# STOCKHOLM 1.0 BACTERIAL Leu #=GC CS 3245664..242...........242.56444.......44465.....................3652.........25634665423.... #=GC BP +++++++..+++...........+++.+++++.......+++++.....................+++++.......++++++++++++.... tdbD1509|Acholeplasma_laidlawii|2148|Leu|TAA GCCCGGGTGGTGAAATCGGTAGACACGCAGGACTTAAAATCCTGTGGCA---TAAA---AGCCATGTCGGTTCAAGTCCGACCCCGGGCACCA tdbD7211|Acinetobacter_sp._ADP1|62977|Leu|TAA GCCCGGGTGGTGAAATAGGTAGACACAGGGGATTTAAAATCCCCCGCCC---TCA----AAGCGTGCCGGTTCGAGTCCGGCCCCGGGCACCA tdbD1541|Aeromonas_hydrophila|644|Leu|CAG GCGAAGGTGGCGGAATTGGTAGACGCGCTAGCTTCAGGTGTTAGTGCCC---CCC----GGGTGTGAGGGTTCGAGTCCCTCTCTTCGCACCA tdbD6659|Agrobacterium_tumefaciens_str._C58|176299|Leu|TAA GCCCGCATGGTGAAATTGGTAAACACATCGCACTTAAAATGCGCCGCC----TCT-----GGCTTGCCGGTTCAAGTCCGGCTGCGGGCACCA tdbD6583|Aquifex_aeolicus_VF5|224324|Leu|TAA GGGGGTGTGGCGGAATTGGCAGACGCGGGGGACTTAAAATCCCCTGGGCG--AAA---AGCCCGTGAGGGTTCGACTCCCTCCACCCCCACCA tdbD1543|Azoarcus_sp._BH72|62928|Leu|TAA GCCGGGCTGGCGGAATCGGTAGACACAACGGATTTAAAATCCTGCGGTAG--GTGA--CTACCGTGCCGGTTCAAGTCCGGCCCTCGGCA--- tdbD7213|Bacillus_anthracis_str._A2012|191218|Leu|CAA GCCGATGTGGCGGAATTGGCAGACGCGCACGACTCAAAATCGTGTTCC----TTCG----GGAGTGTCGGTTCGACCCCGACCATCGGTACCA tdbD7067|Bacillus_anthracis_str._Ames|198094|Leu|TAG GCGGGTGTGGCGGAATTGGCAGACGCACTAGACTTAGGATCTAGCGCC----TTT-----GGCGTGGGGGTTCGACTCCCTTCACCCGCA--- tdbD7118|Bacillus_anthracis_str._Sterne|260799|Leu|TAG GCGGGTGTGGCGGAATTGGCAGACGCACTAGACTTAGGATCTAGCGCC----TTT-----GGCGTGGGGGTTCGACTCCCTTCACCCGCA--- tdbD7172|Bacillus_cereus_ATCC_10987|222523|Leu|TAG GCGGGTGTGGCGGAATTGGCAGACGCACTAGACTTAGGATCTAGCGCC----TTT-----GGCGTGGGGGTTCGACTCCCTTCACCCGCA--- tdbD7015|Bacillus_cereus_ATCC_14579|226900|Leu|TAG GCGGGTGTGGCGGAATTGGCAGACGCACTAGACTTAGGATCTAGCGCC----TTT-----GGCGTGGGGGTTCGACTCCCTTCACCCGCA--- tdbD6959|Bacillus_halodurans_C-125|272558|Leu|TAG GCGGGTGTGGCGGAATTGGCAGACGCGCTAGACTTAGGATCTAGTGTCC---TTG----TGACGTGGGGGTTCGACTCCCTTCACCCGCA--- tdbD6450|Bacillus_subtilis_subsp._subtilis_str._168|224308|Leu|TAA GCCGGGGTGGTGGAATTGGCAGACACACAGGACTTAAAATCCTGCGGTAG--GTGA--CTACCGTGCCGGTTCAAGTCCGGCCCTCGGCA--- tdbD7217|Bacillus_thuringiensis_serovar_konkukian_str._97-27|281309|Leu|TAG GCGGGTGTGGCGGAATTGGCAGACGCACTAGACTTAGGATCTAGCGCC----TTT-----GGCGTGGGGGTTCGACTCCCTTCACCCGCA--- tdbD7059|Bacteroides_thetaiotaomicron_VPI-5482|226186|Leu|TAA GCTCGAATGGTGGAAT-GGTAGACACGAAGGACTTAAAATCCTTTGGCCA--TTG---CGGCTGTGCGGGTTCAAGTCCCGCTTCGAGTA--- tdbD7072|Bartonella_henselae_str._Houston-1|283166|Leu|TAA GCGGACGTGATGAAATCGGTAAACATAGCAGACTTAAAATCTGCCGGTC---TAA----GACCTTGCGGGTTCAAGTCCCGCCGTCCGCACCA tdbD7227|Bartonella_quintana_str._Toulouse|283165|Leu|TAA GCGGATGTGATGAAATCGGTAAACATAGCAGACTTAAAATCTGCCGGTC---TAA----GACCTTGCGGGTTCAAGTCCCGCCGTCCGCACCA tdbD7077|Bdellovibrio_bacteriovorus_HD100|264462|Leu|TAA GCCCCGGTGGCGAAATCGGTAGACGCACAGGACTTAAAATCCTGAGCTTCGTTTAAACGGGCG-TGCCGGTTCAAGTCCGGCCCGGGGCACCA tdbD6906|Bifidobacterium_longum_NCC2705|206672|Leu|TAA GCCTCCGTGGCGAAAT-GGTATACGCAGTCGACTTAAAATCGATCGC-----TTCG-----GCTTGTGGGTTCGAGTCCCACCGGAGGCA--- tdbD1544|Bordetella_pertussis|520|Leu|CAG GCCCAGGTGGCGGAATTGGTAGACGCGCATGGTTCAGGTCCATGTGCC----GCAA----GGTGTGGAGGTTCGAGTCCTCTCCTGGGCACCA tdbD6527|Borrelia_burgdorferi_B31|224326|Leu|TAA GCCGAAGTGGTGGAATTGGTAGACACACAGGACTTAAAATCCTGAGGAG---GAAG---CTCG-TACCGGTTCAAGTCCGGTCTTCGGTA--- tdbD7124|Borrelia_garinii_PBi|290434|Leu|CAA GCCGGTATGGCGGAATTGGTAGACGCGTCAGACTCAAAATCTGATGAGG---GCAA---CTTCGTGTCGGTTCGACTCCGACTACCGGTA--- tdbD6962|Bradyrhizobium_japonicum_USDA_110|224911|Leu|CAA GCCCCTGTGGCGGAACTGGTAGACGCGCTCGACTCAAAATCGAGTTCC----GCAA----GGAGTGCTGGTTCGATTCCGGCCAGGGGCACCA tdbD6623|Brucella_melitensis_16M|224914|Leu|TAA GCGGTCGTGGCGAAATTGGTATACGCAACGGACTTAAAATCCGTCGTCT---TTA----AGACTTGCGGGTTCAAGTCCCGCCGACCGCACCA tdbD6911|Brucella_suis_1330|204722|Leu|TAA GCGGTCGTGGCGAAATTGGTATACGCAACGGACTTAAAATCCGTCGTCT---TTA----AGACTTGCGGGTTCAAGTCCCGCCGACCGCACCA tdbD6455|Buchnera_aphidicola_str._APS_(Acyrthosiphon_pisum)|107806|Leu|TAA GCCCGGATGGTGAAATTGGTAGACACAAGGGACTTAAAATCCCTCGGCC---TTAT---GGCTTTGCGGGTTCAAGTCCCGCTCCGGGTA--- tdbD7020|Buchnera_aphidicola_str._Bp_(Baizongia_pistaciae)|224915|Leu|TAA GCCCGGATGGTGAAATCGGTAAACACAAGGGATTTAAAATCCCTCGGCC---TTAT---GGCTTTGCGGGTTCAAGTCCCGCTCCGGGTA--- tdbD6840|Buchnera_aphidicola_str._Sg_(Schizaphis_graminum)|198804|Leu|TAG GCGGGAGTGGCGAAATAGGTAGACGCACCAGATTTAGGTTCTGGCGCC----GTAA----GGTGTGCGAGTTCAAATCTCGCCTCCCGTA--- tdbD6531|Campylobacter_jejuni_subsp._jejuni_NCTC_11168|192222|Leu|TAA GCCCGGGTGGTGGAATTGGTAGACACAAGGGACTTAAAATCCCTCGGAAT--TTTT--CTTCCGTGCCGGTTCAAGTCCGGCCTCGGGCACCA tdbD7232|Candidatus_Blochmannia_floridanus|203907|Leu|TAA GCCCGGGTGGTGGAATTGGTAGACACAAGGGACTTAAAATCCCTCAGTT---TTA----TACTGTACGAGTTCAAGTCTCGTCCCGGGTA--- tdbD7097|Candidatus_Protochlamydia_amoebophila_UWE25|264201|Leu|TAA GCTCGGGTGGTGGAAT-GGTAGACACAAGAGACTTAAAATCTCTTGCTCA--TTT---TGGGCGTGAAGGTTCGAGTCCTTTCCCGAGCA--- tdbD6536|Caulobacter_crescentus_CB15|190650|Leu|TAA GGGGACGTGGCGGAATCGGTAGACGCGCCGGACTTAAAATCCGTTGGA----GCAA----TCCGTGTGGGTTCGAGTCCCACCGTCCCTACCA tdbD6600|Chlamydia_muridarum_Nigg|243161|Leu|CAA GCCGGCGTGGCGGAAT-GGTAGACGCGGTAGACTCAAAATCTACTCTTA---GCAG---TAAGGTGTTGGTTCGAGTCCAATCGCCGGCA--- tdbD6437|Chlamydia_trachomatis_D/UW-3/CX|272561|Leu|CAA GCCGGCGTGGCGGAAT-GGTAGACGCGGTAGACTCAAAATCTACTCTTA---GCAG---TAAGGTGTTGGTTCGAGTCCAATCGCCGGCA--- tdbD6431|Chlamydophila_pneumoniae_AR39|115711|Leu|TAG GCCCAGGTGGTGAAATTGGTAGACACGCTGGATTTAGGATCCAGTGCT----TTCG----GGCATGTAGGTTCAAGTCCTATCCTGGGCA--- tdbD6436|Chlamydophila_pneumoniae_CWL029|115713|Leu|TAG GCCCAGGTGGTGAAATTGGTAGACACGCTGGATTTAGGATCCAGTGCT----TTCG----GGCATGTAGGTTCAAGTCCTATCCTGGGCA--- tdbD6496|Chlamydophila_pneumoniae_J138|138677|Leu|TAG GCCCAGGTGGTGAAATTGGTAGACACGCTGGATTTAGGATCCAGTGCT----TTCG----GGCATGTAGGTTCAAGTCCTATCCTGGGCA--- tdbD6824|Chlorobium_tepidum_TLS|194439|Leu|TAA GCCGAAGTGGCGGAACTGGTAGACGCCCGGGACTTAAAATCCCGTGTTCA--GCAA--TGGACGTGCGGGTTCGATTCCCGCCTTCGGCA--- tdbD6616|Clostridium_acetobutylicum_ATCC_824|272562|Leu|TAA GCCGAAGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGCGATGCT-AAT--CACATCGTACCGGTTCGATTCCGGTCTTCGGCACCA tdbD6594|Clostridium_perfringens_str._13|195102|Leu|CAA GCCGAAGTGGCGGAATTGGCAGACGCAGCGGACTCAAAATCCGCCGGGCT--AAT---ACTCG-TACGGGTTCGAGTCCCGTCTTCGGCACCA tdbD6966|Clostridium_tetani_E88|212717|Leu|TAA GCCGAAGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGCGGTGTT-TTGA-AGCACCGTACCGGTTCGATTCCGGTCTTCGGCACCA tdbD7084|Corynebacterium_diphtheriae_NCTC_13129|257309|Leu|TAG GCGCCCGTGGCGGAATTGGCAGACGCGCTGGATTTAGGTTCCAGTGTC----TTAG----GACGTGAGAGTTCAAGTCTCTCCGGGCGCA--- tdbD6913|Corynebacterium_efficiens_YS-314|196164|Leu|TAA GCCCCCATAGCCCAATCGGCAGAGGCGGTTGACTTAAAATCAATTC----------------AGTGTGGGTTCGAGTCCCACTGGGGGCA--- tdbD6845|Corynebacterium_glutamicum_ATCC_13032|196627|Leu|TAA GCCCCCATAGCCCAATCGGCAGAGGCGGTTGACTTAAAATCAATAC----------------AGTGTGGGTTCGAGTCCCACTGGGGGCACCA tdbD7012|Coxiella_burnetii_RSA_493|227377|Leu|CAG GCCGAGGTGGTGGAATTGGTAGACACGCAAGTTTCAGGTACTTGTGGGGG--AAA---CCCCG-TGGAGGTTCAAGTCCTCTCCTCGGCA--- tdbD6538|Deinococcus_radiodurans_R1|243230|Leu|CAA GCCGATATGGCGGAATTGGTAGACGCACTCGACTCAAAATCGAGCGGG----AAA-----CCG-TAAGGGTTCGAGTCCCTTTATCGGCACCA tdbD7178|Desulfovibrio_vulgaris_subsp._vulgaris_str._Hildenborough|882|Leu|TAG GCGAGAGTGGCGGAATAGGTAGACGCACTGGACTTAGAATCCAGCGCC----TTTG----TGCGTGGGAGTTCGAGTCTCCCCTCTCGCACCA tdbD6971|Enterococcus_faecalis_V583|226185|Leu|TAA GCCGGGGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGCGGTGA--GTGA--TCACCGTACCGGTTCGATTCCGGTCCTCGGCA--- tdbD7027|Escherichia_coli_CFT073|199310|Leu|CAA GCCGAAGTGGCGAAATCGGTAGACGCAGTTGATTCAAAATCAACCGTA----GAAA----TACGTGCCGGTTCGAGTCCGGCCTTCGGCACCA tdbD6497|Escherichia_coli_K12|83333|Leu|CAA GCCGAAGTGGCGAAATCGGTAGACGCAGTTGATTCAAAATCAACCGTA----GAAA----TACGTGCCGGTTCGAGTCCGGCCTTCGGCACCA tdbD6503|Escherichia_coli_O157:H7|83334|Leu|CAA GCCGAAGTGGCGAAATCGGTAGACGCAGTTGATTCAAAATCAACCGTA----GAAA----TACGTGCCGGTTCGAGTCCGGCCTTCGGCACCA tdbD6508|Escherichia_coli_O157:H7_EDL933|155864|Leu|CAA GCCGAAGTGGCGAAATCGGTAGACGCAGTTGATTCAAAATCAACCGTA----GAAA----TACGTGCCGGTTCGAGTCCGGCCTTCGGCACCA tdbD6831|Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586|190304|Leu|CAA GCCTGAGTGGTGGAATTGGTAGACGCACCAGACTCAAAATCTGGAATTC---TTCG---GAATGTGCGGGTTCAAGTCCCGCCTCAGGCACCA tdbD7125|Geobacter_sulfurreducens_PCA|243231|Leu|CAG GCCGAAGTGGTGGAATTGGTAGACACGCAAGATTCAGGATCTTGTGCGG---GCAA---CCGTGTGCTGGTTCGAGTCCAGTCTTCGGCACCA tdbD6521|Haemophilus_influenzae_Rd_KW20|71421|Leu|CAA GCCTGGGTGGCGAAATTGGTAGACGCAGCGGATTCAAAATCCGCCGTTG---AAT----AAACGTGTCGGTTCGAGTCCGACCCTAGGCACCA tdbD6513|Helicobacter_pylori_26695|85962|Leu|CAA GCCGAAGTGGTGGAATTGGTAGACACGCTAGACTCAAAATCTGGTGGGA---GCAA---TCCCGTGTCGGTTCGAGTCCGACCTTCGGCACCA tdbD6517|Helicobacter_pylori_J99|85963|Leu|CAA GCCGAAGTGGTGGAATTGGTAGACACGCTAGACTCAAAATCTGGTGGGA---GCAA---TCCCGTGTCGGTTCGAGTCCGACCTTCGGCACCA tdbD7132|Lactobacillus_johnsonii_NCC_533|257314|Leu|TAA GCCGGGGTGGCGGAACTGGCAGACGCACGGGACTTAAAATCCCGCGGTTG--GTGA--CAACCGTACCGGTTCGATTCCGGTCCTCGGCA--- tdbD6976|Lactobacillus_plantarum_WCFS1|220668|Leu|TAA GCCGGGGTGGCGGAATTGGCAGACGCACAGGACTTAAAATCCTGCGGTTA--GTGA--TAACCGTACCGGTTCGATCCCGGTCCTCGGCA--- tdbD7139|Leifsonia_xyli_subsp._xyli_str._CTCB07|281090|Leu|TAA GCCCCCATAGCCCAATCGGCAGAGGCAGGCGACTTAAAATCGCTTC----------------AGTGTGGGTTCGAATCCCGCTGGGGGCA--- tdbD6919|Leptospira_interrogans_serovar_Lai_str._56601|189518|Leu|TAG GCGAGTATGGTGAAATTGGTAGACACGCCAGATTTAGGTTCTGGTGCA----GAAA----TGTGTGGGGGTTCGAGTCCCTCTACTCGCA--- tdbD6586|Listeria_innocua_Clip11262|272626|Leu|TAA GCCGGGGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGCGGATA--GTGA--TATCCGTACCGGTTCGATTCCGGTCCTCGGCA--- tdbD6590|Listeria_monocytogenes_EGD-e|169963|Leu|TAA GCCGGGGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGCGGATA--GTGA--TATCCGTACCGGTTCGATTCCGGTCCTCGGCA--- tdbD7183|Listeria_monocytogenes_str._4b_F2365|265669|Leu|TAA GCCGGGGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGCGGATA--GTGA--TATCCGTACCGGTTCGATTCCGGTCCTCGGCA--- tdbD7188|Mesoplasma_florum_L1|265311|Leu|TAA CCCCAAGTGGCGGAATCGGTAGACGCAGTGGACTTAAAATCCACCGGGCT--TTAT--CTCCCGTGCCAGTTCAAGTCTGGCCTTGGGGACCA tdbD6626|Mesorhizobium_loti_MAFF303099|266835|Leu|TAA GCGGACGTGGCGGAATTGGTAGACGCAAGGGACTTAAAATCCCTCGATC---TCT----GATCGTACGGGTTCGATTCCCGTCGTCCGCACCA tdbD7002|Mycobacterium_bovis_AF2122/97|233413|Leu|TAA GCCCCCATAGCCCAATTGGCAGAGGCAGCGGACTTAAAATCCGTCA----------------AGTGTCGGTTCGAGTCCGACTGGGGGCA--- tdbD6487|Mycobacterium_leprae_TN|272631|Leu|TAA GCCCCCATAGCCCAATTGGCAGAGGCAGCGGACTTAAAATCCGTCA----------------AGTGTCGGTTCGAGTCCGACTGGGGGCA--- tdbD6460|Mycobacterium_tuberculosis_CDC1551|83331|Leu|TAA GCCCCCATAGCCCAATTGGCAGAGGCAGCGGACTTAAAATCCGTCA----------------AGTGTCGGTTCGAGTCCGACTGGGGGCA--- tdbD7090|Mycobacterium_tuberculosis_H37Rv|83332|Leu|TAA GCCCCCATAGCCCAATTGGCAGAGGCAGCGGACTTAAAATCCGTCA----------------AGTGTCGGTTCGAGTCCGACTGGGGGCA--- tdbD1499|Mycoplasma_capricolum|2095|Leu|TAA CCCCAAGTGGCGGAATAGGTAGACGCATTGGACTTAAAATCCAACGGGCT--TAAT--ATCCTGTGCCGGTTCAAGTCCGGCCTTGGGGACCA tdbD6999|Mycoplasma_gallisepticum_R|233150|Leu|TAA GCCCAAGTGACGGAAT-GGTAGACGTACAGGACTTAAAATCCTGGGGTA---GCGA---TACCGTGCCGGTTCAAGTCCGGCTTTGGGCACCA tdbD6545|Mycoplasma_genitalium_G37|243273|Leu|TAA GCCCAAGTGGCGGAAT-GGTAGACGCATGGGATTTAAGATCCCACGCCA---GTAA---TGGTGTGCCGGTTCAAGTCCGGCTTTGGGCACCA tdbD6550|Mycoplasma_pneumoniae_M129|272634|Leu|TAG GCACTCGTGGCGGAAT-GGTAGACGCGCTAGACTTAGGATCTAGTTTCA---TTG----TGGAGTGGGGGTTCAAGTCCCTTCGAGTGCACCA tdbD6655|Mycoplasma_pulmonis_UAB_CTIP|272635|Leu|CAA GCCCGAGTGGTGAAAT-GGCAGACACAGTTGACTCAAAATCAACCGCT----TCAC----GGCGTGCTGGTTCAAGTCCAGTCTCGGGCACCA tdbD1506|Mycoplasma_sp._PG50|2126|Leu|TAG GGGGGATTGGCGGAATTGGCAGACGCACTAGACTTAGGATCTAGCGTC----TTT-----GACGTAAGGGTTCAAGTCCCTTATCCCCCACCA tdbD6465|Neisseria_meningitidis_MC58|122586|Leu|TAA GCCCGGGTGGTGAAATAGGTAGACACAACGGACTTAAAATCCGTCGGGACT-AAA--CATCCCGTGCCGGTTCGATTCCGGCTCCGGGCACCA tdbD6470|Neisseria_meningitidis_Z2491|122587|Leu|TAA GCCCGGGTGGTGAAATAGGTAGACACAACGGACTTAAAATCCGTCGGGACT-AAA--CATCCCGTGCCGGTTCGATTCCGGCTCCGGGCACCA tdbD7053|Nitrosomonas_europaea_ATCC_19718|228410|Leu|CAA GCCGGGATGGCGGAATTGGTAGACGCACGGGACTCAAAATCCCGCGATG---GTGA---CATCATGGGGGTTCGATTCCCCCTCCCGGCACCA tdbD6654|Nostoc_sp._PCC_7120|103690|Leu|TAA GGGGGTGTGGCGGAAT-GGTAGACGCTACGGACTTAAAATCCGTTGACCT--TAAA--CGGTCGTGTGGGTTCAAGTCCCTCCACCCCCA--- tdbD6926|Oceanobacillus_iheyensis_HTE831|221109|Leu|CAA GCCGGTGTGGCGGAATTGGCAGACGCGCACGACTCAAAATCGTGTTCC----TTCT----GGAGTGTCGGTTCGACCCCGACCACCGGTA--- tdbD7086|Onion_yellows_phytoplasma_OY-M|262768|Leu|CAA GCTGATGTGGCGGAAT-GGTAGACGCACTTGACTCAAAATCAAGCGAGC---AAT----ACTCATGTCGGTTCGAGTCCGACCATCAGTACCA tdbD6552|Pasteurella_multocida_subsp._multocida_str._Pm70|272843|Leu|TAA GCCCGAGTGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGCTT---TTCG---AAGCGTGCCAGTTCAAGTCTGGCCTCGGGCACCA tdbD1540|Photobacterium_leiognathi|658|Leu|TAG GCGGAAGTGGCGGAATTGGTAGACGCACTAGATTTAGGTTCATGCGCCT---GTA----AGGTGTGAGAGTTCAAGTCTCTCCTTCCGCACCA tdbD7100|Photorhabdus_luminescens_subsp._laumondii_TTO1|243265|Leu|TAA GCCCAGGTGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCT---GTAA---GGCTGTGCGGGTTCAAGTCCCGCCCTGGGCACCA tdbD7140|Porphyromonas_gingivalis_W83|242619|Leu|TAA GCCCGGATGGTGGAAT-GGTAGACACGAAGGACTTAAAATCCTTTGGCCA--TTAT--CGGCTGTGCGGGTTCAAGTCCCGCTCCGGGTA--- tdbD7190|Propionibacterium_acnes_KPA171202|267747|Leu|CAA GCCCGAGTGGCGGAAT-GGTAGACGCGGCGCACTCAAAATGCGCTGTCC---TTGC---GGGCGTAGGGGTTCGACTCCCCTCTCGGGCA--- tdbD6559|Pseudomonas_aeruginosa_PAO1|208964|Leu|CAA GCCTCGGTGGCGGAATCGGTAGACGCGGCGGATTCAAAATCCGTTTCTG---GCGA---CAGAGTGAGAGTTCGAGTCTCTCCCGAGGCACCA tdbD7060|Pseudomonas_syringae_pv._tomato_str._DC3000|223283|Leu|CAA GCCCTGATGGCGGAATTGGTAGACGCGGCGGATTCAAAATCCGTTTTC----GAAA----GAAGTGGGAGTTCGATTCTCCCTCGGGGCACCA tdbD6642|Ralstonia_solanacearum_GMI1000|267608|Leu|CAG GCCCAGGTGGCGGAATTGGTAGACGCACTAGTTTCAGGTACTAGCGGG----TAAC----TCCGTGGAGGTTCGAGTCCTCTCCTGGGCACCA tdbD7040|Rhodopirellula_baltica_SH_1|243090|Leu|TAG GCTGAGGTAGGCCAAC-GGC-GAGCCGCTTGTCTTAGGAACAAGTG----------------CTTGCGGGTTCGACTCCCGCCCTCAGTA--- tdbD7107|Rhodopseudomonas_palustris_CGA009|258594|Leu|CAA GCCCCTGTGGCGGAACTGGTAGACGCGCTCGACTCAAAATCGAGTTCC----GCAA----GGAGTGCTGGTTCGATCCCGGCCAGGGGCACCA tdbD6618|Rickettsia_conorii_str._Malish_7|272944|Leu|TAA GCCCGCGTGATGGAAT-GGTAGACATAACGGACTTAAAATCCGTGGAGC---GTAA---GCTCTTGCCGGTTCAAGTCCGGCCGCGGGTACCA tdbD6842|Rickettsia_prowazekii_str._Madrid_E|272947|Leu|TAA GCCCGCGTGATGGAAT-GGTAGACATAACGGACTTAAAATCCGTGGAGC---GTAA---GCTCTTGCCGGTTCAAGTCCGGCCGCGGGTACCA tdbD7146|Rickettsia_typhi_str._Wilmington|257363|Leu|TAA GCCCGCGTGATGGAAT-GGTAGACATAACGGACTTAAAATCCGTGGAGT---GTAA---ACTCTTGCCGGTTCAAGTCCGGCCGTGGGTACCA tdbD6667|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|220341|Leu|CAA GCCGAAGTGGCGAAATCGGTAGACGCAGTTGATTCAAAATCAACCGTA----GAAA----TACGTGCCGGTTCGAGTCCGGCCTTCGGCACCA tdbD7038|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|209261|Leu|CAA GCCGAAGTGGCGAAATCGGTAGACGCAGTTGATTCAAAATCAACCGTA----GAAA----TACGTGCCGGTTCGAGTCCGGCCTTCGGCACCA tdbD6638|Salmonella_typhimurium_LT2|99287|Leu|TAA GCCCGGATGGTGGAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCG---TTCG---CGCTGTGCGGGTTCAAGTCCCGCTCCGGGTACCA tdbD6936|Shewanella_oneidensis_MR-1|211586|Leu|TAA GCCCGAGTGGTGGAATCGGTAGACACAAGGGATTTAAAATCCCTCGCTG---GTAA---CAGCGTGCCAGTTCAAGTCTGGCCTCGGGTACCA tdbD6940|Shigella_flexneri_2a_str._301|198214|Leu|CAA GCCGAAGTGGCGAAATCGGTAGACGCAGTTGATTCAAAATCAACCGTA----GAAA----TACGTGCCGGTTCGAGTCCGGCCTTCGGCACCA tdbD6672|Sinorhizobium_meliloti_1021|266834|Leu|TAA GCGGACGTGGCGAAACTGGTAGACGCAAGGGACTTAAAATCCCTCGGG----AAA-----CCG-TACGGGTTCGATTCCCGTCGTCCGCACCA tdbD7114|Staphylococcus_aureus_subsp._aureus_MRSA252|282458|Leu|TAG GCGGGTGTGGCGGAATTGGCAGACGCACTAGACTTAGGATCTAGCGCC----TTAC----GGCGTGGGGGTTCGACTCCCTTCACCCGCA--- tdbD6853|Staphylococcus_aureus_subsp._aureus_MW2|196620|Leu|TAG GCGGGTGTGGCGGAATTGGCAGACGCACTAGACTTAGGATCTAGCGCC----TTAC----GGCGTGGGGGTTCGACTCCCTTCACCCGCA--- tdbD6483|Staphylococcus_aureus_subsp._aureus_N315|158879|Leu|TAG GCGGGTGTGGCGGAATTGGCAGACGCACTAGACTTAGGATCTAGCGCC----TTAC----GGCGTGGGGGTTCGACTCCCTTCACCCGCA--- tdbD6979|Staphylococcus_epidermidis_ATCC_12228|176280|Leu|CAA GCCGGTGTGGCGGAATTGGCAGACGCGCGGGACTCAAAATCCCGTTCCT---TTAT---TGGAGTGTCGGTTCGATCCCGACCACCGGTA--- tdbD6946|Streptococcus_agalactiae_2603V/R|208435|Leu|TAA GCCGGGGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGCGATGG--TAA---ACATCGTACCGGTTCGATTCCGGTCCTCGGCA--- tdbD6856|Streptococcus_agalactiae_NEM316|211110|Leu|TAA GCCGGGGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGCGATGG--TAA---ACATCGTACCGGTTCGATTCCGGTCCTCGGCA--- tdbD6953|Streptococcus_mutans_UA159|210007|Leu|TAA GCCGGGGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGCGAAGG--GGAA--CTTTCGTACCGGTTCGATTCCGGTCCTCGGCA--- tdbD6609|Streptococcus_pneumoniae_TIGR4|170187|Leu|TAA GCCGGGGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGCGATTG--GTAA--CGATCGTACCGGTTCGATTCCGGTCCTCGGCA--- tdbD6605|Streptococcus_pyogenes_M1_GAS|160490|Leu|TAA GCCGGGGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGCGATGG--TTT---ACATCGTACCGGTTCGATTCCGGTCCTCGGCA--- tdbD6859|Streptococcus_pyogenes_MGAS315|198466|Leu|TAA GCCGGGGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGCGATGG--TTT---ACATCGTACCGGTTCGATTCCGGTCCTCGGCA--- tdbD7007|Streptococcus_pyogenes_SSI-1|193567|Leu|TAA GCCGGGGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGCGATGG--TTT---ACATCGTACCGGTTCGATTCCGGTCCTCGGCA--- tdbD7033|Streptomyces_avermitilis_MA-4680|227882|Leu|CAA GCCCCGGTAGTCCAGC-GGTAGAGACACGGTGCTCAAACCACCGAC----------------AGCGTCGGTTCGAATCCGACTCGGGGCA--- tdbD6931|Streptomyces_coelicolor_A3(2)|100226|Leu|CAA GCCTCGGTAGTCCAGC-GGTAGAGACACGGTGCTCAAACCACCGAC----------------AGCGTGGGTTCGAATCCCACCCGGGGCA--- tdbD7153|Symbiobacterium_thermophilum_IAM_14863|292459|Leu|TAA GCCCGAGTGGCGGAAT-GGCAGACGCACGAGACTTAAAATCTTGGGGCCG--CAG---AGGCCGTGCGGGTTCGAGTCCCGCCTCGGGCACCA tdbD6568|Synechocystis_sp._PCC_6803|1148|Leu|TAA GGGGGTGTGGCGGAAT-GGTAGACGCTGCGGATTTAAAATCCGTTGAGCCT-TAT--AAGCTCGTGAGAGTTCGAGTCTCTCCACCCCCA--- tdbD6876|Thermoanaerobacter_tengcongensis_MB4|273068|Leu|TAA GCCGGAGTGGCGGAACTGGCAGACGCACAGGACTTAAAATCCTGGGGGCTG-AAT--AAGCCCGTACCGGTTCAAGTCCGGTCTCCGGCACCA tdbD6863|Thermosynechococcus_elongatus_BP-1|197221|Leu|CAA GGGCGAGTGGCGAAAT-GGTAGACGCACTACACTCAAAATGTAGCGGGG---TTT----CCCCATGTCAGTTCGAGTCTGACCTCGCCCA--- tdbD6574|Thermotoga_maritima_MSB8|243274|Leu|TAG GCGAGAGTGGCGGAACTGGCAGACGCGCTGGACTTAGAATCCAGTGGGC---TGAA---GCCCGTGTGGGTTCAAGTCCCACCTCTCGCACCA tdbD7195|Thermus_thermophilus_HB27|262724|Leu|TAG GCGAGGATGGCGGAATCGGTAGACGCGCCGGACTTAGGATCCGGTGGGG---CAA----CCCG-TGCGGGTTCAAGTCCCGCTCCTCGCACCA tdbD7202|Treponema_denticola_ATCC_35405|243275|Leu|TAA GCTGAAGTGGTGGAATAGGTAGACACTAGGGACTTAAAATCCCTTGGCA---GTAA---TGCCGTACGGGTTCAATTCCCGTCTTCAGCA--- tdbD6558|Treponema_pallidum_subsp._pallidum_str._Nichols|243276|Leu|TAG GCGAGAGTGGTGGAATCGGCAGACACGCTAGACTTAGGATCTAGTGCC----TCT-----GGCATGAGGGTTCAAGTCCCTCCTCTCGCA--- tdbD6987|Tropheryma_whipplei_str._Twist|203267|Leu|TAA GCCCTCGTAGCCCAATCGGCAGAGGCAGACGACTTAAAATCGTCCC----------------AGTGTGGGTTCGAGTCCCACCGAGGGCA--- tdbD6992|Tropheryma_whipplei_TW08/27|218496|Leu|TAA GCCCTCGTAGCCCAATCGGCAGAGGCAGACGACTTAAAATCGTCCC----------------AGTGTGGGTTCGAGTCCCACCGAGGGCA--- tdbD6490|Ureaplasma_parvum_serovar_3|38504|Leu|TAA GCTGGAGTGGCGGAAT-GGTAGACGCACTGGACTTAAAATCCAGTGACT---TCAC---GGTCGTGAGGGTTCAAGTCCCTCTTCCAGCACCA tdbD6472|Vibrio_cholerae_O1_biovar_El_Tor_str._N16961|243277|Leu|CAA GCCGATGTGGTGAAATTGGTAGACACGACGGATTCAAAATCCGTTTCC----TTCG----GGAGTGACGGTTCAAGTCCGTCCATCGGTACCA tdbD7206|Wolbachia_endosymbiont_of_Drosophila_melanogaster|163164|Leu|CAA GCCCCTGTGGTGGAAT-GGTAGACACGGCAGACTCAAAATCTGTTGCTT---GCAA---AAGCATGCTGGTTCAAGTCCGGCCAGGGGCA--- tdbD6886|Xanthomonas_axonopodis_pv._citri_str._306|190486|Leu|CAA GCCGAAGTGGCGGAATCGGTAGACGCAGCGGACTCAAAATCCGCCGCCCT--TAA---AAGCG-TGTGGGTTCGAGTCCCACCTTCGGCACCA tdbD6880|Xanthomonas_campestris_pv._campestris_str._ATCC_33913|190485|Leu|TAA GCCCGGGTGGCGAAATTGGTAGACGCAAGGGACTTAAAATCCCTCAGCC---GCAA---GGCTATGCGGGTTCGACCCCCGCCCCGGGCA--- tdbD6575|Xylella_fastidiosa_9a5c|160492|Leu|CAA GCCGAAGTGGCGGAATTGGTAGACGCAGCGGACTCAAAATCCGCCACCCT--TAA---AAGTG-TGTGGGTTCGAGTCCCACCTTCGGCACCA tdbD6994|Xylella_fastidiosa_Temecula1|183190|Leu|CAA GCCGAAGTGGCGGAATTGGTAGACGCAGCGGACTCAAAATCCGCCACCCT--TAA---AAGTG-TGTGGGTTCGAGTCCCACCTTCGGCACCA tdbD7157|Yersinia_pestis_biovar_Microtus_str._91001|229193|Leu|TAA GCCCGGGTGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCT---TAT----GGCTGTGCGGGTTCAAGTCCCGCCCCGGGCACCA tdbD6632|Yersinia_pestis_CO92|214092|Leu|TAA GCCCGGGTGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCT---TAT----GGCTGTGCGGGTTCAAGTCCCGCCCCGGGCACCA tdbD6898|Yersinia_pestis_KIM|187410|Leu|TAA GCCCGGGTGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCT---TAT----GGCTGTGCGGGTTCAAGTCCCGCCCCGGGCACCA tdbD7165|Yersinia_pseudotuberculosis_IP_32953|273123|Leu|TAA GCCCGGGTGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCT---TAT----GGCTGTGCGGGTTCAAGTCCCGCCCCGGGCACCA #=GC SS_cons (((((((..((((.........)))).(((((.......))))).....................(((((.......)))))))))))).... #=GC SN 0000000..1111.........1111.22222.......22222.....................33333.......333330000000.... #=GF CS 93 columns, 21 paired, 19 covariant; 4 stems //