG                                  -AGGGATATGGTGTAAT-GGT-AGCACAACAGATTTTGGTTCTGTTT-G-TCTAGGTTCGAATCCTTGTATCCCTGCCA
tdbD8754|Desulfovibrio_vulgaris_subsp._vulgaris_str._Hildenborough|882|Gln|CTG      -TGGGCTGTCGTTCAATTGGC-AGGACGACGGATTCTGGCTCCGTTA-A-TCTAGGTTCGAGTCCTAGCAGCCCAGCCA
tdbD8683|Enterococcus_faecalis_V583|226185|Gln|TTG                                  -TGGGGTATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-TGCGTTGGTTCGAATCCAGCTACCCCAG---
tdbD8705|Escherichia_coli_CFT073|199310|Gln|TTG                                     -TGGGGTATCGCCAAGC-GGT-AAGGCACCGGTTTTTGATACCGGCA-TTCCCTGGTTCGAATCCAGGTACCCCAGCCA
tdbD8504|Escherichia_coli_K12|83333|Gln|TTG                                         -TGGGGTATCGCCAAGC-GGT-AAGGCACCGGTTTTTGATACCGGCA-TTCCCTGGTTCGAATCCAGGTACCCCAGCCA
tdbD8506|Escherichia_coli_O157:H7|83334|Gln|TTG                                     -TGGGGTATCGCCAAGC-GGT-AAGGCACCGGTTTTTGATACCGGCA-TTCCCTGGTTCGAATCCAGGTACCCCAGCCA
tdbD8508|Escherichia_coli_O157:H7_EDL933|155864|Gln|TTG                             -TGGGGTATCGCCAAGC-GGT-AAGGCACCGGTTTTTGATACCGGCA-TTCCCTGGTTCGAATCCAGGTACCCCAGCCA
tdbD8636|Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586|190304|Gln|TTG         -TGGGGTGTCGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTTA-TGCGTTGGTTCGAATCCAGCCACCCCAGCCA
tdbD8735|Geobacter_sulfurreducens_PCA|243231|Gln|TTG                                -TGGGGTGTCGCCAAGC-GGT-AAGGCACCGGATTTTGATTCCGGCA-TTCCAAGGTTCGAATCCTTGCACCCCAGCCA
tdbD8512|Haemophilus_influenzae_Rd_KW20|71421|Gln|TTG                               -TGGGGTATCGCCAAGC-GGT-AAGGCACTGGGTTTTGATCTCAGCA-TTCCTAGGTTCGAATCCTAGTACCCCAGCCA
tdbD8696|Helicobacter_hepaticus_ATCC_51449|235279|Gln|TTG                           -TGGGGTATCGCCAAGC-GGT-AAGGCACCTGGTTTTGGTCCAGGCA-TTCAGAGGTTCGAATCCTTTTACCCCAGCCA
tdbD8509|Helicobacter_pylori_26695|85962|Gln|TTG                                    -TGGGGTGTCGCCAAGC-GGT-AAGGCACCAGGTTTTGGTCCTGGCA-TTCCGAGGTTCGAATCCTTGCACCCCAGCCA
tdbD8510|Helicobacter_pylori_J99|85963|Gln|TTG                                      -TGGGGTGTCGCCAAGC-GGT-AAGGCACCAGGTTTTGGTCCTGGCA-TTCCGAGGTTCGAATCCTTGCACCCCAGCCA
tdbD8737|Lactobacillus_johnsonii_NCC_533|257314|Gln|TTG                             -TGGGTTATAGCCAAGT-GGT-AAGGCAATGGTTTTTGGTACCATCA-TGCGCTGGTTCGAATCCAGCTAACCCAA---
tdbD8685|Lactobacillus_plantarum_WCFS1|220668|Gln|TTG                               -TGGGTTATAGCCAAGT-GGT-AAGGCAATGGACTTTGACTCCATCA-TGCGCTGGTTCGAATCCAGCTAACCCAG---
tdbD8739|Leifsonia_xyli_subsp._xyli_str._CTCB07|281090|Gln|CTG                      -TGGGGTATGGTGTAATTGGC-AACACGGCTGATTCTGGTTCAGTTG-T-TCTTGGTTCGAGTCCAGGTACCCCAG---
tdbD8667|Leptospira_interrogans_serovar_Lai_str._56601|189518|Gln|TTG               -TGGGCTGTCGCCAAGT-GGT-AAGGCAGCGGTTTTTGGTATCGCCATTTCCTAGGTTCGAATCCTAGCAGCCCAGCCA
tdbD8530|Listeria_innocua_Clip11262|272626|Gln|TTG                                  -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGATTTTGATTCCGTCA-TGCGCTGGTTCGAATCCAGCTAGCCCAG---
tdbD8532|Listeria_monocytogenes_EGD-e|169963|Gln|TTG                                -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGATTTTGATTCCGTCA-TGCGCTGGTTCGAATCCAGCTAGCCCAG---
tdbD8755|Listeria_monocytogenes_str._4b_F2365|265669|Gln|TTG                        -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGATTTTGATTCCGTCA-TGCGCTGGTTCGAATCCAGCTAGCCCAG---
tdbD8757|Mesoplasma_florum_L1|265311|Gln|TTG                                        -TGGGCTATAGCCAAGC-GGT-AAGGCAAGGGACTTTGACTCCCTCA-TGCGCCGGTTCGAATCCTGCTAGCCCAACCA
tdbD8546|Mesorhizobium_loti_MAFF303099|266835|Gln|CTG                               -TGGGGAATAGGTTAAC-GGT-AGACCCACGGACTCTGACTCCGTTA-G-TCCTGGTTCGAATCCAGGTTCCCCAGCCA
tdbD8697|Mycobacterium_bovis_AF2122/97|233413|Gln|TTG                               -TCCGTCGTGGTGTAATCGGC-AGCACCTCTGATTTTGGTTCAGATA-G-TTCAGGTTCGAGTCCTGGCGACGGAG---
tdbD8500|Mycobacterium_leprae_TN|272631|Gln|TTG                                     -TCCGTCGTGGTGTAATCGGC-AGCACCTCTGATTTTGGTTCAGATA-G-TTCAGGTTCGAGTCCTGACGACGGAA---
tdbD8491|Mycobacterium_tuberculosis_CDC1551|83331|Gln|TTG                           -TCCGTCGTGGTGTAATCGGC-AGCACCTCTGATTTTGGTTCAGATA-G-TTCAGGTTCGAGTCCTGGCGACGGAG---
tdbD8724|Mycobacterium_tuberculosis_H37Rv|83332|Gln|TTG                             -TCCGTCGTGGTGTAATCGGC-AGCACCTCTGATTTTGGTTCAGATA-G-TTCAGGTTCGAGTCCTGGCGACGGAG---
tdbD2266|Mycoplasma_capricolum|2095|Gln|TTG                                         -TGGGCTATAGCCAAGC-GGT-AAGGCAAGGGACTTTGACTCCCTCA-TGCGCCGGTTCGAATCCTGCTAGCCCAACCA
tdbD8695|Mycoplasma_gallisepticum_R|233150|Gln|TTG                                  -TGGAATGTAGCCAAGC-GGA-AAGGCAATAGACTTTGACTCTATCA-TGCGATGGTTCGATCCCATCCATTCCAGCCA
tdbD8518|Mycoplasma_genitalium_G37|243273|Gln|TTG                                   -TGGGATGTAGCCAAGC-GGT-AAGGCAATAGACTTTGACTCTATCA-TGCGATGGTTCGATCCCATCCATCCCAGCCA
tdbD8519|Mycoplasma_pneumoniae_M129|272634|Gln|TTG                                  -TGGGATGTAGCCAAGC-GGT-AAGGCAATAGACTTTGACTCTATCA-TGCGATGGTTCGATCCCATCCATCCCAGCCA
tdbD8555|Mycoplasma_pulmonis_UAB_CTIP|272635|Gln|TTG                                -TGCCCCATAGCCAAGC-GGT-AAGGCATCGGTTTTTGGTACCGACA-TGCGTTAGTTCGAATCTAACTGGGGCAGCCA
tdbD8492|Neisseria_meningitidis_MC58|122586|Gln|TTG                                 -TGGGGAGTCGTCAAGC-GGTTAAGACACTGGATTTTGATTCCAGCA-TGCGAAGGTTCGAATCCTTCCTCCCCAGCCA
tdbD8493|Neisseria_meningitidis_Z2491|122587|Gln|TTG                                -TGGGGAGTCGTCAAGC-GGTTAAGACACTGGATTTTGATTCCAGCA-TGCGAAGGTTCGAATCCTTCCTCCCCAGCCA
tdbD8713|Nitrosomonas_europaea_ATCC_19718|228410|Gln|TTG                            -TGGGGAGTCGCCAAGT-GGT-AAGGCACCGGATTTTGATTCCGGCA-TTCGTAGGTTCGATCCCTACCTCCCCAGCCA
tdbD8554|Nostoc_sp._PCC_7120|103690|Gln|TTG                                         -TGGGGCGTCGCCAAGT-GGT-AAGGCATCGGGTTTTGGTCCCGACA-TCCCTAGGTTCGAATCCTAGCGCCCCAG---
tdbD8668|Oceanobacillus_iheyensis_HTE831|221109|Gln|TTG                             -TGGGCCATAGCCAAGC-GGT-AAGGCATCGGGTTTTGATCCCGTGT-ACCCTAGGTTCGAATCCTAGTGGCCCAGCCA
tdbD8723|Onion_yellows_phytoplasma_OY-M|262768|Gln|TTG                              -AGGCCCATAGCCAAGT-GGT-AAGGCAACGGACTTTGACTCCGTGA-TTCGTTGGTTCAAATCCAGCTGGGTCTGCCA
tdbD8520|Pasteurella_multocida_subsp._multocida_str._Pm70|272843|Gln|TTG            -TGGGGTATCGCCAAGC-GGT-AAGGCACCGGGTTTTGATCTCGGCA-TTCCTAGGTTCGAATCCTAGTACCCCAGCCA
tdbD8728|Photorhabdus_luminescens_subsp._laumondii_TTO1|243265|Gln|TTG              -TGGGGTATCGCCAAGC-GGT-AAGGCACCAGGTTTTGATCCTGGCA-TACCCAGGTTCGAATCCTGGTACCCCAGCCA
tdbD8741|Porphyromonas_gingivalis_W83|242619|Gln|TTG                                -TGTCTCATGGTGTAAT-GGT-AGCACAACAGGTTTTGGTTCTGTTT-G-TCAAGGTTCGAATCCTTGTGAGACAA---
tdbD8759|Propionibacterium_acnes_KPA171202|267747|Gln|CTG                           -TGGGGTATGGGGTAATTGGC-AGCCCGACTGATTCTGGTTCAGTTA-G-TCCAGGTTCGAGTCCTGGTACCCCAG---
tdbD8523|Pseudomonas_aeruginosa_PAO1|208964|Gln|TTG                                 -AGGGGCGTCGCCAAGC-GGT-AAGGCAGCAGGTTTTGATCCTGCCA-TGCGTTGGTTCGAATCCAGCCGCCCCTGCCA
tdbD8716|Pseudomonas_syringae_pv._tomato_str._DC3000|223283|Gln|TTG                 -AGGGGCGTCGCCAAGC-GGT-AAGGCAGCAGGTTTTGATCCTGCCA-TGCGTTGGTTCGAATCCAGCCGCCCCTGCCA
tdbD8551|Ralstonia_solanacearum_GMI1000|267608|Gln|TTG                              -AGGGGAGTCGCCAAGTTGGTTAAGGCACCGGATTTTGATTCCGGCA-TGCGAGGGTTCGAGTCCTTCCTCCCCTGCCA
tdbD8711|Rhodopirellula_baltica_SH_1|243090|Gln|TTG                                 -TACCCCGTGGTGTAATTGGC-AACACAGCTGGTTTTGGTCCAGCCA-T-TCTAGGTTCGAGTCCTAGCGGGGTAG---
tdbD8730|Rhodopseudomonas_palustris_CGA009|258594|Gln|CTG                           -TGGGGAATGGTGTAAT-GGT-AGCACAACAGACTCTGACTCTGTTT-G-TCTTGGTTCGAATCCAGGTTCCCCAGCCA
tdbD8541|Rickettsia_conorii_str._Malish_7|272944|Gln|TTG                            -TGGGACGTCGCCAAGT-GGT-AAGGCAACGGTTTTTGGTATCGTCA-T-CGGAGGTTCGAATCCTCCCGTCCCAGCCA
tdbD8640|Rickettsia_prowazekii_str._Madrid_E|272947|Gln|TTG                         -TGGGACGTCGCCAAGT-GGT-AAGGCAACGGTTTTTGGTATCGTCA-TACGGAGGTTCGAATCCTCCCGTCCCAGCCA
tdbD8743|Rickettsia_typhi_str._Wilmington|257363|Gln|TTG                            -TGGGACGTCGCCAAGT-GGT-AAGGCAACGGTTTTTGGTATCGTCA-TGCGGAGGTTCGAATCCTCCCGTCCCAGCCA
tdbD8559|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|220341|Gln|TTG -TGGGGTATCGCCAAGC-GGT-AAGGCACCGGTTTTTGATACCGGCA-TTCCCTGGTTCGAATCCAGGTACCCCAGCCA
tdbD8709|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|209261|Gln|TTG  -TGGGGTATCGCCAAGC-GGT-AAGGCACCGGTTTTTGATACCGGCA-TTCCCTGGTTCGAATCCAGGTACCCCAGCCA
tdbD8550|Salmonella_typhimurium_LT2|99287|Gln|TTG                                   -TGGGGTATCGCCAAGC-GGT-AAGGCACCGGTTTTTGATACCGGCA-TTCCCTGGTTCGAATCCAGGTACCCCAGCCA
tdbD8672|Shewanella_oneidensis_MR-1|211586|Gln|TTG                                  -TGGGGTATCGCCAAGC-GGT-AAGGCACCGGGTTTTGATCCCGGCA-TACCTAGGTTCGAATCCTAGTACCCCAGCCA
tdbD8673|Shigella_flexneri_2a_str._301|198214|Gln|TTG                               -TGGGGTATCGCCAAGC-GGT-AAGGCACCGGTTTTTGATACCGGCA-TTCCCTGGTTCGAATCCAGGTACCCCAGCCA
tdbD8560|Sinorhizobium_meliloti_1021|266834|Gln|CTG                                 -TGGGGAATAGGTTAAC-GGT-AGACCAGCGGACTCTGACTCCGTTA-G-TCCTGGTTCGAATCCAGGTTCCCCAGCCA
tdbD8731|Staphylococcus_aureus_subsp._aureus_MRSA252|282458|Gln|TTG                 -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-CTCGTTGGTTCGAATCCAGCTAGCCCAG---
tdbD8643|Staphylococcus_aureus_subsp._aureus_MW2|196620|Gln|TTG                     -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-CTCGTTGGTTCGAATCCAGCTAGCCCAG---
tdbD8497|Staphylococcus_aureus_subsp._aureus_N315|158879|Gln|TTG                    -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-CTCGTTGGTTCGAATCCAGCTAGCCCAG---
tdbD8687|Staphylococcus_epidermidis_ATCC_12228|176280|Gln|TTG                       -TGGGCTATAGCCAAGC-GGT-AAGGCAACGGACTTTGACTCCGTCA-TGCGCTGGTTCGAATCCAGCTAGCCCAG---
tdbD8675|Streptococcus_agalactiae_2603V/R|208435|Gln|TTG                            -TGGGGTATAGCCAAGC-GGT-AAGGCAAGGGACTTTGACTCCCTCA-TGCGTTGGTTCGAATCCAGCTACCCCAG---
tdbD8645|Streptococcus_agalactiae_NEM316|211110|Gln|TTG                             -TGGGGTATAGCCAAGC-GGT-AAGGCAAGGGACTTTGACTCCCTCA-TGCGTTGGTTCGAATCCAGCTACCCCAG---
tdbD8676|Streptococcus_mutans_UA159|210007|Gln|TTG                                  -TGGGGTATAGCCAAGC-GGT-AAGGCAAGGGACTTTGACTCCCTCA-TGCGTTGGTTCGAATCCAGCTACCCCAG---
tdbD8538|Streptococcus_pneumoniae_TIGR4|170187|Gln|TTG                              -TGGGGTATAGCCAAGC-GGT-AAGGCAAGGGACTTTGACTCCCTCA-TGCGTTGGTTCGAATCCAGCTACCCCAG---
tdbD8537|Streptococcus_pyogenes_M1_GAS|160490|Gln|TTG                               -TGGGGTATAGCCAAGC-GGT-AAGGCAAGGGACTTTGACTCCCTCA-TGCGTTGGTTCGAATCCAGCTACCCCAG---
tdbD8646|Streptococcus_pyogenes_MGAS315|198466|Gln|TTG                              -TGGGGTATAGCCAAGC-GGT-AAGGCAAGGGACTTTGACTCCCTCA-TGCGTTGGTTCGAATCCAGCTACCCCAG---
tdbD8700|Streptococcus_pyogenes_SSI-1|193567|Gln|TTG                                -TGGGGTATAGCCAAGC-GGT-AAGGCAAGGGACTTTGACTCCCTCA-TGCGTTGGTTCGAATCCAGCTACCCCAG---
tdbD8706|Streptomyces_avermitilis_MA-4680|227882|Gln|CTG                            -TGGGCTATGGTGTAATTGGC-AACACGACGGTTTCTGGTTCCGTTG-T-TCTAGGTTCGAGTCCTGGTAGCCCAG---
tdbD8670|Streptomyces_coelicolor_A3(2)|100226|Gln|CTG                               -TGGCCTATGGTGTAATTGGC-AGCACGACTGATTCTGGTTCAGTTA-G-TCTAGGTTCGAGTCCTGGTAGGCCAG---
tdbD2275|Streptomyces_lividans|1916|Gln|CTG                                         -TGGCCTATGGTGTAATTGGC-AGCACGACTGATTCTGGTTCAGTTA-G-TCTAGGTTCGAGTCCTGGTAGGCCAG---
tdbD2273|Streptomyces_rimosus|1927|Gln|CTG                                          GTGGGCTATGGTGTAATTGGC-AGCACGACTGATTCTGGTTCAGTTA-G-TCTAGGTTCGAGTCCTGGTAGCCCAG---
tdbD8744|Symbiobacterium_thermophilum_IAM_14863|292459|Gln|TTG                      -TGGGGCGTAGCCAAGCTGGT-AAGGCACGGGACTTTGACTCCCGCA-TGCGTAGGTTCGAATCCTGCCGCCCCAGCCA
tdbD8524|Synechocystis_sp._PCC_6803|1148|Gln|TTG                                    -TGGGGTGTAGCCAAGC-GGT-AAGGCAGCGGGTTTTGGTCCCGCCA-TTCCTAGGTTCGAATCCTAGCACCCCA----
tdbD8650|Thermoanaerobacter_tengcongensis_MB4|273068|Gln|TTG                        -TGGGATGTAGCCAAGC-GGT-AAGGCACCAGACTTTGACTCTGGCA-TGCGCAGGTTCGAATCCTGCCATCCCAGCCA
tdbD8647|Thermosynechococcus_elongatus_BP-1|197221|Gln|TTG                          -TGGGGTGTCGCCAAGC-GGT-AAGGCAGCGGGTTTTGGTCCCGCCA-TTCGGGGGTTCGAATCCTCCCGCCCCAG---
tdbD8525|Thermotoga_maritima_MSB8|243274|Gln|CTG                                    -TGGGAGGTCGTCTAAC-GGT-AGGACGGCGGACTCTGGATCCGCTG-G-TGGAGGTTCGAGTCCTCCCCTCCCAGCCA
tdbD8761|Thermus_thermophilus_HB27|262724|Gln|CTG                                   CTGGGGTGTCGTCTAAG-GGT-AGGACAGCGGACTCTGGATCCGCCG-G-TCGTGGTTCGAATCCACGCACCCCAGCCA
tdbD8762|Treponema_denticola_ATCC_35405|243275|Gln|TTG                              -TGGGACGTCGGCAAGT-GGT-AAGCCAACGGCTTTTGGTGCCGTCATTCCGTAGGTTCGAATCCTACCGTCCCAG---
tdbD8522|Treponema_pallidum_subsp._pallidum_str._Nichols|243276|Gln|TTG             -TGGGACGTCGGCAAGT-GGT-AAGCCAACGGTTTTTGGTACCGTCATTCCGTAGGTTCGAATCCTACCGTCCCAG---
tdbD8690|Tropheryma_whipplei_str._Twist|203267|Gln|TTG                              -TCCGCTTTGGTGTAAC-GGC-AGCACAGCAGCCTTTGGAGCTGTTG-G-TCTAGGTTCGAATCCTAGAGGCGGAG---
tdbD8691|Tropheryma_whipplei_TW08/27|218496|Gln|TTG                                 -TCCGCTTTAGTGTAAC-GGC-AGCACAGCAGCCTTTGGAGCTGTTG-G-TCTAGGTTCGAATCCTAGAGGCGGAG---
tdbD8501|Ureaplasma_parvum_serovar_3|38504|Gln|TTG                                  -TGGCCTGTAGCCAAGA-GGT-AAGGCAGAAGATTTTGATTCTTCCA-TGCGTAGGTTCGATCCCTACCAGGCCAGCCA
tdbD8495|Vibrio_cholerae_O1_biovar_El_Tor_str._N16961|243277|Gln|TTG                -AGGTCTGTCGCCAAGC-GGT-AAGGCAACGGGTTTTGATCCCGTCA-TACCTAGGTTCGAATCCTAGCAGACCTGCCA
tdbD8764|Wolbachia_endosymbiont_of_Drosophila_melanogaster|163164|Gln|TTG           -TGGGGTGTAGCCAAGT-GGT-AAGGCAGCGGTTTTTGATACCGCCA-CGCGAAGGTTCGAATCCTTCCACCCCAGCCA
tdbD8654|Xanthomonas_axonopodis_pv._citri_str._306|190486|Gln|CTG                   -TGCCCCGTCGCCAAGC-GGT-AAGGCACCTGACTCTGACTCAGGCA-TTCGGTGGTTCGAATCCATCCGGGGCAGCCA
tdbD8652|Xanthomonas_campestris_pv._campestris_str._ATCC_33913|190485|Gln|CTG       -TGCCCCGTCGCCAAGC-GGT-AAGGCACCTGACTCTGACTCAGGCA-TTCGGTGGTTCGAATCCATCCGGGGCAGCCA
tdbD8527|Xylella_fastidiosa_9a5c|160492|Gln|CTG                                     -TGCCCCGTAGCCAAGT-GGT-AAGGCATCTGACTCTGACTCAGACA-TTCGTTGGTTCGAATCCATCCGGGGCAGCCA
tdbD8693|Xylella_fastidiosa_Temecula1|183190|Gln|CTG                                -TGCCCCGTAGCCAAGT-GGT-AAGGCATCTGACTCTGACTCAGACA-TTCGTTGGTTCGAATCCATCCGGGGCAGCCA
tdbD8746|Yersinia_pestis_biovar_Microtus_str._91001|229193|Gln|TTG                  -TGGGATATCGCCAAGC-GGT-AAGGCACCAGGTTTTGATCCTGGCA-TTCCCAGGTTCGAATCCTGGTATCCCAGCCA
tdbD8548|Yersinia_pestis_CO92|214092|Gln|TTG                                        -TGGGATATCGCCAAGC-GGT-AAGGCACCAGGTTTTGATCCTGGCA-TTCCCAGGTTCGAATCCTGGTATCCCAGCCA
tdbD8659|Yersinia_pestis_KIM|187410|Gln|TTG                                         -TGGGATATCGCCAAGC-GGT-AAGGCACCAGGTTTTGATCCTGGCA-TTCCCAGGTTCGAATCCTGGTATCCCAGCCA
tdbD8749|Yersinia_pseudotuberculosis_IP_32953|273123|Gln|TTG                        -TGGGATATCGCCAAGC-GGT-AAGGCACCAGGTTTTGATCCTGGCA-TTCCCAGGTTCGAATCCTGGTATCCCAGCCA
#=GC SS_cons                                                                        .(((((((..((((.........)))).(((((.......)))))......(((((.......))))))))))))....
#=GC SN                                                                             .0000000..1111.........1111.22222.......22222......33333.......333330000000....

#=GF CS                                                                             79 columns, 21 paired, 19 covariant; 4 stems
//