# STOCKHOLM 1.0          BACTERIAL Cys
#=GC CS                                                                             2235563..435............534.55344.......44355.....5522.........22553655322....
#=GC BP                                                                             +++++++..+++1..........1+++.+++++.......+++++.....+++++.......++++++++++++....
tdbD251|Acholeplasma_laidlawii|2148|Cys|CTT                                         GCATCCATAGCTCAGTTGGT--AGAGCAACAGACTCTTAATCTGTGGGTCCACGGTTCGAGCCCGTGTGGGTGTACCA
tdbD4340|Acinetobacter_sp._ADP1|62977|Cys|GCA                                       GGCGGGGTGGCAGAGT-GGT--CATGCAGCGGACTGCAACTCCGTGTA-CGCCGGTTCGATTCCGACCTCCGCCTCCA
tdbD4195|Agrobacterium_tumefaciens_str._C58|176299|Cys|GCA                          -GCCTCGTGGCGGAGT-GGT--GACGCAGAGGACTGCAAATCCTTGTA-CCCCGGTTCAATTCCGGGCGAGGCCTCCA
tdbD4178|Aquifex_aeolicus_VF5|224324|Cys|GCA                                        GGCGACGTGGCCGAGC-GGT--TAGGCGGGGGACTGCAAATCCCCTTTACGGCGGTTCGAATCCGCCCGTCGCCTCCA
tdbD4341|Bacillus_anthracis_str._A2012|191218|Cys|GCA                               GGCGGCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CACCGGTTCAAATCCGGTTGCCGCCT---
tdbD4310|Bacillus_anthracis_str._Ames|198094|Cys|GCA                                GGCGGCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CACCGGTTCAAATCCGGTTGCCGCCT---
tdbD4320|Bacillus_anthracis_str._Sterne|260799|Cys|GCA                              GGCGGCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CACCGGTTCAAATCCGGTTGCCGCCT---
tdbD4332|Bacillus_cereus_ATCC_10987|222523|Cys|GCA                                  GGCGGCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CACCGGTTCAAATCCGGTTGCCGCCT---
tdbD4298|Bacillus_cereus_ATCC_14579|226900|Cys|GCA                                  GGCGGCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CACCGGTTCAAATCCGGTTGCCGCCT---
tdbD4283|Bacillus_halodurans_C-125|272558|Cys|GCA                                   GGCGGCATAGCCAAGT-GGT--AAGGCACGGGTCTGCAAAACCCTTAT-CCCCGGTTCGAATCCGGGTGCCGCCT---
tdbD4149|Bacillus_subtilis_subsp._subtilis_str._168|224308|Cys|GCA                  GGCGGCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CCCCGGTTCGAATCCGGGTGTCGCCT---
tdbD4343|Bacillus_thuringiensis_serovar_konkukian_str._97-27|281309|Cys|GCA         GGCGATATAGCCAAAT-GGT--AAGGCAAAGGTCTGCAAAACCTTGAT-CGCCGGTTCAAATCCGGCTATCGCCT---
tdbD4308|Bacteroides_thetaiotaomicron_VPI-5482|226186|Cys|GCA                       GGTTCCTTGGATGAGT-GGCT-TAGTCAGCGGTCTGCAAAACCGTGTA-CGGCGGTTCGAATCCGCCAGGAACCT---
tdbD4311|Bartonella_henselae_str._Houston-1|283166|Cys|GCA                          GGCCTCGTGCGGGAAT-GGT--TACGCAGAGGACTGCAAATCCTTGTA-TCCCGGTTCGATCCCGGGCGAGGCCTCCA
tdbD4345|Bartonella_quintana_str._Toulouse|283165|Cys|GCA                           GGCCTCGTGGCGGAAT-GGT--TACGCAGAGGACTGCAAATCCTTGTA-TCCCGGTTCGATTCCGGGCGAGGCCTCCA
tdbD4312|Bdellovibrio_bacteriovorus_HD100|264462|Cys|GCA                            GGTGATGTGGCCGAGG-GGT--TAGGCTCAGCTCTGCAAAAGCTGCTA-CAGCGGTTCAAATCCGCTCGTCACCTCCA
tdbD4273|Bifidobacterium_longum_NCC2705|206672|Cys|GCA                              GGTGGGTTAGCCAAGC-GGT--TAGGCAGCGGCCTGCAAAGCCGTATA-GACGAGTTCGACTCTCGTACCCACCT---
tdbD4166|Borrelia_burgdorferi_B31|224326|Cys|GCA                                    GGCGCTGTACCCAAGT-GGCT-AAGGGAGAAGTCTGCAAAACTTTGATTCGCCGGTTCGATTCCGGTCAGCGCCT---
tdbD4321|Borrelia_garinii_PBi|290434|Cys|GCA                                        GGCGCTGTACCCAAGT-GGCT-AAGGGAGAAGTCTGCAAAACTTTGATTCGCCGGTTCGATTCCGGTCAGCGCCT---
tdbD4284|Bradyrhizobium_japonicum_USDA_110|224911|Cys|GCA                           GGCCACGTGGCGGAGT-GGT--TACGCGCCGGTCTGCAAAACCGTTTA-CTCGGGTTCGAGTCCCGACGTGGCCTCCA
tdbD4187|Brucella_melitensis_16M|224914|Cys|GCA                                     GGCCTCGTGGCGGAGT-GGT--TACGCAGAGGACTGCAAATCCTTGCA-CCCCGGTTCGATTCCGGGCGAGGCCTCCA
tdbD4274|Brucella_suis_1330|204722|Cys|GCA                                          GGCCTCGTGGCGGAGT-GGT--TACGCAGAGGACTGCAAATCCTTGCA-CCCCGGTTCGATTCCGGGCGAGGCCTCCA
tdbD4150|Buchnera_aphidicola_str._APS_(Acyrthosiphon_pisum)|107806|Cys|GCA          GGCGTGTTGACAGATT-GGA--TATGTAGCGGACTGCAAATCCGTGCA-ACCCGGTTCGATTCCGGGATACGCCT---
tdbD4299|Buchnera_aphidicola_str._Bp_(Baizongia_pistaciae)|224915|Cys|GCA           GGCGCGTTGACAGATT-GGT--TATGTAGCGGATTGCAAATCCGCCTA-GCCCGGTTCAATTCCGGGATGCGCCT---
tdbD4259|Buchnera_aphidicola_str._Sg_(Schizaphis_graminum)|198804|Cys|GCA           GGCGTGTTGACAGATT-GGC--TATGTAGCGGACTGCAAATCCGTATA-ACCCGGTTCGATTCCGGGATACGCCT---
tdbD4167|Campylobacter_jejuni_subsp._jejuni_NCTC_11168|192222|Cys|GCA               GGCGACATAGCCAAGC-GGT--AAGGCATGGGCCTGCAAAGCCTTGAT-CTCCGGTTCGAATCCGGATGTCGCCTCCA
tdbD4346|Candidatus_Blochmannia_floridanus|203907|Cys|GCA                           GGCGCGTTAACAAAGT-GGT--AATGTAGCGGACTGCAAATCCGTATA-GCTCGGTTCGAATCCGAGACGCGCCT---
tdbD4316|Candidatus_Protochlamydia_amoebophila_UWE25|264201|Cys|GCA                 GGTGGCATAGCCAAGT-GGT--AAGGCAGAAGCCTGCAAAGCTTCCATCCCCCAGTTCGAATCTGGGTGCCACCT---
tdbD4168|Caulobacter_crescentus_CB15|190650|Cys|GCA                                 GGCCCGGTGGCGGAGT-GGT--GACGCAGCGGACTGCAAATCCGTGCA-CGCCGGTTCGATTCCGGCCCGGGCCTCCA
tdbD4182|Chlamydia_muridarum_Nigg|243161|Cys|GCA                                    GGTGGCATCGCCAAGC-GGT--AAGGCCGAGGCCTGCAAAGCCTCTAT-CCCCGGTTCGATTCCGGGTGCCACCT---
tdbD4147|Chlamydia_trachomatis_D/UW-3/CX|272561|Cys|GCA                             GGTGGCATCGCCAAGC-GGT--AAGGCCGAGGCCTGCAAAGCCTCTAT-CCCCGGTTCGATTCCGGGTGCCACCT---
tdbD4145|Chlamydophila_pneumoniae_AR39|115711|Cys|GCA                               GGTGGCATAGCCAAGC-GGT--AAGGCCGAGGCCTGCAAAGCCTCTAT-CCCCGGTTCGATTCCGGGTGCCACCT---
tdbD4146|Chlamydophila_pneumoniae_CWL029|115713|Cys|GCA                             GGTGGCATAGCCAAGC-GGT--AAGGCCGAGGCCTGCAAAGCCTCTAT-CCCCGGTTCGATTCCGGGTGCCACCT---
tdbD4159|Chlamydophila_pneumoniae_J138|138677|Cys|GCA                               GGTGGCATAGCCAAGC-GGT--AAGGCCGAGGCCTGCAAAGCCTCTAT-CCCCGGTTCGATTCCGGGTGCCACCT---
tdbD4254|Chlorobium_tepidum_TLS|194439|Cys|GCA                                      GGTGAAGTGGCCGAGT-GGC--TAGGCAGAGGTCTGCAAAACCTCGTA-CAGCGGTTCGAATCCGCTCTTCACCTCCA
tdbD4185|Clostridium_acetobutylicum_ATCC_824|272562|Cys|GCA                         GGCGCTATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CCCCAGTTCAAATCTGGGTGGCGCCTCCA
tdbD4181|Clostridium_perfringens_str._13|195102|Cys|GCA                             GGCGCTATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTATTCCCCGGTTCAAATCCGGGTGGCGCCTCCA
tdbD4285|Clostridium_tetani_E88|212717|Cys|GCA                                      GGCGCTATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTCTATTCCCCGGTTCAAATCCGGGTGGCGCCTCCA
tdbD4313|Corynebacterium_diphtheriae_NCTC_13129|257309|Cys|GCA                      GGTGGAATGGCCGAGT-GGT--GAGGCAACGGTCTGCAAAACCGTGCA-CACGGGTTCGATTCCCGTTTCCACCT---
tdbD4275|Corynebacterium_efficiens_YS-314|196164|Cys|GCA                            GGTGGAATGGCCGAGT-GGT--GAGGCAACGGTCTGCAAAACCGTGCA-CACGGGTTCGATTCCCGTTTCCACCT---
tdbD4261|Corynebacterium_glutamicum_ATCC_13032|196627|Cys|GCA                       GGTGGAATGGCCGAGT-GGT--GAGGCAACGGTCTGCAAAACCGTGCA-CACGGGTTCGATTCCCGTTTCCACCT---
tdbD4297|Coxiella_burnetii_RSA_493|227377|Cys|GCA                                   GGCTGGGTGGCAGAGT-GGT--CATGCAGCGGCCTGCAAAGCCGCGTA-CGCCGGTTCGATTCCGGCCTCAGCCT---
tdbD4169|Deinococcus_radiodurans_R1|243230|Cys|GCA                                  GGCGCTGTAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTCCAC-CACCGGTTCGAGTCCGGTCAGCGCCTCCA
tdbD4333|Desulfovibrio_vulgaris_subsp._vulgaris_str._Hildenborough|882|Cys|GCA      GGCGGCGTAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTCCATTCTCCGGTTCAAATCCGGACGCCGCCTCCA
tdbD4287|Enterococcus_faecalis_V583|226185|Cys|GCA                                  GGCGGTATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTCAT-CACCGGTTCAAATCCGGTTACCGCCT---
tdbD4301|Escherichia_coli_CFT073|199310|Cys|GCA                                     GGCGCGTTAACAAAGC-GGT--TATGTAGCGGATTGCAAATCCGTCTA-GTCCGGTTCGACTCCGGAACGCGCCTCCA
tdbD4160|Escherichia_coli_K12|83333|Cys|GCA                                         GGCGCGTTAACAAAGC-GGT--TATGTAGCGGATTGCAAATCCGTCTA-GTCCGGTTCGACTCCGGAACGCGCCTCCA
tdbD4161|Escherichia_coli_O157:H7|83334|Cys|GCA                                     GGCGCGTTAACAAAGC-GGT--TATGTAGCGGATTGCAAATCCGTCTA-GTCCGGTTCGACTCCGGAACGCGCCTCCA
tdbD4162|Escherichia_coli_O157:H7_EDL933|155864|Cys|GCA                             GGCGCGTTAACAAAGC-GGT--TATGTAGCGGATTGCAAATCCGTCTA-GTCCGGTTCGACTCCGGAACGCGCCTCCA
tdbD4255|Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586|190304|Cys|GCA         GGCGACGTCGCCAAGC-GGT--AAGGCAGAGGTCTGCAAAATCTCCAT-CACCAGTTCGAATCTGGTCGTCGCCTCCA
tdbD4322|Geobacter_sulfurreducens_PCA|243231|Cys|GCA                                GGCGGCGTCGCCAAGT-GGT--AAGGCAAAGGTCTGCAAAACCTTTATTCACCGGTTCAAATCCGGTCGCCGCCTCCA
tdbD4165|Haemophilus_influenzae_Rd_KW20|71421|Cys|GCA                               GGCGTGTTAGCAAAGC-GGT--TATGCACTGGATTGCAAATCCATGTA-GCTCGGTTCGACTCCGGGACACGCCTCCA
tdbD4163|Helicobacter_pylori_26695|85962|Cys|GCA                                    GGCGACATAGCCAAGT-GGT--AAGGCATGGGTCTGCAAAACCTTGATTCCCCGGTTCGAATCCGGGTGTCGCCTCCA
tdbD4164|Helicobacter_pylori_J99|85963|Cys|GCA                                      GGCGACATAGCCAAGT-GGT--AAGGCATGAGTCTGCAAAACTTTGATCCCCCGGTTCGAATCCGGGTGTCGCCTCCA
tdbD4323|Lactobacillus_johnsonii_NCC_533|257314|Cys|GCA                             GGCGGTGTAGCCAAGT-GGT--AAGGCACGGGTCTGCAAAACCCTAAT-CATCGGTTCAAATCCGATCACCGCCT---
tdbD4289|Lactobacillus_plantarum_WCFS1|220668|Cys|GCA                               GGCGGTATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTCAT-CACCGGTTCAAATCCGGTTACCGCCT---
tdbD4324|Leifsonia_xyli_subsp._xyli_str._CTCB07|281090|Cys|GCA                      GGTGGATTGGCCGAGA-GGC--GAGGCAGCGGCCTGCAAAGCCGTATA-CACGGGTTCGAATCCCGTATCCACCT---
tdbD4276|Leptospira_interrogans_serovar_Lai_str._56601|189518|Cys|GCA               GGCGTCGTGGCCAAGT-GGT--AAGGCATGGCTCTGCAAAAGCTTGAT-CCCCGGTTCGAATCCGGGCGACGCCT---
tdbD4179|Listeria_innocua_Clip11262|272626|Cys|GCA                                  GGCGCCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CACCGGTTCAAATCCGGTTGGCGCCTCCA
tdbD4180|Listeria_monocytogenes_EGD-e|169963|Cys|GCA                                GGCGCCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CACCGGTTCAAATCCGGTTGGCGCCTCCA
tdbD4334|Listeria_monocytogenes_str._4b_F2365|265669|Cys|GCA                        GGCGCCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CACCGGTTCAAATCCGGTTGGCGCCTCCA
tdbD4335|Mesoplasma_florum_L1|265311|Cys|GCA                                        GGCGGCATAGCCAAGT-GGCT-AAGGCATGGGTCTGCAACACCCTGAT-CATCGGTTCGAATCCGATTGCCGCCTCCA
tdbD4188|Mesorhizobium_loti_MAFF303099|266835|Cys|GCA                               GGCCTCGTGGCGGAGT-GGT--TACGCAGAGGACTGCAAATCCTTGCA-CCCCGGTTCGATTCCGGGCGAGGCCTCCA
tdbD4295|Mycobacterium_bovis_AF2122/97|233413|Cys|GCA                               GGTGGAGTGGCCGAGT-GGT--GAGGCAACGGCCTGCAAAGCCGTGCA-CACGGGTTCGATTCCCGTCTCCACCTCCA
tdbD4157|Mycobacterium_leprae_TN|272631|Cys|GCA                                     GGTGGAGTGGCCGAGT-GGT--GAGGCAACGGCCTGCAAAGCCGTGCA-CACGGGTTCGATTCCCGTCTCCACCT---
tdbD4151|Mycobacterium_tuberculosis_CDC1551|83331|Cys|GCA                           GGTGGAGTGGCCGAGT-GGT--GAGGCAACGGCCTGCAAAGCCGTGCA-CACGGGTTCGATTCCCGTCTCCACCTCCA
tdbD4315|Mycobacterium_tuberculosis_H37Rv|83332|Cys|GCA                             GGTGGAGTGGCCGAGT-GGT--GAGGCAACGGCCTGCAAAGCCGTGCA-CACGGGTTCGATTCCCGTCTCCACCTCCA
tdbD248|Mycoplasma_capricolum|2095|Cys|GCA                                          GGCAACATGGCCAAGC-GGCT-AAGGCATGGGTCTGCAACACCCTGAT-CATCGGTTCGAATCCGATTGTTGCCTCCA
tdbD4294|Mycoplasma_gallisepticum_R|233150|Cys|GCA                                  GGTGCCTTAGTCAAGT-GGT--AAGGCTTGGAGCTGCAACCTCCACAT-CGTCAGTTCGATTCTGACAGGCACCTCCA
tdbD4170|Mycoplasma_genitalium_G37|243273|Cys|GCA                                   GGTGCCTTAGCCAAGTGGACTCAAGGCCTGGAGCTGCAACCTCCATAT-CGTCAGTTCGAATCTGACAGGCACCTCCA
tdbD4171|Mycoplasma_pneumoniae_M129|272634|Cys|GCA                                  GGTGCCTTAGCCAAGTGGATTCAAGGCCTGGAGCTGCAACCTCCATAT-CGTCAGTTCGAATCTGACAGGCACCTCCA
tdbD4194|Mycoplasma_pulmonis_UAB_CTIP|272635|Cys|GCA                                GGCACCATAGCCAAAT-GGGC-AAGGCATGGGTCTGCAACACCCTGAT-TACCGGTTCGAGTCCGGTTGGTGCCTCCA
tdbD4152|Neisseria_meningitidis_MC58|122586|Cys|GCA                                 GGCGAGATAGCAAAGT-GGT--TATGCAGCGGATTGCAAATCCGTCTA-CGCCGGTTCGATTCCGACTCTCGCCTCCA
tdbD4153|Neisseria_meningitidis_Z2491|122587|Cys|GCA                                GGCGAGATAGCAAAGT-GGT--TATGCAGCGGATTGCAAATCCGTCTA-CGCCGGTTCGATTCCGACTCTCGCCTCCA
tdbD4307|Nitrosomonas_europaea_ATCC_19718|228410|Cys|GCA                            GGCGGGGTGGCAGAGT-GGT--TATGCAGCGGCCTGCAAAGCCGTCTA-CGCCGGTTCGATTCCGACCCCCGCCTCCA
tdbD4193|Nostoc_sp._PCC_7120|103690|Cys|GCA                                         GGCGGCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTCCATCCCCCGGTTCAAATCCGGGTGCCGCCT---
tdbD4277|Oceanobacillus_iheyensis_HTE831|221109|Cys|GCA                             GGCGGTATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CACCGGTTCAAATCCGGTTACCGCCTCCA
tdbD4314|Onion_yellows_phytoplasma_OY-M|262768|Cys|GCA                              GGCCCTGTAGCCAAGT-GGT--AAGGCATGGCTCTGCAAAAGCTTGAT-CAACGGTTCAAATCCGTTCAGGGCCTCCA
tdbD4172|Pasteurella_multocida_subsp._multocida_str._Pm70|272843|Cys|GCA            GGCGTGTTAGCAAAGC-GGT--TATGCACTGGATTGCAAATCCATGTA-GCTCGGTTCGACTCCGGGACACGCCTCCA
tdbD4317|Photorhabdus_luminescens_subsp._laumondii_TTO1|243265|Cys|GCA              GGCGCGTTGGCAGAGT-GGC--CATGCAGCGGATTGCAAATCCGTCAA-CCTCGGTTCGACTCCGGGACGCGCCTCCA
tdbD4325|Porphyromonas_gingivalis_W83|242619|Cys|GCA                                GGTTCGTTGGCCGAGT-GGT--TAGGCAACGGTCTGCAAAACCGTCTA-CGGCGGTTCGAGTCCGCCACGAACCT---
tdbD4336|Propionibacterium_acnes_KPA171202|267747|Cys|GCA                           GGTGGAGTGGCCGAGA-GGC--GAGGCAACGGACTGCAAATCCGTGTA-CACGGGTTCAAATCCCGTCTCCACCT---
tdbD4174|Pseudomonas_aeruginosa_PAO1|208964|Cys|GCA                                 GGCTGAGTAGCAGAGT-GGT--TATGCACCGGATTGCAAATCCGTGAA-CGCCGGTTCGATTCCGACCTCAGCCTCCA
tdbD4309|Pseudomonas_syringae_pv._tomato_str._DC3000|223283|Cys|GCA                 GGCCGAGTAGCAAAAT-GGT--TATGCAGCGGATTGCAAATCCGCCTA-CGCCGGTTCGATTCCGACCTCGGCCTCCA
tdbD4191|Ralstonia_solanacearum_GMI1000|267608|Cys|GCA                              GGCGGGGTGGCAGAGT-GGTC-AATGCTGCGGCTTGCAAAGCCGTATA-AGTCGGTTCGATTCCGTTCCCCCGCC---
tdbD4306|Rhodopirellula_baltica_SH_1|243090|Cys|GCA                                 GGCGACGTGGCCAAGT-GGCT-AAGGCGAAGGATTGCAAATCCTTTATTCGTGGGTTCGAATCCCACCGTCGCCT---
tdbD4318|Rhodopseudomonas_palustris_CGA009|258594|Cys|GCA                           GGCCACGTGGCGGAGT-GGT--TACGCAACGGTCTGCAAAACCGTGTA-CACCAGTTCAATTCTGGTCGTGGCCTCCA
tdbD4186|Rickettsia_conorii_str._Malish_7|272944|Cys|GCA                            GGCTGGGTAGCAAAGT-GGT--AATGCCGTGGACTGCAAATCCTCTATTCGTCGGTTCGATTCCGACCCTGGCCTCCA
tdbD4260|Rickettsia_prowazekii_str._Madrid_E|272947|Cys|GCA                         GGCTGGGTAGCAAAGT-GGT--AATGCCGTGGACTGCAAATCCTCTATTCGTCGGTTCGATTCCGACCCTGGCCTCCA
tdbD4326|Rickettsia_typhi_str._Wilmington|257363|Cys|GCA                            GGCTGGGTAGCAAAGT-GGT--AATGCCGTGGACTGCAAATCCTCTATTCGTCGGTTCGATTCCGACCCTGGCCTCCA
tdbD4196|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18|220341|Cys|GCA GGCGCGTTAACAAAGC-GGT--TATGTAGCGGATTGCAAATCCGTCTA-GTCCGGTTCGACTCCGGAACGCGCCTCCA
tdbD4304|Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2|209261|Cys|GCA  GGCGCGTTAACAAAGC-GGT--TATGTAGCGGATTGCAAATCCGTCTA-GTCCGGTTCGACTCCGGAACGCGCCTCCA
tdbD4190|Salmonella_typhimurium_LT2|99287|Cys|GCA                                   GGCGCGTTAACAAAGC-GGT--TATGTAGCGGATTGCAAATCCGTCTA-GTCCGGTTCGACTCCGGAACGCGCCTCCA
tdbD4279|Shewanella_oneidensis_MR-1|211586|Cys|GCA                                  GGCGCGATGGCAGAAT-GGC--TATGCTGCGGATTGCAAATCCGTCGA-TCTCGGTTCGACTCCGGGTCGCGCCTCCA
tdbD4280|Shigella_flexneri_2a_str._301|198214|Cys|GCA                               GGCGCGTTAACAAAGC-GGT--TATGTAGCGGATTGCAAATCCGTCTA-GTCCGGTTCGACTCCGGAACGCGCCTCCA
tdbD4197|Sinorhizobium_meliloti_1021|266834|Cys|GCA                                 GGCCTCGTGGCGGAGT-GGT--GACGCAGAGGACTGCAAATCCTTGTA-CGCCGGTTCAATTCCGGCCGAGGCCTCCA
tdbD252|Spiroplasma_melliferum|2134|Cys|GCA                                         GGCACTATAGCCAAGGTGGCT-AAGGCATGGGACTGCAACTCCCCGAT-CGTCGGTTCGAATCCGACTAGTGCCTCCA
tdbD4319|Staphylococcus_aureus_subsp._aureus_MRSA252|282458|Cys|GCA                 GGCGGCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CACCGGTTCAAATCCGGTTGCCGCCTCCA
tdbD4262|Staphylococcus_aureus_subsp._aureus_MW2|196620|Cys|GCA                     GGCGGCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CACCGGTTCAAATCCGGTTGCCGCCTCCA
tdbD4156|Staphylococcus_aureus_subsp._aureus_N315|158879|Cys|GCA                    GGCGGCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CACCGGTTCAAATCCGGTTGCCGCCTCCA
tdbD4290|Staphylococcus_epidermidis_ATCC_12228|176280|Cys|GCA                       GGCGGCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTAT-CACCGGTTCAAATCCGGTTGCCGCCTCCA
tdbD4281|Streptococcus_agalactiae_2603V/R|208435|Cys|GCA                            GGCGGTATAGCCAAGT-GGT--AAGGCACGGCTCTGCAAAAGCTTGAT-CGTCGGTTCAAATCCGTCTACCGCCT---
tdbD4263|Streptococcus_agalactiae_NEM316|211110|Cys|GCA                             GGCGGTATAGCCAAGT-GGT--AAGGCACGGCTCTGCAAAAGCTTGAT-CGTCGGTTCAAATCCGTCTACCGCCT---
tdbD4282|Streptococcus_mutans_UA159|210007|Cys|GCA                                  GGCGGTATAGCCAAGT-GGT--AAGGCACGGCTCTGCAAAAGCTTGAT-CGTCGGTTCAAATCCGTCTACCGCCT---
tdbD4184|Streptococcus_pneumoniae_TIGR4|170187|Cys|GCA                              GGCGGTATAGCCAAGT-GGT--AAGGCACGGCTCTGCAAAAGCTTGAT-CGTCGGTTCAAATCCGTCTACCGCCT---
tdbD4183|Streptococcus_pyogenes_M1_GAS|160490|Cys|GCA                               GGCGGTATAGCCAAGT-GGT--AAGGCACGGCTCTGCAAAAGCTTGAT-CGTCGGTTCAAATCCGTCTACCGCCT---
tdbD4264|Streptococcus_pyogenes_MGAS315|198466|Cys|GCA                              GGCGGTATAGCCAAGT-GGT--AAGGCACGGCTCTGCAAAAGCTTGAT-CGTCGGTTCAAATCCGTCTACCGCCT---
tdbD4296|Streptococcus_pyogenes_SSI-1|193567|Cys|GCA                                GGCGGTATAGCCAAGT-GGT--AAGGCACGGCTCTGCAAAAGCTTGAT-CGTCGGTTCAAATCCGTCTACCGCCT---
tdbD4302|Streptomyces_avermitilis_MA-4680|227882|Cys|GCA                            GGCCGTGTGCCCGAGT-GGCT-TAGGGACTCGCCTGCAAAGCGAGGTA-CGTGGGTTCAATTCCCGCCACGGCCT---
tdbD4278|Streptomyces_coelicolor_A3(2)|100226|Cys|GCA                               GGTGGAGTGGCCGAGA-GGC--GAGGCAACGGCCTGCAAAGCCGTCTA-CACGGGTTCAAATCCCGTCTCCACCTCCA
tdbD254|Streptomyces_lividans|1916|Cys|GCA                                          GGTGGAGTGGCCGAGA-GGC--GAGGCAACGGCCTGCAAAGCCGTCTA-CACGGGTTCAAATCCCGTCTCCACCTCCA
tdbD4328|Symbiobacterium_thermophilum_IAM_14863|292459|Cys|GCA                      GGTGGGTTGGCGAAGT-GGT--AACGCGGCGGTCTGCAAAACCGTTATCCGTGGGTTCAAATCCCACACCCACCTCCA
tdbD4175|Synechocystis_sp._PCC_6803|1148|Cys|GCA                                    GGCGGCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAATCTTTAC-CCCCAGTTCGAATCTGGGTGCCGCCT---
tdbD4267|Thermoanaerobacter_tengcongensis_MB4|273068|Cys|GCA                        GGCGACATAGCCAAGC-GGT--AAGGCAGGGGTCTGCAAAACCCCGATTCCCCGGTTCGAATCCGGGTGTCGCCTCCA
tdbD4265|Thermosynechococcus_elongatus_BP-1|197221|Cys|GCA                          GGCGGCATAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTTTATTCCCCGGTTCGAATCCGGGTGCCGCCT---
tdbD4176|Thermotoga_maritima_MSB8|243274|Cys|GCA                                    GGCGGCGTAGCCAAGC-GGTCAAAGGCGGGGGTCTGCAAAATCCCTATTCGTGGGTTCGAATCCCACCGCCGCCTCCA
tdbD4337|Thermus_thermophilus_HB27|262724|Cys|GCA                                   GGCGCCGTAGCCAAGT-GGT--AAGGCAGAGGTCTGCAAAACCTCCATTCGCCGGTTCGAATCCGGCCGGCGCCTCCA
tdbD4338|Treponema_denticola_ATCC_35405|243275|Cys|GCA                              GGCGCCGTACCCAAGT-GGT--AAGGGACAGGTCTGCAAAACCTTCATTCATCAGTTCGATTCTGATCGGCGCCT---
tdbD4173|Treponema_pallidum_subsp._pallidum_str._Nichols|243276|Cys|GCA             GGCGCCGTGCCCAAGT-GGT--AAGGGAGAGGTCTGCAAAACCTTTATGCATCAGTTCGATTCTGATCGGCGCCT---
tdbD4291|Tropheryma_whipplei_str._Twist|203267|Cys|GCA                              GGTGGCGTGGCCGAGA-GGT--GAGGCAGCAGCCTGCAAAGCTGTGTA-CACGGGTTCGAATCCCGTCGCCACCT---
tdbD4292|Tropheryma_whipplei_TW08/27|218496|Cys|GCA                                 GGTGGCGTGGCCGAGA-GGT--GAGGCAGCAGCCTGCAAAGCTGTGTA-CACGGGTTCGAATCCCGTCGCCACCT---
tdbD4158|Ureaplasma_parvum_serovar_3|38504|Cys|GCA                                  GGTGCCATAGCCAAGT-GGT--AAGGTCAGGAGCTGCAACCTCCTTATTCGTCAGTTCGAATCTGACTGGCACCTCCA
tdbD4155|Vibrio_cholerae_O1_biovar_El_Tor_str._N16961|243277|Cys|GCA                GGCGCGTTGGCAGAGT-GGC--CATGCAGCGGATTGCAAATCCGTGGA-CCTCGGTTCGACTCCGGGACGCGCCTCCA
tdbD4339|Wolbachia_endosymbiont_of_Drosophila_melanogaster|163164|Cys|GCA           GGCTGGGTGGCAGAAT-GGCT-TATGCGGAGGACTGCAAATCCTTTTA-TACCGGTTCAATTCCGGTCCCGGCCT---
tdbD4269|Xanthomonas_axonopodis_pv._citri_str._306|190486|Cys|GCA                   GGCCTGGTGGTAGAGT-GGT--TATGCAGCGGACTGCAAATCCGCGTA-CGCCGGTTCAATTCCGGCCCAGGCCTCCA
tdbD4268|Xanthomonas_campestris_pv._campestris_str._ATCC_33913|190485|Cys|GCA       GGCCTGGTGGTAGAGT-GGT--TATGCAGCGGACTGCAAATCCGCGTA-CGCCGGTTCAATTCCGGCCCAGGCCTCCA
tdbD4177|Xylella_fastidiosa_9a5c|160492|Cys|GCA                                     GGCCTGGTGGCAGAGT-GGT--CATGCAGCGGATTGCAAATCCGTGTA-CGCCGGTTCGATTCCGACCCAGGCCTCCA
tdbD4293|Xylella_fastidiosa_Temecula1|183190|Cys|GCA                                GGCCTGGTGGCAGAAT-GGT--CATGCAGCGGATTGCAAATCCGTGTA-CGCCGGTTCGATTCCGACCCAGGCCTCCA
tdbD4329|Yersinia_pestis_biovar_Microtus_str._91001|229193|Cys|GCA                  GGCGCGTTGGCAGAGT-GGC--CATGCTACGGATTGCAAATCCGTCTA-CCTCGGTTCGACTCCGGGACGCGCCTCCA
tdbD4189|Yersinia_pestis_CO92|214092|Cys|GCA                                        GGCGCGTTGGCAGAGT-GGC--CATGCTACGGATTGCAAATCCGTCTA-CCTCGGTTCGACTCCGGGACGCGCCTCCA
tdbD4271|Yersinia_pestis_KIM|187410|Cys|GCA                                         GGCGCGTTGGCAGAGT-GGC--CATGCTACGGATTGCAAATCCGTCTA-CCTCGGTTCGACTCCGGGACGCGCCTCCA
tdbD4330|Yersinia_pseudotuberculosis_IP_32953|273123|Cys|GCA                        GGCGCGTTGGCAGAGT-GGC--CATGCTACGGATTGCAAATCCGTCTA-CCTCGGTTCGACTCCGGGACGCGCCTCCA
#=GC SS_cons                                                                        (((((((..((((..........)))).(((((.......))))).....(((((.......))))))))))))....
#=GC SN                                                                             0000000..1111..........1111.22222.......22222.....33333.......333330000000....

#=GF CS                                                                             78 columns, 21 paired, 19 covariant; 4 stems
//