# STOCKHOLM 1.0          BACTERIAL Phe
#=GC CS                                                                             2235663....................54434.......43445.....4642.........24643665322....
#=GC BP                                                                             +++++++..++++.........++++.+++++.......+++++.....+++++.......++++++++++++....
tdbD676|Acholeplasma_laidlawii|2148|Phe|GAA                                         GGCTCTGTAGCTCAGTCGGT-AGAGCAGTGGCCTGAAGAGCCTCGTCGTAG-GGTTCGATTCCGCTTGGAGCCACCA
tdbD5105|Acinetobacter_sp._ADP1|62977|Phe|GAA                                       GGCGCGATAGCTCAGTCGGT-AGAGCAACGGATTGAAAATCCGTGTGTCGGCAGTTCGATCCTGCCTCACGCCACCA
tdbD4974|Agrobacterium_tumefaciens_str._C58|176299|Phe|GAA                          GCCCGGATAGCTCAGTTGGT-AGAGCAGCGGATTGAAAATCCGCGTGTCGGTGGTTCAAATCCGCCTCCGGGCACCA
tdbD4956|Aquifex_aeolicus_VF5|224324|Phe|GAA                                        GGCCCGGTAGCTCAGGTGGT-AGAGCACCCGGCTGAAAACCGGGGTGTCGGCGGTTCGACTCCGCCCTGGGCCACCA
tdbD5107|Bacillus_anthracis_str._A2012|191218|Phe|GAA                               GGCTCGGTAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCGGCGGTTCGATTCCGTCCCGAGCCACCA
tdbD5069|Bacillus_anthracis_str._Ames|198094|Phe|GAA                                GGCTCGGTAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCGGCGGTTCGATTCCGTCCCGAGCCA---
tdbD5081|Bacillus_anthracis_str._Sterne|260799|Phe|GAA                              GGCTCGGTAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCGGCGGTTCGATTCCGTCCCGAGCCA---
tdbD5097|Bacillus_cereus_ATCC_10987|222523|Phe|GAA                                  GGCTCGGTAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCGGCGGTTCGATTCCGTCCCGAGCCA---
tdbD5058|Bacillus_cereus_ATCC_14579|226900|Phe|GAA                                  GGCTCGGTAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCGGCGGTTCGATTCCGTCCCGAGCCA---
tdbD5041|Bacillus_halodurans_C-125|272558|Phe|GAA                                   GGCTCGGTAGCTCAGTCGGT-AGAGCAATGGACTGAAAATCCATGTGTCGGCGGTTCGATTCCGTCCCGAGCCACCA
tdbD4921|Bacillus_subtilis_subsp._subtilis_str._168|224308|Phe|GAA                  GGCTCGGTAGCTCAGTTGGT-AGAGCAACGGACTGAAAATCCGTGTGTCGGCGGTTCGATTCCGTCCCGAGCCA---
tdbD5109|Bacillus_thuringiensis_serovar_konkukian_str._97-27|281309|Phe|GAA         GGCTCGGTAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCGGCGGTTCGATTCCGTCCCGAGCCA---
tdbD5065|Bacteroides_thetaiotaomicron_VPI-5482|226186|Phe|GAA                       GGTGCCATAGCTCAGTTGGT-AGAGCAAAGGACTGAAAATCCTTGTGTCCCCGGTTCGATTCCTGGTGGCACCA---
tdbD5070|Bartonella_henselae_str._Houston-1|283166|Phe|GAA                          GCCCAGATAGCTCAGTTGGT-AGAGCAGCGGACTGAAAATCCGCGTGTCCGTGGTTCGAATCCGCGTCTGGGCACCA
tdbD5112|Bartonella_quintana_str._Toulouse|283165|Phe|GAA                           GCCCAGATAGCTCAGTTGGT-AGAGCAGCGGACTGAAAATCCGCGTGTCCGTGGTTCGAATCCGCGTCTGGGCACCA
tdbD5071|Bdellovibrio_bacteriovorus_HD100|264462|Phe|GAA                            GGCTTGGTAGCTCAGTTGGT-AGAGCAGAGGACTGAAAATCCTTGTGTCGGCGGTTCAATTCCGTCTCAAGCCACCA
tdbD5032|Bifidobacterium_longum_NCC2705|206672|Phe|GAA                              GGCTCTGTAGCTCAGTTGGT-AGAGCGAGCGACTGAAAATCGCTAGGTCAACGGATCGACGCCGTTCGGAGCCACCA
tdbD4943|Borrelia_burgdorferi_B31|224326|Phe|GAA                                    GCTGCTGTAGCTCAGTTGGT-AGAGCATAGGACTGAAAATCCTTGTGTCAGGAGTTCGATTCTCCTCGGCAGCA---
tdbD5082|Borrelia_garinii_PBi|290434|Phe|GAA                                        GCTGCTGTAGCTCAGTTGGT-AGAGCATAGGACTGAAAATCCTTGTGTCAGGAGTTCGATTCTCCTCGGCAGCA---
tdbD5042|Bradyrhizobium_japonicum_USDA_110|224911|Phe|GAA                           GCCCAGGTAGCTCAGTTGGT-AGAGCATGCGACTGAAAATCGCAGTGTCGGTGGTTCGATTCCGCCCCTGGGCACCA
tdbD4965|Brucella_melitensis_16M|224914|Phe|GAA                                     GCCCGGATAGCTCAGTTGGT-AGAGCAGCGGATTGAAAATCCGCGTGTCGGTGGTTCGAATCCGCCTCCGGGCACCA
tdbD4924|Buchnera_aphidicola_str._APS_(Acyrthosiphon_pisum)|107806|Phe|GAA          GCCCGGATAGCTCAGTTGGT-AGAGCAGGGGACTGAAAATCCCCGTGTCGGTGGTTCAATTCCGCCTCCGGGCA---
tdbD5059|Buchnera_aphidicola_str._Bp_(Baizongia_pistaciae)|224915|Phe|GAA           GCCTGAATAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTTCAGGCA---
tdbD5017|Buchnera_aphidicola_str._Sg_(Schizaphis_graminum)|198804|Phe|GAA           GCCCGGATAGCTCAGTCGGT-AGAGCAGGGGACTGAAAATCCCCGTGTCGGTGGTTCAATTCCGCCTCCGGGCA---
tdbD4944|Campylobacter_jejuni_subsp._jejuni_NCTC_11168|192222|Phe|GAA               GGTTGGATAGCTCAGTCGGT-AGAGCAGCAGACTGAAAATCTGCGTGTCGGCAGTTCGATTCTGCCTCTAACCACCA
tdbD5113|Candidatus_Blochmannia_floridanus|203907|Phe|GAA                           GCCCAGATAGCTCAGTTGGT-AGAGCAGAGGACTGAAGATCCTCGTGTCCTTGGTTCGATTCCGAGTCTGGGCACCA
tdbD5075|Candidatus_Protochlamydia_amoebophila_UWE25|264201|Phe|GAA                 GGCCAGATAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTTGTGTCGCTGGTTCGATTCCAGTTCTGGCCA---
tdbD4945|Caulobacter_crescentus_CB15|190650|Phe|GAA                                 GCCTGGGTAGCTCAGTTGGT-AGAGCAGCGGATTGAAAATCCGCGTGTCGCTGGTTCGATTCCGGCCCCAGGCACCA
tdbD4960|Chlamydia_muridarum_Nigg|243161|Phe|GAA                                    GGCTAGATAGCTCAGCTGGT-AGAGCAGAGGACTGAAGATCCTTGTGTCGTCGGTTCGATCCCGGCTCTGGCCA---
tdbD4919|Chlamydia_trachomatis_D/UW-3/CX|272561|Phe|GAA                             GGCTAGATAGCTCAGCTGGT-AGAGCAGAGGACTGAAGATCCTTGTGTCGTCGGTTCGATCCCGGCTCTGGCCA---
tdbD4917|Chlamydophila_pneumoniae_AR39|115711|Phe|GAA                               GGCTAGATAGCTCAGATGGT-AGAGCAGAGGATTGAAGATCCTTGTGTCGTCGGTTCGATCCCGGCTCTGGCCA---
tdbD4918|Chlamydophila_pneumoniae_CWL029|115713|Phe|GAA                             GGCTAGATAGCTCAGATGGT-AGAGCAGAGGATTGAAGATCCTTGTGTCGTCGGTTCGATCCCGGCTCTGGCCA---
tdbD4933|Chlamydophila_pneumoniae_J138|138677|Phe|GAA                               GGCTAGATAGCTCAGATGGT-AGAGCAGAGGATTGAAGATCCTTGTGTCGTCGGTTCGATCCCGGCTCTGGCCA---
tdbD5014|Chlorobium_tepidum_TLS|194439|Phe|GAA                                      GGACAGATAGCTCAGTTGGT-AGAGCAAAGGACTGAAAATCCTTGTGTCGGGGGTTCGATTCCCTCTCTGTCCACCA
tdbD4963|Clostridium_acetobutylicum_ATCC_824|272562|Phe|GAA                         GGCCAGATAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCCCTGGTTCGATTCCTGGTCTGGCCACCA
tdbD4959|Clostridium_perfringens_str._13|195102|Phe|GAA                             GGCTCGATAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCGCTGGTTCGATTCCTGCTCGAGCCACCA
tdbD5044|Clostridium_tetani_E88|212717|Phe|GAA                                      GGCTCGATAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCCCTGGTTCGATTCCTGGTCGAGCCACCA
tdbD5072|Corynebacterium_diphtheriae_NCTC_13129|257309|Phe|GAA                      GGCCAGATAGCTCAGTCGGT-AGAGCACACGCCTGAAAAGTGTGGGGTCGCCAGTTCGATCCTGGCTCTGGCCA---
tdbD5033|Corynebacterium_efficiens_YS-314|196164|Phe|GAA                            GGCCAGATAGCTCAGTCGGT-AGAGCGTTCGCCTGAAAAGTGAAAGGTCGCCGGTTCGATCCCGGCTCTGGCCA---
tdbD5019|Corynebacterium_glutamicum_ATCC_13032|196627|Phe|GAA                       -GCCAGATAGCTCAGTCGGT-AGAGCGTTCGCCTGAAAAGTGAAAGGTCGCCGGTTCGATCCCGGCTCTGGCCACCA
tdbD5056|Coxiella_burnetii_RSA_493|227377|Phe|GAA                                   GGCCAGATAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCGGCAGTTCGATTCTGCCTCTGGCCACCA
tdbD4946|Deinococcus_radiodurans_R1|243230|Phe|GAA                                  GGCTAGGTAGCTCAGCTGGT-AGAGCAAACGACTGAAAATCGTTGGGTCGCCGGTTCAAGTCCGGCCCTGGCCACCA
tdbD5098|Desulfovibrio_vulgaris_subsp._vulgaris_str._Hildenborough|882|Phe|GAA      GCCGAGGTAGCTCAGTTGGT-AGAGCAGGGGACTGAAAATCCCCGTGTCGGGAGTTCAATTCTCTCCCTCGGCACCA
tdbD5046|Enterococcus_faecalis_V583|226185|Phe|GAA                                  GGCGTGGTAGCTCAGTTGGT-AGAGCAACGGATTGAAGCTCCGTGTGTCGGCAGTTCGACTCTGTCTCACGCCA---
tdbD5060|Escherichia_coli_CFT073|199310|Phe|GAA                                     GCCCGGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA
tdbD4934|Escherichia_coli_K12|83333|Phe|GAA                                         GCCCGGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA
tdbD4936|Escherichia_coli_O157:H7|83334|Phe|GAA                                     GCCCGGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA
tdbD4938|Escherichia_coli_O157:H7_EDL933|155864|Phe|GAA                             GCCCGGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA
tdbD5015|Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586|190304|Phe|GAA         GCCCAGATAGCTCAGTCGGT-AGAGCAGGGGACTGAAAATCCCCGTGTCGGTGGTTCGATTCCGCCTCTGGGCACCA
tdbD5084|Geobacter_sulfurreducens_PCA|243231|Phe|GAA                                GCCCAGATAGCTCAGCTGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCGGCGGTTCGATTCCGTCTCTGGGCACCA
tdbD4941|Haemophilus_influenzae_Rd_KW20|71421|Phe|GAA                               GCCTCGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCA
tdbD4939|Helicobacter_pylori_26695|85962|Phe|GAA                                    GGCTTGATAGCTCAGTCGGT-AGAGCAGAAGACTGAAAATCTTCGTGTCGGTGGTTCGATTCCGCCTCAAGCCACCA
tdbD4940|Helicobacter_pylori_J99|85963|Phe|GAA                                      GGCTTGATAGCTCAGTCGGT-AGAGCAGAAGACTGAAAATCTTCGTGTCGGTGGTTCGATTCCGCCTCAAGCCACCA
tdbD5086|Lactobacillus_johnsonii_NCC_533|257314|Phe|GAA                             GGCTCGATAGCTCAGTTGGT-AGAGCAAAGGATTGAAGCTCCTTGTGTCGGCGGTTCGATTCCGTCTCGCGCCA---
tdbD5047|Lactobacillus_plantarum_WCFS1|220668|Phe|GAA                               GGCTCGGTAGCTCAGTCGGT-AGAGCAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCCCGCGCCA---
tdbD683|Lactococcus_lactis|1358|Phe|GAA                                             GGCTCGGTAGCTCAGTTGGT-AGAGCAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCTCGCGCCA---
tdbD5087|Leifsonia_xyli_subsp._xyli_str._CTCB07|281090|Phe|GAA                      GGCTCTGTAGCTCAGTTGGT-AGAGCGTTCGACTGAAAATCGAAAGGTCACCGGATCGATGCCGGTCGGAGCCA---
tdbD5034|Leptospira_interrogans_serovar_Lai_str._56601|189518|Phe|GAA               GGCCTTGTAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTTGTGTCGGGAGTTCGATTCTCTCCGAGGCCA---
tdbD4957|Listeria_innocua_Clip11262|272626|Phe|GAA                                  GGCTTGGTAGCTCAGTTGGT-AGAGCACTTGATTGAAGCTCAAGGTGTCGGCAGTTCGATTCTGTCCCAAGCCA---
tdbD4958|Listeria_monocytogenes_EGD-e|169963|Phe|GAA                                GGCTTGGTAGCTCAGTTGGT-AGAGCACTTGATTGAAGCTCAAGGTGTCGGCAGTTCGATTCTGTCCCAAGCCA---
tdbD5099|Listeria_monocytogenes_str._4b_F2365|265669|Phe|GAA                        GGCTTGGTAGCTCAGTTGGT-AGAGCACTTGATTGAAGCTCAAGGTGTCGGCAGTTCGATTCTGTCCCAAGCCA---
tdbD5100|Mesoplasma_florum_L1|265311|Phe|GAA                                        GGTTGTGTAGCTCAGTTGGT-AGAGCAGCAGATTGAAGCTCTGCGTGTCGGCGGTTCAATTCCGTCCACAACCACCA
tdbD4966|Mesorhizobium_loti_MAFF303099|266835|Phe|GAA                               GCCCAGATAGCTCAGTTGGT-AGAGCAGCGGACTGAAAATCCGCGTGTCGGTGGTTCGAATCCGCCTCTGGGCACCA
tdbD5054|Mycobacterium_bovis_AF2122/97|233413|Phe|GAA                               GGCCAGGTAGCTCAGTCGGTATGAGCGTCCGCCTGAAAAGCGGAAGGTCGGCGGTTCGATCCCGCCCCTGGCCACCA
tdbD4931|Mycobacterium_leprae_TN|272631|Phe|GAA                                     GGCCAGGTAGCTCAGTCGGTATGAGCGTCCGCCTGAAAAGCGGAAGGTCGGCGGTTCGATCCCGCCCCTGGCTA---
tdbD4925|Mycobacterium_tuberculosis_CDC1551|83331|Phe|GAA                           GGCCAGGTAGCTCAGTCGGTATGAGCGTCCGCCTGAAAAGCGGAAGGTCGGCGGTTCGATCCCGCCCCTGGCCACCA
tdbD5074|Mycobacterium_tuberculosis_H37Rv|83332|Phe|GAA                             GGCCAGGTAGCTCAGTCGGTATGAGCGTCCGCCTGAAAAGCGGAAGGTCGGCGGTTCGATCCCGCCCCTGGCCACCA
tdbD673|Mycoplasma_capricolum|2095|Phe|GAA                                          GGTCGTGTAGCTCAGTCGGT-AGAGCAGCAGACTGAAGCTCTGCGTGTCGGCGGTTCAATTCCGTCCACGACCACCA
tdbD5053|Mycoplasma_gallisepticum_R|233150|Phe|GAA                                  GGTCTTGTAGCTCAGTCGGT-AGAGCAATGGTCTGAAGAACCATGTGTCGGCAGTTCGATTCTGCCCGAGACCACCA
tdbD4947|Mycoplasma_genitalium_G37|243273|Phe|GAA                                   GGTCTTGTAGCTCAGTCGGT-AGAGCAACGGTCTGAAGAACCGTGTGTCGGCAGTTCGATTCTGCCCGAGACCACCA
tdbD675|Mycoplasma_mycoides|2102|Phe|GAA                                            GGTCGTGTAGCTCAGTCGGT-AGAGCAGCAGACTGAAGCTCTGCGTGTCGGCGGTTCAATTCCGTCCACGACCACCA
tdbD4948|Mycoplasma_pneumoniae_M129|272634|Phe|GAA                                  GGTCTTGTAGCTCAGTCGGT-AGAGCAACGGTCTGAAGAACCGTGTGTCGGCAGTTCGATTCTGCCCGAGACCACCA
tdbD4973|Mycoplasma_pulmonis_UAB_CTIP|272635|Phe|GAA                                GGCTCTGTAGCTCAGTAGGT-AGAGCAACGGATTGAAGCTCCGTGTGTCGCTGGTTCGATTCCTGCCGGAGCCACCA
tdbD4926|Neisseria_meningitidis_MC58|122586|Phe|GAA                                 GGCCAGATAGCTCAGTTGGT-AGAGCAACGGATTGAAAATCCGTGTGTCGGCGGTTCGATTCCGCCTCTGGCCACCA
tdbD4927|Neisseria_meningitidis_Z2491|122587|Phe|GAA                                GGCCAGATAGCTCAGTTGGT-AGAGCAACGGATTGAAAATCCGTGTGTCGGCGGTTCGATTCCGCCTCTGGCCACCA
tdbD5064|Nitrosomonas_europaea_ATCC_19718|228410|Phe|GAA                            GGCCAAGTAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTTGTGTCGGTGGTTCGATTCCGCCCTTGGCCACCA
tdbD4972|Nostoc_sp._PCC_7120|103690|Phe|GAA                                         GCCGGGATAGCTCAGTTGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCACGAGTTCAAGTCTCGTTCCTGGCA---
tdbD5035|Oceanobacillus_iheyensis_HTE831|221109|Phe|GAA                             GGCTTGGTAGCTCAGTCGGT-AGAGCAGAGGACTGAAAATCCTTGTGTCGGCGGTTCGATTCCGTCCCGAGCCA---
tdbD5073|Onion_yellows_phytoplasma_OY-M|262768|Phe|GAA                              GGCTCTGTAGCTCAGTCGGT-AGAGCAGTGGCCTGAAGAGCCTCGTGTCGACAGTTCGATTCTGTCCGGAGCCACCA
tdbD4949|Pasteurella_multocida_subsp._multocida_str._Pm70|272843|Phe|GAA            GCCTCGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCA
tdbD5076|Photorhabdus_luminescens_subsp._laumondii_TTO1|243265|Phe|GAA              GCCCGGATAGCTCAGTCGGT-AGAGCAGAGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTCCGGGCACCA
tdbD5088|Porphyromonas_gingivalis_W83|242619|Phe|GAA                                GGTGCCATAGCTCAGTTGGT-AGAGCAAAGGACTGAAAATCCTTGTGTCCCCGGTTCGATTCCTGGTGGCACCA---
tdbD5101|Propionibacterium_acnes_KPA171202|267747|Phe|GAA                           GGCCGGGTAGCTCAGTTGGTAGTAGCGTTCGCCTGAAAAGTGAAAGGTCACCGGTTCGACCCCGGTCCCGGCCA---
tdbD4951|Pseudomonas_aeruginosa_PAO1|208964|Phe|GAA                                 GCCCAGGTAGCTCAGTTGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCGGCGGTTCGATTCCGTCCCTGGGCACCA
tdbD5066|Pseudomonas_syringae_pv._tomato_str._DC3000|223283|Phe|GAA                 GCCCAGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCGGCGGTTCGATTCCGTCTCTGGGCACCA
tdbD4970|Ralstonia_solanacearum_GMI1000|267608|Phe|GAA                              GGCCCGGTAGCTCAGTTGGT-AGAGCAGCGGATTGAAAATCCGCGTGTCGGTGGTTCGATTCCGCCCCAGGCCACCA
tdbD5063|Rhodopirellula_baltica_SH_1|243090|Phe|GAA                                 GGTTAGATAGCTCAGTTGGT-AGAGCACGGCCCTGAAAAGGCCGGTGTCGGCGGTTCGAGCCCGCCTCTAACCA---
tdbD5077|Rhodopseudomonas_palustris_CGA009|258594|Phe|GAA                           GCCCAGGTAGCTCAGTTGGT-AGAGCATGCGACTGAAAATCGCAGTGTCGGTGGTTCGATCCCGCCCCTGGGCACCA
tdbD4964|Rickettsia_conorii_str._Malish_7|272944|Phe|GAA                            GGCCACGTAGCTCAGTCGGT-AGAGCAAAGGACTGAAAATCCTTGTGTCGTTGGTTCAATTCCAACCGTGGCCACCA
tdbD5018|Rickettsia_prowazekii_str._Madrid_E|272947|Phe|GAA                         GGCCACGTAGCTCAGTCGGT-AGAGCAAAGGACTGAAAATCCTTGTGTCGTTGGTTCAATTCCAACCGTGGCCACCA
tdbD5089|Rickettsia_typhi_str._Wilmington|257363|Phe|GAA                            GGCCACGTAGCTCAGTCGGT-AGAGCAAAGGACTGAAAATCCTTGTGTCGTTGGTTCAATTCCAACCGTGGCCACCA
tdbD4975|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|220341|Phe|GAA GCCCGGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA
tdbD5062|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|209261|Phe|GAA  GCCCGGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA
tdbD4968|Salmonella_typhimurium_LT2|99287|Phe|GAA                                   GCCCGGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA
tdbD5037|Shewanella_oneidensis_MR-1|211586|Phe|GAA                                  GCCCGAATAGCTCAGTCGGT-AGAGCAGAGGATTGAAAATCCTCGTGTCCCTGGTTCGATTCCGGGTTCGGGCACCA
tdbD5038|Shigella_flexneri_2a_str._301|198214|Phe|GAA                               GCCCGGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA
tdbD4976|Sinorhizobium_meliloti_1021|266834|Phe|GAA                                 GCCCGGATAGCTCAGTTGGT-AGAGCAGCGGATTGAAAATCCGCGTGTCGGTGGTTCAAATCCGCCTCCGGGCACCA
tdbD677|Spiroplasma_melliferum|2134|Phe|GAA                                         GGTTCAGTAGCTCAGTTGGT-AGAGCATTTGATTGAAGCTCAAAGTGTCGGCAGTTCAATTCTGTCCTGAACCACCA
tdbD5078|Staphylococcus_aureus_subsp._aureus_MRSA252|282458|Phe|GAA                 GGTTCAGTAGCTCAGTTGGT-AGAGCAATGGATTGAAGCTCCATGTGTCGGCAGTTCGACTCTGTCCTGAACCA---
tdbD5020|Staphylococcus_aureus_subsp._aureus_MW2|196620|Phe|GAA                     GGTTCAGTAGCTCAGTTGGT-AGAGCAATGGATTGAAGCTCCATGTGTCGGCAGTTCGACTCTGTCCTGAACCA---
tdbD4930|Staphylococcus_aureus_subsp._aureus_N315|158879|Phe|GAA                    GGTTCAGTAGCTCAGTTGGT-AGAGCAATGGATTGAAGCTCCATGTGTCGGCAGTTCGACTCTGTCCTGAACCA---
tdbD5049|Staphylococcus_epidermidis_ATCC_12228|176280|Phe|GAA                       GGTTCAGTAGCTCAGTTGGT-AGAGCAATGGATTGAAGCTCCATGTGTCGGCAGTTCGATTCTGTCCTGAACCA---
tdbD5039|Streptococcus_agalactiae_2603V/R|208435|Phe|GAA                            GGCTCGGTAGCTCAGTTGGT-AGAGCAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCTCGCGCCA---
tdbD5021|Streptococcus_agalactiae_NEM316|211110|Phe|GAA                             GGCTCGGTAGCTCAGTTGGT-AGAGCAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCTCGCGCCA---
tdbD5040|Streptococcus_mutans_UA159|210007|Phe|GAA                                  GGCTCGGTAGCTCAGTTGGT-AGAGCAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCTCGCGCCA---
tdbD4962|Streptococcus_pneumoniae_TIGR4|170187|Phe|GAA                              GGCTCGGTAGCTCAGTTGGT-AGAGCAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCTCGCGCCA---
tdbD4961|Streptococcus_pyogenes_M1_GAS|160490|Phe|GAA                               GGCTCGGTAGCTCAGTTGGT-AGAGCAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCTCGCGCCA---
tdbD5022|Streptococcus_pyogenes_MGAS315|198466|Phe|GAA                              GGCTCGGTAGCTCAGTTGGT-AGAGCAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCTCGCGCCA---
tdbD5055|Streptococcus_pyogenes_SSI-1|193567|Phe|GAA                                GGCTCGGTAGCTCAGTTGGT-AGAGCAATGGATTGAAGCTCCATGTGTCGGCGGTTCGATTCCGTCTCGCGCCA---
tdbD5061|Streptomyces_avermitilis_MA-4680|227882|Phe|GAA                            GGCTGGGTAGCTCAGTTGGTACGAGCGATCGCCTGAAAAGCGATAGGTCGCCGGTTCGACCCCGGCCCCAGCCA---
tdbD5036|Streptomyces_coelicolor_A3(2)|100226|Phe|GAA                               GGCTGGGTAGCTCAGTTGGTACGAGCGATCGCCTGAAAAGCGATAGGTCGCCGGTTCGACCCCGGCCCCAGCCA---
tdbD5091|Symbiobacterium_thermophilum_IAM_14863|292459|Phe|GAA                      GGCCCGGTAGCTCAGTTGGT-AGAGCACGCGACTGAAAATCGCGGTGTCGCCGGTTCGATTCCGGCCTGGGCCACCA
tdbD4952|Synechocystis_sp._PCC_6803|1148|Phe|GAA                                    GCCGGGATAGCTCAGTTGGT-AGAGCAGTGGACTGAAAATCCTCGTGTCGGCGGTTCAAGTCCGCCTCCTGGCA---
tdbD5026|Thermoanaerobacter_tengcongensis_MB4|273068|Phe|GAA                        GCCTCGATAGCTCAGTAGGT-AGAGCAAGGGACTGAAAATCCCTGTGTCAGTGGTTCGATTCCACTTCGAGGCACCA
tdbD5023|Thermosynechococcus_elongatus_BP-1|197221|Phe|GAA                          GCCGGGATAGCTCAGTTGGT-AGAGCAGAGGACTGAAAATCCTCGTGTCGCCAGTTCAATTCTGGCTCCTGGCA---
tdbD4953|Thermotoga_maritima_MSB8|243274|Phe|GAA                                    GGCCAGGTAGCTCAGTTGGT-AGAGCACTGGACTGAAAATCCAGGTGTCGGCGGTTCGATTCCGCCCCTGGCCACCA
tdbD5102|Thermus_thermophilus_HB27|262724|Phe|GAA                                   --CGAGGTAGCTCAGTTGGT-AGAGCATGCGACTGAAAATCGCAGTGTCGGCGGTTCGATTCCGCCCCTCGGCACCA
tdbD5103|Treponema_denticola_ATCC_35405|243275|Phe|GAA                              GCCGTTGTAGCTCAGTCGGT-AGAGCAAAGGACTGAAAATCCTTGTGTCGACAGTTCGATTCTGTCCGACGGCA---
tdbD4950|Treponema_pallidum_subsp._pallidum_str._Nichols|243276|Phe|GAA             GCCGTTGTAGCTCAGTCGGT-AGAGCAAAGGACTGAAAATCCTTGTGTCGACAGTTCGATTCTGTCCGACGGCA---
tdbD5050|Tropheryma_whipplei_str._Twist|203267|Phe|GAA                              GGCTCTGTAGCTCAGTTGGT-AGAGCGTTCGACTGAAAATCGAAAGGTCACCGGATCGATACCGGTCGGAGCCA---
tdbD5051|Tropheryma_whipplei_TW08/27|218496|Phe|GAA                                 GGCTCTGTAGCTCAGTTGGT-AGAGCGTTCGACTGAAAATCGAAAGGTCACCGGATCGATACCGGTCGGAGCCA---
tdbD4932|Ureaplasma_parvum_serovar_3|38504|Phe|GAA                                  GGTTTCGTAGCTCAGTCGGT-AGAGCAACGGACTGAAGATCCGTGTGTCGACAGTTCGATTCTGTCCGAAACCACCA
tdbD4928|Vibrio_cholerae_O1_biovar_El_Tor_str._N16961|243277|Phe|GAA                GCCTCGATAGCTCAGTCGGT-AGAGCAGAGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCA
tdbD5104|Wolbachia_endosymbiont_of_Drosophila_melanogaster|163164|Phe|GAA           GGCCTGATAGCTCAGTTGGT-AGAGCAAAGGACTGAAAATCCTTGTGTCGCTGGTTCGATTCCTGCTCAGGCCA---
tdbD5028|Xanthomonas_axonopodis_pv._citri_str._306|190486|Phe|GAA                   GGCCGAGTAGCTCAGTTGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCGGCGGTTCGATTCCGTCCTCGGCCACCA
tdbD5027|Xanthomonas_campestris_pv._campestris_str._ATCC_33913|190485|Phe|GAA       GGCCGAGTAGCTCAGTTGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCGGCGGTTCGATTCCGTCCTCGGCCACCA
tdbD4954|Xylella_fastidiosa_9a5c|160492|Phe|GAA                                     GGCCGGGTAGCTCAGTTGGT-AGAGCAGGGGACTGAAAATCCCCGTGTCGGGGGTTCGATTCCCTCCCCGGCCACCA
tdbD5052|Xylella_fastidiosa_Temecula1|183190|Phe|GAA                                GGCCGGGTAGCTCAGTCGGT-AGAGCAGGGGACTGAAAATCCCCGTGTCGGGGGTTCGATTCCCTCCCCGGCCACCA
tdbD5092|Yersinia_pestis_biovar_Microtus_str._91001|229193|Phe|GAA                  GCCCGGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA
tdbD4967|Yersinia_pestis_CO92|214092|Phe|GAA                                        GCCCGGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA
tdbD5030|Yersinia_pestis_KIM|187410|Phe|GAA                                         GCCCGGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA
tdbD5093|Yersinia_pseudotuberculosis_IP_32953|273123|Phe|GAA                        GCCCGGATAGCTCAGTCGGT-AGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCA
#=GC SS_cons                                                                        (((((((..((((.........)))).(((((.......))))).....(((((.......))))))))))))....
#=GC SN                                                                             0000000..1111.........1111.22222.......22222.....33333.......333330000000....

#=GF CS                                                                             77 columns, 21 paired, 16 covariant; 4 stems
//