# STOCKHOLM 1.0 ACTINOPTERYGII M #=GF AU Infernal 1.0.1 #=GC CS 4445453...222..........222..34322.......22343.....35433.........334533545444. #=GC BP +++++++..++++..........++++.+++++.......+++++.....+++++.........++++++++++++. NC_005451_M_4000_4069_p AGUAAAGUCAGCUAAUUAA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_012576_M_4002_4071_p AGUAAAGUCAGCUAAUUAA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_012646_M_4006_4075_p AGUAAAGUCAGCUAAUUAA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_005795_M_4001_4070_p AGUAAAGUCAGCUAAUUAA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_004743_M_4001_4070_p AGUAAAGUCAGCUAAUUAA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_005252_M_4052_4121_p AGUAAAGUCAGCUAAUUAA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_004420_M_4002_4071_p AGUAAAGUCAGCUAAUUAA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_004419_M_3995_4064_p AGUAAAGUCAGCUAAUUAA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUUUAUUA NC_005834_M_4000_4069_p AGUAAAGUCAGCUAAUUAA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUUUAUUA NC_004742_M_4013_4081_p AGUAAGGUCAGCUAAACA-....AGCUCUUGGGCCCAUACCCCGA.AAAUGUUGGuu..aaAAUCCUUCCCUCACUA NC_008131_M_3992_4060_p AGUAAAGUCAGCUAAUAA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUAGGuu..aaACUCCUUCCCUUACUA NC_004744_M_3983_4051_p AGUAAAGUCAGCUAAUAA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUAGGuu..aaACUCCUUCCCUUACUA NC_008104_M_3984_4052_p AGUAAAGUCAGCUAAUAA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUAGGuu..aaACUCCUUCCCUUACUA NC_005800_M_3995_4063_p AGUAAAGUCAGCUAAUAA-....AGCUUUUGGGCCCAUACCCCGA.AAAUGUAGGuu..aaAGUCCUUCCUUUGCUU NC_005796_M_3997_4065_p AGUAAAGUCAGCUAAUUA-....AGCUUUUGGGCCCAUACCCCAA.AAAUGUUGGuu..aaAAUCCUUCCUCUACUA NC_006531_M_3990_4058_p AGUAAAGUCAGCUAAGUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUGCUA NC_006532_M_3989_4057_p AGUAAAGUCAGCUAAGCA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUGCUA NC_006533_M_3991_4059_p AGUAAAGUCAGCUAAGCA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUGCUA NC_006543_M_3990_4058_p AGCAAAGUCAGCUAAAUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_006534_M_3984_4052_p AGUAAAGUCAGCUAAAUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_006535_M_3984_4052_p AGUAAAGUCAGCUAAAUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_006537_M_3991_4059_p AGUAAAGUCAGCUAAACA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUGCUA NC_006538_M_3991_4059_p AGUAAAGUCAGCUAAGCA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUGCUA NC_006539_M_3993_4061_p AGUAAAGUCAGCUAAACA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_002707_M_3983_4051_p AGUAAAGUCAGCUAAACA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUGCUA NC_011575_M_3993_4061_p AGUAAAGUCAGCUAAACA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_006536_M_3988_4056_p AGUAAAGUCAGCUAAACA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUGCUA NC_006540_M_3989_4057_p AGUAAAGUCAGCUAAACA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_006541_M_3989_4057_p AGUAAAGUCAGCUAAACA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUGCUA NC_006542_M_3994_4062_p AGUAAAGUCAGCUAAGUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUGCUA NC_006544_M_3990_4058_p AGUAAAGUCAGCUAAAUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_006545_M_3989_4057_p AGUAAAGUCAGCUAAAUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_006546_M_3993_4061_p AGUAAAGUCAGCUAAGCA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUGCUA NC_006547_M_3988_4056_p AGUAAAGUCAGCUAAGUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUGCUA NC_013435_M_3993_4061_p AGUAAAGUCAGCUAAACA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_013607_M_3984_4052_p AGUAAAGUCAGCUAAUUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaACUCCUUCCUUUACUA NC_013633_M_3971_4039_p AGUAAAGUCAGCUAAUUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaACCCCUUCCUUUACUA NC_013618_M_3976_4044_p AGUAAAGUCAGCUAAAAA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCCUUACUA NC_013606_M_3968_4036_p AGUAAAGUCAGCUAAAAA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaACCCCUUCCUUUACUA NC_013632_M_4001_4069_p AGUAAAGUCAGCUAAAUA-....AGCUCUUGGGCCCAUACCCCAA.GCAUGUUGGuu..aaAAUCCUUCCCUUGCUA NC_002761_M_3977_4045_p AGUAAGAUCAGCUAAUUA-....AGCUUUCGGGCCCAUACCCCGG.AAAUGAUGGug..aaACUCCUUCCCUUACUA NC_013629_M_3993_4061_p AGUAAAGUCAGCUAAAAA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_013630_M_4012_4080_p AGUAAAGUCAGCUAAACA-....AGCUCUUGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_013611_M_3965_4033_p AGUAAAGUCAGCUAAACA-....AGCUCUCGGGCCCAUACCCCUA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_013608_M_3969_4037_p AGUAAAGUCAGCUAAACA-....AGCUCUUGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_005299_M_9245_9313_p AGUAAAGUCAGCUAAAUA-....AGCUCUUGGGCCCAUACCCCUA.ACAUGUAGGau..aaCACCCUAUCUUUACUA NC_013601_M_3958_4026_p AGUAAAGUCAGCUAAAUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaACUCCUUCCUUUACUA NC_013612_M_9146_9214_p AGUACAGUCAGCUAAUUA-....AGCUCUCGGGCUCAUGUCCCGC.UCAUGUUGGuu..aaAUUCCUCCCUAUACUG NC_013622_M_3969_4037_p AGUAAAGUCAGCUAAACA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaACCCCUUCCUUUACUA NC_013602_M_3981_4049_p AGUAAAGUCAGCUAAAUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_013617_M_4008_4076_p AGUAAAGUCAGCUAAACA-....AGCUAUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCCUCCUUUACUA NC_013614_M_3998_4066_p AGUAAAGUCAGCUAAGUA-....AGCUUUCGGGCCCAUACCCCGA.AUAUGUUGGuu..aaAGUCCCUCCUUUACUG NC_013613_M_3933_4001_p AGUAAAGUCAGCUAAACA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_004417_M_3942_4010_p AGUAAAAUCAGCUAAUUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCUUUUACUA NC_013610_M_3939_4007_p AGUAAGGUCAGCUAAAUA-....AGCUUUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaUAUCCUUCCUUUACUA NC_013631_M_3971_4039_p AGUAAAGUCAGCUAAAUA-....AGCUCUCGGGCCCAUACCCCGA.AUAUGUUGGuu..aaACCCCUUCCUUUACUA NC_013624_M_3989_4057_p AGUAAAGUCAGCUAAAAA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..agAAUCCUUCCUUUACUA NC_013626_M_3992_4060_p AGUAGAGUCAGCUAAAAA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_013620_M_3957_4025_p AGUAAAGUCAGCUAAACA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaACUCCCUCCUUUACUA NC_013621_M_3980_4048_p AGUAAAGUCAGCUAAUAA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_013623_M_3985_4053_p AGUAAAGUCAGCUAAUAA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_013615_M_4122_4190_p AGUAAAGUCAGCUAAACA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_013625_M_3979_4047_p AGUAAAGUCAGCUAAAUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUCACUA NC_013635_M_3990_4058_p AGUAAAGUCAGCUAAUUA-....AGCUUUUGGGCCCAUACCCCGA.ACAUGACGGuu..aaAAUCCUUCCUUUACUA NC_005802_M_3988_4056_p AGUAAGGUCAGCUAAUUA-....AGCUUUCGGGCCCAUACCCCGA.ACAUGAUGGuu..aaAAUCCUUCCUUUACUA NC_005298_M_10466_10534_p AGUAAAGUCAGCUAAUAA-....AGCUCUUGGGCCCAUGCCCCUA.GUAUGUCGGuu..aaAGUCCUUCCUCUACUA NC_013627_M_3993_4061_p AGUAAGGGCAGCUAAAAA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUGGGuu..aaAAUCCCUCCCUCACUA NC_013436_M_3975_4043_p AGUAAGGUCAGCUAAAAA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCCUUACUA NC_013628_M_3974_4042_p AGUAAAGUCAGCUAAAGA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..agAAUCCUUCCCUUACUA NC_013634_M_4005_4074_p AGUAAAGUCAGCUAAUAAA....AGCUCUUGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_013605_M_3996_4064_p AGUAAGGUCAGCUAAAAA-....AGCUCUUGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_005805_M_4007_4076_p AGUAAAGUCAGCUAAUAAA....AGCUCUUGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_006913_M_3956_4025_p AGUAAGGUAAGCUAAAUUA....AGCUAUCGGGCUCAUACCCCGA.ACAUGUUGGuu..aaACCCCUUCCCUUAUUA NC_009575_M_3978_4046_p AGUAAGGUCAGCUAAAUA-....AGCUCUCGGGCCCAUACCCCGA.GUAUGUCGGuu..aaAAUCCUUCCCCUAUUA NC_009576_M_3977_4045_p AGUAAGGUCAGCUAAAUA-....AGCUUUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCCCUACUA NC_009577_M_3975_4043_p AGUAAGGUCAGCUAAGUA-....AGCUUUCGGGCCCAUACCCCGG.ACAUGUUGGuu..aaAAUCCUUCCCCUACUA NC_009578_M_3976_4044_p AGUAAGGUCAGCUAAGUA-....AGCUUUCGGGCCCAUACCCCGG.ACAUGUUGGuu..aaAAUCCUUCCCCUACUA NC_008107_M_3978_4046_p AGUAAGGUCAGCUAAAUA-....AGCUUUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCCCUACUA NC_009580_M_3975_4043_p AGUAAGGUCAGCUAAAUA-....AGCUUUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCCUCCCCUACUA NC_009583_M_3981_4050_p AGUAAGGUCAGCUAAUUUA....AGCUUUCGGGCCCAUACCCCGG.AUAUGAUGGuu..aaAGUCCUUCCCGUACUA NC_009582_M_3980_4048_p AGUAAGGUCAGCUAAAUA-....AGCUUUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCCCUACUA NC_009586_M_3976_4044_p AGUAAGGUCAGCUAAAUA-....AGCUUUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAACCCUUCCCCUACUA NC_009590_M_3981_4049_p AGUAAUGUCAGCUAAAAA-....AGCUUUUGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCCUUACUA NC_009591_M_3983_4051_p AGUAAUGUCAGCUAAAAA-....AGCUUUUGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCCUUACUA NC_009592_M_3981_4051_p UAGUAAGUCAGCUAAAGUA....AGCUUUCGGGCCCAUACCCCGG.ACAUGUUGGuu.aaaAUCCUUCCCCUGCUAA NC_009587_M_3980_4048_p AGUAAGGUCAGCUAAAUA-....AGCUUUCGGGCCCAUACCCCGG.ACAUGUUGGuu..aaAAUCCUUCCCCUACUG NC_002616_M_3984_4052_p AGUAAGGUCAGCUAAAUA-....AGCUCUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAGUCCUUCCCCUGCUA NC_006917_M_3950_4018_p AGUAGGGUCAGCUAAAUA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..agAAUCCUUCCUCUACUA NC_009589_M_3968_4036_p AGUAGAGUCAGCUAAAUA-....AGCUUUUGGGCCCAUACCCCAA.AUAUGUUGGuu..aaAAUCCUUCCUCUGCUA NC_009593_M_3977_4045_p AGUAAGGUCAGCUAAAUA-....AGCUUUCGGGCCCAUACCCCGG.ACAUGUUGGuu..aaAAUCCUUCCCCUACUA NC_007889_M_3955_4023_p AGUAAAGUCAGCUAAUAA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_009579_M_3977_4045_p AGUAAGGUCAGCUAAAUA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAACCCUUCCCAUACUA NC_009581_M_3981_4049_p AGUAAGGUCAGCUAAAUA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..agAAUCCUUCCCAUACUA NC_003097_M_3982_4050_p AGUAAGGUCAGCUAAAUA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCCAUACUA NC_009584_M_3976_4044_p AGUAAAGUCAGCUAAAUA-....AGCUUUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCCUUACUA NC_009585_M_3994_4062_p AGUAAAGUCAGCUAAACA-....AGCUUUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCCUUACUA NC_006919_M_3955_4023_p AGUAGAGUCAGCUAAAUA-....AGCUUUCGGGCCCAUACCCCGA.ACAUGUUGGuu..aaAAUCCUUCCCCUACUA NC_005798_M_4002_4070_p AGUAAAGUCAGCUAAUUA-....AGCUUUUGGGCCCAUACCCCAA.AUAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_005803_M_4003_4071_p AGUAAAGUCAGCUAAUUA-....AGCUUUUGGGCCCAUACCCCAA.AUAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_005804_M_3998_4066_p AGUAAAGUCAGCUAAUAA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCCUCCUUUACUA NC_005799_M_3999_4067_p AGUAAAGUCAGCUAAUUA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCCUCCUUUACUA NC_004593_M_3934_4002_p AGUACAGUCAGCUAAUCA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGAAGGuu..aaAGUCCUUUCUUUACUA NC_004592_M_3931_3999_p AGUAAGGUCAGCUAAUAA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGAUGGuu..aaAUCCCCUCCCUUACUA NC_008128_M_3960_4028_p AGUAAAGUCAGCUAAUUA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaACUCCUUCCUUUGCUA NC_004391_M_3957_4025_p AGUAAAGUCAGCUAAUUA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaACUCCUUCCUUUACUA NC_004393_M_3979_4047_p AGUAAAAUCAGCUAAUUA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCUUCUACUA NC_003188_M_3980_4048_p AGUAAAAUCAGCUAAUUA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCUUCUACUA NC_008126_M_3965_4033_p AGUAAUGUCAGCUAAAUA-....AGCUCUUGGGCCCAUACCCCAA.AUAUGUUGGuu..agAACCCUUCCAUCACUA NC_008127_M_3980_4048_p AGUAAUGUCAGCUAAACA-....AGCUCUUGGGCCCAUACCCCAA.AUAUGUUGGuu..aaACCCCUUCCAUCACUA NC_003189_M_3976_4045_p AGUAAAGUCAGCUAAAUUA....AGCUCUUGGGCCCAUACCCCAA.ACAUGUAGGuu..aaACUCCUUCCUUUGCUA NC_004394_M_3980_4049_p AGUAAAGUCAGCUAAAUUA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAUUCCUUCCUUUACUA NC_004395_M_3992_4060_p AGUAAGGUCAGCUAAUUA-....AGCUCUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_004392_M_3973_4041_p AGUAAAGUCAGCUAAUUA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaACUCCUUCCUUUGCUA NC_003187_M_3961_4029_p AGUAAAGUCAGCUAAUUA-....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaACUCCUUCCUUUGCUA NC_004386_M_3979_4047_p AGUAAGGUCAGCUAAAUA-....AGCUCUUGGGCCCAUACCCCGA.AAAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_011174_M_3974_4043_p AGUAAGGUCAGCUAAGUCA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_004385_M_3967_4035_p AGUAAGGUCAGCUAAACA-....AGCUUUUGGGCCCAUACCCCAA.CCAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_011178_M_3976_4045_p AGUAAGGUCAGCUAAAUCA....AGCUUUUGGGCCCAUACCCCAA.ACAUGAUGGuu..aaAAUCCUUCCUUUACUA NC_011172_M_3948_4017_p AGUAAAGUCAGCUAAUUAA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUCUACUA NC_012976_M_3942_4011_p AGUAAAGUCAGCUAAUAAA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaAAUCCUUCCUUUGCUA NC_012981_M_3946_4015_p AGUAAAGUCAGCUAAUAAA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..aaACUCCUUCCUUUACUA NC_004387_M_3947_4016_p AGUAAAGUCAGCUAAUAUA....AGCUUUUGGGCCCAUACCCCAA.ACAUGUUGGuu..agAAUCCUUCCUUUGCUA NC_012979_M_3952_4021_p AGUAAAGUCAGCUAAUAAA....AGCUUUUGGGCCCAUACCCCAA.AUAUGUUGGuu..aaAAUCCUUCCUUUGCUA NC_012975_M_3954_4023_p 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NC_007882_M_3973_4042_p AGUAGAGUAAGCUAAUUA-....AGCUUUUGGGUCCAUACCCCAAuCAAUGUUGGuu..aaAGUCCUUCCUCUGCUA NC_007891_M_3967_4036_p AGCAGAGUAAGCUAAUUA-....AGCUUUUGGGUCCAUACCCCAAuCAAUGUUGGuu..aaAGUCCUUCCUCUGCUA NC_007892_M_3985_4053_p AGUAAGAUCAGCUAAUUA-....AGCUCUUGGGUCCAUACCCCAU.CAAUGUUGGuu..aaAGUCCUUCUCUUACUA NC_004692_M_3952_4020_p AGUAAGGUCAGCUAAAAUA....AGCUACCAGGCCCAUACCCUGG.AAAUGUGGUu...uaACAUCCGCCCUUAUUG NC_004701_M_3965_4034_p AGUGAAGUCAGCUAACACA....AGCUUUCGGGCCCAUACCCCGA.AAAUGUAGGuu..aaACCCCUACCGUCACUA NC_008232_M_3957_4025_p AGUAAGAUCAGCUAAUAA-....AGCUUUGGGGCCCAUACCCCAA.CAAUGUGGGuu..aaAAUCCUUCUCUUACCA NC_004697_M_3971_4040_p AGUAAGAUCAGCUAAAUUA....AGCUUUUGGGCCCAUACCCCAA.AAAUGUAGGuu..aaAAUCCUUCUCUUACCA NC_004698_M_3951_4020_p AGUAAGAUAAGCUAAAUAA....AGCUUUUGGGCCCAUACCCCAA.AAAUGUAGGuu..aaAUUCCUUCUCUUACUA NC_008280_M_3981_4049_p GAUGGGGUCAGCUAAUUA-....AGCUUUUGGGCCCAUACCCCAA.AAAUGUAGGuu..uaAACCCUUCUCUUACCA NC_003489_M_4833_4902_p AGUAAGAUCAGCUAAAUUA....AGCUUUUGGGCCCAUACCCCAA.AAAUGUAGGuu..aaAACCCUUCUCUUACCA NC_006381_M_3968_4037_p AGUAAGAUCAGCUAAAUCA....AGCUUUUGGGCCCAUACCCCAA.AAAUGUAGGuu..aaAAUCCUUCUCUUACCA NC_012707_M_4010_4078_p AGUAAAGUCAGCUAAACA-....AGCAUUCGGGCCCAUACCCCGA.GAAUGUGGGuu..aaACCCCCUCCUUUACUA NC_005145_M_3999_4067_p AGUAAAGUCAGCUAAUUA-....AGCUUUUGGGCCCAUACCCCAA.AAAUGUUGGuu..aaAAUCCUUCCUUUACUA NC_012705_M_4031_4099_p AGUAAAGUCAGCUAAAAA-....AGCUUUCGGGCCCAUACCCCGA.GAAUGUGGGuu..aaACCCCCUCCUUUACUA NC_012717_M_4030_4098_p AGUAAAGUCAGCUAAACA-....AGCUUUCGGGCCCAUACCCCGA.GAAUGUGGGuu..aaACCCCCUCCUUUGCUA NC_012710_M_4010_4078_p AGUAAAGUCAGCUAAACA-....AGCUUUCGGGCCCAUACCCCGA.GAAUGUGGGuu..aaACCCCCUCCUUCACUA NC_012711_M_4010_4078_p AGUAAAGUCAGCUAAACA-....AGCUUUCGGGCCCAUACCCCGA.GAAUGUGGGcc..aaACCCCCUCCUUUACUA NC_012712_M_4010_4078_p AGUAAAGUCAGCUAAACA-....AGCUUUCGGGCCCAUACCCCGA.GAAUGUGGGuu..aaACCCCCUCCUUUACUA NC_012713_M_4013_4081_p AGUAAAGUCAGCUAAACA-....AGCUUUCGGGCCCAUACCCCGA.GAAUGUGGGuu..aaACCCCCUCCUUUACUA NC_012714_M_4027_4095_p AGUAAGGUCAGCUAAACA-....AGCUUUCGGGCCCAUACCCCGA.GAAUGUGGGuu..aaACCCCCUCCCUUGCUA NC_012715_M_4021_4089_p AGUAAGGUCAGCUAAAUA-....AGCUCUCGGGCCCAUACCCCGA.AAAUGUGAGuu..aaACCCCCUCCCUUACUA NC_010570_M_3972_4040_p AGUAAAGUCAGCUAAACA-....AGCUUUCGGGCCCAUACCCCGA.GAAUGUGGGuu..aaAACCCCUCCUCUACUA NC_003095_M_3995_4063_p AGUAAAGUCAGCUAAAUA-....AGCUUUCGGGCCCAUACCCCGA.AAAUGUGGGuu..aaAUCCCCUCCUCUACUA NC_007012_M_4974_5042_p AGUAAAGUCAGCUAAACA-....AGCUUUCGGGCCCAUACCCCGA.GAAUGUGGGuu..aaAACCCCUCCUUCACUA NC_003096_M_3967_4035_p AGUAAAGUAAGCUAAAAA-....AGCUUUCGGGCCCAUACCCCGA.GAAUGCGGAcg..aaACCCCCGUCUUUACCU NC_005251_M_3967_4036_p AGUAAGGUCAGCUAAUUUA....AGCUUUUGGGCCCAUACCCCAA.AUAUGUUGGuu..aaAAUCCUUCCCCUACUA NC_001778_M_3921_3989_p AGUAAGGUCAGCUGAUUA-....AGCUUUUGGGCCCAUACCCCAA.AUAUGUUGGuu..aaAAUCCUUCCCCUACUA NC_004418_M_3918_3987_p AGUAAGGUCAGCUAAUUUA....AGCUUUUGGGCCCAUACCCCAA.AUAUGUUGGuu..aaAAUCCUUCCCUUACUA #=GC SS_cons (((((((,,<<<<______....>>>>,<<<<<_______>>>>>.,,,,<<<<<......___>>>>>))))))): #=GC RF aGuaaggUAggcUAAuuaa....AgccauuGGgcUCAUAccCCaa.AaAUGgagg......AuUccucCccuuaCua #=GC SN 0000000..1111..........1111.22222.......22222.....33333.........333330000000. #=GF CS 77 columns, 21 paired, 20 covariant; 4 stems //