# STOCKHOLM 1.0          BACTERIAL Glu
#=GC CS                                                                             .2533443..2232...........2322.46433.......33464.....45323.......323543443352....
#=GC BP                                                                             .+++++++..++++...........++++.+++++.......+++++.....+++++.......++++++++++++....
tdbD525|Acholeplasma_laidlawii|2148|Glu|TTC                                         -GGCCCGTTGGAGAAAC--GGTT-AACTCACATGCCTTTCACGCATGCATTCACGGGTTCGAATCCCGTACGGGTCACCA
tdbD4871|Acinetobacter_sp._ADP1|62977|Glu|TTC                                       -GTCCCTATCGTCTAGA--GGCCTAGGACATCGCCCTTTCACGGCGGTAA-CCGGGGTTCGAATCCCCGTAGGGACGCCA
tdbD542|Aeromonas_hydrophila|644|Glu|TTC                                            -GTCCCCTTCGCTAGA---GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA
tdbD4664|Agrobacterium_tumefaciens_str._C58|176299|Glu|TTC                          -GCGCCCTTCGTCTATC--GGTT-AGGACGTCAGATTTTCATTCTGAAAA-GAGGGGTTCGACTCCCCTAGGGCGTGCCA
tdbD4641|Aquifex_aeolicus_VF5|224324|Glu|TTC                                        -GCCCCCGTCGTCTAGCCTGGCCTAGGACGCCGGCCTTTCACGCCGGAAA-CGCGGGTTCAAATCCCGCCGGGGGTGCCA
tdbD4872|Bacillus_anthracis_str._A2012|191218|Glu|TTC                               -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA---
tdbD4813|Bacillus_anthracis_str._Ames|198094|Glu|TTC                                -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA---
tdbD4835|Bacillus_anthracis_str._Sterne|260799|Glu|TTC                              -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA---
tdbD4858|Bacillus_cereus_ATCC_10987|222523|Glu|TTC                                  -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA---
tdbD4799|Bacillus_cereus_ATCC_14579|226900|Glu|TTC                                  -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA---
tdbD4772|Bacillus_halodurans_C-125|272558|Glu|TTC                                   -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA---
tdbD540|Bacillus_sp._PS3|2334|Glu|TTC                                               -GGCCCTGTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAA-TCCGTACGGGTCA---
tdbD4602|Bacillus_subtilis_subsp._subtilis_str._168|224308|Glu|TTC                  -GGCCCGTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA---
tdbD4873|Bacillus_thuringiensis_serovar_konkukian_str._97-27|281309|Glu|TTC         -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA---
tdbD4810|Bacteroides_thetaiotaomicron_VPI-5482|226186|Glu|CTC                       -GGTGGGTTCGTCTAAC--GGTT-AGGACACATGCCTCTCACGCATGTAA-TACGAGTTCGATTCTCGTACCCACTA---
tdbD4816|Bartonella_henselae_str._Houston-1|283166|Glu|TTC                          -GCGCCCATCGTCTAGC--GGTC-AGGACGCCGCCCTTTCACGGCGGAAA-CAGGGGTTCGATTCCCCTTGGGCGTACCA
tdbD4877|Bartonella_quintana_str._Toulouse|283165|Glu|TTC                           -GCGCCCATCGTCTAGC--GGTT-AGGACGCCGCCCTTTCACGGCGGAAA-CAGGGGTTCGATTCCCCTTGGGCGTACCA
tdbD4817|Bdellovibrio_bacteriovorus_HD100|264462|Glu|TTC                            -GTTCCCATCGTCTAGG--GGCCTAGGACACCTCCCTTTCACGGAGGATA-CAGGGGTTCAAATCCCCTTGGGAACGCCA
tdbD4755|Bifidobacterium_longum_NCC2705|206672|Glu|TTC                              -GCCCCCATCGTCTAAC--GGTT-AGGACACCAGACTTTCAATCTGACAA-CGAGAGTTCGACTCTCTCTGGGGGTA---
tdbD4626|Borrelia_burgdorferi_B31|224326|Glu|TTC                                    -GTCCTCTTCGTCTATC--GGTT-AGGACTCCAGGTTTTCATCCTGGCAA-GAGGGGTTCGATTCCCCTAGAGGATG---
tdbD4775|Bradyrhizobium_japonicum_USDA_110|224911|Glu|CTC                           -GCTCCCTTCGTCTAGC--GGTT-AGGACGCGGCCCTCTCAAGGCTGAAA-CAGGGGTTCGATTCCCCTAGGGAGCGCCA
tdbD4654|Brucella_melitensis_16M|224914|Glu|TTC                                     -GCGCCCATCGTCTAGC--GGTT-AGGACGCCGCCCTTTCACGGCGGAAA-CAGGGGTTCGATTCCCCTTGGGCGTACCA
tdbD4757|Brucella_suis_1330|204722|Glu|TTC                                          -GCGCCCATCGTCTAGC--GGTT-AGGACGCCGCCCTTTCACGGCGGAAA-CAGGGGTTCGATTCCCCTTGGGCGTACCA
tdbD4603|Buchnera_aphidicola_str._APS_(Acyrthosiphon_pisum)|107806|Glu|TTC          -GTCCCCTTCGTCTAGA--GGTCTAGGACATCGCCCTTTCACGGCGGCAA-CAGGGGTTCAAATCCCCTAGGGGACG---
tdbD4801|Buchnera_aphidicola_str._Bp_(Baizongia_pistaciae)|224915|Glu|TTC           -GTCCCCTTCGTCTAGA--GGACTAGGACATCGCCCTTTCACGGCGATAA-CAGGGGTTCAAATCCCCTAGGGGACA---
tdbD4733|Buchnera_aphidicola_str._Sg_(Schizaphis_graminum)|198804|Glu|TTC           -GTCCCCTTCGTCTAGA--GGTT-AGGACATCGCCCTTTCACGGCGGCAA-CAGGGGTTCAAATCCCCTAGGGGACG---
tdbD4627|Campylobacter_jejuni_subsp._jejuni_NCTC_11168|192222|Glu|TTC               -GGCCCATTCGTCTAGC--GGTT-AGGACATCGCCCTTTCACGGCGGTAA-CACGAGTTCGAGTCTCGTATGGGTCACCA
tdbD4878|Candidatus_Blochmannia_floridanus|203907|Glu|TTC                           -GTCCCCTTCGTCTAGA--GGTT-AGGACACTGCCCTTTCACGGCGGCAA-CAGGGGTTCGAAACCCCTAGGGGACA---
tdbD4823|Candidatus_Protochlamydia_amoebophila_UWE25|264201|Glu|TTC                 -GGCCCCATCGTCTAGCCAGGTCTAGGACACCGGATTTTCATTCCGATAA-CAGGGGTTCGAATCCCCTTGGGGTCA---
tdbD4628|Caulobacter_crescentus_CB15|190650|Glu|TTC                                 -GGTCCCTTCGTCTATC--GGTT-AGGACGCCAGATTTTCAATCTGGAGA-GAGGGGTTCGACTCCCCTAGGGACTGCCA
tdbD4647|Chlamydia_muridarum_Nigg|243161|Glu|TTC                                    -GGCCCCATCGTCTAGCCTGGCCCAGGACATCGGATTTTCATTCCGGTAA-CAGGGGTTCGAATCCCCTTGGGGTCA---
tdbD4600|Chlamydia_trachomatis_D/UW-3/CX|272561|Glu|TTC                             -GGCCCCATCGTCTAGCCTGGCCCAGGACATCGGATTTTCATTCCGGTAA-CAGGGGTTCGAATCCCCTTGGGGTCA---
tdbD4598|Chlamydophila_pneumoniae_AR39|115711|Glu|TTC                               -GGCCCCATCGTCTAGCCTGGCCCAGGACATCGGATTTTCATTCCGGTAA-CAGGGGTTCGAATCCCCTTGGGGTCA---
tdbD4599|Chlamydophila_pneumoniae_CWL029|115713|Glu|TTC                             -GGCCCCATCGTCTAGCCTGGCCCAGGACATCGGATTTTCATTCCGGTAA-CAGGGGTTCGAATCCCCTTGGGGTCA---
tdbD4616|Chlamydophila_pneumoniae_J138|138677|Glu|TTC                               -GGCCCCATCGTCTAGCCTGGCCCAGGACATCGGATTTTCATTCCGGTAA-CAGGGGTTCGAATCCCCTTGGGGTCA---
tdbD4729|Chlorobium_tepidum_TLS|194439|Glu|TTC                                      -GGCCCCATCGACTAGT--GGTT-AGGTCATCACCCTTTCAAGGTGGTAG-CACGGGTTCGAATCCCGTTGGGGTCA---
tdbD4651|Clostridium_acetobutylicum_ATCC_824|272562|Glu|TTC                         -GGCCCGTTGGTCAAGC--GGTT-AAGACACCACCCTTTCACGGTGGTAA-CATGGGTTCGATTCCCGTACGGGTCA---
tdbD4646|Clostridium_perfringens_str._13|195102|Glu|TTC                             -GGCCCCTTGGTCAAGC--GGTT-AAGACACCACCCTTTCACGGTGGTAA-CAGGGGTTCGATTCCCCTAGGGGTCACCA
tdbD4776|Clostridium_tetani_E88|212717|Glu|TTC                                      -GGCCCCTTGGTCAAGT--GGTT-AAGACACCACCCTTTCACGGTGGTAA-CATGGGTTCGAATCCCGTAGGGGTCACCA
tdbD4818|Corynebacterium_diphtheriae_NCTC_13129|257309|Glu|CTC                      -GCCCCGTTCGTCTAGC--GGCCTAGGACGTCGGCCTCTCACGCCGGTAA-CACGGGTTCAAATCCCGTACGGGGTA---
tdbD4760|Corynebacterium_efficiens_YS-314|196164|Glu|TTC                            -GCTCCCATCGTCTAGG--GGCCTAGGACACCGCCCTTTCACGGCGGCGA-CACGGGTTCGAATCCCGTTGGGAGTA---
tdbD4736|Corynebacterium_glutamicum_ATCC_13032|196627|Glu|CTC                       -GCCCCGTTCGTCTAGT--GGCCTAGGACGCCGGCCTCTCACGCCGGTAA-CACGGGTTCAAATCCCGTACGGGGTA---
tdbD4797|Coxiella_burnetii_RSA_493|227377|Glu|TTC                                   -GTCCCCATCGTCTAGA--GGCCTAGGACATCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTTGGGGACGCCA
tdbD4629|Deinococcus_radiodurans_R1|243230|Glu|TTC                                  -GGCCCCATCGTCTAAC--GGTT-AGGACACTACCCTTTCAAGGTAGCGA-TACGGGTTCGAATCCCGTTGGGGTCACCA
tdbD4859|Desulfovibrio_vulgaris_subsp._vulgaris_str._Hildenborough|882|Glu|TTC      -GTTCCCATCGTCTAGCC-GGCCTAGGACAACGGCCTTTCACGCCGTCGA-CAGGGGTTCGAATCCCCTTGGGAACGCCA
tdbD4778|Enterococcus_faecalis_V583|226185|Glu|TTC                                  -GGCCCGTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAGTCCCGTACGGGTCA---
tdbD4802|Escherichia_coli_CFT073|199310|Glu|TTC                                     -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA
tdbD4617|Escherichia_coli_K12|83333|Glu|TTC                                         -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA
tdbD4618|Escherichia_coli_O157:H7|83334|Glu|TTC                                     -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA
tdbD4619|Escherichia_coli_O157:H7_EDL933|155864|Glu|TTC                             -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA
tdbD4730|Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586|190304|Glu|TTC         -GCCCCGTTCGTTCAGT--GGTT-AGGACATCAGATTTTCACTCTGGAAA-CAGGGGTTCAATTCCCCTACGGGGTACCA
tdbD4836|Geobacter_sulfurreducens_PCA|243231|Glu|TTC                                -GGTCCCATCGTCTAGT--GGTT-AGGACACCGGCCTTTCACGTCGGTAA-CAGGGGTTCAAGTCCCCTTGGGATCACCA
tdbD533|Haemophilus_ducreyi|730|Glu|TTC                                             -GTCCCCATCGTCTAGA--GGCCTAGGACATCGCCCTTTCACGGCGGTAA-CCGGGGTTCGAATCCCCGTGGGGACGCCA
tdbD4625|Haemophilus_influenzae_Rd_KW20|71421|Glu|TTC                               -GTCCCCATCGTCTAGA--GGCCTAGGACATCGCCCTTTCACGGCGGTAA-CCGGGGTTCGAATCCCCGTGGGGACGCCA
tdbD4793|Helicobacter_hepaticus_ATCC_51449|235279|Glu|TTC                           -GACCCTTTCATCTAGCT-GGCCAAGGATATCACCCTTTCTCGGTGAAAA-CGGAAGTTCAAATCTTTCAAGGGTCGCCA
tdbD4622|Helicobacter_pylori_26695|85962|Glu|TTC                                    -GGCTCCTTCATCTAGT--GGTT-AGGATACCACCCTTTCACGGTGGTTA-CAGGGGTTCAAATCCCCTAGGAGTCACCA
tdbD4624|Helicobacter_pylori_J99|85963|Glu|TTC                                      -GGCTCCTTCATCTAGT--GGTT-AGGATACCACCCTTTCACGGTGGTTA-CAGGGGTTCAAATCCCCTAGGAGTCACCA
tdbD534|Lactobacillus_delbrueckii_subsp._bulgaricus|1585|Glu|TTC                    -GGCCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CATGGGTTCAAATCCCGTACGGGTCA---
tdbD4842|Lactobacillus_johnsonii_NCC_533|257314|Glu|TTC                             -GACCCGTTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CATGAGTTCAAATCTCGTACGGGTCA---
tdbD4779|Lactobacillus_plantarum_WCFS1|220668|Glu|TTC                               -GACCCCTTGGTCAAGT--GGTTTAAGACACTGCCCTTTCACGGCAGTAA-CATGGGTTCGAATCCCGTAGGGGTCA---
tdbD537|Lactococcus_lactis|1358|Glu|TTC                                             -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA---
tdbD4844|Leifsonia_xyli_subsp._xyli_str._CTCB07|281090|Glu|TTC                      -GGCCCCATCGTTTAGT--GGCCTAGGACACCGCCCTTTCACGGCGGCAG-CACGGGTTCGAATCCCGTTGGGGTCA---
tdbD4761|Leptospira_interrogans_serovar_Lai_str._56601|189518|Glu|TTC               -GCCGCCATCGTCTAGT--GGTT-AGGACACAAGATTTTCATTCTTGGAA-CAGGGGTTCAATTCCCCTTGGCGGTACCA
tdbD4642|Listeria_innocua_Clip11262|272626|Glu|TTC                                  -GGCCCGTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA---
tdbD4645|Listeria_monocytogenes_EGD-e|169963|Glu|TTC                                -GGCCCGTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA---
tdbD4861|Listeria_monocytogenes_str._4b_F2365|265669|Glu|TTC                        -GGCCCGTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA---
tdbD4862|Mesoplasma_florum_L1|265311|Glu|TTC                                        -GGCCTGTTGGTGAAGC--GGTT-AACACACACGGTTTTCATCCGTGGACACACGGGTTCGAACCCCGTACAGGCTACCA
tdbD4655|Mesorhizobium_loti_MAFF303099|266835|Glu|TTC                               -GCGCCCATCGTCTAGC--GGTT-AGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGATTCCCCTTGGGCGTACCA
tdbD4794|Mycobacterium_bovis_AF2122/97|233413|Glu|TTC                               -GCCCCCTTCGTCTAGAC-GGCCTAGGACGCCGCCCTTTCAAGGCGGTAA-CGCGGGTTCGAATCCCGTAGGGGGTA---
tdbD4614|Mycobacterium_leprae_TN|272631|Glu|TTC                                     -GCCCCCTTCGTCTAGT--GGCCTAGGACGCCGCCCTTTCAAGGCGGTAG-CGCGGGTTCGAATCCCGTAGGGGGTA---
tdbD4605|Mycobacterium_tuberculosis_CDC1551|83331|Glu|TTC                           -GCCCCCTTCGTCTAGAC-GGCCTAGGACGCCGCCCTTTCAAGGCGGTAA-CGCGGGTTCGAATCCCGTAGGGGGTA---
tdbD4821|Mycobacterium_tuberculosis_H37Rv|83332|Glu|TTC                             -GCCCCCTTCGTCTAGAC-GGCCTAGGACGCCGCCCTTTCAAGGCGGTAA-CGCGGGTTCGAATCCCGTAGGGGGTA---
tdbD520|Mycoplasma_capricolum|2095|Glu|TTC                                          -GGCCTGTTGGTGAAGC--GGTT-AACACACACGGTTTTCATCCGTGGACACACGGGTTCGAACCCCGTACAGGCTACCA
tdbD4792|Mycoplasma_gallisepticum_R|233150|Glu|TTC                                  -GGCGCGTTGGTGAAGT--GACTTAACACACACGCCTTTCACGCGTGCATTCACGGGTTTGAATCCCGTACGCGTCACCA
tdbD4630|Mycoplasma_genitalium_G37|243273|Glu|TTC                                   -GGCGCGTTGGTGAAGA--GACTTAACACACACGCCTTTCACGCGTGCATTCACGGGTTTGAATCCCGTACGCGTCACCA
tdbD522|Mycoplasma_mycoides|2102|Glu|TTC                                            -GGCCTGTTGGTGAAGC--GGTT-AACACACACGGTTTTCATCCGTGGACACACGGGTTCGAACCCCGTACAGGCTACCA
tdbD4631|Mycoplasma_pneumoniae_M129|272634|Glu|TTC                                  -GGCGCGTTGGTGAAGA--GACTTAACACACACGCCTTTCACGCGTGCATTCACGGGTTTGAATCCCGTACGCGTCACCA
tdbD4663|Mycoplasma_pulmonis_UAB_CTIP|272635|Glu|TTC                                -GGCCTATTGGTGAAGA--GGTT-AACACACATGGTTTTCATCCATGCATGCGCGGGTTCGAATCCCGCATAGGTCACCA
tdbD4607|Neisseria_meningitidis_MC58|122586|Glu|TTC                                 -GCGCCCATCGTCTAGC--GGTT-AGGACATCGCCCTTTCACGGCGGTAA-CCGGGGTTCGATTCCCCGTGGGCGTGCCA
tdbD4609|Neisseria_meningitidis_Z2491|122587|Glu|TTC                                -GCGCCCATCGTCTAGC--GGTT-AGGACATCGCCCTTTCACGGCGGTAA-CCGGGGTTCGATTCCCCGTGGGCGTGCCA
tdbD4809|Nitrosomonas_europaea_ATCC_19718|228410|Glu|TTC                            -GTCCCCATCGTCTAGA--GGCCTAGGACACCACCCTTTCACGGTGGGTA-CAGGGGTTCGAATCCCCTTGGGGACGCCA
tdbD4662|Nostoc_sp._PCC_7120|103690|Glu|TTC                                         -GCCCCCATCGTCTAGA--GGCCTAGGACACCTCCCTTTCACGGAGGTAA-CGGGGATTCGAATTCCCCTGGGGGTA---
tdbD4763|Oceanobacillus_iheyensis_HTE831|221109|Glu|TTC                             -GGCCCGTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGGTCA---
tdbD4820|Onion_yellows_phytoplasma_OY-M|262768|Glu|TTC                              -GGCCCGTTGGAGAAAC--GGTT-AACTCACATGCCTTTCACGCATGCATTCACGGGTTCAAATCCCGTACGGGTCACCA
tdbD4632|Pasteurella_multocida_subsp._multocida_str._Pm70|272843|Glu|TTC            -GTCCCCATCGTCTAGA--GGCCTAGGACATCGCCCTTTCACGGCGGTAA-CCGGGGTTCGAATCCCCGTGGGGACGCCA
tdbD4824|Photorhabdus_luminescens_subsp._laumondii_TTO1|243265|Glu|TTC              -GTCCCCTTCGTCTAGA--GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA
tdbD532|Plesiomonas_shigelloides|703|Glu|TTC                                        -GTCCCCTTCGTCTAGA--GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACA---
tdbD4846|Porphyromonas_gingivalis_W83|242619|Glu|TTC                                -GGCCCATTCGTCTATC--GGTT-AGGACGCAAGATTTTCATTCTTGAAA-GAGGGGTTCGATTCCCCTATGGGCTA---
tdbD4864|Propionibacterium_acnes_KPA171202|267747|Glu|TTC                           -GTCCCGGTCGTCCAGA--GGCCTAGGACACCGCCCTTTCAAGGCGGCAA-CGCGGGTTCGAATCCCGTCCGGGATA---
tdbD4635|Pseudomonas_aeruginosa_PAO1|208964|Glu|TTC                                 -GTCCCCTTCGTCTAGT--GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAGTCCCCTAGGGGACGCCA
tdbD4812|Pseudomonas_syringae_pv._tomato_str._DC3000|223283|Glu|TTC                 -GTCCCCTTCGTCTAGT--GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAGTCCCCTAGGGGACGCCA
tdbD4661|Ralstonia_solanacearum_GMI1000|267608|Glu|TTC                              -GTCCCCTTCGTCTAGA--GGCCTAGGACATCACCCTTTCACGGTGAGTA-CAGGGGTTCGAATCCCCTAGGGGACGCCA
tdbD4807|Rhodopirellula_baltica_SH_1|243090|Glu|TTC                                 -GGCCCCTTCGTCTAGC--GGTCTAGGACATCGCCCTTTCACGGCGGTAA-CACGGGTTCGAGTCCCGTAGGGGTCA---
tdbD4825|Rhodopseudomonas_palustris_CGA009|258594|Glu|CTC                           -GCTCCCTTCGTCTAGC--GGTT-AGGACGCGGCCCTCTCAAGGCTGAAA-CAGGGGTTCGATTCCCCTAGGGAGCGCCA
tdbD4652|Rickettsia_conorii_str._Malish_7|272944|Glu|TTC                            -GGCCCCTTCGTCTAGT--GGTT-AGGACACCACCCTTTCACGGTGGGAA-CACGGGTTCGAGTCCCGTAGGGGTCACCA
tdbD4734|Rickettsia_prowazekii_str._Madrid_E|272947|Glu|TTC                         -GGCCCCTTCGTCTAGC--GGTT-AGGACACCACCCTTTCACGGTGGGAA-CACGGGTTCAAGTCCCGTAGGGGTCACCA
tdbD4847|Rickettsia_typhi_str._Wilmington|257363|Glu|TTC                            -GGCCCCTTCGTCTAGC--GGTT-AGGACACCACCCTTTCACGGTGGCAA-CACGGGTTCAAGTCCCGTAGGGGTCACCA
tdbD4665|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|220341|Glu|TTC -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA
tdbD4805|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|209261|Glu|TTC  -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA
tdbD544|Salmonella_enteritidis|592|Glu|TTC                                          -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA
tdbD4660|Salmonella_typhimurium_LT2|99287|Glu|TTC                                   -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA
tdbD4767|Shewanella_oneidensis_MR-1|211586|Glu|TTC                                  -GTCCCCTTCGTCTAGA--GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGATACCA
tdbD4768|Shigella_flexneri_2a_str._301|198214|Glu|TTC                               -GTCCCCTTCGTCTAGA--GGCCCAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGAATCCCCTAGGGGACGCCA
tdbD4666|Sinorhizobium_meliloti_1021|266834|Glu|TTC                                 -GCGCCCATCGTCTAGC--GGTCTAGGACGCCGCCCTTTCACGGCGGAAA-CACGGGTTCGATTCCCGTTGGGCGTGCCA
tdbD4828|Staphylococcus_aureus_subsp._aureus_MRSA252|282458|Glu|TTC                 -GGCTCCTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAGTCCCGTAGGAGTCA---
tdbD4739|Staphylococcus_aureus_subsp._aureus_MW2|196620|Glu|TTC                     -GGCTCCTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAGTCCCGTAGGAGTCA---
tdbD4611|Staphylococcus_aureus_subsp._aureus_N315|158879|Glu|TTC                    -GGCTCCTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAGTCCCGTAGGAGTCA---
tdbD4783|Staphylococcus_epidermidis_ATCC_12228|176280|Glu|TTC                       -GGCTCCTTGGTCAAGC--GGTT-AAGACACCGCCCTTTCACGGCGGTAA-CACGGGTTCGAGTCCCGTAGGAGTCA---
tdbD4769|Streptococcus_agalactiae_2603V/R|208435|Glu|TTC                            -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA---
tdbD4740|Streptococcus_agalactiae_NEM316|211110|Glu|TTC                             -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA---
tdbD4771|Streptococcus_mutans_UA159|210007|Glu|TTC                                  -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA---
tdbD4649|Streptococcus_pneumoniae_TIGR4|170187|Glu|TTC                              -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA---
tdbD4648|Streptococcus_pyogenes_M1_GAS|160490|Glu|TTC                               -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA---
tdbD4741|Streptococcus_pyogenes_MGAS315|198466|Glu|TTC                              -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA---
tdbD4796|Streptococcus_pyogenes_SSI-1|193567|Glu|TTC                                -GGTCCGTTGGTCAAGG--GGTT-AAGACACCGCCTTTTCACGGCGGTAA-CACGGGTTCGAATCCCGTACGGACTA---
tdbD4804|Streptomyces_avermitilis_MA-4680|227882|Glu|TTC                            -GCCCTCATCGTCTAGC--GGCCTAGGACGCCGCCCTTTCAAGGCGGTAG-CACGGGTTCGAATCCCGTTGGGGGCA---
tdbD4764|Streptomyces_coelicolor_A3(2)|100226|Glu|TTC                               -GCCCTCATCGTCTAGC--GGCCTAGGACGCCGCCCTTTCAAGGCGGTAG-CACGGGTTCGAATCCCGTTGGGGGCA---
tdbD530|Streptomyces_lividans|1916|Glu|CTC                                          -GCCCCCGTTGTGTAGC--GGCCTAGCACGCCGCCCTCTCAAGGCGGTAG-CGCCGGTTCGAATCCGGTCGGGGGTA---
tdbD529|Streptomyces_rimosus|1927|Glu|CTC                                           -GCCCCCGTTGTGTAGC--GGCCTAGCACGCCGCCCTCTCAAGGCGGTAG-CGCCGGTTCGAATCCGGTCGGGGGTA---
tdbD4850|Symbiobacterium_thermophilum_IAM_14863|292459|Glu|TTC                      -GACCCCATCGTCTAGA--GGCCTAGGACACCACCCTTTCACGGTGGCGG-CACGGGTTCGAATCCCGTTGGGGTCGCCA
tdbD4636|Synechocystis_sp._PCC_6803|1148|Glu|TTC                                    -GCCCCCATCGTCTAGA--GGCCTAGGACACCTCCCTTTCACGGAGGCGA-CAGGGATTCGAATTCCCTTGGGGGTA---
tdbD4747|Thermoanaerobacter_tengcongensis_MB4|273068|Glu|TTC                        -GGCCCCGTGGTCAAGT--GGTT-AAGACACCGCCCTTTCACGGCGGCAA-CACGGGTTCGAATCCCGTCGGGGTCACCA
tdbD4742|Thermosynechococcus_elongatus_BP-1|197221|Glu|TTC                          -GCCCCCATCGTCTAGT--GGCCTAGGACACCTCCCTTTCACGGAGGCGA-CGGGGATTCGAATTCCCCTGGGGGTA---
tdbD4638|Thermotoga_maritima_MSB8|243274|Glu|TTC                                    -GCCCCCATCGTCTAGC--GGCCTAGGACACTGGCCTTTCAAGCCAGAGG-CAGGGGTTCGAATCCCCTTGGGGGCGCCA
tdbD4867|Thermus_thermophilus_HB27|262724|Glu|CTC                                   AGGCCCCATCGTCTAGC--GGTT-AGGACGCGGCCCTCTCAAGGCCGAAA-CGGGGGTTCGATTCCCCCTGGGGTCACCA
tdbD4868|Treponema_denticola_ATCC_35405|243275|Glu|TTC                              -GTCTCCTTCGTCTAGT--GGTT-AGGACATCGGGTTTTCATCCCGACAA-CAGGGGTTCAATTCCCCTAGGAGATG---
tdbD4633|Treponema_pallidum_subsp._pallidum_str._Nichols|243276|Glu|CTC             -GGTCCCTTCGTCTATC--GGTT-AGGACATGAGATTCTCAATCTCAAAA-GACGGGTTCAATTCCCGTAGGGACTA---
tdbD4785|Tropheryma_whipplei_str._Twist|203267|Glu|CTC                              -GGCCCCATCGTCTAGA--GGTCTAGGACGTCGCCCTCTCACGGCGGTAG-CGCGGGTTCGAATCCCGCTGGGGTCA---
tdbD4788|Tropheryma_whipplei_TW08/27|218496|Glu|CTC                                 -GGCCCCATCGTCTAGA--GGTCTAGGACGTCGCCCTCTCACGGCGGTAG-CGCGGGTTCGAATCCCGCTGGGGTCA---
tdbD4615|Ureaplasma_parvum_serovar_3|38504|Glu|TTC                                  -GGCCTGTTGGTGAAGT--GACTGAACACACACGCCTTTCACGCGTGCATTCACGGGTTTGAATCCCGTACAGGTCACCA
tdbD4610|Vibrio_cholerae_O1_biovar_El_Tor_str._N16961|243277|Glu|TTC                -GTCCCGTTCGTCTAGA--GGCCTAGGACACCGCCCTTTCACGGCGGTAA-CAGGGGTTCGACTCCCCTACGGGATACCA
tdbD4870|Wolbachia_endosymbiont_of_Drosophila_melanogaster|163164|Glu|TTC           -GACTCTTTCGTCTAGT--GGTT-AGGACACCACCCTTTCACGGTGGTAA-CACGGGTTCAAATCCCGTAAGAGTCA---
tdbD4750|Xanthomonas_axonopodis_pv._citri_str._306|190486|Glu|CTC                   -GCTCCCTTCGTCTAAT--GGTT-AGGACGTGGCCCTCTCAAGGCTAAAA-CAGGGGTTCGAGTCCCCTAGGGAGCACCA
tdbD4748|Xanthomonas_campestris_pv._campestris_str._ATCC_33913|190485|Glu|CTC       -GCTCCCTTCGTCTAGC--GGTT-AGGACGTGGCCCTCTCAAGGCTAAAA-CAGGGGTTCGAGCCCCCTAGGGAGCGCCA
tdbD4639|Xylella_fastidiosa_9a5c|160492|Glu|CTC                                     -GCTCCCTTCGTCTAGC--GGTT-AGGACATGGCCCTCTCAAGGCTAAAA-CAGGGGTTCGAGCCCCCTAGGGAGCGCCA
tdbD4790|Xylella_fastidiosa_Temecula1|183190|Glu|CTC                                -GCTCCCTTCGTCTAGC--GGTT-AGGACATGGCCCTCTCAAGGCTAAAA-CAGGGGTTCGAGCCCCCTAGGGAGCGCCA
tdbD4852|Yersinia_pestis_biovar_Microtus_str._91001|229193|Glu|TTC                  -GTCCCCATCGTCTAGA--GGCCTAGGACACTGCCCTTTCACGGCTGTAA-CAGGGGTTCGAATCCCCTTGGGGACGCCA
tdbD4657|Yersinia_pestis_CO92|214092|Glu|TTC                                        -GTCCCCATCGTCTAGA--GGCCTAGGACACTGCCCTTTCACGGCTGTAA-CAGGGGTTCGAATCCCCTTGGGGACGCCA
tdbD4754|Yersinia_pestis_KIM|187410|Glu|TTC                                         -GTCCCCATCGTCTAGA--GGCCTAGGACACTGCCCTTTCACGGCTGTAA-CAGGGGTTCGAATCCCCTTGGGGACGCCA
tdbD4853|Yersinia_pseudotuberculosis_IP_32953|273123|Glu|TTC                        -GTCCCCATCGTCTAGA--GGCCTAGGACACTGCCCTTTCACGGCTGTAA-CAGGGGTTCGAATCCCCTTGGGGACGCCA
#=GC SS_cons                                                                        .(((((((..((((...........)))).(((((.......))))).....(((((.......))))))))))))....
#=GC SN                                                                             .0000000..1111...........1111.22222.......22222.....33333.......333330000000....

#=GF CS                                                                             80 columns, 21 paired, 21 covariant; 4 stems
//