Index

Locus ID	Seq. ID	Location	Custom annotation	Window ID	Location	Strand	N	Length	Mean pairwise ID	z	SCI	P
2	dm3.chr2LHet	56,175 – 56,286	- - - - - - - -	2	56,175 – 56,228	-	5	55	71.35	-1.22	0.68	0.924536
4	dm3.chr2LHet	121,787 – 121,907	- - - - - - - -	5	121,787 – 121,907	+	4	120	61.94	-1.73	0.61	0.996050
4	dm3.chr2LHet	121,787 – 121,907	- - - - - - - -	6	121,787 – 121,907	-	4	120	61.94	-1.10	0.74	0.986738
5	dm3.chr2LHet	181,214 – 181,304	- - - - - - - -	7	181,214 – 181,304	+	4	102	65.29	-1.88	0.50	0.980030
5	dm3.chr2LHet	181,214 – 181,304	- - - - - - - -	8	181,214 – 181,304	-	4	102	65.29	-1.86	0.54	0.987914
6	dm3.chr2LHet	258,180 – 258,250	- - - - - - - -	9	258,180 – 258,250	+	5	70	58.35	-2.24	0.59	0.999720
8	dm3.chr2LHet	311,360 – 311,412	- - - - - - - -	13	311,360 – 311,412	+	6	56	53.38	-1.22	0.59	0.998114
12	dm3.chr2L	19,501 – 19,654	- - - - - - - -	18	19,501 – 19,654	+	5	159	67.33	-2.11	0.51	0.992602
13	dm3.chr2L	24,690 – 24,741	- - - intron="intron;ID=intron_FBgn0031209:5_FBgn0031209:4;Name=Ir21a-in;Parent=FBtr0113008;parent_type=mRNA" - - - -	19	24,690 – 24,741	-	3	51	97.39	-1.34	1.02	0.911107
14	dm3.chr2L	41,296 – 41,468	- - - intron="intron;ID=intron_FBgn0051973:15_FBgn0051973:14;Name=Cda5-in;Parent=FBtr0078163,FBtr0078164,FBtr0113415,FBtr0113416;parent_type=mRNA" - - - -	20	41,296 – 41,403	+	8	119	70.13	-1.79	0.46	0.923059
14	dm3.chr2L	41,296 – 41,468		22	41,332 – 41,443	-	8	120	85.67	-2.13	0.80	0.951734
18	dm3.chr2L	73,228 – 73,397	- - - intron="intron;ID=intron_FBgn0031213:1_FBgn0031213:4;Name=galectin-in;Parent=FBtr0078101;parent_type=mRNA" - - - -	30	73,228 – 73,334	-	5	116	64.74	-2.97	0.35	0.995075
19	dm3.chr2L	92,599 – 92,691	- - - - - - - -	33	92,599 – 92,691	-	9	106	76.60	-2.99	0.37	0.959955
21	dm3.chr2L	135,480 – 135,598	- - - - - - - -	35	135,480 – 135,598	-	9	119	66.94	-1.69	0.53	0.995518
22	dm3.chr2L	136,632 – 136,733	- - - - - - - -	36	136,632 – 136,733	+	5	101	65.18	-1.81	0.55	0.974761
24	dm3.chr2L	146,099 – 146,196	- - - intron="intron;ID=intron_FBgn0259818:2_FBgn0259818:1;Name=CG42399-in;Parent=FBtr0301929;parent_type=mRNA" - - - -	38	146,099 – 146,196	-	7	114	71.58	-1.97	0.50	0.924264
25	dm3.chr2L	175,350 – 175,453	- - CDS="CDS;ID=CDS_FBgn0016977:4_872;Name=spen-cds;Parent=FBtr0306341;parent_type=mRNA" - - - - -	39	175,350 – 175,446	+	12	108	72.39	-1.40	0.53	0.918272
				40	175,350 – 175,446	-	12	108	72.39	-1.75	0.53	0.975215
				41	175,360 – 175,453	+	12	105	71.97	-1.47	0.56	0.960354
				42	175,360 – 175,453	-	12	105	71.97	-2.05	0.55	0.993772
26	dm3.chr2L	178,464 – 178,571	- - - intron="intron;ID=intron_FBgn0016977:4_FBgn0016977:6;Name=spen-in;Parent=FBtr0306341;parent_type=mRNA" - - - -	43	178,464 – 178,571	+	3	109	87.77	-3.30	0.74	0.988643
28	dm3.chr2L	224,212 – 224,311	- - - - - - - -	45	224,212 – 224,311	+	5	107	86.34	-2.42	0.79	0.967041
33	dm3.chr2L	243,033 – 243,125	FBnoncoding="pre_miRNA;ID=FBtr0304343;Name=mir-965-RM;Parent=FBgn0262252;Alias=CR42959-RM;Dbxref=FlyBase_Annotation_IDs:CR42959-RM,miRBase:MI0005821" - - intron="intron;ID=intron_FBgn0086902:20_FBgn0086902:19;Name=kis-in;Parent=FBtr0078144,FBtr0299837;parent_type=mRNA" - - - "mirBase_v16=dme-mir-965\|3.6e-47"	52	243,033 – 243,125	+	13	94	78.90	-1.99	0.70	0.990483
33	dm3.chr2L	243,033 – 243,125		53	243,033 – 243,125	-	13	94	78.90	-3.85	0.78	0.999712
34	dm3.chr2L	249,542 – 249,639	- - - intron="intron;ID=intron_FBgn0086902:20_FBgn0086902:19;Name=kis-in;Parent=FBtr0078144,FBtr0299837;parent_type=mRNA" - - - -	54	249,542 – 249,639	+	5	97	80.31	-2.51	0.65	0.975205
37	dm3.chr2L	286,649 – 286,753	- - - - - - - -	59	286,649 – 286,753	-	7	105	72.71	-1.65	0.55	0.971532
44	dm3.chr2L	340,754 – 340,851	- - CDS="CDS;ID=CDS_CG4574:11_747;Name=Plc21C-cds;Parent=FBtr0078049,FBtr0078050,FBtr0078051,FBtr0078047,FBtr0078048;parent_type=mRNA" - - - - -	66	340,754 – 340,851	+	5	97	91.65	-2.28	0.85	0.940148
45	dm3.chr2L	346,367 – 346,441	- - - - - - - -	67	346,367 – 346,441	+	6	78	71.58	-1.54	0.62	0.964656
47	dm3.chr2L	386,100 – 386,232	- - - intron="intron;ID=intron_CG3935:3_CG3935:4;Name=al-in;Parent=FBtr0078053;parent_type=mRNA" - - - -	69	386,100 – 386,203	+	12	117	77.18	-2.47	0.54	0.987443
				70	386,100 – 386,203	-	12	117	77.18	-2.39	0.44	0.929803
				71	386,128 – 386,232	+	12	120	70.72	-2.66	0.54	0.999196
				72	386,128 – 386,232	-	12	120	70.72	-2.44	0.47	0.996358
48	dm3.chr2L	388,424 – 388,515	- - - - - - - -	73	388,424 – 388,515	-	12	107	77.23	-1.82	0.61	0.963965
50	dm3.chr2L	392,474 – 392,572	- - - - - - - -	76	392,474 – 392,572	+	5	98	96.22	-3.16	0.95	0.995910
51	dm3.chr2L	426,999 – 427,096	- - - - - - - -	77	426,999 – 427,096	-	6	104	80.22	-3.24	0.55	0.993290
52	dm3.chr2L	430,709 – 430,817	- - - - - - - -	78	430,709 – 430,817	-	5	120	82.15	-2.10	0.72	0.925445
54	dm3.chr2L	433,965 – 434,076	- - - intron="intron;ID=intron_FBgn0004583:1_FBgn0004583:2;Name=ex-in;Parent=FBtr0078059;parent_type=mRNA" - - - -	80	433,965 – 434,055	+	6	92	93.31	-1.93	0.93	0.942183
				81	433,965 – 434,055	-	6	92	93.31	-2.24	0.91	0.965623
				82	433,981 – 434,076	+	4	95	97.89	-2.07	0.96	0.952107
				83	433,981 – 434,076	-	4	95	97.89	-2.04	0.95	0.939856
60	dm3.chr2L	454,740 – 454,800	- - - - - - - -	89	454,740 – 454,800	+	5	60	68.83	-1.90	0.50	0.975872
64	dm3.chr2L	493,246 – 493,304	- - - - - - - -	95	493,246 – 493,304	+	5	58	100.00	-1.75	1.00	0.939583
64	dm3.chr2L	493,246 – 493,304	- - - - - - - -	96	493,246 – 493,304	-	5	58	100.00	-1.98	1.00	0.964637
66	dm3.chr2L	495,956 – 496,074	- - - - - - - -	99	495,956 – 496,049	+	6	95	81.37	-3.56	0.71	0.998881
66	dm3.chr2L	495,956 – 496,074	- - - - - - - -	100	495,975 – 496,074	+	6	99	82.20	-1.91	0.79	0.953422
67	dm3.chr2L	518,190 – 518,283	- - - - - - - -	101	518,190 – 518,283	+	8	110	71.47	-3.31	0.27	0.965641
68	dm3.chr2L	519,304 – 519,396	- - - - - - - -	102	519,304 – 519,396	-	12	114	78.15	-2.10	0.66	0.985596
71	dm3.chr2L	541,402 – 541,546	- - - - - - - -	105	541,402 – 541,520	+	5	120	89.52	-2.55	0.78	0.953793
				106	541,402 – 541,520	-	5	120	89.52	-3.05	0.74	0.982474
				108	541,428 – 541,546	-	5	120	87.15	-2.31	0.85	0.974116
78	dm3.chr2L	597,251 – 597,365	- - - - - - - -	116	597,251 – 597,342	-	7	112	76.53	-3.04	0.40	0.963710
78	dm3.chr2L	597,251 – 597,365	- - - - - - - -	117	597,275 – 597,365	-	6	93	81.03	-1.95	0.83	0.978022
83	dm3.chr2L	613,505 – 613,599	- - - - - - - -	122	613,505 – 613,599	+	5	94	88.21	-2.74	0.74	0.967495
86	dm3.chr2L	624,369 – 624,473	- - - - - - - -	125	624,369 – 624,473	-	5	104	89.42	-2.65	0.73	0.945026
87	dm3.chr2L	630,016 – 630,160	- - - - - - - -	127	630,045 – 630,160	+	6	115	86.03	-2.56	0.73	0.974208
90	dm3.chr2L	650,423 – 650,524	- - - intron="intron;ID=intron_CG17941:6_CG17941:7;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	133	650,423 – 650,524	-	11	120	90.46	-2.88	0.83	0.989556
91	dm3.chr2L	653,970 – 654,075	- - - intron="intron;ID=intron_CG17941:5_CG17941:6;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	134	653,970 – 654,075	+	3	125	74.86	-3.07	0.53	0.983899
93	dm3.chr2L	658,537 – 658,639	- - - intron="intron;ID=intron_CG17941:2_CG17941:3;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	136	658,537 – 658,639	+	6	103	77.19	-1.58	0.73	0.949445
93	dm3.chr2L	658,537 – 658,639		137	658,537 – 658,639	-	6	103	77.19	-2.30	0.74	0.994421
94	dm3.chr2L	660,764 – 660,822	- - - intron="intron;ID=intron_CG17941:2_CG17941:3;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	138	660,764 – 660,822	-	3	61	88.89	-3.04	0.94	0.996639
95	dm3.chr2L	672,772 – 672,826	- - - intron="intron;ID=intron_CG17941:2_CG17941:3;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	139	672,772 – 672,826	+	5	56	75.05	-1.50	0.79	0.960341
96	dm3.chr2L	673,608 – 673,666	- - - intron="intron;ID=intron_CG17941:2_CG17941:3;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	142	673,608 – 673,666	-	4	58	97.13	-2.46	0.97	0.985712
98	dm3.chr2L	675,318 – 675,418	- - - intron="intron;ID=intron_CG17941:2_CG17941:3;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	144	675,318 – 675,418	-	5	100	96.60	-1.93	0.98	0.961693
102	dm3.chr2L	734,357 – 734,439	- - - - - - - -	149	734,357 – 734,439	-	5	83	67.68	-1.69	0.53	0.975206
109	dm3.chr2L	775,441 – 775,557	- - - - - - - -	156	775,441 – 775,557	+	5	119	88.10	-2.45	0.84	0.975751
111	dm3.chr2L	780,059 – 780,127	- - - - - - - -	159	780,059 – 780,127	-	5	68	73.09	-1.14	0.76	0.923779
113	dm3.chr2L	790,237 – 790,359	- - - intron="intron;ID=intron_CG3324:1_CG3324:2;Name=Pkg21D-in;Parent=FBtr0078042;parent_type=mRNA" - - - -	162	790,255 – 790,359	-	7	118	74.65	-1.31	0.73	0.917607
116	dm3.chr2L	799,880 – 800,023	- - - - - - - -	166	799,880 – 799,983	-	4	114	80.80	-2.06	0.72	0.904471
116	dm3.chr2L	799,880 – 800,023	- - - - - - - -	168	799,909 – 800,023	-	4	114	82.60	-2.12	0.82	0.965697
121	dm3.chr2L	819,689 – 819,753	- - - - - - - -	174	819,689 – 819,753	-	6	64	69.27	-1.43	0.51	0.940717
123	dm3.chr2L	841,207 – 841,299	- - - intron="intron;ID=intron_FBgn0020304:8_FBgn0020304:7;Name=drongo-in;Parent=FBtr0078037,FBtr0302121;parent_type=mRNA" - - - -	177	841,207 – 841,299	+	3	110	80.73	-2.33	0.72	0.936409
128	dm3.chr2L	857,550 – 857,651	FBnoncoding="pre_miRNA;ID=FBtr0304182;Name=mir-375-RM;Parent=FBgn0262177;Alias=CR42884-RM;Dbxref=FlyBase_Annotation_IDs:CR42884-RM,miRBase:MI0005813" - - - - - - "mirBase_v16=dsi-mir-375\|4.2e-50"	184	857,550 – 857,651	+	13	119	77.38	-2.01	0.73	0.992252
129	dm3.chr2L	876,655 – 876,790	- - - - - - - -	185	876,655 – 876,790	+	12	164	79.73	-2.44	0.56	0.959578
131	dm3.chr2L	889,491 – 889,592	- - - - - - - -	188	889,491 – 889,592	+	12	118	77.28	-1.55	0.74	0.958487
133	dm3.chr2L	901,461 – 901,549	- - - - "Rfam_10.0=RF00003;U1;AY187768.1/1130-1294\|2.2e-26" "Noncode_2.0=n5572_u344_X53544_snRNA_Drosophila\|2.2e-26" "unique_Noncode_2.0=u3858_snRNA_Drosophila\|1.9e-26" -	190	901,461 – 901,549	+	10	92	82.78	-1.62	0.87	0.967660
134	dm3.chr2L	902,180 – 902,276	- - - - - - - -	191	902,180 – 902,276	-	6	96	92.01	-2.06	0.86	0.913419
135	dm3.chr2L	906,015 – 906,107	- - - - - - - -	192	906,015 – 906,107	+	9	93	76.25	-1.96	0.55	0.968045
135	dm3.chr2L	906,015 – 906,107	- - - - - - - -	193	906,015 – 906,107	-	9	93	76.25	-3.26	0.55	0.999307
136	dm3.chr2L	907,553 – 907,651	- - - - - - - -	194	907,553 – 907,651	+	6	104	69.74	-1.38	0.56	0.940601
139	dm3.chr2L	947,004 – 947,104	- - - intron="intron;ID=intron_FBgn0028481:2_FBgn0028481:3;Name=CG4341-in;Parent=FBtr0077949;parent_type=mRNA" - - - -	198	947,004 – 947,104	-	11	109	76.68	-1.54	0.68	0.971450
140	dm3.chr2L	962,114 – 962,221	- - - - - - - -	199	962,114 – 962,221	-	6	107	67.70	-1.73	0.45	0.960461
151	dm3.chr2L	1,046,062 – 1,046,251	- - - - - - - -	213	1,046,062 – 1,046,155	-	3	93	95.70	-1.53	0.99	0.913296
152	dm3.chr2L	1,047,047 – 1,047,105	- - - intron="intron;ID=intron_FBgn0031294:13_FBgn0031294:12;Name=IA-2-in;Parent=FBtr0301417;parent_type=mRNA" - - - -	216	1,047,047 – 1,047,105	+	5	62	89.26	-2.62	0.80	0.967634
155	dm3.chr2L	1,073,335 – 1,073,437	- - - intron="intron;ID=intron_CG4385:1_CG4385:2;Name=S-in;Parent=FBtr0077993;parent_type=mRNA" - - - -	219	1,073,335 – 1,073,437	-	6	105	79.18	-3.15	0.41	0.967428
162	dm3.chr2L	1,154,456 – 1,154,561	- - - intron="intron;ID=intron_CG33979:7_CG33979:8;Name=capt-in;Parent=FBtr0100023;parent_type=mRNA" - - - -	227	1,154,456 – 1,154,561	+	6	115	67.94	-2.48	0.38	0.983797
162	dm3.chr2L	1,154,456 – 1,154,561		228	1,154,456 – 1,154,561	-	6	115	67.94	-3.25	0.57	0.999828
163	dm3.chr2L	1,192,397 – 1,192,517	- - CDS="CDS;ID=CDS_CG5001:5_750;Name=CG5001-cds;Parent=FBtr0077972;parent_type=mRNA" - - - - -	229	1,192,397 – 1,192,517	-	15	120	78.58	-2.94	0.30	0.906065
166	dm3.chr2L	1,205,033 – 1,205,123	- - - - - - - -	232	1,205,033 – 1,205,123	+	6	100	72.37	-3.00	0.56	0.998499
167	dm3.chr2L	1,206,610 – 1,206,718	- - - - - - - -	233	1,206,610 – 1,206,718	+	10	117	64.44	-2.35	0.32	0.987646
171	dm3.chr2L	1,237,689 – 1,237,855	- - - - - - - -	238	1,237,689 – 1,237,792	-	8	109	90.94	-3.38	0.89	0.997435
				239	1,237,721 – 1,237,818	-	8	97	88.35	-2.63	0.75	0.973059
				241	1,237,755 – 1,237,855	-	7	100	73.83	-1.65	0.63	0.981923
174	dm3.chr2L	1,250,003 – 1,250,110	- - - - - - - -	244	1,250,003 – 1,250,110	+	9	120	79.53	-1.94	0.74	0.975224
174	dm3.chr2L	1,250,003 – 1,250,110	- - - - - - - -	245	1,250,003 – 1,250,110	-	9	120	79.53	-2.26	0.81	0.993225
183	dm3.chr2L	1,293,150 – 1,293,268	- - CDS="CDS;ID=CDS_FBgn0041097:12_857;Name=robo3-cds;Parent=FBtr0077921;parent_type=mRNA" - - - - -	257	1,293,150 – 1,293,268	+	11	118	75.39	-2.17	0.39	0.922046
185	dm3.chr2L	1,304,776 – 1,304,882	- - - - - - - -	260	1,304,776 – 1,304,882	-	6	107	87.81	-2.69	0.73	0.969934
192	dm3.chr2L	1,353,120 – 1,353,181	- - CDS="CDS;ID=CDS_FBgn0031333:1_754;Name=CG5561-cds;Parent=FBtr0077947;parent_type=mRNA" - - - - -	268	1,353,120 – 1,353,181	+	5	63	61.71	-2.45	0.58	0.999405
193	dm3.chr2L	1,366,974 – 1,367,096	- - - - - - - -	269	1,366,974 – 1,367,078	+	6	113	80.92	-1.39	0.85	0.907281
193	dm3.chr2L	1,366,974 – 1,367,096	- - - - - - - -	270	1,367,005 – 1,367,096	+	7	105	76.92	-1.50	0.81	0.963650
197	dm3.chr2L	1,395,202 – 1,395,289	- - - intron="intron;ID=intron_FBgn0002543:12_FBgn0002543:11;Name=lea-in;Parent=FBtr0077941;parent_type=mRNA" - - - -	274	1,395,202 – 1,395,289	-	9	95	76.42	-2.10	0.65	0.990679
198	dm3.chr2L	1,399,540 – 1,399,734	- - - intron="intron;ID=intron_FBgn0002543:14_FBgn0002543:13;Name=lea-in;Parent=FBtr0077941;parent_type=mRNA" - - - -	276	1,399,631 – 1,399,734	-	3	104	83.50	-2.37	0.74	0.929473
199	dm3.chr2L	1,405,819 – 1,405,941	- - - intron="intron;ID=intron_FBgn0002543:14_FBgn0002543:13;Name=lea-in;Parent=FBtr0077941;parent_type=mRNA" - - - -	279	1,405,829 – 1,405,941	-	6	114	55.61	-1.66	0.46	0.995545
204	dm3.chr2L	1,445,513 – 1,445,638	- - - - - - - -	285	1,445,531 – 1,445,638	-	9	114	58.49	-1.55	0.37	0.977585
210	dm3.chr2L	1,547,820 – 1,547,915	- - - - - - - -	291	1,547,820 – 1,547,915	+	7	99	80.29	-2.50	0.63	0.987643
211	dm3.chr2L	1,586,411 – 1,586,538	- - CDS="CDS;ID=CDS_FBgn0031347:1_773;Name=CG10869-cds;Parent=FBtr0077917;parent_type=mRNA" intron="intron;ID=intron_CG14351:2_CG14351:3;Name=haf-in;Parent=FBtr0077875;parent_type=mRNA" - - - -	292	1,586,411 – 1,586,505	+	7	106	63.55	-1.50	0.44	0.963945
215	dm3.chr2L	1,606,519 – 1,606,637	- - - intron="intron;ID=intron_CG14351:10_CG14351:11;Name=haf-in;Parent=FBtr0077875;parent_type=mRNA" - - - -	297	1,606,519 – 1,606,637	+	12	120	76.69	-1.85	0.60	0.984378
217	dm3.chr2L	1,622,535 – 1,622,626	- - - - - - - -	299	1,622,535 – 1,622,626	-	12	115	72.22	-1.67	0.65	0.981614
223	dm3.chr2L	1,677,225 – 1,677,298	- - - intron="intron;ID=intron_FBgn0086758:6_FBgn0086758:7;Name=chinmo-in;Parent=FBtr0077878,FBtr0303934;parent_type=mRNA" - - - -	305	1,677,225 – 1,677,298	+	6	76	78.18	-2.36	0.56	0.968609
224	dm3.chr2L	1,687,171 – 1,687,267	- - - intron="intron;ID=intron_FBgn0086758:7_FBgn0086758:8;Name=chinmo-in;Parent=FBtr0077878,FBtr0303934;parent_type=mRNA" - - - -	306	1,687,171 – 1,687,267	-	5	120	77.16	-1.98	0.73	0.953670
226	dm3.chr2L	1,696,779 – 1,696,870	- - - - - - - -	308	1,696,779 – 1,696,870	+	10	116	75.64	-2.25	0.57	0.980124
226	dm3.chr2L	1,696,779 – 1,696,870	- - - - - - - -	309	1,696,779 – 1,696,870	-	10	116	75.64	-2.06	0.53	0.938136
231	dm3.chr2L	1,754,258 – 1,754,362	- - - - - - - -	314	1,754,258 – 1,754,362	-	3	104	59.67	-1.54	0.59	0.961255
232	dm3.chr2L	1,760,993 – 1,761,067	- - - - - - - -	315	1,760,993 – 1,761,067	+	7	80	62.15	-1.93	0.51	0.998603
236	dm3.chr2L	1,768,157 – 1,768,273	- - - - - - - -	321	1,768,157 – 1,768,273	+	8	120	77.17	-1.86	0.55	0.906409
237	dm3.chr2L	1,768,785 – 1,768,876	- - - - - - - -	322	1,768,785 – 1,768,876	+	5	92	89.28	-2.36	0.87	0.977198
237	dm3.chr2L	1,768,785 – 1,768,876	- - - - - - - -	323	1,768,785 – 1,768,876	-	5	92	89.28	-2.42	0.78	0.941935
238	dm3.chr2L	1,769,415 – 1,769,514	- - - - - - - -	324	1,769,415 – 1,769,514	+	9	117	76.59	-2.89	0.68	0.998407
242	dm3.chr2L	1,798,832 – 1,798,929	- - - - - - - -	330	1,798,832 – 1,798,929	+	7	116	74.46	-1.72	0.74	0.983071
243	dm3.chr2L	1,800,504 – 1,800,557	- - - - - - - -	331	1,800,504 – 1,800,557	-	5	57	64.65	-1.66	0.46	0.958269
245	dm3.chr2L	1,813,631 – 1,813,724	- - - - - - - -	334	1,813,631 – 1,813,724	-	9	116	74.03	-2.24	0.83	0.996753
248	dm3.chr2L	1,819,701 – 1,819,807	- - - - - - - -	337	1,819,701 – 1,819,807	+	7	117	78.81	-1.98	0.58	0.905028
252	dm3.chr2L	1,827,031 – 1,827,149	- - - - - - - -	342	1,827,031 – 1,827,149	+	6	118	71.70	-1.68	0.55	0.950137
253	dm3.chr2L	1,831,670 – 1,831,778	FBnoncoding="pre_miRNA;ID=FBtr0304391;Name=mir-2280-RM;Parent=FBgn0262275;Alias=CR42982-RM;Dbxref=FlyBase_Annotation_IDs:CR42982-RM,miRBase:MI0011290" - - - - - - "mirBase_v16=dme-mir-2280\|7.1e-49"	344	1,831,670 – 1,831,778	-	6	116	66.34	-2.10	0.52	0.995560
255	dm3.chr2L	1,845,823 – 1,845,978	- - - intron="intron;ID=intron_FBgn0051665:3_FBgn0051665:4;Name=CG31665-in;Parent=FBtr0089787,FBtr0089786,FBtr0304911;parent_type=mRNA" - - - -	349	1,845,883 – 1,845,978	-	6	96	70.15	-2.19	0.41	0.960271
259	dm3.chr2L	1,885,440 – 1,885,539	- - - intron="intron;ID=intron_FBgn0031374:1_FBgn0031374:2;Name=CG7337-in;Parent=FBtr0077811,FBtr0113012;parent_type=mRNA" - - - -	353	1,885,440 – 1,885,539	+	4	99	86.01	-2.59	0.67	0.903355
265	dm3.chr2L	1,938,086 – 1,938,165	FBnoncoding="tRNA;ID=FBtr0077872;Name=tRNA:G3:22BCa-RA;Parent=FBgn0011859;Dbxref=FlyBase_Annotation_IDs:CR31667-RA;score_text=Weakly" tRNAscann="Gly_chr2L_trna40" - intron="intron;ID=intron_FBgn0031374:14_FBgn0031374:15;Name=CG7337-in;Parent=FBtr0077811,FBtr0110882,FBtr0110883,FBtr0113011,FBtr0113012;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|8.2e-32" "Noncode_2.0=n122145_u121243_DQ595536_piRNA_human\|9.5e-07" "unique_Noncode_2.0=u121243_piRNA_human\|8.3e-07" -	362	1,938,086 – 1,938,165	+	15	81	77.35	-1.75	0.84	0.994229
265	dm3.chr2L	1,938,086 – 1,938,165		363	1,938,086 – 1,938,165	-	15	81	77.35	-1.83	0.90	0.994438
266	dm3.chr2L	1,948,458 – 1,948,556	- - - - - - - -	364	1,948,458 – 1,948,556	+	10	105	62.87	-1.04	0.42	0.921015
267	dm3.chr2L	1,965,421 – 1,965,525	FBnoncoding="tRNA;ID=FBtr0077812;Name=tRNA:CR31942-RA;Parent=FBgn0051942;Alias=CR31942-RA;Dbxref=FlyBase_Annotation_IDs:CR31942-RA;score_text=Weakly" tRNAscann="Arg_chr2L_trna1" - - "Rfam_10.0=RF00005;tRNA;AAPU01010529.1/69809-69881\|7.1e-30" - - -	365	1,965,421 – 1,965,525	+	12	120	74.44	-1.34	0.89	0.983609
267	dm3.chr2L	1,965,421 – 1,965,525		366	1,965,421 – 1,965,525	-	12	120	74.44	-2.64	0.90	0.998519
268	dm3.chr2L	1,986,505 – 1,986,601	- - - intron="intron;ID=intron_FBgn0001125:6_FBgn0001125:4;Name=Got2-in;Parent=FBtr0077868;parent_type=mRNA" - - - -	367	1,986,505 – 1,986,601	+	8	110	59.43	-1.79	0.51	0.998742
268	dm3.chr2L	1,986,505 – 1,986,601		368	1,986,505 – 1,986,601	-	8	110	59.43	-1.33	0.40	0.955387
271	dm3.chr2L	2,002,342 – 2,002,445	- - - intron="intron;ID=intron_FBgn0053543:6_FBgn0053543:5;Name=CG33543-in;Parent=FBtr0091509;parent_type=mRNA" - - - -	372	2,002,342 – 2,002,445	-	5	112	80.77	-3.76	0.74	0.999191
272	dm3.chr2L	2,009,493 – 2,009,609	FBnoncoding="tRNA;ID=FBtr0077819;Name=tRNA:CR31944-RA;Parent=FBgn0051944;Alias=CR31944-RA;Dbxref=FlyBase_Annotation_IDs:CR31944-RA;score_text=Weakly" tRNAscann="Gln_chr2L_trna3" - - "Rfam_10.0=RF00005;tRNA;AANI01016231.1/175977-176048\|5.4e-34" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|1.9e-24" "unique_Noncode_2.0=u183049_mRNAlike\|1.7e-24" -	374	2,009,493 – 2,009,609	-	13	135	76.63	-1.93	0.86	0.994367
273	dm3.chr2L	2,010,627 – 2,010,724	FBnoncoding="tRNA;ID=FBtr0077862;Name=tRNA:CR31939-RA;Parent=FBgn0051939;Alias=CR31939-RA;Dbxref=FlyBase_Annotation_IDs:CR31939-RA;score_text=Weakly" tRNAscann="Gln_chr2L_trna39" - intron="intron;ID=intron_FBgn0031384:1_FBgn0031384:4;Name=CG4238-in;Parent=FBtr0301068;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AANI01016231.1/175977-176048\|4.4e-34" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|1.5e-24" "unique_Noncode_2.0=u183049_mRNAlike\|1.3e-24" -	375	2,010,627 – 2,010,724	+	12	114	83.72	-2.33	0.89	0.992814
273	dm3.chr2L	2,010,627 – 2,010,724		376	2,010,627 – 2,010,724	-	12	114	83.72	-1.56	0.84	0.923214
274	dm3.chr2L	2,010,858 – 2,010,949	FBnoncoding="tRNA;ID=FBtr0077861;Name=tRNA:CR31940-RA;Parent=FBgn0051940;Alias=CR31940-RA;Dbxref=FlyBase_Annotation_IDs:CR31940-RA;score_text=Weakly" tRNAscann="Gln_chr2L_trna38" - intron="intron;ID=intron_FBgn0031384:1_FBgn0031384:4;Name=CG4238-in;Parent=FBtr0301068;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AANI01016231.1/175977-176048\|2.4e-29" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|2.1e-20" "unique_Noncode_2.0=u183049_mRNAlike\|1.9e-20" -	377	2,010,858 – 2,010,949	+	11	95	85.78	-2.63	0.94	0.996402
274	dm3.chr2L	2,010,858 – 2,010,949		378	2,010,858 – 2,010,949	-	11	95	85.78	-1.48	0.95	0.956025
279	dm3.chr2L	2,034,927 – 2,035,041	- - CDS="CDS;ID=CDS_FBgn0259192:1_760;Name=CG42296-cds;Parent=FBtr0299676;parent_type=mRNA" - - - - -	383	2,034,927 – 2,035,041	+	10	114	75.65	-2.05	0.50	0.967398
282	dm3.chr2L	2,056,773 – 2,056,866	- - - intron="intron;ID=intron_CG15377:3_CG15377:4;Name=Or22c-in;Parent=FBtr0077826;parent_type=mRNA" - - - -	387	2,056,773 – 2,056,866	+	5	98	93.68	-1.76	0.97	0.948633
283	dm3.chr2L	2,058,222 – 2,058,347	- - - - - - - -	388	2,058,222 – 2,058,312	-	7	117	69.02	-1.74	0.56	0.954234
				389	2,058,251 – 2,058,347	+	8	120	68.74	-2.50	0.46	0.992592
				390	2,058,251 – 2,058,347	-	8	120	68.74	-2.54	0.33	0.928753
290	dm3.chr2L	2,091,978 – 2,092,107	- - - - - - - -	397	2,091,978 – 2,092,107	-	7	143	75.89	-2.39	0.52	0.957450
292	dm3.chr2L	2,112,677 – 2,112,732	- - - - - - - -	399	2,112,677 – 2,112,732	+	3	57	70.59	-2.43	0.60	0.982159
294	dm3.chr2L	2,119,266 – 2,119,343	- - - - - - - -	401	2,119,266 – 2,119,343	-	3	88	55.74	-1.61	0.48	0.923050
295	dm3.chr2L	2,125,638 – 2,125,739	- - - - - - - -	402	2,125,638 – 2,125,739	+	6	103	77.25	-2.20	0.55	0.959917
295	dm3.chr2L	2,125,638 – 2,125,739	- - - - - - - -	403	2,125,638 – 2,125,739	-	6	103	77.25	-2.14	0.50	0.905487
297	dm3.chr2L	2,129,762 – 2,129,855	- - - - - - - -	406	2,129,762 – 2,129,855	+	8	97	85.88	-2.03	0.76	0.921590
299	dm3.chr2L	2,144,834 – 2,144,932	- - CDS="CDS;ID=CDS_FBgn0031390:16_802;Name=tho2-cds;Parent=FBtr0301660;parent_type=mRNA" - - - - -	408	2,144,834 – 2,144,932	+	7	104	70.08	-1.86	0.40	0.905477
299	dm3.chr2L	2,144,834 – 2,144,932		409	2,144,834 – 2,144,932	-	7	104	70.08	-1.44	0.49	0.915415
300	dm3.chr2L	2,151,582 – 2,151,677	- - - - - - - -	410	2,151,582 – 2,151,677	+	4	95	62.48	-1.61	0.56	0.967283
301	dm3.chr2L	2,155,572 – 2,155,625	- - - - - - - -	411	2,155,572 – 2,155,625	+	3	53	92.31	-4.14	0.85	0.998088
301	dm3.chr2L	2,155,572 – 2,155,625	- - - - - - - -	412	2,155,572 – 2,155,625	-	3	53	92.31	-3.45	0.82	0.992638
303	dm3.chr2L	2,167,730 – 2,167,826	- - - - - - - -	414	2,167,730 – 2,167,826	-	7	111	66.68	-1.07	0.54	0.925048
305	dm3.chr2L	2,176,479 – 2,176,543	- - - - - - - -	417	2,176,479 – 2,176,543	-	3	71	54.37	-1.82	0.49	0.982417
306	dm3.chr2L	2,176,626 – 2,176,733	- - - - - - - -	418	2,176,626 – 2,176,733	+	10	123	76.96	-1.70	0.63	0.938912
308	dm3.chr2L	2,187,004 – 2,187,079	FBnoncoding="tRNA;ID=FBtr0077834;Name=tRNA:CR31946-RA;Parent=FBgn0051946;Alias=CR31946-RA;Dbxref=FlyBase_Annotation_IDs:CR31946-RA;score_text=Weakly" tRNAscann="Arg_chr2L_trna5" - - "Rfam_10.0=RF00005;tRNA;AABU01002692.1/2165640-2165712\|8.0e-35" - - -	420	2,187,004 – 2,187,079	+	13	75	89.65	-2.18	0.87	0.969231
313	dm3.chr2L	2,245,717 – 2,245,824	FBnoncoding="ncRNA;ID=FBtr0304029;Name=CR42859-RA;Parent=FBgn0262106;Dbxref=FlyBase_Annotation_IDs:CR42859-RA;score_text=Strongly" - - - - - - -	426	2,245,717 – 2,245,824	+	7	107	76.75	-1.15	0.86	0.935836
315	dm3.chr2L	2,248,873 – 2,248,935	- - - - - - - -	428	2,248,873 – 2,248,935	+	6	74	70.14	-1.97	0.56	0.980170
316	dm3.chr2L	2,262,880 – 2,262,978	- - - - - - - -	429	2,262,880 – 2,262,978	+	5	112	83.77	-3.25	0.81	0.997386
316	dm3.chr2L	2,262,880 – 2,262,978	- - - - - - - -	430	2,262,880 – 2,262,978	-	5	112	83.77	-3.95	0.74	0.998961
317	dm3.chr2L	2,266,208 – 2,266,338	- - - - - - - -	431	2,266,208 – 2,266,306	+	6	112	77.68	-2.26	0.70	0.984834
317	dm3.chr2L	2,266,208 – 2,266,338	- - - - - - - -	433	2,266,233 – 2,266,338	+	8	116	66.85	-2.29	0.38	0.978938
318	dm3.chr2L	2,274,059 – 2,274,170	- - - - - - - -	434	2,274,059 – 2,274,170	+	10	117	65.53	-1.87	0.34	0.916794
319	dm3.chr2L	2,278,759 – 2,278,870	- - - - - - - -	436	2,278,759 – 2,278,870	-	7	117	65.47	-2.18	0.32	0.941184
322	dm3.chr2L	2,287,927 – 2,287,986	- - - - - - - -	440	2,287,927 – 2,287,986	-	7	62	72.70	-2.06	0.54	0.988628
323	dm3.chr2L	2,292,518 – 2,292,611	- - - - - - - -	442	2,292,518 – 2,292,611	-	5	114	68.29	-2.90	0.33	0.955988
326	dm3.chr2L	2,305,138 – 2,305,228	- - - - - - - -	447	2,305,138 – 2,305,228	-	9	102	89.99	-1.70	0.91	0.917251
332	dm3.chr2L	2,331,757 – 2,331,885	- - - intron="intron;ID=intron_CG9967:7_CG9967:2;Name=CG9967-in;Parent=FBtr0100648;parent_type=mRNA" - - - -	454	2,331,781 – 2,331,885	+	9	121	61.77	-2.42	0.28	0.976914
334	dm3.chr2L	2,344,133 – 2,344,223	- - - intron="intron;ID=intron_FBgn0031414:5_FBgn0031414:6;Name=eys-in;Parent=FBtr0114370;parent_type=mRNA" - - - -	456	2,344,133 – 2,344,223	+	12	120	83.74	-3.01	0.54	0.967654
337	dm3.chr2L	2,375,893 – 2,376,040	- - - - - - - -	463	2,375,933 – 2,376,040	+	4	109	78.24	-3.18	0.60	0.995171
337	dm3.chr2L	2,375,893 – 2,376,040	- - - - - - - -	464	2,375,933 – 2,376,040	-	4	109	78.24	-2.55	0.58	0.958369
340	dm3.chr2L	2,398,204 – 2,398,297	- - - - - - - -	467	2,398,204 – 2,398,297	+	6	116	80.70	-2.42	0.71	0.976938
342	dm3.chr2L	2,411,016 – 2,411,116	- - - - - - - -	469	2,411,016 – 2,411,116	-	13	103	66.95	-0.70	0.54	0.947297
346	dm3.chr2L	2,430,156 – 2,430,286	- - - intron="intron;ID=intron_CG9885:1_CG9885:2;Name=dpp-in;Parent=FBtr0077771;parent_type=mRNA" - - - -	474	2,430,195 – 2,430,286	+	7	95	86.15	-3.01	0.83	0.995287
348	dm3.chr2L	2,436,714 – 2,436,806	- - - intron="intron;ID=intron_CG9885:1_CG9885:2;Name=dpp-in;Parent=FBtr0077771;parent_type=mRNA" - - - -	477	2,436,714 – 2,436,806	+	8	103	64.94	-1.73	0.38	0.916483
360	dm3.chr2L	2,476,604 – 2,476,732	- - - - - - - -	490	2,476,604 – 2,476,701	+	6	104	84.33	-4.49	0.72	0.999534
				491	2,476,604 – 2,476,701	-	6	104	84.33	-3.63	0.74	0.998568
				492	2,476,625 – 2,476,732	+	5	115	90.06	-2.91	0.86	0.991662
				493	2,476,625 – 2,476,732	-	5	115	90.06	-2.27	0.83	0.938642
362	dm3.chr2L	2,494,104 – 2,494,179	- - - intron="intron;ID=intron_CG9884:1_CG9884:2;Name=oaf-in;Parent=FBtr0077777,FBtr0077778,FBtr0077779,FBtr0077780;parent_type=mRNA" - - - -	495	2,494,104 – 2,494,179	+	8	76	79.80	-2.42	0.75	0.995086
362	dm3.chr2L	2,494,104 – 2,494,179		496	2,494,104 – 2,494,179	-	8	76	79.80	-2.51	0.72	0.995483
364	dm3.chr2L	2,515,497 – 2,515,599	- - - - - - - -	498	2,515,497 – 2,515,599	+	5	111	64.09	-1.29	0.48	0.911030
364	dm3.chr2L	2,515,497 – 2,515,599	- - - - - - - -	499	2,515,497 – 2,515,599	-	5	111	64.09	-1.81	0.41	0.948192
366	dm3.chr2L	2,530,513 – 2,530,584	- - - - - - - -	501	2,530,513 – 2,530,584	+	6	79	65.39	-2.24	0.48	0.994335
366	dm3.chr2L	2,530,513 – 2,530,584	- - - - - - - -	502	2,530,513 – 2,530,584	-	6	79	65.39	-2.46	0.47	0.996739
367	dm3.chr2L	2,531,447 – 2,531,552	- - - - - - - -	503	2,531,447 – 2,531,552	-	6	111	86.25	-2.14	0.90	0.981381
376	dm3.chr2L	2,596,670 – 2,596,723	- - - - - - - -	514	2,596,670 – 2,596,723	-	6	53	79.12	-1.67	0.71	0.929053
377	dm3.chr2L	2,601,588 – 2,601,744	- - - - - - - -	516	2,601,638 – 2,601,744	-	12	114	78.48	-2.41	0.48	0.951712
378	dm3.chr2L	2,603,778 – 2,603,876	- - - - - - - -	517	2,603,778 – 2,603,876	-	8	108	69.06	-1.59	0.48	0.929615
384	dm3.chr2L	2,645,516 – 2,645,615	- - - - - - - -	523	2,645,516 – 2,645,615	+	9	113	67.40	-1.10	0.55	0.959555
386	dm3.chr2L	2,649,547 – 2,649,705	- - CDS="CDS;ID=CDS_FBgn0053125:1_825;Name=CG33125-cds;Parent=FBtr0302456;parent_type=mRNA" - - - - -	525	2,649,547 – 2,649,665	-	6	119	75.89	-3.12	0.60	0.998817
				526	2,649,586 – 2,649,705	+	5	119	90.92	-3.49	0.85	0.996723
				527	2,649,586 – 2,649,705	-	5	119	90.92	-4.19	0.93	0.998978
387	dm3.chr2L	2,668,029 – 2,668,108	- - - - - - - -	528	2,668,029 – 2,668,108	-	6	79	71.24	-1.64	0.49	0.915945
389	dm3.chr2L	2,691,361 – 2,691,466	- - - intron="intron;ID=intron_FBgn0051690:5_FBgn0051690:6;Name=CG31690-in;Parent=FBtr0301682;parent_type=mRNA" - - - -	530	2,691,361 – 2,691,466	+	12	116	89.41	-2.60	0.83	0.983477
389	dm3.chr2L	2,691,361 – 2,691,466		531	2,691,361 – 2,691,466	-	12	116	89.41	-2.54	0.78	0.966072
390	dm3.chr2L	2,693,989 – 2,694,093	- - - intron="intron;ID=intron_FBgn0051690:5_FBgn0051690:6;Name=CG31690-in;Parent=FBtr0301682;parent_type=mRNA" - - - -	533	2,693,989 – 2,694,093	-	7	111	75.33	-1.73	0.76	0.981526
393	dm3.chr2L	2,721,872 – 2,721,974	- - - - - - - -	536	2,721,872 – 2,721,974	-	12	113	82.39	-3.14	0.50	0.987271
404	dm3.chr2L	2,800,569 – 2,800,728	- - - - - - - -	551	2,800,569 – 2,800,688	+	3	119	66.48	-2.22	0.45	0.908620
409	dm3.chr2L	2,837,014 – 2,837,066	- - - intron="intron;ID=intron_FBgn0031466:4_FBgn0031466:3;Name=CG3119-in;Parent=FBtr0077692;parent_type=mRNA" - - - -	558	2,837,014 – 2,837,066	-	5	52	95.00	-1.84	0.99	0.966708
410	dm3.chr2L	2,858,063 – 2,858,160	- - - intron="intron;ID=intron_CG2991:1_CG2991:8;Name=CG2991-in;Parent=FBtr0077625;parent_type=mRNA" - - - -	559	2,858,063 – 2,858,160	+	7	119	60.36	-2.81	0.36	0.998259
411	dm3.chr2L	2,862,369 – 2,862,463	- - - intron="intron;ID=intron_CG2991:8_CG2991:2;Name=CG2991-in;Parent=FBtr0077625;parent_type=mRNA" - - - -	561	2,862,369 – 2,862,463	-	4	97	69.55	-1.95	0.70	0.988416
412	dm3.chr2L	2,875,806 – 2,875,857	- - CDS="CDS;ID=CDS_FBgn0031478:2_835;Name=CG8814-cds;Parent=FBtr0077629;parent_type=mRNA" - - - - -	562	2,875,806 – 2,875,857	+	5	51	63.73	-1.22	0.52	0.955063
414	dm3.chr2L	2,886,754 – 2,886,849	- - - intron="intron;ID=intron_FBgn0041111:1_FBgn0041111:4;Name=lilli-in;Parent=FBtr0077632,FBtr0077633;parent_type=mRNA" - - - -	564	2,886,754 – 2,886,849	+	8	97	77.26	-1.70	0.67	0.934805
417	dm3.chr2L	2,892,673 – 2,892,779	- - - intron="intron;ID=intron_FBgn0041111:5_FBgn0041111:8;Name=lilli-in;Parent=FBtr0290041;parent_type=mRNA" - - - -	568	2,892,673 – 2,892,779	+	7	113	67.52	-1.54	0.68	0.990317
419	dm3.chr2L	2,908,191 – 2,908,242	- - - intron="intron;ID=intron_FBgn0041111:5_FBgn0041111:8;Name=lilli-in;Parent=FBtr0290041;parent_type=mRNA" - - - -	571	2,908,191 – 2,908,242	+	3	53	71.34	-3.31	0.72	0.998971
425	dm3.chr2L	2,966,974 – 2,967,105	- - - - - - - -	579	2,966,974 – 2,967,105	+	6	146	75.38	-2.04	0.70	0.984547
425	dm3.chr2L	2,966,974 – 2,967,105	- - - - - - - -	580	2,966,974 – 2,967,105	-	6	146	75.38	-2.01	0.68	0.980070
427	dm3.chr2L	3,000,211 – 3,000,262	- - - - - - - -	583	3,000,211 – 3,000,262	-	6	52	88.96	-2.43	0.80	0.960542
430	dm3.chr2L	3,015,724 – 3,015,815	- - - - - - - -	586	3,015,724 – 3,015,815	-	9	107	59.64	-2.83	0.32	0.998550
431	dm3.chr2L	3,026,909 – 3,027,016	- - - - - - - -	587	3,026,909 – 3,027,016	+	12	117	64.97	-0.51	0.54	0.914374
434	dm3.chr2L	3,046,641 – 3,046,863	- - - intron="intron;ID=intron_CG3524:2_CG3524:3;Name=v(2)k05816-in;Parent=FBtr0077657;parent_type=mRNA" - - - -	591	3,046,732 – 3,046,843	+	5	117	76.15	-2.38	0.58	0.980119
435	dm3.chr2L	3,048,685 – 3,048,844	FBnoncoding="snRNA;ID=FBtr0077658;Name=snRNA:U5:23D-RA;Parent=FBgn0003934;Dbxref=FlyBase_Annotation_IDs:CR32999-RA,REFSEQ:NR_001612;score_text=Weakly" - - intron="intron;ID=intron_CG3524:3_CG3524:4;Name=v(2)k05816-in;Parent=FBtr0077657;parent_type=mRNA" "Rfam_10.0=RF00020;U5;AC092187.2/3453-3572\|1.8e-62" "Noncode_2.0=n362_u342_AE003581_snRNA_Drosophila\|4.8e-69" "unique_Noncode_2.0=u342_snRNA_Drosophila\|4.2e-69" -	593	3,048,685 – 3,048,844	+	12	161	79.95	-2.64	0.61	0.994842
438	dm3.chr2L	3,067,766 – 3,067,864	- - - - - - - -	596	3,067,766 – 3,067,864	+	11	113	66.75	-3.02	0.44	0.999593
439	dm3.chr2L	3,079,749 – 3,079,839	- - - - - - - -	599	3,079,749 – 3,079,839	-	7	115	63.82	-2.34	0.49	0.997612
445	dm3.chr2L	3,100,246 – 3,100,298	- - - intron="intron;ID=intron_FBgn0015600:12_FBgn0015600:11;Name=toc-in;Parent=FBtr0110903;parent_type=mRNA" - - - -	605	3,100,246 – 3,100,298	+	5	59	64.60	-1.37	0.57	0.957967
446	dm3.chr2L	3,113,897 – 3,114,046	- - - - - - - -	606	3,113,897 – 3,114,016	-	6	119	70.08	-1.23	0.63	0.964486
453	dm3.chr2L	3,143,248 – 3,143,431	- - - intron="intron;ID=intron_FBgn0015600:17_FBgn0015600:16;Name=toc-in;Parent=FBtr0077662;parent_type=mRNA" - - - -	615	3,143,248 – 3,143,340	+	3	94	54.64	-1.81	0.43	0.965930
454	dm3.chr2L	3,149,232 – 3,149,332	- - - - - - - -	617	3,149,232 – 3,149,332	+	8	109	78.52	-1.46	0.76	0.918089
459	dm3.chr2L	3,214,312 – 3,214,414	- - - - - - - -	622	3,214,312 – 3,214,414	+	10	109	69.66	-1.69	0.47	0.984254
467	dm3.chr2L	3,246,431 – 3,246,524	- - - - - - - -	631	3,246,431 – 3,246,524	+	7	109	83.08	-2.73	0.52	0.910767
469	dm3.chr2L	3,265,027 – 3,265,122	- - - - - - - -	633	3,265,027 – 3,265,122	+	7	104	63.00	-1.27	0.52	0.983224
474	dm3.chr2L	3,275,226 – 3,275,366	- - - - - - - -	638	3,275,226 – 3,275,341	+	7	116	62.54	-1.18	0.45	0.949161
474	dm3.chr2L	3,275,226 – 3,275,366	- - - - - - - -	639	3,275,265 – 3,275,366	+	8	115	57.78	-1.00	0.52	0.983896
478	dm3.chr2L	3,343,191 – 3,343,317	- - - intron="intron;ID=intron_CG3327:3_CG3327:4;Name=E23-in;Parent=FBtr0089981;parent_type=mRNA" - - - -	644	3,343,191 – 3,343,287	-	8	112	60.45	-2.49	0.26	0.959140
478	dm3.chr2L	3,343,191 – 3,343,317		645	3,343,222 – 3,343,317	-	5	105	68.12	-2.12	0.76	0.997863
481	dm3.chr2L	3,368,731 – 3,368,821	- - - intron="intron;ID=intron_FBgn0085423:15_FBgn0085423:14;Name=CG34394-in;Parent=FBtr0112639,FBtr0112641;parent_type=mRNA" - - - -	648	3,368,731 – 3,368,821	-	3	110	64.94	-1.86	0.56	0.913195
485	dm3.chr2L	3,391,263 – 3,391,313	- - - - - - - -	652	3,391,263 – 3,391,313	+	5	51	82.54	-2.48	0.68	0.963194
485	dm3.chr2L	3,391,263 – 3,391,313	- - - - - - - -	653	3,391,263 – 3,391,313	-	5	51	82.54	-2.92	0.52	0.940820
486	dm3.chr2L	3,392,656 – 3,392,805	- - - - - - - -	655	3,392,696 – 3,392,805	+	6	114	81.93	-2.35	0.61	0.931764
489	dm3.chr2L	3,414,581 – 3,414,716	- - - intron="intron;ID=intron_FBgn0031530:7_FBgn0031530:6;Name=pgant2-in;Parent=FBtr0077592,FBtr0303992;parent_type=mRNA" - - - -	658	3,414,581 – 3,414,693	-	8	120	75.33	-1.88	0.54	0.935775
489	dm3.chr2L	3,414,581 – 3,414,716		659	3,414,613 – 3,414,716	-	8	122	73.07	-2.41	0.46	0.979598
491	dm3.chr2L	3,419,751 – 3,419,805	- - - intron="intron;ID=intron_FBgn0031530:7_FBgn0031530:6;Name=pgant2-in;Parent=FBtr0077592,FBtr0303992;parent_type=mRNA" - - - -	661	3,419,751 – 3,419,805	+	3	54	97.53	-2.13	0.92	0.916930
493	dm3.chr2L	3,441,223 – 3,441,313	- - - - - - - -	664	3,441,223 – 3,441,313	+	5	90	86.22	-2.48	0.66	0.906659
496	dm3.chr2L	3,463,261 – 3,463,428	- - CDS="CDS;ID=CDS_CG3241:3_706;Name=msl-2-cds;Parent=FBtr0077571;parent_type=mRNA" - - - - -	668	3,463,261 – 3,463,428	+	9	184	67.07	-2.48	0.39	0.995343
496	dm3.chr2L	3,463,261 – 3,463,428		669	3,463,261 – 3,463,428	-	9	184	67.07	-2.47	0.38	0.994152
498	dm3.chr2L	3,482,351 – 3,482,446	- - - intron="intron;ID=intron_FBgn0031542:2_FBgn0031542:1;Name=CG15414-in;Parent=FBtr0077568;parent_type=mRNA" - - - -	671	3,482,351 – 3,482,446	+	6	98	76.81	-1.75	0.61	0.914308
503	dm3.chr2L	3,528,948 – 3,529,038	- - - intron="intron;ID=intron_FBgn0031549:3_FBgn0031549:2;Name=Spindly-in;Parent=FBtr0301590;parent_type=mRNA" - - - -	677	3,528,948 – 3,529,038	-	12	106	60.60	-0.99	0.44	0.933513
507	dm3.chr2L	3,592,589 – 3,592,690	- - - - - - - -	681	3,592,589 – 3,592,690	-	9	111	83.71	-1.94	0.72	0.923723
508	dm3.chr2L	3,594,369 – 3,594,512	- - - - - - - -	682	3,594,369 – 3,594,512	+	13	150	90.11	-2.09	0.80	0.928726
512	dm3.chr2L	3,617,771 – 3,617,868	- - - - - - - -	686	3,617,771 – 3,617,868	+	11	117	60.42	-2.15	0.26	0.934342
513	dm3.chr2L	3,629,220 – 3,629,324	- - - intron="intron;ID=intron_FBgn0000721:13_FBgn0000721:10;Name=for-in;Parent=FBtr0089308;parent_type=mRNA" - - - -	688	3,629,220 – 3,629,320	+	4	101	62.63	-3.34	0.51	0.999795
				689	3,629,220 – 3,629,320	-	4	101	62.63	-2.13	0.49	0.992855
				690	3,629,224 – 3,629,324	+	4	102	64.44	-3.15	0.55	0.999652
				691	3,629,224 – 3,629,324	-	4	102	64.44	-2.21	0.55	0.995673
514	dm3.chr2L	3,632,593 – 3,632,647	- - - - - - - -	692	3,632,593 – 3,632,647	+	5	54	89.44	-2.58	0.73	0.924219
520	dm3.chr2L	3,666,272 – 3,666,410	- - - intron="intron;ID=intron_FBgn0085369:1_FBgn0085369:2;Name=CG34340-in;Parent=FBtr0302391;parent_type=mRNA" - - - -	699	3,666,272 – 3,666,410	+	9	143	76.41	-1.59	0.56	0.916181
526	dm3.chr2L	3,702,070 – 3,702,121	- - CDS="CDS;ID=CDS_FBgn0262621:2_782;Name=CG43145-cds;Parent=FBtr0305483;parent_type=mRNA" - - - - -	705	3,702,070 – 3,702,121	+	5	51	83.73	-2.20	0.69	0.913419
527	dm3.chr2L	3,712,327 – 3,712,438	- - CDS="CDS;ID=CDS_FBgn0051955:1_843;Name=CG31955-cds;Parent=FBtr0077540,FBtr0303782;parent_type=mRNA" - - - - -	706	3,712,327 – 3,712,438	-	6	120	73.51	-1.99	0.53	0.950006
529	dm3.chr2L	3,736,787 – 3,736,872	- - - - - - - -	708	3,736,787 – 3,736,872	+	6	98	61.34	-0.88	0.62	0.964527
529	dm3.chr2L	3,736,787 – 3,736,872	- - - - - - - -	709	3,736,787 – 3,736,872	-	6	98	61.34	-1.07	0.63	0.983321
532	dm3.chr2L	3,752,324 – 3,752,437	- - - - - - - -	712	3,752,324 – 3,752,437	+	5	116	77.79	-1.89	0.77	0.975257
535	dm3.chr2L	3,759,739 – 3,759,838	- - - - - - - -	716	3,759,739 – 3,759,838	-	10	119	84.77	-3.34	0.46	0.957951
538	dm3.chr2L	3,796,911 – 3,797,026	- - - - - - - -	719	3,796,911 – 3,797,026	+	6	119	79.23	-1.69	0.72	0.932878
540	dm3.chr2L	3,817,964 – 3,818,056	- - - - - - - -	722	3,817,964 – 3,818,056	-	11	106	67.58	-1.22	0.48	0.922989
541	dm3.chr2L	3,825,336 – 3,825,427	- - - - - - - -	724	3,825,336 – 3,825,427	-	10	117	78.89	-1.96	0.62	0.929427
543	dm3.chr2L	3,846,078 – 3,846,183	- - - - - - - -	726	3,846,078 – 3,846,183	-	7	109	67.88	-1.74	0.43	0.935745
545	dm3.chr2L	3,858,053 – 3,858,172	- - - - - - - -	728	3,858,053 – 3,858,156	+	11	115	80.19	-2.14	0.76	0.985576
545	dm3.chr2L	3,858,053 – 3,858,172	- - - - - - - -	729	3,858,058 – 3,858,172	+	12	120	81.69	-1.90	0.67	0.941893
546	dm3.chr2L	3,877,778 – 3,877,831	- - - intron="intron;ID=intron_FBgn0000256:5_FBgn0000256:4;Name=capu-in;Parent=FBtr0077511,FBtr0077512,FBtr0077513,FBtr0290077,FBtr0290078,FBtr0290079,FBtr0290080,FBtr0290081,FBtr0290082;parent_type=mRNA" - - - -	731	3,877,778 – 3,877,831	-	6	56	81.73	-2.15	0.73	0.964726
550	dm3.chr2L	3,909,592 – 3,909,695	- - - intron="intron;ID=intron_FBgn0051774:2_FBgn0051774:1;Name=fred-in;Parent=FBtr0077508,FBtr0290301;parent_type=mRNA" - - - -	735	3,909,592 – 3,909,695	+	6	108	83.89	-2.14	0.75	0.950804
550	dm3.chr2L	3,909,592 – 3,909,695		736	3,909,592 – 3,909,695	-	6	108	83.89	-3.28	0.75	0.997583
554	dm3.chr2L	3,935,853 – 3,935,917	- - - intron="intron;ID=intron_FBgn0051774:9_FBgn0051774:8;Name=fred-in;Parent=FBtr0077508,FBtr0290301;parent_type=mRNA" - - - -	741	3,935,853 – 3,935,917	-	5	64	99.37	-1.63	1.00	0.924603
556	dm3.chr2L	3,941,863 – 3,941,976	- - - intron="intron;ID=intron_FBgn0051774:9_FBgn0051774:8;Name=fred-in;Parent=FBtr0077508,FBtr0290301;parent_type=mRNA" - - - -	743	3,941,863 – 3,941,957	+	12	118	79.06	-1.60	0.69	0.907914
556	dm3.chr2L	3,941,863 – 3,941,976		744	3,941,880 – 3,941,976	+	12	112	82.27	-2.31	0.61	0.938234
558	dm3.chr2L	3,952,677 – 3,952,768	- - - - - - - -	748	3,952,677 – 3,952,768	-	9	111	73.84	-2.22	0.43	0.910813
559	dm3.chr2L	3,967,464 – 3,967,562	- - - - - - - -	749	3,967,464 – 3,967,562	-	5	98	82.65	-1.99	0.83	0.969743
560	dm3.chr2L	3,972,446 – 3,972,537	- - - - - - - -	750	3,972,446 – 3,972,537	-	5	92	88.51	-3.06	0.65	0.960988
563	dm3.chr2L	4,005,113 – 4,005,215	- - CDS="CDS;ID=CDS_FBgn0031579:1_842;Name=CG15422-cds;Parent=FBtr0077505;parent_type=mRNA" - - - - -	753	4,005,113 – 4,005,215	+	11	120	75.36	-1.90	0.53	0.905345
570	dm3.chr2L	4,055,103 – 4,055,194	- - - intron="intron;ID=intron_CG12676:2_CG12676:3;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	760	4,055,103 – 4,055,194	+	4	100	77.61	-1.94	0.89	0.977764
571	dm3.chr2L	4,058,131 – 4,058,184	- - - intron="intron;ID=intron_CG12676:2_CG12676:3;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	761	4,058,131 – 4,058,184	-	5	53	95.09	-2.72	0.94	0.990475
573	dm3.chr2L	4,071,651 – 4,071,709	- - - intron="intron;ID=intron_CG12676:2_CG12676:3;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	763	4,071,651 – 4,071,709	+	5	58	91.38	-2.42	0.86	0.963768
576	dm3.chr2L	4,086,927 – 4,087,056	- - - intron="intron;ID=intron_CG12676:5_CG12676:6;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	767	4,086,927 – 4,087,056	-	7	144	81.95	-2.27	0.59	0.902246
582	dm3.chr2L	4,128,556 – 4,128,650	- - - - - - - -	774	4,128,556 – 4,128,650	-	5	97	92.21	-4.03	0.92	0.998718
585	dm3.chr2L	4,138,880 – 4,138,972	- - - - - - - -	777	4,138,880 – 4,138,972	-	8	92	78.59	-2.54	0.49	0.978191
589	dm3.chr2L	4,154,810 – 4,154,901	- - - - - - - -	782	4,154,810 – 4,154,901	+	6	108	79.74	-2.80	0.49	0.946738
592	dm3.chr2L	4,167,258 – 4,167,376	- - - - - - - -	786	4,167,258 – 4,167,376	-	12	139	75.31	-1.52	0.58	0.937581
594	dm3.chr2L	4,171,517 – 4,171,635	- - - - - - - -	789	4,171,523 – 4,171,635	-	8	115	79.37	-2.18	0.68	0.973304
597	dm3.chr2L	4,221,928 – 4,221,982	- - - - - - - -	794	4,221,928 – 4,221,982	-	8	54	94.11	-3.23	0.99	0.998050
598	dm3.chr2L	4,223,835 – 4,223,886	- - - - - - - -	795	4,223,835 – 4,223,886	-	3	63	81.32	-2.95	0.58	0.939153
601	dm3.chr2L	4,243,222 – 4,243,341	- - - - - - - -	798	4,243,222 – 4,243,341	+	3	119	87.01	-2.46	0.77	0.926380
602	dm3.chr2L	4,243,945 – 4,244,085	- - - - - - - -	799	4,243,945 – 4,244,085	-	4	156	79.63	-2.14	0.73	0.956847
604	dm3.chr2L	4,252,790 – 4,252,890	- - - - - - - -	801	4,252,790 – 4,252,890	+	8	110	72.43	-1.71	0.61	0.981899
605	dm3.chr2L	4,253,649 – 4,253,744	- - - - - - - -	802	4,253,649 – 4,253,744	+	5	97	93.13	-2.39	0.92	0.978952
610	dm3.chr2L	4,265,603 – 4,265,680	- - - - - - - -	807	4,265,603 – 4,265,680	+	5	81	86.77	-2.31	0.81	0.962000
610	dm3.chr2L	4,265,603 – 4,265,680	- - - - - - - -	808	4,265,603 – 4,265,680	-	5	81	86.77	-2.67	0.77	0.979053
612	dm3.chr2L	4,272,224 – 4,272,317	- - - - - - - -	810	4,272,224 – 4,272,317	-	5	93	96.08	-2.71	0.91	0.982863
613	dm3.chr2L	4,276,141 – 4,276,236	- - - - - - - -	811	4,276,141 – 4,276,236	-	6	98	68.02	-1.81	0.53	0.992104
616	dm3.chr2L	4,281,535 – 4,281,631	- - - - - - - -	814	4,281,535 – 4,281,631	-	6	97	64.50	-1.56	0.44	0.946087
617	dm3.chr2L	4,282,772 – 4,282,877	- - - - - - - -	815	4,282,772 – 4,282,877	+	5	107	64.89	-2.51	0.30	0.929445
619	dm3.chr2L	4,316,279 – 4,316,383	- - - intron="intron;ID=intron_FBgn0010473:12_FBgn0010473:14;Name=tutl-in;Parent=FBtr0089271;parent_type=mRNA" - - - -	818	4,316,279 – 4,316,383	+	12	116	78.71	-3.83	0.88	0.999369
619	dm3.chr2L	4,316,279 – 4,316,383		819	4,316,279 – 4,316,383	-	12	116	78.71	-2.43	0.79	0.997144
621	dm3.chr2L	4,318,889 – 4,319,030	- - CDS="CDS;ID=CDS_FBgn0010473:16_811;Name=tutl-cds;Parent=FBtr0301863;parent_type=mRNA" - - - - -	822	4,318,911 – 4,319,030	+	11	119	83.35	-2.66	0.67	0.991022
622	dm3.chr2L	4,319,071 – 4,319,122	- - - intron="intron;ID=intron_FBgn0010473:16_FBgn0010473:17;Name=tutl-in;Parent=FBtr0301863;parent_type=mRNA" - - - -	823	4,319,071 – 4,319,122	+	4	51	85.62	-2.13	0.77	0.904205
623	dm3.chr2L	4,325,880 – 4,326,003	- - - intron="intron;ID=intron_CG16857:1_CG16857:2;Name=CG16857-in;Parent=FBtr0077425;parent_type=mRNA" - - - -	825	4,325,880 – 4,325,996	-	5	124	76.19	-2.58	0.60	0.983054
627	dm3.chr2L	4,333,492 – 4,333,545	- - - - - - - -	830	4,333,492 – 4,333,545	-	5	53	70.57	-1.97	0.55	0.980792
630	dm3.chr2L	4,361,694 – 4,361,814	- - - - - - - -	833	4,361,694 – 4,361,801	+	9	120	71.74	-1.66	0.56	0.980007
				835	4,361,724 – 4,361,814	+	9	117	74.01	-2.36	0.45	0.932972
				836	4,361,724 – 4,361,814	-	9	117	74.01	-3.05	0.37	0.973192
637	dm3.chr2L	4,418,946 – 4,419,060	FBnoncoding="tRNA;ID=FBtr0077458;Name=tRNA:CR31963-RA;Parent=FBgn0051963;Alias=CR31963-RA;Dbxref=FlyBase_Annotation_IDs:CR31963-RA;score_text=Weakly" tRNAscann="Trp_chr2L_trna34" - - "Rfam_10.0=RF00005;tRNA;AACT01024226.1/911-979\|8.0e-30" - - -	844	4,418,946 – 4,419,060	+	12	128	75.39	-0.74	0.89	0.920786
646	dm3.chr2L	4,478,113 – 4,478,218	- - - - - - - -	855	4,478,113 – 4,478,218	+	12	117	68.66	-2.39	0.31	0.946575
646	dm3.chr2L	4,478,113 – 4,478,218	- - - - - - - -	856	4,478,113 – 4,478,218	-	12	117	68.66	-2.82	0.29	0.981164
648	dm3.chr2L	4,485,411 – 4,485,502	- - - intron="intron;ID=intron_FBgn0053196:7_FBgn0053196:6;Name=dp-in;Parent=FBtr0290006,FBtr0305136,FBtr0305137,FBtr0305138,FBtr0305139,FBtr0305140,FBtr0305141,FBtr0305142,FBtr0305143,FBtr0305144,FBtr0305145,FBtr0305146;parent_type=mRNA" - - - -	859	4,485,411 – 4,485,502	+	4	93	67.75	-2.60	0.42	0.983410
648	dm3.chr2L	4,485,411 – 4,485,502		860	4,485,411 – 4,485,502	-	4	93	67.75	-1.30	0.63	0.927761
653	dm3.chr2L	4,567,395 – 4,567,512	- - - intron="intron;ID=intron_FBgn0053196:77_FBgn0053196:76;Name=dp-in;Parent=FBtr0290006,FBtr0305136,FBtr0305137,FBtr0305138,FBtr0305139,FBtr0305140,FBtr0305141,FBtr0305142,FBtr0305143,FBtr0305144,FBtr0305145,FBtr0305146;parent_type=mRNA" - - - -	866	4,567,395 – 4,567,512	-	5	118	84.27	-2.68	0.66	0.962640
661	dm3.chr2L	4,601,896 – 4,602,084	- - - - - - - -	875	4,601,896 – 4,602,084	-	3	192	49.73	-2.96	0.31	0.996894
665	dm3.chr2L	4,619,936 – 4,620,106	- - - - - - - -	880	4,619,936 – 4,620,046	+	12	119	86.10	-2.67	0.66	0.973793
				881	4,619,936 – 4,620,046	-	12	119	86.10	-2.05	0.75	0.932230
				882	4,619,966 – 4,620,077	+	12	119	89.43	-2.91	0.92	0.996435
				883	4,619,966 – 4,620,077	-	12	119	89.43	-3.55	0.94	0.998659
				885	4,620,006 – 4,620,106	-	8	102	86.25	-3.07	0.54	0.959779
667	dm3.chr2L	4,627,618 – 4,627,718	- - - - - - - -	887	4,627,618 – 4,627,718	-	5	100	98.00	-3.14	0.99	0.996723
671	dm3.chr2L	4,644,264 – 4,644,415	- - CDS="CDS;ID=CDS_FBgn0031617:2_763;Name=CG15635-cds;Parent=FBtr0300354;parent_type=mRNA" - - - - -	892	4,644,264 – 4,644,415	+	6	153	67.81	-1.63	0.42	0.925574
671	dm3.chr2L	4,644,264 – 4,644,415		893	4,644,264 – 4,644,415	-	6	153	67.81	-1.65	0.45	0.958811
675	dm3.chr2L	4,668,890 – 4,668,944	- - - - - - - -	898	4,668,890 – 4,668,944	+	3	55	70.73	-2.13	0.58	0.930379
677	dm3.chr2L	4,683,810 – 4,683,924	- - CDS="CDS;ID=CDS_CG12205:2_719;Name=Bsg25A-cds;Parent=FBtr0077423;parent_type=mRNA" intron="intron;ID=intron_CG11929:2_CG11929:3;Name=CG11929-in;Parent=FBtr0077377;parent_type=mRNA" - - - -	901	4,683,810 – 4,683,924	-	6	116	77.95	-2.06	0.55	0.905405
682	dm3.chr2L	4,717,955 – 4,718,059	- - - intron="intron;ID=intron_FBgn0085380:4_FBgn0085380:5;Name=CG34351-in;Parent=FBtr0112561;parent_type=mRNA" - - - -	906	4,717,955 – 4,718,059	-	7	114	67.20	-1.40	0.59	0.970031
684	dm3.chr2L	4,725,804 – 4,725,906	- - - - - - - -	909	4,725,804 – 4,725,906	+	6	118	69.07	-1.47	0.52	0.914103
693	dm3.chr2L	4,797,909 – 4,798,008	- - - intron="intron;ID=intron_CG3244:2_CG3244:3;Name=Clect27-in;Parent=FBtr0077417;parent_type=mRNA" - - - -	919	4,797,911 – 4,798,008	-	5	97	70.97	-1.64	0.56	0.935205
696	dm3.chr2L	4,805,484 – 4,805,596	- - - - - - - -	922	4,805,484 – 4,805,596	+	11	114	80.25	-2.25	0.76	0.993329
696	dm3.chr2L	4,805,484 – 4,805,596	- - - - - - - -	923	4,805,484 – 4,805,596	-	11	114	80.25	-2.48	0.72	0.995560
698	dm3.chr2L	4,848,243 – 4,848,369	- - CDS="CDS;ID=CDS_FBgn0031638:1_722;Name=CG11927-cds;Parent=FBtr0077386;parent_type=mRNA" - - - - -	925	4,848,243 – 4,848,340	+	3	116	66.26	-2.36	0.56	0.980376
698	dm3.chr2L	4,848,243 – 4,848,369		926	4,848,243 – 4,848,340	-	3	116	66.26	-2.22	0.61	0.982448
705	dm3.chr2L	4,885,596 – 4,885,666	- - - - - - - -	934	4,885,596 – 4,885,666	+	8	71	66.89	-3.40	0.82	0.999762
705	dm3.chr2L	4,885,596 – 4,885,666	- - - - - - - -	935	4,885,596 – 4,885,666	-	8	71	66.89	-1.39	0.65	0.992487
710	dm3.chr2L	5,001,447 – 5,001,541	- - - - - - - -	940	5,001,447 – 5,001,541	+	8	100	66.93	-1.66	0.51	0.987522
711	dm3.chr2L	5,023,956 – 5,024,084	- - - intron="intron;ID=intron_CG16858:2_CG16858:3;Name=vkg-in;Parent=FBtr0079036;parent_type=mRNA" - - - -	942	5,023,956 – 5,024,048	+	3	96	87.86	-2.52	0.90	0.985591
712	dm3.chr2L	5,036,279 – 5,036,379	- - - intron="intron;ID=intron_CG4145:8_CG4145:9;Name=Cg25C-in;Parent=FBtr0079001,FBtr0079002,FBtr0079003;parent_type=mRNA" - - - -	944	5,036,279 – 5,036,379	+	4	112	74.96	-4.61	0.72	0.999771
712	dm3.chr2L	5,036,279 – 5,036,379		945	5,036,279 – 5,036,379	-	4	112	74.96	-3.30	0.60	0.998064
715	dm3.chr2L	5,063,917 – 5,064,082	- - - intron="intron;ID=intron_FBgn0028572:2_FBgn0028572:6;Name=qtc-in;Parent=FBtr0079012,FBtr0100260,FBtr0100259;parent_type=mRNA" - - - -	948	5,063,917 – 5,064,082	-	6	187	71.21	-2.24	0.41	0.906658
717	dm3.chr2L	5,068,563 – 5,068,698	FBnoncoding="pre_miRNA;ID=FBtr0304261;Name=mir-2495-RM;Parent=FBgn0262213;Alias=CR42920-RM;Dbxref=FlyBase_Annotation_IDs:CR42920-RM,miRBase:MI0011584" - - intron="intron;ID=intron_FBgn0028572:8_FBgn0028572:10;Name=qtc-in;Parent=FBtr0079014,FBtr0079013,FBtr0079015,FBtr0079012,FBtr0100260;parent_type=mRNA" - - - "mirBase_v16=dme-mir-2495\|2.7e-61"	950	5,068,563 – 5,068,661	+	9	108	69.64	-1.99	0.49	0.986272
				951	5,068,563 – 5,068,661	-	9	108	69.64	-2.32	0.42	0.985515
				952	5,068,593 – 5,068,698	+	7	108	71.30	-1.27	0.61	0.945579
				953	5,068,593 – 5,068,698	-	7	108	71.30	-1.76	0.54	0.976737
718	dm3.chr2L	5,070,975 – 5,071,084	- - - intron="intron;ID=intron_FBgn0028696:1_FBgn0028696:4;Name=RpL37A-in;Parent=FBtr0302570;parent_type=mRNA" - - - -	954	5,070,975 – 5,071,084	+	4	120	66.23	-2.49	0.36	0.926385
719	dm3.chr2L	5,071,389 – 5,071,567	- - - intron="intron;ID=intron_FBgn0028696:5_FBgn0028696:7;Name=RpL37A-in;Parent=FBtr0302570;parent_type=mRNA" - - - -	955	5,071,389 – 5,071,567	+	5	183	70.24	-2.73	0.53	0.996821
721	dm3.chr2L	5,090,566 – 5,090,661	- - - intron="intron;ID=intron_FBgn0031681:10_FBgn0031681:9;Name=pgant5-in;Parent=FBtr0111024,FBtr0079026;parent_type=mRNA" - - - -	957	5,090,566 – 5,090,661	+	4	120	68.77	-1.86	0.59	0.932131
722	dm3.chr2L	5,097,932 – 5,098,060	- - CDS="CDS;ID=CDS_FBgn0031683:4_747;Name=CG4230-cds;Parent=FBtr0079019;parent_type=mRNA" - - - - -	960	5,097,967 – 5,098,060	+	9	111	64.76	-1.43	0.45	0.968662
727	dm3.chr2L	5,141,303 – 5,141,539	- - CDS="CDS;ID=CDS_FBgn0261836:12_720;Name=Msp-300-cds;Parent=FBtr0303383;parent_type=mRNA" - - - - -	966	5,141,303 – 5,141,423	+	11	120	74.42	-2.28	0.54	0.989912
727	dm3.chr2L	5,141,303 – 5,141,539		967	5,141,303 – 5,141,423	-	11	120	74.42	-2.73	0.64	0.998859
728	dm3.chr2L	5,152,159 – 5,152,252	- - - - - - - -	970	5,152,159 – 5,152,252	-	11	109	62.24	-1.04	0.53	0.978478
729	dm3.chr2L	5,154,775 – 5,154,874	- - CDS="CDS;ID=CDS_FBgn0261836:20_841;Name=Msp-300-cds;Parent=FBtr0303386;parent_type=mRNA" - - - - -	971	5,154,775 – 5,154,874	+	15	114	73.63	-2.67	0.41	0.992442
737	dm3.chr2L	5,230,694 – 5,230,788	- - - intron="intron;ID=intron_CG14026:7_CG14026:3;Name=tkv-in;Parent=FBtr0079089;parent_type=mRNA" - - - -	981	5,230,694 – 5,230,788	+	8	113	58.75	-4.42	0.42	0.999978
740	dm3.chr2L	5,240,766 – 5,240,850	FBnoncoding="tRNA;ID=FBtr0079064;Name=tRNA:CR31971-RA;Parent=FBgn0051971;Alias=CR31971-RA;Dbxref=FlyBase_Annotation_IDs:CR31971-RA;score_text=Weakly" tRNAscann="Asp_chr2L_trna8" - - "Rfam_10.0=RF00005;tRNA;ABJB010887279.1/1267-1338\|5.1e-24" "Noncode_2.0=n112842_u111940_DQ604839_piRNA_Norway\|2.6e-07" "unique_Noncode_2.0=u111940_piRNA_Norway\|2.3e-07" -	985	5,240,766 – 5,240,850	+	11	84	80.59	-1.13	0.89	0.934624
742	dm3.chr2L	5,245,678 – 5,245,777	- - - - - - - -	988	5,245,678 – 5,245,769	+	6	91	89.22	-2.36	0.87	0.979409
742	dm3.chr2L	5,245,678 – 5,245,777	- - - - - - - -	989	5,245,687 – 5,245,777	+	6	100	80.66	-1.77	0.74	0.930932
743	dm3.chr2L	5,249,883 – 5,249,984	- - - - - - - -	990	5,249,883 – 5,249,984	+	4	113	69.47	-2.01	0.52	0.934744
744	dm3.chr2L	5,250,298 – 5,250,419	- - - - - - - -	992	5,250,309 – 5,250,419	-	8	111	80.59	-2.16	0.71	0.975517
745	dm3.chr2L	5,254,133 – 5,254,231	- - - - - - - -	993	5,254,133 – 5,254,231	+	6	102	75.83	-1.65	0.64	0.943006
746	dm3.chr2L	5,257,866 – 5,257,983	- - - - - - - -	998	5,257,886 – 5,257,983	-	9	119	73.83	-2.32	0.60	0.994635
750	dm3.chr2L	5,283,673 – 5,283,793	- - - - - - - -	1002	5,283,673 – 5,283,770	-	8	109	84.73	-2.17	0.81	0.964595
750	dm3.chr2L	5,283,673 – 5,283,793	- - - - - - - -	1004	5,283,701 – 5,283,793	-	7	92	81.32	-3.01	0.67	0.994346
754	dm3.chr2L	5,296,744 – 5,296,876	- - - - - - - -	1008	5,296,744 – 5,296,839	+	4	95	73.90	-1.95	0.66	0.960716
754	dm3.chr2L	5,296,744 – 5,296,876	- - - - - - - -	1009	5,296,784 – 5,296,876	+	3	94	80.29	-3.98	0.70	0.998817
755	dm3.chr2L	5,309,970 – 5,310,020	- - - - - - - -	1011	5,309,970 – 5,310,020	+	3	50	89.33	-2.16	0.98	0.987149
755	dm3.chr2L	5,309,970 – 5,310,020	- - - - - - - -	1012	5,309,970 – 5,310,020	-	3	50	89.33	-3.01	0.97	0.997184
757	dm3.chr2L	5,378,140 – 5,378,230	- - - - - - - -	1014	5,378,140 – 5,378,230	+	6	100	67.89	-1.66	0.60	0.974086
758	dm3.chr2L	5,391,853 – 5,391,948	- - - - - - - -	1015	5,391,853 – 5,391,948	+	6	98	81.26	-2.70	0.46	0.909561
761	dm3.chr2L	5,416,981 – 5,417,101	- - - - - - - -	1018	5,416,981 – 5,417,073	+	11	107	78.55	-2.51	0.62	0.991981
761	dm3.chr2L	5,416,981 – 5,417,101	- - - - - - - -	1019	5,417,005 – 5,417,101	+	11	116	72.11	-2.20	0.45	0.977869
765	dm3.chr2L	5,438,603 – 5,438,738	- - - intron="intron;ID=intron_FBgn0051647:3_FBgn0051647:2;Name=CG31647-in;Parent=FBtr0079132;parent_type=mRNA" - - - -	1024	5,438,603 – 5,438,693	-	7	100	80.92	-1.85	0.79	0.962978
				1026	5,438,637 – 5,438,732	-	10	111	72.01	-2.85	0.62	0.999427
				1028	5,438,639 – 5,438,738	-	10	120	69.42	-2.41	0.59	0.998578
767	dm3.chr2L	5,439,955 – 5,440,090	- - - - - - - -	1030	5,439,955 – 5,440,061	+	10	118	81.80	-2.43	0.69	0.988410
767	dm3.chr2L	5,439,955 – 5,440,090	- - - - - - - -	1031	5,439,989 – 5,440,090	+	10	108	69.54	-2.27	0.95	0.997539
768	dm3.chr2L	5,448,132 – 5,448,270	- - - - - - - -	1034	5,448,132 – 5,448,236	-	9	106	78.35	-1.75	0.73	0.980103
769	dm3.chr2L	5,453,067 – 5,453,139	- - - - - - - -	1036	5,453,067 – 5,453,139	+	9	82	56.38	-2.11	0.46	0.999542
771	dm3.chr2L	5,479,958 – 5,480,063	- - - - - - - -	1039	5,479,958 – 5,480,063	-	12	113	84.71	-2.78	0.71	0.990777
776	dm3.chr2L	5,494,411 – 5,494,523	- - - - - - - -	1045	5,494,411 – 5,494,523	+	11	112	94.81	-2.00	1.00	0.984035
776	dm3.chr2L	5,494,411 – 5,494,523	- - - - - - - -	1046	5,494,411 – 5,494,523	-	11	112	94.81	-1.68	0.98	0.949027
778	dm3.chr2L	5,518,812 – 5,518,877	- - - - - - - -	1048	5,518,812 – 5,518,877	+	12	71	85.45	-2.22	0.68	0.921442
780	dm3.chr2L	5,545,864 – 5,545,955	- - - - - - - -	1051	5,545,864 – 5,545,955	+	10	105	63.50	-3.11	0.40	0.999741
780	dm3.chr2L	5,545,864 – 5,545,955	- - - - - - - -	1052	5,545,864 – 5,545,955	-	10	105	63.50	-2.55	0.27	0.980056
781	dm3.chr2L	5,565,618 – 5,565,779	FBnoncoding="snRNA;ID=FBtr0079108;Name=snRNA:U4:25F-RA;Parent=FBgn0041719;Dbxref=FlyBase_Annotation_IDs:CR32998-RA,REFSEQ:NR_001620;score_text=Weakly" - - - "Rfam_10.0=RF00015;U4;AE014134.5/5565619-5565763\|7.3e-65" "Noncode_2.0=n369_u349_AE003610_snRNA_Drosophila\|1.2e-66" "unique_Noncode_2.0=u349_snRNA_Drosophila\|1.0e-66" -	1053	5,565,618 – 5,565,779	+	13	173	74.77	-2.00	0.44	0.928658
783	dm3.chr2L	5,580,588 – 5,580,721	- - CDS="CDS;ID=CDS_FBgn0031722:3_719;Name=CG14011-cds;Parent=FBtr0079118;parent_type=mRNA" - - - - -	1056	5,580,588 – 5,580,691	+	13	114	67.39	-2.43	0.37	0.994882
				1057	5,580,588 – 5,580,691	-	13	114	67.39	-3.52	0.46	0.999928
				1059	5,580,624 – 5,580,721	-	13	110	62.55	-2.30	0.34	0.995903
784	dm3.chr2L	5,581,603 – 5,581,712	- - - - - - - -	1061	5,581,603 – 5,581,708	-	4	114	79.66	-2.39	0.67	0.958021
790	dm3.chr2L	5,640,947 – 5,641,049	FBnoncoding="pre_miRNA;ID=FBtr0304351;Name=mir-959-RM;Parent=FBgn0262256;Alias=CR42963-RM;Dbxref=FlyBase_Annotation_IDs:CR42963-RM,miRBase:MI0005814" - - intron="intron;ID=intron_FBgn0051646:10_FBgn0051646:9;Name=CG31646-in;Parent=FBtr0079114;parent_type=mRNA" - - - "mirBase_v16=dme-mir-959\|1.6e-46"	1069	5,640,947 – 5,641,049	+	9	116	77.53	-1.26	0.84	0.938171
792	dm3.chr2L	5,642,114 – 5,642,206	FBnoncoding="pre_miRNA;ID=FBtr0304325;Name=mir-964-RM;Parent=FBgn0262243;Alias=CR42950-RM;Dbxref=FlyBase_Annotation_IDs:CR42950-RM,miRBase:MI0005819" - - intron="intron;ID=intron_FBgn0051646:11_FBgn0051646:10;Name=CG31646-in;Parent=FBtr0079114;parent_type=mRNA" - - - "mirBase_v16=dme-mir-964\|8.8e-45"	1071	5,642,114 – 5,642,206	+	12	95	67.94	-4.45	0.51	0.999984
792	dm3.chr2L	5,642,114 – 5,642,206		1072	5,642,114 – 5,642,206	-	12	95	67.94	-3.59	0.51	0.999960
793	dm3.chr2L	5,651,763 – 5,651,859	- - CDS="CDS;ID=CDS_FBgn0051646:12_829;Name=CG31646-cds;Parent=FBtr0079114;parent_type=mRNA" - - - - -	1073	5,651,763 – 5,651,859	+	7	97	64.18	-1.81	0.40	0.967642
794	dm3.chr2L	5,654,817 – 5,654,875	- - - intron="intron;ID=intron_FBgn0051646:13_FBgn0051646:12;Name=CG31646-in;Parent=FBtr0079114;parent_type=mRNA" - - - -	1074	5,654,817 – 5,654,875	+	5	58	95.52	-2.88	0.99	0.996185
795	dm3.chr2L	5,656,243 – 5,656,345	- - - intron="intron;ID=intron_FBgn0051646:13_FBgn0051646:12;Name=CG31646-in;Parent=FBtr0079114;parent_type=mRNA" - - - -	1075	5,656,243 – 5,656,345	+	9	109	71.41	-2.40	0.36	0.943333
798	dm3.chr2L	5,680,296 – 5,680,424	- - - - - - - -	1078	5,680,296 – 5,680,424	+	5	135	82.24	-2.59	0.64	0.970284
802	dm3.chr2L	5,724,867 – 5,724,982	- - - - - - - -	1083	5,724,886 – 5,724,982	-	7	117	62.50	-1.57	0.41	0.921715
813	dm3.chr2L	5,863,996 – 5,864,138	- - - intron="intron;ID=intron_CG8965:1_CG8965:2;Name=CG8965-in;Parent=FBtr0079158;parent_type=mRNA" - - - -	1099	5,864,029 – 5,864,128	-	5	102	66.40	-2.13	0.41	0.962130
				1100	5,864,041 – 5,864,138	+	5	104	68.57	-2.10	0.60	0.994862
				1101	5,864,041 – 5,864,138	-	5	104	68.57	-1.84	0.54	0.975906
814	dm3.chr2L	5,868,948 – 5,869,051	- - - intron="intron;ID=intron_CG8965:1_CG8965:2;Name=CG8965-in;Parent=FBtr0079158;parent_type=mRNA" - - - -	1102	5,868,948 – 5,869,051	+	5	103	79.73	-2.46	0.57	0.941655
814	dm3.chr2L	5,868,948 – 5,869,051		1103	5,868,948 – 5,869,051	-	5	103	79.73	-2.93	0.48	0.959876
815	dm3.chr2L	5,881,057 – 5,881,161	- - - - - - - -	1104	5,881,057 – 5,881,161	+	12	119	69.29	-1.96	0.39	0.957691
815	dm3.chr2L	5,881,057 – 5,881,161	- - - - - - - -	1105	5,881,057 – 5,881,161	-	12	119	69.29	-2.04	0.34	0.913019
818	dm3.chr2L	5,902,085 – 5,902,182	- - - - - - - -	1109	5,902,085 – 5,902,182	-	6	102	66.24	-2.52	0.26	0.901657
820	dm3.chr2L	5,940,760 – 5,940,850	- - - - - - - -	1111	5,940,760 – 5,940,850	+	5	90	98.44	-2.64	0.98	0.990491
820	dm3.chr2L	5,940,760 – 5,940,850	- - - - - - - -	1112	5,940,760 – 5,940,850	-	5	90	98.44	-3.67	0.99	0.998133
824	dm3.chr2L	5,996,402 – 5,996,503	- - CDS="CDS;ID=CDS_CG9088:2_723;Name=lid-cds;Parent=FBtr0079231,FBtr0079232;parent_type=mRNA" - - - - -	1117	5,996,402 – 5,996,500	+	8	112	67.47	-2.19	0.58	0.998867
				1118	5,996,402 – 5,996,500	-	8	112	67.47	-2.90	0.60	0.999823
				1119	5,996,403 – 5,996,503	+	7	110	73.62	-2.03	0.62	0.991994
				1120	5,996,403 – 5,996,503	-	7	110	73.62	-2.99	0.64	0.999446
825	dm3.chr2L	6,001,979 – 6,002,093	- - - - - - - -	1121	6,001,979 – 6,002,093	+	5	116	64.02	-1.08	0.53	0.931695
826	dm3.chr2L	6,011,211 – 6,011,311	- - - - - - - -	1122	6,011,211 – 6,011,311	+	6	107	81.35	-1.87	0.70	0.901479
834	dm3.chr2L	6,114,148 – 6,114,244	- - - intron="intron;ID=intron_FBgn0051641:4_FBgn0051641:6;Name=stai-in;Parent=FBtr0079197,FBtr0079198;parent_type=mRNA" - - - -	1130	6,114,148 – 6,114,244	-	5	120	76.97	-1.95	0.66	0.908712
835	dm3.chr2L	6,127,633 – 6,127,686	- - CDS="CDS;ID=CDS_FBgn0031782:4_705;Name=WDR79-cds;Parent=FBtr0079210;parent_type=mRNA" - - - - -	1131	6,127,633 – 6,127,686	-	5	53	90.57	-1.46	1.03	0.969697
836	dm3.chr2L	6,133,393 – 6,133,486	- - - - - - - -	1132	6,133,393 – 6,133,486	+	4	93	94.17	-3.06	0.97	0.996609
841	dm3.chr2L	6,150,976 – 6,151,079	- - - - - - - -	1138	6,150,976 – 6,151,079	-	3	103	94.17	-2.23	0.89	0.929687
843	dm3.chr2L	6,156,700 – 6,156,791	- - - - - - - -	1141	6,156,700 – 6,156,791	-	4	93	64.42	-1.56	0.55	0.935313
846	dm3.chr2L	6,178,562 – 6,178,645	- - - - - - - -	1145	6,178,562 – 6,178,645	-	7	86	67.99	-1.85	0.51	0.977605
848	dm3.chr2L	6,186,351 – 6,186,459	- - - intron="intron;ID=intron_FBgn0085409:1_FBgn0085409:2;Name=CG34380-in;Parent=FBtr0112617;parent_type=mRNA" - - - -	1147	6,186,351 – 6,186,459	+	11	115	72.69	-1.87	0.42	0.918719
851	dm3.chr2L	6,213,580 – 6,213,641	- - - - - - - -	1150	6,213,580 – 6,213,641	-	8	67	75.14	-2.47	0.41	0.928391
857	dm3.chr2L	6,233,020 – 6,233,111	- - - - - - - -	1157	6,233,020 – 6,233,111	+	11	108	68.49	-1.59	0.49	0.970112
860	dm3.chr2L	6,246,255 – 6,246,310	- - - - - - - -	1160	6,246,255 – 6,246,310	+	5	55	91.77	-2.39	0.93	0.985081
862	dm3.chr2L	6,260,957 – 6,261,057	- - - intron="intron;ID=intron_FBgn0053531:1_FBgn0053531:2;Name=Ddr-in;Parent=FBtr0091497,FBtr0301305;parent_type=mRNA" - - - -	1162	6,260,957 – 6,261,057	-	12	116	78.12	-1.54	0.73	0.957981
863	dm3.chr2L	6,270,534 – 6,270,635	- - - - - - - -	1163	6,270,534 – 6,270,635	+	9	104	76.90	-2.44	0.57	0.989668
863	dm3.chr2L	6,270,534 – 6,270,635	- - - - - - - -	1164	6,270,534 – 6,270,635	-	9	104	76.90	-2.00	0.55	0.941641
864	dm3.chr2L	6,271,674 – 6,271,768	- - - - - - - -	1165	6,271,674 – 6,271,768	-	11	120	83.82	-1.81	0.84	0.943832
866	dm3.chr2L	6,278,991 – 6,279,099	- - - intron="intron;ID=intron_FBgn0053531:3_FBgn0053531:4;Name=Ddr-in;Parent=FBtr0091497,FBtr0301305;parent_type=mRNA" - - - -	1167	6,278,991 – 6,279,099	+	6	111	86.83	-2.51	0.94	0.994188
868	dm3.chr2L	6,287,236 – 6,287,338	- - - intron="intron;ID=intron_FBgn0053531:3_FBgn0053531:4;Name=Ddr-in;Parent=FBtr0091497,FBtr0301305;parent_type=mRNA" - - - -	1169	6,287,236 – 6,287,334	-	4	98	79.76	-2.51	0.73	0.986212
868	dm3.chr2L	6,287,236 – 6,287,338		1170	6,287,240 – 6,287,338	-	5	98	77.06	-1.82	0.69	0.923909
869	dm3.chr2L	6,302,292 – 6,302,428	- - - intron="intron;ID=intron_FBgn0053531:14_FBgn0053531:15;Name=Ddr-in;Parent=FBtr0091497;parent_type=mRNA" - - - -	1171	6,302,292 – 6,302,407	+	12	120	85.88	-2.83	0.67	0.987159
				1172	6,302,292 – 6,302,407	-	12	120	85.88	-3.05	0.68	0.993631
				1173	6,302,330 – 6,302,428	+	11	112	77.79	-3.07	0.52	0.997310
				1174	6,302,330 – 6,302,428	-	11	112	77.79	-3.16	0.54	0.998293
871	dm3.chr2L	6,325,506 – 6,325,611	- - CDS="CDS;ID=CDS_FBgn0021873:3_786;Name=Gef26-cds;Parent=FBtr0300038,FBtr0300039;parent_type=mRNA" - - - - -	1176	6,325,506 – 6,325,611	-	15	117	77.18	-2.35	0.42	0.935473
874	dm3.chr2L	6,351,659 – 6,351,769	- - - - - - - -	1179	6,351,659 – 6,351,769	+	8	135	59.38	-1.85	0.37	0.975436
874	dm3.chr2L	6,351,659 – 6,351,769	- - - - - - - -	1180	6,351,659 – 6,351,769	-	8	135	59.38	-2.88	0.51	0.999885
875	dm3.chr2L	6,372,294 – 6,372,439	- - - - - - - -	1181	6,372,294 – 6,372,404	-	5	120	85.11	-2.33	0.73	0.931034
881	dm3.chr2L	6,410,273 – 6,410,427	- - - intron="intron;ID=intron_FBgn0259714:10_FBgn0259714:9;Name=CG42368-in;Parent=FBtr0299967;parent_type=mRNA" - - - -	1188	6,410,273 – 6,410,387	+	5	120	93.81	-2.70	0.81	0.948001
883	dm3.chr2L	6,452,331 – 6,452,488	- - CDS="CDS;ID=CDS_CG9528:2_738;Name=retm-cds;Parent=FBtr0079272;parent_type=mRNA" - - - - -	1193	6,452,331 – 6,452,448	-	13	117	85.45	-2.99	0.70	0.995698
883	dm3.chr2L	6,452,331 – 6,452,488		1194	6,452,371 – 6,452,488	-	13	117	87.18	-2.55	0.62	0.936079
884	dm3.chr2L	6,455,160 – 6,455,237	- - - intron="intron;ID=intron_CG9528:1_CG9528:2;Name=retm-in;Parent=FBtr0079272;parent_type=mRNA" - - - -	1196	6,455,160 – 6,455,237	-	6	87	68.08	-2.48	0.57	0.998059
888	dm3.chr2L	6,480,819 – 6,480,885	- - - - - - - -	1200	6,480,819 – 6,480,885	-	6	75	67.05	-2.39	0.40	0.992380
889	dm3.chr2L	6,480,967 – 6,481,084	- - - - - - - -	1201	6,480,967 – 6,481,065	+	5	98	93.37	-2.53	0.79	0.904632
				1202	6,480,967 – 6,481,065	-	5	98	93.37	-4.08	0.88	0.998390
				1204	6,480,988 – 6,481,084	-	5	96	94.06	-2.80	0.82	0.964473
894	dm3.chr2L	6,514,964 – 6,515,058	- - - intron="intron;ID=intron_CG31637:1_CG31637:2;Name=CG31637-in;Parent=FBtr0079287;parent_type=mRNA" - - - -	1210	6,514,964 – 6,515,058	-	6	94	67.10	-1.30	0.56	0.954324
897	dm3.chr2L	6,566,489 – 6,566,541	- - - - - - - -	1214	6,566,489 – 6,566,541	-	5	52	87.50	-2.90	0.67	0.958119
904	dm3.chr2L	6,643,813 – 6,643,930	- - - intron="intron;ID=intron_FBgn0051635:8_FBgn0051635:7;Name=CG31635-in;Parent=FBtr0079326,FBtr0113410;parent_type=mRNA" - - - -	1222	6,643,813 – 6,643,930	+	5	118	71.95	-1.42	0.62	0.908020
913	dm3.chr2L	6,746,761 – 6,746,890	- - - - - - - -	1231	6,746,761 – 6,746,873	+	5	114	85.71	-2.56	0.78	0.979623
914	dm3.chr2L	6,766,938 – 6,767,090	- - - - - - - -	1233	6,766,938 – 6,767,053	+	12	119	78.63	-2.12	0.52	0.950264
914	dm3.chr2L	6,766,938 – 6,767,090	- - - - - - - -	1234	6,766,938 – 6,767,053	-	12	119	78.63	-2.71	0.52	0.993045
915	dm3.chr2L	6,769,229 – 6,769,327	- - - intron="intron;ID=intron_FBgn0031857:12_FBgn0031857:11;Name=CG11321-in;Parent=FBtr0079386;parent_type=mRNA" - - - -	1237	6,769,229 – 6,769,327	+	3	98	67.27	-4.16	0.64	0.999792
915	dm3.chr2L	6,769,229 – 6,769,327		1238	6,769,229 – 6,769,327	-	3	98	67.27	-5.57	0.66	0.999866
923	dm3.chr2L	6,799,737 – 6,799,817	FBnoncoding="tRNA;ID=FBtr0079338;Name=tRNA:CR31631-RA;Parent=FBgn0051631;Alias=CR31631-RA;Dbxref=FlyBase_Annotation_IDs:CR31631-RA;score_text=Weakly" tRNAscann="Arg_chr2L_trna9" - - "Rfam_10.0=RF00005;tRNA;AASV01033824.1/1067-1139\|1.4e-33" "Noncode_2.0=n190285_u187588_AK030470_mRNAlike\|2.0e-29" "unique_Noncode_2.0=u187588_mRNAlike\|1.8e-29" -	1250	6,799,737 – 6,799,817	+	13	95	71.06	-1.20	0.93	0.984489
923	dm3.chr2L	6,799,737 – 6,799,817		1251	6,799,737 – 6,799,817	-	13	95	71.06	-1.97	0.81	0.998274
924	dm3.chr2L	6,805,285 – 6,805,405	- - - - - - - -	1252	6,805,285 – 6,805,405	+	6	120	73.32	-1.50	0.75	0.970392
927	dm3.chr2L	6,813,438 – 6,813,522	- - - - - - - -	1255	6,813,438 – 6,813,522	+	11	84	96.90	-3.89	0.91	0.997701
928	dm3.chr2L	6,813,626 – 6,813,719	- - - - - - - -	1257	6,813,626 – 6,813,719	-	8	103	71.07	-2.27	0.34	0.914964
932	dm3.chr2L	6,830,189 – 6,830,305	- - - intron="intron;ID=intron_CG31632:1_CG31632:2;Name=sens-2-in;Parent=FBtr0079341;parent_type=mRNA" - - - -	1261	6,830,189 – 6,830,305	+	12	118	86.21	-2.40	0.93	0.993268
933	dm3.chr2L	6,851,951 – 6,852,115	- - - - - - - -	1262	6,851,951 – 6,852,071	+	5	120	74.20	-2.26	0.62	0.988238
936	dm3.chr2L	6,867,671 – 6,867,764	- - - intron="intron;ID=intron_CG10806:1_CG10806:2;Name=Nha1-in;Parent=FBtr0079374;parent_type=mRNA" - - - -	1271	6,867,671 – 6,867,762	+	7	116	60.43	-1.59	0.39	0.913429
937	dm3.chr2L	6,871,126 – 6,871,226	- - - - - - - -	1275	6,871,126 – 6,871,226	+	7	100	61.55	-3.40	0.23	0.996451
943	dm3.chr2L	6,920,716 – 6,920,856	- - - - - - - -	1281	6,920,716 – 6,920,856	+	12	142	97.18	-2.30	0.94	0.968118
944	dm3.chr2L	6,921,119 – 6,921,170	- - - intron="intron;ID=intron_FBgn0004838:1_FBgn0004838:5;Name=Hrb27C-in;Parent=FBtr0079346;parent_type=mRNA" - - - -	1283	6,921,119 – 6,921,170	-	6	51	88.50	-2.34	0.84	0.973703
946	dm3.chr2L	6,948,800 – 6,948,916	- - - - - - - -	1285	6,948,800 – 6,948,916	+	7	118	63.80	-2.05	0.32	0.963507
948	dm3.chr2L	6,956,300 – 6,956,480	- - - intron="intron;ID=intron_CG13775:1_CG13775:2;Name=CG13775-in;Parent=FBtr0079363;parent_type=mRNA" - - - -	1289	6,956,340 – 6,956,445	-	5	120	70.16	-1.81	0.49	0.911529
949	dm3.chr2L	6,983,289 – 6,983,547	- - CDS="CDS;ID=CDS_FBgn0031879:10_696;Name=uif-cds;Parent=FBtr0079354,FBtr0290119,FBtr0302162;parent_type=mRNA" - - - - -	1293	6,983,321 – 6,983,441	+	15	120	84.63	-2.71	0.56	0.978204
952	dm3.chr2L	7,010,367 – 7,010,502	- - - - - - - -	1297	7,010,367 – 7,010,469	-	5	105	84.93	-3.22	0.76	0.995970
952	dm3.chr2L	7,010,367 – 7,010,502	- - - - - - - -	1298	7,010,405 – 7,010,502	-	8	102	63.42	-2.48	0.44	0.998210
954	dm3.chr2L	7,035,000 – 7,035,094	- - - intron="intron;ID=intron_CG11266:11_CG11266:3;Name=CG11266-in;Parent=FBtr0089637;parent_type=mRNA" - - - -	1300	7,035,000 – 7,035,094	+	13	115	77.85	-2.28	0.73	0.995308
958	dm3.chr2L	7,118,349 – 7,118,404	- - - intron="intron;ID=intron_FBgn0085407:5_FBgn0085407:4;Name=Pvf3-in;Parent=FBtr0112611,FBtr0112612;parent_type=mRNA" - - - -	1306	7,118,349 – 7,118,404	+	9	55	89.63	-3.16	0.63	0.972110
959	dm3.chr2L	7,119,810 – 7,119,932	- - - intron="intron;ID=intron_FBgn0085407:6_FBgn0085407:5;Name=Pvf3-in;Parent=FBtr0112612;parent_type=mRNA" - - - -	1309	7,119,834 – 7,119,932	+	4	102	75.50	-1.96	0.65	0.934602
961	dm3.chr2L	7,129,843 – 7,129,897	- - - intron="intron;ID=intron_FBgn0085407:6_FBgn0085407:5;Name=Pvf3-in;Parent=FBtr0112612;parent_type=mRNA" - - - -	1311	7,129,843 – 7,129,897	-	6	70	58.65	-1.40	0.44	0.967225
963	dm3.chr2L	7,142,408 – 7,142,501	- - - - - - - -	1313	7,142,408 – 7,142,501	+	7	99	65.49	-1.33	0.45	0.935930
965	dm3.chr2L	7,151,959 – 7,152,054	- - - - - - - -	1316	7,151,959 – 7,152,054	-	4	120	71.69	-2.12	0.57	0.970570
969	dm3.chr2L	7,169,226 – 7,169,404	- - - - - - - -	1323	7,169,258 – 7,169,374	-	8	117	92.39	-2.68	0.90	0.989379
971	dm3.chr2L	7,198,539 – 7,198,643	- - - intron="intron;ID=intron_CG4502:1_CG4502:7;Name=CG4502-in;Parent=FBtr0079417;parent_type=mRNA" - - - -	1326	7,198,539 – 7,198,643	+	8	119	59.46	-2.03	0.30	0.961311
974	dm3.chr2L	7,210,458 – 7,210,568	- - - intron="intron;ID=intron_FBgn0031897:7_FBgn0031897:5;Name=CG13784-in;Parent=FBtr0110799;parent_type=mRNA" - - - -	1330	7,210,458 – 7,210,555	+	7	110	75.13	-2.97	0.33	0.932384
				1331	7,210,458 – 7,210,555	-	7	110	75.13	-3.33	0.30	0.961159
				1332	7,210,466 – 7,210,568	+	6	115	80.52	-2.95	0.64	0.993987
				1333	7,210,466 – 7,210,568	-	6	115	80.52	-3.58	0.59	0.998206
982	dm3.chr2L	7,301,920 – 7,302,014	- - - - - - - -	1342	7,301,920 – 7,302,014	+	12	115	72.24	-2.43	0.34	0.905057
987	dm3.chr2L	7,356,439 – 7,356,535	- - - - - - - -	1348	7,356,439 – 7,356,535	+	6	100	84.78	-2.39	0.68	0.939394
989	dm3.chr2L	7,370,568 – 7,370,658	- - - intron="intron;ID=intron_FBgn0031903:3_FBgn0031903:4;Name=Wnt10-in;Parent=FBtr0303207;parent_type=mRNA" - - - -	1350	7,370,568 – 7,370,658	-	7	107	69.68	-1.63	0.50	0.940593
990	dm3.chr2L	7,370,715 – 7,370,771	- - - intron="intron;ID=intron_FBgn0031903:3_FBgn0031903:4;Name=Wnt10-in;Parent=FBtr0303207;parent_type=mRNA" - - - -	1352	7,370,715 – 7,370,771	-	12	59	84.05	-2.29	0.57	0.914769
991	dm3.chr2L	7,373,439 – 7,373,540	- - - intron="intron;ID=intron_FBgn0031903:3_FBgn0031903:4;Name=Wnt10-in;Parent=FBtr0303207;parent_type=mRNA" - - - -	1353	7,373,439 – 7,373,540	+	6	115	82.71	-2.66	0.64	0.969715
991	dm3.chr2L	7,373,439 – 7,373,540		1354	7,373,439 – 7,373,540	-	6	115	82.71	-5.07	0.71	0.999699
992	dm3.chr2L	7,374,267 – 7,374,391	- - - intron="intron;ID=intron_FBgn0031903:3_FBgn0031903:4;Name=Wnt10-in;Parent=FBtr0303207;parent_type=mRNA" - - - -	1357	7,374,301 – 7,374,391	-	10	101	82.30	-3.09	0.59	0.991221
993	dm3.chr2L	7,388,284 – 7,388,381	- - - - - - - -	1358	7,388,284 – 7,388,381	-	6	98	61.44	-2.72	0.40	0.999275
998	dm3.chr2L	7,425,800 – 7,425,876	FBnoncoding="pre_miRNA;ID=FBtr0304472;Name=mir-275-RM;Parent=FBgn0262453;Alias=CR43020-RM;Dbxref=FlyBase_Annotation_IDs:CR43020-RM,miRBase:MI0000356" - - - "Rfam_10.0=RF00757;mir-275;AAKO01000986.1/85073-85163\|3.2e-34" "Noncode_2.0=n178702_u177800_NW_045834_miRNA_Anopheles\|2.3e-07" "unique_Noncode_2.0=u177800_miRNA_Anopheles\|2.0e-07" "mirBase_v16=dya-mir-275\|2.6e-38"	1363	7,425,800 – 7,425,876	+	15	82	78.75	-3.21	0.75	0.999527
998	dm3.chr2L	7,425,800 – 7,425,876		1364	7,425,800 – 7,425,876	-	15	82	78.75	-2.30	0.71	0.996786
1000	dm3.chr2L	7,436,362 – 7,436,415	- - - - - - - -	1366	7,436,362 – 7,436,415	+	3	59	82.46	-2.27	0.95	0.990863
1002	dm3.chr2L	7,459,978 – 7,460,080	- - CDS="CDS;ID=CDS_FBgn0045495:6_774;Name=Gr28b-cds;Parent=FBtr0079459;parent_type=mRNA" - - - - -	1369	7,459,978 – 7,460,080	+	3	120	59.65	-1.81	0.53	0.958818
1005	dm3.chr2L	7,486,291 – 7,486,348	- - - intron="intron;ID=intron_FBgn0260486:13_FBgn0260486:12;Name=CG42533-in;Parent=FBtr0300897;parent_type=mRNA" - - - -	1372	7,486,291 – 7,486,348	-	5	65	65.44	-2.76	0.35	0.984592
1006	dm3.chr2L	7,495,506 – 7,495,611	- - CDS="CDS;ID=CDS_FBgn0260486:13_757;Name=CG42533-cds;Parent=FBtr0300897;parent_type=mRNA" - - - - -	1373	7,495,506 – 7,495,611	+	14	105	80.46	-2.93	0.37	0.943252
1009	dm3.chr2L	7,503,245 – 7,503,325	- - - intron="intron;ID=intron_FBgn0085403:4_FBgn0085403:3;Name=Rapgap1-in;Parent=FBtr0112606;parent_type=mRNA" - - - -	1376	7,503,245 – 7,503,325	+	6	85	87.43	-3.32	0.87	0.997766
1013	dm3.chr2L	7,551,170 – 7,551,263	- - - - - - - -	1380	7,551,170 – 7,551,263	+	9	108	63.09	-1.91	0.29	0.900676
1016	dm3.chr2L	7,597,735 – 7,597,836	- - - - - - - -	1384	7,597,735 – 7,597,836	-	9	112	76.57	-2.09	0.55	0.954229
1017	dm3.chr2L	7,600,921 – 7,601,012	- - - - - - - -	1385	7,600,921 – 7,601,012	+	5	93	75.19	-2.18	0.69	0.987025
1028	dm3.chr2L	7,668,613 – 7,668,706	- - - intron="intron;ID=intron_FBgn0040299:1_FBgn0040299:3;Name=Myo28B1-in;Parent=FBtr0079473,FBtr0079474;parent_type=mRNA" - - - -	1402	7,668,613 – 7,668,706	-	7	112	63.83	-1.46	0.44	0.948609
1031	dm3.chr2L	7,672,198 – 7,672,296	- - - intron="intron;ID=intron_FBgn0040299:1_FBgn0040299:3;Name=Myo28B1-in;Parent=FBtr0079473,FBtr0079474;parent_type=mRNA" - - - -	1405	7,672,198 – 7,672,296	+	6	103	89.83	-2.54	0.77	0.948552
1033	dm3.chr2L	7,679,886 – 7,679,980	- - - intron="intron;ID=intron_FBgn0040299:2_FBgn0040299:3;Name=Myo28B1-in;Parent=FBtr0079475,FBtr0079476;parent_type=mRNA" - - - -	1407	7,679,886 – 7,679,980	-	11	111	65.76	-1.38	0.49	0.951501
1035	dm3.chr2L	7,740,557 – 7,740,654	- - - - - - - -	1409	7,740,557 – 7,740,652	-	8	102	75.53	-2.45	0.64	0.993721
1035	dm3.chr2L	7,740,557 – 7,740,654	- - - - - - - -	1410	7,740,557 – 7,740,654	-	8	104	74.73	-2.35	0.64	0.993733
1040	dm3.chr2L	7,824,277 – 7,824,369	- - CDS="CDS;ID=CDS_FBgn0027515:5_782;Name=CG7115-cds;Parent=FBtr0079523,FBtr0079524;parent_type=mRNA" - - - - -	1416	7,824,277 – 7,824,369	-	15	108	66.51	-1.02	0.54	0.974164
1042	dm3.chr2L	7,833,692 – 7,833,785	- - - - - - - -	1418	7,833,692 – 7,833,785	+	8	95	65.95	-2.34	0.38	0.993947
1043	dm3.chr2L	7,833,861 – 7,833,977	- - - - - - - -	1419	7,833,861 – 7,833,952	-	10	117	80.26	-2.52	0.51	0.919236
1043	dm3.chr2L	7,833,861 – 7,833,977	- - - - - - - -	1420	7,833,876 – 7,833,977	+	9	119	74.65	-2.34	0.48	0.985426
1044	dm3.chr2L	7,844,698 – 7,844,823	- - - - - - - -	1422	7,844,728 – 7,844,823	+	6	104	75.91	-2.35	0.49	0.940322
1044	dm3.chr2L	7,844,698 – 7,844,823	- - - - - - - -	1423	7,844,728 – 7,844,823	-	6	104	75.91	-2.64	0.54	0.988799
1048	dm3.chr2L	7,870,953 – 7,871,081	- - - intron="intron;ID=intron_CG7105:1_CG7105:2;Name=Proct-in;Parent=FBtr0079562;parent_type=mRNA" - - - -	1428	7,870,953 – 7,871,051	+	5	102	92.67	-2.96	0.89	0.991932
1048	dm3.chr2L	7,870,953 – 7,871,081		1429	7,870,953 – 7,871,051	-	5	102	92.67	-2.57	0.90	0.982696
1049	dm3.chr2L	7,883,141 – 7,883,203	- - - - - - - -	1432	7,883,141 – 7,883,203	-	6	62	82.58	-2.07	0.80	0.973068
1050	dm3.chr2L	7,899,603 – 7,899,693	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1433	7,899,603 – 7,899,693	+	5	102	88.82	-2.37	0.83	0.957952
1054	dm3.chr2L	7,915,695 – 7,915,748	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1440	7,915,695 – 7,915,748	+	5	53	87.36	-1.16	1.00	0.914919
1056	dm3.chr2L	7,936,059 – 7,936,151	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1442	7,936,059 – 7,936,151	+	6	112	58.70	-2.21	0.31	0.971703
1059	dm3.chr2L	7,947,154 – 7,947,247	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1446	7,947,154 – 7,947,247	-	5	109	76.37	-3.18	0.61	0.997719
1061	dm3.chr2L	7,954,018 – 7,954,116	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1449	7,954,018 – 7,954,116	-	5	106	71.23	-2.45	0.65	0.996656
1062	dm3.chr2L	7,957,956 – 7,958,065	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1450	7,957,956 – 7,958,065	+	4	121	66.67	-2.33	0.49	0.984845
1062	dm3.chr2L	7,957,956 – 7,958,065		1451	7,957,956 – 7,958,065	-	4	121	66.67	-2.31	0.39	0.913522
1063	dm3.chr2L	7,962,603 – 7,962,700	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:4;Name=Snoo-in;Parent=FBtr0112720;parent_type=mRNA" - - - -	1452	7,962,603 – 7,962,700	+	8	103	71.85	-2.50	0.48	0.993804
1064	dm3.chr2L	7,993,439 – 7,993,530	- - - intron="intron;ID=intron_FBgn0031969:5_FBgn0031969:4;Name=pes-in;Parent=FBtr0114550;parent_type=mRNA" - - - -	1453	7,993,439 – 7,993,530	-	10	109	66.39	-1.78	0.42	0.936212
1067	dm3.chr2L	8,044,716 – 8,044,830	- - - intron="intron;ID=intron_CG7466:2_CG7466:3;Name=CG7466-in;Parent=FBtr0079541;parent_type=mRNA" - - - -	1457	8,044,716 – 8,044,830	+	8	114	69.61	-1.17	0.60	0.925276
1068	dm3.chr2L	8,052,511 – 8,052,631	- - CDS="CDS;ID=CDS_CG7466:6_722;Name=CG7466-cds;Parent=FBtr0079541;parent_type=mRNA" - - - - -	1458	8,052,511 – 8,052,631	+	12	120	82.85	-2.59	0.73	0.994139
1069	dm3.chr2L	8,060,768 – 8,060,874	- - CDS="CDS;ID=CDS_CG14472:8_705;Name=poe-cds;Parent=FBtr0079545;parent_type=mRNA" - - - - -	1459	8,060,768 – 8,060,874	+	14	106	73.57	-2.04	0.36	0.913259
1075	dm3.chr2L	8,106,185 – 8,106,359	- - - intron="intron;ID=intron_FBgn0011219:10_FBgn0011219:11;Name=Bsg-in;Parent=FBtr0079570,FBtr0079568,FBtr0079569,FBtr0079574,FBtr0079573,FBtr0079567,FBtr0079571,FBtr0079572,FBtr0079566;parent_type=mRNA" - - - -	1466	8,106,300 – 8,106,359	-	5	59	97.97	-1.75	1.00	0.951638
1076	dm3.chr2L	8,109,700 – 8,109,790	- - - intron="intron;ID=intron_FBgn0011219:14_FBgn0011219:16;Name=Bsg-in;Parent=FBtr0079574;parent_type=mRNA" - - - -	1467	8,109,700 – 8,109,790	-	7	91	87.77	-2.18	0.82	0.945588
1077	dm3.chr2L	8,113,620 – 8,113,811	- - - - - - - -	1470	8,113,753 – 8,113,811	-	5	58	97.24	-2.02	0.95	0.941834
1079	dm3.chr2L	8,115,870 – 8,116,062	- - - - - - - -	1473	8,115,942 – 8,116,038	+	7	105	85.83	-1.80	0.99	0.983478
				1474	8,115,965 – 8,116,062	+	6	103	91.73	-1.31	1.00	0.920215
				1475	8,115,965 – 8,116,062	-	6	103	91.73	-2.05	1.00	0.987490
1081	dm3.chr2L	8,127,864 – 8,127,914	- - - intron="intron;ID=intron_FBgn0031988:1_FBgn0031988:2;Name=CG8668-in;Parent=FBtr0079576;parent_type=mRNA" - - - -	1477	8,127,864 – 8,127,914	+	5	50	92.80	-2.39	0.88	0.963650
1082	dm3.chr2L	8,128,946 – 8,129,104	- - - intron="intron;ID=intron_FBgn0031988:1_FBgn0031988:2;Name=CG8668-in;Parent=FBtr0079576;parent_type=mRNA" - - - -	1479	8,128,946 – 8,129,064	+	3	121	66.57	-2.41	0.51	0.975148
1087	dm3.chr2L	8,154,691 – 8,154,822	- - - intron="intron;ID=intron_FBgn0051607:4_FBgn0051607:5;Name=CG31607-in;Parent=FBtr0079579;parent_type=mRNA" - - - -	1486	8,154,691 – 8,154,804	+	5	120	91.62	-2.68	0.88	0.985375
1087	dm3.chr2L	8,154,691 – 8,154,822		1487	8,154,691 – 8,154,804	-	5	120	91.62	-3.23	0.79	0.989199
1088	dm3.chr2L	8,155,637 – 8,155,739	- - - - - - - -	1489	8,155,637 – 8,155,739	+	7	112	56.38	-2.88	0.50	0.999950
1088	dm3.chr2L	8,155,637 – 8,155,739	- - - - - - - -	1490	8,155,637 – 8,155,739	-	7	112	56.38	-2.86	0.31	0.999127
1092	dm3.chr2L	8,178,154 – 8,178,261	- - CDS="CDS;ID=CDS_FBgn0031993:13_841;Name=CG8486-cds;Parent=FBtr0300333;parent_type=mRNA" - - - - -	1494	8,178,154 – 8,178,261	+	13	117	78.57	-2.99	0.57	0.998248
1093	dm3.chr2L	8,193,006 – 8,193,181	- - - intron="intron;ID=intron_FBgn0031995:5_FBgn0031995:4;Name=CG8475-in;Parent=FBtr0079638;parent_type=mRNA" - - - -	1495	8,193,006 – 8,193,110	-	12	116	62.96	-1.35	0.45	0.984060
1097	dm3.chr2L	8,220,279 – 8,220,331	- - CDS="CDS;ID=CDS_FBgn0032005:7_878;Name=Snx6-cds;Parent=FBtr0306170;parent_type=mRNA" - - - - -	1500	8,220,279 – 8,220,331	-	5	52	85.77	-2.22	0.73	0.915921
1103	dm3.chr2L	8,290,681 – 8,290,806	FBnoncoding="tRNA;ID=FBtr0079596;Name=tRNA:K5:29A-RA;Parent=FBgn0011902;Dbxref=FlyBase_Annotation_IDs:CR31899-RA;score_text=Weakly" tRNAscann="Lys_chr2L_trna11" - intron="intron;ID=intron_FBgn0003502:17_FBgn0003502:16;Name=Btk29A-in;Parent=FBtr0079616,FBtr0079617,FBtr0112836;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAJJ01001092.1/1840-1912\|1.5e-34" - - -	1506	8,290,681 – 8,290,806	+	13	146	70.93	-1.80	0.67	0.996861
1103	dm3.chr2L	8,290,681 – 8,290,806		1507	8,290,681 – 8,290,806	-	13	146	70.93	-1.74	0.60	0.993736
1104	dm3.chr2L	8,292,728 – 8,292,780	- - - intron="intron;ID=intron_FBgn0003502:17_FBgn0003502:16;Name=Btk29A-in;Parent=FBtr0079616,FBtr0079617,FBtr0112836;parent_type=mRNA" - - - -	1508	8,292,728 – 8,292,780	-	7	57	85.48	-1.58	0.98	0.968434
1106	dm3.chr2L	8,297,985 – 8,298,054	- - - intron="intron;ID=intron_FBgn0003502:17_FBgn0003502:16;Name=Btk29A-in;Parent=FBtr0079616,FBtr0079617,FBtr0112836;parent_type=mRNA" - - - -	1510	8,297,985 – 8,298,054	+	5	74	66.19	-1.23	0.54	0.909077
1107	dm3.chr2L	8,301,820 – 8,301,919	- - - intron="intron;ID=intron_CG7870:3_CG7870:4;Name=wol-in;Parent=FBtr0079614;parent_type=mRNA" - - - -	1511	8,301,820 – 8,301,919	-	12	110	61.09	-0.60	0.56	0.969157
1112	dm3.chr2L	8,364,601 – 8,364,697	- - - - - - - -	1517	8,364,601 – 8,364,697	-	6	100	81.08	-2.06	0.64	0.927598
1113	dm3.chr2L	8,371,018 – 8,371,152	- - - intron="intron;ID=intron_FBgn0032029:1_FBgn0032029:3;Name=CG17292-in;Parent=FBtr0079648;parent_type=mRNA" - - - -	1518	8,371,018 – 8,371,119	+	7	106	57.17	-0.61	0.51	0.905739
				1519	8,371,018 – 8,371,119	-	7	106	57.17	-1.00	0.46	0.943596
				1520	8,371,054 – 8,371,152	+	6	105	59.93	-1.66	0.35	0.916850
1114	dm3.chr2L	8,377,893 – 8,377,943	- - CDS="CDS;ID=CDS_FBgn0032032:4_841;Name=CG17294-cds;Parent=FBtr0079651;parent_type=mRNA" - - - - -	1521	8,377,893 – 8,377,943	-	12	56	68.13	-0.99	0.54	0.921654
1116	dm3.chr2L	8,408,166 – 8,408,271	- - - - - - - -	1523	8,408,166 – 8,408,271	+	12	116	71.41	-1.45	0.55	0.963893
1117	dm3.chr2L	8,417,699 – 8,417,794	- - - intron="intron;ID=intron_CG13388:1_CG13388:2;Name=Akap200-in;Parent=FBtr0079664,FBtr0079667;parent_type=mRNA" - - - -	1524	8,417,699 – 8,417,794	+	7	109	70.88	-1.65	0.63	0.983044
1117	dm3.chr2L	8,417,699 – 8,417,794		1525	8,417,699 – 8,417,794	-	7	109	70.88	-1.73	0.70	0.992110
1118	dm3.chr2L	8,421,236 – 8,421,386	- - - intron="intron;ID=intron_CG13388:7_CG13388:2;Name=Akap200-in;Parent=FBtr0079665;parent_type=mRNA" - - - -	1526	8,421,236 – 8,421,337	+	3	101	79.93	-3.54	0.42	0.956526
1118	dm3.chr2L	8,421,236 – 8,421,386		1527	8,421,278 – 8,421,386	+	3	108	84.21	-3.71	0.53	0.984219
1119	dm3.chr2L	8,421,616 – 8,421,755	- - - intron="intron;ID=intron_CG13388:7_CG13388:2;Name=Akap200-in;Parent=FBtr0079665;parent_type=mRNA" - - - -	1529	8,421,616 – 8,421,717	+	8	116	80.09	-2.92	0.42	0.911806
1119	dm3.chr2L	8,421,616 – 8,421,755		1530	8,421,616 – 8,421,717	-	8	116	80.09	-3.31	0.50	0.991814
1121	dm3.chr2L	8,425,865 – 8,425,957	- - - intron="intron;ID=intron_CG13388:7_CG13388:2;Name=Akap200-in;Parent=FBtr0079665;parent_type=mRNA" - - - -	1534	8,425,865 – 8,425,957	-	4	96	79.50	-1.18	0.97	0.927174
1123	dm3.chr2L	8,443,771 – 8,443,848	- - CDS="CDS;ID=CDS_FBgn0051897:1_774;Name=CG31897-cds;Parent=FBtr0079673;parent_type=mRNA" - - - - -	1536	8,443,771 – 8,443,848	-	6	78	61.11	-1.38	0.43	0.963151
1124	dm3.chr2L	8,444,871 – 8,445,009	- - CDS="CDS;ID=CDS_FBgn0051897:1_774;Name=CG31897-cds;Parent=FBtr0079673;parent_type=mRNA" - - - - -	1538	8,444,889 – 8,445,009	-	7	120	69.68	-1.41	0.48	0.920008
1125	dm3.chr2L	8,463,960 – 8,464,084	- - - - - - - -	1541	8,463,991 – 8,464,084	+	4	119	72.96	-1.91	0.64	0.919086
1125	dm3.chr2L	8,463,960 – 8,464,084	- - - - - - - -	1542	8,463,991 – 8,464,084	-	4	119	72.96	-2.65	0.75	0.996178
1126	dm3.chr2L	8,470,383 – 8,470,502	- - - intron="intron;ID=intron_FBgn0262029:1_FBgn0262029:2;Name=d-in;Parent=FBtr0303924;parent_type=mRNA" - - - -	1543	8,470,383 – 8,470,502	+	5	143	70.43	-2.51	0.53	0.987682
1128	dm3.chr2L	8,481,770 – 8,481,862	FBnoncoding="tRNA;ID=FBtr0079677;Name=tRNA:CR31896-RA;Parent=FBgn0051896;Alias=CR31896-RA;Dbxref=FlyBase_Annotation_IDs:CR31896-RA;score_text=Weakly" tRNAscann="Asp_chr2L_trna12" - intron="intron;ID=intron_FBgn0262029:4_FBgn0262029:7;Name=d-in;Parent=FBtr0303923;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010887279.1/1267-1338\|5.9e-27" "Noncode_2.0=n112842_u111940_DQ604839_piRNA_Norway\|7.4e-08" "unique_Noncode_2.0=u111940_piRNA_Norway\|6.4e-08" -	1546	8,481,770 – 8,481,862	+	11	95	72.66	-1.33	0.87	0.991777
1128	dm3.chr2L	8,481,770 – 8,481,862		1547	8,481,770 – 8,481,862	-	11	95	72.66	-1.00	0.83	0.982476
1130	dm3.chr2L	8,490,609 – 8,490,719	- - - - - - - -	1549	8,490,609 – 8,490,719	-	6	124	72.45	-2.18	0.45	0.930001
1132	dm3.chr2L	8,541,760 – 8,541,847	FBnoncoding="tRNA;ID=FBtr0079690;Name=tRNA:CR31603-RA;Parent=FBgn0051603;Alias=CR31603-RA;Dbxref=FlyBase_Annotation_IDs:CR31603-RA;score_text=Weakly" tRNAscann="Asp_chr2L_trna13" - - "Rfam_10.0=RF00005;tRNA;ABJB010887279.1/1267-1338\|5.5e-27" "Noncode_2.0=n112842_u111940_DQ604839_piRNA_Norway\|6.9e-08" "unique_Noncode_2.0=u111940_piRNA_Norway\|6.0e-08" -	1551	8,541,760 – 8,541,847	+	10	91	83.41	-1.31	0.98	0.959413
1141	dm3.chr2L	8,586,294 – 8,586,386	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1563	8,586,294 – 8,586,386	-	9	120	64.71	-2.44	0.27	0.913334
1143	dm3.chr2L	8,591,919 – 8,592,028	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1565	8,591,919 – 8,592,028	+	6	117	73.79	-2.33	0.43	0.919889
1144	dm3.chr2L	8,605,848 – 8,605,954	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1567	8,605,848 – 8,605,954	+	3	107	55.59	-1.40	0.56	0.951390
1150	dm3.chr2L	8,679,084 – 8,679,203	FBnoncoding="tRNA;ID=FBtr0079728;Name=tRNA:CR31889-RA;Parent=FBgn0051889;Alias=CR31889-RA;Dbxref=FlyBase_Annotation_IDs:CR31889-RA;score_text=Weakly" tRNAscann="Asp_chr2L_trna16" - intron="intron;ID=intron_CG9287:1_CG9287:2;Name=CG9287-in;Parent=FBtr0079753;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010887279.1/1267-1338\|8.1e-27" "Noncode_2.0=n112842_u111940_DQ604839_piRNA_Norway\|1.0e-07" "unique_Noncode_2.0=u111940_piRNA_Norway\|8.7e-08" -	1574	8,679,084 – 8,679,203	+	10	123	76.95	-1.15	0.80	0.939565
1150	dm3.chr2L	8,679,084 – 8,679,203		1575	8,679,084 – 8,679,203	-	10	123	76.95	-1.19	0.77	0.936586
1151	dm3.chr2L	8,698,014 – 8,698,172	- - - - - - - -	1576	8,698,014 – 8,698,132	+	6	118	77.53	-2.38	0.53	0.956894
1151	dm3.chr2L	8,698,014 – 8,698,172	- - - - - - - -	1577	8,698,052 – 8,698,172	+	6	120	80.48	-2.77	0.55	0.979304
1154	dm3.chr2L	8,703,736 – 8,703,830	- - - - - - - -	1582	8,703,736 – 8,703,830	-	10	109	77.87	-2.21	0.51	0.938086
1158	dm3.chr2L	8,732,721 – 8,732,825	- - - intron="intron;ID=intron_FBgn0003209:9_FBgn0003209:8;Name=raw-in;Parent=FBtr0079746,FBtr0303868;parent_type=mRNA" - - - -	1587	8,732,721 – 8,732,825	-	6	104	95.83	-4.02	0.88	0.997833
1160	dm3.chr2L	8,733,900 – 8,733,992	- - - intron="intron;ID=intron_FBgn0003209:9_FBgn0003209:8;Name=raw-in;Parent=FBtr0079746,FBtr0303868;parent_type=mRNA" - - - -	1589	8,733,900 – 8,733,992	+	6	117	68.51	-2.14	0.61	0.994357
1160	dm3.chr2L	8,733,900 – 8,733,992		1590	8,733,900 – 8,733,992	-	6	117	68.51	-1.53	0.65	0.972039
1161	dm3.chr2L	8,743,210 – 8,743,336	- - - - - - - -	1591	8,743,210 – 8,743,313	+	12	117	71.05	-1.32	0.57	0.931454
1171	dm3.chr2L	8,805,733 – 8,805,845	- - - - - - - -	1604	8,805,733 – 8,805,845	-	6	113	93.59	-2.64	0.86	0.974540
1173	dm3.chr2L	8,812,315 – 8,812,417	- - - - - - - -	1606	8,812,315 – 8,812,417	+	11	113	74.09	-1.07	0.68	0.910619
1174	dm3.chr2L	8,822,341 – 8,822,439	- - - - - - - -	1607	8,822,341 – 8,822,439	-	11	106	92.93	-1.67	0.99	0.965090
1180	dm3.chr2L	8,861,096 – 8,861,222	- - - - - - - -	1613	8,861,096 – 8,861,191	+	11	111	79.95	-1.89	0.82	0.982522
1184	dm3.chr2L	8,869,593 – 8,869,650	- - - - - - - -	1618	8,869,593 – 8,869,650	+	4	57	57.44	-1.12	0.53	0.947562
1184	dm3.chr2L	8,869,593 – 8,869,650	- - - - - - - -	1619	8,869,593 – 8,869,650	-	4	57	57.44	-1.01	0.58	0.960626
1185	dm3.chr2L	8,876,054 – 8,876,169	- - - - - - - -	1620	8,876,054 – 8,876,169	+	10	120	66.61	-1.10	0.52	0.931742
1186	dm3.chr2L	8,879,431 – 8,879,523	- - - - - - - -	1622	8,879,431 – 8,879,523	-	11	122	66.38	-2.23	0.46	0.991417
1190	dm3.chr2L	8,917,581 – 8,917,635	- - - intron="intron;ID=intron_FBgn0085427:6_FBgn0085427:7;Name=CG34398-in;Parent=FBtr0112648,FBtr0112649,FBtr0303890,FBtr0303893,FBtr0303894;parent_type=mRNA" - - - -	1627	8,917,581 – 8,917,635	-	5	54	93.70	-2.39	0.98	0.990728
1194	dm3.chr2L	8,975,288 – 8,975,383	- - - - - - - -	1632	8,975,288 – 8,975,383	+	3	97	87.94	-2.43	0.77	0.901868
1195	dm3.chr2L	8,988,266 – 8,988,378	- - - intron="intron;ID=intron_CG9552:1_CG9552:2;Name=rost-in;Parent=FBtr0079782;parent_type=mRNA" - - - -	1633	8,988,266 – 8,988,378	-	6	116	80.53	-2.58	0.64	0.984976
1198	dm3.chr2L	9,023,833 – 9,023,931	- - - - - - - -	1636	9,023,833 – 9,023,931	-	5	99	84.19	-3.14	0.77	0.995337
1200	dm3.chr2L	9,049,865 – 9,049,959	- - - - - - - -	1639	9,049,865 – 9,049,959	+	6	100	82.47	-2.22	0.80	0.979444
1206	dm3.chr2L	9,114,444 – 9,114,534	- - - - - - - -	1645	9,114,444 – 9,114,534	-	10	100	69.27	-1.44	0.51	0.959602
1207	dm3.chr2L	9,119,579 – 9,119,675	- - - - - - - -	1646	9,119,579 – 9,119,675	+	12	106	67.02	-2.00	0.35	0.950917
1207	dm3.chr2L	9,119,579 – 9,119,675	- - - - - - - -	1647	9,119,579 – 9,119,675	-	12	106	67.02	-2.26	0.30	0.940239
1211	dm3.chr2L	9,156,354 – 9,156,476	- - - intron="intron;ID=intron_FBgn0052982:6_FBgn0052982:7;Name=CG32982-in;Parent=FBtr0110960,FBtr0079771,FBtr0301039,FBtr0301040,FBtr0303888;parent_type=mRNA" - - - -	1652	9,156,354 – 9,156,449	+	6	98	63.80	-1.64	0.40	0.933661
1211	dm3.chr2L	9,156,354 – 9,156,476		1653	9,156,354 – 9,156,449	-	6	98	63.80	-2.84	0.45	0.999454
1213	dm3.chr2L	9,195,211 – 9,195,330	- - - intron="intron;ID=intron_FBgn0041092:5_FBgn0041092:6;Name=tai-in;Parent=FBtr0303870,FBtr0303871,FBtr0303872,FBtr0303873,FBtr0304974;parent_type=mRNA" - - - -	1656	9,195,211 – 9,195,330	+	8	120	73.98	-1.27	0.67	0.925693
1219	dm3.chr2L	9,234,095 – 9,234,209	- - CDS="CDS;ID=CDS_FBgn0041092:6_857;Name=tai-cds;Parent=FBtr0304974;parent_type=mRNA" - - - - -	1664	9,234,095 – 9,234,209	-	4	120	73.42	-1.51	0.71	0.905947
1221	dm3.chr2L	9,236,519 – 9,236,604	FBnoncoding="tRNA;ID=FBtr0079820;Name=tRNA:CR31885-RA;Parent=FBgn0051885;Alias=CR31885-RA;Dbxref=FlyBase_Annotation_IDs:CR31885-RA;score_text=Weakly" tRNAscann="Thr_chr2L_trna29" - intron="intron;ID=intron_FBgn0041092:7_FBgn0041092:8;Name=tai-in;Parent=FBtr0303870,FBtr0303871,FBtr0303872,FBtr0303873,FBtr0304974;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAJJ01000411.1/14125-14198\|8.4e-26" - - "mirBase_v16=hsa-mir-3676\|3.5e-16"	1666	9,236,519 – 9,236,604	+	12	85	91.71	-1.63	0.92	0.912472
1222	dm3.chr2L	9,253,105 – 9,253,157	- - - intron="intron;ID=intron_FBgn0028433:1_FBgn0028433:7;Name=Ggamma30A-in;Parent=FBtr0301856;parent_type=mRNA" - - - -	1667	9,253,105 – 9,253,157	+	6	57	67.23	-1.10	0.55	0.914116
1224	dm3.chr2L	9,280,764 – 9,280,898	- - - intron="intron;ID=intron_FBgn0028433:8_FBgn0028433:10;Name=Ggamma30A-in;Parent=FBtr0079795,FBtr0079796,FBtr0079797,FBtr0301856,FBtr0303895;parent_type=mRNA" - - - -	1670	9,280,764 – 9,280,862	+	5	98	86.41	-2.02	0.84	0.940113
1224	dm3.chr2L	9,280,764 – 9,280,898		1671	9,280,764 – 9,280,862	-	5	98	86.41	-2.19	0.77	0.916220
1225	dm3.chr2L	9,285,833 – 9,285,923	- - - intron="intron;ID=intron_FBgn0028433:8_FBgn0028433:10;Name=Ggamma30A-in;Parent=FBtr0079795,FBtr0079796,FBtr0079797,FBtr0301856,FBtr0303895;parent_type=mRNA" - - - -	1673	9,285,833 – 9,285,923	+	4	93	81.06	-2.81	0.61	0.973155
1234	dm3.chr2L	9,369,884 – 9,369,978	- - - - - - - -	1683	9,369,884 – 9,369,978	+	9	95	75.30	-2.69	0.57	0.998076
1238	dm3.chr2L	9,392,939 – 9,393,060	- - - - - - - -	1688	9,392,939 – 9,393,045	-	8	117	66.76	-1.69	0.69	0.997563
1238	dm3.chr2L	9,392,939 – 9,393,060	- - - - - - - -	1689	9,392,970 – 9,393,060	-	12	118	70.83	-1.31	0.59	0.917016
1239	dm3.chr2L	9,394,701 – 9,394,806	- - - - - - - -	1690	9,394,701 – 9,394,806	-	3	109	50.00	-1.80	0.33	0.915785
1240	dm3.chr2L	9,398,297 – 9,398,430	- - - - - - - -	1693	9,398,324 – 9,398,430	-	6	112	82.48	-2.27	0.73	0.971073
1246	dm3.chr2L	9,417,570 – 9,417,672	- - - intron="intron;ID=intron_FBgn0032116:3_FBgn0032116:4;Name=CG3759-in;Parent=FBtr0303896;parent_type=mRNA" - - - -	1699	9,417,570 – 9,417,672	-	6	111	73.05	-1.64	0.59	0.935451
1248	dm3.chr2L	9,446,831 – 9,446,923	- - - - - - - -	1701	9,446,831 – 9,446,923	+	5	99	87.07	-2.67	0.75	0.977125
1249	dm3.chr2L	9,463,507 – 9,463,604	- - - - - - - -	1702	9,463,507 – 9,463,604	+	4	97	84.36	-2.46	0.85	0.986987
1249	dm3.chr2L	9,463,507 – 9,463,604	- - - - - - - -	1703	9,463,507 – 9,463,604	-	4	97	84.36	-1.93	0.80	0.905016
1251	dm3.chr2L	9,467,652 – 9,467,743	- - - - - - - -	1705	9,467,652 – 9,467,743	+	5	100	83.56	-2.42	0.69	0.947884
1251	dm3.chr2L	9,467,652 – 9,467,743	- - - - - - - -	1706	9,467,652 – 9,467,743	-	5	100	83.56	-2.45	0.63	0.910146
1253	dm3.chr2L	9,497,971 – 9,498,074	- - - intron="intron;ID=intron_FBgn0032120:4_FBgn0032120:5;Name=CG33298-in;Parent=FBtr0301064,FBtr0301065;parent_type=mRNA" - - - -	1708	9,497,971 – 9,498,074	-	6	124	63.33	-1.23	0.51	0.947606
1254	dm3.chr2L	9,499,486 – 9,499,557	- - - intron="intron;ID=intron_FBgn0032120:4_FBgn0032120:5;Name=CG33298-in;Parent=FBtr0301064,FBtr0301065;parent_type=mRNA" - - - -	1710	9,499,486 – 9,499,557	-	6	84	80.81	-2.12	0.66	0.950854
1255	dm3.chr2L	9,503,871 – 9,503,971	- - CDS="CDS;ID=CDS_FBgn0032120:5_788;Name=CG33298-cds;Parent=FBtr0301064,FBtr0301065;parent_type=mRNA" - - - - -	1711	9,503,871 – 9,503,971	+	6	103	81.06	-1.61	0.77	0.906081
1257	dm3.chr2L	9,527,929 – 9,528,031	- - - intron="intron;ID=intron_FBgn0032123:4_FBgn0032123:5;Name=Oatp30B-in;Parent=FBtr0079825,FBtr0079826,FBtr0301909;parent_type=mRNA" - - - -	1713	9,527,929 – 9,528,031	+	4	104	97.26	-2.47	0.99	0.989789
1257	dm3.chr2L	9,527,929 – 9,528,031		1714	9,527,929 – 9,528,031	-	4	104	97.26	-2.34	0.91	0.944513
1260	dm3.chr2L	9,582,238 – 9,582,370	- - - - - - - -	1717	9,582,238 – 9,582,337	-	7	101	68.31	-1.71	0.52	0.984566
1262	dm3.chr2L	9,617,896 – 9,618,012	- - - intron="intron;ID=intron_FBgn0032135:3_FBgn0032135:4;Name=GlcAT-S-in;Parent=FBtr0302199;parent_type=mRNA" - - - -	1721	9,617,905 – 9,618,012	+	6	120	81.26	-2.12	0.65	0.908957
1267	dm3.chr2L	9,632,716 – 9,632,809	- - - - - - - -	1727	9,632,716 – 9,632,809	-	7	105	62.71	-1.59	0.51	0.994312
1268	dm3.chr2L	9,640,837 – 9,640,947	- - - intron="intron;ID=intron_FBgn0032136:1_FBgn0032136:2;Name=CG15828-in;Parent=FBtr0303874;parent_type=mRNA" - - - -	1728	9,640,837 – 9,640,947	+	4	111	77.98	-2.17	0.63	0.930573
1269	dm3.chr2L	9,662,729 – 9,662,792	- - - - - - - -	1729	9,662,729 – 9,662,792	+	8	63	80.99	-2.40	0.74	0.993361
1270	dm3.chr2L	9,669,393 – 9,669,475	- - - - - - - -	1730	9,669,393 – 9,669,475	+	6	82	86.51	-3.34	0.77	0.996646
1271	dm3.chr2L	9,673,751 – 9,673,848	- - - - - - - -	1732	9,673,751 – 9,673,848	-	6	97	76.67	-1.95	0.59	0.934608
1272	dm3.chr2L	9,674,793 – 9,674,894	- - - - - - - -	1733	9,674,793 – 9,674,894	+	3	101	83.22	-2.16	0.86	0.962332
1276	dm3.chr2L	9,732,560 – 9,732,654	- - - intron="intron;ID=intron_FBgn0028704:9_FBgn0028704:8;Name=Nckx30C-in;Parent=FBtr0079926,FBtr0079928,FBtr0303908;parent_type=mRNA" - - - -	1738	9,732,560 – 9,732,654	+	8	110	91.52	-2.01	0.88	0.925917
1276	dm3.chr2L	9,732,560 – 9,732,654		1739	9,732,560 – 9,732,654	-	8	110	91.52	-1.62	0.99	0.959739
1277	dm3.chr2L	9,742,588 – 9,742,686	- - CDS="CDS;ID=CDS_FBgn0028704:12_847;Name=Nckx30C-cds;Parent=FBtr0303909;parent_type=mRNA" - - - - -	1740	9,742,588 – 9,742,686	+	6	110	66.79	-1.73	0.65	0.996085
1280	dm3.chr2L	9,754,368 – 9,754,420	- - - - - - - -	1743	9,754,368 – 9,754,420	+	3	52	92.31	-1.97	0.93	0.939298
1283	dm3.chr2L	9,793,438 – 9,793,543	- - - - - - - -	1748	9,793,438 – 9,793,543	-	9	114	83.59	-2.50	0.84	0.992941
1285	dm3.chr2L	9,807,995 – 9,808,045	- - - intron="intron;ID=intron_FBgn0032151:9_FBgn0032151:8;Name=nAcRalpha-30D-in;Parent=FBtr0079915,FBtr0079914,FBtr0079913,FBtr0079916,FBtr0079912,FBtr0303898;parent_type=mRNA" - - - -	1750	9,807,995 – 9,808,045	-	4	57	78.50	-3.25	0.75	0.997934
1291	dm3.chr2L	9,845,988 – 9,846,086	- - - intron="intron;ID=intron_FBgn0032151:14_FBgn0032151:13;Name=nAcRalpha-30D-in;Parent=FBtr0079915,FBtr0079914,FBtr0079913,FBtr0079916,FBtr0079912,FBtr0303898;parent_type=mRNA" - - - -	1757	9,845,988 – 9,846,086	+	9	110	65.17	-3.09	0.57	0.999926
1291	dm3.chr2L	9,845,988 – 9,846,086		1758	9,845,988 – 9,846,086	-	9	110	65.17	-4.18	0.73	0.999946
1294	dm3.chr2L	9,877,259 – 9,877,358	- - - - - - - -	1761	9,877,259 – 9,877,358	+	8	102	86.97	-2.94	0.73	0.987378
1294	dm3.chr2L	9,877,259 – 9,877,358	- - - - - - - -	1762	9,877,259 – 9,877,358	-	8	102	86.97	-2.35	0.76	0.948391
1295	dm3.chr2L	9,879,734 – 9,879,840	- - - intron="intron;ID=intron_FBgn0032151:17_FBgn0032151:15;Name=nAcRalpha-30D-in;Parent=FBtr0303898;parent_type=mRNA" - - - -	1763	9,879,734 – 9,879,840	-	11	116	73.26	-1.21	0.67	0.964987
1296	dm3.chr2L	9,882,824 – 9,882,928	- - - intron="intron;ID=intron_FBgn0032151:17_FBgn0032151:15;Name=nAcRalpha-30D-in;Parent=FBtr0303898;parent_type=mRNA" - - - -	1765	9,882,832 – 9,882,928	+	6	96	79.37	-2.31	0.61	0.971992
1297	dm3.chr2L	9,885,555 – 9,885,678	- - - intron="intron;ID=intron_FBgn0032151:17_FBgn0032151:15;Name=nAcRalpha-30D-in;Parent=FBtr0303898;parent_type=mRNA" - - - -	1766	9,885,555 – 9,885,651	-	9	112	74.50	-1.39	0.76	0.971538
1299	dm3.chr2L	9,917,448 – 9,917,650	- - CDS="CDS;ID=CDS_FBgn0025700:1_718;Name=CG5885-cds;Parent=FBtr0079900;parent_type=mRNA" - - - - -	1770	9,917,528 – 9,917,648	-	14	120	83.75	-3.10	0.52	0.988704
1299	dm3.chr2L	9,917,448 – 9,917,650		1771	9,917,530 – 9,917,650	-	14	120	84.25	-2.79	0.52	0.961803
1300	dm3.chr2L	9,950,405 – 9,950,551	FBnoncoding="pre_miRNA;ID=FBtr0304394;Name=mir-87-RM;Parent=FBgn0262428;Alias=CR42983-RM;Dbxref=FlyBase_Annotation_IDs:CR42983-RM,miRBase:MI0000382" - - - "Rfam_10.0=RF00726;mir-87;AASW01042897.1/1205-1302\|8.5e-49" - - "mirBase_v16=dme-mir-87\|1.0e-51"	1772	9,950,405 – 9,950,516	+	12	117	82.19	-2.15	0.81	0.988689
1300	dm3.chr2L	9,950,405 – 9,950,551		1773	9,950,405 – 9,950,516	-	12	117	82.19	-2.85	0.88	0.997912
1303	dm3.chr2L	9,971,616 – 9,971,764	- - - - - - - -	1779	9,971,654 – 9,971,764	+	4	111	85.89	-2.82	0.62	0.927593
1304	dm3.chr2L	9,975,542 – 9,975,649	- - - - - - - -	1780	9,975,542 – 9,975,649	+	3	107	55.14	-2.38	0.38	0.989428
1308	dm3.chr2L	10,082,095 – 10,082,206	- - - intron="intron;ID=intron_FBgn0032180:13_FBgn0032180:12;Name=CG31714-in;Parent=FBtr0113032;parent_type=mRNA" - - - -	1786	10,082,095 – 10,082,206	+	6	116	65.10	-1.62	0.48	0.964288
1308	dm3.chr2L	10,082,095 – 10,082,206		1787	10,082,095 – 10,082,206	-	6	116	65.10	-2.57	0.42	0.996127
1311	dm3.chr2L	10,095,849 – 10,095,940	- - - intron="intron;ID=intron_FBgn0083945:1_FBgn0083945:2;Name=CG34109-in;Parent=FBtr0300423;parent_type=mRNA" - - - -	1790	10,095,849 – 10,095,940	+	6	115	70.93	-2.34	0.45	0.947734
1312	dm3.chr2L	10,099,298 – 10,099,391	- - - intron="intron;ID=intron_FBgn0262032:4_FBgn0262032:3;Name=CG42843-in;Parent=FBtr0303928;parent_type=mRNA" - - - -	1792	10,099,298 – 10,099,391	-	5	116	69.57	-1.46	0.62	0.912497
1313	dm3.chr2L	10,109,327 – 10,109,476	- - - intron="intron;ID=intron_FBgn0083945:7_FBgn0083945:8;Name=CG34109-in;Parent=FBtr0300423;parent_type=mRNA" - - - -	1793	10,109,327 – 10,109,417	+	9	97	74.77	-1.92	0.68	0.989567
				1794	10,109,327 – 10,109,417	-	9	97	74.77	-2.91	0.56	0.998390
				1795	10,109,380 – 10,109,476	+	8	106	75.12	-2.66	0.42	0.953854
				1796	10,109,380 – 10,109,476	-	8	106	75.12	-2.62	0.44	0.962288
1318	dm3.chr2L	10,122,493 – 10,122,592	- - CDS="CDS;ID=CDS_FBgn0032184:1_807;Name=CG13135-cds;Parent=FBtr0079966;parent_type=mRNA" intron="intron;ID=intron_FBgn0083945:12_FBgn0083945:13;Name=CG34109-in;Parent=FBtr0300423;parent_type=mRNA" - - - -	1802	10,122,493 – 10,122,592	+	8	120	62.64	-2.45	0.25	0.905965
1321	dm3.chr2L	10,143,048 – 10,143,122	- - - - - - - -	1806	10,143,048 – 10,143,122	-	5	77	61.93	-1.02	0.54	0.930979
1322	dm3.chr2L	10,172,865 – 10,172,916	- - CDS="CDS;ID=CDS_FBgn0032188:1_802;Name=CG13137-cds;Parent=FBtr0301684;parent_type=mRNA" - - - - -	1807	10,172,865 – 10,172,916	-	5	51	80.20	-1.54	0.84	0.930099
1324	dm3.chr2L	10,182,380 – 10,182,451	- - - - - - - -	1809	10,182,380 – 10,182,451	+	5	74	86.65	-3.14	0.82	0.996055
1325	dm3.chr2L	10,209,709 – 10,209,774	- - - - - - - -	1810	10,209,709 – 10,209,774	+	5	67	96.96	-1.63	1.00	0.940883
1327	dm3.chr2L	10,230,809 – 10,230,950	- - - intron="intron;ID=intron_CG5694:6_CG5694:2;Name=CG5694-in;Parent=FBtr0079954;parent_type=mRNA" - - - -	1812	10,230,809 – 10,230,950	-	6	154	73.76	-2.45	0.46	0.967976
1328	dm3.chr2L	10,252,671 – 10,252,730	- - CDS="CDS;ID=CDS_FBgn0010407:3_705;Name=Ror-cds;Parent=FBtr0079978;parent_type=mRNA" - - - - -	1813	10,252,671 – 10,252,730	+	10	65	70.02	-0.78	0.78	0.942288
1331	dm3.chr2L	10,329,697 – 10,329,811	- - CDS="CDS;ID=CDS_FBgn0032221:7_777;Name=CG5375-cds;Parent=FBtr0113033;parent_type=mRNA" - - - - -	1816	10,329,697 – 10,329,811	+	9	119	69.06	-1.33	0.50	0.938595
1332	dm3.chr2L	10,344,039 – 10,344,131	- - - - "Rfam_10.0=RF00031;SECIS;AE014134.5/10344063-10344125\|9.6e-29" - - -	1817	10,344,039 – 10,344,131	+	10	115	66.14	-1.37	0.67	0.994448
1336	dm3.chr2L	10,390,618 – 10,390,709	- - CDS="CDS;ID=CDS_CG5102:2_705;Name=da-cds;Parent=FBtr0080008;parent_type=mRNA" - - - - -	1821	10,390,618 – 10,390,709	+	13	114	66.40	-2.30	0.38	0.985010
1340	dm3.chr2L	10,425,986 – 10,426,162	- - CDS="CDS;ID=CDS_FBgn0010083:1_848;Name=SmB-cds;Parent=FBtr0304118;parent_type=mRNA" - - - - -	1826	10,426,026 – 10,426,142	-	15	118	77.60	-1.81	0.55	0.960905
				1827	10,426,066 – 10,426,162	+	13	117	67.93	-1.62	0.55	0.989867
				1828	10,426,066 – 10,426,162	-	13	117	67.93	-2.65	0.70	0.999726
1342	dm3.chr2L	10,441,867 – 10,441,920	- - - - - - - -	1831	10,441,867 – 10,441,920	+	6	53	91.07	-1.78	0.91	0.921945
1345	dm3.chr2L	10,443,917 – 10,444,056	- - - intron="intron;ID=intron_FBgn0032252:2_FBgn0032252:3;Name=CG6232-in;Parent=FBtr0080029;parent_type=mRNA" - - - -	1834	10,443,917 – 10,444,019	+	5	109	88.89	-1.99	0.89	0.942905
1352	dm3.chr2L	10,480,623 – 10,480,843	- - - intron="intron;ID=intron_FBgn0032256:3_FBgn0032256:4;Name=RluA-2-in;Parent=FBtr0304132;parent_type=mRNA" - - - -	1842	10,480,623 – 10,480,735	+	6	117	81.62	-2.57	0.70	0.988582
1352	dm3.chr2L	10,480,623 – 10,480,843		1843	10,480,659 – 10,480,773	+	7	116	67.27	-1.68	0.48	0.986622
1356	dm3.chr2L	10,541,433 – 10,541,524	- - - - - - - -	1850	10,541,433 – 10,541,524	+	6	91	81.05	-2.01	0.69	0.941690
1362	dm3.chr2L	10,558,299 – 10,558,396	- - - intron="intron;ID=intron_FBgn0051721:1_FBgn0051721:2;Name=Trim9-in;Parent=FBtr0080096,FBtr0304114;parent_type=mRNA" - - - -	1857	10,558,299 – 10,558,396	+	5	97	90.93	-2.72	0.85	0.983825
1362	dm3.chr2L	10,558,299 – 10,558,396		1858	10,558,299 – 10,558,396	-	5	97	90.93	-2.21	0.89	0.963245
1369	dm3.chr2L	10,635,901 – 10,635,954	- - - - - - - -	1865	10,635,901 – 10,635,954	-	11	64	85.28	-2.75	0.63	0.961384
1370	dm3.chr2L	10,637,988 – 10,638,049	- - - - - - - -	1866	10,637,988 – 10,638,049	+	6	62	68.04	-1.38	0.53	0.964506
1370	dm3.chr2L	10,637,988 – 10,638,049	- - - - - - - -	1867	10,637,988 – 10,638,049	-	6	62	68.04	-1.25	0.54	0.950919
1372	dm3.chr2L	10,670,888 – 10,670,999	- - CDS="CDS;ID=CDS_CG31871:5_711;Name=CG31871-cds;Parent=FBtr0080104;parent_type=mRNA" - - - - -	1870	10,670,888 – 10,670,999	-	12	123	74.62	-2.02	0.48	0.956349
1376	dm3.chr2L	10,709,017 – 10,709,103	- - - - - - - -	1876	10,709,017 – 10,709,103	-	7	105	76.50	-2.35	0.55	0.967417
1381	dm3.chr2L	10,748,194 – 10,748,286	- - - intron="intron;ID=intron_CG17124:1_CG17124:2;Name=CG17124-in;Parent=FBtr0080117,FBtr0080118;parent_type=mRNA" - - - -	1881	10,748,194 – 10,748,286	+	5	100	68.46	-2.82	0.61	0.999280
1381	dm3.chr2L	10,748,194 – 10,748,286		1882	10,748,194 – 10,748,286	-	5	100	68.46	-1.66	0.60	0.976497
1382	dm3.chr2L	10,751,239 – 10,751,290	- - - intron="intron;ID=intron_CG17124:1_CG17124:2;Name=CG17124-in;Parent=FBtr0080117,FBtr0080118;parent_type=mRNA" - - - -	1883	10,751,239 – 10,751,290	+	3	51	93.46	-1.83	1.00	0.971922
1382	dm3.chr2L	10,751,239 – 10,751,290		1884	10,751,239 – 10,751,290	-	3	51	93.46	-1.74	1.00	0.964615
1387	dm3.chr2L	10,769,666 – 10,769,726	- - CDS="CDS;ID=CDS_FBgn0032298:4_788;Name=CG6724-cds;Parent=FBtr0080191;parent_type=mRNA" - - - - -	1890	10,769,666 – 10,769,726	-	8	60	76.85	-1.01	0.77	0.901212
1390	dm3.chr2L	10,799,562 – 10,799,655	- - - - - - - -	1893	10,799,562 – 10,799,655	-	4	93	76.98	-1.34	0.90	0.931334
1391	dm3.chr2L	10,800,876 – 10,800,976	- - - - - - - -	1894	10,800,876 – 10,800,976	-	4	104	91.68	-1.60	1.00	0.959633
1392	dm3.chr2L	10,801,738 – 10,801,834	- - - - - - - -	1895	10,801,738 – 10,801,832	-	9	106	55.18	-1.37	0.36	0.963865
1392	dm3.chr2L	10,801,738 – 10,801,834	- - - - - - - -	1896	10,801,738 – 10,801,834	-	9	108	55.23	-1.43	0.35	0.963067
1394	dm3.chr2L	10,811,510 – 10,811,607	- - - intron="intron;ID=intron_CG6713:32_CG6713:15;Name=Nos-in;Parent=FBtr0100484,FBtr0100489;parent_type=mRNA" - - - -	1898	10,811,510 – 10,811,607	+	10	112	72.76	-2.25	0.45	0.980861
1399	dm3.chr2L	10,887,286 – 10,887,403	- - - - - - - -	1905	10,887,286 – 10,887,403	+	6	120	92.26	-2.16	0.87	0.936290
1401	dm3.chr2L	10,922,841 – 10,922,895	- - - intron="intron;ID=intron_FBgn0261871:6_FBgn0261871:5;Name=dpr2-in;Parent=FBtr0306117;parent_type=mRNA" - - - -	1908	10,922,841 – 10,922,895	+	3	55	97.58	-2.41	0.94	0.970341
1402	dm3.chr2L	10,926,718 – 10,926,810	- - - intron="intron;ID=intron_FBgn0261871:9_FBgn0261871:8;Name=dpr2-in;Parent=FBtr0306116,FBtr0306117;parent_type=mRNA" - - - -	1910	10,926,718 – 10,926,810	+	12	118	82.35	-2.17	0.68	0.935670
1405	dm3.chr2L	10,963,777 – 10,963,964	- - - intron="intron;ID=intron_FBgn0261871:10_FBgn0261871:9;Name=dpr2-in;Parent=FBtr0306116,FBtr0306117;parent_type=mRNA" - - - -	1913	10,963,777 – 10,963,893	+	6	117	63.50	-2.14	0.52	0.998297
				1914	10,963,777 – 10,963,893	-	6	117	63.50	-1.64	0.53	0.992443
				1915	10,963,817 – 10,963,929	+	6	120	69.91	-2.32	0.52	0.991835
				1916	10,963,817 – 10,963,929	-	6	120	69.91	-1.42	0.64	0.958235
				1917	10,963,853 – 10,963,964	+	6	117	74.88	-2.05	0.60	0.971754
1407	dm3.chr2L	10,981,517 – 10,981,668	- - CDS="CDS;ID=CDS_FBgn0041781:9_857;Name=SCAR-cds;Parent=FBtr0305255,FBtr0305256;parent_type=mRNA" - - - - -	1921	10,981,557 – 10,981,668	+	15	114	77.03	-2.08	0.43	0.927148
1408	dm3.chr2L	10,987,231 – 10,987,333	- - CDS="CDS;ID=CDS_CG6122:1_705;Name=piwi-cds;Parent=FBtr0080166;parent_type=mRNA" - - - - -	1922	10,987,231 – 10,987,333	+	9	116	61.70	-1.16	0.43	0.938316
1409	dm3.chr2L	11,027,554 – 11,027,645	- - - - - - - -	1923	11,027,554 – 11,027,645	-	4	91	93.74	-3.26	0.99	0.998028
1414	dm3.chr2L	11,065,295 – 11,065,386	- - - intron="intron;ID=intron_FBgn0032330:7_FBgn0032330:6;Name=Samuel-in;Parent=FBtr0080161;parent_type=mRNA" - - - -	1928	11,065,295 – 11,065,386	-	4	94	92.97	-2.43	0.91	0.976582
1416	dm3.chr2L	11,069,428 – 11,069,521	- - - - - - - -	1930	11,069,428 – 11,069,521	+	4	97	87.72	-1.93	0.88	0.935601
1418	dm3.chr2L	11,096,647 – 11,096,752	- - - intron="intron;ID=intron_FBgn0032340:4_FBgn0032340:3;Name=Ge-1-in;Parent=FBtr0080231,FBtr0080232;parent_type=mRNA" - - - -	1933	11,096,647 – 11,096,752	-	11	112	64.83	-0.93	0.55	0.980230
1419	dm3.chr2L	11,103,501 – 11,103,551	- - - intron="intron;ID=intron_FBgn0032341:3_FBgn0032341:2;Name=Reps-in;Parent=FBtr0080230;parent_type=mRNA" - - - -	1934	11,103,501 – 11,103,551	-	3	50	88.00	-3.30	0.77	0.991175
1420	dm3.chr2L	11,104,838 – 11,104,929	- - CDS="CDS;ID=CDS_FBgn0032341:4_877;Name=Reps-cds;Parent=FBtr0080230;parent_type=mRNA" - - - - -	1935	11,104,838 – 11,104,929	+	13	108	64.68	-2.44	0.43	0.998955
1422	dm3.chr2L	11,118,974 – 11,119,091	- - CDS="CDS;ID=CDS_CG6230:1_719;Name=CG6230-cds;Parent=FBtr0080228;parent_type=mRNA" - - - - -	1937	11,118,974 – 11,119,091	+	15	120	72.67	-1.35	0.50	0.931013
1425	dm3.chr2L	11,152,831 – 11,152,945	- - - intron="intron;ID=intron_CG6287:3_CG6287:4;Name=CG6287-in;Parent=FBtr0080222;parent_type=mRNA" - - - -	1940	11,152,831 – 11,152,945	+	10	126	65.15	-2.28	0.30	0.978163
1425	dm3.chr2L	11,152,831 – 11,152,945		1941	11,152,831 – 11,152,945	-	10	126	65.15	-2.06	0.37	0.990053
1426	dm3.chr2L	11,162,266 – 11,162,386	- - CDS="CDS;ID=CDS_FBgn0259822:5_870;Name=Ca-beta-cds;Parent=FBtr0306385;parent_type=mRNA" intron="intron;ID=intron_FBgn0259822:6_FBgn0259822:4;Name=Ca-beta-in;Parent=FBtr0300114,FBtr0300536;parent_type=mRNA" - - - -	1942	11,162,266 – 11,162,386	-	3	120	99.44	-1.88	0.98	0.937859
1428	dm3.chr2L	11,181,573 – 11,181,669	- - - - - - - -	1944	11,181,573 – 11,181,669	-	12	115	82.72	-2.32	0.75	0.988073
1430	dm3.chr2L	11,196,983 – 11,197,076	- - - - - - - -	1948	11,196,983 – 11,197,076	-	5	101	82.47	-1.97	0.76	0.901694
1431	dm3.chr2L	11,201,495 – 11,201,589	- - - - - - - -	1949	11,201,495 – 11,201,589	-	8	118	71.06	-1.39	0.59	0.927206
1432	dm3.chr2L	11,202,508 – 11,202,621	- - - - - - - -	1950	11,202,508 – 11,202,621	+	6	139	66.49	-2.14	0.60	0.997275
1432	dm3.chr2L	11,202,508 – 11,202,621	- - - - - - - -	1951	11,202,508 – 11,202,621	-	6	139	66.49	-1.57	0.56	0.973291
1433	dm3.chr2L	11,209,245 – 11,209,461	- - - - - - - -	1952	11,209,245 – 11,209,295	+	3	50	96.00	-2.10	1.01	0.985042
1433	dm3.chr2L	11,209,245 – 11,209,461	- - - - - - - -	1953	11,209,295 – 11,209,398	-	9	115	71.20	-2.13	0.53	0.990922
1435	dm3.chr2L	11,242,662 – 11,242,756	- - - intron="intron;ID=intron_FBgn0259750:9_FBgn0259750:11;Name=ab-in;Parent=FBtr0080203,FBtr0080204,FBtr0300473;parent_type=mRNA" - - - -	1959	11,242,662 – 11,242,756	-	5	96	89.31	-2.24	0.85	0.952019
1437	dm3.chr2L	11,252,820 – 11,252,919	- - - intron="intron;ID=intron_FBgn0259750:9_FBgn0259750:11;Name=ab-in;Parent=FBtr0080203,FBtr0080204,FBtr0300473;parent_type=mRNA" - - - -	1961	11,252,820 – 11,252,919	-	12	116	67.76	-1.60	0.45	0.961510
1446	dm3.chr2L	11,314,475 – 11,314,593	- - - - - - - -	1973	11,314,475 – 11,314,593	+	11	120	96.19	-3.00	0.88	0.987261
1446	dm3.chr2L	11,314,475 – 11,314,593	- - - - - - - -	1974	11,314,475 – 11,314,593	-	11	120	96.19	-2.85	0.78	0.929077
1447	dm3.chr2L	11,328,738 – 11,328,832	- - - - - - - -	1975	11,328,738 – 11,328,832	+	8	101	72.21	-2.03	0.47	0.955892
1448	dm3.chr2L	11,341,756 – 11,341,864	- - - - - - - -	1976	11,341,756 – 11,341,864	-	9	119	73.02	-1.57	0.71	0.981266
1449	dm3.chr2L	11,345,274 – 11,345,372	- - - - - - - -	1977	11,345,274 – 11,345,372	-	12	112	75.45	-2.51	0.40	0.944570
1451	dm3.chr2L	11,351,595 – 11,351,647	- - - - - - - -	1979	11,351,595 – 11,351,647	-	4	52	94.82	-2.40	0.91	0.966897
1453	dm3.chr2L	11,371,221 – 11,371,331	- - - intron="intron;ID=intron_CG4881:3_CG4881:4;Name=salr-in;Parent=FBtr0080235,FBtr0080236;parent_type=mRNA" - - - -	1981	11,371,221 – 11,371,331	-	10	126	76.63	-2.69	0.65	0.996583
1456	dm3.chr2L	11,376,566 – 11,376,660	- - - - - - - -	1985	11,376,566 – 11,376,660	-	7	103	83.96	-3.30	0.62	0.993003
1459	dm3.chr2L	11,386,219 – 11,386,358	- - - - - - - -	1990	11,386,250 – 11,386,345	+	6	96	72.05	-2.08	0.45	0.949505
1461	dm3.chr2L	11,396,107 – 11,396,200	- - - - - - - -	1993	11,396,107 – 11,396,200	-	6	106	76.92	-2.30	0.51	0.914070
1464	dm3.chr2L	11,400,069 – 11,400,169	- - - - - - - -	1997	11,400,069 – 11,400,169	+	11	101	92.73	-2.60	0.80	0.955905
1465	dm3.chr2L	11,400,742 – 11,400,915	- - - - - - - -	2000	11,400,777 – 11,400,880	-	5	104	61.48	-1.54	0.44	0.941190
1465	dm3.chr2L	11,400,742 – 11,400,915	- - - - - - - -	2001	11,400,817 – 11,400,915	-	4	102	65.15	-1.40	0.56	0.913152
1468	dm3.chr2L	11,406,352 – 11,406,418	- - - - - - - -	2004	11,406,352 – 11,406,418	+	7	66	70.64	-1.48	0.57	0.980767
1469	dm3.chr2L	11,408,047 – 11,408,123	- - - - - - - -	2005	11,408,047 – 11,408,123	+	7	78	73.17	-2.41	0.50	0.990222
1471	dm3.chr2L	11,420,536 – 11,420,631	- - - - - - - -	2008	11,420,536 – 11,420,631	-	6	97	75.83	-2.49	0.44	0.956192
1473	dm3.chr2L	11,426,048 – 11,426,170	- - - - - - - -	2010	11,426,048 – 11,426,170	+	6	141	74.18	-1.75	0.55	0.940479
1474	dm3.chr2L	11,426,453 – 11,426,505	- - - - - - - -	2011	11,426,453 – 11,426,505	+	5	52	92.88	-2.09	0.96	0.976523
1476	dm3.chr2L	11,430,589 – 11,430,729	- - - - - - - -	2013	11,430,589 – 11,430,729	+	7	151	75.01	-1.87	0.62	0.976799
1480	dm3.chr2L	11,453,314 – 11,453,368	- - - - - - - -	2017	11,453,314 – 11,453,368	-	6	54	97.53	-1.68	0.99	0.936931
1483	dm3.chr2L	11,476,094 – 11,476,192	- - - - - - - -	2020	11,476,094 – 11,476,192	+	9	102	76.38	-1.58	0.67	0.962897
1486	dm3.chr2L	11,485,427 – 11,485,608	- - - - - - - -	2025	11,485,467 – 11,485,569	-	3	102	95.42	-1.56	0.98	0.904922
1487	dm3.chr2L	11,487,561 – 11,487,695	- - - - - - - -	2027	11,487,561 – 11,487,667	+	5	111	95.09	-2.74	0.85	0.967141
				2028	11,487,561 – 11,487,667	-	5	111	95.09	-3.30	0.87	0.993012
				2029	11,487,596 – 11,487,695	+	7	109	73.22	-2.73	0.35	0.944174
				2030	11,487,596 – 11,487,695	-	7	109	73.22	-2.26	0.50	0.979713
1491	dm3.chr2L	11,508,911 – 11,509,011	- - - - - - - -	2035	11,508,911 – 11,509,011	-	5	100	95.60	-3.05	0.92	0.993051
1492	dm3.chr2L	11,511,002 – 11,511,144	- - - intron="intron;ID=intron_CG6509:4_CG6509:5;Name=CG6509-in;Parent=FBtr0080246,FBtr0080247;parent_type=mRNA" - - - -	2036	11,511,002 – 11,511,104	+	6	118	68.58	-1.78	0.58	0.986452
				2037	11,511,002 – 11,511,104	-	6	118	68.58	-1.67	0.67	0.991387
				2038	11,511,026 – 11,511,133	+	7	110	64.88	-1.56	0.38	0.916954
				2039	11,511,026 – 11,511,133	-	7	110	64.88	-1.52	0.47	0.982780
				2040	11,511,039 – 11,511,144	-	7	110	63.94	-1.57	0.42	0.966035
1495	dm3.chr2L	11,538,280 – 11,538,372	- - - - - - - -	2044	11,538,280 – 11,538,372	+	7	105	75.27	-1.80	0.63	0.956093
1504	dm3.chr2L	11,642,444 – 11,642,513	- - - - - - - -	2053	11,642,444 – 11,642,513	+	12	69	82.36	-2.19	0.70	0.976516
1506	dm3.chr2L	11,679,241 – 11,679,359	- - - - - - - -	2056	11,679,241 – 11,679,359	+	4	118	94.07	-2.93	0.82	0.972840
1506	dm3.chr2L	11,679,241 – 11,679,359	- - - - - - - -	2057	11,679,241 – 11,679,359	-	4	118	94.07	-2.92	0.90	0.990185
1508	dm3.chr2L	11,683,917 – 11,683,979	- - - - - - - -	2060	11,683,917 – 11,683,979	+	5	62	94.19	-2.53	0.81	0.914955
1509	dm3.chr2L	11,688,370 – 11,688,472	- - - - - - - -	2062	11,688,370 – 11,688,472	+	8	111	74.59	-1.53	0.71	0.952926
1511	dm3.chr2L	11,693,757 – 11,693,855	- - - - - - - -	2065	11,693,757 – 11,693,855	-	4	98	83.61	-3.15	0.76	0.994498
1512	dm3.chr2L	11,702,700 – 11,702,758	- - - - - - - -	2066	11,702,700 – 11,702,758	-	3	58	79.31	-2.81	0.76	0.992174
1513	dm3.chr2L	11,704,452 – 11,704,549	- - - - - - - -	2067	11,704,452 – 11,704,549	+	9	109	84.32	-2.32	0.72	0.961878
1513	dm3.chr2L	11,704,452 – 11,704,549	- - - - - - - -	2068	11,704,452 – 11,704,549	-	9	109	84.32	-1.43	0.92	0.931825
1514	dm3.chr2L	11,712,284 – 11,712,420	- - - - - - - -	2070	11,712,306 – 11,712,420	+	7	114	80.18	-2.48	0.58	0.977887
1516	dm3.chr2L	11,734,123 – 11,734,231	- - - - - - - -	2073	11,734,141 – 11,734,231	+	12	113	59.19	-1.21	0.45	0.983202
1521	dm3.chr2L	11,750,449 – 11,750,547	- - - - - - - -	2078	11,750,449 – 11,750,547	+	6	105	78.66	-1.59	0.75	0.926918
1522	dm3.chr2L	11,756,218 – 11,756,315	- - - - - - - -	2079	11,756,218 – 11,756,315	-	11	106	71.90	-0.84	0.70	0.922787
1523	dm3.chr2L	11,763,358 – 11,763,478	- - - - - - - -	2080	11,763,358 – 11,763,478	+	12	120	97.08	-2.62	0.93	0.984010
1524	dm3.chr2L	11,771,426 – 11,771,556	- - - - - - - -	2082	11,771,426 – 11,771,522	-	8	117	71.36	-2.26	0.45	0.953350
1525	dm3.chr2L	11,772,994 – 11,773,088	- - - - - - - -	2084	11,772,994 – 11,773,088	+	8	99	91.65	-3.44	0.89	0.997353
1536	dm3.chr2L	11,903,547 – 11,903,648	- - - - - - - -	2097	11,903,547 – 11,903,648	-	7	103	81.83	-2.50	0.64	0.981136
1538	dm3.chr2L	11,916,763 – 11,916,892	- - - intron="intron;ID=intron_FBgn0259225:16_FBgn0259225:15;Name=Pde1c-in;Parent=FBtr0299781,FBtr0299786;parent_type=mRNA" - - - -	2099	11,916,763 – 11,916,876	+	9	119	83.32	-1.75	0.78	0.933167
1538	dm3.chr2L	11,916,763 – 11,916,892		2101	11,916,796 – 11,916,892	-	9	112	69.15	-2.46	0.40	0.989146
1539	dm3.chr2L	11,921,390 – 11,921,494	- - - intron="intron;ID=intron_FBgn0259225:16_FBgn0259225:15;Name=Pde1c-in;Parent=FBtr0299781,FBtr0299786;parent_type=mRNA" - - - -	2102	11,921,390 – 11,921,494	+	4	104	82.53	-2.75	0.63	0.967470
1540	dm3.chr2L	11,940,997 – 11,941,127	- - - - - - - -	2105	11,941,031 – 11,941,127	+	9	107	59.80	-1.33	0.38	0.956153
1543	dm3.chr2L	11,954,111 – 11,954,213	- - - - - - - -	2109	11,954,111 – 11,954,213	-	8	106	76.19	-1.32	0.74	0.949915
1545	dm3.chr2L	11,964,177 – 11,964,283	FBnoncoding="ncRNA;ID=FBtr0303297;Name=bft-RC;Parent=FBgn0041606;Dbxref=FlyBase_Annotation_IDs:CR31863-RC;score_text=Weakly" - - - - - - -	2112	11,964,177 – 11,964,278	-	5	103	88.61	-2.76	0.78	0.978628
1545	dm3.chr2L	11,964,177 – 11,964,283		2113	11,964,181 – 11,964,283	-	5	104	86.19	-2.72	0.82	0.990162
1546	dm3.chr2L	11,966,772 – 11,966,858	FBnoncoding="ncRNA;ID=FBtr0303297;Name=bft-RC;Parent=FBgn0041606;Dbxref=FlyBase_Annotation_IDs:CR31863-RC;score_text=Weakly" - - - - - - -	2115	11,966,772 – 11,966,858	-	12	102	75.77	-2.12	0.56	0.972208
1547	dm3.chr2L	11,972,444 – 11,972,581	- - - - - - - -	2117	11,972,444 – 11,972,551	-	5	112	86.33	-2.67	0.80	0.985373
1547	dm3.chr2L	11,972,444 – 11,972,581	- - - - - - - -	2118	11,972,484 – 11,972,581	-	4	97	85.40	-1.97	0.86	0.945375
1548	dm3.chr2L	11,987,557 – 11,987,668	- - - intron="intron;ID=intron_FBgn0032388:8_FBgn0032388:7;Name=CG6686-in;Parent=FBtr0089572;parent_type=mRNA" - - - -	2119	11,987,557 – 11,987,661	-	11	117	67.00	-2.20	0.39	0.990919
1549	dm3.chr2L	12,004,098 – 12,004,188	- - - - - - - -	2121	12,004,098 – 12,004,188	+	6	94	72.03	-2.06	0.63	0.987965
1557	dm3.chr2L	12,026,256 – 12,026,362	- - - - - - - -	2131	12,026,256 – 12,026,362	+	6	111	72.41	-2.02	0.55	0.977204
1560	dm3.chr2L	12,082,594 – 12,082,706	- - - - - - - -	2134	12,082,594 – 12,082,706	+	5	112	81.06	-2.22	0.74	0.959379
1562	dm3.chr2L	12,084,121 – 12,084,226	- - CDS="CDS;ID=CDS_CG6716:2_717;Name=prd-cds;Parent=FBtr0080299;parent_type=mRNA" - - - - -	2137	12,084,121 – 12,084,211	+	9	105	61.24	-1.92	0.31	0.937290
1571	dm3.chr2L	12,183,465 – 12,183,560	- - - - - - - -	2148	12,183,465 – 12,183,560	+	12	119	91.63	-3.00	0.68	0.944633
1572	dm3.chr2L	12,185,058 – 12,185,148	- - - - - - - -	2149	12,185,058 – 12,185,148	+	11	116	75.86	-2.31	0.51	0.961460
1574	dm3.chr2L	12,191,464 – 12,191,598	- - - - - - - -	2151	12,191,464 – 12,191,566	+	8	108	56.02	-1.17	0.41	0.975244
1574	dm3.chr2L	12,191,464 – 12,191,598	- - - - - - - -	2152	12,191,498 – 12,191,598	+	10	116	58.48	-1.23	0.45	0.983893
1577	dm3.chr2L	12,225,728 – 12,225,791	- - - - - - - -	2155	12,225,728 – 12,225,791	+	7	67	68.89	-0.99	0.77	0.979033
1577	dm3.chr2L	12,225,728 – 12,225,791	- - - - - - - -	2156	12,225,728 – 12,225,791	-	7	67	68.89	-1.43	0.49	0.936471
1580	dm3.chr2L	12,263,069 – 12,263,172	- - - intron="intron;ID=intron_FBgn0000114:2_FBgn0000114:5;Name=aret-in;Parent=FBtr0080344;parent_type=mRNA" - - - -	2160	12,263,069 – 12,263,172	+	8	115	68.36	-1.17	0.60	0.969505
1580	dm3.chr2L	12,263,069 – 12,263,172		2161	12,263,069 – 12,263,172	-	8	115	68.36	-2.93	0.57	0.999769
1585	dm3.chr2L	12,295,834 – 12,295,939	- - - intron="intron;ID=intron_FBgn0000114:9_FBgn0000114:10;Name=aret-in;Parent=FBtr0080347;parent_type=mRNA" - - - -	2166	12,295,834 – 12,295,933	+	11	118	80.07	-2.26	0.77	0.991770
				2167	12,295,834 – 12,295,933	-	11	118	80.07	-1.63	0.72	0.924093
				2168	12,295,838 – 12,295,939	+	11	124	83.10	-2.99	0.64	0.992067
1591	dm3.chr2L	12,314,686 – 12,314,815	- - - - - - - -	2176	12,314,686 – 12,314,803	-	12	120	92.84	-2.23	0.88	0.958632
1591	dm3.chr2L	12,314,686 – 12,314,815	- - - - - - - -	2177	12,314,724 – 12,314,815	-	12	113	83.76	-2.55	0.56	0.926007
1593	dm3.chr2L	12,332,175 – 12,332,265	- - - - - - - -	2180	12,332,175 – 12,332,265	-	6	91	73.11	-2.00	0.66	0.992693
1594	dm3.chr2L	12,332,824 – 12,332,940	- - - - - - - -	2181	12,332,824 – 12,332,940	+	8	121	71.79	-1.44	0.59	0.959047
1596	dm3.chr2L	12,353,880 – 12,353,985	- - - intron="intron;ID=intron_FBgn0262475:3_FBgn0262475:4;Name=bru-2-in;Parent=FBtr0304856,FBtr0304857,FBtr0304858,FBtr0304859,FBtr0304860,FBtr0304862;parent_type=mRNA" - - - -	2183	12,353,880 – 12,353,985	+	10	112	73.72	-1.29	0.65	0.952237
1599	dm3.chr2L	12,361,609 – 12,361,717	- - - intron="intron;ID=intron_FBgn0262475:5_FBgn0262475:6;Name=bru-2-in;Parent=FBtr0304856,FBtr0304857,FBtr0304858,FBtr0304859,FBtr0304862;parent_type=mRNA" - - - -	2187	12,361,609 – 12,361,717	-	11	109	71.48	-1.59	0.53	0.978589
1600	dm3.chr2L	12,372,985 – 12,373,092	- - - intron="intron;ID=intron_FBgn0262475:8_FBgn0262475:9;Name=bru-2-in;Parent=FBtr0304864;parent_type=mRNA" - - - -	2188	12,372,985 – 12,373,092	+	6	107	78.69	-1.89	0.66	0.928909
1601	dm3.chr2L	12,373,986 – 12,374,123	- - CDS="CDS;ID=CDS_FBgn0262475:9_849;Name=bru-2-cds;Parent=FBtr0304861;parent_type=mRNA" - - - - -	2190	12,373,986 – 12,374,085	-	11	120	76.11	-1.47	0.71	0.921710
1602	dm3.chr2L	12,378,265 – 12,378,366	- - - intron="intron;ID=intron_FBgn0262475:9_FBgn0262475:10;Name=bru-2-in;Parent=FBtr0304861,FBtr0304864;parent_type=mRNA" - - - -	2193	12,378,265 – 12,378,366	-	6	103	76.39	-1.66	0.78	0.976675
1607	dm3.chr2L	12,416,152 – 12,416,245	- - - intron="intron;ID=intron_FBgn0043841:9_FBgn0043841:7;Name=vir-1-in;Parent=FBtr0080391;parent_type=mRNA" - - - -	2198	12,416,152 – 12,416,245	+	10	103	83.36	-2.14	0.88	0.988648
1609	dm3.chr2L	12,459,021 – 12,459,174	- - - intron="intron;ID=intron_FBgn0259176:3_FBgn0259176:2;Name=bun-in;Parent=FBtr0299657;parent_type=mRNA" - - - -	2202	12,459,042 – 12,459,135	+	7	116	76.66	-3.80	0.67	0.999542
1609	dm3.chr2L	12,459,021 – 12,459,174		2203	12,459,042 – 12,459,135	-	7	116	76.66	-2.97	0.62	0.996594
1610	dm3.chr2L	12,469,404 – 12,469,530	- - - - - - - -	2206	12,469,440 – 12,469,530	+	5	93	85.52	-2.68	0.65	0.934781
1616	dm3.chr2L	12,502,909 – 12,502,967	- - - intron="intron;ID=intron_FBgn0259176:10_FBgn0259176:9;Name=bun-in;Parent=FBtr0300522;parent_type=mRNA" - - - -	2213	12,502,909 – 12,502,967	-	7	61	74.05	-1.66	0.53	0.913832
1617	dm3.chr2L	12,510,769 – 12,510,876	- - - - - - - -	2214	12,510,769 – 12,510,876	+	7	114	76.79	-2.16	0.59	0.958630
1618	dm3.chr2L	12,543,950 – 12,544,052	FBnoncoding="ncRNA;ID=FBtr0303215;Name=CR42746-RA;Parent=FBgn0261709;Dbxref=FlyBase_Annotation_IDs:CR42746-RA;score_text=Moderately" - - intron="intron;ID=intron_FBgn0259176:17_FBgn0259176:16;Name=bun-in;Parent=FBtr0299658,FBtr0300523;parent_type=mRNA" - - - -	2215	12,543,950 – 12,544,052	+	7	104	73.17	-2.11	0.46	0.964908
1618	dm3.chr2L	12,543,950 – 12,544,052		2216	12,543,950 – 12,544,052	-	7	104	73.17	-1.96	0.43	0.904410
1624	dm3.chr2L	12,607,597 – 12,607,728	- - - intron="intron;ID=intron_FBgn0085424:2_FBgn0085424:3;Name=nub-in;Parent=FBtr0112642;parent_type=mRNA" - - - -	2223	12,607,630 – 12,607,728	+	10	103	61.55	-1.29	0.44	0.979070
1629	dm3.chr2L	12,674,372 – 12,674,465	- - - intron="intron;ID=intron_CG12287:6_CG12287:2;Name=pdm2-in;Parent=FBtr0080392;parent_type=mRNA" - - - -	2229	12,674,372 – 12,674,465	+	9	106	66.09	-1.40	0.54	0.983260
1630	dm3.chr2L	12,675,340 – 12,675,431	- - - intron="intron;ID=intron_CG12287:6_CG12287:2;Name=pdm2-in;Parent=FBtr0080392;parent_type=mRNA" - - - -	2230	12,675,340 – 12,675,431	-	8	99	71.11	-2.80	0.35	0.963955
1633	dm3.chr2L	12,711,577 – 12,711,638	- - CDS="CDS;ID=CDS_FBgn0032454:3_789;Name=CG5787-cds;Parent=FBtr0080405;parent_type=mRNA" - - - - -	2234	12,711,577 – 12,711,638	+	6	61	75.63	-1.52	0.73	0.961992
1634	dm3.chr2L	12,715,903 – 12,716,018	- - CDS="CDS;ID=CDS_FBgn0032455:6_789;Name=CG5792-cds;Parent=FBtr0301163;parent_type=mRNA" - - - - -	2237	12,715,923 – 12,716,018	-	5	99	67.18	-1.49	0.49	0.924315
1635	dm3.chr2L	12,752,670 – 12,752,739	- - - - - - - -	2238	12,752,670 – 12,752,739	+	8	69	81.62	-2.97	0.54	0.987199
1638	dm3.chr2L	12,790,594 – 12,790,700	- - - - - - - -	2243	12,790,594 – 12,790,700	-	9	114	84.68	-2.33	0.65	0.937648
1639	dm3.chr2L	12,805,006 – 12,805,061	- - - - - - - -	2244	12,805,006 – 12,805,061	+	5	55	87.09	-2.15	0.86	0.965660
1641	dm3.chr2L	12,810,536 – 12,810,677	- - - - - - - -	2246	12,810,536 – 12,810,677	+	5	150	79.53	-1.97	0.68	0.924317
1642	dm3.chr2L	12,822,847 – 12,822,906	- - - - - - - -	2248	12,822,847 – 12,822,906	-	6	66	63.37	-2.04	0.40	0.980724
1644	dm3.chr2L	12,835,967 – 12,836,096	- - - - - - - -	2251	12,835,967 – 12,836,070	-	7	105	67.23	-1.73	0.38	0.920719
1644	dm3.chr2L	12,835,967 – 12,836,096	- - - - - - - -	2253	12,836,005 – 12,836,096	-	7	104	69.08	-1.74	0.45	0.917649
1650	dm3.chr2L	12,853,153 – 12,853,235	- - - - - - - -	2260	12,853,153 – 12,853,235	-	6	92	83.11	-2.36	0.75	0.977296
1651	dm3.chr2L	12,856,565 – 12,856,671	- - - - - - - -	2261	12,856,565 – 12,856,671	+	12	120	91.28	-4.37	0.82	0.998978
1651	dm3.chr2L	12,856,565 – 12,856,671	- - - - - - - -	2262	12,856,565 – 12,856,671	-	12	120	91.28	-3.07	0.71	0.974496
1657	dm3.chr2L	12,884,190 – 12,884,286	- - - - - - - -	2269	12,884,190 – 12,884,286	+	7	100	75.69	-1.64	0.58	0.916135
1658	dm3.chr2L	12,886,446 – 12,886,546	- - - - - - - -	2270	12,886,446 – 12,886,542	+	11	119	86.18	-2.56	0.71	0.968552
1658	dm3.chr2L	12,886,446 – 12,886,546	- - - - - - - -	2271	12,886,446 – 12,886,546	+	11	119	86.83	-2.43	0.71	0.946124
1663	dm3.chr2L	12,901,063 – 12,901,157	- - - - - - - -	2276	12,901,063 – 12,901,154	-	6	91	95.97	-2.44	0.87	0.938840
1663	dm3.chr2L	12,901,063 – 12,901,157	- - - - - - - -	2277	12,901,063 – 12,901,157	-	6	94	93.76	-2.29	0.85	0.923036
1664	dm3.chr2L	12,903,749 – 12,903,910	- - - - - - - -	2278	12,903,749 – 12,903,849	+	11	116	66.52	-1.02	0.69	0.983284
				2279	12,903,749 – 12,903,849	-	11	116	66.52	-1.06	0.64	0.978993
				2280	12,903,769 – 12,903,885	+	11	119	73.14	-1.67	0.58	0.985378
				2281	12,903,809 – 12,903,910	+	10	104	80.86	-3.02	0.66	0.997996
1666	dm3.chr2L	12,907,641 – 12,907,732	- - - - - - - -	2283	12,907,641 – 12,907,732	+	12	107	73.96	-0.79	0.89	0.936882
1670	dm3.chr2L	12,932,487 – 12,932,588	- - - - - - - -	2287	12,932,487 – 12,932,588	-	6	104	69.30	-1.70	0.47	0.939907
1686	dm3.chr2L	13,027,288 – 13,027,382	- - CDS="CDS;ID=CDS_FBgn0262160:2_759;Name=CG9932-cds;Parent=FBtr0089956;parent_type=mRNA" - - - - -	2304	13,027,288 – 13,027,382	+	7	94	84.34	-2.22	0.85	0.978127
1689	dm3.chr2L	13,048,605 – 13,048,698	- - - intron="intron;ID=intron_FBgn0262160:7_FBgn0262160:6;Name=CG9932-in;Parent=FBtr0305554,FBtr0089956;parent_type=mRNA" - - - -	2308	13,048,605 – 13,048,698	+	4	98	71.03	-1.41	0.70	0.922897
1693	dm3.chr2L	13,064,995 – 13,065,123	- - - - - - - -	2312	13,064,995 – 13,065,092	+	8	104	69.32	-0.91	0.64	0.956056
1696	dm3.chr2L	13,077,878 – 13,077,947	- - - - - - - -	2318	13,077,878 – 13,077,947	-	4	69	91.79	-2.78	0.73	0.915929
1698	dm3.chr2L	13,100,575 – 13,100,671	- - - - - - - -	2320	13,100,575 – 13,100,671	+	9	96	94.97	-1.76	0.95	0.928664
1699	dm3.chr2L	13,109,198 – 13,109,315	- - CDS="CDS;ID=CDS_FBgn0032470:5_870;Name=CG5142-cds;Parent=FBtr0301366;parent_type=mRNA" - - - - -	2321	13,109,198 – 13,109,315	+	14	119	72.76	-1.69	0.47	0.971358
1700	dm3.chr2L	13,109,655 – 13,109,746	- - - - - - - -	2322	13,109,655 – 13,109,746	+	9	103	73.87	-2.92	0.49	0.996779
1704	dm3.chr2L	13,131,553 – 13,131,646	- - CDS="CDS;ID=CDS_FBgn0032471:2_850;Name=CG5122-cds;Parent=FBtr0080431;parent_type=mRNA" - - - - -	2327	13,131,553 – 13,131,646	+	6	102	63.32	-2.16	0.33	0.971154
1706	dm3.chr2L	13,143,613 – 13,143,722	- - CDS="CDS;ID=CDS_CG16978:2_734;Name=CG16978-cds;Parent=FBtr0080495;parent_type=mRNA" - - - - -	2329	13,143,613 – 13,143,722	-	5	109	93.03	-2.02	0.90	0.927766
1707	dm3.chr2L	13,145,392 – 13,145,523	- - - - - - - -	2331	13,145,421 – 13,145,523	+	9	112	60.08	-0.64	0.53	0.942204
1710	dm3.chr2L	13,151,581 – 13,151,707	- - - - - - - -	2334	13,151,581 – 13,151,707	+	7	128	68.77	-1.12	0.56	0.941091
1714	dm3.chr2L	13,190,013 – 13,190,149	- - - intron="intron;ID=intron_FBgn0032479:6_FBgn0032479:5;Name=CG16974-in;Parent=FBtr0305555;parent_type=mRNA" - - - -	2338	13,190,013 – 13,190,110	-	5	100	86.80	-2.67	0.75	0.971827
1715	dm3.chr2L	13,191,494 – 13,191,635	- - - intron="intron;ID=intron_FBgn0032479:6_FBgn0032479:5;Name=CG16974-in;Parent=FBtr0305555;parent_type=mRNA" - - - -	2341	13,191,494 – 13,191,595	+	7	104	69.02	-2.95	0.30	0.970249
1715	dm3.chr2L	13,191,494 – 13,191,635		2342	13,191,525 – 13,191,635	+	7	111	66.09	-2.89	0.48	0.999519
1721	dm3.chr2L	13,212,002 – 13,212,113	FBnoncoding="snRNA;ID=FBtr0080486;Name=snRNA:U2:34ABa-RA;Parent=FBgn0004191;Dbxref=FlyBase_Annotation_IDs:CR31850-RA,REFSEQ:NR_001645;score_text=Weakly" - - - "Rfam_10.0=RF00004;U2;AANI01017247.1/37186-37381\|2.5e-51" "Noncode_2.0=n5383_u364_X04246_snRNA_Drosophila\|2.7e-57" "unique_Noncode_2.0=u4720_snRNA_Drosophila\|2.4e-57" -	2349	13,212,002 – 13,212,113	+	13	117	91.41	-5.25	0.75	0.999460
1721	dm3.chr2L	13,212,002 – 13,212,113		2350	13,212,002 – 13,212,113	-	13	117	91.41	-2.72	0.77	0.973737
1722	dm3.chr2L	13,215,801 – 13,216,042	FBnoncoding="snRNA;ID=FBtr0080443;Name=snRNA:U2:34ABb-RA;Parent=FBgn0004192;Dbxref=FlyBase_Annotation_IDs:CR31854-RA,REFSEQ:NR_001646;score_text=Weakly" - - - "Rfam_10.0=RF00004;U2;AANI01017247.1/37186-37381\|6.5e-94" "Noncode_2.0=n377_u357_AE003639_snRNA_Drosophila\|3e-105" "unique_Noncode_2.0=u357_snRNA_Drosophila\|3e-105" -	2352	13,215,801 – 13,215,909	-	14	111	78.28	-1.30	0.61	0.915965
				2353	13,215,832 – 13,215,941	+	14	112	90.31	-2.96	0.87	0.995857
				2354	13,215,832 – 13,215,941	-	14	112	90.31	-5.18	0.93	0.999005
				2355	13,215,869 – 13,215,979	+	14	112	88.57	-2.35	0.86	0.987065
				2356	13,215,869 – 13,215,979	-	14	112	88.57	-5.00	0.81	0.999512
1723	dm3.chr2L	13,244,465 – 13,244,534	FBnoncoding="snRNA;ID=FBtr0091789;Name=snRNA:U2:34ABc-RA;Parent=FBgn0041720;Dbxref=FlyBase_Annotation_IDs:CR33788-RA,REFSEQ:NR_002513;score_text=Weakly" - - - "Rfam_10.0=RF00004;U2;AASU01039518.1/2204-2353\|2.6e-28" "Noncode_2.0=n5384_u4723_X04247_snRNA_Drosophila\|1.7e-32" "unique_Noncode_2.0=u4723_snRNA_Drosophila\|1.6e-32" -	2359	13,244,465 – 13,244,534	+	14	75	86.99	-2.41	0.74	0.974281
1724	dm3.chr2L	13,244,895 – 13,244,987	FBnoncoding="snRNA;ID=FBtr0080451;Name=snRNA:U5:34A-RA;Parent=FBgn0003935;Dbxref=FlyBase_Annotation_IDs:CR31853-RA,REFSEQ:NR_001647;score_text=Weakly" - - - "Rfam_10.0=RF00020;U5;AABU01002759.1/8079032-8079152\|4.1e-34" "Noncode_2.0=n375_u355_AE003639_snRNA_Drosophila\|2.7e-38" "unique_Noncode_2.0=u355_snRNA_Drosophila\|2.4e-38" -	2360	13,244,895 – 13,244,987	+	13	100	73.19	-2.16	0.80	0.998800
1728	dm3.chr2L	13,322,184 – 13,322,290	- - - - - - - -	2364	13,322,184 – 13,322,283	+	11	117	73.85	-2.00	0.47	0.929604
1728	dm3.chr2L	13,322,184 – 13,322,290	- - - - - - - -	2366	13,322,191 – 13,322,290	+	11	117	75.29	-2.47	0.49	0.983283
1730	dm3.chr2L	13,335,386 – 13,335,508	- - - - - - - -	2369	13,335,386 – 13,335,477	-	10	113	78.98	-1.89	0.72	0.964593
				2370	13,335,405 – 13,335,508	+	11	119	84.53	-2.57	0.74	0.986044
				2371	13,335,405 – 13,335,508	-	11	119	84.53	-2.11	0.70	0.918400
1731	dm3.chr2L	13,354,394 – 13,354,486	- - - - - - - -	2373	13,354,394 – 13,354,486	-	12	111	70.10	-1.78	0.79	0.996867
1736	dm3.chr2L	13,415,143 – 13,415,277	- - - - - - - -	2380	13,415,178 – 13,415,277	-	6	114	71.44	-1.31	0.64	0.916014
1737	dm3.chr2L	13,417,343 – 13,417,441	- - - - - - - -	2382	13,417,343 – 13,417,441	-	4	99	94.94	-1.93	0.93	0.922133
1738	dm3.chr2L	13,432,694 – 13,432,804	- - - - - - - -	2383	13,432,694 – 13,432,795	+	5	101	79.01	-3.44	0.64	0.998833
1741	dm3.chr2L	13,461,389 – 13,461,496	- - - - - - - -	2389	13,461,389 – 13,461,496	-	5	107	92.70	-2.35	0.90	0.970727
1746	dm3.chr2L	13,484,543 – 13,484,679	FBnoncoding="ncRNA;ID=FBtr0303312;Name=CR31846-RB;Parent=FBgn0051846;Dbxref=FlyBase_Annotation_IDs:CR31846-RB;score_text=Strongly" - - intron="intron;ID=intron_FBgn0261855:1_FBgn0261855:5;Name=CG42784-in;Parent=FBtr0303438;parent_type=mRNA" - - - -	2397	13,484,543 – 13,484,648	+	7	114	85.67	-2.69	0.75	0.984995
				2398	13,484,543 – 13,484,648	-	7	114	85.67	-2.24	0.82	0.972789
				2399	13,484,582 – 13,484,679	+	5	97	98.56	-4.00	1.00	0.998624
1749	dm3.chr2L	13,488,436 – 13,488,565	- - - intron="intron;ID=intron_FBgn0261855:2_FBgn0261855:4;Name=CG42784-in;Parent=FBtr0303439;parent_type=mRNA" - - - -	2405	13,488,436 – 13,488,535	-	10	112	75.37	-3.95	0.55	0.999820
1749	dm3.chr2L	13,488,436 – 13,488,565		2406	13,488,468 – 13,488,565	+	11	113	76.32	-2.80	0.35	0.924164
1752	dm3.chr2L	13,513,657 – 13,513,731	- - - intron="intron;ID=intron_CG9239:3_CG9239:4;Name=B4-in;Parent=FBtr0080513,FBtr0080514;parent_type=mRNA" - - - -	2409	13,513,657 – 13,513,731	+	6	81	74.25	-1.70	0.62	0.939159
1755	dm3.chr2L	13,534,290 – 13,534,422	- - - - - - - -	2412	13,534,290 – 13,534,385	+	4	105	74.79	-3.20	0.39	0.970907
1756	dm3.chr2L	13,537,205 – 13,537,297	- - - intron="intron;ID=intron_CG9239:2_CG9239:3;Name=B4-in;Parent=FBtr0080513,FBtr0080514;parent_type=mRNA" - - - -	2414	13,537,205 – 13,537,297	+	7	103	66.27	-2.65	0.37	0.992998
1756	dm3.chr2L	13,537,205 – 13,537,297		2415	13,537,205 – 13,537,297	-	7	103	66.27	-3.22	0.45	0.999632
1757	dm3.chr2L	13,548,801 – 13,548,860	- - - - - - - -	2416	13,548,801 – 13,548,860	+	6	62	86.40	-2.15	0.82	0.960146
1757	dm3.chr2L	13,548,801 – 13,548,860	- - - - - - - -	2417	13,548,801 – 13,548,860	-	6	62	86.40	-1.94	0.83	0.936641
1760	dm3.chr2L	13,570,208 – 13,570,301	- - - intron="intron;ID=intron_FBgn0259984:5_FBgn0259984:6;Name=kuz-in;Parent=FBtr0112886;parent_type=mRNA" - - - -	2420	13,570,208 – 13,570,301	+	10	109	73.89	-2.67	0.42	0.984214
1760	dm3.chr2L	13,570,208 – 13,570,301		2421	13,570,208 – 13,570,301	-	10	109	73.89	-1.96	0.48	0.935396
1766	dm3.chr2L	13,615,795 – 13,615,896	- - - intron="intron;ID=intron_FBgn0259984:8_FBgn0259984:9;Name=kuz-in;Parent=FBtr0080509,FBtr0080510,FBtr0100660,FBtr0112886,FBtr0301412;parent_type=mRNA" - - - -	2428	13,615,795 – 13,615,896	+	12	103	85.32	-2.12	0.78	0.966591
1768	dm3.chr2L	13,627,432 – 13,627,548	- - - intron="intron;ID=intron_FBgn0259984:8_FBgn0259984:9;Name=kuz-in;Parent=FBtr0080509,FBtr0080510,FBtr0100660,FBtr0112886,FBtr0301412;parent_type=mRNA" - - - -	2430	13,627,432 – 13,627,548	+	4	119	92.06	-2.68	0.93	0.991188
1768	dm3.chr2L	13,627,432 – 13,627,548		2431	13,627,432 – 13,627,548	-	4	119	92.06	-2.81	0.84	0.979727
1769	dm3.chr2L	13,632,865 – 13,632,963	- - - intron="intron;ID=intron_FBgn0259984:9_FBgn0259984:10;Name=kuz-in;Parent=FBtr0080509,FBtr0080510,FBtr0100660,FBtr0112886,FBtr0301412;parent_type=mRNA" - - - -	2432	13,632,865 – 13,632,963	-	9	105	75.88	-1.36	0.64	0.917987
1771	dm3.chr2L	13,673,380 – 13,673,510	- - - - - - - -	2434	13,673,380 – 13,673,510	-	12	146	75.26	-1.93	0.48	0.946070
1773	dm3.chr2L	13,693,094 – 13,693,216	- - - intron="intron;ID=intron_CG31814:2_CG31814:3;Name=CG31814-in;Parent=FBtr0080580;parent_type=mRNA" - - - -	2437	13,693,123 – 13,693,216	+	12	119	87.52	-2.03	0.80	0.908684
1774	dm3.chr2L	13,703,470 – 13,703,594	- - - intron="intron;ID=intron_CG31814:2_CG31814:3;Name=CG31814-in;Parent=FBtr0080580;parent_type=mRNA" - - - -	2439	13,703,470 – 13,703,594	+	5	124	92.10	-2.35	0.81	0.907544
1776	dm3.chr2L	13,706,590 – 13,706,683	- - - intron="intron;ID=intron_CG31814:2_CG31814:3;Name=CG31814-in;Parent=FBtr0080580;parent_type=mRNA" - - - -	2441	13,706,590 – 13,706,683	+	3	93	96.74	-1.73	0.99	0.941595
1778	dm3.chr2L	13,727,105 – 13,727,241	- - - - - - - -	2447	13,727,105 – 13,727,210	+	4	105	77.30	-2.37	0.67	0.981213
1780	dm3.chr2L	13,728,925 – 13,729,066	- - - - - - - -	2450	13,728,925 – 13,729,016	-	12	107	69.30	-0.93	0.61	0.953148
1783	dm3.chr2L	13,747,739 – 13,747,830	FBnoncoding="pre_miRNA;ID=FBtr0304512;Name=mir-968-RM;Parent=FBgn0262332;Alias=CR43039-RM;Dbxref=FlyBase_Annotation_IDs:CR43039-RM,miRBase:MI0005825" - - - - - - "mirBase_v16=dme-mir-968\|2.1e-42"	2455	13,747,739 – 13,747,830	+	9	96	78.58	-2.33	0.75	0.994698
1783	dm3.chr2L	13,747,739 – 13,747,830		2456	13,747,739 – 13,747,830	-	9	96	78.58	-4.76	0.74	0.999801
1785	dm3.chr2L	13,771,113 – 13,771,207	- - - - - - - -	2458	13,771,113 – 13,771,207	+	5	98	94.56	-2.87	0.80	0.956807
1785	dm3.chr2L	13,771,113 – 13,771,207	- - - - - - - -	2459	13,771,113 – 13,771,207	-	5	98	94.56	-3.41	0.89	0.995639
1788	dm3.chr2L	13,812,356 – 13,812,478	- - - intron="intron;ID=intron_FBgn0028919:3_FBgn0028919:4;Name=CG16865-in;Parent=FBtr0080540;parent_type=mRNA" - - - -	2462	13,812,356 – 13,812,478	+	5	130	82.20	-2.81	0.64	0.975931
1792	dm3.chr2L	13,835,541 – 13,835,661	- - - - - - - -	2466	13,835,541 – 13,835,661	-	5	120	97.50	-2.80	0.94	0.988845
1793	dm3.chr2L	13,888,096 – 13,888,200	- - - intron="intron;ID=intron_CG31811:9_CG31811:2;Name=cenG1A-in;Parent=FBtr0080547;parent_type=mRNA" - - - -	2468	13,888,099 – 13,888,200	-	4	104	95.49	-2.07	0.95	0.956583
1795	dm3.chr2L	13,894,169 – 13,894,291	- - - intron="intron;ID=intron_CG31811:2_CG31811:3;Name=cenG1A-in;Parent=FBtr0080546,FBtr0080547;parent_type=mRNA" - - - -	2471	13,894,194 – 13,894,291	+	4	97	96.91	-2.21	0.96	0.970498
1796	dm3.chr2L	13,919,429 – 13,919,529	- - - intron="intron;ID=intron_CG17988:7_CG17988:8;Name=Ance-3-in;Parent=FBtr0100327;parent_type=mRNA" - - - -	2472	13,919,429 – 13,919,529	+	11	110	80.88	-2.44	0.53	0.949656
1799	dm3.chr2L	13,944,811 – 13,944,960	- - - - - - - -	2475	13,944,811 – 13,944,920	-	11	119	76.26	-2.93	0.71	0.999285
1799	dm3.chr2L	13,944,811 – 13,944,960	- - - - - - - -	2476	13,944,850 – 13,944,960	-	12	118	73.86	-2.97	0.60	0.999533
1800	dm3.chr2L	13,973,822 – 13,973,924	- - - - - - - -	2477	13,973,822 – 13,973,924	+	3	102	91.28	-6.46	0.74	0.999027
1800	dm3.chr2L	13,973,822 – 13,973,924	- - - - - - - -	2478	13,973,822 – 13,973,924	-	3	102	91.28	-8.43	0.77	0.991873
1803	dm3.chr2L	14,010,554 – 14,010,646	FBnoncoding="tRNA;ID=FBtr0080609;Name=tRNA:Q:34E-RA;Parent=FBgn0028909;Dbxref=FlyBase_Annotation_IDs:CR31838-RA;score_text=Weakly" tRNAscann="Gln_chr2L_trna28" - - "Rfam_10.0=RF00005;tRNA;ABMZ01039818.1/1-61\|8.9e-23" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|2.2e-23" "unique_Noncode_2.0=u183049_mRNAlike\|2.0e-23" -	2481	14,010,554 – 14,010,646	+	12	105	84.17	-1.60	0.89	0.951775
1803	dm3.chr2L	14,010,554 – 14,010,646		2482	14,010,554 – 14,010,646	-	12	105	84.17	-1.57	0.91	0.955972
1806	dm3.chr2L	14,045,808 – 14,045,905	- - - intron="intron;ID=intron_FBgn0028875:3_FBgn0028875:4;Name=nAcRalpha-34E-in;Parent=FBtr0080594,FBtr0300594,FBtr0301836,FBtr0304598;parent_type=mRNA" - - - -	2485	14,045,808 – 14,045,902	-	5	94	95.96	-2.75	0.91	0.984633
1809	dm3.chr2L	14,066,744 – 14,066,841	- - - intron="intron;ID=intron_FBgn0028875:5_FBgn0028875:6;Name=nAcRalpha-34E-in;Parent=FBtr0080594,FBtr0300594,FBtr0301836,FBtr0304598;parent_type=mRNA" - - - -	2490	14,066,744 – 14,066,841	-	8	110	62.04	-2.04	0.67	0.999636
1810	dm3.chr2L	14,069,181 – 14,069,238	- - - intron="intron;ID=intron_FBgn0028875:6_FBgn0028875:7;Name=nAcRalpha-34E-in;Parent=FBtr0080594,FBtr0300594,FBtr0301836,FBtr0304598;parent_type=mRNA" - - - -	2491	14,069,181 – 14,069,238	+	5	57	96.14	-3.49	0.97	0.997854
1810	dm3.chr2L	14,069,181 – 14,069,238		2492	14,069,181 – 14,069,238	-	5	57	96.14	-1.98	1.00	0.977919
1814	dm3.chr2L	14,094,833 – 14,094,942	- - - - - - - -	2496	14,094,833 – 14,094,942	-	5	120	76.83	-2.27	0.53	0.928038
1815	dm3.chr2L	14,097,222 – 14,097,333	- - - - - - - -	2497	14,097,222 – 14,097,333	-	12	116	64.63	-1.68	0.32	0.905353
1817	dm3.chr2L	14,125,222 – 14,125,314	- - - - - - - -	2499	14,125,222 – 14,125,314	+	5	118	54.97	-1.18	0.53	0.988860
1818	dm3.chr2L	14,128,380 – 14,128,434	- - - - - - - -	2500	14,128,380 – 14,128,434	+	4	64	62.99	-1.92	0.59	0.991638
1819	dm3.chr2L	14,135,040 – 14,135,146	- - CDS="CDS;ID=CDS_FBgn0028906:1_861;Name=CG17341-cds;Parent=FBtr0305557;parent_type=mRNA" - - - - -	2501	14,135,040 – 14,135,146	-	12	120	92.81	-1.99	0.92	0.951168
1822	dm3.chr2L	14,146,572 – 14,146,664	- - - intron="intron;ID=intron_FBgn0028906:1_FBgn0028906:2;Name=CG17341-in;Parent=FBtr0305557;parent_type=mRNA" - - - -	2504	14,146,572 – 14,146,664	+	3	92	97.09	-1.75	1.00	0.952695
1823	dm3.chr2L	14,148,263 – 14,148,357	- - - intron="intron;ID=intron_FBgn0028906:1_FBgn0028906:2;Name=CG17341-in;Parent=FBtr0305557;parent_type=mRNA" - - - -	2505	14,148,263 – 14,148,357	+	7	101	71.29	-2.04	0.51	0.987295
1824	dm3.chr2L	14,157,981 – 14,158,135	- - CDS="CDS;ID=CDS_FBgn0028906:4_861;Name=CG17341-cds;Parent=FBtr0305557;parent_type=mRNA" - - - - -	2506	14,157,981 – 14,158,095	+	4	114	58.28	-1.21	0.47	0.928190
1824	dm3.chr2L	14,157,981 – 14,158,135		2507	14,157,981 – 14,158,095	-	4	114	58.28	-1.57	0.54	0.993102
1831	dm3.chr2L	14,220,323 – 14,220,499	- - - intron="intron;ID=intron_CG4551:3_CG4551:4;Name=smi35A-in;Parent=FBtr0089290,FBtr0089289,FBtr0089288,FBtr0100447,FBtr0100448;parent_type=mRNA" - - - -	2518	14,220,352 – 14,220,446	-	6	115	77.18	-2.12	0.56	0.935947
1832	dm3.chr2L	14,230,537 – 14,230,648	- - - intron="intron;ID=intron_CG4551:12_CG4551:13;Name=smi35A-in;Parent=FBtr0089289;parent_type=mRNA" - - - -	2520	14,230,537 – 14,230,648	+	7	113	58.40	-1.15	0.41	0.953335
1833	dm3.chr2L	14,235,996 – 14,236,112	- - - - - - - -	2521	14,235,996 – 14,236,112	+	7	117	84.53	-2.98	0.62	0.986209
1834	dm3.chr2L	14,243,274 – 14,243,405	- - - - - - - -	2522	14,243,274 – 14,243,375	+	6	105	87.35	-3.08	0.71	0.988852
1834	dm3.chr2L	14,243,274 – 14,243,405	- - - - - - - -	2523	14,243,314 – 14,243,405	+	6	100	79.76	-2.80	0.70	0.994521
1837	dm3.chr2L	14,270,917 – 14,271,024	- - - intron="intron;ID=intron_FBgn0261563:1_FBgn0261563:2;Name=wb-in;Parent=FBtr0302731,FBtr0305063;parent_type=mRNA" - - - -	2528	14,270,917 – 14,271,024	-	8	115	74.33	-1.74	0.60	0.977234
1841	dm3.chr2L	14,369,723 – 14,369,846	- - - - - - - -	2532	14,369,723 – 14,369,824	-	5	101	86.09	-1.77	0.93	0.959633
1841	dm3.chr2L	14,369,723 – 14,369,846	- - - - - - - -	2533	14,369,753 – 14,369,846	+	5	93	89.12	-2.62	0.73	0.929744
1842	dm3.chr2L	14,375,091 – 14,375,181	- - - - - - - -	2535	14,375,091 – 14,375,181	+	8	96	84.43	-2.05	0.71	0.913154
1845	dm3.chr2L	14,393,652 – 14,393,787	- - - intron="intron;ID=intron_FBgn0004858:3_FBgn0004858:2;Name=elB-in;Parent=FBtr0080637;parent_type=mRNA" - - - -	2539	14,393,682 – 14,393,787	+	8	117	67.33	-1.22	0.51	0.917403
1847	dm3.chr2L	14,399,770 – 14,399,860	- - - intron="intron;ID=intron_FBgn0004858:3_FBgn0004858:2;Name=elB-in;Parent=FBtr0080637;parent_type=mRNA" - - - -	2542	14,399,770 – 14,399,860	-	4	90	89.26	-2.29	0.88	0.969241
1848	dm3.chr2L	14,400,452 – 14,400,543	- - - intron="intron;ID=intron_FBgn0004858:3_FBgn0004858:2;Name=elB-in;Parent=FBtr0080637;parent_type=mRNA" - - - -	2543	14,400,452 – 14,400,543	+	12	108	76.27	-2.26	0.57	0.991738
1852	dm3.chr2L	14,411,554 – 14,411,654	- - - - - - - -	2547	14,411,554 – 14,411,654	-	10	114	68.57	-2.09	0.38	0.973621
1855	dm3.chr2L	14,420,737 – 14,420,827	- - - - - - - -	2552	14,420,737 – 14,420,827	-	6	94	87.58	-2.27	0.86	0.976906
1857	dm3.chr2L	14,425,904 – 14,426,057	- - - - - - - -	2555	14,425,934 – 14,426,036	-	5	103	85.77	-1.80	0.89	0.940026
1857	dm3.chr2L	14,425,904 – 14,426,057	- - - - - - - -	2556	14,425,964 – 14,426,056	-	7	95	63.90	-1.89	0.45	0.991497
1859	dm3.chr2L	14,431,496 – 14,431,673	- - - - - - - -	2560	14,431,562 – 14,431,673	+	9	116	79.77	-2.44	0.61	0.986233
1859	dm3.chr2L	14,431,496 – 14,431,673	- - - - - - - -	2561	14,431,562 – 14,431,673	-	9	116	79.77	-2.13	0.59	0.951860
1865	dm3.chr2L	14,456,974 – 14,457,076	- - - - - - - -	2568	14,456,974 – 14,457,076	+	12	110	83.99	-2.58	0.61	0.966520
1866	dm3.chr2L	14,457,785 – 14,457,895	- - - - - - - -	2570	14,457,785 – 14,457,880	+	12	112	89.21	-2.46	0.84	0.977896
1866	dm3.chr2L	14,457,785 – 14,457,895	- - - - - - - -	2571	14,457,785 – 14,457,880	-	12	112	89.21	-1.86	0.89	0.939119
1871	dm3.chr2L	14,502,546 – 14,502,611	- - - - - - - -	2578	14,502,546 – 14,502,611	+	12	73	85.56	-5.09	0.72	0.999674
1871	dm3.chr2L	14,502,546 – 14,502,611	- - - - - - - -	2579	14,502,546 – 14,502,611	-	12	73	85.56	-4.92	0.74	0.999637
1876	dm3.chr2L	14,518,087 – 14,518,159	FBnoncoding="tRNA;ID=FBtr0089613;Name=tRNA:G3:35Ba-RA;Parent=FBgn0011862;Dbxref=FlyBase_Annotation_IDs:CR31977-RA;score_text=Weakly" tRNAscann="Gly_chr2L_trna19" - - "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|7.3e-32" "Noncode_2.0=n122145_u121243_DQ595536_piRNA_human\|8.4e-07" "unique_Noncode_2.0=u121243_piRNA_human\|7.3e-07" -	2586	14,518,087 – 14,518,159	-	13	78	84.19	-1.51	0.82	0.901079
1877	dm3.chr2L	14,518,608 – 14,518,696	FBnoncoding="tRNA;ID=FBtr0080665;Name=tRNA:G3:35Bc-RA;Parent=FBgn0011864;Dbxref=FlyBase_Annotation_IDs:CR31982-RA;score_text=Weakly" tRNAscann="Gly_chr2L_trna26" - - "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|9.4e-32" - "unique_Noncode_2.0=u121243_piRNA_human\|9.5e-07" -	2587	14,518,608 – 14,518,696	+	15	94	75.49	-1.37	0.81	0.987620
1877	dm3.chr2L	14,518,608 – 14,518,696		2588	14,518,608 – 14,518,696	-	15	94	75.49	-1.59	0.90	0.991924
1878	dm3.chr2L	14,522,767 – 14,522,857	- - - - - - - -	2589	14,522,767 – 14,522,857	+	5	103	74.31	-2.99	0.66	0.998335
1881	dm3.chr2L	14,529,837 – 14,529,947	- - - - - - - -	2592	14,529,837 – 14,529,934	+	12	120	89.59	-3.25	0.89	0.997178
				2593	14,529,837 – 14,529,934	-	12	120	89.59	-2.42	0.89	0.984122
				2594	14,529,856 – 14,529,947	+	10	118	82.50	-3.33	0.92	0.998616
				2595	14,529,856 – 14,529,947	-	10	118	82.50	-2.18	0.91	0.989942
1882	dm3.chr2L	14,530,526 – 14,530,617	FBnoncoding="tRNA;ID=FBtr0080664;Name=tRNA:G3:35Bd-RA;Parent=FBgn0011865;Dbxref=FlyBase_Annotation_IDs:CR31981-RA;score_text=Weakly" tRNAscann="Gly_chr2L_trna25" - - "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|9.8e-32" - "unique_Noncode_2.0=u121243_piRNA_human\|9.9e-07" -	2596	14,530,526 – 14,530,617	+	14	105	79.06	-2.03	0.92	0.994108
1882	dm3.chr2L	14,530,526 – 14,530,617		2597	14,530,526 – 14,530,617	-	14	105	79.06	-1.70	0.95	0.988161
1888	dm3.chr2L	14,552,971 – 14,553,064	- - - - - - - -	2605	14,552,971 – 14,553,064	+	10	114	63.65	-0.97	0.50	0.900591
1893	dm3.chr2L	14,581,886 – 14,581,981	- - - - - - - -	2610	14,581,886 – 14,581,981	+	7	109	66.55	-2.25	0.35	0.958942
1898	dm3.chr2L	14,598,834 – 14,598,944	FBnoncoding="tRNA;ID=FBtr0080646;Name=tRNA:P:35Ba-RA;Parent=FBgn0028912;Dbxref=FlyBase_Annotation_IDs:CR31983-RA;score_text=Weakly" tRNAscann="Pro_chr2L_trna20" - - "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|1.8e-24" - - -	2617	14,598,834 – 14,598,944	-	11	114	79.05	-1.61	0.74	0.976371
1905	dm3.chr2L	14,627,421 – 14,627,501	- - - - - - - -	2625	14,627,421 – 14,627,501	-	9	86	85.94	-2.84	0.55	0.939929
1908	dm3.chr2L	14,651,237 – 14,651,302	- - - intron="intron;ID=intron_FBgn0003016:12_FBgn0003016:11;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2629	14,651,237 – 14,651,302	+	3	65	56.92	-0.97	0.77	0.977928
1908	dm3.chr2L	14,651,237 – 14,651,302		2630	14,651,237 – 14,651,302	-	3	65	56.92	-1.26	0.55	0.951300
1910	dm3.chr2L	14,659,244 – 14,659,337	- - - intron="intron;ID=intron_FBgn0003016:12_FBgn0003016:11;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2632	14,659,244 – 14,659,337	+	9	116	77.75	-2.58	0.55	0.979832
1911	dm3.chr2L	14,663,386 – 14,663,452	- - - intron="intron;ID=intron_FBgn0003016:12_FBgn0003016:11;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2633	14,663,386 – 14,663,452	+	11	84	63.29	-1.52	0.55	0.991823
1911	dm3.chr2L	14,663,386 – 14,663,452		2634	14,663,386 – 14,663,452	-	11	84	63.29	-2.59	0.46	0.999066
1912	dm3.chr2L	14,665,248 – 14,665,341	- - - intron="intron;ID=intron_FBgn0003016:12_FBgn0003016:11;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2635	14,665,248 – 14,665,341	-	9	117	77.39	-2.46	0.68	0.993161
1913	dm3.chr2L	14,665,351 – 14,665,462	- - - intron="intron;ID=intron_FBgn0003016:12_FBgn0003016:11;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2638	14,665,351 – 14,665,462	+	5	112	82.75	-2.87	0.60	0.956948
1913	dm3.chr2L	14,665,351 – 14,665,462		2639	14,665,351 – 14,665,462	-	5	112	82.75	-2.79	0.56	0.912607
1914	dm3.chr2L	14,666,126 – 14,666,229	- - - intron="intron;ID=intron_FBgn0003016:12_FBgn0003016:11;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2640	14,666,126 – 14,666,229	+	8	112	66.10	-1.93	0.41	0.983593
1918	dm3.chr2L	14,751,444 – 14,751,620	- - - - - - - -	2645	14,751,444 – 14,751,546	+	11	119	85.45	-2.46	0.70	0.966384
1918	dm3.chr2L	14,751,444 – 14,751,620	- - - - - - - -	2646	14,751,467 – 14,751,586	+	12	120	92.34	-2.19	0.97	0.985451
1919	dm3.chr2L	14,754,250 – 14,754,345	- - - - - - - -	2648	14,754,250 – 14,754,345	+	9	107	82.55	-1.89	0.72	0.900210
1922	dm3.chr2L	14,783,057 – 14,783,109	- - - - - - - -	2652	14,783,057 – 14,783,109	+	7	60	67.63	-3.11	0.35	0.992941
1922	dm3.chr2L	14,783,057 – 14,783,109	- - - - - - - -	2653	14,783,057 – 14,783,109	-	7	60	67.63	-2.69	0.47	0.996663
1923	dm3.chr2L	14,783,348 – 14,783,469	- - CDS="CDS;ID=CDS_CG18636:4_754;Name=CG18636-cds;Parent=FBtr0080688;parent_type=mRNA" - - - - -	2655	14,783,348 – 14,783,469	-	3	121	90.11	-2.18	0.92	0.967769
1925	dm3.chr2L	14,789,864 – 14,789,921	- - - - - - - -	2657	14,789,864 – 14,789,921	+	10	62	77.69	-1.56	0.62	0.921317
1925	dm3.chr2L	14,789,864 – 14,789,921	- - - - - - - -	2658	14,789,864 – 14,789,921	-	10	62	77.69	-1.82	0.61	0.962048
1930	dm3.chr2L	14,840,584 – 14,840,684	- - - - - - - -	2663	14,840,584 – 14,840,684	+	9	103	71.08	-1.50	0.50	0.937470
1930	dm3.chr2L	14,840,584 – 14,840,684	- - - - - - - -	2664	14,840,584 – 14,840,684	-	9	103	71.08	-2.70	0.59	0.999461
1933	dm3.chr2L	14,872,919 – 14,873,024	- - - - - - - -	2667	14,872,919 – 14,873,024	-	11	116	55.53	-0.45	0.50	0.933287
1935	dm3.chr2L	14,877,807 – 14,877,900	- - - - - - - -	2669	14,877,807 – 14,877,900	+	11	117	70.79	-2.36	0.38	0.950723
1935	dm3.chr2L	14,877,807 – 14,877,900	- - - - - - - -	2670	14,877,807 – 14,877,900	-	11	117	70.79	-2.07	0.52	0.987712
1936	dm3.chr2L	14,894,426 – 14,894,546	- - - - - - - -	2671	14,894,426 – 14,894,546	-	12	128	90.34	-1.63	0.91	0.913630
1937	dm3.chr2L	14,901,619 – 14,901,760	- - - - - - - -	2672	14,901,619 – 14,901,732	+	10	117	71.13	-1.21	0.64	0.980982
1939	dm3.chr2L	14,911,430 – 14,911,550	- - - intron="intron;ID=intron_FBgn0259213:2_FBgn0259213:1;Name=CG42313-in;Parent=FBtr0299711;parent_type=mRNA" - - - -	2676	14,911,430 – 14,911,550	-	7	132	73.97	-2.09	0.45	0.910802
1942	dm3.chr2L	14,930,415 – 14,930,475	- - - - - - - -	2680	14,930,415 – 14,930,475	+	5	60	98.67	-1.72	1.00	0.942842
1942	dm3.chr2L	14,930,415 – 14,930,475	- - - - - - - -	2681	14,930,415 – 14,930,475	-	5	60	98.67	-1.51	1.00	0.906088
1943	dm3.chr2L	14,958,886 – 14,958,984	- - - intron="intron;ID=intron_FBgn0259213:19_FBgn0259213:18;Name=CG42313-in;Parent=FBtr0299711;parent_type=mRNA" - - - -	2683	14,958,886 – 14,958,984	-	5	98	97.96	-2.48	0.96	0.982742
1947	dm3.chr2L	15,025,450 – 15,025,560	- - - - - - - -	2688	15,025,456 – 15,025,560	-	14	114	68.92	-0.90	0.52	0.906234
1948	dm3.chr2L	15,030,707 – 15,030,833	- - - - - - - -	2689	15,030,707 – 15,030,833	-	14	144	69.61	-2.37	0.52	0.998819
1952	dm3.chr2L	15,057,998 – 15,058,049	- - - - - - - -	2694	15,057,998 – 15,058,049	+	3	53	60.38	-2.81	0.26	0.902767
1953	dm3.chr2L	15,064,058 – 15,064,153	- - - intron="intron;ID=intron_FBgn0262526:1_FBgn0262526:2;Name=vas-in;Parent=FBtr0304854,FBtr0304855;parent_type=mRNA" - - - -	2695	15,064,058 – 15,064,153	-	8	101	80.20	-3.02	0.80	0.998416
1964	dm3.chr2L	15,126,115 – 15,126,222	- - - - - - - -	2707	15,126,115 – 15,126,222	+	11	121	85.39	-2.66	0.72	0.984657
1965	dm3.chr2L	15,172,026 – 15,172,116	- - - intron="intron;ID=intron_FBgn0028888:5_FBgn0028888:4;Name=CG4168-in;Parent=FBtr0305559;parent_type=mRNA" - - - -	2708	15,172,026 – 15,172,116	+	12	110	79.69	-1.49	0.76	0.916718
1966	dm3.chr2L	15,181,162 – 15,181,255	- - - - - - - -	2709	15,181,162 – 15,181,255	-	12	105	77.44	-1.54	0.60	0.908433
1971	dm3.chr2L	15,266,224 – 15,266,299	- - - - - - - -	2714	15,266,224 – 15,266,299	-	7	90	60.63	-1.43	0.43	0.960131
1972	dm3.chr2L	15,272,005 – 15,272,119	- - - - - - - -	2715	15,272,005 – 15,272,119	+	3	119	73.86	-2.19	0.59	0.913273
1974	dm3.chr2L	15,296,480 – 15,296,581	- - - - - - - -	2717	15,296,480 – 15,296,581	-	5	109	88.77	-2.88	0.67	0.942037
1977	dm3.chr2L	15,344,847 – 15,344,969	- - - - - - - -	2721	15,344,847 – 15,344,969	+	11	139	71.13	-2.94	0.28	0.956215
1981	dm3.chr2L	15,368,875 – 15,368,990	- - - - - - - -	2726	15,368,875 – 15,368,989	-	12	117	75.68	-3.47	0.70	0.999770
				2727	15,368,876 – 15,368,990	+	12	117	75.97	-1.79	0.51	0.922810
				2728	15,368,876 – 15,368,990	-	12	117	75.97	-3.62	0.73	0.999778
1984	dm3.chr2L	15,377,460 – 15,377,558	- - - - - - - -	2732	15,377,460 – 15,377,558	-	6	102	88.93	-2.83	0.95	0.996385
1985	dm3.chr2L	15,378,168 – 15,378,284	- - - - - - - -	2733	15,378,168 – 15,378,284	+	8	118	77.28	-2.79	0.60	0.996577
1986	dm3.chr2L	15,378,754 – 15,378,808	- - - - - - - -	2734	15,378,754 – 15,378,808	-	5	54	88.87	-1.80	0.90	0.923389
1990	dm3.chr2L	15,388,940 – 15,389,034	- - - - - - - -	2738	15,388,940 – 15,389,034	+	9	99	82.69	-2.02	0.65	0.925323
1991	dm3.chr2L	15,391,110 – 15,391,201	- - - - - - - -	2739	15,391,110 – 15,391,201	-	9	103	70.47	-2.58	0.44	0.995929
1994	dm3.chr2L	15,397,186 – 15,397,294	- - - - - - - -	2742	15,397,186 – 15,397,294	-	8	110	69.98	-1.81	0.48	0.955073
1995	dm3.chr2L	15,397,716 – 15,397,813	- - - - - - - -	2743	15,397,716 – 15,397,813	+	5	108	81.51	-1.79	0.80	0.922273
1996	dm3.chr2L	15,400,730 – 15,400,837	- - - - - - - -	2744	15,400,730 – 15,400,837	+	9	114	70.89	-1.92	0.45	0.970591
1997	dm3.chr2L	15,406,283 – 15,406,381	- - - - - - - -	2746	15,406,283 – 15,406,381	-	11	119	87.87	-3.01	0.95	0.997658
1999	dm3.chr2L	15,412,515 – 15,412,614	- - - - - - - -	2749	15,412,515 – 15,412,614	+	11	103	81.73	-2.27	0.63	0.963780
2000	dm3.chr2L	15,415,622 – 15,415,720	- - - - - - - -	2750	15,415,622 – 15,415,720	+	6	104	74.56	-1.73	0.71	0.977598
2001	dm3.chr2L	15,422,892 – 15,422,987	- - - - - - - -	2751	15,422,892 – 15,422,987	+	7	108	78.28	-2.27	0.65	0.976946
2006	dm3.chr2L	15,489,361 – 15,489,492	- - - - - - - -	2756	15,489,361 – 15,489,468	+	4	107	90.32	-3.65	0.87	0.997708
2007	dm3.chr2L	15,493,077 – 15,493,172	- - - - - - - -	2758	15,493,077 – 15,493,172	+	6	117	78.91	-2.03	0.66	0.921408
2008	dm3.chr2L	15,499,478 – 15,499,635	- - - intron="intron;ID=intron_CG4162:1_CG4162:2;Name=lace-in;Parent=FBtr0080738;parent_type=mRNA" - - - -	2760	15,499,535 – 15,499,635	+	4	100	60.77	-1.94	0.37	0.906454
2009	dm3.chr2L	15,511,885 – 15,511,980	- - - - - - - -	2761	15,511,885 – 15,511,980	-	9	110	78.21	-2.64	0.50	0.966842
2011	dm3.chr2L	15,523,057 – 15,523,152	- - - - - - - -	2763	15,523,057 – 15,523,152	+	9	113	72.84	-1.77	0.50	0.912771
2012	dm3.chr2L	15,523,952 – 15,524,046	- - - - - - - -	2765	15,523,952 – 15,524,046	+	5	109	84.43	-1.92	0.87	0.950792
2013	dm3.chr2L	15,527,666 – 15,527,758	- - - - - - - -	2766	15,527,666 – 15,527,758	+	5	116	58.88	-1.71	0.39	0.920643
2014	dm3.chr2L	15,537,755 – 15,537,821	- - - - - - - -	2767	15,537,755 – 15,537,821	+	6	66	72.22	-2.19	0.56	0.992734
2019	dm3.chr2L	15,554,931 – 15,555,043	- - - - - - - -	2773	15,554,931 – 15,555,031	+	9	102	74.71	-1.59	0.53	0.920308
2021	dm3.chr2L	15,556,199 – 15,556,274	- - - intron="intron;ID=intron_FBgn0028370:3_FBgn0028370:4;Name=kek3-in;Parent=FBtr0080752,FBtr0300848;parent_type=mRNA" - - - -	2779	15,556,199 – 15,556,274	+	12	88	73.49	-2.11	0.72	0.997131
2032	dm3.chr2L	15,682,200 – 15,682,324	- - - - - - - -	2793	15,682,200 – 15,682,299	-	12	113	76.41	-1.65	0.67	0.972745
2032	dm3.chr2L	15,682,200 – 15,682,324	- - - - - - - -	2794	15,682,232 – 15,682,324	+	12	111	82.10	-2.46	0.71	0.987058
2033	dm3.chr2L	15,717,197 – 15,717,321	- - - - - - - -	2797	15,717,197 – 15,717,296	-	12	113	76.41	-1.65	0.67	0.972745
2033	dm3.chr2L	15,717,197 – 15,717,321	- - - - - - - -	2798	15,717,229 – 15,717,321	+	12	111	82.10	-2.46	0.71	0.987058
2036	dm3.chr2L	15,740,770 – 15,740,863	- - CDS="CDS;ID=CDS_FBgn0010382:7_747;Name=CycE-cds;Parent=FBtr0080774;parent_type=mRNA" - - - - -	2802	15,740,770 – 15,740,863	-	12	109	64.71	-1.20	0.43	0.903281
2038	dm3.chr2L	15,779,374 – 15,779,456	- - - - - - - -	2804	15,779,374 – 15,779,456	-	6	82	60.68	-0.94	0.62	0.986188
2041	dm3.chr2L	15,806,388 – 15,806,486	- - - - - - - -	2807	15,806,388 – 15,806,486	-	7	110	69.03	-1.93	0.47	0.938637
2043	dm3.chr2L	15,818,218 – 15,818,312	- - - - - - - -	2810	15,818,218 – 15,818,312	-	9	104	67.85	-2.15	0.37	0.968066
2049	dm3.chr2L	15,875,769 – 15,875,862	- - - - - - - -	2817	15,875,769 – 15,875,862	+	11	115	72.29	-2.35	0.44	0.979411
2053	dm3.chr2L	15,919,187 – 15,919,305	- - - - - - - -	2821	15,919,187 – 15,919,303	+	12	119	79.27	-1.27	0.75	0.932972
2053	dm3.chr2L	15,919,187 – 15,919,305	- - - - - - - -	2823	15,919,196 – 15,919,305	+	12	120	79.28	-1.14	0.81	0.908681
2057	dm3.chr2L	15,969,018 – 15,969,148	- - - - - - - -	2831	15,969,034 – 15,969,148	-	11	119	89.44	-2.51	0.77	0.964555
2058	dm3.chr2L	15,973,689 – 15,973,782	- - - - - - - -	2832	15,973,689 – 15,973,782	-	11	104	81.69	-2.40	0.53	0.905043
2060	dm3.chr2L	15,981,117 – 15,981,245	- - - - - - - -	2834	15,981,117 – 15,981,232	+	10	115	76.91	-2.96	0.38	0.985366
2060	dm3.chr2L	15,981,117 – 15,981,245	- - - - - - - -	2836	15,981,153 – 15,981,245	+	9	106	79.98	-2.84	0.69	0.996317
2065	dm3.chr2L	15,997,625 – 15,997,715	- - - - - - - -	2842	15,997,625 – 15,997,715	-	3	99	71.88	-2.52	0.60	0.976998
2066	dm3.chr2L	16,001,768 – 16,001,866	- - - intron="intron;ID=intron_FBgn0028644:1_FBgn0028644:2;Name=beat-Ic-in;Parent=FBtr0080801;parent_type=mRNA" - - - -	2843	16,001,768 – 16,001,866	+	5	98	91.02	-3.60	0.76	0.994545
2070	dm3.chr2L	16,029,146 – 16,029,350	- - - intron="intron;ID=intron_FBgn0028644:2_FBgn0028644:3;Name=beat-Ic-in;Parent=FBtr0080801;parent_type=mRNA" - - - -	2849	16,029,250 – 16,029,350	-	11	113	72.47	-2.17	0.42	0.951832
2075	dm3.chr2L	16,085,708 – 16,085,782	- - - - - - - -	2854	16,085,708 – 16,085,782	+	4	74	93.61	-2.43	0.90	0.969856
2076	dm3.chr2L	16,090,897 – 16,091,006	- - - - - - - -	2856	16,090,897 – 16,090,995	+	12	120	89.45	-2.20	0.81	0.934480
2076	dm3.chr2L	16,090,897 – 16,091,006	- - - - - - - -	2857	16,090,897 – 16,091,006	+	12	120	89.09	-2.36	0.73	0.917176
2077	dm3.chr2L	16,104,462 – 16,104,555	- - - - - - - -	2858	16,104,462 – 16,104,555	+	11	109	72.90	-2.25	0.64	0.997768
2078	dm3.chr2L	16,125,340 – 16,125,402	- - - - - - - -	2859	16,125,340 – 16,125,402	-	6	62	93.55	-2.17	0.98	0.985972
2083	dm3.chr2L	16,179,211 – 16,179,337	- - CDS="CDS;ID=CDS_CG4894:17_724;Name=Ca-alpha1D-cds;Parent=FBtr0090004,FBtr0090003;parent_type=mRNA" - - - - -	2864	16,179,211 – 16,179,337	+	14	129	84.29	-2.38	0.58	0.950205
2084	dm3.chr2L	16,186,066 – 16,186,197	- - CDS="CDS;ID=CDS_CG4894:29_705;Name=Ca-alpha1D-cds;Parent=FBtr0090005,FBtr0090006;parent_type=mRNA" - - - - -	2865	16,186,066 – 16,186,169	+	12	113	88.31	-1.67	0.92	0.944586
2084	dm3.chr2L	16,186,066 – 16,186,197		2866	16,186,091 – 16,186,197	+	11	114	88.53	-2.09	0.87	0.964122
2086	dm3.chr2L	16,192,643 – 16,192,717	- - - - - - - -	2868	16,192,643 – 16,192,717	-	10	74	71.32	-0.95	0.57	0.914063
2090	dm3.chr2L	16,239,786 – 16,239,938	- - CDS="CDS;ID=CDS_FBgn0261999:11_843;Name=CG42817-cds;Parent=FBtr0303797;parent_type=mRNA" - - - - -	2874	16,239,786 – 16,239,938	-	12	172	75.37	-1.78	0.58	0.966219
2093	dm3.chr2L	16,256,924 – 16,257,001	- - - - - - - -	2878	16,256,924 – 16,257,001	-	6	77	61.01	-1.11	0.43	0.921747
2094	dm3.chr2L	16,272,056 – 16,272,113	- - - intron="intron;ID=intron_CG7664:2_CG7664:3;Name=crp-in;Parent=FBtr0080854;parent_type=mRNA" - - - -	2879	16,272,056 – 16,272,113	+	4	57	62.57	-2.26	0.62	0.999003
2094	dm3.chr2L	16,272,056 – 16,272,113		2880	16,272,056 – 16,272,113	-	4	57	62.57	-2.34	0.59	0.999015
2097	dm3.chr2L	16,277,875 – 16,277,928	- - - intron="intron;ID=intron_CG7664:2_CG7664:3;Name=crp-in;Parent=FBtr0080854;parent_type=mRNA" - - - -	2883	16,277,875 – 16,277,928	+	7	53	70.84	-2.00	0.45	0.941300
2101	dm3.chr2L	16,320,876 – 16,320,970	- - - intron="intron;ID=intron_CG5848:4_CG5848:5;Name=cact-in;Parent=FBtr0080844,FBtr0080845,FBtr0080846,FBtr0080847;parent_type=mRNA" - - - -	2889	16,320,876 – 16,320,970	-	6	101	68.87	-2.69	0.27	0.915394
2102	dm3.chr2L	16,339,616 – 16,339,715	- - CDS="CDS;ID=CDS_FBgn0259151:6_780;Name=CG42266-cds;Parent=FBtr0299599;parent_type=mRNA" - - - - -	2890	16,339,616 – 16,339,713	-	8	120	59.21	-2.77	0.20	0.938251
				2891	16,339,616 – 16,339,715	+	8	111	58.27	-2.76	0.25	0.994116
				2892	16,339,616 – 16,339,715	-	8	111	58.27	-3.22	0.26	0.998914
2107	dm3.chr2L	16,356,686 – 16,356,776	- - - - - - - -	2897	16,356,686 – 16,356,776	-	7	114	57.88	-1.82	0.36	0.967061
2109	dm3.chr2L	16,367,957 – 16,368,060	- - - - - - - -	2899	16,367,957 – 16,368,060	+	4	107	80.13	-2.58	0.61	0.948066
2109	dm3.chr2L	16,367,957 – 16,368,060	- - - - - - - -	2900	16,367,957 – 16,368,060	-	4	107	80.13	-2.50	0.66	0.961975
2110	dm3.chr2L	16,374,534 – 16,374,668	- - - - - - - -	2901	16,374,534 – 16,374,668	+	12	140	90.10	-2.38	0.77	0.942578
2111	dm3.chr2L	16,377,336 – 16,377,430	- - - - - - - -	2902	16,377,336 – 16,377,430	-	5	99	82.31	-1.83	0.81	0.932713
2112	dm3.chr2L	16,378,739 – 16,378,855	- - - - - - - -	2903	16,378,739 – 16,378,855	+	8	118	76.09	-2.22	0.49	0.960587
2116	dm3.chr2L	16,403,753 – 16,403,910	- - - intron="intron;ID=intron_CG5888:3_CG5888:4;Name=CG5888-in;Parent=FBtr0080880;parent_type=mRNA" - - - -	2908	16,403,793 – 16,403,898	+	7	112	70.40	-1.60	0.60	0.988878
2116	dm3.chr2L	16,403,753 – 16,403,910		2910	16,403,805 – 16,403,910	+	7	112	75.28	-1.45	0.61	0.913350
2118	dm3.chr2L	16,410,369 – 16,410,500	- - - intron="intron;ID=intron_CG5888:1_CG5888:2;Name=CG5888-in;Parent=FBtr0080880;parent_type=mRNA" - - - -	2913	16,410,382 – 16,410,500	+	8	120	82.94	-2.73	0.60	0.980583
2120	dm3.chr2L	16,413,878 – 16,413,979	- - - intron="intron;ID=intron_CG5888:1_CG5888:2;Name=CG5888-in;Parent=FBtr0080880;parent_type=mRNA" - - - -	2915	16,413,878 – 16,413,979	+	5	103	92.83	-2.54	0.82	0.941451
2127	dm3.chr2L	16,464,577 – 16,464,710	- - - - - - - -	2923	16,464,577 – 16,464,674	-	7	115	75.21	-1.92	0.55	0.911511
2128	dm3.chr2L	16,465,697 – 16,465,791	- - - - - - - -	2926	16,465,697 – 16,465,791	-	10	120	76.93	-1.18	0.89	0.946041
2132	dm3.chr2L	16,472,490 – 16,472,624	- - CDS="CDS;ID=CDS_CG4952:6_754;Name=dac-cds;Parent=FBtr0080879,FBtr0080878,FBtr0080875,FBtr0080876,FBtr0100399,FBtr0100400,FBtr0080877;parent_type=mRNA" - - - - -	2933	16,472,525 – 16,472,624	-	9	108	70.76	-1.20	0.59	0.951016
2134	dm3.chr2L	16,499,704 – 16,499,820	- - - intron="intron;ID=intron_CG4599:5_CG4599:2;Name=Tpr2-in;Parent=FBtr0080867;parent_type=mRNA" - - - -	2935	16,499,704 – 16,499,798	+	9	120	78.46	-2.40	0.68	0.988607
2134	dm3.chr2L	16,499,704 – 16,499,820		2936	16,499,704 – 16,499,798	-	9	120	78.46	-1.84	0.68	0.935362
2139	dm3.chr2L	16,554,811 – 16,554,920	- - - - - - - -	2942	16,554,811 – 16,554,913	+	9	116	77.86	-3.38	0.64	0.999304
				2943	16,554,811 – 16,554,913	-	9	116	77.86	-3.20	0.44	0.992388
				2944	16,554,817 – 16,554,920	+	9	116	80.88	-4.07	0.66	0.999608
				2945	16,554,817 – 16,554,920	-	9	116	80.88	-3.34	0.46	0.990247
2140	dm3.chr2L	16,567,477 – 16,567,581	- - - intron="intron;ID=intron_FBgn0259735:2_FBgn0259735:3;Name=CG42389-in;Parent=FBtr0300002;parent_type=mRNA" - - - -	2946	16,567,477 – 16,567,581	-	6	107	80.75	-2.24	0.61	0.941466
2141	dm3.chr2L	16,567,582 – 16,567,706	- - - intron="intron;ID=intron_FBgn0259735:2_FBgn0259735:3;Name=CG42389-in;Parent=FBtr0300002;parent_type=mRNA" - - - -	2947	16,567,582 – 16,567,690	+	4	120	71.31	-2.00	0.57	0.956331
2145	dm3.chr2L	16,596,594 – 16,596,664	- - - intron="intron;ID=intron_FBgn0259735:2_FBgn0259735:3;Name=CG42389-in;Parent=FBtr0300002;parent_type=mRNA" - - - -	2953	16,596,594 – 16,596,664	+	7	70	80.46	-2.37	0.61	0.969963
2147	dm3.chr2L	16,618,474 – 16,618,583	- - - intron="intron;ID=intron_FBgn0259735:5_FBgn0259735:6;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2956	16,618,474 – 16,618,583	+	11	125	66.59	-1.19	0.49	0.940074
2152	dm3.chr2L	16,635,005 – 16,635,097	- - - intron="intron;ID=intron_FBgn0259735:6_FBgn0259735:7;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2965	16,635,005 – 16,635,097	+	10	104	64.41	-1.25	0.45	0.955916
2152	dm3.chr2L	16,635,005 – 16,635,097		2966	16,635,005 – 16,635,097	-	10	104	64.41	-1.07	0.44	0.901723
2156	dm3.chr2L	16,638,589 – 16,638,715	- - - intron="intron;ID=intron_FBgn0259735:6_FBgn0259735:7;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2971	16,638,589 – 16,638,687	-	7	106	77.47	-1.81	0.78	0.973416
				2972	16,638,622 – 16,638,715	+	9	121	72.00	-1.96	0.52	0.938384
				2973	16,638,622 – 16,638,715	-	9	121	72.00	-2.24	0.58	0.989093
2157	dm3.chr2L	16,648,394 – 16,648,496	- - - intron="intron;ID=intron_FBgn0259735:6_FBgn0259735:7;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2974	16,648,394 – 16,648,496	-	4	109	94.65	-2.81	0.84	0.967574
2160	dm3.chr2L	16,680,400 – 16,680,510	- - - - - - - -	2977	16,680,400 – 16,680,510	+	5	110	88.73	-3.29	0.90	0.997547
2160	dm3.chr2L	16,680,400 – 16,680,510	- - - - - - - -	2978	16,680,400 – 16,680,510	-	5	110	88.73	-3.06	0.87	0.995457
2163	dm3.chr2L	16,691,526 – 16,691,619	- - - intron="intron;ID=intron_CG17161:3_CG17161:4;Name=grp-in;Parent=FBtr0080885,FBtr0080884,FBtr0080886;parent_type=mRNA" - - - -	2982	16,691,526 – 16,691,619	-	9	111	70.62	-2.20	0.50	0.990518
2165	dm3.chr2L	16,694,120 – 16,694,225	- - - intron="intron;ID=intron_CG17161:4_CG17161:5;Name=grp-in;Parent=FBtr0080885,FBtr0080884,FBtr0080886;parent_type=mRNA" - - - -	2984	16,694,120 – 16,694,225	+	6	106	61.41	-1.89	0.47	0.995527
2166	dm3.chr2L	16,697,919 – 16,698,024	FBnoncoding="pre_miRNA;ID=FBtr0304398;Name=mir-9c-RM;Parent=FBgn0262430;Alias=CR42985-RM;Dbxref=FlyBase_Annotation_IDs:CR42985-RM,miRBase:MI0000413" - - intron="intron;ID=intron_CG17161:6_CG17161:7;Name=grp-in;Parent=FBtr0080885,FBtr0080884,FBtr0080886,FBtr0100459;parent_type=mRNA" - - - "mirBase_v16=dse-mir-9c\|1.1e-47"	2986	16,697,919 – 16,698,010	+	12	109	84.13	-5.32	0.90	0.999003
				2987	16,697,919 – 16,698,010	-	12	109	84.13	-5.20	0.93	0.998804
				2988	16,697,923 – 16,698,024	+	12	116	87.14	-4.51	0.85	0.999362
				2989	16,697,923 – 16,698,024	-	12	116	87.14	-3.98	0.98	0.999011
2167	dm3.chr2L	16,698,563 – 16,698,654	FBnoncoding="pre_miRNA;ID=FBtr0304470;Name=mir-79-RM;Parent=FBgn0262452;Alias=CR43019-RM;Dbxref=FlyBase_Annotation_IDs:CR43019-RM,miRBase:MI0000374" - - intron="intron;ID=intron_CG17161:7_CG17161:8;Name=grp-in;Parent=FBtr0080885,FBtr0080884,FBtr0080886;parent_type=mRNA" "Rfam_10.0=RF00237;mir-9;AAPU01010522.1/88150-88211\|5.6e-24" "Noncode_2.0=n178700_u177798_NW_045819_miRNA_Anopheles\|8.4e-20" "unique_Noncode_2.0=u177798_miRNA_Anopheles\|7.3e-20" "mirBase_v16=dme-mir-79\|8.7e-45"	2990	16,698,563 – 16,698,654	+	13	94	80.92	-4.22	0.88	0.999406
2167	dm3.chr2L	16,698,563 – 16,698,654		2991	16,698,563 – 16,698,654	-	13	94	80.92	-4.61	0.85	0.999532
2168	dm3.chr2L	16,698,753 – 16,698,882	FBnoncoding="pre_miRNA;ID=FBtr0304345;Name=mir-9b-RM;Parent=FBgn0262413;Alias=CR42960-RM;Dbxref=FlyBase_Annotation_IDs:CR42960-RM,miRBase:MI0000415" - - intron="intron;ID=intron_CG17161:7_CG17161:8;Name=grp-in;Parent=FBtr0080885,FBtr0080884,FBtr0080886;parent_type=mRNA" - - - "mirBase_v16=dme-mir-9b\|4.9e-41"	2992	16,698,753 – 16,698,882	+	13	148	60.06	-2.85	0.36	0.999633
2168	dm3.chr2L	16,698,753 – 16,698,882		2993	16,698,753 – 16,698,882	-	13	148	60.06	-2.52	0.35	0.998785
2169	dm3.chr2L	16,724,758 – 16,724,887	FBnoncoding="pre_miRNA;ID=FBtr0304427;Name=mir-1006-RM;Parent=FBgn0262438;Alias=CR42999-RM;Dbxref=FlyBase_Annotation_IDs:CR42999-RM,miRBase:MI0005867" - - intron="intron;ID=intron_CG17332:3_CG17332:4;Name=VhaSFD-in;Parent=FBtr0080940,FBtr0080941,FBtr0080942;parent_type=mRNA" - - - "mirBase_v16=dsi-mir-1006\|9.0e-52"	2994	16,724,758 – 16,724,851	-	13	106	88.11	-2.39	0.77	0.965588
2172	dm3.chr2L	16,751,422 – 16,751,531	- - - - - - - -	2999	16,751,422 – 16,751,531	+	12	116	69.10	-2.54	0.42	0.998320
2173	dm3.chr2L	16,752,687 – 16,752,779	- - - - - - - -	3000	16,752,687 – 16,752,779	+	11	100	66.91	-1.82	0.36	0.926785
2173	dm3.chr2L	16,752,687 – 16,752,779	- - - - - - - -	3001	16,752,687 – 16,752,779	-	11	100	66.91	-1.90	0.34	0.915444
2174	dm3.chr2L	16,768,960 – 16,769,050	- - - intron="intron;ID=intron_FBgn0086783:4_FBgn0086783:5;Name=Mhc-in;Parent=FBtr0080895,FBtr0080898,FBtr0080899,FBtr0080904,FBtr0301828;parent_type=mRNA" - - - -	3002	16,768,960 – 16,769,050	+	12	104	51.05	-3.47	-0.00	0.967179
2176	dm3.chr2L	16,771,032 – 16,771,155	- - CDS="CDS;ID=CDS_FBgn0086783:9_803;Name=Mhc-cds;Parent=FBtr0080906,FBtr0080907,FBtr0301827,FBtr0301828;parent_type=mRNA" - - - - -	3005	16,771,032 – 16,771,155	+	15	142	77.28	-1.41	0.72	0.966025
2178	dm3.chr2L	16,778,674 – 16,778,773	- - - intron="intron;ID=intron_FBgn0086783:20_FBgn0086783:23;Name=Mhc-in;Parent=FBtr0080897,FBtr0080905,FBtr0080907,FBtr0301829;parent_type=mRNA" - - - -	3007	16,778,674 – 16,778,773	+	9	103	71.09	-0.75	0.68	0.913386
2180	dm3.chr2L	16,780,348 – 16,780,478	- - - intron="intron;ID=intron_FBgn0086783:22_FBgn0086783:23;Name=Mhc-in;Parent=FBtr0080895,FBtr0080896,FBtr0080899,FBtr0080902,FBtr0080904,FBtr0301827,FBtr0301828;parent_type=mRNA" - - - -	3010	16,780,348 – 16,780,449	+	7	103	67.29	-4.36	0.45	0.999958
				3011	16,780,348 – 16,780,449	-	7	103	67.29	-2.84	0.29	0.982988
				3012	16,780,380 – 16,780,478	+	7	105	69.94	-3.02	0.34	0.993330
2182	dm3.chr2L	16,785,856 – 16,785,949	- - - intron="intron;ID=intron_FBgn0086783:28_FBgn0086783:29;Name=Mhc-in;Parent=FBtr0080895,FBtr0080896,FBtr0080897,FBtr0080898,FBtr0080899,FBtr0080900,FBtr0080901,FBtr0080902,FBtr0080903,FBtr0080904,FBtr0080905,FBtr0080906,FBtr0080907,FBtr0301827,FBtr0301828,FBtr0301829;parent_type=mRNA" - - - -	3018	16,785,856 – 16,785,949	-	13	104	65.22	-0.36	0.62	0.931887
2184	dm3.chr2L	16,816,571 – 16,816,624	- - - - - - - -	3020	16,816,571 – 16,816,624	+	5	65	70.83	-1.52	0.61	0.948300
2188	dm3.chr2L	16,874,036 – 16,874,131	- - - intron="intron;ID=intron_FBgn0051781:2_FBgn0051781:3;Name=CG31781-in;Parent=FBtr0302189;parent_type=mRNA" - - - -	3025	16,874,036 – 16,874,131	-	11	103	72.97	-2.35	0.42	0.972299
2189	dm3.chr2L	16,882,620 – 16,882,718	- - - intron="intron;ID=intron_FBgn0085342:3_FBgn0085342:4;Name=CG34313-in;Parent=FBtr0112511;parent_type=mRNA" - - - -	3027	16,882,620 – 16,882,718	-	5	98	87.04	-3.56	0.74	0.996234
2190	dm3.chr2L	16,886,800 – 16,886,891	- - - - - - - -	3028	16,886,800 – 16,886,891	-	6	96	75.00	-2.08	0.71	0.992488
2192	dm3.chr2L	16,897,719 – 16,897,858	- - CDS="CDS;ID=CDS_FBgn0261671:8_857;Name=tweek-cds;Parent=FBtr0304927,FBtr0304928,FBtr0304929,FBtr0304930;parent_type=mRNA" - - - - -	3030	16,897,719 – 16,897,831	+	13	120	79.94	-2.29	0.58	0.970995
2197	dm3.chr2L	16,951,284 – 16,951,336	- - - - - - - -	3036	16,951,284 – 16,951,336	-	6	53	92.23	-1.61	0.99	0.953987
2201	dm3.chr2L	16,979,924 – 16,980,007	- - - intron="intron;ID=intron_FBgn0053179:2_FBgn0053179:3;Name=beat-IIIb-in;Parent=FBtr0273449,FBtr0273450;parent_type=mRNA" - - - -	3040	16,979,924 – 16,980,007	-	5	94	52.92	-1.25	0.50	0.990562
2202	dm3.chr2L	16,988,752 – 16,988,812	- - - intron="intron;ID=intron_FBgn0053179:4_FBgn0053179:6;Name=beat-IIIb-in;Parent=FBtr0273450;parent_type=mRNA" - - - -	3041	16,988,752 – 16,988,812	+	3	60	85.14	-2.06	1.03	0.992965
2208	dm3.chr2L	17,021,883 – 17,021,973	- - - - - - - -	3048	17,021,883 – 17,021,973	-	6	96	69.20	-1.31	0.53	0.900541
2210	dm3.chr2L	17,047,242 – 17,047,333	- - CDS="CDS;ID=CDS_FBgn0032625:1_835;Name=CG15136-cds;Parent=FBtr0080954;parent_type=mRNA" - - - - -	3050	17,047,242 – 17,047,333	+	6	94	77.25	-2.03	0.60	0.954058
2215	dm3.chr2L	17,075,948 – 17,076,059	- - - - - - - -	3055	17,075,948 – 17,076,055	-	8	114	73.78	-2.82	0.31	0.935130
2215	dm3.chr2L	17,075,948 – 17,076,059	- - - - - - - -	3056	17,075,952 – 17,076,059	-	9	114	77.18	-2.93	0.41	0.985009
2216	dm3.chr2L	17,078,631 – 17,078,729	- - - - - - - -	3057	17,078,631 – 17,078,729	-	12	119	64.10	-1.31	0.41	0.919831
2220	dm3.chr2L	17,095,859 – 17,095,909	- - - - - - - -	3062	17,095,859 – 17,095,909	-	3	50	94.00	-1.50	1.07	0.982738
2222	dm3.chr2L	17,100,674 – 17,100,830	- - - - - - - -	3064	17,100,674 – 17,100,770	+	10	104	69.23	-2.55	0.37	0.993612
				3065	17,100,674 – 17,100,770	-	10	104	69.23	-2.00	0.37	0.956115
				3066	17,100,702 – 17,100,808	+	12	116	66.53	-1.40	0.47	0.955569
2234	dm3.chr2L	17,224,719 – 17,224,780	- - - intron="intron;ID=intron_CG15138:2_CG15138:3;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3081	17,224,719 – 17,224,780	+	7	61	86.34	-2.61	0.84	0.992331
2234	dm3.chr2L	17,224,719 – 17,224,780		3082	17,224,719 – 17,224,780	-	7	61	86.34	-2.33	0.77	0.970417
2237	dm3.chr2L	17,233,145 – 17,233,239	- - - intron="intron;ID=intron_CG15138:2_CG15138:3;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3086	17,233,145 – 17,233,239	+	7	113	68.79	-1.99	0.43	0.953788
2238	dm3.chr2L	17,234,336 – 17,234,395	- - - intron="intron;ID=intron_CG15138:2_CG15138:3;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3087	17,234,336 – 17,234,395	-	5	59	95.93	-2.17	0.89	0.908849
2239	dm3.chr2L	17,234,873 – 17,234,942	- - - intron="intron;ID=intron_CG15138:2_CG15138:3;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3088	17,234,873 – 17,234,942	-	5	69	98.26	-4.89	1.01	0.998773
2241	dm3.chr2L	17,257,668 – 17,257,772	- - - intron="intron;ID=intron_CG15138:1_CG15138:2;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3091	17,257,668 – 17,257,772	-	6	106	80.37	-2.16	0.61	0.935542
2246	dm3.chr2L	17,283,833 – 17,283,936	- - - - - - - -	3096	17,283,833 – 17,283,936	+	5	111	70.25	-1.75	0.56	0.958584
2247	dm3.chr2L	17,293,704 – 17,293,810	- - - - "Rfam_10.0=RF01059;mir-598;AACZ02231433.1/922-1017\|3.5e-07" - - -	3098	17,293,708 – 17,293,810	-	6	110	83.57	-2.71	0.54	0.909380
2248	dm3.chr2L	17,304,496 – 17,304,580	- - - - - - - -	3099	17,304,496 – 17,304,580	+	9	90	81.01	-3.03	0.55	0.993690
2251	dm3.chr2L	17,313,536 – 17,313,626	- - - - - - - -	3102	17,313,536 – 17,313,626	+	8	96	67.64	-1.75	0.44	0.972593
2254	dm3.chr2L	17,321,873 – 17,321,969	- - - - - - - -	3106	17,321,873 – 17,321,969	-	5	96	97.29	-2.24	1.00	0.986342
2255	dm3.chr2L	17,322,953 – 17,323,005	- - - - - - - -	3107	17,322,953 – 17,323,005	-	8	63	71.27	-2.12	0.53	0.982503
2256	dm3.chr2L	17,323,093 – 17,323,186	- - - - - - - -	3108	17,323,093 – 17,323,186	-	8	102	86.38	-3.05	0.85	0.996563
2258	dm3.chr2L	17,346,127 – 17,346,254	- - - - - - - -	3110	17,346,127 – 17,346,218	-	12	121	82.06	-2.30	0.88	0.993026
2258	dm3.chr2L	17,346,127 – 17,346,254	- - - - - - - -	3111	17,346,138 – 17,346,254	-	12	120	97.86	-2.32	0.97	0.980640
2259	dm3.chr2L	17,348,356 – 17,348,452	- - - - - - - -	3112	17,348,356 – 17,348,452	+	8	108	73.90	-1.57	0.59	0.938949
2260	dm3.chr2L	17,350,587 – 17,350,689	- - - - - - - -	3114	17,350,587 – 17,350,689	-	7	118	82.37	-2.42	0.66	0.944870
2264	dm3.chr2L	17,377,236 – 17,377,353	- - - intron="intron;ID=intron_CG6860:1_CG6860:2;Name=CG6860-in;Parent=FBtr0080968,FBtr0080969;parent_type=mRNA" - - - -	3118	17,377,236 – 17,377,326	-	6	94	72.05	-1.91	0.55	0.979653
2264	dm3.chr2L	17,377,236 – 17,377,353		3120	17,377,253 – 17,377,353	-	7	132	56.95	-1.26	0.46	0.958807
2265	dm3.chr2L	17,381,384 – 17,381,475	- - - intron="intron;ID=intron_CG6860:1_CG6860:2;Name=CG6860-in;Parent=FBtr0080968,FBtr0080969;parent_type=mRNA" - - - -	3121	17,381,384 – 17,381,475	-	7	96	73.65	-2.23	0.58	0.983516
2266	dm3.chr2L	17,398,521 – 17,398,653	- - - - - - - -	3122	17,398,521 – 17,398,613	+	6	96	76.12	-1.77	0.66	0.931682
2273	dm3.chr2L	17,512,990 – 17,513,041	- - CDS="CDS;ID=CDS_FBgn0013810:15_848;Name=Dhc36C-cds;Parent=FBtr0304742;parent_type=mRNA" - - - - -	3130	17,512,990 – 17,513,041	+	12	51	80.36	-2.29	0.64	0.980855
2273	dm3.chr2L	17,512,990 – 17,513,041		3131	17,512,990 – 17,513,041	-	12	51	80.36	-2.81	0.62	0.995181
2274	dm3.chr2L	17,538,825 – 17,538,936	- - - - - - - -	3132	17,538,825 – 17,538,933	+	5	108	94.35	-2.43	0.91	0.974307
				3133	17,538,825 – 17,538,933	-	5	108	94.35	-3.89	0.95	0.998583
				3135	17,538,828 – 17,538,936	-	5	108	93.24	-2.45	0.96	0.989820
2275	dm3.chr2L	17,547,086 – 17,547,179	- - - - - - - -	3136	17,547,086 – 17,547,179	+	6	94	72.27	-1.79	0.62	0.988229
2278	dm3.chr2L	17,566,376 – 17,566,471	FBnoncoding="pre_miRNA;ID=FBtr0304298;Name=mir-124-RM;Parent=FBgn0262398;Alias=CR42937-RM;Dbxref=FlyBase_Annotation_IDs:CR42937-RM,miRBase:MI0000373" - - - "Rfam_10.0=RF00239;mir-124;AAPT01021775.1/703690-703766\|6.2e-27" "Noncode_2.0=n178705_u177803_NW_045838_miRNA_Anopheles\|7.9e-11" "unique_Noncode_2.0=u177803_miRNA_Anopheles\|6.9e-11" "mirBase_v16=dme-mir-124\|2.4e-48"	3141	17,566,376 – 17,566,471	+	15	114	81.68	-3.70	0.89	0.999179
2278	dm3.chr2L	17,566,376 – 17,566,471		3142	17,566,376 – 17,566,471	-	15	114	81.68	-2.40	0.73	0.990449
2280	dm3.chr2L	17,574,616 – 17,574,739	FBnoncoding="pre_miRNA;ID=FBtr0304302;Name=mir-287-RM;Parent=FBgn0262400;Alias=CR42939-RM;Dbxref=FlyBase_Annotation_IDs:CR42939-RM,miRBase:MI0000381" - - - "Rfam_10.0=RF00788;mir-287;AAPQ01007040.1/1493287-1493379\|1.5e-34" - - "mirBase_v16=dme-mir-287\|4.9e-44"	3145	17,574,616 – 17,574,710	-	12	119	78.96	-2.73	0.75	0.997041
				3146	17,574,634 – 17,574,739	+	12	118	79.57	-1.94	0.69	0.967680
				3147	17,574,634 – 17,574,739	-	12	118	79.57	-2.86	0.63	0.996557
2282	dm3.chr2L	17,588,235 – 17,588,307	- - - - - - - -	3149	17,588,235 – 17,588,307	+	12	88	81.69	-2.32	0.57	0.938179
2282	dm3.chr2L	17,588,235 – 17,588,307	- - - - - - - -	3150	17,588,235 – 17,588,307	-	12	88	81.69	-2.09	0.69	0.963834
2285	dm3.chr2L	17,599,259 – 17,599,311	- - - intron="intron;ID=intron_FBgn0261089:3_FBgn0261089:4;Name=Sytalpha-in;Parent=FBtr0303255;parent_type=mRNA" - - - -	3155	17,599,259 – 17,599,311	+	6	53	78.77	-4.39	0.57	0.999752
2285	dm3.chr2L	17,599,259 – 17,599,311		3156	17,599,259 – 17,599,311	-	6	53	78.77	-5.26	0.61	0.999876
2287	dm3.chr2L	17,619,062 – 17,619,170	- - - - - - - -	3158	17,619,062 – 17,619,163	+	7	107	70.65	-2.27	0.42	0.974344
2287	dm3.chr2L	17,619,062 – 17,619,170	- - - - - - - -	3159	17,619,062 – 17,619,163	-	7	107	70.65	-2.54	0.42	0.989812
2290	dm3.chr2L	17,642,971 – 17,643,083	- - - - - - - -	3163	17,642,971 – 17,643,083	-	6	112	78.10	-1.91	0.59	0.925850
2297	dm3.chr2L	17,724,111 – 17,724,227	- - - intron="intron;ID=intron_CG7100:1_CG7100:2;Name=CadN-in;Parent=FBtr0081016,FBtr0081019,FBtr0081013,FBtr0081017,FBtr0081014,FBtr0081020,FBtr0081015,FBtr0081018,FBtr0100313,FBtr0100314,FBtr0100315,FBtr0100316;parent_type=mRNA" - - - -	3171	17,724,111 – 17,724,227	-	7	116	76.20	-2.68	0.49	0.982964
2299	dm3.chr2L	17,724,783 – 17,724,875	- - - intron="intron;ID=intron_CG7100:1_CG7100:2;Name=CadN-in;Parent=FBtr0081016,FBtr0081019,FBtr0081013,FBtr0081017,FBtr0081014,FBtr0081020,FBtr0081015,FBtr0081018,FBtr0100313,FBtr0100314,FBtr0100315,FBtr0100316;parent_type=mRNA" - - - -	3173	17,724,783 – 17,724,875	+	12	108	67.43	-1.90	0.39	0.959302
2305	dm3.chr2L	17,780,171 – 17,780,262	- - - - - - - -	3179	17,780,171 – 17,780,262	-	10	93	75.33	-1.85	0.51	0.969697
2309	dm3.chr2L	17,858,301 – 17,858,459	- - - - - - - -	3184	17,858,353 – 17,858,459	+	3	106	94.34	-3.05	0.91	0.992317
2309	dm3.chr2L	17,858,301 – 17,858,459	- - - - - - - -	3185	17,858,353 – 17,858,459	-	3	106	94.34	-3.27	0.83	0.987286
2315	dm3.chr2L	17,884,349 – 17,884,428	- - - - - - - -	3191	17,884,349 – 17,884,428	+	4	79	93.88	-2.58	0.81	0.922672
2321	dm3.chr2L	17,911,127 – 17,911,237	- - - - - - - -	3198	17,911,127 – 17,911,237	-	3	113	59.70	-2.06	0.50	0.984982
2322	dm3.chr2L	17,919,736 – 17,919,828	- - - - - - - -	3199	17,919,736 – 17,919,828	-	6	93	80.04	-2.76	0.58	0.986673
2323	dm3.chr2L	17,933,878 – 17,933,929	- - - - - - - -	3201	17,933,878 – 17,933,929	-	6	51	87.32	-2.59	0.66	0.921669
2325	dm3.chr2L	17,945,584 – 17,945,677	- - - - - - - -	3203	17,945,584 – 17,945,677	-	11	112	73.13	-1.53	0.55	0.937268
2326	dm3.chr2L	17,961,666 – 17,961,786	- - - - - - - -	3204	17,961,666 – 17,961,786	+	6	121	74.90	-1.98	0.58	0.972213
2328	dm3.chr2L	17,985,660 – 17,985,752	- - - - - - - -	3207	17,985,660 – 17,985,752	-	6	121	71.21	-2.02	0.63	0.982210
2329	dm3.chr2L	18,001,269 – 18,001,361	- - - - - - - -	3208	18,001,269 – 18,001,361	+	9	100	67.40	-1.28	0.58	0.989672
2329	dm3.chr2L	18,001,269 – 18,001,361	- - - - - - - -	3209	18,001,269 – 18,001,361	-	9	100	67.40	-1.00	0.55	0.959179
2330	dm3.chr2L	18,018,736 – 18,018,790	- - - intron="intron;ID=intron_CG15151:1_CG15151:2;Name=rdo-in;Parent=FBtr0081029;parent_type=mRNA" - - - -	3210	18,018,736 – 18,018,790	-	3	54	92.59	-1.79	1.12	0.996250
2333	dm3.chr2L	18,102,777 – 18,102,922	- - - - - - - -	3215	18,102,777 – 18,102,890	-	5	113	90.71	-2.36	0.84	0.947149
2336	dm3.chr2L	18,126,727 – 18,126,846	- - CDS="CDS;ID=CDS_FBgn0032666:5_754;Name=CG5758-cds;Parent=FBtr0081036,FBtr0081037,FBtr0081035;parent_type=mRNA" - - - - -	3220	18,126,727 – 18,126,846	+	13	147	84.22	-2.28	0.71	0.956198
2337	dm3.chr2L	18,133,376 – 18,133,494	- - CDS="CDS;ID=CDS_CG7210:4_719;Name=kel-cds;Parent=FBtr0081043;parent_type=mRNA" - - - - -	3221	18,133,376 – 18,133,481	-	10	105	72.16	-2.12	0.39	0.951824
2338	dm3.chr2L	18,148,016 – 18,148,265	- - - intron="intron;ID=intron_CG15154:1_CG15154:2;Name=Socs36E-in;Parent=FBtr0081040,FBtr0081041;parent_type=mRNA" - - - -	3223	18,148,016 – 18,148,114	-	3	99	93.49	-3.01	0.80	0.969323
2338	dm3.chr2L	18,148,016 – 18,148,265		3224	18,148,114 – 18,148,265	-	6	157	71.37	-1.77	0.54	0.953446
2341	dm3.chr2L	18,168,385 – 18,168,478	- - - intron="intron;ID=intron_FBgn0261804:4_FBgn0261804:3;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3227	18,168,385 – 18,168,478	+	3	94	97.87	-1.88	1.00	0.963508
2343	dm3.chr2L	18,177,486 – 18,177,596	- - - intron="intron;ID=intron_FBgn0261804:4_FBgn0261804:3;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3230	18,177,486 – 18,177,596	+	10	113	71.83	-3.03	0.44	0.999218
2345	dm3.chr2L	18,190,034 – 18,190,117	- - - intron="intron;ID=intron_FBgn0261804:5_FBgn0261804:4;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3232	18,190,034 – 18,190,117	-	6	87	77.15	-1.89	0.60	0.925835
2350	dm3.chr2L	18,232,210 – 18,232,311	- - - intron="intron;ID=intron_FBgn0261804:13_FBgn0261804:12;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3237	18,232,210 – 18,232,311	+	7	102	82.03	-2.50	0.66	0.985180
2350	dm3.chr2L	18,232,210 – 18,232,311		3238	18,232,210 – 18,232,311	-	7	102	82.03	-2.30	0.66	0.972230
2352	dm3.chr2L	18,233,690 – 18,233,852	- - - intron="intron;ID=intron_FBgn0261804:13_FBgn0261804:12;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3241	18,233,690 – 18,233,802	+	6	112	80.83	-2.42	0.67	0.983734
2355	dm3.chr2L	18,255,201 – 18,255,353	- - - intron="intron;ID=intron_FBgn0261804:14_FBgn0261804:13;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3246	18,255,221 – 18,255,326	+	12	120	76.49	-1.86	0.55	0.926146
2355	dm3.chr2L	18,255,201 – 18,255,353		3247	18,255,255 – 18,255,353	+	9	108	85.48	-2.94	0.69	0.990245
2359	dm3.chr2L	18,319,450 – 18,319,570	- - - - - - - -	3251	18,319,450 – 18,319,570	+	5	120	84.42	-2.89	0.61	0.969173
2359	dm3.chr2L	18,319,450 – 18,319,570	- - - - - - - -	3252	18,319,450 – 18,319,570	-	5	120	84.42	-3.83	0.75	0.998865
2361	dm3.chr2L	18,340,775 – 18,340,873	- - - intron="intron;ID=intron_FBgn0000636:1_FBgn0000636:2;Name=Fas3-in;Parent=FBtr0081051,FBtr0081052,FBtr0112804,FBtr0112805,FBtr0301391;parent_type=mRNA" - - - -	3254	18,340,775 – 18,340,873	-	11	121	82.09	-2.55	0.53	0.900225
2365	dm3.chr2L	18,369,292 – 18,369,346	- - - - - - - -	3259	18,369,292 – 18,369,346	-	7	54	90.83	-2.29	0.86	0.963682
2368	dm3.chr2L	18,386,447 – 18,386,506	- - - - - - - -	3263	18,386,447 – 18,386,506	-	5	61	86.76	-2.26	0.82	0.951191
2370	dm3.chr2L	18,399,317 – 18,399,371	- - - - - - - -	3266	18,399,317 – 18,399,371	+	3	54	98.77	-3.04	1.00	0.996232
2370	dm3.chr2L	18,399,317 – 18,399,371	- - - - - - - -	3267	18,399,317 – 18,399,371	-	3	54	98.77	-2.80	1.00	0.994462
2375	dm3.chr2L	18,472,331 – 18,472,405	FBnoncoding="pre_miRNA;ID=FBtr0304491;Name=mir-125-RM;Parent=FBgn0262456;Alias=CR43029-RM;Dbxref=FlyBase_Annotation_IDs:CR43029-RM,miRBase:MI0000417" - - - "Rfam_10.0=RF00052;lin-4;AAPU01010514.1/89436-89504\|1.9e-32" "Noncode_2.0=n178698_u177796_NW_045819_miRNA_Anopheles\|9.4e-13" "unique_Noncode_2.0=u177796_miRNA_Anopheles\|8.2e-13" "mirBase_v16=dya-mir-125\|3.9e-37"	3273	18,472,331 – 18,472,405	+	14	78	93.23	-2.25	0.92	0.979274
2375	dm3.chr2L	18,472,331 – 18,472,405		3274	18,472,331 – 18,472,405	-	14	78	93.23	-3.41	0.94	0.998135
2380	dm3.chr2L	18,539,805 – 18,539,922	- - - intron="intron;ID=intron_FBgn0085370:14_FBgn0085370:13;Name=Pde11-in;Parent=FBtr0112544,FBtr0112545,FBtr0303162,FBtr0303163;parent_type=mRNA" - - - -	3280	18,539,805 – 18,539,922	-	3	117	93.73	-2.37	0.91	0.965678
2383	dm3.chr2L	18,589,231 – 18,589,324	- - - - - - - -	3283	18,589,231 – 18,589,324	+	6	107	67.65	-1.46	0.59	0.974999
2384	dm3.chr2L	18,589,448 – 18,589,542	- - - - - - - -	3284	18,589,448 – 18,589,542	-	9	111	73.88	-1.71	0.56	0.908121
2385	dm3.chr2L	18,606,796 – 18,606,849	- - - - - - - -	3285	18,606,796 – 18,606,849	-	4	57	56.36	-2.37	0.32	0.979757
2391	dm3.chr2L	18,697,795 – 18,697,887	- - CDS="CDS;ID=CDS_CG10338:4_747;Name=CG10338-cds;Parent=FBtr0081096;parent_type=mRNA" - - - - -	3292	18,697,795 – 18,697,887	-	12	107	68.05	-1.68	0.43	0.954591
2393	dm3.chr2L	18,713,953 – 18,714,020	- - - - - - - -	3294	18,713,953 – 18,714,020	+	5	71	82.40	-3.25	0.73	0.996896
2395	dm3.chr2L	18,724,937 – 18,725,042	- - - intron="intron;ID=intron_FBgn0032707:2_FBgn0032707:1;Name=CG10348-in;Parent=FBtr0301647;parent_type=mRNA" - - - -	3296	18,724,937 – 18,725,042	+	5	134	68.88	-1.73	0.56	0.967050
2400	dm3.chr2L	18,741,610 – 18,741,700	- - - - - - - -	3301	18,741,610 – 18,741,700	+	7	105	83.15	-2.34	0.65	0.932905
2400	dm3.chr2L	18,741,610 – 18,741,700	- - - - - - - -	3302	18,741,610 – 18,741,700	-	7	105	83.15	-3.65	0.70	0.998632
2405	dm3.chr2L	18,774,737 – 18,774,859	- - - intron="intron;ID=intron_FBgn0045852:5_FBgn0045852:4;Name=ham-in;Parent=FBtr0305620,FBtr0305621;parent_type=mRNA" - - - -	3308	18,774,765 – 18,774,859	-	7	94	72.19	-1.76	0.55	0.984817
2408	dm3.chr2L	18,805,670 – 18,805,731	- - - - - - - -	3311	18,805,670 – 18,805,731	-	8	61	79.58	-2.76	0.56	0.990469
2412	dm3.chr2L	18,846,353 – 18,846,433	- - - intron="intron;ID=intron_CG17321:1_CG17321:2;Name=CG17321-in;Parent=FBtr0081110;parent_type=mRNA" - - - -	3315	18,846,353 – 18,846,433	-	6	82	70.45	-2.04	0.42	0.934779
2413	dm3.chr2L	18,850,744 – 18,850,850	- - - intron="intron;ID=intron_CG17321:1_CG17321:2;Name=CG17321-in;Parent=FBtr0081110;parent_type=mRNA" - - - -	3317	18,850,795 – 18,850,850	+	6	55	89.33	-2.66	0.76	0.967183
2414	dm3.chr2L	18,854,290 – 18,854,413	- - CDS="CDS;ID=CDS_CG17321:6_750;Name=CG17321-cds;Parent=FBtr0081110;parent_type=mRNA" - - - - -	3319	18,854,290 – 18,854,380	+	11	97	79.50	-2.00	0.72	0.981863
2414	dm3.chr2L	18,854,290 – 18,854,413		3321	18,854,306 – 18,854,413	+	13	120	81.80	-1.85	0.68	0.927672
2415	dm3.chr2L	18,870,026 – 18,870,076	- - - intron="intron;ID=intron_CG10619:1_CG10619:2;Name=tup-in;Parent=FBtr0081111,FBtr0081112;parent_type=mRNA" - - - -	3323	18,870,026 – 18,870,076	-	7	57	83.23	-1.63	0.97	0.973782
2420	dm3.chr2L	18,901,744 – 18,901,881	- - - - - - - -	3331	18,901,773 – 18,901,881	+	6	116	84.72	-2.05	0.75	0.924770
2424	dm3.chr2L	18,912,031 – 18,912,134	- - - - - - - -	3336	18,912,031 – 18,912,134	-	7	106	74.94	-1.81	0.59	0.915518
2430	dm3.chr2L	18,955,313 – 18,955,379	- - - - - - - -	3343	18,955,313 – 18,955,379	+	3	66	88.83	-2.63	0.85	0.977739
2430	dm3.chr2L	18,955,313 – 18,955,379	- - - - - - - -	3344	18,955,313 – 18,955,379	-	3	66	88.83	-3.16	0.93	0.996916
2437	dm3.chr2L	19,048,262 – 19,048,359	- - - - - - - -	3353	19,048,262 – 19,048,359	+	12	113	65.85	-3.07	0.62	0.999927
2437	dm3.chr2L	19,048,262 – 19,048,359	- - - - - - - -	3354	19,048,262 – 19,048,359	-	12	113	65.85	-2.40	0.58	0.999659
2440	dm3.chr2L	19,084,722 – 19,084,848	- - - - - - - -	3358	19,084,758 – 19,084,848	+	6	118	77.59	-2.35	0.68	0.982896
2440	dm3.chr2L	19,084,722 – 19,084,848	- - - - - - - -	3359	19,084,758 – 19,084,848	-	6	118	77.59	-2.93	0.57	0.991362
2444	dm3.chr2L	19,103,639 – 19,103,736	- - - - - - - -	3363	19,103,639 – 19,103,736	+	10	99	81.03	-2.28	0.62	0.959874
2445	dm3.chr2L	19,122,142 – 19,122,245	- - - - - - - -	3364	19,122,142 – 19,122,245	+	8	114	53.09	-2.04	0.26	0.973827
2445	dm3.chr2L	19,122,142 – 19,122,245	- - - - - - - -	3365	19,122,142 – 19,122,245	-	8	114	53.09	-1.71	0.49	0.999067
2452	dm3.chr2L	19,196,679 – 19,196,770	- - - intron="intron;ID=intron_CG17348:1_CG17348:2;Name=drl-in;Parent=FBtr0081195;parent_type=mRNA" - - - -	3375	19,196,679 – 19,196,770	-	7	105	62.27	-1.09	0.49	0.939982
2455	dm3.chr2L	19,209,779 – 19,209,873	- - - - - - - -	3378	19,209,779 – 19,209,873	+	5	95	92.15	-2.28	0.84	0.925603
2458	dm3.chr2L	19,233,799 – 19,233,895	- - - - - - - -	3381	19,233,799 – 19,233,895	-	11	110	75.33	-2.27	0.54	0.990338
2459	dm3.chr2L	19,234,910 – 19,235,000	- - - - - - - -	3382	19,234,910 – 19,235,000	-	6	102	64.04	-1.36	0.53	0.978136
2462	dm3.chr2L	19,252,465 – 19,252,567	- - - - - - - -	3385	19,252,465 – 19,252,567	+	5	120	74.18	-2.63	0.53	0.984485
2463	dm3.chr2L	19,265,164 – 19,265,252	- - - - - - - -	3387	19,265,164 – 19,265,252	+	6	88	64.55	-2.36	0.33	0.983789
2465	dm3.chr2L	19,270,844 – 19,270,975	- - - - - - - -	3390	19,270,875 – 19,270,975	+	4	112	60.66	-2.20	0.39	0.978982
2466	dm3.chr2L	19,271,076 – 19,271,175	- - - - - - - -	3391	19,271,076 – 19,271,175	+	10	110	82.68	-2.38	0.68	0.972538
2476	dm3.chr2L	19,308,608 – 19,308,658	- - - - - - - -	3402	19,308,608 – 19,308,658	-	4	50	92.00	-2.97	0.83	0.984852
2478	dm3.chr2L	19,322,550 – 19,322,688	- - - - - - - -	3405	19,322,572 – 19,322,688	-	6	116	74.80	-1.53	0.63	0.916453
2485	dm3.chr2L	19,397,041 – 19,397,151	- - - - - - - -	3413	19,397,041 – 19,397,151	+	6	117	66.47	-2.23	0.32	0.921027
2487	dm3.chr2L	19,412,909 – 19,413,003	- - - intron="intron;ID=intron_CG31794:1_CG31794:2;Name=Pax-in;Parent=FBtr0081213;parent_type=mRNA" - - - -	3416	19,412,909 – 19,413,003	+	4	95	74.42	-2.53	0.58	0.982547
2489	dm3.chr2L	19,452,129 – 19,452,261	- - CDS="CDS;ID=CDS_CG10223:2_705;Name=Top2-cds;Parent=FBtr0081287;parent_type=mRNA" - - - - -	3420	19,452,141 – 19,452,261	-	15	120	78.28	-2.32	0.45	0.951708
2490	dm3.chr2L	19,465,166 – 19,465,290	- - CDS="CDS;ID=CDS_FBgn0000964:1_802;Name=tj-cds;Parent=FBtr0301669;parent_type=mRNA" - - - - -	3421	19,465,166 – 19,465,256	+	12	111	70.12	-1.98	0.38	0.923815
2490	dm3.chr2L	19,465,166 – 19,465,290		3422	19,465,166 – 19,465,256	-	12	111	70.12	-1.74	0.55	0.989599
2491	dm3.chr2L	19,469,487 – 19,469,589	- - - - - - - -	3424	19,469,487 – 19,469,589	-	8	105	84.40	-2.85	0.69	0.990236
2492	dm3.chr2L	19,472,032 – 19,472,157	- - - - - - - -	3425	19,472,032 – 19,472,123	-	9	120	75.82	-2.59	0.55	0.985598
2492	dm3.chr2L	19,472,032 – 19,472,157	- - - - - - - -	3426	19,472,065 – 19,472,157	-	8	103	65.66	-1.39	0.46	0.934586
2494	dm3.chr2L	19,477,800 – 19,477,947	- - - - - - - -	3429	19,477,800 – 19,477,918	-	12	119	83.72	-1.90	0.72	0.914715
2494	dm3.chr2L	19,477,800 – 19,477,947	- - - - - - - -	3431	19,477,839 – 19,477,947	-	12	115	74.69	-1.76	0.57	0.960299
2495	dm3.chr2L	19,480,876 – 19,481,006	- - - - - - - -	3432	19,480,876 – 19,480,976	+	12	110	79.15	-2.30	0.47	0.914776
2498	dm3.chr2L	19,517,552 – 19,517,706	- - - - - - - -	3437	19,517,552 – 19,517,706	+	4	162	64.89	-2.20	0.40	0.953381
2501	dm3.chr2L	19,549,764 – 19,549,863	- - - - - - - -	3442	19,549,764 – 19,549,863	+	9	112	51.11	-0.64	0.54	0.984835
2502	dm3.chr2L	19,558,457 – 19,558,601	- - - intron="intron;ID=intron_CG13079:1_CG13079:2;Name=CG13079-in;Parent=FBtr0081255;parent_type=mRNA" - - - -	3443	19,558,457 – 19,558,601	+	5	151	84.19	-2.36	0.80	0.978132
2503	dm3.chr2L	19,569,495 – 19,569,553	FBnoncoding="pre_miRNA;ID=FBtr0304504;Name=mir-2a-2-RM;Parent=FBgn0262460;Alias=CR43035-RM;Dbxref=FlyBase_Annotation_IDs:CR43035-RM,miRBase:MI0000118" - - intron="intron;ID=intron_FBgn0005672:2_FBgn0005672:1;Name=spi-in;Parent=FBtr0081269,FBtr0081268,FBtr0100597;parent_type=mRNA" "Rfam_10.0=RF00047;mir-2;AANI01013749.1/161816-161880\|1.3e-23" - - "mirBase_v16=dya-mir-2a-2\|1.0e-27"	3445	19,569,495 – 19,569,553	+	14	62	93.58	-4.47	0.99	0.999091
2503	dm3.chr2L	19,569,495 – 19,569,553		3446	19,569,495 – 19,569,553	-	14	62	93.58	-6.02	0.98	0.997456
2504	dm3.chr2L	19,572,771 – 19,572,842	- - - - - - - -	3448	19,572,771 – 19,572,842	-	4	74	80.46	-1.88	0.84	0.957208
2505	dm3.chr2L	19,573,774 – 19,573,864	- - - - - - - -	3449	19,573,774 – 19,573,864	+	5	90	73.67	-3.14	0.63	0.999352
2505	dm3.chr2L	19,573,774 – 19,573,864	- - - - - - - -	3450	19,573,774 – 19,573,864	-	5	90	73.67	-2.42	0.57	0.993133
2507	dm3.chr2L	19,612,746 – 19,612,840	- - - intron="intron;ID=intron_FBgn0000464:5_FBgn0000464:6;Name=Lar-in;Parent=FBtr0305950;parent_type=mRNA" - - - -	3452	19,612,746 – 19,612,840	+	11	102	82.38	-1.80	0.76	0.949311
2508	dm3.chr2L	19,625,521 – 19,625,614	- - - intron="intron;ID=intron_FBgn0000464:5_FBgn0000464:6;Name=Lar-in;Parent=FBtr0305950;parent_type=mRNA" - - - -	3454	19,625,521 – 19,625,614	+	3	108	76.64	-2.54	0.58	0.931184
2509	dm3.chr2L	19,631,464 – 19,631,558	- - - intron="intron;ID=intron_FBgn0000464:5_FBgn0000464:6;Name=Lar-in;Parent=FBtr0305950;parent_type=mRNA" - - - -	3455	19,631,464 – 19,631,558	-	11	97	92.56	-1.91	0.92	0.945922
2512	dm3.chr2L	19,648,265 – 19,648,330	- - - intron="intron;ID=intron_FBgn0000464:8_FBgn0000464:9;Name=Lar-in;Parent=FBtr0081260,FBtr0112800,FBtr0305949,FBtr0305950,FBtr0305951;parent_type=mRNA" - - - -	3458	19,648,265 – 19,648,330	+	3	65	93.85	-1.58	0.99	0.935239
2513	dm3.chr2L	19,650,110 – 19,650,203	- - - intron="intron;ID=intron_FBgn0000464:8_FBgn0000464:9;Name=Lar-in;Parent=FBtr0081260,FBtr0112800,FBtr0305949,FBtr0305950,FBtr0305951;parent_type=mRNA" - - - -	3459	19,650,110 – 19,650,203	-	5	109	67.77	-1.64	0.57	0.956440
2519	dm3.chr2L	19,692,992 – 19,693,088	- - - intron="intron;ID=intron_FBgn0000464:9_FBgn0000464:10;Name=Lar-in;Parent=FBtr0081260,FBtr0112800,FBtr0305949,FBtr0305950,FBtr0305951;parent_type=mRNA" - - - -	3466	19,692,992 – 19,693,088	-	3	97	68.62	-1.62	0.75	0.965083
2524	dm3.chr2L	19,761,351 – 19,761,473	- - - - - "Noncode_2.0=n5380_u4721_X04243_snRNA_Drosophila\|6.6e-09" "unique_Noncode_2.0=u4721_snRNA_Drosophila\|5.7e-09" -	3472	19,761,351 – 19,761,473	+	12	146	87.39	-2.49	0.66	0.943594
2529	dm3.chr2L	19,796,211 – 19,796,280	- - - - - - - -	3479	19,796,211 – 19,796,280	-	6	69	80.41	-2.66	0.78	0.996123
2531	dm3.chr2L	19,810,730 – 19,810,905	FBnoncoding="snRNA;ID=FBtr0081292;Name=snRNA:U4:38AB-RA;Parent=FBgn0003931;Dbxref=FlyBase_Annotation_IDs:CR32879-RA,REFSEQ:NR_001670;score_text=Weakly" - - - "Rfam_10.0=RF00015;U4;AAPU01010717.1/67148-67287\|5.5e-72" "Noncode_2.0=n4282_u361_D00042_snRNA_Drosophila\|1.4e-75" "unique_Noncode_2.0=u361_snRNA_Drosophila\|1.3e-75" -	3481	19,810,730 – 19,810,905	+	13	194	86.37	-1.81	0.85	0.947258
2533	dm3.chr2L	19,812,668 – 19,812,787	FBnoncoding="snRNA;ID=FBtr0081293;Name=snRNA:U2:38ABb-RA;Parent=FBgn0003923;Dbxref=FlyBase_Annotation_IDs:CR32878-RA,REFSEQ:NR_001672;score_text=Weakly" - - - "Rfam_10.0=RF00004;U2;AANI01017247.1/37186-37381\|2.7e-48" "Noncode_2.0=n385_u363_AE003664_snRNA_Drosophila\|5.0e-62" "unique_Noncode_2.0=u363_snRNA_Drosophila\|4.3e-62" -	3484	19,812,668 – 19,812,787	-	13	120	89.95	-4.25	0.87	0.999221
2534	dm3.chr2L	19,815,601 – 19,815,768	FBnoncoding="snRNA;ID=FBtr0081313;Name=snRNA:U2:38ABa-RA;Parent=FBgn0003922;Dbxref=FlyBase_Annotation_IDs:CR32882-RA,REFSEQ:NR_001673;score_text=Weakly" - - - "Rfam_10.0=RF00004;U2;AAEU02000279.1/1183-1369\|1.4e-75" "Noncode_2.0=n5383_u364_X04246_snRNA_Drosophila\|6.1e-84" "unique_Noncode_2.0=u364_snRNA_Drosophila\|5.3e-84" -	3485	19,815,601 – 19,815,768	+	13	173	90.17	-4.18	0.83	0.999122
2534	dm3.chr2L	19,815,601 – 19,815,768		3486	19,815,601 – 19,815,768	-	13	173	90.17	-2.78	0.85	0.992569
2535	dm3.chr2L	19,816,410 – 19,816,544	FBnoncoding="snRNA;ID=FBtr0081294;Name=snRNA:U5:38ABb-RA;Parent=FBgn0043021;Dbxref=FlyBase_Annotation_IDs:CR32880-RA,REFSEQ:NR_001674;score_text=Weakly" - - - "Rfam_10.0=RF00020;U5;AABU01002759.1/1580853-1580981\|6.2e-68" "Noncode_2.0=n387_u365_AE003664_snRNA_Drosophila\|9.6e-67" "unique_Noncode_2.0=u365_snRNA_Drosophila\|8.4e-67" -	3488	19,816,447 – 19,816,544	+	13	113	74.56	-2.18	0.46	0.967604
2538	dm3.chr2L	19,844,332 – 19,844,395	- - - - - - - -	3493	19,844,332 – 19,844,395	+	7	79	73.01	-2.21	0.57	0.983887
2541	dm3.chr2L	19,854,981 – 19,855,081	- - - - - - - -	3497	19,854,981 – 19,855,081	-	5	101	77.00	-2.83	0.65	0.991508
2547	dm3.chr2L	19,931,848 – 19,931,948	- - - intron="intron;ID=intron_FBgn0260966:14_FBgn0260966:17;Name=sick-in;Parent=FBtr0301718;parent_type=mRNA" - - - -	3503	19,931,848 – 19,931,948	-	6	102	95.11	-2.21	0.93	0.963951
2550	dm3.chr2L	19,957,542 – 19,957,632	- - - - - - - -	3507	19,957,542 – 19,957,632	-	12	109	70.64	-1.76	0.57	0.991617
2551	dm3.chr2L	19,957,684 – 19,957,776	- - - - - - - -	3508	19,957,684 – 19,957,776	+	11	107	66.59	-0.44	0.87	0.949176
2554	dm3.chr2L	19,985,059 – 19,985,189	- - - intron="intron;ID=intron_FBgn0032838:7_FBgn0032838:6;Name=CG13966-in;Parent=FBtr0302173;parent_type=mRNA" - - - -	3512	19,985,059 – 19,985,189	-	5	130	86.70	-2.49	0.74	0.953955
2557	dm3.chr2L	19,996,147 – 19,996,286	- - - intron="intron;ID=intron_FBgn0032838:7_FBgn0032838:6;Name=CG13966-in;Parent=FBtr0302173;parent_type=mRNA" - - - -	3515	19,996,147 – 19,996,264	+	6	117	75.25	-2.13	0.58	0.977442
2560	dm3.chr2L	20,020,573 – 20,020,666	- - - - - - - -	3520	20,020,573 – 20,020,666	-	5	93	79.17	-1.62	0.79	0.934758
2562	dm3.chr2L	20,035,195 – 20,035,322	- - - intron="intron;ID=intron_CG13968:1_CG13968:5;Name=sNPF-in;Parent=FBtr0081327;parent_type=mRNA" - - - -	3522	20,035,195 – 20,035,293	+	6	102	69.62	-1.56	0.66	0.990401
2562	dm3.chr2L	20,035,195 – 20,035,322		3523	20,035,223 – 20,035,322	+	5	99	87.58	-1.83	0.87	0.923445
2564	dm3.chr2L	20,067,910 – 20,068,012	- - - intron="intron;ID=intron_CG13969:1_CG13969:2;Name=bwa-in;Parent=FBtr0081331;parent_type=mRNA" - - - -	3526	20,067,910 – 20,068,012	+	5	108	90.61	-2.84	0.72	0.943320
2564	dm3.chr2L	20,067,910 – 20,068,012		3527	20,067,910 – 20,068,012	-	5	108	90.61	-2.93	0.75	0.969839
2565	dm3.chr2L	20,075,041 – 20,075,174	- - - - - - - -	3528	20,075,041 – 20,075,174	-	11	153	55.73	-1.24	0.42	0.986850
2566	dm3.chr2L	20,078,116 – 20,078,208	- - - intron="intron;ID=intron_FBgn0004374:1_FBgn0004374:2;Name=neb-in;Parent=FBtr0081332;parent_type=mRNA" - - - -	3529	20,078,116 – 20,078,208	-	6	97	81.58	-1.93	0.68	0.903970
2567	dm3.chr2L	20,129,492 – 20,129,572	- - - - - - - -	3530	20,129,492 – 20,129,572	+	5	80	87.44	-2.13	0.87	0.958244
2570	dm3.chr2L	20,176,927 – 20,176,986	- - - - - - - -	3533	20,176,927 – 20,176,986	-	4	60	57.18	-1.58	0.60	0.997658
2571	dm3.chr2L	20,183,843 – 20,183,902	- - - - - - - -	3534	20,183,843 – 20,183,902	-	4	60	57.18	-1.58	0.60	0.997658
2573	dm3.chr2L	20,200,379 – 20,200,471	- - - - - - - -	3536	20,200,379 – 20,200,471	-	4	94	48.38	-1.37	0.43	0.989090
2580	dm3.chr2L	20,260,363 – 20,260,466	- - - - - - - -	3543	20,260,363 – 20,260,466	+	12	116	80.49	-2.96	0.39	0.913728
2589	dm3.chr2L	20,354,629 – 20,354,783	- - - intron="intron;ID=intron_FBgn0015803:4_FBgn0015803:5;Name=rtGEF-in;Parent=FBtr0081357;parent_type=mRNA" - - - -	3555	20,354,629 – 20,354,743	-	4	118	82.40	-2.07	0.78	0.939958
2591	dm3.chr2L	20,364,976 – 20,365,081	- - - - - - - -	3559	20,364,976 – 20,365,081	-	5	105	78.90	-1.86	0.89	0.982268
2593	dm3.chr2L	20,388,698 – 20,388,854	- - - intron="intron;ID=intron_FBgn0032857:2_FBgn0032857:1;Name=CG10947-in;Parent=FBtr0081369;parent_type=mRNA" - - - -	3563	20,388,738 – 20,388,854	-	6	116	69.45	-1.72	0.52	0.979999
2594	dm3.chr2L	20,396,035 – 20,396,133	- - - intron="intron;ID=intron_FBgn0032857:2_FBgn0032857:1;Name=CG10947-in;Parent=FBtr0081369;parent_type=mRNA" - - - -	3564	20,396,035 – 20,396,133	+	5	118	55.60	-1.33	0.48	0.969530
2595	dm3.chr2L	20,418,997 – 20,419,074	FBnoncoding="snoRNA;ID=FBtr0113543;Name=snoRNA:Psi18S-640b-RA;Parent=FBgn0083025;Dbxref=FlyBase_Annotation_IDs:CR34574-RA,REFSEQ:NR_003768;score_text=Weakly" - - intron="intron;ID=intron_CG10954:1_CG10954:2;Name=Arc-p34-in;Parent=FBtr0081358;parent_type=mRNA" - - - -	3565	20,418,997 – 20,419,074	+	10	93	62.39	-1.99	0.71	0.999506
2596	dm3.chr2L	20,419,148 – 20,419,284	FBnoncoding="snoRNA;ID=FBtr0113544;Name=snoRNA:Psi18S-525d-RA;Parent=FBgn0083035;Dbxref=FlyBase_Annotation_IDs:CR34575-RA,REFSEQ:NR_003769;score_text=Weakly" - - intron="intron;ID=intron_CG10954:1_CG10954:2;Name=Arc-p34-in;Parent=FBtr0081358;parent_type=mRNA" - - - -	3566	20,419,148 – 20,419,284	+	12	140	73.80	-1.36	0.73	0.986803
2597	dm3.chr2L	20,419,457 – 20,419,613	FBnoncoding="snoRNA;ID=FBtr0113546;Name=snoRNA:Psi18S-525e-RA;Parent=FBgn0083034;Dbxref=FlyBase_Annotation_IDs:CR34577-RA,REFSEQ:NR_003771;score_text=Weakly" - - intron="intron;ID=intron_CG10954:1_CG10954:2;Name=Arc-p34-in;Parent=FBtr0081358;parent_type=mRNA" - - - -	3567	20,419,457 – 20,419,613	+	12	163	69.28	-1.26	0.54	0.973744
2599	dm3.chr2L	20,421,605 – 20,421,688	FBnoncoding="snoRNA;ID=FBtr0113553;Name=snoRNA:Psi18S-525i-RA;Parent=FBgn0083030;Dbxref=FlyBase_Annotation_IDs:CR34584-RA,REFSEQ:NR_003778;score_text=Weakly" - - intron="intron;ID=intron_CG10954:5_CG10954:6;Name=Arc-p34-in;Parent=FBtr0081358;parent_type=mRNA" - - - -	3569	20,421,605 – 20,421,688	+	12	85	61.38	-2.26	0.56	0.999883
2600	dm3.chr2L	20,421,779 – 20,421,845	FBnoncoding="snoRNA;ID=FBtr0113554;Name=snoRNA:Psi18S-640g-RA;Parent=FBgn0083020;Dbxref=FlyBase_Annotation_IDs:CR34585-RA,REFSEQ:NR_003779;score_text=Weakly" - - intron="intron;ID=intron_CG10954:5_CG10954:6;Name=Arc-p34-in;Parent=FBtr0081358;parent_type=mRNA" - - - -	3570	20,421,779 – 20,421,845	+	10	71	66.99	-3.32	0.27	0.997251
2602	dm3.chr2L	20,443,007 – 20,443,137	- - CDS="CDS;ID=CDS_FBgn0051688:7_769;Name=CG31688-cds;Parent=FBtr0273379;parent_type=mRNA" - - - - -	3572	20,443,007 – 20,443,097	+	12	108	80.97	-3.09	0.53	0.993049
				3574	20,443,041 – 20,443,137	+	11	111	70.58	-1.87	0.44	0.936751
				3575	20,443,041 – 20,443,137	-	11	111	70.58	-1.75	0.44	0.904122
2605	dm3.chr2L	20,478,781 – 20,478,871	- - - - - - - -	3578	20,478,781 – 20,478,871	+	7	93	79.31	-3.03	0.57	0.995469
2607	dm3.chr2L	20,486,197 – 20,486,311	- - - - - - - -	3581	20,486,197 – 20,486,311	-	5	114	86.92	-2.08	0.78	0.900365
2609	dm3.chr2L	20,487,432 – 20,487,536	FBnoncoding="pre_miRNA;ID=FBtr0304487;Name=mir-1-RM;Parent=FBgn0262455;Alias=CR43027-RM;Dbxref=FlyBase_Annotation_IDs:CR43027-RM,miRBase:MI0000116" - - - "Rfam_10.0=RF00103;mir-1;AAPT01020974.1/21428-21504\|4.2e-25" "Noncode_2.0=n178696_u177794_NW_045819_miRNA_Anopheles\|3.5e-10" "unique_Noncode_2.0=u177794_miRNA_Anopheles\|3.1e-10" "mirBase_v16=dme-mir-1\|4.2e-47"	3584	20,487,432 – 20,487,536	+	13	114	80.76	-5.08	0.82	0.999573
2609	dm3.chr2L	20,487,432 – 20,487,536		3585	20,487,432 – 20,487,536	-	13	114	80.76	-2.14	0.71	0.983537
2612	dm3.chr2L	20,502,796 – 20,502,928	- - - - - - - -	3588	20,502,796 – 20,502,888	+	6	104	74.92	-2.08	0.68	0.988994
2615	dm3.chr2L	20,507,412 – 20,507,514	- - - - - - - -	3592	20,507,412 – 20,507,514	-	7	102	65.98	-1.00	0.53	0.932507
2621	dm3.chr2L	20,536,660 – 20,536,784	- - - - - - - -	3598	20,536,660 – 20,536,761	-	12	120	90.30	-2.09	0.87	0.949384
2622	dm3.chr2L	20,541,135 – 20,541,227	- - - - - - - -	3602	20,541,135 – 20,541,227	-	11	118	83.01	-2.12	0.67	0.912634
2623	dm3.chr2L	20,544,104 – 20,544,220	- - - - - - - -	3604	20,544,105 – 20,544,220	-	12	119	84.54	-2.10	0.68	0.936695
2628	dm3.chr2L	20,606,241 – 20,606,332	- - - - - - - -	3609	20,606,241 – 20,606,331	-	6	113	54.88	-0.60	0.78	0.988510
2635	dm3.chr2L	20,625,800 – 20,625,896	- - - - - - - -	3618	20,625,800 – 20,625,896	-	4	97	69.82	-2.03	0.51	0.944871
2640	dm3.chr2L	20,645,822 – 20,645,901	- - - - - - - -	3623	20,645,822 – 20,645,901	+	8	95	68.82	-1.55	0.72	0.986335
2640	dm3.chr2L	20,645,822 – 20,645,901	- - - - - - - -	3624	20,645,822 – 20,645,901	-	8	95	68.82	-2.87	0.51	0.998384
2641	dm3.chr2L	20,665,068 – 20,665,168	- - - - - - - -	3625	20,665,068 – 20,665,168	-	8	110	61.50	-1.88	0.33	0.960957
2647	dm3.chr2L	20,706,943 – 20,707,043	- - - intron="intron;ID=intron_FBgn0014859:6_FBgn0014859:5;Name=Hr38-in;Parent=FBtr0081397;parent_type=mRNA" - - - -	3631	20,706,943 – 20,707,043	-	5	112	67.33	-2.20	0.38	0.925594
2651	dm3.chr2L	20,714,518 – 20,714,608	- - - - - - - -	3635	20,714,518 – 20,714,608	-	10	108	65.90	-1.20	0.54	0.966523
2652	dm3.chr2L	20,719,297 – 20,719,404	- - - - - - - -	3637	20,719,307 – 20,719,404	-	5	97	71.91	-1.47	0.72	0.946384
2654	dm3.chr2L	20,735,633 – 20,735,726	- - - intron="intron;ID=intron_FBgn0000986:4_FBgn0000986:5;Name=Fs(2)Ket-in;Parent=FBtr0305586,FBtr0081392,FBtr0305584,FBtr0305585,FBtr0305587;parent_type=mRNA" - - - -	3639	20,735,633 – 20,735,726	-	5	93	94.41	-2.62	0.88	0.974015
2657	dm3.chr2L	20,799,001 – 20,799,053	- - - intron="intron;ID=intron_FBgn0032886:1_FBgn0032886:3;Name=CG9328-in;Parent=FBtr0081415;parent_type=mRNA" - - - -	3642	20,799,001 – 20,799,053	+	3	54	88.89	-1.22	1.00	0.902331
2657	dm3.chr2L	20,799,001 – 20,799,053		3643	20,799,001 – 20,799,053	-	3	54	88.89	-2.92	1.00	0.997604
2658	dm3.chr2L	20,802,440 – 20,802,495	- - - intron="intron;ID=intron_FBgn0032886:1_FBgn0032886:3;Name=CG9328-in;Parent=FBtr0081415;parent_type=mRNA" - - - -	3644	20,802,440 – 20,802,495	-	3	55	92.73	-1.52	1.01	0.950534
2661	dm3.chr2L	20,809,852 – 20,809,944	- - - intron="intron;ID=intron_FBgn0032886:1_FBgn0032886:3;Name=CG9328-in;Parent=FBtr0081415;parent_type=mRNA" - - - -	3647	20,809,852 – 20,809,944	+	8	109	86.84	-1.78	0.95	0.968289
2661	dm3.chr2L	20,809,852 – 20,809,944		3648	20,809,852 – 20,809,944	-	8	109	86.84	-1.91	0.89	0.952889
2665	dm3.chr2L	20,915,047 – 20,915,157	- - - intron="intron;ID=intron_FBgn0032901:16_FBgn0032901:14;Name=CG9339-in;Parent=FBtr0081442,FBtr0081443;parent_type=mRNA" - - - -	3653	20,915,047 – 20,915,154	-	4	108	89.66	-3.14	0.66	0.956377
2666	dm3.chr2L	20,915,636 – 20,915,766	- - - intron="intron;ID=intron_FBgn0032901:16_FBgn0032901:14;Name=CG9339-in;Parent=FBtr0081442,FBtr0081443;parent_type=mRNA" - - - -	3656	20,915,675 – 20,915,766	+	4	91	91.39	-1.97	0.88	0.904059
2670	dm3.chr2L	20,942,869 – 20,942,963	- - - - - - - -	3662	20,942,869 – 20,942,963	-	3	94	82.80	-2.11	0.77	0.901578
2673	dm3.chr2L	20,951,574 – 20,951,680	- - - - - - - -	3665	20,951,574 – 20,951,680	+	6	116	82.90	-1.59	0.85	0.912273
2678	dm3.chr2L	21,005,059 – 21,005,117	- - - - - - - -	3672	21,005,059 – 21,005,117	+	3	58	90.64	-1.39	0.99	0.915641
2679	dm3.chr2L	21,016,465 – 21,016,563	- - - - - - - -	3673	21,016,465 – 21,016,563	+	6	98	86.46	-2.67	0.68	0.961242
2682	dm3.chr2L	21,034,301 – 21,034,351	- - - - - - - -	3677	21,034,301 – 21,034,351	-	8	53	68.68	-1.90	0.53	0.992132
2691	dm3.chr2L	21,113,801 – 21,113,904	- - - intron="intron;ID=intron_FBgn0040297:2_FBgn0040297:3;Name=Nhe2-in;Parent=FBtr0081467,FBtr0306015,FBtr0306016,FBtr0299908,FBtr0299909,FBtr0299911,FBtr0299912;parent_type=mRNA" - - - -	3687	21,113,801 – 21,113,904	+	12	117	66.94	-1.45	0.41	0.927035
2696	dm3.chr2L	21,187,980 – 21,188,124	- - - intron="intron;ID=intron_CG14396:3_CG14396:4;Name=Ret-in;Parent=FBtr0081493,FBtr0081494,FBtr0081495,FBtr0081496,FBtr0081492;parent_type=mRNA" - - - -	3695	21,188,006 – 21,188,124	+	6	118	73.24	-1.52	0.61	0.936789
2697	dm3.chr2L	21,215,018 – 21,215,195	FBnoncoding="snRNA;ID=FBtr0081489;Name=snRNA:U4:39B-RA;Parent=FBgn0003930;Dbxref=FlyBase_Annotation_IDs:CR31625-RA,REFSEQ:NR_001679;score_text=Weakly" - - intron="intron;ID=intron_FBgn0032935:4_FBgn0032935:3;Name=CG8678-in;Parent=FBtr0081487;parent_type=mRNA" "Rfam_10.0=RF00015;U4;AAPU01010717.1/67148-67287\|1.2e-57" "Noncode_2.0=n389_u367_AE003669_snRNA_Drosophila\|3.7e-76" "unique_Noncode_2.0=u367_snRNA_Drosophila\|3.2e-76" -	3696	21,215,018 – 21,215,195	-	13	195	83.22	-2.04	0.64	0.915345
2702	dm3.chr2L	21,274,308 – 21,274,465	- - CDS="CDS;ID=CDS_FBgn0032938:6_780;Name=CG8671-cds;Parent=FBtr0081483;parent_type=mRNA" - - - - -	3704	21,274,346 – 21,274,465	-	8	120	69.07	-1.26	0.71	0.991656
2705	dm3.chr2L	21,310,946 – 21,311,045	- - - - - - - -	3707	21,310,946 – 21,311,045	+	12	114	73.15	-1.22	0.63	0.931717
2706	dm3.chr2L	21,327,506 – 21,327,601	- - - - - - - -	3709	21,327,506 – 21,327,601	-	7	97	71.57	-1.87	0.43	0.938239
2708	dm3.chr2L	21,394,171 – 21,394,227	- - - - - - - -	3713	21,394,171 – 21,394,227	-	3	56	92.86	-1.30	1.02	0.929123
2709	dm3.chr2L	21,406,814 – 21,406,875	- - - - - - - -	3714	21,406,814 – 21,406,875	+	5	62	62.07	-0.56	0.65	0.925031
2710	dm3.chr2L	21,423,135 – 21,423,190	- - - - - - - -	3716	21,423,135 – 21,423,190	+	11	66	58.05	-2.01	0.64	0.999859
2710	dm3.chr2L	21,423,135 – 21,423,190	- - - - - - - -	3717	21,423,135 – 21,423,190	-	11	66	58.05	-1.50	0.71	0.999519
2711	dm3.chr2L	21,439,210 – 21,439,270	- - - - - - - -	3718	21,439,210 – 21,439,270	+	8	67	68.50	-1.73	0.86	0.997273
2711	dm3.chr2L	21,439,210 – 21,439,270	- - - - - - - -	3719	21,439,210 – 21,439,270	-	8	67	68.50	-2.12	0.83	0.998915
2714	dm3.chr2L	21,477,255 – 21,477,366	- - - - - - - -	3723	21,477,255 – 21,477,366	+	13	122	55.29	-2.49	0.25	0.996640
2714	dm3.chr2L	21,477,255 – 21,477,366	- - - - - - - -	3724	21,477,255 – 21,477,366	-	13	122	55.29	-1.90	0.30	0.989602
2715	dm3.chr2L	21,482,265 – 21,482,320	- - - - - - - -	3725	21,482,265 – 21,482,320	+	9	56	72.90	-2.96	0.54	0.999415
2715	dm3.chr2L	21,482,265 – 21,482,320	- - - - - - - -	3726	21,482,265 – 21,482,320	-	9	56	72.90	-2.70	0.32	0.957902
2716	dm3.chr2L	21,490,339 – 21,490,412	- - - - - - - -	3727	21,490,339 – 21,490,412	+	10	81	62.29	-2.37	0.78	0.999785
2716	dm3.chr2L	21,490,339 – 21,490,412	- - - - - - - -	3728	21,490,339 – 21,490,412	-	10	81	62.29	-2.75	0.77	0.999880
2717	dm3.chr2L	21,497,866 – 21,497,921	- - - - - - - -	3729	21,497,866 – 21,497,921	+	11	70	58.18	-2.09	0.63	0.999855
2717	dm3.chr2L	21,497,866 – 21,497,921	- - - - - - - -	3730	21,497,866 – 21,497,921	-	11	70	58.18	-1.64	0.70	0.999595
2718	dm3.chr2L	21,502,543 – 21,502,634	- - - - - - - -	3731	21,502,543 – 21,502,634	+	9	92	68.61	-2.38	0.45	0.997136
2719	dm3.chr2L	21,502,919 – 21,502,974	- - - - - - - -	3732	21,502,919 – 21,502,974	+	11	70	58.69	-2.24	0.63	0.999888
2719	dm3.chr2L	21,502,919 – 21,502,974	- - - - - - - -	3733	21,502,919 – 21,502,974	-	11	70	58.69	-1.74	0.71	0.999648
2720	dm3.chr2L	21,507,964 – 21,508,019	- - - - - - - -	3734	21,507,964 – 21,508,019	+	11	66	57.48	-2.26	0.62	0.999927
2720	dm3.chr2L	21,507,964 – 21,508,019	- - - - - - - -	3735	21,507,964 – 21,508,019	-	11	66	57.48	-1.80	0.70	0.999792
2721	dm3.chr2L	21,513,008 – 21,513,063	- - - - - - - -	3736	21,513,008 – 21,513,063	+	11	66	57.00	-2.15	0.62	0.999910
2721	dm3.chr2L	21,513,008 – 21,513,063	- - - - - - - -	3737	21,513,008 – 21,513,063	-	11	66	57.00	-1.73	0.69	0.999768
2722	dm3.chr2L	21,522,584 – 21,522,674	- - - - - - - -	3738	21,522,584 – 21,522,674	+	12	110	56.59	-2.78	0.30	0.998537
2722	dm3.chr2L	21,522,584 – 21,522,674	- - - - - - - -	3739	21,522,584 – 21,522,674	-	12	110	56.59	-2.86	0.29	0.998597
2723	dm3.chr2L	21,527,405 – 21,527,510	- - - - - - - -	3740	21,527,405 – 21,527,510	+	11	117	63.10	-2.15	0.27	0.934282
2723	dm3.chr2L	21,527,405 – 21,527,510	- - - - - - - -	3741	21,527,405 – 21,527,510	-	11	117	63.10	-2.24	0.31	0.981098
2724	dm3.chr2L	21,553,821 – 21,553,877	- - - - - - - -	3742	21,553,821 – 21,553,877	+	3	56	51.79	-1.55	0.77	0.997992
2724	dm3.chr2L	21,553,821 – 21,553,877	- - - - - - - -	3743	21,553,821 – 21,553,877	-	3	56	51.79	-1.81	0.71	0.998997
2725	dm3.chr2L	21,556,897 – 21,557,048	- - - - - - - -	3744	21,556,897 – 21,556,988	-	5	92	57.61	-1.61	0.39	0.972864
2726	dm3.chr2L	21,611,585 – 21,611,689	- - - - - - - -	3746	21,611,585 – 21,611,689	-	3	124	61.36	-2.03	0.46	0.937950
2728	dm3.chr2L	21,663,067 – 21,663,158	- - - - - - - -	3749	21,663,067 – 21,663,158	-	8	105	73.97	-2.44	0.40	0.920983
2729	dm3.chr2L	21,680,617 – 21,680,756	FBnoncoding="ncRNA;ID=FBtr0091693;Name=snmRNA:254-RA;Parent=FBgn0065100;Dbxref=FlyBase_Annotation_IDs:CR33705-RA,REFSEQ:NR_002539;score_text=Weakly" - - intron="intron;ID=intron_CG2238:3_CG2238:4;Name=Ef2b-in;Parent=FBtr0085911,FBtr0085912,FBtr0085913;parent_type=mRNA" - "Noncode_2.0=n3547_u3174_AJ544045_snmRNA_Drosophila\|1.9e-09" "unique_Noncode_2.0=u3174_snmRNA_Drosophila\|1.7e-09" -	3751	21,680,617 – 21,680,756	-	12	163	61.65	-2.50	0.32	0.996443
2730	dm3.chr2L	21,681,338 – 21,681,567	- - CDS="CDS;ID=CDS_CG2238:2_735;Name=Ef2b-cds;Parent=FBtr0085911;parent_type=mRNA" - - - - -	3753	21,681,445 – 21,681,564	-	15	120	86.86	-2.51	0.72	0.975486
2730	dm3.chr2L	21,681,338 – 21,681,567		3755	21,681,449 – 21,681,567	-	15	120	85.89	-2.67	0.72	0.988758
2731	dm3.chr2L	21,685,236 – 21,685,324	- - - intron="intron;ID=intron_FBgn0051619:1_FBgn0051619:2;Name=CG31619-in;Parent=FBtr0110959,FBtr0085902,FBtr0085901,FBtr0301000;parent_type=mRNA" - - - -	3756	21,685,236 – 21,685,324	+	4	102	59.17	-1.46	0.47	0.960408
2732	dm3.chr2L	21,702,653 – 21,702,791	- - - intron="intron;ID=intron_FBgn0051619:5_FBgn0051619:6;Name=CG31619-in;Parent=FBtr0110959,FBtr0085902,FBtr0085901,FBtr0301000;parent_type=mRNA" - - - -	3758	21,702,653 – 21,702,791	-	4	142	78.61	-1.98	0.69	0.925142
2734	dm3.chr2L	21,727,901 – 21,727,966	- - - intron="intron;ID=intron_FBgn0051619:20_FBgn0051619:21;Name=CG31619-in;Parent=FBtr0110959,FBtr0085901,FBtr0301000;parent_type=mRNA" - - - -	3760	21,727,901 – 21,727,966	-	4	68	62.72	-2.42	0.31	0.930197
2735	dm3.chr2L	21,738,294 – 21,738,397	- - - - - - - -	3761	21,738,294 – 21,738,393	+	3	101	60.87	-3.40	0.56	0.999739
				3762	21,738,294 – 21,738,393	-	3	101	60.87	-3.31	0.57	0.999705
				3763	21,738,298 – 21,738,397	+	3	99	58.45	-3.29	0.58	0.999837
				3764	21,738,298 – 21,738,397	-	3	99	58.45	-3.07	0.59	0.999762
2740	dm3.chr2L	21,783,703 – 21,783,810	- - CDS="CDS;ID=CDS_CG11630:1_717;Name=CG11630-cds;Parent=FBtr0085909;parent_type=mRNA" intron="intron;ID=intron_FBgn0051612:4_FBgn0051612:3;Name=CG31612-in;Parent=FBtr0300999;parent_type=mRNA" - - - -	3769	21,783,703 – 21,783,804	+	8	103	60.88	-1.84	0.34	0.971032
2740	dm3.chr2L	21,783,703 – 21,783,810		3770	21,783,709 – 21,783,810	+	8	103	62.24	-1.83	0.34	0.959463
2741	dm3.chr2L	21,787,406 – 21,787,521	- - - intron="intron;ID=intron_FBgn0051612:4_FBgn0051612:3;Name=CG31612-in;Parent=FBtr0300999;parent_type=mRNA" - - - -	3771	21,787,406 – 21,787,521	+	6	115	83.83	-2.44	0.73	0.978231
2742	dm3.chr2L	21,801,727 – 21,801,821	- - - - - - - -	3772	21,801,727 – 21,801,821	+	9	96	78.81	-2.05	0.56	0.948743
2746	dm3.chr2L	21,823,020 – 21,823,131	- - - - - - - -	3777	21,823,020 – 21,823,131	-	12	120	93.00	-3.32	0.83	0.994230
2748	dm3.chr2L	21,838,966 – 21,839,082	- - - - - - - -	3779	21,838,966 – 21,839,056	-	12	111	65.09	-2.10	0.33	0.957139
2750	dm3.chr2L	21,876,188 – 21,876,282	- - - - - - - -	3782	21,876,188 – 21,876,282	+	11	115	71.17	-1.87	0.42	0.917702
2751	dm3.chr2L	21,894,280 – 21,894,332	- - - - - - - -	3783	21,894,280 – 21,894,332	-	6	52	92.56	-1.30	1.06	0.970528
2754	dm3.chr2L	21,926,993 – 21,927,088	- - - - - - - -	3787	21,926,993 – 21,927,088	+	12	115	70.50	-1.54	0.48	0.924078
2755	dm3.chr2L	21,937,926 – 21,938,030	- - - - - - - -	3788	21,937,926 – 21,938,030	+	12	120	71.29	-1.68	0.52	0.962039
2757	dm3.chr2L	21,953,256 – 21,953,346	- - - - - - - -	3791	21,953,256 – 21,953,346	-	7	99	75.88	-1.78	0.63	0.964805
2760	dm3.chr2L	21,962,520 – 21,962,611	- - - - - - - -	3794	21,962,520 – 21,962,611	-	9	99	70.81	-1.67	0.66	0.995113
2761	dm3.chr2L	21,973,402 – 21,973,530	- - - - - - - -	3795	21,973,402 – 21,973,530	-	11	139	73.15	-2.08	0.39	0.902186
2762	dm3.chr2L	21,976,401 – 21,976,504	- - - - - - - -	3796	21,976,401 – 21,976,501	+	11	110	84.12	-3.04	0.52	0.971943
2762	dm3.chr2L	21,976,401 – 21,976,504	- - - - - - - -	3797	21,976,401 – 21,976,501	-	11	110	84.12	-2.64	0.63	0.972541
2763	dm3.chr2L	21,990,350 – 21,990,415	- - - intron="intron;ID=intron_FBgn0032969:2_FBgn0032969:1;Name=CG2528-in;Parent=FBtr0300121;parent_type=mRNA" - - - -	3800	21,990,350 – 21,990,415	+	3	65	57.95	-0.97	0.77	0.973565
2763	dm3.chr2L	21,990,350 – 21,990,415		3801	21,990,350 – 21,990,415	-	3	65	57.95	-1.30	0.55	0.946643
2774	dm3.chr2L	22,078,989 – 22,079,095	- - - - - - - -	3814	22,078,989 – 22,079,095	-	3	108	53.27	-4.45	0.02	0.949036
2775	dm3.chr2L	22,093,174 – 22,093,231	- - - - - - - -	3815	22,093,174 – 22,093,231	+	3	62	82.42	-1.17	0.99	0.910622
2777	dm3.chr2L	22,148,870 – 22,148,927	- - - intron="intron;ID=intron_FBgn0261802:6_FBgn0261802:8;Name=CG42748-in;Parent=FBtr0303271,FBtr0303272,FBtr0303273,FBtr0303277;parent_type=mRNA" - - - -	3818	22,148,870 – 22,148,927	+	5	57	75.96	-2.12	0.53	0.918808
2778	dm3.chr2L	22,172,839 – 22,172,918	- - - - - - - -	3820	22,172,839 – 22,172,918	+	3	82	59.92	-2.13	0.52	0.986426
2779	dm3.chr2L	22,269,834 – 22,269,944	- - - - - - - -	3822	22,269,834 – 22,269,944	+	7	110	68.13	-1.77	0.54	0.990190
2779	dm3.chr2L	22,269,834 – 22,269,944	- - - - - - - -	3823	22,269,834 – 22,269,944	-	7	110	68.13	-2.30	0.64	0.999164
2781	dm3.chr2L	22,273,538 – 22,273,633	- - - - - - - -	3825	22,273,538 – 22,273,633	-	10	114	49.96	-1.35	0.34	0.961739
2782	dm3.chr2L	22,318,066 – 22,318,178	- - - intron="intron;ID=intron_FBgn0039972:2_FBgn0039972:3;Name=CG17018-in;Parent=FBtr0306235;parent_type=mRNA" - - - -	3826	22,318,066 – 22,318,178	+	3	112	82.74	-1.99	0.82	0.935832
2782	dm3.chr2L	22,318,066 – 22,318,178		3827	22,318,066 – 22,318,178	-	3	112	82.74	-2.36	0.79	0.968726
2783	dm3.chr2L	22,340,562 – 22,340,629	- - - intron="intron;ID=intron_FBgn0039972:3_FBgn0039972:7;Name=CG17018-in;Parent=FBtr0306235;parent_type=mRNA" - - - -	3828	22,340,562 – 22,340,629	-	4	67	48.97	-0.47	0.58	0.961391
2784	dm3.chr2L	22,359,123 – 22,359,274	- - - intron="intron;ID=intron_FBgn0039972:7_FBgn0039972:8;Name=CG17018-in;Parent=FBtr0306235;parent_type=mRNA" - - - -	3829	22,359,123 – 22,359,274	-	4	152	51.83	-1.81	0.33	0.953655
2785	dm3.chr2L	22,359,580 – 22,359,660	- - - intron="intron;ID=intron_FBgn0039972:7_FBgn0039972:8;Name=CG17018-in;Parent=FBtr0306235;parent_type=mRNA" - - - -	3830	22,359,580 – 22,359,660	+	4	80	56.33	-0.83	0.56	0.958109
2785	dm3.chr2L	22,359,580 – 22,359,660		3831	22,359,580 – 22,359,660	-	4	80	56.33	-2.87	0.63	0.999922
2787	dm3.chr2L	22,376,604 – 22,376,666	- - - - - - - -	3833	22,376,604 – 22,376,666	+	4	62	69.04	-2.38	0.73	0.997838
2788	dm3.chr2L	22,393,015 – 22,393,074	- - - - - - - -	3835	22,393,015 – 22,393,074	-	5	59	84.24	-3.17	0.85	0.997681
2791	dm3.chr2L	22,407,571 – 22,407,688	- - - - - - - -	3839	22,407,584 – 22,407,688	+	4	107	72.18	-1.72	0.66	0.942748
2792	dm3.chr2L	22,407,806 – 22,407,924	- - - - - - - -	3841	22,407,806 – 22,407,924	+	5	118	67.63	-1.45	0.55	0.955206
2792	dm3.chr2L	22,407,806 – 22,407,924	- - - - - - - -	3842	22,407,806 – 22,407,924	-	5	118	67.63	-2.45	0.57	0.998595
2793	dm3.chr2L	22,411,986 – 22,412,129	- - - - - - - -	3843	22,411,986 – 22,412,129	+	5	172	72.16	-1.82	0.60	0.974106
2793	dm3.chr2L	22,411,986 – 22,412,129	- - - - - - - -	3844	22,411,986 – 22,412,129	-	5	172	72.16	-3.72	0.56	0.999762
2794	dm3.chr2L	22,414,766 – 22,414,904	- - - - - - - -	3845	22,414,766 – 22,414,864	+	5	120	70.18	-2.72	0.59	0.998666
				3846	22,414,766 – 22,414,864	-	5	120	70.18	-3.07	0.63	0.999535
				3848	22,414,784 – 22,414,904	-	5	120	80.17	-3.08	0.70	0.997407
2796	dm3.chr2L	22,427,527 – 22,427,677	- - - - - - - -	3850	22,427,527 – 22,427,677	-	13	172	65.44	-2.44	0.27	0.961551
2797	dm3.chr2L	22,438,761 – 22,438,874	- - - - - - - -	3852	22,438,761 – 22,438,874	-	5	117	84.89	-3.03	0.80	0.995464
2798	dm3.chr2L	22,440,735 – 22,440,890	- - - - - - - -	3853	22,440,735 – 22,440,855	-	5	120	75.27	-2.17	0.53	0.934698
2798	dm3.chr2L	22,440,735 – 22,440,890	- - - - - - - -	3854	22,440,775 – 22,440,890	-	5	120	76.96	-2.82	0.58	0.991359
2799	dm3.chr2L	22,453,178 – 22,453,238	- - - - - - - -	3855	22,453,178 – 22,453,238	-	4	64	49.05	-1.05	0.49	0.982503
2800	dm3.chr2L	22,463,501 – 22,463,569	- - - - - - - -	3856	22,463,501 – 22,463,569	+	3	75	62.22	-2.21	0.75	0.997980
2801	dm3.chr2L	22,469,030 – 22,469,167	- - - - - - - -	3860	22,469,059 – 22,469,161	-	6	102	72.92	-1.60	0.58	0.953693
				3861	22,469,065 – 22,469,167	+	6	102	73.71	-1.89	0.61	0.982600
				3862	22,469,065 – 22,469,167	-	6	102	73.71	-2.62	0.69	0.998733
2802	dm3.chr2L	22,469,621 – 22,469,735	- - - - - - - -	3864	22,469,621 – 22,469,735	-	4	114	84.03	-2.59	0.88	0.992934
2803	dm3.chr2L	22,471,201 – 22,471,323	- - - - - - - -	3865	22,471,201 – 22,471,323	+	5	130	71.72	-3.14	0.40	0.992900
2803	dm3.chr2L	22,471,201 – 22,471,323	- - - - - - - -	3866	22,471,201 – 22,471,323	-	5	130	71.72	-3.85	0.33	0.996860
2808	dm3.chr2L	22,515,937 – 22,515,990	- - - intron="intron;ID=intron_CG40006:535457-534886_CG40006:514460-514174;Name=CG40006-in;Parent=FBtr0111230;parent_type=mRNA" - - - -	3873	22,515,937 – 22,515,990	+	4	59	66.09	-0.88	0.76	0.918299
2811	dm3.chr2L	22,528,542 – 22,528,699	- - - intron="intron;ID=intron_CG40006:535457-534886_CG40006:514460-514174;Name=CG40006-in;Parent=FBtr0111230;parent_type=mRNA" - - - -	3878	22,528,581 – 22,528,695	-	4	120	86.39	-2.88	0.73	0.980062
2811	dm3.chr2L	22,528,542 – 22,528,699		3880	22,528,584 – 22,528,699	-	4	120	88.06	-2.47	0.74	0.917268
2822	dm3.chr2L	22,984,631 – 22,984,751	- - - - - - - -	3892	22,984,631 – 22,984,751	+	4	120	60.24	-2.75	0.25	0.922049
2823	dm3.chr2L	22,985,063 – 22,985,183	- - - - - - - -	3893	22,985,063 – 22,985,161	-	3	112	60.30	-2.97	0.55	0.999442
2823	dm3.chr2L	22,985,063 – 22,985,183	- - - - - - - -	3894	22,985,074 – 22,985,183	-	3	112	55.56	-2.45	0.48	0.998277
2827	dm3.chr2RHet	65,906 – 66,014	FBnoncoding="ncRNA;ID=FBtr0114247;Name=CR41510-RB;Parent=FBgn0085793;Dbxref=FlyBase_Annotation_IDs:CR41510-RB,REFSEQ:NR_004353;score_text=Weakly" - - - - - - -	3898	65,906 – 66,013	+	5	107	66.86	-1.58	0.48	0.930741
2827	dm3.chr2RHet	65,906 – 66,014		3900	65,908 – 66,014	+	5	106	66.44	-1.61	0.49	0.950312
2828	dm3.chr2RHet	80,044 – 80,224	- - - - - - - -	3903	80,101 – 80,224	+	6	123	62.96	-1.77	0.55	0.998113
2828	dm3.chr2RHet	80,044 – 80,224	- - - - - - - -	3904	80,101 – 80,224	-	6	123	62.96	-1.82	0.55	0.998386
2829	dm3.chr2RHet	80,753 – 80,865	- - - - - - - -	3905	80,753 – 80,865	+	5	119	72.39	-2.57	0.58	0.995143
2830	dm3.chr2RHet	87,736 – 87,789	- - - - - - - -	3906	87,736 – 87,789	-	5	53	66.98	-1.85	0.60	0.994695
2833	dm3.chr2RHet	160,130 – 160,227	- - - - - - - -	3910	160,130 – 160,227	-	3	98	63.14	-2.37	0.43	0.964197
2834	dm3.chr2RHet	163,205 – 163,282	- - - - - - - -	3911	163,205 – 163,282	+	4	95	54.44	-1.39	0.45	0.950006
2836	dm3.chr2RHet	250,379 – 250,474	- - - - - - - -	3913	250,379 – 250,474	-	6	117	52.90	-1.57	0.41	0.990134
2838	dm3.chr2RHet	353,810 – 353,925	- - - - - - - -	3915	353,810 – 353,925	-	5	120	79.83	-3.49	0.63	0.998381
2840	dm3.chr2RHet	404,483 – 404,533	- - - - - - - -	3918	404,483 – 404,533	-	3	50	55.33	-1.50	0.92	0.993365
2841	dm3.chr2RHet	404,830 – 405,025	- - - - - - - -	3919	404,830 – 404,965	+	3	149	61.89	-2.97	0.40	0.990568
2841	dm3.chr2RHet	404,830 – 405,025	- - - - - - - -	3920	404,965 – 405,025	+	3	63	52.69	-2.42	0.43	0.996957
2842	dm3.chr2RHet	412,114 – 412,165	- - - - - - - -	3921	412,114 – 412,165	+	3	51	96.08	-1.82	0.95	0.909155
2848	dm3.chr2RHet	545,132 – 545,244	- - - intron="intron;ID=intron_CG41265:495100-495242_CG41265:564467-565026;Name=l(2)41Ab-in;Parent=FBtr0114030,FBtr0114029;parent_type=mRNA" - - - -	3929	545,132 – 545,244	-	4	128	55.05	-1.32	0.59	0.993970
2849	dm3.chr2RHet	558,213 – 558,314	- - - intron="intron;ID=intron_CG41265:495100-495242_CG41265:564467-565026;Name=l(2)41Ab-in;Parent=FBtr0114030,FBtr0114029;parent_type=mRNA" - - - -	3930	558,213 – 558,314	+	4	108	61.56	-1.49	0.46	0.940543
2851	dm3.chr2RHet	565,819 – 565,904	- - - intron="intron;ID=intron_CG41265:565646-565790_CG41265:569402-569610;Name=l(2)41Ab-in;Parent=FBtr0114030,FBtr0114029;parent_type=mRNA" - - - -	3932	565,819 – 565,904	-	3	86	65.37	-1.76	0.53	0.920314
2854	dm3.chr2RHet	627,499 – 627,613	- - - intron="intron;ID=intron_FBgn0040017:5_FBgn0040017:4;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3936	627,499 – 627,613	-	6	119	79.54	-2.46	0.79	0.994744
2855	dm3.chr2RHet	630,539 – 630,630	- - - intron="intron;ID=intron_FBgn0040017:5_FBgn0040017:4;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3937	630,539 – 630,630	+	4	91	51.35	-3.02	0.55	0.999955
2855	dm3.chr2RHet	630,539 – 630,630		3938	630,539 – 630,630	-	4	91	51.35	-1.44	0.45	0.986386
2856	dm3.chr2RHet	728,042 – 728,105	- - - intron="intron;ID=intron_FBgn0040017:7_FBgn0040017:6;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3939	728,042 – 728,105	-	4	64	69.55	-2.22	0.44	0.924488
2858	dm3.chr2RHet	756,903 – 756,954	- - - intron="intron;ID=intron_FBgn0040017:10_FBgn0040017:9;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3941	756,903 – 756,954	+	3	51	68.63	-1.67	0.73	0.966833
2861	dm3.chr2RHet	912,783 – 912,833	- - - intron="intron;ID=intron_FBgn0040017:13_FBgn0040017:12;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3946	912,783 – 912,833	-	3	53	53.85	-0.78	0.62	0.912577
2865	dm3.chr2RHet	1,077,178 – 1,077,316	- - - - - - - -	3950	1,077,178 – 1,077,295	-	5	120	77.75	-2.58	0.69	0.992933
2865	dm3.chr2RHet	1,077,178 – 1,077,316	- - - - - - - -	3951	1,077,217 – 1,077,316	-	5	120	67.97	-1.30	0.65	0.921535
2866	dm3.chr2RHet	1,077,320 – 1,077,466	- - - - - - - -	3952	1,077,320 – 1,077,466	-	5	164	70.69	-1.87	0.57	0.959211
2873	dm3.chr2RHet	1,134,331 – 1,134,440	- - - - - - - -	3959	1,134,331 – 1,134,440	+	3	112	67.86	-2.06	0.59	0.961126
2874	dm3.chr2RHet	1,139,417 – 1,139,512	- - - - - - - -	3960	1,139,417 – 1,139,512	-	8	97	50.81	-1.86	0.21	0.932800
2879	dm3.chr2RHet	1,311,889 – 1,311,940	- - - intron="intron;ID=intron_FBgn0058263:5_FBgn0058263:4;Name=CG40263-in;Parent=FBtr0301779,FBtr0301780,FBtr0301781;parent_type=mRNA" - - - -	3966	1,311,889 – 1,311,940	+	4	51	60.98	-2.16	0.35	0.947850
2881	dm3.chr2RHet	1,396,503 – 1,396,561	- - - - - - - -	3968	1,396,503 – 1,396,561	+	4	58	96.55	-2.89	0.81	0.944862
2881	dm3.chr2RHet	1,396,503 – 1,396,561	- - - - - - - -	3969	1,396,503 – 1,396,561	-	4	58	96.55	-3.10	0.87	0.985899
2882	dm3.chr2RHet	1,404,972 – 1,405,117	- - - - - - - -	3970	1,404,972 – 1,405,117	+	4	145	94.48	-3.23	0.82	0.986113
2884	dm3.chr2RHet	1,482,653 – 1,482,771	- - - - - - - -	3973	1,482,653 – 1,482,768	+	3	115	56.81	-1.80	0.49	0.976414
				3974	1,482,653 – 1,482,768	-	3	115	56.81	-1.49	0.47	0.905071
				3975	1,482,657 – 1,482,771	+	3	114	57.02	-1.70	0.51	0.974215
2885	dm3.chr2RHet	1,552,681 – 1,552,750	- - - intron="intron;ID=intron_FBgn0085638:2_FBgn0085638:1;Name=CG41378-in;Parent=FBtr0301790,FBtr0301791,FBtr0301792;parent_type=mRNA" - - - -	3977	1,552,681 – 1,552,750	+	3	80	56.17	-1.36	0.52	0.948156
2888	dm3.chr2RHet	1,649,658 – 1,649,740	- - - - - - - -	3980	1,649,658 – 1,649,740	+	4	90	80.52	-1.75	0.86	0.958619
2895	dm3.chr2RHet	1,703,836 – 1,703,951	- - - - - - - -	3988	1,703,836 – 1,703,951	-	3	120	50.14	-1.16	0.46	0.918136
2896	dm3.chr2RHet	1,717,727 – 1,717,803	- - - intron="intron;ID=intron_FBgn0020908:3_FBgn0020908:2;Name=Scp1-in;Parent=FBtr0113713;parent_type=mRNA" - - - -	3989	1,717,727 – 1,717,803	+	6	88	64.49	-2.66	0.25	0.934411
2897	dm3.chr2RHet	1,741,607 – 1,741,673	- - - intron="intron;ID=intron_FBgn0020908:5_FBgn0020908:4;Name=Scp1-in;Parent=FBtr0113713;parent_type=mRNA" - - - -	3990	1,741,607 – 1,741,673	+	4	66	84.09	-2.43	0.68	0.916162
2898	dm3.chr2RHet	1,745,902 – 1,745,992	- - - - - - - "mirBase_v16=dme-mir-2490\|3.5e-10"	3991	1,745,902 – 1,745,992	-	4	103	59.69	-3.49	0.49	0.999846
2899	dm3.chr2RHet	1,751,239 – 1,751,291	- - - - - - - -	3992	1,751,239 – 1,751,291	+	5	66	63.54	-1.64	0.55	0.972870
2904	dm3.chr2RHet	1,901,009 – 1,901,063	- - - intron="intron;ID=intron_FBgn0260995:4_FBgn0260995:5;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	3997	1,901,009 – 1,901,063	+	3	59	57.56	-1.25	0.55	0.916663
2905	dm3.chr2RHet	1,921,238 – 1,921,390	- - - intron="intron;ID=intron_FBgn0260995:5_FBgn0260995:6;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	3998	1,921,238 – 1,921,358	+	4	120	63.37	-2.45	0.40	0.991057
2905	dm3.chr2RHet	1,921,238 – 1,921,390		3999	1,921,278 – 1,921,390	+	4	119	51.86	-2.44	0.30	0.993691
2906	dm3.chr2RHet	1,930,021 – 1,930,166	- - - intron="intron;ID=intron_FBgn0260995:5_FBgn0260995:6;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	4000	1,930,021 – 1,930,166	+	6	177	62.01	-1.65	0.51	0.984849
2907	dm3.chr2RHet	1,935,671 – 1,935,735	- - - intron="intron;ID=intron_FBgn0260995:5_FBgn0260995:6;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	4001	1,935,671 – 1,935,735	-	4	65	56.04	-1.06	0.58	0.990094
2908	dm3.chr2RHet	1,940,365 – 1,940,419	- - - intron="intron;ID=intron_FBgn0260995:5_FBgn0260995:6;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	4002	1,940,365 – 1,940,419	+	4	57	68.17	-0.79	0.85	0.904042
2908	dm3.chr2RHet	1,940,365 – 1,940,419		4003	1,940,365 – 1,940,419	-	4	57	68.17	-1.20	0.72	0.943837
2912	dm3.chr2RHet	2,071,877 – 2,071,971	- - - - - - - -	4007	2,071,877 – 2,071,971	+	3	98	51.03	-1.58	0.56	0.995266
2913	dm3.chr2RHet	2,079,964 – 2,080,020	- - - - - - - -	4008	2,079,964 – 2,080,020	+	3	62	74.73	-3.36	0.92	0.998735
2913	dm3.chr2RHet	2,079,964 – 2,080,020	- - - - - - - -	4009	2,079,964 – 2,080,020	-	3	62	74.73	-2.07	0.92	0.989607
2914	dm3.chr2RHet	2,145,057 – 2,145,135	- - - - - - - -	4010	2,145,057 – 2,145,135	+	4	84	49.06	-0.99	0.50	0.978520
2915	dm3.chr2RHet	2,165,457 – 2,165,563	- - - - - - - -	4011	2,165,457 – 2,165,563	+	3	106	59.75	-2.72	0.43	0.994984
2915	dm3.chr2RHet	2,165,457 – 2,165,563	- - - - - - - -	4012	2,165,457 – 2,165,563	-	3	106	59.75	-2.52	0.51	0.997131
2918	dm3.chr2RHet	2,172,902 – 2,172,992	- - - - - - - -	4015	2,172,902 – 2,172,992	-	3	102	53.54	-2.10	0.33	0.906363
2919	dm3.chr2RHet	2,203,641 – 2,203,719	- - - - - - - -	4016	2,203,641 – 2,203,719	-	9	82	72.02	-2.18	0.58	0.997932
2920	dm3.chr2RHet	2,211,765 – 2,211,829	- - - - - - - -	4017	2,211,765 – 2,211,829	-	6	68	58.08	-0.94	0.53	0.975113
2921	dm3.chr2RHet	2,246,925 – 2,246,980	- - - - - - - -	4018	2,246,925 – 2,246,980	-	5	55	88.91	-2.35	0.76	0.913966
2922	dm3.chr2RHet	2,267,402 – 2,267,464	- - - - - - - -	4019	2,267,402 – 2,267,464	+	3	63	58.06	-2.18	0.41	0.965583
2924	dm3.chr2RHet	2,333,171 – 2,333,234	- - - - - - - -	4021	2,333,171 – 2,333,234	-	5	74	50.59	-1.48	0.39	0.980679
2925	dm3.chr2RHet	2,342,193 – 2,342,249	- - - - - - - -	4022	2,342,193 – 2,342,249	-	5	59	58.32	-1.52	0.58	0.997469
2928	dm3.chr2RHet	2,352,279 – 2,352,360	- - - - - - - -	4025	2,352,279 – 2,352,360	-	4	96	65.78	-1.65	0.51	0.901857
2932	dm3.chr2RHet	2,417,076 – 2,417,140	- - - - - - - -	4029	2,417,076 – 2,417,140	+	4	64	57.52	-1.68	0.43	0.972078
2933	dm3.chr2RHet	2,583,195 – 2,583,251	- - - - - - - -	4030	2,583,195 – 2,583,251	+	7	58	64.07	-1.03	0.65	0.989856
2933	dm3.chr2RHet	2,583,195 – 2,583,251	- - - - - - - -	4031	2,583,195 – 2,583,251	-	7	58	64.07	-0.87	0.66	0.983916
2934	dm3.chr2RHet	2,591,911 – 2,591,963	- - - - - - - -	4032	2,591,911 – 2,591,963	-	3	52	60.90	-2.21	0.52	0.992462
2936	dm3.chr2RHet	2,645,123 – 2,645,180	- - - - - - - -	4034	2,645,123 – 2,645,180	-	4	58	65.80	-1.44	0.78	0.989848
2937	dm3.chr2RHet	2,649,483 – 2,649,548	- - - - - - - -	4035	2,649,483 – 2,649,548	+	4	66	59.49	-1.61	0.43	0.957800
2939	dm3.chr2RHet	2,808,828 – 2,808,938	- - - intron="intron;ID=intron_FBgn0039959:7_FBgn0039959:8;Name=CG17514-in;Parent=FBtr0113748;parent_type=mRNA" - - - -	4037	2,808,828 – 2,808,938	+	4	110	73.16	-2.02	0.54	0.906407
2940	dm3.chr2RHet	2,810,582 – 2,810,689	- - - intron="intron;ID=intron_FBgn0039959:7_FBgn0039959:8;Name=CG17514-in;Parent=FBtr0113748;parent_type=mRNA" - - - -	4038	2,810,582 – 2,810,689	+	4	114	52.64	-1.92	0.32	0.965655
2941	dm3.chr2RHet	2,841,375 – 2,841,474	- - - - - - - -	4040	2,841,375 – 2,841,474	-	3	110	53.61	-1.66	0.41	0.907974
2946	dm3.chr2RHet	3,041,794 – 3,041,848	- - - - - - - -	4046	3,041,794 – 3,041,848	+	4	55	60.06	-1.89	0.43	0.986631
2946	dm3.chr2RHet	3,041,794 – 3,041,848	- - - - - - - -	4047	3,041,794 – 3,041,848	-	4	55	60.06	-2.82	0.65	0.999876
2948	dm3.chr2RHet	3,142,473 – 3,142,527	- - - intron="intron;ID=intron_FBgn0260994:2_FBgn0260994:1;Name=uex-in;Parent=FBtr0302226,FBtr0302227;parent_type=mRNA" - - - -	4049	3,142,473 – 3,142,527	-	4	54	66.05	-1.79	0.66	0.994269
2949	dm3.chr2RHet	3,145,343 – 3,145,406	- - - intron="intron;ID=intron_FBgn0260994:2_FBgn0260994:1;Name=uex-in;Parent=FBtr0302226,FBtr0302227;parent_type=mRNA" - - - -	4050	3,145,343 – 3,145,406	+	10	69	61.81	-1.38	0.49	0.993184
2950	dm3.chr2RHet	3,184,323 – 3,184,444	- - - - - - - -	4052	3,184,323 – 3,184,444	-	4	121	55.59	-1.20	0.50	0.974284
2951	dm3.chr2RHet	3,189,913 – 3,190,007	- - - - - - - -	4053	3,189,913 – 3,190,007	-	4	94	54.94	-1.20	0.51	0.984799
2954	dm3.chr2R	67,901 – 67,996	- - - - - - - -	4056	67,901 – 67,996	+	3	100	65.08	-1.65	0.60	0.929364
2955	dm3.chr2R	75,703 – 75,762	- - - - - - - -	4057	75,703 – 75,762	-	4	60	78.06	-3.03	0.77	0.997790
2957	dm3.chr2R	117,862 – 117,963	- - - - - - - -	4059	117,862 – 117,963	+	4	101	56.60	-1.55	0.37	0.929771
2963	dm3.chr2R	365,603 – 365,772	- - - - - - - -	4067	365,603 – 365,719	-	6	118	75.43	-2.13	0.66	0.990410
2965	dm3.chr2R	378,561 – 378,648	- - - - - - - -	4071	378,561 – 378,648	+	5	89	64.52	-1.81	0.38	0.920328
2967	dm3.chr2R	384,106 – 384,319	- - - - - - - -	4075	384,139 – 384,257	-	6	120	76.84	-2.07	0.70	0.989255
2967	dm3.chr2R	384,106 – 384,319	- - - - - - - -	4077	384,217 – 384,319	-	5	120	66.84	-1.73	0.52	0.962229
2969	dm3.chr2R	389,458 – 389,561	- - - - - - - -	4079	389,458 – 389,561	+	6	106	73.01	-1.46	0.70	0.967818
2971	dm3.chr2R	454,487 – 454,597	- - - - - - - -	4081	454,487 – 454,597	-	3	110	64.72	-1.95	0.55	0.953312
2973	dm3.chr2R	594,327 – 594,420	- - - intron="intron;ID=intron_FBgn0026401:13_FBgn0026401:12;Name=Nipped-B-in;Parent=FBtr0111119,FBtr0111118,FBtr0301454,FBtr0301455,FBtr0301456;parent_type=mRNA" - - - -	4083	594,327 – 594,420	+	3	98	50.87	-1.40	0.47	0.966211
2974	dm3.chr2R	622,109 – 622,159	- - - - - - - -	4084	622,109 – 622,159	+	5	51	52.98	-0.60	0.51	0.960123
2977	dm3.chr2R	642,814 – 642,867	- - - intron="intron;ID=intron_FBgn0039994:9_FBgn0039994:10;Name=CG17082-in;Parent=FBtr0111290,FBtr0111288,FBtr0111285,FBtr0111287,FBtr0111289,FBtr0302385;parent_type=mRNA" - - - -	4088	642,814 – 642,867	-	4	54	53.89	-1.27	0.42	0.937346
2980	dm3.chr2R	679,921 – 680,029	- - - - - - - -	4091	679,921 – 680,029	-	4	118	51.14	-2.58	0.22	0.972217
2983	dm3.chr2R	721,672 – 721,823	- - - - - - - -	4095	721,708 – 721,823	-	3	120	59.17	-1.81	0.42	0.918960
2984	dm3.chr2R	735,716 – 735,786	- - - - - - - -	4097	735,716 – 735,786	-	5	78	53.05	-0.87	0.45	0.920564
2986	dm3.chr2R	752,440 – 752,553	- - - - - - - -	4099	752,440 – 752,553	-	3	120	59.89	-2.48	0.39	0.976344
2988	dm3.chr2R	786,438 – 786,490	- - - - - - - -	4101	786,438 – 786,490	-	3	52	62.18	-2.77	0.56	0.998639
2997	dm3.chr2R	989,688 – 989,766	- - - - - - - -	4111	989,688 – 989,766	+	3	83	58.23	-1.59	0.53	0.965102
2997	dm3.chr2R	989,688 – 989,766	- - - - - - - -	4112	989,688 – 989,766	-	3	83	58.23	-1.34	0.71	0.986088
2998	dm3.chr2R	990,139 – 990,244	- - - - - - - -	4114	990,139 – 990,244	-	6	111	73.21	-2.37	0.73	0.997142
3003	dm3.chr2R	1,132,134 – 1,132,199	- - - intron="intron;ID=intron_FBgn0053554:24_FBgn0053554:23;Name=Nipped-A-in;Parent=FBtr0091528;parent_type=mRNA" - - - -	4120	1,132,134 – 1,132,199	+	4	67	66.50	-1.46	0.55	0.917533
3006	dm3.chr2R	1,232,416 – 1,232,481	- - - - - - - -	4124	1,232,416 – 1,232,481	-	4	69	50.75	-0.60	0.63	0.982938
3008	dm3.chr2R	1,254,369 – 1,254,516	FBnoncoding="ncRNA;ID=FBtr0302350;Name=CR42646-RA;Parent=FBgn0261429;Dbxref=FlyBase_Annotation_IDs:CR42646-RA;score_text=Strongly" - - - - - - -	4127	1,254,369 – 1,254,516	-	4	148	64.93	-2.29	0.38	0.916412
3011	dm3.chr2R	1,318,229 – 1,318,328	- - - intron="intron;ID=intron_FBgn0259247:3_FBgn0259247:4;Name=CG42345-in;Parent=FBtr0299918,FBtr0299920,FBtr0299921,FBtr0301063;parent_type=mRNA" - - - -	4130	1,318,229 – 1,318,323	+	4	94	59.03	-2.02	0.39	0.971472
				4131	1,318,229 – 1,318,323	-	4	94	59.03	-2.64	0.65	0.999764
				4132	1,318,234 – 1,318,328	+	4	94	57.47	-2.07	0.35	0.949362
				4133	1,318,234 – 1,318,328	-	4	94	57.47	-2.29	0.63	0.999488
3012	dm3.chr2R	1,343,197 – 1,343,307	- - - - - - - -	4134	1,343,197 – 1,343,307	-	3	110	57.19	-1.37	0.51	0.913272
3017	dm3.chr2R	1,472,846 – 1,472,898	- - - - - - - -	4139	1,472,846 – 1,472,898	+	3	52	57.05	-1.63	0.44	0.907339
3018	dm3.chr2R	1,483,315 – 1,483,607	- - - - - - - -	4140	1,483,315 – 1,483,382	-	3	67	62.63	-2.20	0.70	0.995450
3018	dm3.chr2R	1,483,315 – 1,483,607	- - - - - - - -	4141	1,483,382 – 1,483,501	-	3	120	54.08	-2.05	0.46	0.978001
3019	dm3.chr2R	1,545,012 – 1,545,111	- - CDS="CDS;ID=CDS_CG8426:9_509;Name=l(2)NC136-cds;Parent=FBtr0086062;parent_type=mRNA" - - - - -	4143	1,545,012 – 1,545,111	-	14	119	66.89	-1.31	0.65	0.996339
3021	dm3.chr2R	1,568,478 – 1,568,568	- - - intron="intron;ID=intron_CG11066:3_CG11066:4;Name=scaf-in;Parent=FBtr0086060,FBtr0086061;parent_type=mRNA" - - - -	4145	1,568,478 – 1,568,568	+	3	90	74.30	-2.21	0.64	0.909322
3021	dm3.chr2R	1,568,478 – 1,568,568		4146	1,568,478 – 1,568,568	-	3	90	74.30	-1.91	0.78	0.943654
3024	dm3.chr2R	1,595,247 – 1,595,349	- - - - - - - -	4149	1,595,247 – 1,595,349	+	6	102	70.47	-1.53	0.53	0.933629
3025	dm3.chr2R	1,597,640 – 1,597,767	- - - - - - - -	4151	1,597,640 – 1,597,731	-	11	102	89.93	-1.97	0.88	0.939260
3025	dm3.chr2R	1,597,640 – 1,597,767	- - - - - - - -	4152	1,597,655 – 1,597,767	-	12	118	95.67	-2.76	0.85	0.971557
3026	dm3.chr2R	1,605,161 – 1,605,279	- - CDS="CDS;ID=CDS_FBgn0000099:10_566;Name=ap-cds;Parent=FBtr0300504;parent_type=mRNA" - - - - -	4154	1,605,161 – 1,605,279	-	13	118	87.51	-1.77	0.81	0.923300
3030	dm3.chr2R	1,630,047 – 1,630,145	- - - - - - - -	4159	1,630,047 – 1,630,145	+	11	108	70.59	-1.19	0.54	0.932648
3032	dm3.chr2R	1,668,308 – 1,668,382	- - - intron="intron;ID=intron_CG11163:11_CG11163:12;Name=CG11163-in;Parent=FBtr0086054;parent_type=mRNA" - - - -	4161	1,668,308 – 1,668,382	-	3	74	93.69	-2.58	0.90	0.976583
3036	dm3.chr2R	1,715,883 – 1,715,942	- - - - - - - -	4165	1,715,883 – 1,715,942	-	5	60	69.02	-1.55	0.64	0.978623
3039	dm3.chr2R	1,720,726 – 1,720,821	- - - - - - - -	4169	1,720,726 – 1,720,821	+	7	120	79.85	-2.90	0.72	0.996154
3039	dm3.chr2R	1,720,726 – 1,720,821	- - - - - - - -	4170	1,720,726 – 1,720,821	-	7	120	79.85	-1.96	0.74	0.952347
3041	dm3.chr2R	1,727,958 – 1,728,110	- - - - - - - -	4173	1,727,990 – 1,728,110	+	3	120	86.78	-2.58	0.84	0.977075
3042	dm3.chr2R	1,737,498 – 1,737,575	- - - intron="intron;ID=intron_FBgn0085414:1_FBgn0085414:2;Name=dpr12-in;Parent=FBtr0300553;parent_type=mRNA" - - - -	4175	1,737,498 – 1,737,575	+	11	80	83.45	-2.03	0.70	0.946867
3043	dm3.chr2R	1,738,897 – 1,738,988	- - - intron="intron;ID=intron_FBgn0085414:1_FBgn0085414:2;Name=dpr12-in;Parent=FBtr0300553;parent_type=mRNA" - - - -	4177	1,738,897 – 1,738,988	-	5	91	95.82	-1.61	1.00	0.945142
3046	dm3.chr2R	1,772,661 – 1,772,721	- - - - - - - -	4180	1,772,661 – 1,772,721	+	3	61	57.69	-1.35	0.60	0.969281
3048	dm3.chr2R	1,780,031 – 1,780,081	- - - - - - - -	4183	1,780,031 – 1,780,081	-	4	50	97.00	-1.50	1.00	0.917882
3054	dm3.chr2R	1,867,285 – 1,867,435	- - - - - - - -	4189	1,867,285 – 1,867,396	-	8	120	69.59	-1.87	0.56	0.990529
3054	dm3.chr2R	1,867,285 – 1,867,435	- - - - - - - -	4190	1,867,321 – 1,867,435	-	8	118	72.88	-1.65	0.61	0.965379
3064	dm3.chr2R	1,956,990 – 1,957,097	- - - - - - - -	4201	1,956,990 – 1,957,097	-	5	109	91.70	-2.10	0.86	0.913338
3066	dm3.chr2R	2,004,773 – 2,004,880	- - - intron="intron;ID=intron_FBgn0000546:7_FBgn0000546:6;Name=EcR-in;Parent=FBtr0086011,FBtr0302439;parent_type=mRNA" - - - -	4203	2,004,773 – 2,004,880	-	3	120	77.43	-1.92	0.80	0.943180
3067	dm3.chr2R	2,012,514 – 2,012,565	- - - intron="intron;ID=intron_FBgn0000546:9_FBgn0000546:7;Name=EcR-in;Parent=FBtr0086011;parent_type=mRNA" - - - -	4204	2,012,514 – 2,012,565	-	6	53	85.16	-3.73	0.87	0.998967
3068	dm3.chr2R	2,013,432 – 2,013,489	- - - intron="intron;ID=intron_FBgn0000546:9_FBgn0000546:7;Name=EcR-in;Parent=FBtr0086011;parent_type=mRNA" - - - -	4206	2,013,432 – 2,013,489	-	5	57	79.47	-2.53	0.55	0.950076
3069	dm3.chr2R	2,023,361 – 2,023,431	- - - intron="intron;ID=intron_FBgn0000546:10_FBgn0000546:8;Name=EcR-in;Parent=FBtr0302439;parent_type=mRNA" - - - -	4207	2,023,361 – 2,023,431	-	4	70	61.67	-1.63	0.64	0.994477
3071	dm3.chr2R	2,037,600 – 2,037,733	- - - - - - - -	4210	2,037,625 – 2,037,733	-	11	116	67.51	-1.57	0.50	0.982555
3072	dm3.chr2R	2,040,089 – 2,040,202	FBnoncoding="tRNA;ID=FBtr0086016;Name=tRNA:N5:42Ah-RA;Parent=FBgn0011938;Dbxref=FlyBase_Annotation_IDs:CR30513-RA;score_text=Weakly" tRNAscann="Asn_chr2R_trna99" - intron="intron;ID=intron_FBgn0000546:14_FBgn0000546:12;Name=EcR-in;Parent=FBtr0086010;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB011110628.1/812-884\|1.2e-25" "Noncode_2.0=n125534_u124632_DQ592147_piRNA_human\|3.7e-07" "unique_Noncode_2.0=u124631_piRNA_human\|3.2e-07" -	4211	2,040,089 – 2,040,202	+	12	128	75.39	-1.99	0.82	0.996934
3072	dm3.chr2R	2,040,089 – 2,040,202		4212	2,040,089 – 2,040,202	-	12	128	75.39	-2.00	0.78	0.997099
3073	dm3.chr2R	2,040,972 – 2,041,084	FBnoncoding="tRNA;ID=FBtr0100016;Name=tRNA:N5:42Af-RA;Parent=FBgn0011936;Dbxref=FlyBase_Annotation_IDs:CR33973-RA;score_text=Weakly" tRNAscann="Asn_chr2R_trna98" - intron="intron;ID=intron_FBgn0000546:14_FBgn0000546:12;Name=EcR-in;Parent=FBtr0086010;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB011110628.1/812-884\|1.2e-25" "Noncode_2.0=n125534_u124632_DQ592147_piRNA_human\|3.7e-07" "unique_Noncode_2.0=u124631_piRNA_human\|3.2e-07" -	4213	2,040,972 – 2,041,084	+	10	117	79.10	-1.88	0.93	0.990397
3073	dm3.chr2R	2,040,972 – 2,041,084		4214	2,040,972 – 2,041,084	-	10	117	79.10	-1.91	0.96	0.991164
3075	dm3.chr2R	2,049,038 – 2,049,122	FBnoncoding="tRNA;ID=FBtr0085980;Name=tRNA:R2:42Ac-RA;Parent=FBgn0011957;Dbxref=FlyBase_Annotation_IDs:CR30512-RA;score_text=Weakly" tRNAscann="Arg_chr2R_trna3" - - "Rfam_10.0=RF00005;tRNA;AAPU01010262.1/58672-58744\|2.3e-32" "Noncode_2.0=n144358_u143456_DQ573323_piRNA_human\|6.6e-08" "unique_Noncode_2.0=u143456_piRNA_human\|5.7e-08" -	4217	2,049,038 – 2,049,122	-	11	92	71.58	-1.27	0.69	0.987345
3076	dm3.chr2R	2,049,503 – 2,049,586	FBnoncoding="tRNA;ID=FBtr0086015;Name=tRNA:N5:42Ac-RA;Parent=FBgn0011933;Dbxref=FlyBase_Annotation_IDs:CR30518-RA;score_text=Weakly" tRNAscann="Asn_chr2R_trna97" - - "Rfam_10.0=RF00005;tRNA;ABLA01037487.1/809-882\|1.2e-18" "Noncode_2.0=n125534_u124632_DQ592147_piRNA_human\|2.6e-07" "unique_Noncode_2.0=u124631_piRNA_human\|2.2e-07" -	4218	2,049,503 – 2,049,586	+	12	101	58.21	-1.37	0.55	0.998493
3076	dm3.chr2R	2,049,503 – 2,049,586		4219	2,049,503 – 2,049,586	-	12	101	58.21	-1.06	0.42	0.962581
3077	dm3.chr2R	2,059,000 – 2,059,077	FBnoncoding="tRNA;ID=FBtr0086007;Name=tRNA:K2:42Ad-RA;Parent=FBgn0011890;Dbxref=FlyBase_Annotation_IDs:CR30515-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna94" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|7.7e-29" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|6.6e-17" "unique_Noncode_2.0=u201439_mRNAlike\|5.7e-17" -	4220	2,059,000 – 2,059,077	+	11	80	96.17	-3.14	1.00	0.997740
3077	dm3.chr2R	2,059,000 – 2,059,077		4221	2,059,000 – 2,059,077	-	11	80	96.17	-2.48	1.00	0.993338
3079	dm3.chr2R	2,064,450 – 2,064,511	- - - - - - - -	4224	2,064,450 – 2,064,511	+	3	61	88.52	-2.99	0.89	0.994265
3079	dm3.chr2R	2,064,450 – 2,064,511	- - - - - - - -	4225	2,064,450 – 2,064,511	-	3	61	88.52	-2.92	0.93	0.995549
3082	dm3.chr2R	2,077,883 – 2,077,986	FBnoncoding="tRNA;ID=FBtr0085989;Name=tRNA:N5:42Ad-RA;Parent=FBgn0011934;Dbxref=FlyBase_Annotation_IDs:CR30319-RA;score_text=Weakly" tRNAscann="Asn_chr2R_trna10" - intron="intron;ID=intron_FBgn0033068:10_FBgn0033068:9;Name=Ptr-in;Parent=FBtr0086003;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABLA01037487.1/809-882\|4.0e-22" "Noncode_2.0=n125534_u124632_DQ592147_piRNA_human\|3.3e-07" "unique_Noncode_2.0=u124631_piRNA_human\|2.9e-07" -	4230	2,077,883 – 2,077,986	+	12	113	75.21	-1.30	0.75	0.979506
3082	dm3.chr2R	2,077,883 – 2,077,986		4231	2,077,883 – 2,077,986	-	12	113	75.21	-1.32	0.64	0.958624
3083	dm3.chr2R	2,098,567 – 2,098,658	- - - intron="intron;ID=intron_FBgn0021847:6_FBgn0021847:5;Name=l(2)k14710-in;Parent=FBtr0086000;parent_type=mRNA" - - - -	4233	2,098,567 – 2,098,658	-	7	96	56.51	-1.74	0.36	0.987883
3089	dm3.chr2R	2,121,210 – 2,121,302	- - CDS="CDS;ID=CDS_CG8276:2_515;Name=bin3-cds;Parent=FBtr0085992,FBtr0085993;parent_type=mRNA" - - - - -	4240	2,121,210 – 2,121,302	+	7	105	75.92	-1.47	0.71	0.932866
3090	dm3.chr2R	2,146,271 – 2,146,415	- - - - - - - -	4241	2,146,271 – 2,146,415	+	5	153	64.17	-2.16	0.39	0.979150
3090	dm3.chr2R	2,146,271 – 2,146,415	- - - - - - - -	4242	2,146,271 – 2,146,415	-	5	153	64.17	-2.18	0.39	0.980575
3091	dm3.chr2R	2,199,419 – 2,199,530	- - - - - - - -	4243	2,199,419 – 2,199,528	-	4	119	55.90	-1.61	0.38	0.933233
3091	dm3.chr2R	2,199,419 – 2,199,530	- - - - - - - -	4244	2,199,421 – 2,199,530	-	4	119	51.63	-1.45	0.38	0.945747
3094	dm3.chr2R	2,243,721 – 2,243,800	- - - - - - - -	4247	2,243,721 – 2,243,800	-	3	79	75.57	-2.26	0.84	0.985938
3096	dm3.chr2R	2,409,432 – 2,409,583	- - - intron="intron;ID=intron_FBgn0086655:1_FBgn0086655:2;Name=jing-in;Parent=FBtr0114362;parent_type=mRNA" - - - -	4251	2,409,468 – 2,409,583	+	5	115	72.21	-2.56	0.45	0.983897
3097	dm3.chr2R	2,415,147 – 2,415,268	- - - intron="intron;ID=intron_FBgn0086655:1_FBgn0086655:2;Name=jing-in;Parent=FBtr0114362;parent_type=mRNA" - - - -	4252	2,415,147 – 2,415,268	+	3	125	90.62	-2.61	0.76	0.904121
3098	dm3.chr2R	2,421,008 – 2,421,098	- - - - - - - -	4254	2,421,008 – 2,421,098	+	4	90	86.48	-2.21	0.80	0.934818
3102	dm3.chr2R	2,472,630 – 2,472,760	- - - - - - - -	4258	2,472,630 – 2,472,723	-	7	96	66.92	-1.52	0.42	0.911220
3104	dm3.chr2R	2,491,964 – 2,492,018	- - - - - - - -	4262	2,491,964 – 2,492,018	-	4	54	93.52	-2.15	0.87	0.904761
3106	dm3.chr2R	2,503,634 – 2,503,766	- - CDS="CDS;ID=CDS_FBgn0086655:8_522;Name=jing-cds;Parent=FBtr0301636;parent_type=mRNA" - - - - -	4265	2,503,634 – 2,503,739	-	6	105	81.33	-3.35	0.79	0.998887
3106	dm3.chr2R	2,503,634 – 2,503,766		4266	2,503,664 – 2,503,766	-	6	104	81.17	-3.41	0.78	0.998946
3111	dm3.chr2R	2,566,853 – 2,566,905	- - - intron="intron;ID=intron_FBgn0259977:3_FBgn0259977:2;Name=Tdc1-in;Parent=FBtr0086143;parent_type=mRNA" - - - -	4273	2,566,853 – 2,566,905	-	6	61	72.48	-2.00	0.88	0.994442
3113	dm3.chr2R	2,594,528 – 2,594,627	- - - intron="intron;ID=intron_FBgn0033095:8_FBgn0033095:7;Name=CG3409-in;Parent=FBtr0302166;parent_type=mRNA" - - - -	4276	2,594,528 – 2,594,627	-	4	107	65.54	-1.99	0.42	0.915746
3115	dm3.chr2R	2,638,629 – 2,638,749	- - - intron="intron;ID=intron_FBgn0027066:2_FBgn0027066:4;Name=Eb1-in;Parent=FBtr0086129;parent_type=mRNA" - - - -	4278	2,638,629 – 2,638,749	+	3	120	70.03	-3.18	0.46	0.986148
3118	dm3.chr2R	2,664,924 – 2,665,009	- - - intron="intron;ID=intron_FBgn0085421:17_FBgn0085421:16;Name=Epac-in;Parent=FBtr0112636;parent_type=mRNA" - - - -	4281	2,664,924 – 2,665,009	-	7	91	68.77	-1.81	0.43	0.961466
3119	dm3.chr2R	2,669,873 – 2,669,968	- - - - - - - -	4282	2,669,873 – 2,669,964	+	3	102	86.93	-2.03	0.90	0.956509
3119	dm3.chr2R	2,669,873 – 2,669,968	- - - - - - - -	4283	2,669,877 – 2,669,968	+	3	102	84.64	-1.81	0.88	0.921196
3120	dm3.chr2R	2,677,074 – 2,677,159	- - - - - - - -	4284	2,677,074 – 2,677,159	+	3	108	76.85	-2.77	0.64	0.982922
3120	dm3.chr2R	2,677,074 – 2,677,159	- - - - - - - -	4285	2,677,074 – 2,677,159	-	3	108	76.85	-2.19	0.66	0.915501
3122	dm3.chr2R	2,710,329 – 2,710,424	- - - - - - - -	4288	2,710,329 – 2,710,424	-	8	111	72.58	-1.99	0.47	0.926652
3127	dm3.chr2R	2,751,532 – 2,751,648	- - - intron="intron;ID=intron_CG9446:5_CG9446:6;Name=coro-in;Parent=FBtr0086207,FBtr0086208,FBtr0086209;parent_type=mRNA" - - - -	4294	2,751,532 – 2,751,625	-	9	102	78.53	-2.33	0.55	0.967791
				4295	2,751,552 – 2,751,648	+	9	108	72.20	-2.43	0.44	0.988294
				4296	2,751,552 – 2,751,648	-	9	108	72.20	-1.97	0.64	0.995582
3128	dm3.chr2R	2,770,625 – 2,770,752	- - - - - - - -	4297	2,770,625 – 2,770,722	+	6	117	71.13	-2.37	0.62	0.995784
				4299	2,770,647 – 2,770,752	+	6	117	70.12	-1.99	0.69	0.996385
				4300	2,770,647 – 2,770,752	-	6	117	70.12	-2.08	0.54	0.989960
3129	dm3.chr2R	2,772,417 – 2,772,469	- - - - - - - -	4301	2,772,417 – 2,772,469	+	3	52	90.97	-2.29	0.94	0.980495
3129	dm3.chr2R	2,772,417 – 2,772,469	- - - - - - - -	4302	2,772,417 – 2,772,469	-	3	52	90.97	-2.09	0.93	0.961896
3132	dm3.chr2R	2,795,476 – 2,795,538	- - - intron="intron;ID=intron_CG30158:3_CG30158:4;Name=CG30158-in;Parent=FBtr0086165;parent_type=mRNA" - - - -	4305	2,795,476 – 2,795,538	+	3	62	84.27	-2.77	0.89	0.993463
3132	dm3.chr2R	2,795,476 – 2,795,538		4306	2,795,476 – 2,795,538	-	3	62	84.27	-2.42	0.95	0.992270
3138	dm3.chr2R	2,819,468 – 2,819,600	- - CDS="CDS;ID=CDS_FBgn0053558:11_582;Name=mim-cds;Parent=FBtr0302579;parent_type=mRNA" - - - - -	4313	2,819,491 – 2,819,600	+	12	112	73.50	-2.37	0.34	0.940706
3140	dm3.chr2R	2,823,945 – 2,824,074	- - - intron="intron;ID=intron_FBgn0053558:19_FBgn0053558:18;Name=mim-in;Parent=FBtr0302577,FBtr0302578,FBtr0302579,FBtr0113470,FBtr0302034,FBtr0302035;parent_type=mRNA" - - - -	4316	2,823,945 – 2,824,074	+	6	141	71.23	-1.64	0.67	0.984538
3141	dm3.chr2R	2,829,324 – 2,829,436	- - - intron="intron;ID=intron_FBgn0053558:21_FBgn0053558:20;Name=mim-in;Parent=FBtr0302577,FBtr0302578,FBtr0302579,FBtr0113470,FBtr0302034,FBtr0302035;parent_type=mRNA" - - - -	4317	2,829,324 – 2,829,436	-	6	121	78.72	-2.69	0.67	0.993913
3142	dm3.chr2R	2,834,282 – 2,834,379	FBnoncoding="tRNA;ID=FBtr0086190;Name=tRNA:K2:42Ea-RA;Parent=FBgn0011892;Dbxref=FlyBase_Annotation_IDs:CR30300-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna91" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|1.0e-28" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|8.8e-17" "unique_Noncode_2.0=u201439_mRNAlike\|7.7e-17" -	4318	2,834,282 – 2,834,379	+	10	109	69.11	-2.46	0.92	0.998668
3142	dm3.chr2R	2,834,282 – 2,834,379		4319	2,834,282 – 2,834,379	-	10	109	69.11	-0.99	0.86	0.989279
3143	dm3.chr2R	2,835,230 – 2,835,329	FBnoncoding="tRNA;ID=FBtr0086189;Name=tRNA:K2:42Eb-RA;Parent=FBgn0011893;Dbxref=FlyBase_Annotation_IDs:CR30301-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna90" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|1.1e-28" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|2.3e-17" "unique_Noncode_2.0=u201439_mRNAlike\|2.0e-17" -	4320	2,835,230 – 2,835,329	+	13	107	83.62	-2.66	0.93	0.997117
3143	dm3.chr2R	2,835,230 – 2,835,329		4321	2,835,230 – 2,835,329	-	13	107	83.62	-1.84	0.96	0.987261
3144	dm3.chr2R	2,835,782 – 2,835,865	FBnoncoding="tRNA;ID=FBtr0086188;Name=tRNA:K2:42Ec-RA;Parent=FBgn0011894;Dbxref=FlyBase_Annotation_IDs:CR30302-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna89" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|8.5e-29" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|1.8e-17" "unique_Noncode_2.0=u201439_mRNAlike\|1.6e-17" -	4322	2,835,782 – 2,835,865	+	12	85	82.10	-2.28	0.92	0.994931
3144	dm3.chr2R	2,835,782 – 2,835,865		4323	2,835,782 – 2,835,865	-	12	85	82.10	-2.14	0.93	0.993424
3145	dm3.chr2R	2,836,624 – 2,836,754	FBnoncoding="tRNA;ID=FBtr0086187;Name=tRNA:K2:42Ed-RA;Parent=FBgn0011895;Dbxref=FlyBase_Annotation_IDs:CR30303-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna88" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|1.4e-28" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|3.1e-17" "unique_Noncode_2.0=u201439_mRNAlike\|2.7e-17" -	4324	2,836,624 – 2,836,754	+	13	149	69.46	-1.97	0.78	0.998708
3145	dm3.chr2R	2,836,624 – 2,836,754		4325	2,836,624 – 2,836,754	-	13	149	69.46	-1.39	0.78	0.994726
3146	dm3.chr2R	2,840,154 – 2,840,236	- - - - - - - -	4326	2,840,154 – 2,840,236	+	4	93	53.17	-0.96	0.50	0.950807
3148	dm3.chr2R	2,871,632 – 2,871,813	- - - - - - - -	4329	2,871,694 – 2,871,813	-	5	120	91.62	-2.47	0.83	0.949894
3154	dm3.chr2R	2,895,628 – 2,895,720	- - CDS="CDS;ID=CDS_FBgn0033124:3_524;Name=Tsp42Ec-cds;Parent=FBtr0086179;parent_type=mRNA" - - - - -	4339	2,895,628 – 2,895,720	+	12	95	68.04	-1.22	0.50	0.952758
3155	dm3.chr2R	2,900,092 – 2,900,187	- - - intron="intron;ID=intron_CG10106:1_CG10106:2;Name=Tsp42Ee-in;Parent=FBtr0086180;parent_type=mRNA" - - - -	4340	2,900,092 – 2,900,187	+	6	100	74.69	-2.01	0.73	0.992837
3156	dm3.chr2R	2,913,777 – 2,913,842	- - - intron="intron;ID=intron_FBgn0033127:1_FBgn0033127:2;Name=Tsp42Ef-in;Parent=FBtr0089023;parent_type=mRNA" - - - -	4341	2,913,777 – 2,913,842	+	8	65	67.88	-1.22	0.52	0.971355
3163	dm3.chr2R	2,982,118 – 2,982,216	- - - intron="intron;ID=intron_FBgn0028642:1_FBgn0028642:3;Name=esn-in;Parent=FBtr0089038;parent_type=mRNA" - - - -	4350	2,982,118 – 2,982,216	+	11	113	86.62	-1.94	0.78	0.929159
3168	dm3.chr2R	3,026,387 – 3,026,524	- - - - - - - -	4357	3,026,410 – 3,026,524	+	12	122	76.09	-1.89	0.56	0.975371
3169	dm3.chr2R	3,033,408 – 3,033,498	- - - - - - - -	4358	3,033,408 – 3,033,498	-	10	113	80.15	-2.54	0.65	0.983530
3172	dm3.chr2R	3,060,929 – 3,061,052	- - - intron="intron;ID=intron_CG11084:7_CG11084:2;Name=pk-in;Parent=FBtr0089043;parent_type=mRNA" - - - -	4361	3,060,929 – 3,061,052	+	8	131	74.52	-2.72	0.36	0.954281
3176	dm3.chr2R	3,118,490 – 3,118,615	- - - - - - - -	4367	3,118,490 – 3,118,591	-	12	120	80.49	-2.36	0.71	0.985335
				4368	3,118,519 – 3,118,615	+	11	115	67.44	-1.56	0.61	0.988338
				4369	3,118,519 – 3,118,615	-	11	115	67.44	-1.59	0.70	0.994355
3177	dm3.chr2R	3,123,740 – 3,123,832	- - - - - - - -	4370	3,123,740 – 3,123,832	+	6	96	57.33	-1.15	0.42	0.954768
3181	dm3.chr2R	3,165,800 – 3,165,871	- - - - - - - -	4374	3,165,800 – 3,165,871	+	7	71	61.32	-1.20	0.39	0.921070
3185	dm3.chr2R	3,190,949 – 3,191,007	- - - - - - - -	4378	3,190,949 – 3,191,007	-	4	61	91.60	-3.00	0.89	0.993046
3186	dm3.chr2R	3,195,315 – 3,195,414	- - - - - - - -	4379	3,195,315 – 3,195,414	+	10	113	68.96	-2.00	0.38	0.924394
3188	dm3.chr2R	3,207,380 – 3,207,472	- - - - - - - -	4381	3,207,380 – 3,207,472	-	5	92	60.65	-2.86	0.58	0.999864
3199	dm3.chr2R	3,358,674 – 3,358,767	- - - intron="intron;ID=intron_FBgn0010548:14_FBgn0010548:13;Name=Aldh-III-in;Parent=FBtr0088993,FBtr0088996,FBtr0300476,FBtr0300477,FBtr0300478,FBtr0300479,FBtr0300480,FBtr0300481;parent_type=mRNA" - - - -	4393	3,358,674 – 3,358,767	-	7	99	64.40	-2.34	0.31	0.959805
3201	dm3.chr2R	3,363,619 – 3,363,786	- - - intron="intron;ID=intron_FBgn0010548:23_FBgn0010548:22;Name=Aldh-III-in;Parent=FBtr0300476,FBtr0300481;parent_type=mRNA" - - - -	4396	3,363,682 – 3,363,786	+	3	115	85.80	-2.33	0.81	0.946327
3202	dm3.chr2R	3,370,959 – 3,371,133	- - - intron="intron;ID=intron_FBgn0259745:2_FBgn0259745:1;Name=wech-in;Parent=FBtr0300080,FBtr0300081,FBtr0300082,FBtr0300083,FBtr0300084;parent_type=mRNA" - - - -	4398	3,370,999 – 3,371,106	+	13	114	66.85	-1.80	0.33	0.913592
3203	dm3.chr2R	3,401,615 – 3,401,708	- - - - - - - -	4400	3,401,615 – 3,401,708	-	3	93	78.63	-2.05	0.78	0.933813
3206	dm3.chr2R	3,428,360 – 3,428,453	- - - - - - - -	4403	3,428,360 – 3,428,450	+	5	101	61.70	-1.19	0.48	0.930941
				4404	3,428,360 – 3,428,450	-	5	101	61.70	-1.19	0.48	0.930941
				4405	3,428,360 – 3,428,453	+	6	102	51.65	-1.17	0.37	0.944418
3207	dm3.chr2R	3,431,017 – 3,431,084	- - - - - - - -	4408	3,431,017 – 3,431,084	-	5	72	95.94	-1.73	1.02	0.972328
3213	dm3.chr2R	3,477,524 – 3,477,705	- - - - - - - -	4419	3,477,553 – 3,477,668	-	6	115	70.03	-2.60	0.55	0.998833
3213	dm3.chr2R	3,477,524 – 3,477,705	- - - - - - - -	4421	3,477,593 – 3,477,705	-	6	112	70.50	-2.16	0.39	0.938043
3214	dm3.chr2R	3,481,236 – 3,481,332	- - - - - - - -	4422	3,481,236 – 3,481,332	-	10	113	54.79	-0.86	0.46	0.968533
3217	dm3.chr2R	3,521,876 – 3,521,994	- - - intron="intron;ID=intron_FBgn0050492:7_FBgn0050492:8;Name=CG30492-in;Parent=FBtr0088914,FBtr0088915,FBtr0088916,FBtr0088913,FBtr0113382;parent_type=mRNA" - - - -	4426	3,521,876 – 3,521,994	+	3	120	87.15	-2.55	0.86	0.982852
3218	dm3.chr2R	3,522,873 – 3,522,967	- - - intron="intron;ID=intron_FBgn0050492:9_FBgn0050492:12;Name=CG30492-in;Parent=FBtr0088914,FBtr0088915,FBtr0088916,FBtr0088913,FBtr0113382;parent_type=mRNA" - - - -	4428	3,522,873 – 3,522,967	+	7	99	77.40	-2.11	0.83	0.993787
3220	dm3.chr2R	3,546,584 – 3,546,658	- - - - - - - -	4430	3,546,584 – 3,546,658	+	4	79	69.28	-1.57	0.69	0.964637
3226	dm3.chr2R	3,591,089 – 3,591,192	- - - intron="intron;ID=intron_FBgn0003733:3_FBgn0003733:1;Name=tor-in;Parent=FBtr0112837;parent_type=mRNA" - - - -	4438	3,591,089 – 3,591,192	+	6	120	69.46	-2.59	0.48	0.995029
3226	dm3.chr2R	3,591,089 – 3,591,192		4439	3,591,089 – 3,591,192	-	6	120	69.46	-2.18	0.69	0.997612
3234	dm3.chr2R	3,631,218 – 3,631,326	- - - - - - - -	4448	3,631,218 – 3,631,326	-	5	110	66.73	-1.57	0.54	0.929966
3235	dm3.chr2R	3,632,473 – 3,632,572	- - - - - - - -	4449	3,632,473 – 3,632,572	+	4	99	94.44	-2.71	0.91	0.985291
3236	dm3.chr2R	3,639,654 – 3,639,759	- - - - - - - -	4453	3,639,655 – 3,639,759	+	4	105	90.24	-2.22	0.84	0.923176
3241	dm3.chr2R	3,663,343 – 3,663,479	- - - - - - - -	4461	3,663,380 – 3,663,479	+	5	109	68.63	-1.85	0.58	0.978839
3243	dm3.chr2R	3,679,160 – 3,679,276	- - - - - - - -	4463	3,679,160 – 3,679,276	+	5	120	76.29	-2.44	0.58	0.967094
3245	dm3.chr2R	3,716,509 – 3,716,593	- - - - - - - -	4465	3,716,509 – 3,716,593	+	6	84	72.54	-2.80	0.60	0.999186
3245	dm3.chr2R	3,716,509 – 3,716,593	- - - - - - - -	4466	3,716,509 – 3,716,593	-	6	84	72.54	-2.58	0.46	0.992789
3246	dm3.chr2R	3,719,619 – 3,719,703	- - - - - - - -	4467	3,719,619 – 3,719,703	+	6	84	72.54	-2.80	0.60	0.999186
3246	dm3.chr2R	3,719,619 – 3,719,703	- - - - - - - -	4468	3,719,619 – 3,719,703	-	6	84	72.54	-2.58	0.46	0.992789
3247	dm3.chr2R	3,727,113 – 3,727,227	- - - intron="intron;ID=intron_FBgn0085390:6_FBgn0085390:5;Name=Dgk-in;Parent=FBtr0112579,FBtr0112580,FBtr0112581;parent_type=mRNA" - - - -	4469	3,727,113 – 3,727,213	+	12	113	81.44	-3.11	0.51	0.989324
				4470	3,727,113 – 3,727,213	-	12	113	81.44	-2.76	0.57	0.984583
				4471	3,727,135 – 3,727,227	+	12	102	81.33	-3.00	0.48	0.985136
				4472	3,727,135 – 3,727,227	-	12	102	81.33	-3.10	0.54	0.994869
3248	dm3.chr2R	3,729,784 – 3,729,842	- - - intron="intron;ID=intron_FBgn0085390:6_FBgn0085390:5;Name=Dgk-in;Parent=FBtr0112579,FBtr0112580,FBtr0112581;parent_type=mRNA" - - - -	4473	3,729,784 – 3,729,842	+	4	58	88.56	-2.18	0.90	0.970843
3249	dm3.chr2R	3,737,064 – 3,737,114	- - - intron="intron;ID=intron_FBgn0085390:16_FBgn0085390:15;Name=Dgk-in;Parent=FBtr0112580,FBtr0112581;parent_type=mRNA" - - - -	4474	3,737,064 – 3,737,114	-	3	50	98.67	-2.21	0.94	0.943832
3253	dm3.chr2R	3,787,504 – 3,787,602	- - - intron="intron;ID=intron_FBgn0050377:2_FBgn0050377:3;Name=CG30377-in;Parent=FBtr0088844;parent_type=mRNA" - - - -	4478	3,787,504 – 3,787,602	-	6	116	61.32	-2.09	0.33	0.938011
3257	dm3.chr2R	3,793,394 – 3,793,487	- - CDS="CDS;ID=CDS_FBgn0050377:4_678;Name=CG30377-cds;Parent=FBtr0088844;parent_type=mRNA" - - - - -	4483	3,793,394 – 3,793,487	-	8	106	62.13	-0.83	0.57	0.972365
3259	dm3.chr2R	3,799,137 – 3,799,229	- - - intron="intron;ID=intron_FBgn0050377:4_FBgn0050377:5;Name=CG30377-in;Parent=FBtr0088844;parent_type=mRNA" - - - -	4485	3,799,137 – 3,799,229	+	5	101	86.99	-2.28	0.77	0.930575
3260	dm3.chr2R	3,809,169 – 3,809,219	- - - intron="intron;ID=intron_FBgn0026393:3_FBgn0026393:2;Name=Or43b-in;Parent=FBtr0088887;parent_type=mRNA" - - - -	4486	3,809,169 – 3,809,219	-	3	50	94.67	-2.02	0.91	0.906373
3261	dm3.chr2R	3,834,626 – 3,834,760	- - - - - - - -	4487	3,834,626 – 3,834,728	+	5	110	88.40	-4.02	0.84	0.998772
3261	dm3.chr2R	3,834,626 – 3,834,760	- - - - - - - -	4488	3,834,626 – 3,834,728	-	5	110	88.40	-3.12	0.72	0.984510
3263	dm3.chr2R	3,875,040 – 3,875,144	- - - - - - - -	4492	3,875,040 – 3,875,144	+	4	114	83.44	-2.32	0.76	0.949908
3263	dm3.chr2R	3,875,040 – 3,875,144	- - - - - - - -	4493	3,875,040 – 3,875,144	-	4	114	83.44	-2.35	0.77	0.959130
3264	dm3.chr2R	3,905,992 – 3,906,126	- - - - - - - -	4494	3,905,992 – 3,906,102	+	8	112	65.95	-2.46	0.56	0.999228
3264	dm3.chr2R	3,905,992 – 3,906,126	- - - - - - - -	4495	3,905,992 – 3,906,102	-	8	112	65.95	-1.47	0.51	0.965685
3265	dm3.chr2R	3,912,950 – 3,913,042	- - - - - - - -	4498	3,912,950 – 3,913,042	-	8	95	63.23	-2.14	0.31	0.967638
3271	dm3.chr2R	3,948,935 – 3,949,032	- - - intron="intron;ID=intron_CG12769:1_CG12769:2;Name=CG12769-in;Parent=FBtr0088827;parent_type=mRNA" - - - -	4504	3,948,935 – 3,949,032	+	10	111	89.17	-1.56	0.93	0.916430
3273	dm3.chr2R	3,965,558 – 3,965,669	- - - - - - - -	4507	3,965,558 – 3,965,669	+	6	115	73.98	-2.40	0.54	0.988316
3277	dm3.chr2R	4,004,555 – 4,004,649	- - - intron="intron;ID=intron_FBgn0050372:7_FBgn0050372:5;Name=CG30372-in;Parent=FBtr0300954;parent_type=mRNA" - - - -	4512	4,004,555 – 4,004,649	+	11	108	63.45	-1.47	0.36	0.909699
				4513	4,004,555 – 4,004,649	-	11	108	63.45	-1.82	0.30	0.902830
				4514	4,004,559 – 4,004,649	+	11	105	62.26	-1.48	0.39	0.960956
3281	dm3.chr2R	4,030,850 – 4,030,953	- - - intron="intron;ID=intron_FBgn0033269:17_FBgn0033269:16;Name=Lpin-in;Parent=FBtr0303574;parent_type=mRNA" - - - -	4519	4,030,850 – 4,030,953	+	4	108	69.17	-2.00	0.58	0.983211
3283	dm3.chr2R	4,045,955 – 4,046,053	FBnoncoding="tRNA;ID=FBtr0088787;Name=tRNA:CR30297-RA;Parent=FBgn0050297;Alias=CR30297-RA;Dbxref=FlyBase_Annotation_IDs:CR30297-RA;score_text=Weakly" tRNAscann="Ile_chr2R_trna11" - - "Rfam_10.0=RF00005;tRNA;ABJB010861939.1/779-852\|6.4e-27" - - "mirBase_v16=cre-MIR916\|6.5e-15"	4522	4,045,955 – 4,046,053	-	12	110	81.31	-1.67	0.90	0.979040
3289	dm3.chr2R	4,131,557 – 4,131,608	- - - - - - - -	4529	4,131,557 – 4,131,608	+	5	51	95.69	-3.28	0.99	0.997818
3289	dm3.chr2R	4,131,557 – 4,131,608	- - - - - - - -	4530	4,131,557 – 4,131,608	-	5	51	95.69	-2.17	0.96	0.973154
3290	dm3.chr2R	4,138,030 – 4,138,125	- - - - - - - -	4532	4,138,030 – 4,138,125	-	8	95	71.43	-2.33	0.60	0.998066
3295	dm3.chr2R	4,183,057 – 4,183,115	- - - - - - - -	4538	4,183,057 – 4,183,115	+	4	58	90.23	-2.52	0.93	0.989648
3297	dm3.chr2R	4,188,971 – 4,189,066	- - - - - - - -	4540	4,188,971 – 4,189,066	+	7	112	63.42	-1.77	0.67	0.998596
3298	dm3.chr2R	4,190,999 – 4,191,133	- - - - - - - -	4541	4,190,999 – 4,191,109	+	12	113	75.47	-2.82	0.69	0.999213
3298	dm3.chr2R	4,190,999 – 4,191,133	- - - - - - - -	4542	4,191,037 – 4,191,133	+	9	102	85.26	-3.00	0.53	0.941300
3300	dm3.chr2R	4,196,718 – 4,196,802	- - - - - - - -	4544	4,196,718 – 4,196,802	-	11	90	53.74	-1.02	0.40	0.959855
3303	dm3.chr2R	4,240,612 – 4,240,708	- - - intron="intron;ID=intron_FBgn0261588:3_FBgn0261588:5;Name=pdm3-in;Parent=FBtr0302919,FBtr0302920;parent_type=mRNA" - - - -	4550	4,240,612 – 4,240,708	+	5	96	96.04	-1.78	0.95	0.909269
3307	dm3.chr2R	4,249,865 – 4,250,017	- - - intron="intron;ID=intron_FBgn0261588:3_FBgn0261588:5;Name=pdm3-in;Parent=FBtr0302919,FBtr0302920;parent_type=mRNA" - - - -	4556	4,249,900 – 4,250,017	+	6	120	74.47	-3.55	0.56	0.999630
3307	dm3.chr2R	4,249,865 – 4,250,017		4557	4,249,900 – 4,250,017	-	6	120	74.47	-4.86	0.66	0.999910
3309	dm3.chr2R	4,255,518 – 4,255,617	- - - intron="intron;ID=intron_FBgn0261588:3_FBgn0261588:5;Name=pdm3-in;Parent=FBtr0302919,FBtr0302920;parent_type=mRNA" - - - -	4559	4,255,518 – 4,255,617	-	3	99	82.47	-2.22	0.79	0.941232
3312	dm3.chr2R	4,264,635 – 4,264,767	- - - - - - - -	4563	4,264,635 – 4,264,727	+	11	109	79.99	-2.71	0.61	0.993372
3312	dm3.chr2R	4,264,635 – 4,264,767	- - - - - - - -	4564	4,264,635 – 4,264,727	-	11	109	79.99	-4.09	0.70	0.999716
3316	dm3.chr2R	4,298,126 – 4,298,240	- - - intron="intron;ID=intron_FBgn0033289:6_FBgn0033289:5;Name=CG2121-in;Parent=FBtr0088764;parent_type=mRNA" - - - -	4570	4,298,126 – 4,298,240	+	5	120	88.75	-2.45	0.86	0.979677
3318	dm3.chr2R	4,332,483 – 4,332,583	FBnoncoding="pre_miRNA;ID=FBtr0304479;Name=mir-986-RM;Parent=FBgn0262316;Alias=CR43023-RM;Dbxref=FlyBase_Annotation_IDs:CR43023-RM,miRBase:MI0005845" - - intron="intron;ID=intron_CG2060:1_CG2060:2;Name=Cyp4e2-in;Parent=FBtr0088745;parent_type=mRNA" - - - "mirBase_v16=dme-mir-986\|1.0e-50"	4572	4,332,483 – 4,332,583	+	13	111	61.45	-3.23	0.12	0.974930
3318	dm3.chr2R	4,332,483 – 4,332,583		4573	4,332,483 – 4,332,583	-	13	111	61.45	-2.97	0.26	0.997847
3322	dm3.chr2R	4,368,609 – 4,368,713	- - - intron="intron;ID=intron_FBgn0050361:7_FBgn0050361:6;Name=mtt-in;Parent=FBtr0088756,FBtr0273325,FBtr0273326,FBtr0273327;parent_type=mRNA" - - - -	4577	4,368,609 – 4,368,713	+	3	130	59.34	-2.28	0.49	0.984863
3326	dm3.chr2R	4,396,789 – 4,396,886	- - - intron="intron;ID=intron_FBgn0050361:20_FBgn0050361:19;Name=mtt-in;Parent=FBtr0273325;parent_type=mRNA" - - - -	4582	4,396,789 – 4,396,886	-	3	97	84.00	-2.02	0.93	0.975047
3328	dm3.chr2R	4,418,158 – 4,418,250	- - - intron="intron;ID=intron_FBgn0050361:21_FBgn0050361:20;Name=mtt-in;Parent=FBtr0273325,FBtr0273326;parent_type=mRNA" - - - -	4584	4,418,158 – 4,418,250	-	6	120	64.01	-1.24	0.57	0.936393
3332	dm3.chr2R	4,426,612 – 4,426,704	- - - - - - - -	4588	4,426,612 – 4,426,704	-	4	101	67.36	-3.15	0.33	0.978212
3334	dm3.chr2R	4,432,972 – 4,433,087	- - - - - - - -	4590	4,432,972 – 4,433,087	-	3	120	93.89	-2.27	0.93	0.967442
3337	dm3.chr2R	4,446,725 – 4,446,832	- - - - - - - -	4593	4,446,725 – 4,446,821	+	8	99	74.26	-2.12	0.44	0.928789
3341	dm3.chr2R	4,477,794 – 4,477,853	- - - - - - - -	4598	4,477,794 – 4,477,853	-	5	60	82.15	-3.32	0.56	0.992548
3343	dm3.chr2R	4,492,605 – 4,492,688	- - - intron="intron;ID=intron_FBgn0033310:1_FBgn0033310:2;Name=rgr-in;Parent=FBtr0301542;parent_type=mRNA" - - - -	4600	4,492,605 – 4,492,688	+	4	91	77.88	-2.46	0.68	0.983697
3350	dm3.chr2R	4,559,783 – 4,559,886	- - - intron="intron;ID=intron_CG8732:60_CG8732:3;Name=Acsl-in;Parent=FBtr0100429;parent_type=mRNA" - - - -	4608	4,559,783 – 4,559,886	+	5	103	91.17	-2.26	0.87	0.955429
3353	dm3.chr2R	4,580,625 – 4,580,680	- - - - - - - -	4612	4,580,625 – 4,580,680	-	5	55	88.71	-3.08	0.98	0.997965
3355	dm3.chr2R	4,602,916 – 4,603,033	- - - - - - - -	4615	4,602,916 – 4,603,033	-	5	118	89.75	-2.79	0.73	0.955166
3357	dm3.chr2R	4,609,507 – 4,609,630	- - - intron="intron;ID=intron_FBgn0040777:6_FBgn0040777:3;Name=CG14767-in;Parent=FBtr0088720;parent_type=mRNA" - - - -	4618	4,609,507 – 4,609,602	+	6	109	85.82	-3.61	0.68	0.996762
3363	dm3.chr2R	4,641,841 – 4,641,949	- - CDS="CDS;ID=CDS_FBgn0027585:6_524;Name=CG8740-cds;Parent=FBtr0088711,FBtr0088712,FBtr0088713;parent_type=mRNA" - - - - -	4625	4,641,841 – 4,641,949	+	12	111	71.21	-1.43	0.50	0.951814
3366	dm3.chr2R	4,654,073 – 4,654,176	- - - - - - - -	4628	4,654,073 – 4,654,176	-	11	120	82.43	-2.00	0.65	0.906049
3368	dm3.chr2R	4,671,719 – 4,671,827	- - - - - - - -	4630	4,671,719 – 4,671,827	-	3	118	88.25	-2.00	0.90	0.942633
3371	dm3.chr2R	4,692,656 – 4,692,711	- - - intron="intron;ID=intron_FBgn0024189:1_FBgn0024189:2;Name=sns-in;Parent=FBtr0111043,FBtr0088635;parent_type=mRNA" - - - -	4635	4,692,656 – 4,692,711	-	5	55	81.64	-2.30	0.76	0.981196
3374	dm3.chr2R	4,706,444 – 4,706,543	- - - intron="intron;ID=intron_FBgn0024189:2_FBgn0024189:3;Name=sns-in;Parent=FBtr0111043,FBtr0088635;parent_type=mRNA" - - - -	4638	4,706,444 – 4,706,543	-	5	105	63.31	-2.04	0.34	0.921274
3386	dm3.chr2R	4,771,123 – 4,771,322	- - CDS="CDS;ID=CDS_FBgn0011286:30_582;Name=Rya-r44F-cds;Parent=FBtr0088638,FBtr0088639,FBtr0088640,FBtr0304568,FBtr0304569,FBtr0304570,FBtr0304571,FBtr0304572;parent_type=mRNA" - - - - -	4653	4,771,123 – 4,771,242	-	15	120	88.30	-3.83	0.70	0.998517
				4655	4,771,162 – 4,771,282	-	15	120	86.20	-3.65	0.64	0.998447
				4656	4,771,202 – 4,771,322	-	15	120	85.44	-2.17	0.67	0.938046
3387	dm3.chr2R	4,773,697 – 4,773,816	- - CDS="CDS;ID=CDS_FBgn0011286:35_631;Name=Rya-r44F-cds;Parent=FBtr0088637;parent_type=mRNA" - - - - -	4657	4,773,697 – 4,773,816	+	7	119	80.31	-2.27	0.60	0.964267
3387	dm3.chr2R	4,773,697 – 4,773,816		4658	4,773,697 – 4,773,816	-	7	119	80.31	-1.67	0.75	0.942714
3388	dm3.chr2R	4,789,945 – 4,790,082	- - CDS="CDS;ID=CDS_CG8261:6_520;Name=Ggamma1-cds;Parent=FBtr0088649;parent_type=mRNA" - - - - -	4662	4,789,970 – 4,790,082	-	15	115	72.11	-2.77	0.29	0.973627
3393	dm3.chr2R	4,838,711 – 4,838,775	- - - - - - - -	4667	4,838,711 – 4,838,775	+	3	64	94.79	-1.77	1.00	0.963480
3395	dm3.chr2R	4,840,704 – 4,840,800	- - CDS="CDS;ID=CDS_FBgn0011300:2_572;Name=babo-cds;Parent=FBtr0088658,FBtr0088659;parent_type=mRNA" - - - - -	4669	4,840,704 – 4,840,800	-	7	99	74.93	-1.84	0.53	0.937841
3396	dm3.chr2R	4,841,657 – 4,841,813	- - - intron="intron;ID=intron_FBgn0011300:2_FBgn0011300:3;Name=babo-in;Parent=FBtr0088658,FBtr0088659,FBtr0300599;parent_type=mRNA" - - - -	4670	4,841,657 – 4,841,813	-	6	156	82.77	-1.94	0.77	0.941450
3403	dm3.chr2R	4,961,320 – 4,961,378	- - - intron="intron;ID=intron_FBgn0011746:1_FBgn0011746:3;Name=ana-in;Parent=FBtr0300501;parent_type=mRNA" - - - -	4678	4,961,320 – 4,961,378	-	11	68	81.24	-2.56	0.66	0.980269
3405	dm3.chr2R	4,975,384 – 4,975,439	- - - - - - - -	4680	4,975,384 – 4,975,439	+	7	66	73.71	-3.69	0.73	0.999715
3407	dm3.chr2R	4,983,187 – 4,983,287	FBnoncoding="snoRNA;ID=FBtr0091614;Name=snoRNA:Or-aca5-RA;Parent=FBgn0086672;Alias=snoRNA:227-RA;Dbxref=FlyBase_Annotation_IDs:CR33637-RA,REFSEQ:NR_002540;score_text=Weakly" - - - - - - -	4682	4,983,187 – 4,983,287	+	11	107	85.63	-1.88	0.78	0.921455
3408	dm3.chr2R	4,984,560 – 4,984,671	FBnoncoding="snoRNA;ID=FBtr0091613;Name=snoRNA:Or-CD2-RA;Parent=FBgn0086603;Alias=snoRNA:461-RA;Dbxref=FlyBase_Annotation_IDs:CR33636-RA,REFSEQ:NR_002541;score_text=Weakly" - - - - "Noncode_2.0=n3508_u3136_AJ544006_snoRNA_Drosophila\|1.6e-49" "unique_Noncode_2.0=u3136_snoRNA_Drosophila\|1.4e-49" -	4683	4,984,560 – 4,984,671	+	13	120	78.85	-2.62	0.49	0.982434
3409	dm3.chr2R	4,993,529 – 4,993,628	- - - - - - - -	4684	4,993,529 – 4,993,628	+	7	104	69.15	-2.98	0.37	0.993564
3413	dm3.chr2R	5,072,978 – 5,073,079	- - CDS="CDS;ID=CDS_CG8024:6_519;Name=ltd-cds;Parent=FBtr0089932;parent_type=mRNA" - - - - -	4689	5,072,978 – 5,073,079	+	9	113	64.79	-1.92	0.34	0.920320
3414	dm3.chr2R	5,087,535 – 5,087,643	- - - - - - - -	4690	5,087,535 – 5,087,643	-	11	117	66.91	-2.03	0.31	0.907536
3416	dm3.chr2R	5,104,699 – 5,104,763	- - - - - - - -	4692	5,104,699 – 5,104,763	+	6	73	50.26	-1.45	0.34	0.912899
3418	dm3.chr2R	5,116,850 – 5,117,002	- - - intron="intron;ID=intron_CG2040:6_CG2040:7;Name=hig-in;Parent=FBtr0088606,FBtr0088607;parent_type=mRNA" - - - -	4695	5,116,850 – 5,116,970	-	5	120	72.65	-2.36	0.68	0.996582
				4696	5,116,890 – 5,117,002	+	5	120	72.27	-2.82	0.61	0.998061
				4697	5,116,890 – 5,117,002	-	5	120	72.27	-3.76	0.56	0.999667
3419	dm3.chr2R	5,122,199 – 5,122,287	- - CDS="CDS;ID=CDS_CG2040:2_502;Name=hig-cds;Parent=FBtr0088606,FBtr0088607,FBtr0088608;parent_type=mRNA" - - - - -	4698	5,122,199 – 5,122,287	-	12	94	69.73	-1.27	0.49	0.909026
3421	dm3.chr2R	5,156,614 – 5,156,725	- - - - - - - -	4701	5,156,614 – 5,156,725	+	7	117	61.83	-1.49	0.48	0.984412
3424	dm3.chr2R	5,187,372 – 5,187,478	- - - - - - - -	4705	5,187,372 – 5,187,478	+	5	125	76.14	-2.12	0.63	0.943813
3425	dm3.chr2R	5,193,973 – 5,194,093	- - - intron="intron;ID=intron_CG2078:1_CG2078:2;Name=Myd88-in;Parent=FBtr0088598;parent_type=mRNA" - - - -	4706	5,193,973 – 5,194,093	-	5	120	85.83	-1.74	0.87	0.924111
3426	dm3.chr2R	5,196,017 – 5,196,110	- - - - - - - -	4707	5,196,017 – 5,196,110	+	5	96	88.07	-2.33	0.76	0.912161
3427	dm3.chr2R	5,200,519 – 5,200,625	FBnoncoding="pre_miRNA;ID=FBtr0304277;Name=mir-987-RM;Parent=FBgn0262220;Alias=CR42927-RM;Dbxref=FlyBase_Annotation_IDs:CR42927-RM,miRBase:MI0005846" - - - - - - "mirBase_v16=dsi-mir-987-2\|6.9e-49"	4708	5,200,519 – 5,200,625	+	12	119	88.07	-2.39	0.89	0.989000
3427	dm3.chr2R	5,200,519 – 5,200,625		4709	5,200,519 – 5,200,625	-	12	119	88.07	-3.12	0.99	0.998300
3431	dm3.chr2R	5,216,054 – 5,216,146	- - - intron="intron;ID=intron_CG13739:2_CG13739:3;Name=CG13739-in;Parent=FBtr0088558;parent_type=mRNA" - - - -	4713	5,216,054 – 5,216,146	-	6	120	63.45	-2.95	0.56	0.999685
3432	dm3.chr2R	5,216,740 – 5,216,860	- - - intron="intron;ID=intron_CG13739:2_CG13739:3;Name=CG13739-in;Parent=FBtr0088558;parent_type=mRNA" - - - -	4714	5,216,740 – 5,216,860	-	6	120	66.67	-2.40	0.44	0.994852
3434	dm3.chr2R	5,228,044 – 5,228,134	- - - intron="intron;ID=intron_CG13739:2_CG13739:3;Name=CG13739-in;Parent=FBtr0088558;parent_type=mRNA" - - - -	4716	5,228,044 – 5,228,134	-	5	91	95.24	-1.79	0.94	0.906243
3435	dm3.chr2R	5,236,479 – 5,236,614	- - - - - - - -	4718	5,236,516 – 5,236,614	+	8	108	67.42	-1.97	0.43	0.967827
3436	dm3.chr2R	5,255,762 – 5,255,855	- - - - - - - -	4719	5,255,762 – 5,255,855	+	6	110	64.77	-1.87	0.44	0.970017
3436	dm3.chr2R	5,255,762 – 5,255,855	- - - - - - - -	4720	5,255,762 – 5,255,855	-	6	110	64.77	-1.82	0.46	0.974983
3437	dm3.chr2R	5,257,321 – 5,257,422	- - - - - - - -	4721	5,257,321 – 5,257,422	-	12	111	78.10	-2.12	0.55	0.961182
3439	dm3.chr2R	5,271,486 – 5,271,577	- - - - - - - -	4723	5,271,486 – 5,271,577	+	6	105	73.80	-1.43	0.69	0.926314
3440	dm3.chr2R	5,286,139 – 5,286,243	- - - - - - - -	4724	5,286,139 – 5,286,243	+	12	108	74.10	-2.34	0.40	0.968818
3440	dm3.chr2R	5,286,139 – 5,286,243	- - - - - - - -	4725	5,286,139 – 5,286,243	-	12	108	74.10	-2.63	0.48	0.996879
3441	dm3.chr2R	5,296,661 – 5,296,782	- - - - - - - -	4726	5,296,661 – 5,296,752	-	9	106	59.48	-0.92	0.44	0.925755
3442	dm3.chr2R	5,299,879 – 5,299,981	- - - intron="intron;ID=intron_FBgn0016078:10_FBgn0016078:9;Name=wun-in;Parent=FBtr0088552,FBtr0306111;parent_type=mRNA" - - - -	4728	5,299,879 – 5,299,980	-	5	111	75.21	-3.11	0.51	0.993834
3442	dm3.chr2R	5,299,879 – 5,299,981		4729	5,299,879 – 5,299,981	-	5	111	75.84	-2.95	0.52	0.989789
3446	dm3.chr2R	5,333,711 – 5,333,803	- - - - - - - -	4733	5,333,711 – 5,333,803	+	6	111	83.93	-2.44	0.66	0.924536
3446	dm3.chr2R	5,333,711 – 5,333,803	- - - - - - - -	4734	5,333,711 – 5,333,803	-	6	111	83.93	-2.68	0.58	0.910309
3448	dm3.chr2R	5,405,618 – 5,405,719	- - - intron="intron;ID=intron_FBgn0259246:10_FBgn0259246:13;Name=brp-in;Parent=FBtr0305059;parent_type=mRNA" - - - -	4736	5,405,618 – 5,405,719	-	5	104	74.46	-1.81	0.73	0.979288
3450	dm3.chr2R	5,430,892 – 5,430,995	- - - - - - - -	4738	5,430,892 – 5,430,995	+	5	120	72.91	-2.27	0.51	0.958262
3452	dm3.chr2R	5,441,245 – 5,441,352	FBnoncoding="pre_miRNA;ID=FBtr0304458;Name=mir-14-RM;Parent=FBgn0262447;Alias=CR43013-RM;Dbxref=FlyBase_Annotation_IDs:CR43013-RM,miRBase:MI0000136" - - - "Rfam_10.0=RF00752;mir-14;AAPU01010044.1/154796-154858\|1.7e-21" - - "mirBase_v16=dya-mir-14\|2.2e-30"	4740	5,441,245 – 5,441,352	+	12	120	90.32	-5.13	0.93	0.999049
3452	dm3.chr2R	5,441,245 – 5,441,352		4741	5,441,245 – 5,441,352	-	12	120	90.32	-3.20	0.96	0.997958
3455	dm3.chr2R	5,459,260 – 5,459,350	- - CDS="CDS;ID=CDS_FBgn0085436:8_631;Name=Not1-cds;Parent=FBtr0112673;parent_type=mRNA" - - - - -	4744	5,459,260 – 5,459,350	+	7	102	68.51	-2.10	0.38	0.921353
3457	dm3.chr2R	5,491,140 – 5,491,238	- - - - - - - -	4746	5,491,140 – 5,491,238	-	6	104	71.43	-1.97	0.44	0.918512
3459	dm3.chr2R	5,508,736 – 5,508,848	FBnoncoding="pre_miRNA;ID=FBtr0304171;Name=mir-307-as-RM;Parent=FBgn0262172;Alias=CR42879-RM;Dbxref=FlyBase_Annotation_IDs:CR42879-RM,miRBase:MI0011577" - - intron="intron;ID=intron_FBgn0033438:6_FBgn0033438:5;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" "Rfam_10.0=RF00844;mir-67;AAPU01010253.1/29382-29448\|3.0e-26" - - "mirBase_v16=dme-mir-307-as\|2.1e-58"	4748	5,508,736 – 5,508,848	+	14	131	83.39	-3.33	0.79	0.998843
3459	dm3.chr2R	5,508,736 – 5,508,848		4749	5,508,736 – 5,508,848	-	14	131	83.39	-5.30	0.86	0.999294
3463	dm3.chr2R	5,529,257 – 5,529,349	- - - intron="intron;ID=intron_FBgn0033438:6_FBgn0033438:5;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" - - - -	4755	5,529,257 – 5,529,349	+	11	119	86.98	-4.42	0.87	0.999291
3463	dm3.chr2R	5,529,257 – 5,529,349		4756	5,529,257 – 5,529,349	-	11	119	86.98	-2.85	0.83	0.993831
3464	dm3.chr2R	5,530,255 – 5,530,347	- - - intron="intron;ID=intron_FBgn0033438:6_FBgn0033438:5;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" - - - -	4757	5,530,255 – 5,530,347	-	9	114	71.66	-1.81	0.51	0.949741
3465	dm3.chr2R	5,549,588 – 5,549,689	- - - intron="intron;ID=intron_FBgn0033438:6_FBgn0033438:5;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" - - - -	4758	5,549,588 – 5,549,689	-	5	121	82.19	-2.37	0.80	0.981114
3467	dm3.chr2R	5,556,239 – 5,556,329	- - - intron="intron;ID=intron_FBgn0033438:8_FBgn0033438:7;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" - - - -	4760	5,556,239 – 5,556,329	+	7	111	64.76	-2.26	0.73	0.999177
3473	dm3.chr2R	5,613,253 – 5,613,351	- - - intron="intron;ID=intron_FBgn0259678:10_FBgn0259678:9;Name=CG42347-in;Parent=FBtr0299929,FBtr0299930;parent_type=mRNA" - - - -	4767	5,613,253 – 5,613,351	+	9	109	78.08	-2.42	0.48	0.940364
3473	dm3.chr2R	5,613,253 – 5,613,351		4768	5,613,253 – 5,613,351	-	9	109	78.08	-2.33	0.53	0.960796
3481	dm3.chr2R	5,677,040 – 5,677,132	- - - intron="intron;ID=intron_CG1688:2_CG1688:3;Name=CG1688-in;Parent=FBtr0088495;parent_type=mRNA" - - - -	4778	5,677,040 – 5,677,132	-	11	102	75.89	-1.20	0.79	0.947335
3482	dm3.chr2R	5,677,348 – 5,677,439	- - - intron="intron;ID=intron_CG1688:2_CG1688:3;Name=CG1688-in;Parent=FBtr0088495;parent_type=mRNA" - - - -	4779	5,677,348 – 5,677,439	+	8	102	86.02	-2.36	0.72	0.936435
3484	dm3.chr2R	5,685,674 – 5,685,776	- - - - - - - -	4781	5,685,674 – 5,685,776	+	4	108	80.95	-2.46	0.69	0.962673
3488	dm3.chr2R	5,715,311 – 5,715,409	- - - - - - - -	4785	5,715,311 – 5,715,409	+	4	114	63.17	-1.89	0.46	0.955661
3488	dm3.chr2R	5,715,311 – 5,715,409	- - - - - - - -	4786	5,715,311 – 5,715,409	-	4	114	63.17	-2.04	0.44	0.963071
3490	dm3.chr2R	5,753,029 – 5,753,087	- - - intron="intron;ID=intron_FBgn0011241:6_FBgn0011241:4;Name=cbx-in;Parent=FBtr0088452;parent_type=mRNA" - - - -	4788	5,753,029 – 5,753,087	-	3	58	95.40	-1.09	1.07	0.946387
3493	dm3.chr2R	5,788,988 – 5,789,133	- - - intron="intron;ID=intron_FBgn0033464:6_FBgn0033464:5;Name=CG1441-in;Parent=FBtr0088448;parent_type=mRNA" - - - -	4792	5,788,988 – 5,789,101	-	5	113	92.36	-2.56	0.80	0.939156
3497	dm3.chr2R	5,811,429 – 5,811,549	- - - intron="intron;ID=intron_FBgn0011656:13_FBgn0011656:12;Name=Mef2-in;Parent=FBtr0088446,FBtr0088443,FBtr0088444,FBtr0088445;parent_type=mRNA" - - - -	4798	5,811,429 – 5,811,549	-	5	120	93.49	-2.47	0.90	0.975795
3498	dm3.chr2R	5,815,257 – 5,815,349	- - - intron="intron;ID=intron_FBgn0011656:13_FBgn0011656:12;Name=Mef2-in;Parent=FBtr0088446,FBtr0088443,FBtr0088444,FBtr0088445;parent_type=mRNA" - - - -	4800	5,815,257 – 5,815,349	-	7	118	75.19	-2.44	0.51	0.958647
3504	dm3.chr2R	5,865,012 – 5,865,111	- - - - - - - -	4807	5,865,012 – 5,865,111	-	4	101	80.78	-2.66	0.75	0.989975
3505	dm3.chr2R	5,872,196 – 5,872,346	- - - - - - - -	4809	5,872,235 – 5,872,346	+	6	115	70.08	-1.75	0.45	0.911574
3506	dm3.chr2R	5,873,181 – 5,873,315	- - - - - - - -	4810	5,873,181 – 5,873,276	-	5	99	91.93	-2.80	0.78	0.962911
3507	dm3.chr2R	5,878,133 – 5,878,245	- - CDS="CDS;ID=CDS_FBgn0024923:6_499;Name=TER94-cds;Parent=FBtr0088391;parent_type=mRNA" - - - - -	4812	5,878,133 – 5,878,245	+	14	120	69.82	-1.13	0.52	0.932262
3509	dm3.chr2R	5,892,246 – 5,892,341	- - - intron="intron;ID=intron_FBgn0022382:10_FBgn0022382:9;Name=Pka-R2-in;Parent=FBtr0088437,FBtr0088438,FBtr0088439,FBtr0112901,FBtr0112902;parent_type=mRNA" - - - -	4814	5,892,246 – 5,892,341	+	7	113	61.87	-2.81	0.34	0.995839
3510	dm3.chr2R	5,896,232 – 5,896,293	- - - intron="intron;ID=intron_FBgn0022382:13_FBgn0022382:10;Name=Pka-R2-in;Parent=FBtr0112902;parent_type=mRNA" - - - -	4815	5,896,232 – 5,896,293	+	6	61	79.23	-2.59	0.63	0.990274
3515	dm3.chr2R	5,923,137 – 5,923,244	- - - - - - - -	4821	5,923,137 – 5,923,239	-	5	103	84.44	-2.31	0.74	0.947596
3516	dm3.chr2R	5,927,489 – 5,927,622	- - - intron="intron;ID=intron_CG18445:1_CG18445:2;Name=oys-in;Parent=FBtr0088434;parent_type=mRNA" - - - -	4823	5,927,489 – 5,927,622	-	5	133	90.38	-2.81	0.82	0.983044
3523	dm3.chr2R	5,988,388 – 5,988,478	- - - intron="intron;ID=intron_CG17870:1_CG17870:2;Name=14-3-3zeta-in;Parent=FBtr0088412;parent_type=mRNA" - - - -	4830	5,988,388 – 5,988,478	+	5	90	94.67	-4.05	0.91	0.998408
3523	dm3.chr2R	5,988,388 – 5,988,478		4831	5,988,388 – 5,988,478	-	5	90	94.67	-3.01	0.87	0.988258
3524	dm3.chr2R	5,989,365 – 5,989,532	- - - intron="intron;ID=intron_CG17870:29_CG17870:2;Name=14-3-3zeta-in;Parent=FBtr0088417;parent_type=mRNA" - - - -	4832	5,989,365 – 5,989,469	+	8	113	73.38	-3.09	0.28	0.932133
				4833	5,989,365 – 5,989,469	-	8	113	73.38	-2.46	0.40	0.943788
				4835	5,989,405 – 5,989,504	-	7	112	70.28	-2.14	0.56	0.989713
3529	dm3.chr2R	6,058,681 – 6,058,798	- - - - - - - -	4842	6,058,681 – 6,058,798	+	6	130	69.93	-2.13	0.48	0.963440
3534	dm3.chr2R	6,099,987 – 6,100,080	- - - - - - - -	4848	6,099,987 – 6,100,080	+	8	115	83.61	-2.92	0.52	0.933210
3545	dm3.chr2R	6,190,970 – 6,191,094	- - - intron="intron;ID=intron_FBgn0033504:28_FBgn0033504:31;Name=CAP-in;Parent=FBtr0088346;parent_type=mRNA" - - - -	4863	6,190,970 – 6,191,086	-	5	119	90.53	-2.80	0.79	0.976303
3549	dm3.chr2R	6,260,523 – 6,260,648	- - - - - - - -	4868	6,260,523 – 6,260,648	+	8	132	71.25	-2.68	0.46	0.995327
3552	dm3.chr2R	6,283,384 – 6,283,492	- - - - - - - -	4871	6,283,384 – 6,283,479	-	12	117	67.22	-1.34	0.53	0.959127
3554	dm3.chr2R	6,339,652 – 6,339,747	- - - - - - - -	4875	6,339,652 – 6,339,747	+	13	98	65.52	-0.75	0.51	0.900992
3560	dm3.chr2R	6,379,516 – 6,379,607	- - CDS="CDS;ID=CDS_FBgn0005630:7_661;Name=lola-cds;Parent=FBtr0089361;parent_type=mRNA" intron="intron;ID=intron_FBgn0005630:28_FBgn0005630:6;Name=lola-in;Parent=FBtr0089354;parent_type=mRNA" - - - -	4884	6,379,516 – 6,379,607	-	7	104	69.79	-1.54	0.50	0.935757
3563	dm3.chr2R	6,417,245 – 6,417,344	- - - intron="intron;ID=intron_FBgn0005630:28_FBgn0005630:26;Name=lola-in;Parent=FBtr0089356;parent_type=mRNA" - - - -	4887	6,417,245 – 6,417,344	-	12	111	73.65	-3.38	0.43	0.999027
3564	dm3.chr2R	6,424,252 – 6,424,359	- - - - "Rfam_10.0=RF01261;snR82;AAPP01018805.1/121345-121519\|4.1e-19" - - -	4888	6,424,252 – 6,424,350	-	12	120	68.16	-0.70	0.86	0.961557
3565	dm3.chr2R	6,424,470 – 6,424,550	- - - - "Rfam_10.0=RF01261;snR82;AAPP01018805.1/121161-121308\|6.7e-14" - - -	4891	6,424,470 – 6,424,550	-	11	89	71.50	-1.78	0.90	0.995058
3566	dm3.chr2R	6,425,216 – 6,425,266	- - - - - - - -	4892	6,425,216 – 6,425,266	+	6	62	69.57	-1.58	0.57	0.924768
3568	dm3.chr2R	6,434,527 – 6,434,629	- - - - - - - -	4894	6,434,527 – 6,434,629	+	5	103	96.69	-2.13	0.95	0.958682
3571	dm3.chr2R	6,462,662 – 6,462,821	- - - intron="intron;ID=intron_FBgn0004399:9_FBgn0004399:12;Name=psq-in;Parent=FBtr0088280;parent_type=mRNA" - - - -	4898	6,462,722 – 6,462,821	+	7	113	63.32	-1.94	0.55	0.997557
3572	dm3.chr2R	6,468,760 – 6,468,829	- - - intron="intron;ID=intron_FBgn0004399:9_FBgn0004399:12;Name=psq-in;Parent=FBtr0088280;parent_type=mRNA" - - - -	4900	6,468,760 – 6,468,829	-	4	69	96.61	-2.41	0.99	0.989152
3573	dm3.chr2R	6,472,545 – 6,472,608	- - - intron="intron;ID=intron_FBgn0004399:11_FBgn0004399:13;Name=psq-in;Parent=FBtr0100606;parent_type=mRNA" - - - -	4901	6,472,545 – 6,472,608	+	7	72	62.20	-2.03	0.31	0.929307
3574	dm3.chr2R	6,483,767 – 6,483,889	- - - intron="intron;ID=intron_FBgn0004399:11_FBgn0004399:13;Name=psq-in;Parent=FBtr0100606;parent_type=mRNA" - - - -	4905	6,483,795 – 6,483,889	-	6	94	82.41	-2.17	0.72	0.965250
3578	dm3.chr2R	6,508,208 – 6,508,311	- - - intron="intron;ID=intron_FBgn0033538:2_FBgn0033538:5;Name=CG11883-in;Parent=FBtr0088284,FBtr0088283;parent_type=mRNA" - - - -	4909	6,508,208 – 6,508,311	+	5	112	95.31	-1.53	1.00	0.937108
3579	dm3.chr2R	6,517,465 – 6,517,588	- - - intron="intron;ID=intron_FBgn0033538:3_FBgn0033538:4;Name=CG11883-in;Parent=FBtr0113063;parent_type=mRNA" - - - -	4910	6,517,465 – 6,517,588	+	3	149	56.85	-1.50	0.50	0.940439
3581	dm3.chr2R	6,541,765 – 6,541,815	- - - - - - - -	4914	6,541,765 – 6,541,815	-	4	50	95.33	-1.52	1.00	0.932660
3582	dm3.chr2R	6,542,307 – 6,542,409	- - - - - - - -	4915	6,542,307 – 6,542,409	+	10	112	77.28	-2.33	0.47	0.941412
3584	dm3.chr2R	6,559,667 – 6,559,795	- - - - - - - -	4920	6,559,699 – 6,559,795	+	6	108	72.05	-1.93	0.55	0.974861
3585	dm3.chr2R	6,561,579 – 6,561,642	- - - intron="intron;ID=intron_FBgn0024836:1_FBgn0024836:2;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4922	6,561,579 – 6,561,642	+	7	71	74.69	-1.38	0.70	0.940266
3586	dm3.chr2R	6,563,306 – 6,563,397	- - - intron="intron;ID=intron_FBgn0024836:1_FBgn0024836:2;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4924	6,563,306 – 6,563,397	-	8	95	69.17	-2.10	0.40	0.961706
3588	dm3.chr2R	6,567,834 – 6,567,926	- - - intron="intron;ID=intron_FBgn0024836:1_FBgn0024836:2;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4926	6,567,834 – 6,567,926	+	6	108	82.45	-2.53	0.66	0.964423
3595	dm3.chr2R	6,589,373 – 6,589,472	- - - intron="intron;ID=intron_FBgn0024836:2_FBgn0024836:4;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4934	6,589,373 – 6,589,472	+	5	100	98.09	-1.62	0.98	0.901688
3596	dm3.chr2R	6,604,916 – 6,605,050	- - - intron="intron;ID=intron_FBgn0024836:6_FBgn0024836:7;Name=stan-in;Parent=FBtr0304900;parent_type=mRNA" - - - -	4935	6,604,916 – 6,605,050	+	5	164	71.72	-3.09	0.53	0.997226
3596	dm3.chr2R	6,604,916 – 6,605,050		4936	6,604,916 – 6,605,050	-	5	164	71.72	-2.67	0.59	0.995041
3600	dm3.chr2R	6,635,800 – 6,635,901	- - - intron="intron;ID=intron_FBgn0053144:5_FBgn0053144:4;Name=CG33144-in;Parent=FBtr0088254,FBtr0302517;parent_type=mRNA" - - - -	4940	6,635,800 – 6,635,901	+	3	117	82.91	-2.94	0.79	0.991722
3601	dm3.chr2R	6,636,171 – 6,636,267	- - - intron="intron;ID=intron_FBgn0053144:5_FBgn0053144:4;Name=CG33144-in;Parent=FBtr0088254,FBtr0302517;parent_type=mRNA" - - - -	4941	6,636,171 – 6,636,267	+	6	113	80.09	-2.12	0.69	0.947737
3601	dm3.chr2R	6,636,171 – 6,636,267		4942	6,636,171 – 6,636,267	-	6	113	80.09	-2.15	0.62	0.902279
3605	dm3.chr2R	6,648,066 – 6,648,240	- - - intron="intron;ID=intron_FBgn0053144:8_FBgn0053144:7;Name=CG33144-in;Parent=FBtr0088254;parent_type=mRNA" - - - -	4946	6,648,066 – 6,648,240	+	3	188	87.52	-3.92	0.80	0.997920
3605	dm3.chr2R	6,648,066 – 6,648,240		4947	6,648,066 – 6,648,240	-	3	188	87.52	-3.43	0.81	0.995365
3612	dm3.chr2R	6,667,401 – 6,667,514	- - - intron="intron;ID=intron_FBgn0053144:8_FBgn0053144:7;Name=CG33144-in;Parent=FBtr0088254;parent_type=mRNA" - - - -	4955	6,667,401 – 6,667,514	-	5	121	74.21	-2.86	0.46	0.986721
3613	dm3.chr2R	6,672,934 – 6,673,037	- - - - - - - -	4956	6,672,934 – 6,673,037	+	7	103	70.26	-1.22	0.59	0.934521
3615	dm3.chr2R	6,683,181 – 6,683,294	- - - - - - - -	4959	6,683,181 – 6,683,294	-	7	113	76.67	-2.19	0.55	0.959384
3616	dm3.chr2R	6,696,038 – 6,696,134	- - - intron="intron;ID=intron_CG12340:1_CG12340:2;Name=wde-in;Parent=FBtr0088253;parent_type=mRNA" - - - -	4960	6,696,038 – 6,696,134	+	5	106	76.59	-2.01	0.68	0.969997
3617	dm3.chr2R	6,697,151 – 6,697,229	- - - - - - - -	4961	6,697,151 – 6,697,229	+	7	79	71.85	-2.60	0.30	0.905053
3630	dm3.chr2R	6,830,012 – 6,830,110	- - - - - - - -	4977	6,830,012 – 6,830,110	+	6	106	82.38	-2.88	0.68	0.992269
3634	dm3.chr2R	6,845,294 – 6,845,365	- - - - - - - -	4982	6,845,294 – 6,845,365	+	6	87	73.73	-2.10	0.57	0.958295
3636	dm3.chr2R	6,845,534 – 6,845,638	- - - - - - - -	4984	6,845,534 – 6,845,638	+	5	106	77.60	-2.12	0.68	0.970938
3640	dm3.chr2R	6,860,371 – 6,860,437	- - - - - - - -	4991	6,860,371 – 6,860,437	-	6	67	68.85	-1.26	0.61	0.975929
3644	dm3.chr2R	6,883,381 – 6,883,507	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	4996	6,883,405 – 6,883,507	+	6	119	75.99	-2.06	0.59	0.930996
3648	dm3.chr2R	6,895,963 – 6,896,058	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5000	6,895,963 – 6,896,058	-	7	101	91.83	-2.43	0.80	0.933685
3651	dm3.chr2R	6,918,352 – 6,918,442	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5003	6,918,352 – 6,918,442	+	8	109	69.61	-1.63	0.47	0.906729
3652	dm3.chr2R	6,926,857 – 6,926,971	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5004	6,926,857 – 6,926,958	+	5	108	85.15	-3.47	0.86	0.998345
				5006	6,926,879 – 6,926,971	+	4	102	88.97	-3.72	0.89	0.998348
				5007	6,926,879 – 6,926,971	-	4	102	88.97	-3.29	0.98	0.998343
3653	dm3.chr2R	6,930,327 – 6,930,425	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5008	6,930,327 – 6,930,425	+	6	106	82.65	-1.91	0.77	0.923968
3654	dm3.chr2R	6,931,184 – 6,931,281	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5010	6,931,184 – 6,931,281	-	5	109	89.18	-2.87	0.74	0.965940
3655	dm3.chr2R	6,932,195 – 6,932,342	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5012	6,932,235 – 6,932,342	+	6	108	88.69	-2.11	0.81	0.918768
3656	dm3.chr2R	6,933,109 – 6,933,221	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5014	6,933,109 – 6,933,221	+	5	112	78.43	-2.29	0.59	0.939260
3656	dm3.chr2R	6,933,109 – 6,933,221		5015	6,933,111 – 6,933,221	+	5	110	78.41	-2.45	0.59	0.964798
3659	dm3.chr2R	6,949,068 – 6,949,173	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5018	6,949,068 – 6,949,173	+	6	118	75.76	-1.70	0.75	0.972175
3660	dm3.chr2R	6,951,792 – 6,951,884	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5019	6,951,792 – 6,951,884	-	5	95	88.18	-2.94	0.71	0.974588
3665	dm3.chr2R	6,970,335 – 6,970,456	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5024	6,970,335 – 6,970,425	+	4	96	84.64	-2.89	0.85	0.994399
3665	dm3.chr2R	6,970,335 – 6,970,456		5025	6,970,335 – 6,970,425	-	4	96	84.64	-2.30	0.80	0.958553
3666	dm3.chr2R	6,972,597 – 6,972,685	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5027	6,972,597 – 6,972,685	+	4	90	85.77	-3.18	0.62	0.970897
3666	dm3.chr2R	6,972,597 – 6,972,685		5028	6,972,597 – 6,972,685	-	4	90	85.77	-2.46	0.73	0.927335
3671	dm3.chr2R	6,988,161 – 6,988,227	- - - intron="intron;ID=intron_FBgn0040765:5_FBgn0040765:4;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5033	6,988,161 – 6,988,227	+	5	70	78.61	-2.42	0.71	0.983781
3671	dm3.chr2R	6,988,161 – 6,988,227		5034	6,988,161 – 6,988,227	-	5	70	78.61	-2.33	0.98	0.995158
3673	dm3.chr2R	7,018,704 – 7,018,806	- - - - - - - -	5036	7,018,704 – 7,018,806	-	7	109	69.05	-1.85	0.59	0.992828
3679	dm3.chr2R	7,044,679 – 7,044,781	- - - - - - - -	5042	7,044,679 – 7,044,781	-	3	103	80.58	-2.60	0.67	0.954963
3681	dm3.chr2R	7,059,732 – 7,059,843	- - - - - - - -	5044	7,059,732 – 7,059,843	+	8	117	70.48	-3.00	0.42	0.998170
3681	dm3.chr2R	7,059,732 – 7,059,843	- - - - - - - -	5045	7,059,732 – 7,059,843	-	8	117	70.48	-3.08	0.44	0.998920
3683	dm3.chr2R	7,066,893 – 7,066,954	- - - intron="intron;ID=intron_CG7734:11_CG7734:10;Name=shn-in;Parent=FBtr0088101;parent_type=mRNA" - - - -	5047	7,066,893 – 7,066,954	+	7	70	72.06	-2.42	0.71	0.998530
3683	dm3.chr2R	7,066,893 – 7,066,954		5048	7,066,893 – 7,066,954	-	7	70	72.06	-2.60	0.41	0.980965
3686	dm3.chr2R	7,081,152 – 7,081,245	- - - intron="intron;ID=intron_CG7734:10_CG7734:2;Name=shn-in;Parent=FBtr0088098,FBtr0088101;parent_type=mRNA" - - - -	5051	7,081,152 – 7,081,245	+	4	120	75.56	-2.70	0.73	0.996780
3686	dm3.chr2R	7,081,152 – 7,081,245		5052	7,081,152 – 7,081,245	-	4	120	75.56	-2.00	0.74	0.979465
3687	dm3.chr2R	7,083,392 – 7,083,493	- - - intron="intron;ID=intron_CG7734:10_CG7734:2;Name=shn-in;Parent=FBtr0088098,FBtr0088101;parent_type=mRNA" - - - -	5053	7,083,392 – 7,083,493	+	4	105	67.78	-1.41	0.74	0.978855
3688	dm3.chr2R	7,118,775 – 7,118,869	- - - intron="intron;ID=intron_FBgn0050021:10_FBgn0050021:9;Name=metro-in;Parent=FBtr0088196,FBtr0114569,FBtr0114570;parent_type=mRNA" - - - -	5054	7,118,775 – 7,118,869	+	6	94	70.85	-2.45	0.46	0.993658
3688	dm3.chr2R	7,118,775 – 7,118,869		5055	7,118,775 – 7,118,869	-	6	94	70.85	-1.72	0.45	0.909553
3689	dm3.chr2R	7,125,741 – 7,125,850	- - CDS="CDS;ID=CDS_FBgn0033591:1_628;Name=CG13216-cds;Parent=FBtr0088193;parent_type=mRNA" - - - - -	5056	7,125,741 – 7,125,850	+	5	111	73.86	-1.61	0.61	0.911078
3690	dm3.chr2R	7,130,572 – 7,130,712	- - - - - - - -	5057	7,130,572 – 7,130,712	+	3	155	84.52	-2.75	0.69	0.947527
3690	dm3.chr2R	7,130,572 – 7,130,712	- - - - - - - -	5058	7,130,572 – 7,130,712	-	3	155	84.52	-2.36	0.75	0.918679
3691	dm3.chr2R	7,132,843 – 7,132,933	- - - - - - - -	5059	7,132,843 – 7,132,933	-	6	100	75.28	-1.86	0.58	0.927155
3692	dm3.chr2R	7,133,453 – 7,133,510	- - - - - - - -	5060	7,133,453 – 7,133,510	+	7	60	69.71	-2.01	0.48	0.980079
3698	dm3.chr2R	7,205,013 – 7,205,110	- - - - - - - -	5066	7,205,013 – 7,205,110	-	7	108	69.28	-2.66	0.46	0.997746
3699	dm3.chr2R	7,209,949 – 7,210,055	- - - - - - - -	5067	7,209,949 – 7,210,055	+	5	106	96.04	-2.56	0.86	0.946653
3699	dm3.chr2R	7,209,949 – 7,210,055	- - - - - - - -	5068	7,209,949 – 7,210,055	-	5	106	96.04	-2.08	0.91	0.918794
3700	dm3.chr2R	7,245,048 – 7,245,156	FBnoncoding="tRNA;ID=FBtr0088156;Name=tRNA:SeC-RA;Parent=FBgn0011987;Dbxref=FlyBase_Annotation_IDs:CR30024-RA;score_text=Weakly" tRNAscann="SeCe_chr2R_trna85" - - "Rfam_10.0=RF00005;tRNA;ABKP02018690.1/6262-6344\|6.9e-24" - - "mirBase_v16=sme-mir-749\|1.1e-10"	5069	7,245,048 – 7,245,156	+	12	112	75.13	-1.35	0.68	0.980771
3700	dm3.chr2R	7,245,048 – 7,245,156		5070	7,245,048 – 7,245,156	-	12	112	75.13	-0.66	0.78	0.904939
3703	dm3.chr2R	7,260,942 – 7,261,043	- - - - - - - -	5074	7,260,942 – 7,261,043	+	9	113	73.55	-2.12	0.42	0.915449
3706	dm3.chr2R	7,281,823 – 7,281,929	FBnoncoding="tRNA;ID=FBtr0088131;Name=tRNA:CR30257-RA;Parent=FBgn0050257;Alias=CR30257-RA;Dbxref=FlyBase_Annotation_IDs:CR30257-RA;score_text=Weakly" tRNAscann="Thr_chr2R_trna14" - intron="intron;ID=intron_CG30023:1_CG30023:2;Name=sprt-in;Parent=FBtr0088146;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAJJ01000381.1/59414-59485\|4.9e-34" - - -	5078	7,281,823 – 7,281,929	-	13	119	78.08	-1.78	0.80	0.989286
3707	dm3.chr2R	7,287,274 – 7,287,394	FBnoncoding="tRNA;ID=FBtr0088145;Name=tRNA:CR30506-RA;Parent=FBgn0050506;Alias=CR30506-RA;Dbxref=FlyBase_Annotation_IDs:CR30506-RA;score_text=Weakly" tRNAscann="Thr_chr2R_trna84" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000381.1/59414-59485\|5.6e-34" - - -	5079	7,287,274 – 7,287,394	+	13	138	73.65	-1.49	0.67	0.986900
3707	dm3.chr2R	7,287,274 – 7,287,394		5080	7,287,274 – 7,287,394	-	13	138	73.65	-1.12	0.65	0.946792
3708	dm3.chr2R	7,292,175 – 7,292,291	- tRNAscann="Thr_chr2R_trna15" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000381.1/59414-59485\|5.4e-34" - - -	5081	7,292,175 – 7,292,291	+	13	120	75.23	-1.06	0.82	0.973623
3708	dm3.chr2R	7,292,175 – 7,292,291		5082	7,292,175 – 7,292,291	-	13	120	75.23	-1.52	0.76	0.992131
3709	dm3.chr2R	7,292,718 – 7,292,808	- tRNAscann="Thr_chr2R_trna83" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000381.1/59414-59485\|4.0e-34" - - -	5083	7,292,718 – 7,292,808	+	13	98	82.60	-2.43	0.99	0.996061
3709	dm3.chr2R	7,292,718 – 7,292,808		5084	7,292,718 – 7,292,808	-	13	98	82.60	-1.85	0.98	0.988768
3711	dm3.chr2R	7,305,717 – 7,305,776	- - - - - - - -	5086	7,305,717 – 7,305,776	-	5	61	61.49	-1.60	0.53	0.993339
3712	dm3.chr2R	7,307,565 – 7,307,707	- - - - - - - -	5088	7,307,605 – 7,307,707	-	4	102	70.59	-1.73	0.59	0.938715
3714	dm3.chr2R	7,340,518 – 7,340,588	- - - intron="intron;ID=intron_CG7776:1_CG7776:2;Name=E(Pc)-in;Parent=FBtr0088140;parent_type=mRNA" - - - -	5090	7,340,518 – 7,340,588	+	5	70	97.14	-2.37	1.00	0.989737
3715	dm3.chr2R	7,356,792 – 7,356,892	- - - - - - - -	5092	7,356,792 – 7,356,892	+	10	118	82.89	-2.46	0.56	0.901323
3715	dm3.chr2R	7,356,792 – 7,356,892	- - - - - - - -	5093	7,356,792 – 7,356,892	-	10	118	82.89	-3.14	0.76	0.997582
3717	dm3.chr2R	7,367,565 – 7,367,655	- - - intron="intron;ID=intron_CG17835:6_CG17835:3;Name=inv-in;Parent=FBtr0088070,FBtr0088069;parent_type=mRNA" - - - -	5095	7,367,565 – 7,367,655	+	5	91	81.43	-2.32	0.60	0.915327
3718	dm3.chr2R	7,370,096 – 7,370,153	- - - intron="intron;ID=intron_CG17835:6_CG17835:3;Name=inv-in;Parent=FBtr0088070,FBtr0088069;parent_type=mRNA" - - - -	5096	7,370,096 – 7,370,153	-	5	57	92.63	-2.42	0.88	0.966973
3719	dm3.chr2R	7,379,587 – 7,379,699	- - - intron="intron;ID=intron_CG17835:6_CG17835:3;Name=inv-in;Parent=FBtr0088070,FBtr0088069;parent_type=mRNA" - - - -	5097	7,379,587 – 7,379,677	-	9	109	74.12	-1.84	0.58	0.961879
3720	dm3.chr2R	7,381,667 – 7,381,760	- - - intron="intron;ID=intron_CG17835:6_CG17835:3;Name=inv-in;Parent=FBtr0088070,FBtr0088069;parent_type=mRNA" - - - -	5099	7,381,667 – 7,381,760	+	12	120	85.75	-2.77	0.66	0.975809
3720	dm3.chr2R	7,381,667 – 7,381,760		5100	7,381,667 – 7,381,760	-	12	120	85.75	-2.24	0.68	0.900136
3722	dm3.chr2R	7,399,545 – 7,399,664	- - - - - - - -	5102	7,399,545 – 7,399,635	-	12	117	75.66	-2.09	0.63	0.985596
3727	dm3.chr2R	7,439,327 – 7,439,435	- - - - - - - -	5108	7,439,327 – 7,439,435	+	12	114	78.49	-2.87	0.52	0.996875
3728	dm3.chr2R	7,442,281 – 7,442,361	- - - - - - - -	5110	7,442,281 – 7,442,361	-	7	81	77.35	-2.21	0.62	0.987133
3732	dm3.chr2R	7,486,376 – 7,486,478	- - - intron="intron;ID=intron_FBgn0033636:21_FBgn0033636:20;Name=tou-in;Parent=FBtr0088091,FBtr0113066;parent_type=mRNA" - - - -	5114	7,486,376 – 7,486,478	+	7	108	71.92	-2.44	0.58	0.995751
3732	dm3.chr2R	7,486,376 – 7,486,478		5115	7,486,376 – 7,486,478	-	7	108	71.92	-3.36	0.45	0.998545
3733	dm3.chr2R	7,490,511 – 7,490,564	- - - intron="intron;ID=intron_FBgn0033636:21_FBgn0033636:20;Name=tou-in;Parent=FBtr0088091,FBtr0113066;parent_type=mRNA" - - - -	5116	7,490,511 – 7,490,564	+	5	60	63.46	-1.20	0.73	0.987659
3734	dm3.chr2R	7,502,784 – 7,502,900	- - - intron="intron;ID=intron_FBgn0033636:21_FBgn0033636:20;Name=tou-in;Parent=FBtr0088091,FBtr0113066;parent_type=mRNA" - - - -	5117	7,502,784 – 7,502,900	+	6	117	80.28	-2.04	0.65	0.940334
3735	dm3.chr2R	7,503,756 – 7,503,846	- - - - - - - -	5118	7,503,756 – 7,503,846	-	5	90	93.21	-1.59	0.98	0.937693
3736	dm3.chr2R	7,511,678 – 7,511,784	- - CDS="CDS;ID=CDS_FBgn0033638:7_686;Name=CG9005-cds;Parent=FBtr0306029;parent_type=mRNA" - - - - -	5119	7,511,678 – 7,511,784	+	13	120	78.89	-2.05	0.53	0.925263
3736	dm3.chr2R	7,511,678 – 7,511,784		5120	7,511,678 – 7,511,784	-	13	120	78.89	-2.39	0.54	0.978810
3740	dm3.chr2R	7,540,151 – 7,540,249	FBnoncoding="tRNA;ID=FBtr0088071;Name=tRNA:M2:48Ba-RA;Parent=FBgn0011915;Dbxref=FlyBase_Annotation_IDs:CR30255-RA;score_text=Weakly" tRNAscann="Met_chr2R_trna16" - - "Rfam_10.0=RF00005;tRNA;AAWU01021761.1/90707-90779\|9.6e-23" - - -	5124	7,540,151 – 7,540,249	+	11	108	81.14	-1.13	0.93	0.933969
3740	dm3.chr2R	7,540,151 – 7,540,249		5125	7,540,151 – 7,540,249	-	11	108	81.14	-1.48	0.93	0.972572
3741	dm3.chr2R	7,548,027 – 7,548,187	FBnoncoding="tRNA;ID=FBtr0088086;Name=tRNA:M2:48Bb-RA;Parent=FBgn0011916;Dbxref=FlyBase_Annotation_IDs:CR32844-RA;score_text=Weakly" tRNAscann="Met_chr2R_trna81" - - "Rfam_10.0=RF00005;tRNA;AAWU01021761.1/90707-90779\|1.7e-22" - - -	5127	7,548,027 – 7,548,187	-	10	170	68.60	-0.92	0.59	0.960337
3749	dm3.chr2R	7,613,486 – 7,613,581	- - CDS="CDS;ID=CDS_FBgn0033649:5_578;Name=pyr-cds;Parent=FBtr0113070;parent_type=mRNA" - - - - -	5136	7,613,486 – 7,613,581	+	6	115	72.46	-2.40	0.43	0.922301
3750	dm3.chr2R	7,619,427 – 7,619,518	- - - - - - - -	5138	7,619,427 – 7,619,518	+	11	118	63.42	-2.03	0.39	0.977542
3751	dm3.chr2R	7,626,717 – 7,626,811	- - - - - - - -	5139	7,626,717 – 7,626,811	-	3	94	90.44	-2.28	0.87	0.943608
3752	dm3.chr2R	7,631,561 – 7,631,611	- - - - - - - -	5141	7,631,561 – 7,631,611	-	3	56	86.42	-3.35	1.02	0.998762
3755	dm3.chr2R	7,645,372 – 7,645,475	- - - - - - - -	5144	7,645,372 – 7,645,466	-	6	98	90.49	-2.61	0.82	0.973585
3757	dm3.chr2R	7,650,256 – 7,650,353	- - - - - - - -	5147	7,650,256 – 7,650,353	-	5	105	90.42	-2.52	0.76	0.920598
3758	dm3.chr2R	7,654,062 – 7,654,118	- - - - - - - -	5148	7,654,062 – 7,654,118	+	5	61	90.52	-2.66	0.86	0.983650
3762	dm3.chr2R	7,683,295 – 7,683,377	- - - intron="intron;ID=intron_FBgn0033652:3_FBgn0033652:4;Name=ths-in;Parent=FBtr0088030,FBtr0304622,FBtr0304623;parent_type=mRNA" - - - -	5153	7,683,295 – 7,683,377	+	11	109	86.96	-2.13	0.88	0.974245
3762	dm3.chr2R	7,683,295 – 7,683,377		5154	7,683,295 – 7,683,377	-	11	109	86.96	-1.61	0.92	0.935223
3764	dm3.chr2R	7,684,810 – 7,684,968	- - - intron="intron;ID=intron_FBgn0033652:3_FBgn0033652:4;Name=ths-in;Parent=FBtr0088030,FBtr0304622,FBtr0304623;parent_type=mRNA" - - - -	5156	7,684,810 – 7,684,900	+	7	97	74.35	-2.69	0.35	0.923150
3764	dm3.chr2R	7,684,810 – 7,684,968		5158	7,684,865 – 7,684,968	-	7	117	69.93	-1.12	0.63	0.919724
3770	dm3.chr2R	7,758,461 – 7,758,609	- - CDS="CDS;ID=CDS_FBgn0033661:7_554;Name=CG13185-cds;Parent=FBtr0113071;parent_type=mRNA" - - - - -	5167	7,758,499 – 7,758,609	-	6	110	88.67	-2.41	0.74	0.915100
3772	dm3.chr2R	7,814,258 – 7,814,350	- - - - - - - -	5169	7,814,258 – 7,814,350	-	7	105	67.98	-1.37	0.63	0.985549
3784	dm3.chr2R	7,905,444 – 7,905,521	- - - intron="intron;ID=intron_CG8967:1_CG8967:2;Name=otk-in;Parent=FBtr0088028;parent_type=mRNA" - - - -	5182	7,905,444 – 7,905,521	+	12	79	76.54	-1.57	0.59	0.948444
3785	dm3.chr2R	7,921,379 – 7,921,475	- - - - - - - -	5183	7,921,379 – 7,921,475	+	7	98	58.78	-2.19	0.30	0.985151
3787	dm3.chr2R	7,936,587 – 7,936,725	- - - - - - - -	5186	7,936,587 – 7,936,693	-	11	116	68.96	-1.90	0.44	0.980189
				5187	7,936,621 – 7,936,725	+	12	120	68.79	-2.25	0.39	0.979259
				5188	7,936,621 – 7,936,725	-	12	120	68.79	-1.79	0.44	0.959020
3791	dm3.chr2R	7,950,833 – 7,950,924	- - - - - - - -	5193	7,950,833 – 7,950,924	+	5	92	86.79	-2.29	0.75	0.908542
3793	dm3.chr2R	7,953,746 – 7,953,857	- - - intron="intron;ID=intron_CG8888:3_CG8888:4;Name=CG8888-in;Parent=FBtr0088022;parent_type=mRNA" - - - -	5195	7,953,746 – 7,953,857	+	3	120	67.60	-2.66	0.60	0.996345
3793	dm3.chr2R	7,953,746 – 7,953,857		5196	7,953,746 – 7,953,857	-	3	120	67.60	-2.08	0.56	0.964386
3794	dm3.chr2R	7,956,344 – 7,956,446	- - - intron="intron;ID=intron_CG8888:2_CG8888:3;Name=CG8888-in;Parent=FBtr0088022;parent_type=mRNA" - - - -	5197	7,956,344 – 7,956,446	+	5	102	85.99	-2.16	0.76	0.900664
3795	dm3.chr2R	7,957,863 – 7,958,021	- - - intron="intron;ID=intron_CG8888:2_CG8888:3;Name=CG8888-in;Parent=FBtr0088022;parent_type=mRNA" - - - -	5199	7,957,903 – 7,958,021	+	5	118	95.41	-2.99	0.74	0.920089
3799	dm3.chr2R	7,970,463 – 7,970,552	- - - - - - - -	5203	7,970,463 – 7,970,552	+	4	89	66.67	-3.20	0.51	0.999315
3799	dm3.chr2R	7,970,463 – 7,970,552	- - - - - - - -	5204	7,970,463 – 7,970,552	-	4	89	66.67	-2.72	0.63	0.999128
3804	dm3.chr2R	8,024,956 – 8,025,051	- - - - - - - -	5209	8,024,956 – 8,025,051	-	4	99	58.95	-1.42	0.47	0.947541
3805	dm3.chr2R	8,046,370 – 8,046,463	FBnoncoding="pre_miRNA;ID=FBtr0304446;Name=mir-988-RM;Parent=FBgn0262300;Alias=CR43007-RM;Dbxref=FlyBase_Annotation_IDs:CR43007-RM,miRBase:MI0005847" - - intron="intron;ID=intron_FBgn0033688:6_FBgn0033688:5;Name=Prp8-in;Parent=FBtr0088016;parent_type=mRNA" - - - "mirBase_v16=dsi-mir-988\|5.7e-46"	5210	8,046,370 – 8,046,463	-	13	114	75.06	-2.59	0.83	0.998582
3808	dm3.chr2R	8,057,642 – 8,057,747	FBnoncoding="pre_miRNA;ID=FBtr0304375;Name=mir-281-2-RM;Parent=FBgn0262423;Alias=CR42975-RM;Dbxref=FlyBase_Annotation_IDs:CR42975-RM,miRBase:MI0000370" - - - "Rfam_10.0=RF00967;mir-281;AAJJ01001668.1/5737-5811\|3.4e-07" - - "mirBase_v16=dse-mir-281-2\|1.7e-46"	5213	8,057,642 – 8,057,747	+	15	110	78.20	-2.81	0.83	0.999031
3808	dm3.chr2R	8,057,642 – 8,057,747		5214	8,057,642 – 8,057,747	-	15	110	78.20	-4.18	0.87	0.999489
3809	dm3.chr2R	8,057,876 – 8,057,971	FBnoncoding="pre_miRNA;ID=FBtr0304285;Name=mir-281-1-RM;Parent=FBgn0262394;Alias=CR42931-RM;Dbxref=FlyBase_Annotation_IDs:CR42931-RM,miRBase:MI0000366" - - - - - - "mirBase_v16=dme-mir-281-1\|1.5e-46"	5215	8,057,876 – 8,057,971	+	14	117	81.59	-4.61	0.79	0.999646
3809	dm3.chr2R	8,057,876 – 8,057,971		5216	8,057,876 – 8,057,971	-	14	117	81.59	-6.02	0.85	0.998771
3812	dm3.chr2R	8,091,616 – 8,091,712	- - - - - - - -	5219	8,091,616 – 8,091,712	+	7	104	82.12	-2.09	0.70	0.917975
3814	dm3.chr2R	8,110,669 – 8,110,764	- - - - - - - -	5222	8,110,669 – 8,110,764	+	11	113	77.17	-1.71	0.65	0.939975
3814	dm3.chr2R	8,110,669 – 8,110,764	- - - - - - - -	5223	8,110,669 – 8,110,764	-	11	113	77.17	-2.16	0.58	0.970165
3816	dm3.chr2R	8,112,418 – 8,112,554	- - CDS="CDS;ID=CDS_FBgn0033702:1_559;Name=CG8854-cds;Parent=FBtr0114562;parent_type=mRNA" - - - - -	5225	8,112,418 – 8,112,523	+	12	118	79.36	-1.99	0.55	0.907758
3817	dm3.chr2R	8,130,371 – 8,130,506	- - - - - - - -	5230	8,130,411 – 8,130,506	+	5	125	68.33	-2.03	0.48	0.934678
3818	dm3.chr2R	8,135,530 – 8,135,668	- - - - - - - -	5232	8,135,530 – 8,135,637	-	5	107	82.39	-1.20	0.98	0.926419
3820	dm3.chr2R	8,150,498 – 8,150,671	- - - intron="intron;ID=intron_FBgn0000253:2_FBgn0000253:4;Name=Cam-in;Parent=FBtr0088001,FBtr0304963;parent_type=mRNA" - - - -	5238	8,150,566 – 8,150,671	-	3	105	96.83	-2.56	0.97	0.988371
3825	dm3.chr2R	8,171,312 – 8,171,405	- - - intron="intron;ID=intron_FBgn0261611:1_FBgn0261611:4;Name=CG42700-in;Parent=FBtr0302922;parent_type=mRNA" - - - -	5244	8,171,312 – 8,171,405	-	6	107	83.19	-1.58	0.87	0.912414
3830	dm3.chr2R	8,200,914 – 8,201,048	- - CDS="CDS;ID=CDS_FBgn0050203:6_574;Name=CG30203-cds;Parent=FBtr0273303;parent_type=mRNA" - - - - -	5250	8,200,914 – 8,201,048	-	6	159	70.36	-2.64	0.44	0.995115
3832	dm3.chr2R	8,221,739 – 8,221,809	FBnoncoding="tRNA;ID=FBtr0087962;Name=tRNA:CR30250-RA;Parent=FBgn0050250;Alias=CR30250-RA;Dbxref=FlyBase_Annotation_IDs:CR30250-RA;score_text=Weakly" tRNAscann="His_chr2R_trna79" - - "Rfam_10.0=RF00005;tRNA;AANI01014800.1/19824-19895\|4.5e-33" - - -	5252	8,221,739 – 8,221,809	+	14	73	96.40	-2.39	0.89	0.956252
3833	dm3.chr2R	8,223,920 – 8,224,000	FBnoncoding="tRNA;ID=FBtr0087900;Name=tRNA:H:48F-RA;Parent=FBgn0011878;Dbxref=FlyBase_Annotation_IDs:CR30252-RA;score_text=Weakly" tRNAscann="His_chr2R_trna17" - - "Rfam_10.0=RF00005;tRNA;AANI01014800.1/19824-19895\|3.4e-34" - - -	5254	8,223,920 – 8,224,000	+	14	106	91.30	-1.98	0.92	0.959749
3833	dm3.chr2R	8,223,920 – 8,224,000		5255	8,223,920 – 8,224,000	-	14	106	91.30	-3.23	0.91	0.997135
3834	dm3.chr2R	8,224,225 – 8,224,314	- tRNAscann="Undet_chr2R_trna18" - - "Rfam_10.0=RF00005;tRNA;AE013599.4/8224238-8224309\|3.9e-34" - - -	5257	8,224,225 – 8,224,314	-	13	89	90.17	-2.05	0.94	0.982290
3835	dm3.chr2R	8,225,243 – 8,225,353	- - - - - - - -	5259	8,225,243 – 8,225,353	-	5	119	78.44	-1.97	0.72	0.956099
3838	dm3.chr2R	8,269,013 – 8,269,119	- - - - - - - -	5262	8,269,013 – 8,269,118	+	7	120	74.25	-3.00	0.45	0.989665
3838	dm3.chr2R	8,269,013 – 8,269,119	- - - - - - - -	5264	8,269,013 – 8,269,119	+	7	120	74.19	-2.75	0.45	0.978305
3841	dm3.chr2R	8,287,373 – 8,287,502	- - - - - - - -	5268	8,287,373 – 8,287,502	+	7	139	66.98	-1.33	0.50	0.953873
3844	dm3.chr2R	8,309,796 – 8,309,891	- - - intron="intron;ID=intron_FBgn0033733:7_FBgn0033733:6;Name=CG8834-in;Parent=FBtr0087954,FBtr0113073;parent_type=mRNA" - - - -	5271	8,309,796 – 8,309,891	-	11	109	60.72	-0.32	0.57	0.947975
3845	dm3.chr2R	8,322,866 – 8,322,979	- - - - - - - -	5272	8,322,866 – 8,322,979	-	7	116	77.79	-1.79	0.70	0.969500
3847	dm3.chr2R	8,326,012 – 8,326,157	- - - intron="intron;ID=intron_FBgn0033739:2_FBgn0033739:3;Name=Dyb-in;Parent=FBtr0087929,FBtr0100298,FBtr0113074,FBtr0305076;parent_type=mRNA" - - - -	5274	8,326,012 – 8,326,157	-	6	149	73.53	-1.54	0.60	0.929401
3857	dm3.chr2R	8,379,344 – 8,379,456	- - - - - - - -	5285	8,379,344 – 8,379,456	+	6	113	80.35	-1.72	0.76	0.936036
3863	dm3.chr2R	8,412,874 – 8,412,990	- - - - - - - -	5293	8,412,874 – 8,412,988	-	6	119	77.62	-2.85	0.56	0.991821
3863	dm3.chr2R	8,412,874 – 8,412,990	- - - - - - - -	5295	8,412,876 – 8,412,990	-	6	120	78.47	-2.87	0.64	0.995243
3864	dm3.chr2R	8,427,066 – 8,427,168	- - - intron="intron;ID=intron_CG8581:1_CG8581:2;Name=fra-in;Parent=FBtr0087821,FBtr0087822;parent_type=mRNA" - - - -	5296	8,427,066 – 8,427,168	-	3	102	73.44	-2.71	0.58	0.983545
3871	dm3.chr2R	8,499,892 – 8,500,039	- - - - - - - -	5307	8,499,892 – 8,499,996	-	4	105	77.94	-2.44	0.69	0.983306
				5308	8,499,928 – 8,500,035	-	4	108	78.14	-3.13	0.74	0.997952
				5310	8,499,933 – 8,500,039	-	4	107	77.78	-3.08	0.70	0.997389
3875	dm3.chr2R	8,609,196 – 8,609,296	- - - intron="intron;ID=intron_FBgn0261545:1_FBgn0261545:2;Name=CG42663-in;Parent=FBtr0302644,FBtr0302645;parent_type=mRNA" - - - -	5315	8,609,196 – 8,609,296	+	4	100	79.00	-2.05	0.66	0.909477
3877	dm3.chr2R	8,616,982 – 8,617,063	- - - intron="intron;ID=intron_FBgn0261545:2_FBgn0261545:3;Name=CG42663-in;Parent=FBtr0302644,FBtr0302645;parent_type=mRNA" - - - -	5318	8,616,982 – 8,617,063	-	7	92	58.76	-1.63	0.38	0.976965
3887	dm3.chr2R	8,670,236 – 8,670,290	- - - intron="intron;ID=intron_CG17579:1_CG17579:2;Name=sca-in;Parent=FBtr0087855,FBtr0087856;parent_type=mRNA" - - - -	5328	8,670,236 – 8,670,290	+	5	54	96.67	-1.96	1.00	0.975376
3888	dm3.chr2R	8,679,108 – 8,679,202	- - - intron="intron;ID=intron_CG17579:2_CG17579:3;Name=sca-in;Parent=FBtr0087855,FBtr0087856;parent_type=mRNA" - - - -	5330	8,679,108 – 8,679,202	+	4	94	56.23	-1.00	0.51	0.956257
3888	dm3.chr2R	8,679,108 – 8,679,202		5331	8,679,108 – 8,679,202	-	4	94	56.23	-1.07	0.45	0.908451
3889	dm3.chr2R	8,691,606 – 8,691,666	- - - - - - - -	5332	8,691,606 – 8,691,666	-	12	77	70.27	-1.09	0.68	0.979029
3891	dm3.chr2R	8,707,420 – 8,707,522	- - - - - - - -	5334	8,707,420 – 8,707,522	+	4	103	63.81	-1.41	0.53	0.900005
3897	dm3.chr2R	8,783,334 – 8,783,432	- - - intron="intron;ID=intron_CG3830:4_CG3830:5;Name=vg-in;Parent=FBtr0087785;parent_type=mRNA" - - - -	5341	8,783,334 – 8,783,432	-	11	116	73.64	-2.47	0.56	0.996149
3899	dm3.chr2R	8,795,770 – 8,795,875	- - - - - - - -	5343	8,795,770 – 8,795,875	-	6	116	72.28	-1.50	0.57	0.904068
3900	dm3.chr2R	8,796,246 – 8,796,343	- - - - - - - -	5344	8,796,246 – 8,796,343	+	6	97	74.49	-1.82	0.66	0.972743
3902	dm3.chr2R	8,801,912 – 8,801,962	- - - - - - - -	5347	8,801,912 – 8,801,962	-	5	50	98.40	-2.85	0.98	0.993711
3903	dm3.chr2R	8,806,537 – 8,806,639	- - CDS="CDS;ID=CDS_CG3845:2_554;Name=NAT1-cds;Parent=FBtr0100672;parent_type=mRNA" - - - - -	5348	8,806,537 – 8,806,639	+	13	112	76.52	-2.69	0.73	0.999028
3904	dm3.chr2R	8,808,733 – 8,808,849	- - CDS="CDS;ID=CDS_CG3845:3_554;Name=NAT1-cds;Parent=FBtr0100672;parent_type=mRNA" - - - - -	5351	8,808,733 – 8,808,849	-	13	119	82.96	-3.61	0.60	0.998878
3905	dm3.chr2R	8,812,741 – 8,812,824	- - - - - - - -	5352	8,812,741 – 8,812,824	-	4	96	76.83	-2.02	0.61	0.906477
3907	dm3.chr2R	8,894,181 – 8,894,297	- - - - - - - -	5354	8,894,181 – 8,894,280	+	11	119	77.84	-2.37	0.65	0.985942
3908	dm3.chr2R	8,897,678 – 8,897,788	- - - - - - - -	5356	8,897,678 – 8,897,788	+	5	120	87.02	-2.36	0.73	0.907244
3909	dm3.chr2R	8,905,884 – 8,905,991	- - - - - - - -	5357	8,905,884 – 8,905,991	+	8	110	74.01	-2.96	0.47	0.996773
3909	dm3.chr2R	8,905,884 – 8,905,991	- - - - - - - -	5358	8,905,884 – 8,905,991	-	8	110	74.01	-2.90	0.45	0.994835
3910	dm3.chr2R	8,916,264 – 8,916,354	- - - - - - - -	5359	8,916,264 – 8,916,354	+	5	90	93.45	-2.05	0.98	0.979855
3911	dm3.chr2R	8,929,084 – 8,929,203	- - - - - - - -	5360	8,929,084 – 8,929,203	-	6	120	74.04	-2.32	0.47	0.964815
3917	dm3.chr2R	8,953,207 – 8,953,299	- - - intron="intron;ID=intron_FBgn0033791:5_FBgn0033791:4;Name=Drl-2-in;Parent=FBtr0087794;parent_type=mRNA" - - - -	5368	8,953,207 – 8,953,299	-	5	100	64.24	-2.78	0.35	0.993519
3918	dm3.chr2R	8,960,057 – 8,960,151	- - CDS="CDS;ID=CDS_FBgn0033791:10_586;Name=Drl-2-cds;Parent=FBtr0087794;parent_type=mRNA" - - - - -	5369	8,960,057 – 8,960,151	+	12	119	72.63	-1.80	0.46	0.920815
3921	dm3.chr2R	9,007,777 – 9,007,828	- - - intron="intron;ID=intron_CG13325:1_CG13325:2;Name=CG13325-in;Parent=FBtr0087722;parent_type=mRNA" - - - -	5373	9,007,777 – 9,007,828	-	9	51	88.45	-2.64	0.77	0.975896
3929	dm3.chr2R	9,112,740 – 9,112,863	- - - intron="intron;ID=intron_CG4654:9_CG4654:10;Name=Dp-in;Parent=FBtr0087740;parent_type=mRNA" - - - -	5383	9,112,754 – 9,112,863	-	6	120	67.10	-1.54	0.53	0.964260
3931	dm3.chr2R	9,157,281 – 9,157,371	- - - intron="intron;ID=intron_FBgn0052843:3_FBgn0052843:2;Name=Dh31-R1-in;Parent=FBtr0087755;parent_type=mRNA" - - - -	5385	9,157,281 – 9,157,371	-	4	90	74.30	-2.45	0.57	0.965532
3935	dm3.chr2R	9,179,113 – 9,179,221	- - - intron="intron;ID=intron_FBgn0052843:11_FBgn0052843:10;Name=Dh31-R1-in;Parent=FBtr0087755;parent_type=mRNA" - - - -	5390	9,179,113 – 9,179,221	-	7	118	70.74	-1.95	0.42	0.930396
3938	dm3.chr2R	9,189,965 – 9,190,074	- - - - - - - -	5394	9,189,965 – 9,190,074	+	5	119	64.31	-1.52	0.51	0.965643
3943	dm3.chr2R	9,196,924 – 9,197,018	- - - - - - - -	5400	9,196,924 – 9,197,018	-	10	107	77.61	-1.99	0.62	0.974499
3947	dm3.chr2R	9,216,905 – 9,217,000	FBnoncoding="pre_miRNA;ID=FBtr0304272;Name=mir-184-RM;Parent=FBgn0262391;Alias=CR42925-RM;Dbxref=FlyBase_Annotation_IDs:CR42925-RM,miRBase:MI0000354" - - - "Rfam_10.0=RF00657;mir-184;AAPU01010071.1/6418-6500\|2.4e-26" "Noncode_2.0=n178704_u177802_NW_045834_miRNA_Anopheles\|1.3e-12" "unique_Noncode_2.0=u177802_miRNA_Anopheles\|1.1e-12" "mirBase_v16=dme-mir-184\|6.1e-49"	5404	9,216,905 – 9,217,000	+	14	98	88.75	-4.68	0.83	0.999430
3947	dm3.chr2R	9,216,905 – 9,217,000		5405	9,216,905 – 9,217,000	-	14	98	88.75	-4.33	0.78	0.999353
3950	dm3.chr2R	9,233,475 – 9,233,569	- - - - - - - -	5408	9,233,475 – 9,233,569	+	3	98	58.62	-2.66	0.33	0.966153
3951	dm3.chr2R	9,247,096 – 9,247,189	- - - - - - - -	5409	9,247,096 – 9,247,189	+	6	118	68.04	-1.42	0.59	0.937981
3952	dm3.chr2R	9,249,337 – 9,249,438	- - - - - - - -	5411	9,249,337 – 9,249,438	-	8	101	86.19	-1.84	0.86	0.944867
3958	dm3.chr2R	9,315,192 – 9,315,305	- - - intron="intron;ID=intron_FBgn0259221:17_FBgn0259221:16;Name=CG42321-in;Parent=FBtr0299756,FBtr0299763,FBtr0299764;parent_type=mRNA" - - - -	5418	9,315,192 – 9,315,305	+	9	118	79.01	-3.63	0.52	0.998772
3961	dm3.chr2R	9,318,789 – 9,318,862	FBnoncoding="tRNA;ID=FBtr0087659;Name=tRNA:I:49Fc-RA;Parent=FBgn0011883;Dbxref=FlyBase_Annotation_IDs:CR30521-RA;score_text=Weakly" tRNAscann="Ile_chr2R_trna20" - - "Rfam_10.0=RF00005;tRNA;ABJB010861939.1/779-852\|1.7e-26" - - "mirBase_v16=cre-MIR916\|4.6e-15"	5422	9,318,789 – 9,318,862	-	14	80	89.99	-2.11	0.85	0.959121
3962	dm3.chr2R	9,319,278 – 9,319,379	FBnoncoding="tRNA;ID=FBtr0087660;Name=tRNA:I:49Fd-RA;Parent=FBgn0011884;Dbxref=FlyBase_Annotation_IDs:CR30246-RA;score_text=Weakly" tRNAscann="Ile_chr2R_trna21" - - "Rfam_10.0=RF00005;tRNA;ABJB010861939.1/779-852\|6.6e-27" - - "mirBase_v16=cre-MIR916\|6.8e-15"	5423	9,319,278 – 9,319,379	+	12	112	77.35	-1.11	0.89	0.948295
3962	dm3.chr2R	9,319,278 – 9,319,379		5424	9,319,278 – 9,319,379	-	12	112	77.35	-1.68	0.89	0.988250
3963	dm3.chr2R	9,325,368 – 9,325,445	FBnoncoding="tRNA;ID=FBtr0087665;Name=tRNA:CR30509-RA;Parent=FBgn0050509;Alias=CR30509-RA;Dbxref=FlyBase_Annotation_IDs:CR30509-RA;score_text=Weakly" tRNAscann="Ile_chr2R_trna24" - - "Rfam_10.0=RF00005;tRNA;ABJB010861939.1/779-852\|4.7e-27" - - "mirBase_v16=cre-MIR916\|4.9e-15"	5425	9,325,368 – 9,325,445	+	14	89	83.82	-1.49	0.90	0.953386
3963	dm3.chr2R	9,325,368 – 9,325,445		5426	9,325,368 – 9,325,445	-	14	89	83.82	-2.11	0.91	0.990894
3968	dm3.chr2R	9,359,686 – 9,359,740	- - - intron="intron;ID=intron_FBgn0000119:6_FBgn0000119:5;Name=arr-in;Parent=FBtr0087702;parent_type=mRNA" - - - -	5431	9,359,686 – 9,359,740	+	4	54	79.94	-1.88	0.85	0.968615
3970	dm3.chr2R	9,364,049 – 9,364,140	- - - intron="intron;ID=intron_FBgn0000119:6_FBgn0000119:5;Name=arr-in;Parent=FBtr0087702;parent_type=mRNA" - - - -	5434	9,364,049 – 9,364,140	-	6	99	90.53	-3.62	0.87	0.997915
3974	dm3.chr2R	9,370,228 – 9,370,319	- - - intron="intron;ID=intron_FBgn0000119:7_FBgn0000119:6;Name=arr-in;Parent=FBtr0087702;parent_type=mRNA" - - - -	5438	9,370,228 – 9,370,319	+	5	105	87.70	-2.35	0.85	0.974021
3974	dm3.chr2R	9,370,228 – 9,370,319		5439	9,370,228 – 9,370,319	-	5	105	87.70	-2.89	0.86	0.993763
3976	dm3.chr2R	9,379,153 – 9,379,227	- - CDS="CDS;ID=CDS_FBgn0033844:8_686;Name=bbc-cds;Parent=FBtr0087700,FBtr0087699,FBtr0305993;parent_type=mRNA" - - - - -	5441	9,379,153 – 9,379,227	+	11	74	85.87	-3.09	0.51	0.964367
3977	dm3.chr2R	9,383,003 – 9,383,079	- - - - - - - -	5442	9,383,003 – 9,383,079	-	6	84	94.49	-2.56	0.93	0.985935
3980	dm3.chr2R	9,412,570 – 9,412,628	- - - - - - - -	5445	9,412,570 – 9,412,628	-	6	67	74.36	-1.56	0.69	0.931040
3981	dm3.chr2R	9,412,832 – 9,412,926	- - - - - - - -	5446	9,412,832 – 9,412,926	+	12	115	56.95	-1.16	0.46	0.984962
3983	dm3.chr2R	9,423,540 – 9,423,627	FBnoncoding="tRNA;ID=FBtr0087688;Name=tRNA:K2:50C-RA;Parent=FBgn0011896;Dbxref=FlyBase_Annotation_IDs:CR30507-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna75" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|9.0e-29" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|1.9e-17" "unique_Noncode_2.0=u201439_mRNAlike\|1.7e-17" -	5448	9,423,540 – 9,423,627	+	13	93	70.29	-2.89	0.87	0.999453
3983	dm3.chr2R	9,423,540 – 9,423,627		5449	9,423,540 – 9,423,627	-	13	93	70.29	-1.89	0.92	0.996947
3984	dm3.chr2R	9,427,455 – 9,427,530	- - - - - - - -	5450	9,427,455 – 9,427,530	-	7	79	58.68	-1.21	0.48	0.984351
3987	dm3.chr2R	9,464,323 – 9,464,430	- - - - - - - -	5454	9,464,323 – 9,464,430	+	11	120	83.66	-3.91	0.87	0.999233
3987	dm3.chr2R	9,464,323 – 9,464,430	- - - - - - - -	5455	9,464,323 – 9,464,430	-	11	120	83.66	-3.36	0.77	0.998425
3988	dm3.chr2R	9,467,474 – 9,467,597	- - - - - - - -	5457	9,467,502 – 9,467,597	+	8	111	69.57	-1.07	0.54	0.901573
3991	dm3.chr2R	9,504,347 – 9,504,460	- - - - - - - -	5460	9,504,347 – 9,504,460	+	5	114	75.64	-2.88	0.60	0.995798
3992	dm3.chr2R	9,523,054 – 9,523,159	- - - intron="intron;ID=intron_FBgn0000633:1_FBgn0000633:2;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5462	9,523,054 – 9,523,159	-	6	106	77.78	-1.84	0.61	0.910305
3994	dm3.chr2R	9,536,725 – 9,536,832	- - - intron="intron;ID=intron_FBgn0000633:2_FBgn0000633:3;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5464	9,536,725 – 9,536,816	+	13	106	76.44	-1.13	0.81	0.954596
3994	dm3.chr2R	9,536,725 – 9,536,832		5465	9,536,739 – 9,536,832	+	13	116	81.05	-2.07	0.86	0.987845
3996	dm3.chr2R	9,543,198 – 9,543,296	- - - intron="intron;ID=intron_FBgn0000633:3_FBgn0000633:4;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5467	9,543,198 – 9,543,296	+	11	119	81.17	-2.48	0.70	0.984056
4000	dm3.chr2R	9,558,694 – 9,558,797	- - CDS="CDS;ID=CDS_CG18368:1_502;Name=CG18368-cds;Parent=FBtr0087627;parent_type=mRNA" intron="intron;ID=intron_FBgn0000633:3_FBgn0000633:4;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5473	9,558,694 – 9,558,797	+	6	103	77.28	-4.65	0.71	0.999834
4000	dm3.chr2R	9,558,694 – 9,558,797		5474	9,558,694 – 9,558,797	-	6	103	77.28	-3.35	0.71	0.999393
4003	dm3.chr2R	9,612,523 – 9,612,589	- - - intron="intron;ID=intron_FBgn0000633:9_FBgn0000633:10;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5477	9,612,523 – 9,612,589	+	3	66	66.15	-2.67	0.52	0.993936
4005	dm3.chr2R	9,637,127 – 9,637,219	- - - - - - - -	5479	9,637,127 – 9,637,219	+	5	92	79.69	-2.30	0.61	0.938137
4006	dm3.chr2R	9,639,091 – 9,639,141	- - - - - - - -	5480	9,639,091 – 9,639,141	+	5	50	94.60	-1.69	0.95	0.908678
4012	dm3.chr2R	9,663,767 – 9,663,872	- - CDS="CDS;ID=CDS_CG13338:4_503;Name=Cpr50Ca-cds;Parent=FBtr0087629;parent_type=mRNA" - - - - -	5487	9,663,767 – 9,663,872	+	6	105	82.53	-2.65	0.75	0.991494
4014	dm3.chr2R	9,684,823 – 9,684,924	- - - intron="intron;ID=intron_CG6305:2_CG6305:3;Name=Cpr50Cb-in;Parent=FBtr0087630;parent_type=mRNA" - - - -	5489	9,684,823 – 9,684,924	+	6	107	64.89	-2.73	0.44	0.999101
4014	dm3.chr2R	9,684,823 – 9,684,924		5490	9,684,823 – 9,684,924	-	6	107	64.89	-1.54	0.41	0.918271
4015	dm3.chr2R	9,693,033 – 9,693,133	- - - - - - - -	5491	9,693,033 – 9,693,133	-	5	113	58.56	-1.94	0.36	0.966165
4018	dm3.chr2R	9,719,611 – 9,719,703	- - - - - - - -	5495	9,719,611 – 9,719,703	+	5	92	92.59	-2.53	0.95	0.990451
4019	dm3.chr2R	9,740,290 – 9,740,418	- - - - - - - -	5496	9,740,290 – 9,740,418	+	8	128	63.97	-3.10	0.33	0.998851
4019	dm3.chr2R	9,740,290 – 9,740,418	- - - - - - - -	5497	9,740,290 – 9,740,418	-	8	128	63.97	-3.91	0.25	0.999334
4021	dm3.chr2R	9,767,846 – 9,767,950	- - CDS="CDS;ID=CDS_FBgn0013733:19_661;Name=shot-cds;Parent=FBtr0304851,FBtr0304852,FBtr0304853;parent_type=mRNA" - - - - -	5499	9,767,846 – 9,767,950	-	14	116	83.68	-2.18	0.60	0.912230
4024	dm3.chr2R	9,785,978 – 9,786,049	- - - - - - - -	5502	9,785,978 – 9,786,049	-	6	72	69.85	-2.05	0.53	0.989295
4031	dm3.chr2R	9,828,305 – 9,828,424	- - - intron="intron;ID=intron_FBgn0013733:44_FBgn0013733:43;Name=shot-in;Parent=FBtr0087617,FBtr0087616,FBtr0273222,FBtr0273223,FBtr0273224,FBtr0301591,FBtr0304849,FBtr0304850;parent_type=mRNA" - - - -	5511	9,828,305 – 9,828,358	-	5	55	94.24	-3.16	1.05	0.998718
				5512	9,828,358 – 9,828,424	+	8	79	81.49	-2.39	0.62	0.943667
				5513	9,828,358 – 9,828,424	-	8	79	81.49	-3.27	0.66	0.997096
4033	dm3.chr2R	9,838,337 – 9,838,428	- - CDS="CDS;ID=CDS_FBgn0026611:7_682;Name=AGO1-cds;Parent=FBtr0087613;parent_type=mRNA" - - - - -	5515	9,838,337 – 9,838,428	+	12	91	88.53	-2.08	0.77	0.906045
4034	dm3.chr2R	9,842,173 – 9,842,313	- - CDS="CDS;ID=CDS_FBgn0026611:11_678;Name=AGO1-cds;Parent=FBtr0087612,FBtr0305592;parent_type=mRNA" intron="intron;ID=intron_CG33155:1_CG33155:2;Name=CG33155-in;Parent=FBtr0100451;parent_type=mRNA" - - - -	5516	9,842,173 – 9,842,313	+	12	150	76.32	-3.38	0.39	0.995648
4034	dm3.chr2R	9,842,173 – 9,842,313		5517	9,842,173 – 9,842,313	-	12	150	76.32	-3.72	0.44	0.999138
4035	dm3.chr2R	9,842,983 – 9,843,136	- - CDS="CDS;ID=CDS_CG33155:3_498;Name=CG33155-cds;Parent=FBtr0100451,FBtr0100452;parent_type=mRNA" - - - - -	5518	9,842,983 – 9,843,103	+	13	120	83.78	-2.17	0.68	0.961714
				5519	9,843,023 – 9,843,136	+	12	120	73.12	-2.11	0.45	0.965003
				5520	9,843,023 – 9,843,136	-	12	120	73.12	-2.24	0.47	0.984129
4036	dm3.chr2R	9,861,036 – 9,861,126	- - - - - - - -	5521	9,861,036 – 9,861,126	-	9	99	72.07	-3.38	0.64	0.999820
4038	dm3.chr2R	9,873,208 – 9,873,339	- - CDS="CDS;ID=CDS_FBgn0020620:1_628;Name=RN-tre-cds;Parent=FBtr0087603,FBtr0302380;parent_type=mRNA" - - - - -	5523	9,873,208 – 9,873,299	+	9	109	72.34	-1.92	0.57	0.976914
4038	dm3.chr2R	9,873,208 – 9,873,339		5524	9,873,208 – 9,873,299	-	9	109	72.34	-1.81	0.69	0.989270
4040	dm3.chr2R	9,893,230 – 9,893,324	- - - intron="intron;ID=intron_CG8118:8_CG8118:2;Name=mam-in;Parent=FBtr0087596;parent_type=mRNA" - - - -	5527	9,893,230 – 9,893,324	+	7	94	72.76	-2.20	0.62	0.996678
4040	dm3.chr2R	9,893,230 – 9,893,324		5528	9,893,230 – 9,893,324	-	7	94	72.76	-1.38	0.59	0.936796
4042	dm3.chr2R	9,899,845 – 9,899,942	- - - intron="intron;ID=intron_CG8118:2_CG8118:3;Name=mam-in;Parent=FBtr0087596,FBtr0087597;parent_type=mRNA" - - - -	5530	9,899,845 – 9,899,942	+	6	101	70.95	-1.40	0.69	0.968748
4043	dm3.chr2R	9,902,256 – 9,902,418	- - - intron="intron;ID=intron_CG8118:2_CG8118:3;Name=mam-in;Parent=FBtr0087596,FBtr0087597;parent_type=mRNA" - - - -	5534	9,902,284 – 9,902,385	+	5	112	71.66	-2.18	0.54	0.975943
				5535	9,902,284 – 9,902,385	-	5	112	71.66	-2.35	0.53	0.984509
				5536	9,902,310 – 9,902,418	+	5	125	65.77	-1.92	0.44	0.950747
				5537	9,902,310 – 9,902,418	-	5	125	65.77	-1.80	0.47	0.955341
4047	dm3.chr2R	9,920,333 – 9,920,463	- - - intron="intron;ID=intron_CG8118:9_CG8118:10;Name=mam-in;Parent=FBtr0087598;parent_type=mRNA" - - - -	5542	9,920,333 – 9,920,453	-	5	120	80.79	-2.04	0.90	0.987193
4047	dm3.chr2R	9,920,333 – 9,920,463		5543	9,920,347 – 9,920,463	-	7	120	75.83	-1.28	0.84	0.948416
4048	dm3.chr2R	9,949,396 – 9,949,486	- - - - - - - -	5544	9,949,396 – 9,949,486	+	10	100	60.64	-1.83	0.52	0.999000
4048	dm3.chr2R	9,949,396 – 9,949,486	- - - - - - - -	5545	9,949,396 – 9,949,486	-	10	100	60.64	-2.20	0.67	0.999842
4049	dm3.chr2R	9,950,340 – 9,950,397	- - CDS="CDS;ID=CDS_FBgn0040752:2_664;Name=Prosap-cds;Parent=FBtr0087601;parent_type=mRNA" - - - - -	5546	9,950,340 – 9,950,397	+	5	57	92.46	-2.24	0.85	0.925353
4053	dm3.chr2R	9,997,627 – 9,997,721	- - - intron="intron;ID=intron_FBgn0040752:12_FBgn0040752:11;Name=Prosap-in;Parent=FBtr0087601,FBtr0304956;parent_type=mRNA" - - - -	5552	9,997,627 – 9,997,721	+	6	108	73.09	-1.64	0.69	0.965695
4054	dm3.chr2R	10,000,136 – 10,000,254	- - - intron="intron;ID=intron_FBgn0040752:12_FBgn0040752:11;Name=Prosap-in;Parent=FBtr0087601,FBtr0304956;parent_type=mRNA" - - - -	5553	10,000,136 – 10,000,230	+	11	109	62.05	-1.11	0.45	0.971546
4054	dm3.chr2R	10,000,136 – 10,000,254		5554	10,000,161 – 10,000,254	+	10	118	69.37	-1.77	0.46	0.942090
4058	dm3.chr2R	10,022,869 – 10,022,925	- - - intron="intron;ID=intron_FBgn0040752:13_FBgn0040752:12;Name=Prosap-in;Parent=FBtr0087601,FBtr0304956;parent_type=mRNA" - - - -	5558	10,022,869 – 10,022,925	+	5	56	96.43	-2.02	0.95	0.946677
4060	dm3.chr2R	10,062,291 – 10,062,394	- - - intron="intron;ID=intron_FBgn0000289:7_FBgn0000289:8;Name=cg-in;Parent=FBtr0087528;parent_type=mRNA" - - - -	5561	10,062,291 – 10,062,394	+	6	104	92.32	-2.52	0.83	0.959241
4060	dm3.chr2R	10,062,291 – 10,062,394		5562	10,062,291 – 10,062,394	-	6	104	92.32	-3.16	0.81	0.990145
4064	dm3.chr2R	10,097,838 – 10,098,003	- - - intron="intron;ID=intron_CG8404:1_CG8404:2;Name=Sox15-in;Parent=FBtr0087576;parent_type=mRNA" - - - -	5568	10,097,877 – 10,097,980	+	6	103	85.55	-3.71	0.69	0.998257
				5569	10,097,877 – 10,097,980	-	6	103	85.55	-2.86	0.79	0.993858
				5570	10,097,906 – 10,098,003	+	6	98	75.60	-3.77	0.63	0.999686
				5571	10,097,906 – 10,098,003	-	6	98	75.60	-2.11	0.65	0.984655
4065	dm3.chr2R	10,103,276 – 10,103,375	FBnoncoding="pre_miRNA;ID=FBtr0304327;Name=mir-308-RM;Parent=FBgn0262407;Alias=CR42951-RM;Dbxref=FlyBase_Annotation_IDs:CR42951-RM,miRBase:MI0000419" - - intron="intron;ID=intron_CG8415:2_CG8415:3;Name=RpS23-in;Parent=FBtr0087575;parent_type=mRNA" "Rfam_10.0=RF00743;mir-308;AE013599.4/10103307-10103369\|1.1e-28" - - "mirBase_v16=dme-mir-308\|2.0e-30"	5572	10,103,276 – 10,103,375	+	13	106	72.37	-2.09	0.43	0.987597
4065	dm3.chr2R	10,103,276 – 10,103,375		5573	10,103,276 – 10,103,375	-	13	106	72.37	-3.64	0.62	0.999945
4070	dm3.chr2R	10,162,610 – 10,162,709	- - - - - - - -	5578	10,162,610 – 10,162,709	+	10	111	77.05	-2.09	0.59	0.974534
4070	dm3.chr2R	10,162,610 – 10,162,709	- - - - - - - -	5579	10,162,610 – 10,162,709	-	10	111	77.05	-2.82	0.43	0.979101
4073	dm3.chr2R	10,207,555 – 10,207,717	- - - intron="intron;ID=intron_FBgn0085408:2_FBgn0085408:3;Name=Shroom-in;Parent=FBtr0112614;parent_type=mRNA" - - - -	5582	10,207,555 – 10,207,717	+	5	176	76.73	-2.18	0.57	0.938747
4073	dm3.chr2R	10,207,555 – 10,207,717		5583	10,207,555 – 10,207,717	-	5	176	76.73	-2.16	0.55	0.915558
4077	dm3.chr2R	10,239,308 – 10,239,367	- - - - - - - -	5587	10,239,308 – 10,239,367	-	6	66	72.27	-1.20	0.73	0.915054
4078	dm3.chr2R	10,245,768 – 10,245,938	- - - - - - - -	5588	10,245,768 – 10,245,870	+	9	106	65.76	-1.47	0.47	0.974627
				5589	10,245,768 – 10,245,870	-	9	106	65.76	-1.40	0.60	0.994526
				5590	10,245,797 – 10,245,909	+	10	115	66.11	-0.88	0.49	0.901038
				5592	10,245,833 – 10,245,938	+	11	113	66.74	-1.62	0.45	0.986832
				5593	10,245,833 – 10,245,938	-	11	113	66.74	-2.04	0.51	0.998744
4079	dm3.chr2R	10,246,178 – 10,246,281	- - - - - - - -	5594	10,246,178 – 10,246,281	-	10	113	50.59	-3.76	-0.00	0.994838
4080	dm3.chr2R	10,248,056 – 10,248,160	- - - - - - - -	5596	10,248,056 – 10,248,160	-	8	115	59.67	-3.28	0.19	0.993458
4081	dm3.chr2R	10,250,521 – 10,250,579	- - - - - - - -	5597	10,250,521 – 10,250,579	+	7	69	74.07	-2.60	0.48	0.982117
4081	dm3.chr2R	10,250,521 – 10,250,579	- - - - - - - -	5598	10,250,521 – 10,250,579	-	7	69	74.07	-2.55	0.49	0.981782
4086	dm3.chr2R	10,318,095 – 10,318,185	- - - intron="intron;ID=intron_CG10108:1_CG10108:2;Name=phyl-in;Parent=FBtr0087516;parent_type=mRNA" - - - -	5604	10,318,095 – 10,318,185	-	6	106	74.22	-4.72	0.39	0.999619
4087	dm3.chr2R	10,327,658 – 10,327,801	- - - intron="intron;ID=intron_FBgn0261613:1_FBgn0261613:2;Name=Oaz-in;Parent=FBtr0302927;parent_type=mRNA" - - - -	5605	10,327,658 – 10,327,801	-	7	145	88.72	-2.57	0.86	0.989206
4088	dm3.chr2R	10,329,213 – 10,329,303	- - - intron="intron;ID=intron_FBgn0261613:1_FBgn0261613:2;Name=Oaz-in;Parent=FBtr0302927;parent_type=mRNA" - - - -	5606	10,329,213 – 10,329,303	+	5	93	82.63	-2.69	0.75	0.986263
4091	dm3.chr2R	10,355,281 – 10,355,346	- - - - - - - -	5610	10,355,281 – 10,355,346	-	4	65	52.56	-0.95	0.64	0.994847
4096	dm3.chr2R	10,399,158 – 10,399,248	- - - - - - - -	5618	10,399,158 – 10,399,248	+	9	102	79.70	-2.21	0.76	0.990704
4096	dm3.chr2R	10,399,158 – 10,399,248	- - - - - - - -	5619	10,399,158 – 10,399,248	-	9	102	79.70	-2.75	0.61	0.993974
4097	dm3.chr2R	10,408,496 – 10,408,627	- - - - - - - -	5622	10,408,531 – 10,408,627	-	12	114	74.63	-1.19	0.74	0.927735
4099	dm3.chr2R	10,426,682 – 10,426,735	- - - intron="intron;ID=intron_CG10117:1_CG10117:2;Name=ttv-in;Parent=FBtr0087495;parent_type=mRNA" - - - -	5624	10,426,682 – 10,426,735	+	9	61	75.40	-1.75	0.61	0.956344
4101	dm3.chr2R	10,430,339 – 10,430,413	- - - intron="intron;ID=intron_CG10117:1_CG10117:2;Name=ttv-in;Parent=FBtr0087495;parent_type=mRNA" - - - -	5626	10,430,339 – 10,430,413	+	5	74	91.01	-2.13	0.91	0.965321
4107	dm3.chr2R	10,466,901 – 10,466,985	- - - - - - - -	5633	10,466,901 – 10,466,985	+	7	84	76.85	-2.93	0.48	0.989625
4109	dm3.chr2R	10,469,442 – 10,469,534	- - - - - - - -	5635	10,469,442 – 10,469,534	+	8	113	62.08	-1.75	0.38	0.919618
4113	dm3.chr2R	10,546,077 – 10,546,148	- - CDS="CDS;ID=CDS_CG10143:1_529;Name=Adgf-E-cds;Parent=FBtr0087482;parent_type=mRNA" - - - - -	5640	10,546,077 – 10,546,148	+	7	71	61.23	-0.93	0.60	0.992086
4113	dm3.chr2R	10,546,077 – 10,546,148		5641	10,546,077 – 10,546,148	-	7	71	61.23	-1.34	0.56	0.996978
4114	dm3.chr2R	10,555,457 – 10,555,512	- - - - - - - -	5642	10,555,457 – 10,555,512	+	11	55	95.17	-2.24	0.91	0.960201
4114	dm3.chr2R	10,555,457 – 10,555,512	- - - - - - - -	5643	10,555,457 – 10,555,512	-	11	55	95.17	-1.44	0.99	0.918443
4116	dm3.chr2R	10,570,809 – 10,570,902	- - - intron="intron;ID=intron_CG10145:3_CG10145:4;Name=mspo-in;Parent=FBtr0087477;parent_type=mRNA" - - - -	5645	10,570,809 – 10,570,902	+	6	93	85.24	-1.94	0.93	0.978443
4116	dm3.chr2R	10,570,809 – 10,570,902		5646	10,570,809 – 10,570,902	-	6	93	85.24	-2.37	0.87	0.987058
4118	dm3.chr2R	10,584,970 – 10,585,064	- - - intron="intron;ID=intron_CG10145:1_CG10145:2;Name=mspo-in;Parent=FBtr0087477;parent_type=mRNA" - - - -	5648	10,584,970 – 10,585,064	+	10	107	76.15	-2.50	0.54	0.993733
4118	dm3.chr2R	10,584,970 – 10,585,064		5649	10,584,970 – 10,585,064	-	10	107	76.15	-1.13	0.75	0.927489
4121	dm3.chr2R	10,620,495 – 10,620,595	- - - - - - - -	5654	10,620,495 – 10,620,595	+	7	118	78.56	-2.00	0.59	0.912619
4127	dm3.chr2R	10,673,793 – 10,673,927	- - - intron="intron;ID=intron_FBgn0001319:11_FBgn0001319:10;Name=kn-in;Parent=FBtr0087465,FBtr0112809,FBtr0112810,FBtr0301400;parent_type=mRNA" - - - -	5663	10,673,793 – 10,673,889	+	8	113	63.98	-2.41	0.37	0.986228
4127	dm3.chr2R	10,673,793 – 10,673,927		5664	10,673,793 – 10,673,889	-	8	113	63.98	-1.14	0.53	0.930240
4132	dm3.chr2R	10,704,334 – 10,704,425	- - - - - - - -	5670	10,704,334 – 10,704,425	+	11	113	78.52	-2.19	0.51	0.905800
4136	dm3.chr2R	10,735,621 – 10,735,700	- - - intron="intron;ID=intron_CG10209:1_CG10209:2;Name=CG10209-in;Parent=FBtr0087462;parent_type=mRNA" - - - -	5674	10,735,621 – 10,735,700	+	6	90	73.24	-2.89	0.44	0.992093
4136	dm3.chr2R	10,735,621 – 10,735,700		5675	10,735,621 – 10,735,700	-	6	90	73.24	-2.45	0.39	0.920372
4139	dm3.chr2R	10,749,680 – 10,749,743	- - - - - - - -	5678	10,749,680 – 10,749,743	-	10	70	70.44	-1.25	0.55	0.925575
4141	dm3.chr2R	10,771,626 – 10,771,764	- - - - - - - -	5680	10,771,626 – 10,771,764	+	4	141	75.52	-2.87	0.46	0.959093
4142	dm3.chr2R	10,791,086 – 10,791,225	- - CDS="CDS;ID=CDS_FBgn0027596:8_621;Name=CG10249-cds;Parent=FBtr0303758;parent_type=mRNA" intron="intron;ID=intron_FBgn0027596:8_FBgn0027596:7;Name=CG10249-in;Parent=FBtr0303758;parent_type=mRNA" - - - -	5681	10,791,086 – 10,791,191	+	12	108	66.95	-1.38	0.51	0.990252
4142	dm3.chr2R	10,791,086 – 10,791,225		5682	10,791,086 – 10,791,191	-	12	108	66.95	-0.89	0.50	0.934164
4150	dm3.chr2R	10,842,519 – 10,842,575	- - - - - - - -	5692	10,842,519 – 10,842,575	+	11	56	96.95	-2.28	1.00	0.988580
4151	dm3.chr2R	10,843,814 – 10,843,921	- - - - - - - -	5693	10,843,814 – 10,843,921	-	5	127	69.63	-1.88	0.53	0.942203
4152	dm3.chr2R	10,854,991 – 10,855,041	- - - intron="intron;ID=intron_CG12424:8_CG12424:2;Name=CG12424-in;Parent=FBtr0087411;parent_type=mRNA" - - - -	5694	10,854,991 – 10,855,041	+	7	61	64.73	-1.01	0.75	0.968655
4152	dm3.chr2R	10,854,991 – 10,855,041		5695	10,854,991 – 10,855,041	-	7	61	64.73	-1.22	0.62	0.959925
4153	dm3.chr2R	10,855,154 – 10,855,259	- - - intron="intron;ID=intron_CG12424:8_CG12424:2;Name=CG12424-in;Parent=FBtr0087411;parent_type=mRNA" - - - -	5696	10,855,154 – 10,855,259	+	5	106	89.25	-2.17	0.86	0.943223
4157	dm3.chr2R	10,863,206 – 10,863,296	- - - intron="intron;ID=intron_CG12424:2_CG12424:3;Name=CG12424-in;Parent=FBtr0087409,FBtr0087410,FBtr0087411;parent_type=mRNA" - - - -	5700	10,863,206 – 10,863,296	+	6	91	67.62	-1.87	0.47	0.974440
4159	dm3.chr2R	10,871,813 – 10,871,915	FBnoncoding="tRNA;ID=FBtr0087425;Name=tRNA:CR30241-RA;Parent=FBgn0050241;Alias=CR30241-RA;Dbxref=FlyBase_Annotation_IDs:CR30241-RA;score_text=Weakly" tRNAscann="Leu_chr2R_trna74" - intron="intron;ID=intron_FBgn0033988:1_FBgn0033988:2;Name=pcs-in;Parent=FBtr0301507;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB011050621.1/467-540\|1.2e-34" - - -	5702	10,871,813 – 10,871,915	+	11	115	86.76	-1.95	0.90	0.976595
4159	dm3.chr2R	10,871,813 – 10,871,915		5703	10,871,813 – 10,871,915	-	11	115	86.76	-1.34	0.98	0.946841
4160	dm3.chr2R	10,872,987 – 10,873,142	- - - intron="intron;ID=intron_FBgn0033988:1_FBgn0033988:2;Name=pcs-in;Parent=FBtr0301507;parent_type=mRNA" - - - -	5705	10,873,050 – 10,873,142	-	5	101	94.98	-2.14	1.00	0.986386
4163	dm3.chr2R	10,923,458 – 10,923,516	- - - - - - - -	5708	10,923,458 – 10,923,516	-	7	62	68.28	-1.07	0.55	0.909713
4164	dm3.chr2R	10,928,665 – 10,928,755	- - - - - - - -	5709	10,928,665 – 10,928,755	+	3	92	82.42	-2.80	0.82	0.991359
4165	dm3.chr2R	10,940,751 – 10,940,846	- - - - - - - -	5711	10,940,751 – 10,940,846	+	6	112	71.52	-2.49	0.52	0.991718
4166	dm3.chr2R	10,941,999 – 10,942,109	- - - - - - - -	5712	10,941,999 – 10,942,109	+	12	114	75.68	-2.66	0.40	0.981254
4168	dm3.chr2R	10,945,857 – 10,946,013	- - - - - - - -	5714	10,945,857 – 10,945,955	-	8	104	58.82	-2.38	0.27	0.986847
4171	dm3.chr2R	10,954,716 – 10,954,819	- - - - - - - -	5721	10,954,716 – 10,954,819	-	11	110	69.76	-1.36	0.51	0.962075
4174	dm3.chr2R	10,970,532 – 10,970,632	- - - - - - - -	5724	10,970,532 – 10,970,632	+	6	113	85.49	-3.37	0.64	0.992836
4180	dm3.chr2R	11,024,232 – 11,024,394	- - - intron="intron;ID=intron_FBgn0015371:2_FBgn0015371:3;Name=chn-in;Parent=FBtr0087415,FBtr0305213,FBtr0305215,FBtr0305216;parent_type=mRNA" - - - -	5733	11,024,303 – 11,024,394	+	8	111	66.00	-0.78	0.64	0.935385
4182	dm3.chr2R	11,025,850 – 11,025,968	- - CDS="CDS;ID=CDS_FBgn0015371:3_670;Name=chn-cds;Parent=FBtr0305215;parent_type=mRNA" - - - - -	5735	11,025,850 – 11,025,968	-	12	126	77.38	-1.67	0.70	0.978552
4184	dm3.chr2R	11,048,972 – 11,049,053	- - - intron="intron;ID=intron_FBgn0013467:1_FBgn0013467:3;Name=igl-in;Parent=FBtr0087361;parent_type=mRNA" - - - -	5737	11,048,972 – 11,049,053	+	11	85	71.07	-1.64	0.55	0.986702
4189	dm3.chr2R	11,087,842 – 11,087,944	- - - - - - - -	5743	11,087,842 – 11,087,944	+	13	115	71.46	-0.85	0.61	0.932319
4193	dm3.chr2R	11,133,780 – 11,133,987	- - - - - - - -	5749	11,133,879 – 11,133,987	+	6	116	80.94	-2.03	0.67	0.934390
4195	dm3.chr2R	11,176,215 – 11,176,331	- - - - - - - -	5752	11,176,215 – 11,176,331	-	3	117	96.57	-2.09	0.92	0.917880
4196	dm3.chr2R	11,187,722 – 11,187,818	- - - - - - - -	5753	11,187,722 – 11,187,818	-	7	120	69.62	-2.87	0.36	0.985874
4197	dm3.chr2R	11,189,415 – 11,189,518	- - - - - - - -	5754	11,189,415 – 11,189,518	+	6	111	73.00	-2.09	0.45	0.923091
4197	dm3.chr2R	11,189,415 – 11,189,518	- - - - - - - -	5755	11,189,415 – 11,189,518	-	6	111	73.00	-1.53	0.68	0.970092
4198	dm3.chr2R	11,196,912 – 11,196,971	- - - - - - - -	5756	11,196,912 – 11,196,971	+	3	59	94.92	-2.24	0.94	0.967648
4199	dm3.chr2R	11,209,587 – 11,209,656	- - - - - - - -	5757	11,209,587 – 11,209,656	-	6	72	78.00	-3.04	0.37	0.940356
4200	dm3.chr2R	11,218,249 – 11,218,386	- - - - - - - -	5758	11,218,249 – 11,218,386	+	6	139	71.10	-1.48	0.61	0.972725
4200	dm3.chr2R	11,218,249 – 11,218,386	- - - - - - - -	5759	11,218,249 – 11,218,386	-	6	139	71.10	-1.71	0.54	0.971142
4202	dm3.chr2R	11,254,799 – 11,254,908	- - - - - - - -	5762	11,254,807 – 11,254,908	-	5	106	75.05	-4.01	0.43	0.999034
4216	dm3.chr2R	11,366,180 – 11,366,273	- - - intron="intron;ID=intron_CG8180:1_CG8180:2;Name=CG8180-in;Parent=FBtr0087359;parent_type=mRNA" - - - -	5776	11,366,180 – 11,366,273	-	4	103	75.17	-1.59	0.75	0.913321
4218	dm3.chr2R	11,396,748 – 11,396,847	- - - - - - - -	5778	11,396,748 – 11,396,847	+	5	106	85.73	-2.25	0.78	0.944541
4219	dm3.chr2R	11,440,789 – 11,440,887	- - - - - - - -	5779	11,440,789 – 11,440,887	-	7	98	77.25	-1.57	0.71	0.959928
4221	dm3.chr2R	11,467,951 – 11,468,045	- - - - - - - -	5781	11,467,951 – 11,468,045	-	9	117	67.89	-1.16	0.72	0.987707
4225	dm3.chr2R	11,488,680 – 11,488,781	- - - - - - - -	5786	11,488,680 – 11,488,781	-	9	105	80.11	-2.61	0.45	0.950382
4226	dm3.chr2R	11,492,379 – 11,492,481	- - - - - - - -	5787	11,492,379 – 11,492,481	+	5	102	75.15	-2.13	0.80	0.994395
4229	dm3.chr2R	11,520,882 – 11,521,042	- - - intron="intron;ID=intron_FBgn0260429:2_FBgn0260429:3;Name=CG42524-in;Parent=FBtr0300853,FBtr0304712;parent_type=mRNA" - - - -	5792	11,520,950 – 11,521,042	+	9	116	64.43	-2.27	0.29	0.902961
4229	dm3.chr2R	11,520,882 – 11,521,042		5793	11,520,950 – 11,521,042	-	9	116	64.43	-2.00	0.34	0.916889
4232	dm3.chr2R	11,556,647 – 11,556,715	- - - intron="intron;ID=intron_FBgn0023441:15_FBgn0023441:14;Name=fus-in;Parent=FBtr0087346,FBtr0087343,FBtr0087344,FBtr0087345,FBtr0302330;parent_type=mRNA" - - - -	5796	11,556,647 – 11,556,715	+	3	72	93.06	-2.61	1.01	0.995751
4232	dm3.chr2R	11,556,647 – 11,556,715		5797	11,556,647 – 11,556,715	-	3	72	93.06	-2.10	0.93	0.954727
4233	dm3.chr2R	11,587,168 – 11,587,276	- - - - - - - -	5798	11,587,168 – 11,587,276	-	7	120	64.53	-1.92	0.36	0.906649
4237	dm3.chr2R	11,604,927 – 11,604,981	- - - - - - - -	5803	11,604,927 – 11,604,981	+	11	69	81.16	-1.89	0.75	0.919376
4239	dm3.chr2R	11,616,685 – 11,616,781	- - - intron="intron;ID=intron_FBgn0050089:1_FBgn0050089:2;Name=CG30089-in;Parent=FBtr0087285;parent_type=mRNA" - - - -	5806	11,616,685 – 11,616,781	-	9	101	88.11	-3.95	0.90	0.999006
4242	dm3.chr2R	11,641,180 – 11,641,277	- - - intron="intron;ID=intron_FBgn0050089:3_FBgn0050089:4;Name=CG30089-in;Parent=FBtr0087285;parent_type=mRNA" - - - -	5810	11,641,180 – 11,641,277	+	7	100	73.79	-1.88	0.54	0.971574
4245	dm3.chr2R	11,652,838 – 11,653,011	- - - intron="intron;ID=intron_FBgn0083919:8_FBgn0083919:5;Name=Zasp52-in;Parent=FBtr0111048,FBtr0100387,FBtr0087315,FBtr0301314;parent_type=mRNA" - - - -	5815	11,652,917 – 11,653,011	+	4	100	91.24	-2.16	0.95	0.979599
4248	dm3.chr2R	11,679,283 – 11,679,333	- - - intron="intron;ID=intron_FBgn0083919:21_FBgn0083919:20;Name=Zasp52-in;Parent=FBtr0111048,FBtr0100387,FBtr0100388,FBtr0087315,FBtr0301313,FBtr0302163;parent_type=mRNA" - - - -	5820	11,679,283 – 11,679,333	+	4	52	87.58	-2.31	0.87	0.972570
4250	dm3.chr2R	11,685,335 – 11,685,426	- - - intron="intron;ID=intron_FBgn0083919:21_FBgn0083919:20;Name=Zasp52-in;Parent=FBtr0111048,FBtr0100387,FBtr0100388,FBtr0087315,FBtr0301313,FBtr0302163;parent_type=mRNA" - - - -	5823	11,685,335 – 11,685,426	+	9	95	82.68	-2.03	0.74	0.954484
4250	dm3.chr2R	11,685,335 – 11,685,426		5824	11,685,335 – 11,685,426	-	9	95	82.68	-2.07	0.78	0.972016
4255	dm3.chr2R	11,723,470 – 11,723,561	- - - - - - - -	5829	11,723,470 – 11,723,561	-	6	100	82.40	-2.48	0.63	0.938908
4256	dm3.chr2R	11,725,387 – 11,725,462	- - - - - - - -	5830	11,725,387 – 11,725,462	+	7	93	68.21	-1.83	0.60	0.984666
4256	dm3.chr2R	11,725,387 – 11,725,462	- - - - - - - -	5831	11,725,387 – 11,725,462	-	7	93	68.21	-1.20	0.70	0.949134
4257	dm3.chr2R	11,725,802 – 11,725,928	- - - - - - - -	5833	11,725,802 – 11,725,897	-	6	95	84.26	-2.28	0.76	0.965318
4258	dm3.chr2R	11,729,902 – 11,729,992	- - - - - - - -	5836	11,729,902 – 11,729,992	-	8	109	79.43	-2.65	0.52	0.956963
4263	dm3.chr2R	11,751,213 – 11,751,313	- - - - - - - -	5842	11,751,213 – 11,751,313	+	6	127	82.17	-2.10	0.77	0.947842
4266	dm3.chr2R	11,765,993 – 11,766,084	- - - intron="intron;ID=intron_FBgn0003425:9_FBgn0003425:8;Name=sli-in;Parent=FBtr0087302,FBtr0087303,FBtr0087304,FBtr0112831,FBtr0112832;parent_type=mRNA" - - - -	5846	11,765,993 – 11,766,084	-	8	108	67.13	-2.77	0.32	0.990247
4269	dm3.chr2R	11,787,658 – 11,787,775	- - - - - - - -	5851	11,787,670 – 11,787,775	+	7	115	72.48	-2.16	0.52	0.974265
4271	dm3.chr2R	11,799,733 – 11,799,825	- - - - - - - -	5854	11,799,733 – 11,799,825	+	7	94	81.40	-2.32	0.56	0.910519
4275	dm3.chr2R	11,818,038 – 11,818,137	- - - intron="intron;ID=intron_CG8291:10_CG8291:2;Name=bdg-in;Parent=FBtr0087300;parent_type=mRNA" - - - -	5858	11,818,038 – 11,818,137	+	5	116	73.78	-2.41	0.51	0.958855
4276	dm3.chr2R	11,818,973 – 11,819,024	- - - intron="intron;ID=intron_CG8291:10_CG8291:2;Name=bdg-in;Parent=FBtr0087300;parent_type=mRNA" - - - -	5860	11,818,973 – 11,819,024	-	5	53	75.29	-3.10	0.85	0.998940
4278	dm3.chr2R	11,821,499 – 11,821,599	- - - intron="intron;ID=intron_FBgn0015247:4_FBgn0015247:2;Name=Iap2-in;Parent=FBtr0087296;parent_type=mRNA" - - - -	5862	11,821,499 – 11,821,599	-	6	120	65.11	-2.53	0.29	0.923361
4279	dm3.chr2R	11,895,572 – 11,895,662	- - - - - - - -	5864	11,895,572 – 11,895,662	-	4	102	59.50	-1.31	0.51	0.957771
4282	dm3.chr2R	11,928,584 – 11,928,741	- - CDS="CDS;ID=CDS_FBgn0034070:4_678;Name=SP2353-cds;Parent=FBtr0087209;parent_type=mRNA" - - - - -	5868	11,928,651 – 11,928,741	-	4	90	92.53	-2.21	0.89	0.944867
4285	dm3.chr2R	11,947,538 – 11,947,637	- - - - - - - -	5871	11,947,538 – 11,947,637	-	4	106	85.01	-2.99	0.77	0.991111
4286	dm3.chr2R	11,952,737 – 11,952,844	FBnoncoding="pre_miRNA;ID=FBtr0304456;Name=mir-137-RM;Parent=FBgn0262446;Alias=CR43012-RM;Dbxref=FlyBase_Annotation_IDs:CR43012-RM,miRBase:MI0005849" - - - "Rfam_10.0=RF00694;mir-137;AASR01013769.1/615-715\|8.9e-45" - - "mirBase_v16=dsi-mir-137\|2.8e-48"	5872	11,952,737 – 11,952,844	+	12	130	74.97	-2.89	0.66	0.999242
4286	dm3.chr2R	11,952,737 – 11,952,844		5873	11,952,737 – 11,952,844	-	12	130	74.97	-2.77	0.73	0.999148
4289	dm3.chr2R	11,970,562 – 11,970,661	- - - - - - - -	5877	11,970,562 – 11,970,661	-	9	112	75.55	-1.47	0.60	0.910370
4290	dm3.chr2R	11,978,305 – 11,978,356	- - - intron="intron;ID=intron_FBgn0034072:16_FBgn0034072:15;Name=Dg-in;Parent=FBtr0087257,FBtr0087258,FBtr0087256,FBtr0306238;parent_type=mRNA" - - - -	5878	11,978,305 – 11,978,356	+	5	66	76.12	-2.19	0.59	0.953278
4291	dm3.chr2R	11,978,665 – 11,978,729	- - - intron="intron;ID=intron_FBgn0034072:16_FBgn0034072:15;Name=Dg-in;Parent=FBtr0087257,FBtr0087258,FBtr0087256,FBtr0306238;parent_type=mRNA" - - - -	5880	11,978,665 – 11,978,729	+	8	70	68.85	-1.57	0.51	0.949778
4291	dm3.chr2R	11,978,665 – 11,978,729		5881	11,978,665 – 11,978,729	-	8	70	68.85	-1.91	0.52	0.986967
4292	dm3.chr2R	11,982,482 – 11,982,579	- - - intron="intron;ID=intron_FBgn0034072:16_FBgn0034072:15;Name=Dg-in;Parent=FBtr0087257,FBtr0087258,FBtr0087256,FBtr0306238;parent_type=mRNA" - - - -	5883	11,982,486 – 11,982,579	-	3	93	92.11	-2.44	0.89	0.967989
4293	dm3.chr2R	11,986,346 – 11,986,414	- - - - - - - -	5884	11,986,346 – 11,986,414	+	6	75	55.02	-2.02	0.36	0.995025
4296	dm3.chr2R	12,002,624 – 12,002,737	- - - - - - - -	5889	12,002,624 – 12,002,737	+	8	116	63.11	-3.24	0.31	0.999056
4296	dm3.chr2R	12,002,624 – 12,002,737	- - - - - - - -	5890	12,002,624 – 12,002,737	-	8	116	63.11	-4.07	0.17	0.998007
4297	dm3.chr2R	12,007,073 – 12,007,240	- - - - - - - -	5891	12,007,073 – 12,007,170	+	4	120	76.90	-2.59	0.74	0.994133
4300	dm3.chr2R	12,024,898 – 12,024,950	- - - - - - - -	5895	12,024,898 – 12,024,950	+	3	52	93.59	-1.92	1.02	0.984145
4305	dm3.chr2R	12,095,138 – 12,095,232	FBnoncoding="tRNA;ID=FBtr0087198;Name=tRNA:CR30237-RA;Parent=FBgn0050237;Alias=CR30237-RA;Dbxref=FlyBase_Annotation_IDs:CR30237-RA;score_text=Weakly" tRNAscann="Gln_chr2R_trna73" - - "Rfam_10.0=RF00005;tRNA;AANI01016231.1/175977-176048\|2.5e-29" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|2.5e-29" "unique_Noncode_2.0=u183049_mRNAlike\|2.2e-29" -	5901	12,095,138 – 12,095,232	+	13	94	85.31	-2.16	0.89	0.989557
4306	dm3.chr2R	12,107,138 – 12,107,235	FBnoncoding="tRNA;ID=FBtr0087128;Name=tRNA:CR30239-RA;Parent=FBgn0050239;Alias=CR30239-RA;Dbxref=FlyBase_Annotation_IDs:CR30239-RA;score_text=Weakly" tRNAscann="Glu_chr2R_trna25" - - "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|1.1e-31" - - -	5904	12,107,138 – 12,107,235	-	13	105	77.32	-1.74	0.76	0.989896
4307	dm3.chr2R	12,107,555 – 12,107,649	FBnoncoding="tRNA;ID=FBtr0087129;Name=tRNA:CR30240-RA;Parent=FBgn0050240;Alias=CR30240-RA;Dbxref=FlyBase_Annotation_IDs:CR30240-RA;score_text=Weakly" tRNAscann="Glu_chr2R_trna26" - - "Rfam_10.0=RF00005;tRNA;AAGE02012517.1/230117-230179\|1.5e-27" - - -	5906	12,107,555 – 12,107,649	-	9	108	81.72	-1.08	0.96	0.921796
4310	dm3.chr2R	12,127,586 – 12,127,681	- - CDS="CDS;ID=CDS_FBgn0034098:2_582;Name=krimp-cds;Parent=FBtr0087189;parent_type=mRNA" - - - - -	5911	12,127,591 – 12,127,681	-	3	105	79.03	-2.31	0.67	0.912803
4311	dm3.chr2R	12,129,719 – 12,129,826	- - - - - - - -	5912	12,129,719 – 12,129,826	-	8	120	80.41	-2.05	0.63	0.919163
4315	dm3.chr2R	12,186,629 – 12,186,720	- - - - - - - -	5917	12,186,629 – 12,186,720	+	5	101	80.80	-1.72	0.78	0.903369
4316	dm3.chr2R	12,187,446 – 12,187,545	- - - - - - - -	5918	12,187,446 – 12,187,545	-	12	109	74.12	-2.54	0.37	0.949647
4318	dm3.chr2R	12,191,517 – 12,191,678	- - - - - - - -	5922	12,191,517 – 12,191,609	-	8	106	80.05	-2.58	0.53	0.952336
4322	dm3.chr2R	12,221,178 – 12,221,273	- - - intron="intron;ID=intron_FBgn0020611:12_FBgn0020611:11;Name=Vha44-in;Parent=FBtr0290031,FBtr0087176,FBtr0087175;parent_type=mRNA" - - - -	5927	12,221,178 – 12,221,273	+	6	111	78.50	-2.23	0.62	0.955636
4322	dm3.chr2R	12,221,178 – 12,221,273		5928	12,221,178 – 12,221,273	-	6	111	78.50	-3.50	0.73	0.999193
4332	dm3.chr2R	12,263,483 – 12,263,578	- - - - - - - -	5939	12,263,483 – 12,263,578	-	9	95	81.32	-1.66	0.75	0.933126
4332	dm3.chr2R	12,263,483 – 12,263,578	- - - - - - - -	5940	12,263,483 – 12,263,578	-	9	95	81.40	-1.65	0.75	0.930286
4335	dm3.chr2R	12,270,943 – 12,271,036	- - - - - - - -	5944	12,270,943 – 12,271,036	-	7	118	71.39	-2.03	0.57	0.983388
4341	dm3.chr2R	12,334,892 – 12,335,044	- - - - - - - -	5950	12,334,892 – 12,335,044	+	6	184	79.41	-2.38	0.64	0.964678
4341	dm3.chr2R	12,334,892 – 12,335,044	- - - - - - - -	5951	12,334,892 – 12,335,044	-	6	184	79.41	-2.90	0.64	0.992845
4343	dm3.chr2R	12,351,858 – 12,351,941	- - - - - - - -	5953	12,351,858 – 12,351,941	+	12	84	94.85	-1.52	0.99	0.932657
4343	dm3.chr2R	12,351,858 – 12,351,941	- - - - - - - -	5954	12,351,858 – 12,351,941	-	12	84	94.85	-1.94	0.93	0.936518
4346	dm3.chr2R	12,375,327 – 12,375,424	- - - - - - - -	5958	12,375,327 – 12,375,424	-	5	111	61.58	-1.49	0.49	0.971548
4348	dm3.chr2R	12,391,064 – 12,391,174	- - CDS="CDS;ID=CDS_CG4700:2_548;Name=Sema-2a-cds;Parent=FBtr0087088;parent_type=mRNA" - - - - -	5960	12,391,064 – 12,391,174	-	6	120	81.18	-2.08	0.70	0.937988
4351	dm3.chr2R	12,399,265 – 12,399,430	- - - intron="intron;ID=intron_CG4700:2_CG4700:3;Name=Sema-2a-in;Parent=FBtr0087088;parent_type=mRNA" - - - -	5963	12,399,265 – 12,399,382	+	8	120	84.77	-2.78	0.67	0.981282
				5964	12,399,305 – 12,399,416	+	7	116	82.87	-2.57	0.75	0.986472
				5965	12,399,318 – 12,399,430	+	7	116	81.85	-2.00	0.81	0.967632
4353	dm3.chr2R	12,402,222 – 12,402,347	- - - intron="intron;ID=intron_CG4700:2_CG4700:3;Name=Sema-2a-in;Parent=FBtr0087088;parent_type=mRNA" - - - -	5967	12,402,222 – 12,402,320	+	8	109	79.99	-2.32	0.59	0.967128
4353	dm3.chr2R	12,402,222 – 12,402,347		5968	12,402,222 – 12,402,320	-	8	109	79.99	-2.51	0.67	0.991836
4357	dm3.chr2R	12,441,272 – 12,441,367	- - - intron="intron;ID=intron_FBgn0034135:2_FBgn0034135:4;Name=Syn2-in;Parent=FBtr0087093,FBtr0087096,FBtr0306004;parent_type=mRNA" - - - -	5974	12,441,272 – 12,441,363	-	8	95	87.22	-2.17	0.78	0.932792
4357	dm3.chr2R	12,441,272 – 12,441,367		5975	12,441,276 – 12,441,367	-	8	97	88.53	-3.19	0.86	0.996694
4358	dm3.chr2R	12,446,191 – 12,446,283	- - - - - - - -	5977	12,446,191 – 12,446,283	-	8	92	75.15	-3.13	1.01	0.997617
4359	dm3.chr2R	12,450,676 – 12,450,769	- - - intron="intron;ID=intron_FBgn0034136:7_FBgn0034136:6;Name=DAT-in;Parent=FBtr0087125;parent_type=mRNA" - - - -	5978	12,450,676 – 12,450,769	-	12	109	84.74	-1.85	0.95	0.983458
4362	dm3.chr2R	12,503,621 – 12,503,694	- - - intron="intron;ID=intron_FBgn0034145:5_FBgn0034145:7;Name=CG5065-in;Parent=FBtr0302206;parent_type=mRNA" - - - -	5982	12,503,621 – 12,503,694	-	5	73	84.35	-2.60	0.67	0.959546
4365	dm3.chr2R	12,547,193 – 12,547,290	- - - - - - - -	5985	12,547,193 – 12,547,290	+	6	105	65.49	-2.26	0.34	0.956140
4365	dm3.chr2R	12,547,193 – 12,547,290	- - - - - - - -	5986	12,547,193 – 12,547,290	-	6	105	65.49	-2.12	0.35	0.941678
4367	dm3.chr2R	12,555,466 – 12,555,606	- - - - - - - -	5988	12,555,466 – 12,555,570	+	4	115	67.35	-2.34	0.58	0.993283
4368	dm3.chr2R	12,573,086 – 12,573,155	- - - - - - - -	5991	12,573,086 – 12,573,155	-	5	71	76.28	-2.01	0.74	0.985642
4370	dm3.chr2R	12,594,154 – 12,594,249	- - - intron="intron;ID=intron_FBgn0050463:14_FBgn0050463:13;Name=CG30463-in;Parent=FBtr0087112,FBtr0113379;parent_type=mRNA" - - - -	5993	12,594,154 – 12,594,249	-	6	107	79.83	-1.58	0.81	0.928988
4382	dm3.chr2R	12,652,958 – 12,653,050	- - CDS="CDS;ID=CDS_FBgn0259738:1_555;Name=CG42392-cds;Parent=FBtr0300043;parent_type=mRNA" intron="intron;ID=intron_FBgn0034155:29_FBgn0034155:28;Name=unc-104-in;Parent=FBtr0087079,FBtr0113088,FBtr0113089,FBtr0304679,FBtr0304680;parent_type=mRNA" - - - -	6006	12,652,958 – 12,653,050	+	6	105	88.84	-2.15	0.84	0.938535
4384	dm3.chr2R	12,681,405 – 12,681,547	- - CDS="CDS;ID=CDS_FBgn0034159:3_567;Name=CG15615-cds;Parent=FBtr0300552;parent_type=mRNA" intron="intron;ID=intron_FBgn0034159:3_FBgn0034159:2;Name=CG15615-in;Parent=FBtr0300552;parent_type=mRNA" - - - -	6009	12,681,439 – 12,681,547	-	14	120	71.51	-0.84	0.66	0.904405
4387	dm3.chr2R	12,718,930 – 12,719,031	FBnoncoding="pre_miRNA;ID=FBtr0304404;Name=mir-8-RM;Parent=FBgn0262432;Alias=CR42988-RM;Dbxref=FlyBase_Annotation_IDs:CR42988-RM,miRBase:MI0000128" - - - "Rfam_10.0=RF00241;mir-8;AAPU01010182.1/5430-5508\|1.0e-22" "Noncode_2.0=n178708_u177806_NW_045840_miRNA_Anopheles\|8.9e-14" "unique_Noncode_2.0=u177806_miRNA_Anopheles\|7.7e-14" "mirBase_v16=dya-mir-8\|9.8e-45"	6012	12,718,930 – 12,719,031	+	15	115	82.85	-4.80	0.93	0.998944
4387	dm3.chr2R	12,718,930 – 12,719,031		6013	12,718,930 – 12,719,031	-	15	115	82.85	-4.20	0.85	0.999476
4388	dm3.chr2R	12,719,524 – 12,719,619	- - - - - - - -	6014	12,719,524 – 12,719,619	-	3	98	69.37	-2.35	0.59	0.979046
4398	dm3.chr2R	12,778,766 – 12,778,908	- - - - - - - -	6027	12,778,766 – 12,778,908	-	6	149	80.92	-2.63	0.67	0.989405
4399	dm3.chr2R	12,793,617 – 12,793,788	- - - - - - - -	6028	12,793,617 – 12,793,788	+	4	172	95.14	-2.29	0.94	0.972425
4400	dm3.chr2R	12,802,096 – 12,802,216	- - - - - - - -	6030	12,802,096 – 12,802,216	-	5	120	95.64	-2.06	0.93	0.940320
4403	dm3.chr2R	12,806,035 – 12,806,146	- - - - - - - -	6033	12,806,035 – 12,806,146	+	8	119	70.23	-1.86	0.56	0.989619
4405	dm3.chr2R	12,814,459 – 12,814,578	- - - intron="intron;ID=intron_FBgn0003091:4_FBgn0003091:5;Name=Pkc53E-in;Parent=FBtr0087048,FBtr0112819,FBtr0305070;parent_type=mRNA" - - - -	6035	12,814,459 – 12,814,578	+	5	120	64.63	-2.12	0.47	0.989756
4405	dm3.chr2R	12,814,459 – 12,814,578		6036	12,814,459 – 12,814,578	-	5	120	64.63	-2.25	0.45	0.990810
4406	dm3.chr2R	12,819,979 – 12,820,034	- - CDS="CDS;ID=CDS_FBgn0003091:8_673;Name=Pkc53E-cds;Parent=FBtr0087048;parent_type=mRNA" - - - - -	6037	12,819,979 – 12,820,034	+	13	69	77.84	-2.11	0.75	0.989932
4407	dm3.chr2R	12,844,973 – 12,845,032	- - - - - - - -	6038	12,844,973 – 12,845,032	-	5	59	90.00	-2.06	0.94	0.976231
4410	dm3.chr2R	12,855,511 – 12,855,599	FBnoncoding="tRNA;ID=FBtr0087055;Name=tRNA:G3:53E-RA;Parent=FBgn0011867;Dbxref=FlyBase_Annotation_IDs:CR30236-RA;score_text=Weakly" tRNAscann="Gly_chr2R_trna27" - - "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|9.4e-32" - "unique_Noncode_2.0=u121243_piRNA_human\|9.5e-07" -	6042	12,855,511 – 12,855,599	+	13	93	82.72	-1.93	0.86	0.986397
4410	dm3.chr2R	12,855,511 – 12,855,599		6043	12,855,511 – 12,855,599	-	13	93	82.72	-1.84	0.74	0.961902
4424	dm3.chr2R	12,951,543 – 12,951,700	- - - intron="intron;ID=intron_FBgn0034187:4_FBgn0034187:5;Name=CG6967-in;Parent=FBtr0300276;parent_type=mRNA" - - - -	6057	12,951,543 – 12,951,700	+	3	158	90.91	-2.57	0.90	0.982305
4427	dm3.chr2R	12,971,515 – 12,971,652	- - - - - - - -	6060	12,971,515 – 12,971,620	+	5	107	94.58	-2.14	0.98	0.982667
4427	dm3.chr2R	12,971,515 – 12,971,652	- - - - - - - -	6061	12,971,551 – 12,971,652	+	4	111	86.52	-2.58	0.73	0.952115
4432	dm3.chr2R	13,022,715 – 13,022,806	- - - - - - - -	6069	13,022,715 – 13,022,806	+	3	93	62.27	-1.44	0.56	0.900444
4433	dm3.chr2R	13,024,512 – 13,024,625	- - - - - - - -	6070	13,024,512 – 13,024,625	-	6	113	72.41	-1.78	0.53	0.943173
4437	dm3.chr2R	13,031,468 – 13,031,588	FBnoncoding="tRNA;ID=FBtr0087001;Name=tRNA:CR30234-RA;Parent=FBgn0050234;Alias=CR30234-RA;Dbxref=FlyBase_Annotation_IDs:CR30234-RA;score_text=Weakly" tRNAscann="Leu_chr2R_trna71" - - "Rfam_10.0=RF00005;tRNA;ABJB011050621.1/467-540\|1.4e-34" - - -	6075	13,031,468 – 13,031,588	+	13	140	76.64	-1.00	0.78	0.918517
4437	dm3.chr2R	13,031,468 – 13,031,588		6076	13,031,468 – 13,031,588	-	13	140	76.64	-0.91	0.86	0.925398
4438	dm3.chr2R	13,042,729 – 13,042,792	- - - - - - - -	6077	13,042,729 – 13,042,792	+	11	66	67.07	-1.26	0.55	0.986562
4446	dm3.chr2R	13,095,500 – 13,095,604	- - - - - - - -	6087	13,095,500 – 13,095,604	+	6	106	86.05	-2.00	0.82	0.939536
4447	dm3.chr2R	13,096,410 – 13,096,610	- - - - - - - -	6090	13,096,510 – 13,096,610	-	6	108	78.88	-2.58	0.69	0.992886
4449	dm3.chr2R	13,111,735 – 13,111,873	- - - - - - - -	6093	13,111,759 – 13,111,856	+	7	109	82.08	-2.21	0.84	0.987552
				6094	13,111,783 – 13,111,873	+	6	100	78.79	-2.03	0.88	0.989473
				6095	13,111,783 – 13,111,873	-	6	100	78.79	-1.85	0.71	0.944282
4452	dm3.chr2R	13,130,987 – 13,131,112	- - - - - - - -	6098	13,130,987 – 13,131,112	+	5	128	65.61	-1.75	0.55	0.990352
4457	dm3.chr2R	13,155,700 – 13,155,780	- - - intron="intron;ID=intron_FBgn0053197:1_FBgn0053197:2;Name=mbl-in;Parent=FBtr0086992,FBtr0086991,FBtr0086993,FBtr0301482,FBtr0290299,FBtr0290298,FBtr0086994;parent_type=mRNA" - - - -	6104	13,155,700 – 13,155,780	+	7	83	77.86	-2.51	0.56	0.970286
4458	dm3.chr2R	13,164,076 – 13,164,180	- - - intron="intron;ID=intron_FBgn0053197:2_FBgn0053197:3;Name=mbl-in;Parent=FBtr0086993;parent_type=mRNA" - - - -	6106	13,164,076 – 13,164,180	+	6	116	60.98	-3.05	0.34	0.999287
4458	dm3.chr2R	13,164,076 – 13,164,180		6107	13,164,076 – 13,164,180	-	6	116	60.98	-2.52	0.25	0.970691
4465	dm3.chr2R	13,227,688 – 13,227,784	- - - - - - - -	6114	13,227,688 – 13,227,784	+	7	115	76.65	-1.33	0.78	0.912581
4469	dm3.chr2R	13,265,352 – 13,265,407	- - - - - - - -	6120	13,265,352 – 13,265,407	-	5	55	98.55	-2.24	0.91	0.919736
4470	dm3.chr2R	13,271,702 – 13,271,755	- - - - - - - -	6121	13,271,702 – 13,271,755	-	5	53	96.98	-1.95	0.96	0.944295
4471	dm3.chr2R	13,279,247 – 13,279,357	FBnoncoding="tRNA;ID=FBtr0086965;Name=tRNA:CR30232-RA;Parent=FBgn0050232;Alias=CR30232-RA;Dbxref=FlyBase_Annotation_IDs:CR30232-RA;score_text=Weakly" tRNAscann="Ala_chr2R_trna70" - - "Rfam_10.0=RF00005;tRNA;AAAB01008987.1/4870403-4870474\|1.8e-24" - - -	6122	13,279,247 – 13,279,357	+	13	128	70.68	-0.73	0.68	0.907193
4471	dm3.chr2R	13,279,247 – 13,279,357		6123	13,279,247 – 13,279,357	-	13	128	70.68	-1.50	0.78	0.994205
4473	dm3.chr2R	13,299,190 – 13,299,281	- - - - - - - -	6125	13,299,190 – 13,299,281	+	3	91	64.79	-1.67	0.60	0.945438
4475	dm3.chr2R	13,322,757 – 13,322,849	- - - intron="intron;ID=intron_CG6542:1_CG6542:2;Name=EDTP-in;Parent=FBtr0086958;parent_type=mRNA" - - - -	6127	13,322,757 – 13,322,849	+	8	96	63.28	-1.95	0.35	0.973339
4477	dm3.chr2R	13,324,957 – 13,325,019	- - - intron="intron;ID=intron_CG6542:1_CG6542:2;Name=EDTP-in;Parent=FBtr0086958;parent_type=mRNA" - - - -	6129	13,324,957 – 13,325,019	+	5	74	76.99	-2.06	0.57	0.910935
4484	dm3.chr2R	13,384,668 – 13,384,725	- - - - - - - -	6136	13,384,668 – 13,384,725	+	6	58	92.44	-2.25	0.86	0.940714
4486	dm3.chr2R	13,391,170 – 13,391,272	- - - intron="intron;ID=intron_FBgn0262720:2_FBgn0262720:3;Name=CG43164-in;Parent=FBtr0305701,FBtr0305702,FBtr0305704,FBtr0305705;parent_type=mRNA" - - - -	6138	13,391,170 – 13,391,272	+	7	105	75.55	-2.18	0.67	0.985704
4491	dm3.chr2R	13,450,116 – 13,450,209	- - - intron="intron;ID=intron_CG15844:7_CG15844:8;Name=Klp54D-in;Parent=FBtr0086826;parent_type=mRNA" - - - -	6143	13,450,116 – 13,450,209	+	12	112	68.08	-4.50	0.20	0.998460
4493	dm3.chr2R	13,462,821 – 13,462,878	- - - - - - - -	6146	13,462,821 – 13,462,878	-	5	70	64.44	-3.57	0.18	0.969136
4499	dm3.chr2R	13,500,080 – 13,500,171	- - - intron="intron;ID=intron_CG10936:3_CG10936:4;Name=CG10936-in;Parent=FBtr0086894,FBtr0086895;parent_type=mRNA" - - - -	6152	13,500,080 – 13,500,171	+	6	93	79.01	-2.89	0.48	0.976535
4499	dm3.chr2R	13,500,080 – 13,500,171		6153	13,500,080 – 13,500,171	-	6	93	79.01	-2.75	0.50	0.971886
4502	dm3.chr2R	13,540,920 – 13,541,052	- - - intron="intron;ID=intron_FBgn0050106:8_FBgn0050106:7;Name=CCHa1r-in;Parent=FBtr0086893;parent_type=mRNA" - - - -	6156	13,540,920 – 13,541,010	-	7	113	64.33	-2.39	0.45	0.997276
4502	dm3.chr2R	13,540,920 – 13,541,052		6157	13,540,944 – 13,541,046	-	8	109	62.11	-1.45	0.52	0.994231
4503	dm3.chr2R	13,542,140 – 13,542,211	- - - - - - - -	6159	13,542,140 – 13,542,211	+	5	77	88.83	-1.77	0.98	0.972343
4506	dm3.chr2R	13,556,457 – 13,556,550	- - - - - - - -	6164	13,556,457 – 13,556,550	+	12	117	62.30	-3.81	0.44	0.999966
4506	dm3.chr2R	13,556,457 – 13,556,550	- - - - - - - -	6165	13,556,457 – 13,556,550	-	12	117	62.30	-3.36	0.32	0.999521
4507	dm3.chr2R	13,561,634 – 13,561,724	- - - - - - - -	6167	13,561,634 – 13,561,724	-	11	103	60.34	-1.91	0.52	0.999387
4508	dm3.chr2R	13,568,022 – 13,568,114	- - - - - - - -	6168	13,568,022 – 13,568,114	+	5	92	95.06	-2.10	0.95	0.964061
4508	dm3.chr2R	13,568,022 – 13,568,114	- - - - - - - -	6169	13,568,022 – 13,568,114	-	5	92	95.06	-2.04	0.96	0.964808
4510	dm3.chr2R	13,595,473 – 13,595,596	- - - - - - - -	6173	13,595,492 – 13,595,596	+	12	116	70.71	-0.98	0.74	0.953341
4511	dm3.chr2R	13,624,642 – 13,624,744	- - - - - - - -	6175	13,624,642 – 13,624,744	-	7	109	71.19	-1.36	0.58	0.936988
4512	dm3.chr2R	13,627,332 – 13,627,453	- - - - - - - -	6176	13,627,332 – 13,627,453	+	6	132	63.07	-2.23	0.29	0.901159
4513	dm3.chr2R	13,654,359 – 13,654,458	- - CDS="CDS;ID=CDS_CG6370:1_528;Name=CG6370-cds;Parent=FBtr0089559;parent_type=mRNA" - - - - -	6177	13,654,359 – 13,654,458	+	12	117	70.12	-1.69	0.50	0.974251
4513	dm3.chr2R	13,654,359 – 13,654,458		6178	13,654,359 – 13,654,458	-	12	117	70.12	-1.23	0.56	0.944202
4516	dm3.chr2R	13,671,286 – 13,671,420	FBnoncoding="pre_miRNA;ID=FBtr0304353;Name=mir-31a-RM;Parent=FBgn0262416;Alias=CR42964-RM;Dbxref=FlyBase_Annotation_IDs:CR42964-RM,miRBase:MI0000420" - - - "Rfam_10.0=RF00661;mir-31;AAGH01011800.1/12109-12196\|1.8e-43" - - "mirBase_v16=dsi-mir-31a\|1.4e-47"	6182	13,671,286 – 13,671,392	-	12	120	84.87	-4.31	0.80	0.999472
4516	dm3.chr2R	13,671,286 – 13,671,420		6184	13,671,313 – 13,671,420	-	12	113	74.71	-1.56	0.66	0.986381
4518	dm3.chr2R	13,691,621 – 13,691,720	- - - intron="intron;ID=intron_FBgn0259211:1_FBgn0259211:2;Name=grh-in;Parent=FBtr0299705,FBtr0299706,FBtr0300538,FBtr0300539;parent_type=mRNA" - - - -	6186	13,691,621 – 13,691,720	-	5	107	94.12	-2.04	0.92	0.939541
4519	dm3.chr2R	13,722,467 – 13,722,636	- - - intron="intron;ID=intron_FBgn0259211:14_FBgn0259211:15;Name=grh-in;Parent=FBtr0299705,FBtr0299706,FBtr0299707,FBtr0300538,FBtr0300539,FBtr0300540,FBtr0300541;parent_type=mRNA" - - - -	6188	13,722,534 – 13,722,636	+	4	107	66.39	-1.65	0.72	0.986483
4520	dm3.chr2R	13,725,506 – 13,725,613	- - - intron="intron;ID=intron_FBgn0259211:15_FBgn0259211:17;Name=grh-in;Parent=FBtr0299705,FBtr0299706,FBtr0299707,FBtr0300541;parent_type=mRNA" - - - -	6189	13,725,506 – 13,725,613	+	3	107	90.00	-1.38	1.00	0.930529
4527	dm3.chr2R	13,778,217 – 13,778,322	- - - - - - - -	6201	13,778,217 – 13,778,322	-	6	113	87.89	-3.89	0.54	0.991598
4528	dm3.chr2R	13,783,501 – 13,783,552	- - - - - - - -	6202	13,783,501 – 13,783,552	+	8	51	97.48	-2.47	0.99	0.990323
4528	dm3.chr2R	13,783,501 – 13,783,552	- - - - - - - -	6203	13,783,501 – 13,783,552	-	8	51	97.48	-1.57	0.99	0.917431
4529	dm3.chr2R	13,791,780 – 13,791,877	- - - intron="intron;ID=intron_CG5076:6_CG5076:7;Name=elk-in;Parent=FBtr0086802;parent_type=mRNA" - - - -	6204	13,791,780 – 13,791,877	+	6	115	75.78	-2.44	0.68	0.994383
4529	dm3.chr2R	13,791,780 – 13,791,877		6205	13,791,780 – 13,791,877	-	6	115	75.78	-2.46	0.65	0.993383
4536	dm3.chr2R	13,825,313 – 13,825,411	- - - - - - - -	6212	13,825,313 – 13,825,411	-	12	116	78.27	-2.28	0.68	0.989498
4537	dm3.chr2R	13,845,569 – 13,845,641	- - - - - - - -	6213	13,845,569 – 13,845,641	-	3	81	54.70	-0.97	0.63	0.933244
4540	dm3.chr2R	13,855,182 – 13,855,336	- - - - - - - -	6217	13,855,182 – 13,855,290	-	6	119	84.40	-2.67	0.63	0.953228
				6218	13,855,221 – 13,855,324	+	6	115	82.07	-2.72	0.67	0.986392
				6219	13,855,221 – 13,855,324	-	6	115	82.07	-3.22	0.60	0.993769
				6220	13,855,233 – 13,855,336	+	6	114	78.69	-2.37	0.58	0.960380
				6221	13,855,233 – 13,855,336	-	6	114	78.69	-3.66	0.55	0.998698
4541	dm3.chr2R	13,864,334 – 13,864,461	- - - intron="intron;ID=intron_FBgn0034286:2_FBgn0034286:1;Name=dpr13-in;Parent=FBtr0300215;parent_type=mRNA" - - - -	6223	13,864,359 – 13,864,461	+	11	113	72.36	-0.95	0.64	0.910344
4545	dm3.chr2R	13,880,998 – 13,881,098	- - - intron="intron;ID=intron_FBgn0034286:7_FBgn0034286:6;Name=dpr13-in;Parent=FBtr0300215;parent_type=mRNA" - - - -	6227	13,880,998 – 13,881,098	-	12	115	71.85	-1.52	0.53	0.938576
4546	dm3.chr2R	13,890,645 – 13,890,761	- - - intron="intron;ID=intron_FBgn0034286:7_FBgn0034286:6;Name=dpr13-in;Parent=FBtr0300215;parent_type=mRNA" - - - -	6228	13,890,645 – 13,890,761	+	8	117	71.15	-1.56	0.51	0.902593
4546	dm3.chr2R	13,890,645 – 13,890,761		6229	13,890,645 – 13,890,761	-	8	117	71.15	-1.94	0.53	0.979915
4547	dm3.chr2R	13,898,891 – 13,898,977	- - - - - - - -	6230	13,898,891 – 13,898,977	+	11	98	78.16	-1.98	0.58	0.952140
4548	dm3.chr2R	13,915,816 – 13,915,940	- - - - - - - -	6233	13,915,816 – 13,915,924	-	3	110	91.52	-2.52	0.91	0.981868
4548	dm3.chr2R	13,915,816 – 13,915,940	- - - - - - - -	6235	13,915,828 – 13,915,940	-	3	114	90.35	-2.81	0.91	0.991852
4549	dm3.chr2R	13,942,046 – 13,942,137	- - - - - - - -	6236	13,942,046 – 13,942,137	-	5	106	69.14	-1.92	0.50	0.945437
4551	dm3.chr2R	13,956,720 – 13,956,852	- - - intron="intron;ID=intron_FBgn0085415:1_FBgn0085415:2;Name=CG34386-in;Parent=FBtr0112627;parent_type=mRNA" - - - -	6238	13,956,720 – 13,956,852	-	7	144	73.35	-2.40	0.51	0.991711
4556	dm3.chr2R	14,004,730 – 14,004,781	- - - - - - - -	6244	14,004,730 – 14,004,781	+	3	55	54.04	-1.13	0.59	0.963003
4557	dm3.chr2R	14,030,297 – 14,030,470	FBnoncoding="snoRNA;ID=FBtr0113513;Name=snoRNA:Psi18S-1347a-RA;Parent=FBgn0083054;Dbxref=FlyBase_Annotation_IDs:CR34544-RA,REFSEQ:NR_003806;score_text=Weakly" - - intron="intron;ID=intron_FBgn0003031:9_FBgn0003031:11;Name=pAbp-in;Parent=FBtr0086736,FBtr0086743,FBtr0086740,FBtr0086739,FBtr0086737;parent_type=mRNA" - - - -	6245	14,030,297 – 14,030,404	+	12	115	74.47	-1.88	0.50	0.961504
4557	dm3.chr2R	14,030,297 – 14,030,470		6246	14,030,370 – 14,030,470	+	12	108	62.19	-1.49	0.42	0.981602
4559	dm3.chr2R	14,030,682 – 14,030,826	FBnoncoding="snoRNA;ID=FBtr0091610;Name=snoRNA:Psi18S-1347c-RA;Parent=FBgn0086600;Alias=snoRNA:203-RA;Dbxref=FlyBase_Annotation_IDs:CR33633-RA,REFSEQ:NR_002546;score_text=Weakly" - - intron="intron;ID=intron_FBgn0003031:9_FBgn0003031:11;Name=pAbp-in;Parent=FBtr0086736,FBtr0086743,FBtr0086740,FBtr0086739,FBtr0086737;parent_type=mRNA" - "Noncode_2.0=n3516_u3144_AJ544014_snoRNA_Drosophila\|3.7e-20" "unique_Noncode_2.0=u3144_snoRNA_Drosophila\|3.2e-20" -	6248	14,030,682 – 14,030,826	+	12	178	72.10	-2.49	0.41	0.975135
4565	dm3.chr2R	14,106,486 – 14,106,698	- - - - - - - -	6255	14,106,526 – 14,106,634	+	6	108	78.42	-1.41	0.90	0.951856
4568	dm3.chr2R	14,131,662 – 14,131,740	- - - - - - - -	6260	14,131,662 – 14,131,740	-	4	87	64.91	-1.37	0.54	0.914800
4569	dm3.chr2R	14,142,586 – 14,142,710	- - - - - - - -	6261	14,142,586 – 14,142,687	+	11	116	68.89	-2.83	0.48	0.999398
				6262	14,142,586 – 14,142,687	-	11	116	68.89	-1.44	0.45	0.911889
				6263	14,142,612 – 14,142,710	+	7	114	70.57	-2.57	0.49	0.994534
4573	dm3.chr2R	14,173,368 – 14,173,489	- - CDS="CDS;ID=CDS_FBgn0010575:9_617;Name=sbb-cds;Parent=FBtr0301550,FBtr0301551;parent_type=mRNA" - - - - -	6267	14,173,368 – 14,173,468	+	9	100	75.79	-1.73	0.59	0.957631
4573	dm3.chr2R	14,173,368 – 14,173,489		6269	14,173,398 – 14,173,489	+	12	110	62.36	-1.45	0.39	0.908678
4575	dm3.chr2R	14,179,907 – 14,180,054	- - - intron="intron;ID=intron_FBgn0010575:16_FBgn0010575:13;Name=sbb-in;Parent=FBtr0301547;parent_type=mRNA" - - - -	6272	14,179,907 – 14,180,054	-	7	151	72.78	-2.24	0.44	0.938083
4576	dm3.chr2R	14,194,578 – 14,194,685	- - - - - - - -	6273	14,194,578 – 14,194,685	+	10	119	88.54	-3.26	0.82	0.996592
4580	dm3.chr2R	14,229,608 – 14,229,764	- - - - - - - -	6278	14,229,648 – 14,229,764	-	5	116	90.07	-2.23	0.84	0.937999
4582	dm3.chr2R	14,260,084 – 14,260,151	- - - - - - - -	6280	14,260,084 – 14,260,151	+	3	67	79.68	-1.58	0.89	0.911147
4585	dm3.chr2R	14,279,150 – 14,279,202	- - - - - - - -	6283	14,279,150 – 14,279,202	+	5	53	94.47	-1.89	0.93	0.923742
4586	dm3.chr2R	14,289,447 – 14,289,503	- - - - - - - -	6284	14,289,447 – 14,289,503	-	4	56	89.79	-3.86	0.89	0.998568
4588	dm3.chr2R	14,310,528 – 14,310,631	- - - intron="intron;ID=intron_FBgn0034345:2_FBgn0034345:4;Name=CG5174-in;Parent=FBtr0301148;parent_type=mRNA" - - - -	6286	14,310,528 – 14,310,631	+	5	103	79.78	-1.46	0.85	0.900941
4594	dm3.chr2R	14,356,871 – 14,356,971	- - - intron="intron;ID=intron_CG30116:9_CG30116:10;Name=CG30116-in;Parent=FBtr0086718,FBtr0086719,FBtr0086720,FBtr0086721;parent_type=mRNA" - - - -	6294	14,356,871 – 14,356,971	+	6	108	82.73	-2.32	0.67	0.941775
4596	dm3.chr2R	14,385,837 – 14,385,951	- - - - - - - -	6296	14,385,837 – 14,385,928	+	8	117	66.54	-2.02	0.42	0.961150
				6297	14,385,837 – 14,385,928	-	8	117	66.54	-2.29	0.44	0.989543
				6298	14,385,853 – 14,385,951	+	6	118	79.86	-2.19	0.81	0.985053
4598	dm3.chr2R	14,449,144 – 14,449,259	- - - intron="intron;ID=intron_FBgn0050115:8_FBgn0050115:7;Name=CG30115-in;Parent=FBtr0300421;parent_type=mRNA" - - - -	6302	14,449,163 – 14,449,259	+	4	98	65.02	-2.18	0.55	0.996150
4599	dm3.chr2R	14,455,381 – 14,455,488	- - - intron="intron;ID=intron_FBgn0050115:8_FBgn0050115:7;Name=CG30115-in;Parent=FBtr0300421;parent_type=mRNA" - - - -	6304	14,455,381 – 14,455,488	-	5	112	90.55	-1.73	0.92	0.918078
4600	dm3.chr2R	14,456,645 – 14,456,757	- - - intron="intron;ID=intron_FBgn0050115:8_FBgn0050115:7;Name=CG30115-in;Parent=FBtr0300421;parent_type=mRNA" - - - -	6306	14,456,645 – 14,456,757	-	5	121	74.64	-2.13	0.56	0.949709
4601	dm3.chr2R	14,461,269 – 14,461,406	- - - intron="intron;ID=intron_FBgn0050115:8_FBgn0050115:7;Name=CG30115-in;Parent=FBtr0300421;parent_type=mRNA" - - - -	6307	14,461,269 – 14,461,373	+	7	107	63.79	-1.40	0.59	0.994627
4601	dm3.chr2R	14,461,269 – 14,461,406		6308	14,461,308 – 14,461,406	+	8	103	71.71	-2.57	0.40	0.991285
4602	dm3.chr2R	14,478,856 – 14,478,921	- - - intron="intron;ID=intron_FBgn0050115:8_FBgn0050115:7;Name=CG30115-in;Parent=FBtr0300421;parent_type=mRNA" - - - -	6310	14,478,856 – 14,478,921	-	4	65	52.56	-0.95	0.64	0.994847
4609	dm3.chr2R	14,520,993 – 14,521,126	- - CDS="CDS;ID=CDS_FBgn0050122:7_606;Name=CG30122-cds;Parent=FBtr0086660,FBtr0300923,FBtr0300924;parent_type=mRNA" - - - - -	6319	14,520,993 – 14,521,104	+	14	119	75.65	-2.24	0.59	0.997226
				6320	14,520,993 – 14,521,104	-	14	119	75.65	-2.54	0.60	0.998889
				6321	14,521,031 – 14,521,126	+	14	109	76.33	-2.84	0.67	0.999272
				6322	14,521,031 – 14,521,126	-	14	109	76.33	-2.98	0.61	0.999313
4610	dm3.chr2R	14,524,510 – 14,524,605	- - CDS="CDS;ID=CDS_FBgn0050122:12_606;Name=CG30122-cds;Parent=FBtr0086660,FBtr0300923,FBtr0300924;parent_type=mRNA" - - - - -	6323	14,524,510 – 14,524,605	-	7	109	68.64	-1.59	0.55	0.973417
4611	dm3.chr2R	14,527,061 – 14,527,150	FBnoncoding="tRNA;ID=FBtr0086603;Name=tRNA:CR30227-RA;Parent=FBgn0050227;Alias=CR30227-RA;Dbxref=FlyBase_Annotation_IDs:CR30227-RA;score_text=Weakly" tRNAscann="Trp_chr2R_trna31" - - "Rfam_10.0=RF00005;tRNA;AACT01024226.1/911-979\|5.9e-30" - - -	6324	14,527,061 – 14,527,150	+	11	97	80.00	-0.85	1.00	0.913879
4613	dm3.chr2R	14,558,276 – 14,558,381	- - - intron="intron;ID=intron_CG15085:1_CG15085:2;Name=edl-in;Parent=FBtr0086652;parent_type=mRNA" - - - -	6327	14,558,276 – 14,558,381	+	12	115	85.67	-2.05	0.79	0.940165
4613	dm3.chr2R	14,558,276 – 14,558,381		6328	14,558,276 – 14,558,381	-	12	115	85.67	-1.78	0.85	0.933609
4616	dm3.chr2R	14,583,061 – 14,583,175	- - - intron="intron;ID=intron_FBgn0262103:5_FBgn0262103:6;Name=CG42856-in;Parent=FBtr0304025;parent_type=mRNA" - - - -	6332	14,583,061 – 14,583,175	-	4	116	71.30	-2.06	0.67	0.987817
4619	dm3.chr2R	14,603,676 – 14,603,770	- - - - - - - -	6336	14,603,676 – 14,603,770	-	4	94	76.38	-2.36	0.54	0.912160
4620	dm3.chr2R	14,626,980 – 14,627,079	- - - - - - - -	6337	14,626,980 – 14,627,079	+	3	120	75.81	-3.08	0.76	0.996980
4620	dm3.chr2R	14,626,980 – 14,627,079	- - - - - - - -	6338	14,626,980 – 14,627,079	-	3	120	75.81	-2.15	0.66	0.903832
4627	dm3.chr2R	14,720,567 – 14,720,682	- - - - - - - -	6346	14,720,567 – 14,720,682	+	11	119	63.62	-1.29	0.46	0.970621
4632	dm3.chr2R	14,758,569 – 14,758,681	- - - - - - - -	6353	14,758,569 – 14,758,679	-	11	117	76.88	-2.62	0.47	0.976936
4633	dm3.chr2R	14,760,488 – 14,760,602	- - - - - - - -	6355	14,760,488 – 14,760,588	-	11	118	73.88	-1.70	0.57	0.946400
				6356	14,760,500 – 14,760,602	+	11	116	80.04	-2.24	0.57	0.944977
				6357	14,760,500 – 14,760,602	-	11	116	80.04	-2.40	0.57	0.968134
4640	dm3.chr2R	14,782,300 – 14,782,374	- - - intron="intron;ID=intron_FBgn0034408:3_FBgn0034408:4;Name=sano-in;Parent=FBtr0290300;parent_type=mRNA" - - - -	6368	14,782,300 – 14,782,374	+	6	74	88.38	-2.48	0.85	0.983472
4641	dm3.chr2R	14,805,591 – 14,805,740	- - - intron="intron;ID=intron_FBgn0034408:5_FBgn0034408:8;Name=sano-in;Parent=FBtr0086566,FBtr0086567,FBtr0290300;parent_type=mRNA" - - - -	6369	14,805,591 – 14,805,695	-	10	110	71.31	-2.39	0.52	0.998572
4641	dm3.chr2R	14,805,591 – 14,805,740		6370	14,805,619 – 14,805,721	-	13	120	72.78	-2.48	0.42	0.981118
4642	dm3.chr2R	14,811,452 – 14,811,587	- - - intron="intron;ID=intron_FBgn0034408:5_FBgn0034408:8;Name=sano-in;Parent=FBtr0086566,FBtr0086567,FBtr0290300;parent_type=mRNA" - - - -	6372	14,811,452 – 14,811,552	+	6	101	84.43	-2.34	0.73	0.964966
4643	dm3.chr2R	14,827,208 – 14,827,362	- - - intron="intron;ID=intron_FBgn0034408:5_FBgn0034408:8;Name=sano-in;Parent=FBtr0086566,FBtr0086567,FBtr0290300;parent_type=mRNA" - - - -	6374	14,827,208 – 14,827,302	+	6	113	73.67	-3.25	0.39	0.985265
4643	dm3.chr2R	14,827,208 – 14,827,362		6376	14,827,239 – 14,827,330	+	4	113	79.49	-3.76	0.65	0.998502
4644	dm3.chr2R	14,832,413 – 14,832,569	- - - intron="intron;ID=intron_FBgn0034408:5_FBgn0034408:8;Name=sano-in;Parent=FBtr0086566,FBtr0086567,FBtr0290300;parent_type=mRNA" - - - -	6378	14,832,413 – 14,832,569	-	4	171	81.91	-2.89	0.74	0.990736
4645	dm3.chr2R	14,842,091 – 14,842,205	- - - intron="intron;ID=intron_FBgn0034408:6_FBgn0034408:8;Name=sano-in;Parent=FBtr0086568;parent_type=mRNA" - - - -	6379	14,842,091 – 14,842,205	+	4	128	84.76	-1.85	0.82	0.901145
4646	dm3.chr2R	14,848,716 – 14,848,806	- - - - - - - -	6380	14,848,716 – 14,848,806	+	5	98	72.12	-1.71	0.63	0.960833
4650	dm3.chr2R	14,858,702 – 14,858,767	- - - - - - - -	6385	14,858,702 – 14,858,767	+	5	65	81.99	-3.06	0.72	0.996510
4655	dm3.chr2R	14,877,492 – 14,877,624	- - - intron="intron;ID=intron_FBgn0034412:2_FBgn0034412:4;Name=abba-in;Parent=FBtr0086572,FBtr0114622;parent_type=mRNA" - - - -	6392	14,877,492 – 14,877,598	-	6	109	80.25	-2.03	0.69	0.945844
4657	dm3.chr2R	14,894,578 – 14,894,675	- - - intron="intron;ID=intron_FBgn0034412:12_FBgn0034412:13;Name=abba-in;Parent=FBtr0086573,FBtr0086572,FBtr0114622;parent_type=mRNA" - - - -	6395	14,894,578 – 14,894,675	+	11	106	71.73	-1.62	0.53	0.973473
4658	dm3.chr2R	14,896,801 – 14,896,896	- - - - - - - -	6396	14,896,801 – 14,896,896	-	8	107	56.45	-1.56	0.31	0.910344
4659	dm3.chr2R	14,900,106 – 14,900,201	- - - - - - - -	6397	14,900,106 – 14,900,201	-	11	106	72.91	-1.80	0.46	0.901027
4661	dm3.chr2R	14,903,870 – 14,903,932	- - - - - - - -	6399	14,903,870 – 14,903,932	+	4	62	77.15	-2.36	0.76	0.990625
4661	dm3.chr2R	14,903,870 – 14,903,932	- - - - - - - -	6400	14,903,870 – 14,903,932	-	4	62	77.15	-3.28	0.85	0.998858
4662	dm3.chr2R	14,912,637 – 14,912,731	- - - intron="intron;ID=intron_FBgn0004572:4_FBgn0004572:3;Name=5-HT1B-in;Parent=FBtr0086599;parent_type=mRNA" - - - -	6401	14,912,637 – 14,912,731	+	4	114	67.09	-1.03	0.77	0.914094
4672	dm3.chr2R	14,960,797 – 14,960,913	- - - intron="intron;ID=intron_CG16720:11_CG16720:12;Name=5-HT1A-in;Parent=FBtr0086577;parent_type=mRNA" - - - -	6415	14,960,797 – 14,960,894	-	12	114	66.42	-1.85	0.74	0.998521
4672	dm3.chr2R	14,960,797 – 14,960,913		6416	14,960,818 – 14,960,913	-	12	109	68.51	-2.35	0.68	0.999656
4673	dm3.chr2R	14,961,271 – 14,961,321	- - - intron="intron;ID=intron_CG16720:11_CG16720:12;Name=5-HT1A-in;Parent=FBtr0086577;parent_type=mRNA" - - - -	6417	14,961,271 – 14,961,321	-	5	50	96.00	-2.56	0.92	0.978637
4676	dm3.chr2R	14,974,692 – 14,974,813	- - - intron="intron;ID=intron_CG16720:11_CG16720:12;Name=5-HT1A-in;Parent=FBtr0086577;parent_type=mRNA" - - - -	6422	14,974,709 – 14,974,813	-	8	120	73.33	-2.61	0.43	0.980528
4678	dm3.chr2R	14,980,605 – 14,980,676	- - - intron="intron;ID=intron_CG16720:2_CG16720:3;Name=5-HT1A-in;Parent=FBtr0086578,FBtr0086577;parent_type=mRNA" - - - -	6424	14,980,605 – 14,980,676	-	7	72	57.17	-1.69	0.40	0.993524
4684	dm3.chr2R	15,022,024 – 15,022,185	- - CDS="CDS;ID=CDS_FBgn0034418:2_575;Name=CG15118-cds;Parent=FBtr0113096;parent_type=mRNA" intron="intron;ID=intron_FBgn0034418:3_FBgn0034418:1;Name=CG15118-in;Parent=FBtr0086589,FBtr0086590,FBtr0086591,FBtr0086592;parent_type=mRNA" - - - -	6432	15,022,024 – 15,022,115	-	11	98	75.33	-1.38	0.58	0.907383
4684	dm3.chr2R	15,022,024 – 15,022,185		6433	15,022,078 – 15,022,185	+	9	113	68.63	-1.97	0.38	0.965760
4692	dm3.chr2R	15,061,642 – 15,061,737	- - - intron="intron;ID=intron_FBgn0034420:12_FBgn0034420:13;Name=CG10737-in;Parent=FBtr0086585,FBtr0086588,FBtr0086586,FBtr0100282,FBtr0290311,FBtr0290312,FBtr0290313,FBtr0290314,FBtr0290315,FBtr0290316,FBtr0290317,FBtr0290318;parent_type=mRNA" - - - -	6442	15,061,642 – 15,061,737	+	5	111	66.96	-3.11	0.37	0.995130
4694	dm3.chr2R	15,073,639 – 15,073,691	- - - intron="intron;ID=intron_CG7097:2_CG7097:3;Name=hppy-in;Parent=FBtr0086503,FBtr0086504;parent_type=mRNA" - - - -	6444	15,073,639 – 15,073,691	+	5	53	81.49	-2.03	0.81	0.968348
4695	dm3.chr2R	15,074,710 – 15,074,769	- - - intron="intron;ID=intron_CG7097:2_CG7097:3;Name=hppy-in;Parent=FBtr0086503,FBtr0086504;parent_type=mRNA" - - - -	6445	15,074,710 – 15,074,769	-	5	59	95.93	-2.27	0.94	0.969055
4698	dm3.chr2R	15,088,033 – 15,088,135	- - - intron="intron;ID=intron_CG7097:2_CG7097:3;Name=hppy-in;Parent=FBtr0086503,FBtr0086504;parent_type=mRNA" - - - -	6448	15,088,033 – 15,088,135	-	5	104	86.44	-3.16	0.67	0.984587
4702	dm3.chr2R	15,111,109 – 15,111,199	- - CDS="CDS;ID=CDS_CG7097:17_634;Name=hppy-cds;Parent=FBtr0086504;parent_type=mRNA" - - - - -	6454	15,111,109 – 15,111,199	-	5	90	97.44	-2.02	0.94	0.930138
4709	dm3.chr2R	15,145,928 – 15,146,020	- - - - - - - -	6462	15,145,928 – 15,146,020	-	6	96	87.33	-2.25	0.74	0.914294
4713	dm3.chr2R	15,156,428 – 15,156,574	- - - - - - - -	6467	15,156,428 – 15,156,520	+	7	97	88.01	-2.68	0.67	0.938693
4713	dm3.chr2R	15,156,428 – 15,156,574	- - - - - - - -	6468	15,156,428 – 15,156,520	-	7	97	88.01	-2.98	0.58	0.934542
4715	dm3.chr2R	15,159,867 – 15,159,972	- - - - - - - -	6471	15,159,867 – 15,159,972	+	6	106	79.14	-2.32	0.65	0.983751
4717	dm3.chr2R	15,189,353 – 15,189,447	- - - intron="intron;ID=intron_FBgn0086358:3_FBgn0086358:4;Name=Tab2-in;Parent=FBtr0086516,FBtr0305333;parent_type=mRNA" - - - -	6474	15,189,353 – 15,189,447	+	6	96	75.18	-2.59	0.57	0.994941
4720	dm3.chr2R	15,220,552 – 15,220,665	- - - intron="intron;ID=intron_FBgn0054045:2_FBgn0054045:3;Name=CG34045-in;Parent=FBtr0302390;parent_type=mRNA" - - - -	6477	15,220,552 – 15,220,663	+	5	111	68.97	-2.41	0.42	0.980458
4720	dm3.chr2R	15,220,552 – 15,220,665		6478	15,220,557 – 15,220,665	+	5	108	70.04	-2.37	0.44	0.978089
4721	dm3.chr2R	15,225,701 – 15,225,769	- - - - - - - -	6479	15,225,701 – 15,225,769	+	10	80	69.18	-1.85	0.44	0.956651
4723	dm3.chr2R	15,261,417 – 15,261,483	- - - - - - - -	6481	15,261,417 – 15,261,483	+	6	67	78.99	-2.05	0.65	0.967020
4723	dm3.chr2R	15,261,417 – 15,261,483	- - - - - - - -	6482	15,261,417 – 15,261,483	-	6	67	78.99	-2.13	0.71	0.984973
4727	dm3.chr2R	15,314,687 – 15,314,780	- - CDS="CDS;ID=CDS_FBgn0012051:7_499;Name=CalpA-cds;Parent=FBtr0086530;parent_type=mRNA" - - - - -	6488	15,314,687 – 15,314,780	+	14	109	66.29	-0.90	0.50	0.915964
4729	dm3.chr2R	15,329,738 – 15,329,876	- - - - - - - -	6490	15,329,738 – 15,329,876	+	6	139	73.88	-2.14	0.58	0.989153
4731	dm3.chr2R	15,351,127 – 15,351,200	- - - intron="intron;ID=intron_FBgn0260934:6_FBgn0260934:11;Name=par-1-in;Parent=FBtr0086452,FBtr0086453,FBtr0086454;parent_type=mRNA" - - - -	6493	15,351,127 – 15,351,200	-	4	74	54.11	-2.62	0.32	0.991486
4732	dm3.chr2R	15,354,733 – 15,354,800	- - - - - - - -	6494	15,354,733 – 15,354,800	+	7	72	69.35	-1.47	0.52	0.955889
4735	dm3.chr2R	15,386,073 – 15,386,124	- - - intron="intron;ID=intron_FBgn0034454:2_FBgn0034454:3;Name=CG15120-in;Parent=FBtr0086463;parent_type=mRNA" - - - -	6498	15,386,073 – 15,386,124	-	5	51	97.65	-2.44	0.95	0.978542
4736	dm3.chr2R	15,393,839 – 15,393,923	FBnoncoding="tRNA;ID=FBtr0086498;Name=tRNA:CR30223-RA;Parent=FBgn0050223;Alias=CR30223-RA;Dbxref=FlyBase_Annotation_IDs:CR30223-RA;score_text=Weakly" tRNAscann="His_chr2R_trna67" - - "Rfam_10.0=RF00005;tRNA;AANI01014800.1/19824-19895\|3.7e-34" - - -	6499	15,393,839 – 15,393,923	+	14	87	92.22	-3.00	0.89	0.995261
4736	dm3.chr2R	15,393,839 – 15,393,923		6500	15,393,839 – 15,393,923	-	14	87	92.22	-1.74	0.97	0.965552
4738	dm3.chr2R	15,423,871 – 15,423,981	- - - intron="intron;ID=intron_FBgn0003435:5_FBgn0003435:4;Name=sm-in;Parent=FBtr0086492,FBtr0086495,FBtr0100232,FBtr0110898,FBtr0301609,FBtr0301610,FBtr0304654,FBtr0304653,FBtr0304655,FBtr0304656;parent_type=mRNA" - - - -	6502	15,423,871 – 15,423,981	+	4	119	68.88	-2.22	0.62	0.991209
4738	dm3.chr2R	15,423,871 – 15,423,981		6503	15,423,871 – 15,423,981	-	4	119	68.88	-1.76	0.58	0.939428
4741	dm3.chr2R	15,434,674 – 15,434,733	- - - - - - - -	6506	15,434,674 – 15,434,733	+	6	60	62.34	-1.08	0.48	0.933968
4744	dm3.chr2R	15,446,440 – 15,446,572	- - - - - - - -	6510	15,446,475 – 15,446,572	+	7	108	79.19	-2.95	0.59	0.993391
4744	dm3.chr2R	15,446,440 – 15,446,572	- - - - - - - -	6511	15,446,475 – 15,446,572	-	7	108	79.19	-2.32	0.66	0.977343
4745	dm3.chr2R	15,453,360 – 15,453,420	- - - intron="intron;ID=intron_FBgn0003435:11_FBgn0003435:10;Name=sm-in;Parent=FBtr0110898;parent_type=mRNA" - - - -	6512	15,453,360 – 15,453,420	+	5	61	94.04	-2.26	0.95	0.979343
4751	dm3.chr2R	15,473,940 – 15,474,035	- - - intron="intron;ID=intron_FBgn0003435:15_FBgn0003435:14;Name=sm-in;Parent=FBtr0086492,FBtr0100232,FBtr0301609,FBtr0304654,FBtr0304655,FBtr0304656;parent_type=mRNA" - - - -	6518	15,473,940 – 15,474,035	+	8	98	60.10	-1.07	0.41	0.920383
4753	dm3.chr2R	15,487,061 – 15,487,155	- - - - - - - -	6521	15,487,061 – 15,487,155	+	11	105	87.69	-2.26	0.76	0.937165
4756	dm3.chr2R	15,507,105 – 15,507,214	- - - intron="intron;ID=intron_FBgn0003435:16_FBgn0003435:15;Name=sm-in;Parent=FBtr0086492,FBtr0100232,FBtr0301609,FBtr0304654,FBtr0304655,FBtr0304656;parent_type=mRNA" - - - -	6527	15,507,119 – 15,507,214	+	6	98	83.75	-2.24	0.70	0.937916
4758	dm3.chr2R	15,519,331 – 15,519,561	- - - - - - - -	6529	15,519,331 – 15,519,441	+	3	119	87.68	-2.38	0.81	0.939254
4760	dm3.chr2R	15,547,554 – 15,547,715	- - - - - - - -	6535	15,547,588 – 15,547,682	+	6	113	79.34	-3.06	0.55	0.989794
4761	dm3.chr2R	15,548,204 – 15,548,298	FBnoncoding="pre_miRNA;ID=FBtr0304357;Name=mir-6-3-RM;Parent=FBgn0262418;Alias=CR42966-RM;Dbxref=FlyBase_Annotation_IDs:CR42966-RM,miRBase:MI0000126" - - - "Rfam_10.0=RF00143;mir-6;AAEU02000463.1/591454-591532\|1.6e-30" - - "mirBase_v16=dme-mir-6-3\|2.1e-39"	6538	15,548,204 – 15,548,298	-	12	96	82.79	-3.40	0.73	0.999058
4762	dm3.chr2R	15,548,488 – 15,548,591	FBnoncoding="pre_miRNA;ID=FBtr0304530;Name=mir-6-1-RM;Parent=FBgn0262464;Alias=CR43047-RM;Dbxref=FlyBase_Annotation_IDs:CR43047-RM,miRBase:MI0000124" - - - "Rfam_10.0=RF00143;mir-6;AAST01030396.1/2399-2475\|2.9e-32" - - "mirBase_v16=dme-mir-6-1\|9.7e-42"	6539	15,548,488 – 15,548,591	-	13	119	71.64	-2.96	0.74	0.999751
4763	dm3.chr2R	15,548,643 – 15,548,735	FBnoncoding="pre_miRNA;ID=FBtr0304329;Name=mir-5-RM;Parent=FBgn0262408;Alias=CR42952-RM;Dbxref=FlyBase_Annotation_IDs:CR42952-RM,miRBase:MI0000123" - - - "Rfam_10.0=RF00854;mir-5;AASS01023484.1/3619-3686\|8.9e-23" - - "mirBase_v16=dme-mir-5\|4.9e-34"	6540	15,548,643 – 15,548,735	+	13	117	75.61	-3.28	0.78	0.999484
4763	dm3.chr2R	15,548,643 – 15,548,735		6541	15,548,643 – 15,548,735	-	13	117	75.61	-3.72	0.69	0.999758
4764	dm3.chr2R	15,548,794 – 15,548,885	FBnoncoding="pre_miRNA;ID=FBtr0304347;Name=mir-4-RM;Parent=FBgn0262414;Alias=CR42961-RM;Dbxref=FlyBase_Annotation_IDs:CR42961-RM,miRBase:MI0000122" - - - - - - "mirBase_v16=dme-mir-4\|1.3e-40"	6542	15,548,794 – 15,548,885	+	13	108	85.23	-4.12	0.85	0.999328
4765	dm3.chr2R	15,548,913 – 15,549,031	FBnoncoding="pre_miRNA;ID=FBtr0304444;Name=mir-286-RM;Parent=FBgn0262443;Alias=CR43006-RM;Dbxref=FlyBase_Annotation_IDs:CR43006-RM,miRBase:MI0000380" - - - "Rfam_10.0=RF00789;mir-286;AAPQ01007044.1/1205207-1205305\|3.8e-41" - - "mirBase_v16=dme-mir-286\|2.1e-52"	6544	15,548,913 – 15,549,007	-	13	116	71.98	-1.04	0.68	0.948225
				6545	15,548,934 – 15,549,031	+	12	117	75.90	-1.78	0.54	0.933868
				6546	15,548,934 – 15,549,031	-	12	117	75.90	-2.29	0.77	0.997460
4767	dm3.chr2R	15,561,804 – 15,561,865	- - - - - - - -	6548	15,561,804 – 15,561,865	+	6	73	82.26	-2.01	0.89	0.980882
4768	dm3.chr2R	15,564,837 – 15,564,931	- - - - - - - -	6549	15,564,837 – 15,564,931	+	4	97	91.16	-2.27	1.02	0.993985
4769	dm3.chr2R	15,572,257 – 15,572,383	- - - - - - - -	6551	15,572,257 – 15,572,360	+	9	119	89.87	-2.39	0.94	0.990792
4772	dm3.chr2R	15,590,226 – 15,590,323	- - - - - - - -	6555	15,590,226 – 15,590,323	+	11	99	70.98	-2.03	0.37	0.924535
4774	dm3.chr2R	15,603,250 – 15,603,300	- - - - - - - -	6557	15,603,250 – 15,603,300	+	5	50	93.60	-1.50	0.97	0.901507
4775	dm3.chr2R	15,604,348 – 15,604,399	- - - - - - - -	6558	15,604,348 – 15,604,399	-	3	60	55.00	-2.09	0.60	0.998298
4776	dm3.chr2R	15,614,956 – 15,615,041	FBnoncoding="tRNA;ID=FBtr0086447;Name=tRNA:E4:56Fb-RA;Parent=FBgn0011849;Dbxref=FlyBase_Annotation_IDs:CR30455-RA;score_text=Weakly" tRNAscann="Glu_chr2R_trna63" - - "Rfam_10.0=RF00005;tRNA;AAGE02012517.1/230117-230179\|1.4e-27" - - -	6559	15,614,956 – 15,615,041	+	14	89	74.51	-1.28	0.56	0.954880
4776	dm3.chr2R	15,614,956 – 15,615,041		6560	15,614,956 – 15,615,041	-	14	89	74.51	-1.13	0.73	0.982947
4777	dm3.chr2R	15,618,921 – 15,619,050	FBnoncoding="rRNA;ID=FBtr0086439;Name=5SrRNA:CR33447-RA;Parent=FBgn0053447;Dbxref=FlyBase_Annotation_IDs:CR33447-RA,REFSEQ:NR_001798;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|7.9e-55" - - -	6562	15,618,921 – 15,619,050	-	3	129	79.43	-3.25	0.94	0.998388
4779	dm3.chr2R	15,625,281 – 15,625,350	FBnoncoding="rRNA;ID=FBtr0086422;Name=5SrRNA:CR33430-RA;Parent=FBgn0053430;Dbxref=FlyBase_Annotation_IDs:CR33430-RA,REFSEQ:NR_001815;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|1.7e-32" - - -	6564	15,625,281 – 15,625,350	+	3	69	78.74	-1.38	0.97	0.947391
4780	dm3.chr2R	15,627,092 – 15,627,211	FBnoncoding="rRNA;ID=FBtr0086417;Name=5SrRNA:CR33425-RA;Parent=FBgn0053425;Dbxref=FlyBase_Annotation_IDs:CR33425-RA,REFSEQ:NR_001820;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|4.6e-56" - - -	6566	15,627,092 – 15,627,211	-	3	133	56.88	-2.54	0.33	0.951179
4782	dm3.chr2R	15,632,646 – 15,632,742	FBnoncoding="rRNA;ID=FBtr0086402;Name=5SrRNA:CR33410-RA;Parent=FBgn0053410;Dbxref=FlyBase_Annotation_IDs:CR33410-RA,REFSEQ:NR_001835;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|7.5e-42" - - -	6568	15,632,646 – 15,632,742	+	3	96	72.44	-1.82	0.89	0.981707
4783	dm3.chr2R	15,637,754 – 15,637,892	FBnoncoding="rRNA;ID=FBtr0086388;Name=5SrRNA:CR33396-RA;Parent=FBgn0053396;Dbxref=FlyBase_Annotation_IDs:CR33396-RA,REFSEQ:NR_001849;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|3.5e-57" - - -	6570	15,637,754 – 15,637,892	-	3	138	76.09	-3.47	0.97	0.998712
4784	dm3.chr2R	15,638,505 – 15,638,630	FBnoncoding="rRNA;ID=FBtr0086386;Name=5SrRNA:CR33394-RA;Parent=FBgn0053394;Dbxref=FlyBase_Annotation_IDs:CR33394-RA,REFSEQ:NR_001851;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|3.1e-57" - - -	6571	15,638,505 – 15,638,630	-	4	128	64.03	-2.74	0.50	0.998655
4786	dm3.chr2R	15,640,705 – 15,640,830	FBnoncoding="rRNA;ID=FBtr0086380;Name=5SrRNA:CR33388-RA;Parent=FBgn0053388;Dbxref=FlyBase_Annotation_IDs:CR33388-RA,REFSEQ:NR_001857;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|3.1e-57" - - -	6574	15,640,705 – 15,640,830	-	3	127	78.89	-3.80	0.92	0.999027
4787	dm3.chr2R	15,641,489 – 15,641,552	FBnoncoding="rRNA;ID=FBtr0086378;Name=5SrRNA:CR33386-RA;Parent=FBgn0053386;Dbxref=FlyBase_Annotation_IDs:CR33386-RA,REFSEQ:NR_001859;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|6.1e-29" - - -	6575	15,641,489 – 15,641,552	+	4	75	53.83	-1.57	0.55	0.995569
4788	dm3.chr2R	15,642,217 – 15,642,306	FBnoncoding="rRNA;ID=FBtr0086376;Name=5SrRNA:CR33384-RA;Parent=FBgn0053384;Dbxref=FlyBase_Annotation_IDs:CR33384-RA,REFSEQ:NR_001861;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|4.4e-43" - - -	6577	15,642,217 – 15,642,306	+	3	91	77.49	-1.74	0.90	0.964530
4789	dm3.chr2R	15,642,586 – 15,642,675	FBnoncoding="rRNA;ID=FBtr0086375;Name=5SrRNA:CR33383-RA;Parent=FBgn0053383;Dbxref=FlyBase_Annotation_IDs:CR33383-RA,REFSEQ:NR_001862;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|4.4e-43" - - -	6578	15,642,586 – 15,642,675	+	3	91	77.49	-1.74	0.90	0.964530
4790	dm3.chr2R	15,642,896 – 15,643,029	FBnoncoding="rRNA;ID=FBtr0086374;Name=5SrRNA:CR33382-RA;Parent=FBgn0053382;Dbxref=FlyBase_Annotation_IDs:CR33382-RA,REFSEQ:NR_001863;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|1.9e-49" - - -	6580	15,642,896 – 15,643,029	-	3	135	67.75	-1.12	0.81	0.905331
4792	dm3.chr2R	15,645,924 – 15,645,987	FBnoncoding="rRNA;ID=FBtr0086366;Name=5SrRNA:CR33374-RA;Parent=FBgn0053374;Dbxref=FlyBase_Annotation_IDs:CR33374-RA,REFSEQ:NR_001871;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|6.1e-29" - - -	6583	15,645,924 – 15,645,987	+	3	65	77.20	-1.77	0.97	0.982045
4793	dm3.chr2R	15,648,520 – 15,648,626	FBnoncoding="rRNA;ID=FBtr0086359;Name=5SrRNA:CR33367-RA;Parent=FBgn0053367;Dbxref=FlyBase_Annotation_IDs:CR33367-RA,REFSEQ:NR_001878;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|2.1e-39" - - -	6584	15,648,520 – 15,648,626	+	3	106	67.33	-1.79	0.79	0.979581
4794	dm3.chr2R	15,650,355 – 15,650,443	FBnoncoding="rRNA;ID=FBtr0086354;Name=5SrRNA:CR33362-RA;Parent=FBgn0053362;Dbxref=FlyBase_Annotation_IDs:CR33362-RA,REFSEQ:NR_001883;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|1.7e-42" - - -	6586	15,650,355 – 15,650,443	+	3	88	81.06	-1.97	1.01	0.990616
4795	dm3.chr2R	15,652,599 – 15,652,654	- - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|3.0e-24" - - -	6587	15,652,599 – 15,652,654	+	3	55	75.31	-2.11	0.85	0.983968
4796	dm3.chr2R	15,659,562 – 15,659,675	- - - - - - - -	6590	15,659,576 – 15,659,675	-	12	117	81.81	-2.77	0.69	0.994907
4798	dm3.chr2R	15,672,939 – 15,673,044	- - - - - - - -	6593	15,672,939 – 15,673,044	-	7	119	65.79	-2.48	0.38	0.991652
4801	dm3.chr2R	15,682,336 – 15,682,451	- - - - - - - -	6596	15,682,336 – 15,682,432	-	9	97	72.36	-1.19	0.57	0.914421
4803	dm3.chr2R	15,690,095 – 15,690,195	FBnoncoding="tRNA;ID=FBtr0086334;Name=tRNA:K2:56EF-RA;Parent=FBgn0011897;Dbxref=FlyBase_Annotation_IDs:CR30520-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna40" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|1.1e-28" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|9.1e-17" "unique_Noncode_2.0=u201439_mRNAlike\|7.9e-17" -	6599	15,690,095 – 15,690,195	+	11	103	88.26	-2.04	0.97	0.988475
4803	dm3.chr2R	15,690,095 – 15,690,195		6600	15,690,095 – 15,690,195	-	11	103	88.26	-2.73	0.95	0.996580
4806	dm3.chr2R	15,694,673 – 15,694,788	- - - - - - - -	6603	15,694,673 – 15,694,774	+	11	119	81.80	-2.11	0.68	0.950525
4808	dm3.chr2R	15,710,095 – 15,710,208	- - - - - - - -	6607	15,710,095 – 15,710,199	+	8	114	76.29	-1.73	0.55	0.900586
4812	dm3.chr2R	15,722,126 – 15,722,242	- - - - - - - -	6613	15,722,126 – 15,722,242	-	9	118	83.75	-2.22	0.75	0.977748
4814	dm3.chr2R	15,734,666 – 15,734,740	- - - - - - - -	6615	15,734,666 – 15,734,740	-	4	76	59.59	-1.34	0.50	0.949969
4816	dm3.chr2R	15,738,449 – 15,738,543	- - - - - - - -	6617	15,738,449 – 15,738,540	+	4	107	58.71	-2.40	0.39	0.992104
4816	dm3.chr2R	15,738,449 – 15,738,543	- - - - - - - -	6618	15,738,449 – 15,738,543	+	4	104	60.53	-1.97	0.40	0.962755
4817	dm3.chr2R	15,744,864 – 15,744,959	- - - - - - - -	6619	15,744,864 – 15,744,959	-	7	107	74.72	-1.84	0.54	0.925450
4822	dm3.chr2R	15,778,562 – 15,778,703	- - - - - - - -	6624	15,778,562 – 15,778,678	+	11	118	77.19	-2.28	0.61	0.994550
				6625	15,778,562 – 15,778,678	-	11	118	77.19	-2.48	0.60	0.996696
				6626	15,778,599 – 15,778,703	+	8	114	76.62	-3.94	0.59	0.999771
				6627	15,778,599 – 15,778,703	-	8	114	76.62	-3.24	0.62	0.999275
4834	dm3.chr2R	15,871,609 – 15,871,702	- - - - - - - -	6640	15,871,609 – 15,871,702	+	6	99	72.98	-2.79	0.55	0.997663
4834	dm3.chr2R	15,871,609 – 15,871,702	- - - - - - - -	6641	15,871,609 – 15,871,702	-	6	99	72.98	-2.56	0.55	0.995436
4836	dm3.chr2R	15,879,622 – 15,879,752	- - - - - - - -	6643	15,879,622 – 15,879,724	+	11	115	75.43	-1.81	0.60	0.977757
4836	dm3.chr2R	15,879,622 – 15,879,752	- - - - - - - -	6644	15,879,650 – 15,879,752	+	11	121	73.33	-2.01	0.46	0.922843
4841	dm3.chr2R	15,910,427 – 15,910,522	- - - - - - - -	6649	15,910,427 – 15,910,522	-	5	95	84.76	-3.44	0.51	0.970257
4844	dm3.chr2R	15,928,302 – 15,928,433	- - - - - - - -	6653	15,928,302 – 15,928,402	-	10	119	62.48	-2.47	0.40	0.998130
4845	dm3.chr2R	15,934,308 – 15,934,410	- - - - - - - -	6655	15,934,308 – 15,934,410	+	11	120	83.05	-2.44	0.61	0.947912
4845	dm3.chr2R	15,934,308 – 15,934,410	- - - - - - - -	6656	15,934,308 – 15,934,410	-	11	120	83.05	-1.96	0.78	0.958490
4848	dm3.chr2R	15,942,985 – 15,943,044	- - - - - - - -	6659	15,942,985 – 15,943,044	+	5	66	77.93	-1.89	0.74	0.957314
4849	dm3.chr2R	15,951,363 – 15,951,454	- - - - - - - -	6660	15,951,363 – 15,951,454	+	9	112	77.56	-1.51	0.75	0.912059
4850	dm3.chr2R	15,955,134 – 15,955,271	- - - - - - - -	6663	15,955,166 – 15,955,271	+	12	117	81.88	-1.96	0.66	0.923311
4854	dm3.chr2R	15,979,611 – 15,979,705	- - - - - - - -	6668	15,979,611 – 15,979,705	+	10	112	72.31	-1.77	0.51	0.927486
4856	dm3.chr2R	15,982,328 – 15,982,436	- - - - - - - -	6671	15,982,328 – 15,982,436	+	11	110	73.43	-1.76	0.56	0.988766
4862	dm3.chr2R	16,069,399 – 16,069,490	- - - - - - - -	6682	16,069,399 – 16,069,490	-	9	105	68.91	-2.26	0.48	0.994902
4864	dm3.chr2R	16,074,994 – 16,075,101	- - - - - - - -	6684	16,074,994 – 16,075,101	+	8	123	73.45	-1.73	0.61	0.940215
4864	dm3.chr2R	16,074,994 – 16,075,101	- - - - - - - -	6685	16,074,994 – 16,075,101	-	8	123	73.45	-2.25	0.60	0.987796
4865	dm3.chr2R	16,077,298 – 16,077,405	- - - - - - - -	6686	16,077,298 – 16,077,389	+	8	100	84.97	-2.29	0.89	0.990420
				6687	16,077,298 – 16,077,389	-	8	100	84.97	-1.88	0.90	0.975310
				6688	16,077,314 – 16,077,405	+	11	111	85.63	-4.27	0.80	0.999398
				6689	16,077,314 – 16,077,405	-	11	111	85.63	-1.87	0.81	0.931152
4867	dm3.chr2R	16,086,201 – 16,086,354	- - - - - - - -	6692	16,086,232 – 16,086,332	+	6	109	73.96	-2.07	0.53	0.971352
4867	dm3.chr2R	16,086,201 – 16,086,354	- - - - - - - -	6694	16,086,252 – 16,086,354	+	5	109	93.05	-2.08	0.93	0.959658
4869	dm3.chr2R	16,101,416 – 16,101,513	- - - - - - - -	6696	16,101,416 – 16,101,513	+	9	110	70.25	-1.73	0.49	0.955915
4871	dm3.chr2R	16,108,442 – 16,108,560	- - - - - - - -	6699	16,108,442 – 16,108,534	-	9	93	73.49	-1.30	0.75	0.979326
4873	dm3.chr2R	16,116,169 – 16,116,232	- - - - - - - -	6702	16,116,169 – 16,116,232	-	9	76	91.19	-2.35	0.86	0.963937
4874	dm3.chr2R	16,116,985 – 16,117,090	FBnoncoding="tRNA;ID=FBtr0086312;Name=tRNA:G3:56EFa-RA;Parent=FBgn0011869;Dbxref=FlyBase_Annotation_IDs:CR30214-RA;score_text=Weakly" tRNAscann="Gly_chr2R_trna42" - - "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|4.6e-31" - - -	6703	16,116,985 – 16,117,090	+	14	112	70.25	-1.70	0.80	0.998591
4874	dm3.chr2R	16,116,985 – 16,117,090		6704	16,116,985 – 16,117,090	-	14	112	70.25	-1.49	0.81	0.997643
4875	dm3.chr2R	16,117,527 – 16,117,729	- - - - - - - -	6705	16,117,527 – 16,117,622	+	8	110	71.74	-2.74	0.48	0.995957
				6706	16,117,527 – 16,117,622	-	8	110	71.74	-2.68	0.54	0.997710
				6707	16,117,527 – 16,117,623	+	9	112	68.35	-2.51	0.35	0.977938
				6708	16,117,527 – 16,117,623	-	9	112	68.35	-2.48	0.44	0.995596
				6709	16,117,623 – 16,117,729	-	6	109	73.01	-1.25	0.68	0.939463
4876	dm3.chr2R	16,120,289 – 16,120,383	FBnoncoding="tRNA;ID=FBtr0086314;Name=tRNA:G3:56EFb-RA;Parent=FBgn0011870;Dbxref=FlyBase_Annotation_IDs:CR30138-RA;score_text=Weakly" tRNAscann="Gly_chr2R_trna43" - intron="intron;ID=intron_CG11044:2_CG11044:3;Name=CG11044-in;Parent=FBtr0086313;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|1.0e-31" - - -	6710	16,120,289 – 16,120,383	+	14	100	76.70	-1.96	0.92	0.994750
4876	dm3.chr2R	16,120,289 – 16,120,383		6711	16,120,289 – 16,120,383	-	14	100	76.70	-1.27	0.87	0.976073
4877	dm3.chr2R	16,123,918 – 16,124,054	- - - - - - - -	6715	16,123,941 – 16,124,054	-	5	113	99.29	-2.28	0.98	0.976847
4882	dm3.chr2R	16,191,750 – 16,191,841	- - - - - - - -	6720	16,191,750 – 16,191,841	+	3	91	86.36	-2.53	0.83	0.971992
4883	dm3.chr2R	16,196,972 – 16,197,077	- - - - - - - -	6721	16,196,972 – 16,197,077	+	11	112	68.91	-1.21	0.53	0.969606
4883	dm3.chr2R	16,196,972 – 16,197,077	- - - - - - - -	6722	16,196,972 – 16,197,077	-	11	112	68.91	-2.81	0.63	0.999866
4884	dm3.chr2R	16,198,944 – 16,199,044	- - - - - - - -	6723	16,198,944 – 16,199,044	-	14	115	67.35	-0.85	0.52	0.900621
4892	dm3.chr2R	16,249,121 – 16,249,212	- - - - - - - -	6731	16,249,121 – 16,249,212	+	10	103	65.22	-2.42	0.24	0.937235
4893	dm3.chr2R	16,251,212 – 16,251,317	- - - - - - - -	6732	16,251,212 – 16,251,317	+	6	107	88.69	-2.37	0.73	0.902247
4896	dm3.chr2R	16,256,499 – 16,256,576	- - - - - - - -	6736	16,256,499 – 16,256,576	+	4	81	50.00	-1.33	0.40	0.959114
4896	dm3.chr2R	16,256,499 – 16,256,576	- - - - - - - -	6737	16,256,499 – 16,256,576	-	4	81	50.00	-0.92	0.50	0.971399
4897	dm3.chr2R	16,268,455 – 16,268,565	- - - - - - - -	6738	16,268,455 – 16,268,565	+	5	110	85.29	-2.51	0.68	0.928624
4901	dm3.chr2R	16,281,199 – 16,281,253	- - - - - - - -	6742	16,281,199 – 16,281,253	-	5	54	96.66	-1.91	0.97	0.948741
4907	dm3.chr2R	16,297,975 – 16,298,088	- - - - - - - -	6748	16,297,975 – 16,298,088	-	5	113	78.99	-1.41	0.84	0.913942
4908	dm3.chr2R	16,311,596 – 16,311,698	- - - - - - - -	6749	16,311,596 – 16,311,698	+	6	105	74.76	-2.21	0.55	0.980888
4910	dm3.chr2R	16,318,220 – 16,318,271	- - - intron="intron;ID=intron_FBgn0086604:2_FBgn0086604:3;Name=CG12484-in;Parent=FBtr0112774,FBtr0112775,FBtr0112776;parent_type=mRNA" - - - -	6753	16,318,220 – 16,318,271	-	6	64	78.43	-2.38	0.82	0.992777
4913	dm3.chr2R	16,339,487 – 16,339,585	- - - intron="intron;ID=intron_FBgn0086604:3_FBgn0086604:4;Name=CG12484-in;Parent=FBtr0112774,FBtr0112775,FBtr0112776;parent_type=mRNA" - - - -	6757	16,339,487 – 16,339,581	-	6	96	90.35	-2.66	0.77	0.960987
4915	dm3.chr2R	16,375,207 – 16,375,306	- - - - - - - -	6760	16,375,207 – 16,375,306	-	8	108	67.15	-1.92	0.56	0.997208
4918	dm3.chr2R	16,413,076 – 16,413,131	- - - - - - - -	6764	16,413,076 – 16,413,131	+	6	55	87.01	-1.68	0.88	0.910644
4923	dm3.chr2R	16,449,457 – 16,449,661	- - - - - - - -	6770	16,449,484 – 16,449,600	-	6	116	78.07	-2.10	0.68	0.983714
4924	dm3.chr2R	16,456,157 – 16,456,259	- - - intron="intron;ID=intron_CG13432:2_CG13432:3;Name=l(2)05510-in;Parent=FBtr0086258;parent_type=mRNA" - - - -	6772	16,456,157 – 16,456,259	-	8	103	81.92	-2.40	0.77	0.986927
4930	dm3.chr2R	16,472,820 – 16,472,912	FBnoncoding="pre_miRNA;ID=FBtr0304516;Name=mir-992-RM;Parent=FBgn0262334;Alias=CR43041-RM;Dbxref=FlyBase_Annotation_IDs:CR43041-RM,miRBase:MI0005852" - - - - - - "mirBase_v16=dme-mir-992\|1.4e-46"	6779	16,472,820 – 16,472,912	-	7	106	53.81	-2.82	0.13	0.939943
4931	dm3.chr2R	16,493,582 – 16,493,653	FBnoncoding="pre_miRNA;ID=FBtr0304180;Name=mir-7-RM;Parent=FBgn0262370;Alias=CR42883-RM;Dbxref=FlyBase_Annotation_IDs:CR42883-RM,miRBase:MI0000127" - - intron="intron;ID=intron_FBgn0015907:11_FBgn0015907:13;Name=bl-in;Parent=FBtr0301760;parent_type=mRNA" "Rfam_10.0=RF00053;mir-7;AAPT01021600.1/45421-45508\|6.7e-26" "Noncode_2.0=n178689_u177787_NW_045804_miRNA_Anopheles\|5.5e-11" "unique_Noncode_2.0=u177787_miRNA_Anopheles\|4.8e-11" "mirBase_v16=dya-mir-7\|2.3e-35"	6780	16,493,582 – 16,493,653	+	15	90	84.66	-3.37	0.85	0.998495
4931	dm3.chr2R	16,493,582 – 16,493,653		6781	16,493,582 – 16,493,653	-	15	90	84.66	-2.88	0.77	0.994573
4933	dm3.chr2R	16,504,358 – 16,504,462	- - - intron="intron;ID=intron_CG30147:1_CG30147:2;Name=Hil-in;Parent=FBtr0086255;parent_type=mRNA" - - - -	6783	16,504,358 – 16,504,462	-	11	117	72.57	-2.47	0.50	0.997334
4934	dm3.chr2R	16,505,726 – 16,505,801	- - - - - - - -	6784	16,505,726 – 16,505,801	-	6	77	77.09	-1.80	0.59	0.903586
4935	dm3.chr2R	16,506,058 – 16,506,157	- - - - - - - -	6785	16,506,058 – 16,506,157	+	5	113	77.06	-2.15	0.75	0.983395
4941	dm3.chr2R	16,592,303 – 16,592,400	- - - intron="intron;ID=intron_FBgn0040726:1_FBgn0040726:2;Name=dpr-in;Parent=FBtr0086238;parent_type=mRNA" - - - -	6792	16,592,303 – 16,592,400	-	8	109	75.13	-1.31	0.68	0.931230
4942	dm3.chr2R	16,607,673 – 16,607,797	- - - intron="intron;ID=intron_FBgn0040726:1_FBgn0040726:2;Name=dpr-in;Parent=FBtr0086238;parent_type=mRNA" - - - -	6794	16,607,702 – 16,607,797	+	8	118	70.21	-2.48	0.55	0.995525
4943	dm3.chr2R	16,608,375 – 16,608,476	- - - intron="intron;ID=intron_FBgn0040726:1_FBgn0040726:2;Name=dpr-in;Parent=FBtr0086238;parent_type=mRNA" - - - -	6795	16,608,375 – 16,608,476	+	10	114	75.16	-2.41	0.69	0.997478
4945	dm3.chr2R	16,617,844 – 16,617,943	- - CDS="CDS;ID=CDS_CG13442:2_518;Name=CG13442-cds;Parent=FBtr0086240;parent_type=mRNA" - - - - -	6797	16,617,844 – 16,617,943	+	6	101	76.34	-2.59	0.58	0.994116
4945	dm3.chr2R	16,617,844 – 16,617,943		6798	16,617,844 – 16,617,943	-	6	101	76.34	-2.80	0.58	0.996804
4947	dm3.chr2R	16,619,648 – 16,619,739	- - - - - - - -	6800	16,619,648 – 16,619,739	+	12	114	79.01	-1.75	0.71	0.939354
4948	dm3.chr2R	16,624,607 – 16,624,702	- - - intron="intron;ID=intron_FBgn0040726:4_FBgn0040726:5;Name=dpr-in;Parent=FBtr0086238;parent_type=mRNA" - - - -	6802	16,624,607 – 16,624,702	-	10	119	72.78	-1.70	0.56	0.957800
4951	dm3.chr2R	16,640,878 – 16,640,975	- - CDS="CDS;ID=CDS_FBgn0085231:2_575;Name=CG34202-cds;Parent=FBtr0112395;parent_type=mRNA" - - - - -	6806	16,640,878 – 16,640,975	-	7	97	70.36	-2.82	0.36	0.983776
4952	dm3.chr2R	16,646,663 – 16,646,768	- - - - - - - -	6807	16,646,663 – 16,646,759	+	9	115	70.73	-2.31	0.44	0.970642
4952	dm3.chr2R	16,646,663 – 16,646,768	- - - - - - - -	6808	16,646,668 – 16,646,768	+	9	109	69.21	-2.26	0.39	0.974084
4953	dm3.chr2R	16,653,028 – 16,653,105	- - - - - - - -	6809	16,653,028 – 16,653,105	+	10	83	75.18	-1.98	0.59	0.983040
4955	dm3.chr2R	16,660,199 – 16,660,298	- - - - - - - -	6812	16,660,199 – 16,660,298	+	4	99	78.17	-1.88	0.77	0.938137
4956	dm3.chr2R	16,660,901 – 16,660,959	- - - - - - - -	6814	16,660,901 – 16,660,959	-	7	60	74.17	-2.04	0.43	0.920178
4957	dm3.chr2R	16,678,296 – 16,678,354	- - - intron="intron;ID=intron_FBgn0034550:3_FBgn0034550:2;Name=CG15226-in;Parent=FBtr0071564;parent_type=mRNA" - - - -	6815	16,678,296 – 16,678,354	+	5	58	75.30	-1.66	0.75	0.968747
4968	dm3.chr2R	16,705,080 – 16,705,131	- - - - - - - -	6826	16,705,080 – 16,705,131	-	4	51	93.79	-2.06	0.94	0.957750
4970	dm3.chr2R	16,722,375 – 16,722,506	- - - - - - - -	6829	16,722,408 – 16,722,506	+	5	117	69.03	-2.23	0.71	0.996848
4970	dm3.chr2R	16,722,375 – 16,722,506	- - - - - - - -	6830	16,722,408 – 16,722,506	-	5	117	69.03	-2.23	0.52	0.983041
4974	dm3.chr2R	16,751,604 – 16,751,678	- - - - - - - -	6834	16,751,604 – 16,751,678	-	6	93	84.72	-1.93	0.80	0.900786
4975	dm3.chr2R	16,786,056 – 16,786,110	FBnoncoding="ncRNA;ID=FBtr0305615;Name=CR43160-RA;Parent=FBgn0262690;Dbxref=FlyBase_Annotation_IDs:CR43160-RA;score_text=Strongly" - - - - - - -	6835	16,786,056 – 16,786,110	+	7	61	81.19	-4.21	0.54	0.999318
4977	dm3.chr2R	16,803,175 – 16,803,266	- - - - - - - -	6837	16,803,175 – 16,803,266	-	4	106	72.71	-2.56	0.53	0.972071
4978	dm3.chr2R	16,819,861 – 16,819,971	- - - intron="intron;ID=intron_CG10052:4_CG10052:5;Name=Rx-in;Parent=FBtr0071518;parent_type=mRNA" - - - -	6839	16,819,861 – 16,819,970	-	11	120	75.38	-2.44	0.45	0.961213
				6840	16,819,862 – 16,819,971	+	11	120	75.50	-1.68	0.57	0.910077
				6841	16,819,862 – 16,819,971	-	11	120	75.50	-2.47	0.45	0.964671
4980	dm3.chr2R	16,820,767 – 16,820,867	- - - intron="intron;ID=intron_CG10052:4_CG10052:5;Name=Rx-in;Parent=FBtr0071518;parent_type=mRNA" - - - -	6843	16,820,767 – 16,820,867	+	10	114	82.98	-2.20	0.75	0.975442
4981	dm3.chr2R	16,828,740 – 16,828,849	- - - - - - - -	6844	16,828,740 – 16,828,849	+	11	120	63.87	-0.96	0.55	0.984978
4992	dm3.chr2R	16,983,547 – 16,983,601	- - - intron="intron;ID=intron_FBgn0085425:3_FBgn0085425:6;Name=CG34396-in;Parent=FBtr0112644;parent_type=mRNA" - - - -	6856	16,983,547 – 16,983,601	-	4	54	87.23	-2.75	0.94	0.995424
4996	dm3.chr2R	17,020,891 – 17,020,985	- - - intron="intron;ID=intron_CG30388:2_CG30388:3;Name=Magi-in;Parent=FBtr0071636;parent_type=mRNA" - - - -	6862	17,020,891 – 17,020,985	-	6	96	76.78	-1.81	0.70	0.973679
5000	dm3.chr2R	17,031,936 – 17,032,027	- - CDS="CDS;ID=CDS_FBgn0021872:2_575;Name=Xbp1-cds;Parent=FBtr0300236;parent_type=mRNA" - - - - -	6867	17,031,936 – 17,032,027	+	13	112	68.17	-1.43	0.53	0.978326
5001	dm3.chr2R	17,042,966 – 17,043,081	- - - - - - - -	6868	17,042,966 – 17,043,081	-	11	122	69.39	-1.08	0.55	0.958127
5003	dm3.chr2R	17,055,566 – 17,055,713	- - CDS="CDS;ID=CDS_FBgn0034598:9_578;Name=CG4266-cds;Parent=FBtr0113100;parent_type=mRNA" - - - - -	6871	17,055,566 – 17,055,713	+	14	161	75.47	-2.00	0.44	0.914741
5004	dm3.chr2R	17,068,465 – 17,068,557	- - - intron="intron;ID=intron_CG9441:2_CG9441:3;Name=Pu-in;Parent=FBtr0071578,FBtr0071579,FBtr0071580;parent_type=mRNA" - - - -	6872	17,068,465 – 17,068,557	+	6	99	68.72	-2.55	0.53	0.998819
5006	dm3.chr2R	17,070,358 – 17,070,433	FBnoncoding="tRNA;ID=FBtr0071581;Name=tRNA:G3:57BCb-RA;Parent=FBgn0011872;Dbxref=FlyBase_Annotation_IDs:CR30210-RA;score_text=Weakly" tRNAscann="Gly_chr2R_trna47" - - "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|7.7e-32" "Noncode_2.0=n122145_u121243_DQ595536_piRNA_human\|8.9e-07" "unique_Noncode_2.0=u121243_piRNA_human\|7.7e-07" -	6876	17,070,358 – 17,070,433	+	14	83	79.28	-1.68	0.81	0.987718
5006	dm3.chr2R	17,070,358 – 17,070,433		6877	17,070,358 – 17,070,433	-	14	83	79.28	-1.86	0.80	0.992199
5011	dm3.chr2R	17,092,114 – 17,092,251	- - CDS="CDS;ID=CDS_FBgn0034603:2_635;Name=Glycogenin-cds;Parent=FBtr0089601;parent_type=mRNA" - - - - -	6884	17,092,154 – 17,092,251	+	14	120	75.57	-1.34	0.67	0.905291
5016	dm3.chr2R	17,111,852 – 17,111,953	- - - - - - - -	6890	17,111,852 – 17,111,953	-	9	117	69.58	-2.00	0.50	0.987356
5022	dm3.chr2R	17,142,620 – 17,142,713	- - - - - - - -	6896	17,142,620 – 17,142,713	-	8	94	79.26	-2.33	0.57	0.966504
5024	dm3.chr2R	17,163,425 – 17,163,523	- - - intron="intron;ID=intron_FBgn0085426:5_FBgn0085426:6;Name=Rgk3-in;Parent=FBtr0112646,FBtr0305983;parent_type=mRNA" - - - -	6899	17,163,425 – 17,163,523	+	11	119	63.64	-4.31	0.17	0.998391
5024	dm3.chr2R	17,163,425 – 17,163,523		6900	17,163,425 – 17,163,523	-	11	119	63.64	-3.86	0.18	0.995994
5026	dm3.chr2R	17,185,496 – 17,185,569	- - - intron="intron;ID=intron_FBgn0261554:1_FBgn0261554:5;Name=CG42672-in;Parent=FBtr0302702,FBtr0302701;parent_type=mRNA" - - - -	6902	17,185,496 – 17,185,569	+	9	81	68.76	-1.09	0.63	0.974533
5028	dm3.chr2R	17,211,690 – 17,211,799	- - CDS="CDS;ID=CDS_FBgn0020306:3_585;Name=dom-cds;Parent=FBtr0071602,FBtr0071603,FBtr0071604;parent_type=mRNA" - - - - -	6905	17,211,690 – 17,211,799	-	12	110	87.63	-2.41	0.75	0.972967
5029	dm3.chr2R	17,212,695 – 17,212,794	FBnoncoding="snoRNA;ID=FBtr0114299;Name=snoRNA:Me28S-A2589a-RA;Parent=FBgn0086023;Dbxref=FlyBase_Annotation_IDs:CR34652-RA,REFSEQ:NR_003810;score_text=Weakly" - - intron="intron;ID=intron_FBgn0020306:4_FBgn0020306:5;Name=dom-in;Parent=FBtr0071602,FBtr0071603,FBtr0071604,FBtr0301350;parent_type=mRNA" "Rfam_10.0=RF00529;snoMe28S-Am2589;AAGH01006569.1/1638-1746\|2.7e-29" - - -	6906	17,212,695 – 17,212,794	+	8	99	75.18	-2.63	0.60	0.996471
5032	dm3.chr2R	17,228,316 – 17,228,413	- - CDS="CDS;ID=CDS_FBgn0020306:17_585;Name=dom-cds;Parent=FBtr0071602;parent_type=mRNA" - - - - -	6910	17,228,316 – 17,228,413	+	7	117	76.43	-2.47	0.68	0.994151
5034	dm3.chr2R	17,256,139 – 17,256,245	- - - intron="intron;ID=intron_FBgn0000395:7_FBgn0000395:6;Name=cv-2-in;Parent=FBtr0071610;parent_type=mRNA" - - - -	6913	17,256,139 – 17,256,245	+	6	114	78.22	-2.00	0.63	0.938648
5034	dm3.chr2R	17,256,139 – 17,256,245		6914	17,256,139 – 17,256,245	-	6	114	78.22	-2.02	0.61	0.931197
5037	dm3.chr2R	17,300,502 – 17,300,596	- - - intron="intron;ID=intron_FBgn0010415:11_FBgn0010415:10;Name=Sdc-in;Parent=FBtr0305897;parent_type=mRNA" - - - -	6917	17,300,502 – 17,300,596	+	6	104	75.58	-2.83	0.56	0.996127
5037	dm3.chr2R	17,300,502 – 17,300,596		6918	17,300,502 – 17,300,596	-	6	104	75.58	-2.50	0.52	0.982548
5040	dm3.chr2R	17,302,841 – 17,302,899	- - - intron="intron;ID=intron_FBgn0010415:11_FBgn0010415:10;Name=Sdc-in;Parent=FBtr0305897;parent_type=mRNA" - - - -	6922	17,302,841 – 17,302,899	+	5	59	77.40	-1.46	0.84	0.940549
5041	dm3.chr2R	17,314,387 – 17,314,438	- - - - - - - -	6924	17,314,387 – 17,314,438	-	5	52	94.55	-1.18	1.02	0.902013
5042	dm3.chr2R	17,331,338 – 17,331,392	- - - - - - - -	6925	17,331,338 – 17,331,392	+	5	55	70.59	-1.91	0.45	0.912596
5043	dm3.chr2R	17,340,979 – 17,341,084	- - - - - - - -	6926	17,340,979 – 17,341,084	-	6	105	92.32	-2.20	0.87	0.943519
5044	dm3.chr2R	17,343,510 – 17,343,617	- - - - - - - -	6928	17,343,510 – 17,343,617	-	6	113	89.28	-2.95	0.70	0.969884
5050	dm3.chr2R	17,355,247 – 17,355,301	- - - - - - - -	6934	17,355,247 – 17,355,301	-	3	54	96.30	-2.32	1.00	0.988775
5053	dm3.chr2R	17,367,444 – 17,367,552	- - - - - - - -	6937	17,367,444 – 17,367,552	+	6	117	60.45	-2.03	0.38	0.984631
5054	dm3.chr2R	17,376,282 – 17,376,352	- - - intron="intron;ID=intron_FBgn0010470:6_FBgn0010470:5;Name=Fkbp13-in;Parent=FBtr0071703,FBtr0300397,FBtr0306013;parent_type=mRNA" - - - -	6938	17,376,282 – 17,376,352	+	5	72	92.98	-2.57	0.79	0.916497
5060	dm3.chr2R	17,425,276 – 17,425,336	- - CDS="CDS;ID=CDS_FBgn0050287:4_575;Name=CG30287-cds;Parent=FBtr0071695;parent_type=mRNA" - - - - -	6945	17,425,276 – 17,425,336	+	6	60	76.00	-2.32	0.79	0.996939
5061	dm3.chr2R	17,428,071 – 17,428,202	- - - - - - - -	6946	17,428,071 – 17,428,202	-	5	142	67.78	-2.49	0.42	0.984755
5062	dm3.chr2R	17,428,581 – 17,428,669	- - - - - - - -	6947	17,428,581 – 17,428,669	+	6	97	62.57	-1.95	0.36	0.954557
5064	dm3.chr2R	17,439,281 – 17,439,398	- - - intron="intron;ID=intron_CG10079:1_CG10079:2;Name=Egfr-in;Parent=FBtr0071654;parent_type=mRNA" - - - -	6951	17,439,308 – 17,439,398	+	5	90	98.00	-3.65	0.97	0.997816
5067	dm3.chr2R	17,483,984 – 17,484,050	- - - - - - - -	6955	17,483,984 – 17,484,050	+	3	67	65.96	-2.55	0.56	0.989421
5068	dm3.chr2R	17,498,563 – 17,498,672	- - - intron="intron;ID=intron_FBgn0034639:3_FBgn0034639:2;Name=CG15673-in;Parent=FBtr0300355;parent_type=mRNA" - - - -	6957	17,498,563 – 17,498,672	+	5	113	80.45	-2.68	0.54	0.937956
5069	dm3.chr2R	17,510,346 – 17,510,449	- - CDS="CDS;ID=CDS_CG9856:1_500;Name=PTP-ER-cds;Parent=FBtr0071686;parent_type=mRNA" - - - - -	6958	17,510,346 – 17,510,449	+	10	109	63.55	-1.36	0.42	0.964115
5069	dm3.chr2R	17,510,346 – 17,510,449		6959	17,510,346 – 17,510,449	-	10	109	63.55	-1.53	0.42	0.981059
5070	dm3.chr2R	17,511,912 – 17,512,067	- - - - - - - -	6960	17,511,912 – 17,512,067	-	5	156	82.57	-1.86	0.82	0.942836
5072	dm3.chr2R	17,525,388 – 17,525,478	- - - - - - - -	6962	17,525,388 – 17,525,478	+	11	93	77.72	-1.95	0.63	0.974138
5082	dm3.chr2R	17,602,150 – 17,602,252	- - - intron="intron;ID=intron_FBgn0004362:2_FBgn0004362:3;Name=HmgD-in;Parent=FBtr0071709;parent_type=mRNA" - - - -	6975	17,602,150 – 17,602,252	-	9	114	69.72	-1.82	0.48	0.968828
5084	dm3.chr2R	17,609,032 – 17,609,173	- - - intron="intron;ID=intron_CG17952:4_CG17952:2;Name=LBR-in;Parent=FBtr0071711,FBtr0071712;parent_type=mRNA" - - - -	6977	17,609,032 – 17,609,133	+	6	108	68.14	-1.75	0.52	0.979498
5088	dm3.chr2R	17,669,856 – 17,669,947	- - - - - - - -	6983	17,669,856 – 17,669,947	-	4	97	52.94	-2.62	0.35	0.997583
5095	dm3.chr2R	17,735,889 – 17,736,037	FBnoncoding="tRNA;ID=FBtr0071736;Name=tRNA:CR30406-RA;Parent=FBgn0050406;Alias=CR30406-RA;Dbxref=FlyBase_Annotation_IDs:CR30406-RA;score_text=Weakly" tRNAscann="Gly_chr2R_trna54" - - "Rfam_10.0=RF00005;tRNA;ABJB010436523.1/406-477\|6.2e-22" - - -	6992	17,735,889 – 17,736,037	+	13	173	71.18	-1.77	0.75	0.996787
5095	dm3.chr2R	17,735,889 – 17,736,037		6993	17,735,889 – 17,736,037	-	13	173	71.18	-0.78	0.70	0.922436
5099	dm3.chr2R	17,758,096 – 17,758,190	- - - - - - - -	6997	17,758,096 – 17,758,190	+	11	115	69.18	-1.34	0.78	0.989477
5101	dm3.chr2R	17,764,616 – 17,764,714	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	6999	17,764,616 – 17,764,714	+	8	116	75.67	-1.79	0.62	0.949229
5102	dm3.chr2R	17,766,876 – 17,766,986	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7000	17,766,876 – 17,766,986	+	6	114	80.84	-1.78	0.73	0.929751
5103	dm3.chr2R	17,775,625 – 17,775,727	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7001	17,775,625 – 17,775,724	-	8	102	65.64	-0.89	0.53	0.940981
5103	dm3.chr2R	17,775,625 – 17,775,727		7002	17,775,628 – 17,775,727	-	8	102	64.50	-1.34	0.47	0.979357
5107	dm3.chr2R	17,786,895 – 17,786,989	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7007	17,786,895 – 17,786,989	+	12	119	68.30	-0.95	0.64	0.961361
5108	dm3.chr2R	17,787,820 – 17,787,952	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7008	17,787,820 – 17,787,952	-	11	152	65.73	-1.88	0.37	0.953846
5109	dm3.chr2R	17,788,862 – 17,788,952	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7009	17,788,862 – 17,788,952	-	4	90	93.70	-2.08	0.93	0.952505
5114	dm3.chr2R	17,830,070 – 17,830,201	- - - intron="intron;ID=intron_FBgn0085397:4_FBgn0085397:5;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7015	17,830,070 – 17,830,179	+	6	117	78.81	-2.05	0.64	0.947618
5117	dm3.chr2R	17,852,779 – 17,852,878	- - - intron="intron;ID=intron_FBgn0085398:1_FBgn0085398:2;Name=CG34369-in;Parent=FBtr0112594;parent_type=mRNA" - - - -	7020	17,852,779 – 17,852,878	-	6	103	71.86	-1.84	0.63	0.986975
5118	dm3.chr2R	17,856,726 – 17,856,867	- - - intron="intron;ID=intron_FBgn0085398:6_FBgn0085398:7;Name=CG34369-in;Parent=FBtr0112594;parent_type=mRNA" - - - -	7022	17,856,763 – 17,856,867	+	6	106	82.77	-3.04	0.53	0.980384
5118	dm3.chr2R	17,856,726 – 17,856,867		7023	17,856,763 – 17,856,867	-	6	106	82.77	-2.39	0.69	0.973852
5121	dm3.chr2R	17,873,065 – 17,873,168	- - - - - - - -	7027	17,873,065 – 17,873,168	+	6	116	61.40	-1.06	0.48	0.909900
5127	dm3.chr2R	17,917,536 – 17,917,647	- - - intron="intron;ID=intron_FBgn0085399:8_FBgn0085399:7;Name=CG34370-in;Parent=FBtr0299544;parent_type=mRNA" - - - -	7034	17,917,536 – 17,917,647	-	9	114	67.46	-1.53	0.69	0.994747
5128	dm3.chr2R	17,921,181 – 17,921,323	- - - intron="intron;ID=intron_FBgn0085399:8_FBgn0085399:7;Name=CG34370-in;Parent=FBtr0299544;parent_type=mRNA" - - - -	7035	17,921,181 – 17,921,289	+	9	111	83.82	-2.45	0.61	0.951773
5129	dm3.chr2R	17,921,588 – 17,921,638	- - - intron="intron;ID=intron_FBgn0085399:8_FBgn0085399:7;Name=CG34370-in;Parent=FBtr0299544;parent_type=mRNA" - - - -	7039	17,921,588 – 17,921,638	+	5	50	92.40	-1.34	0.99	0.907743
5130	dm3.chr2R	17,928,930 – 17,929,023	- - - - - - - -	7040	17,928,930 – 17,929,023	+	8	113	70.45	-2.38	0.37	0.922882
5131	dm3.chr2R	17,932,098 – 17,932,206	- - - - - - - -	7041	17,932,098 – 17,932,206	+	11	116	80.42	-2.27	0.62	0.967829
5135	dm3.chr2R	17,967,901 – 17,967,998	- - - intron="intron;ID=intron_CG6562:5_CG6562:2;Name=synj-in;Parent=FBtr0071756;parent_type=mRNA" - - - -	7045	17,967,901 – 17,967,998	+	3	108	77.64	-2.15	0.70	0.917379
5135	dm3.chr2R	17,967,901 – 17,967,998		7046	17,967,901 – 17,967,998	-	3	108	77.64	-2.78	0.80	0.994229
5139	dm3.chr2R	18,030,678 – 18,030,771	- - - - - - - -	7050	18,030,678 – 18,030,771	-	6	101	71.92	-2.29	0.63	0.996384
5140	dm3.chr2R	18,045,009 – 18,045,127	- - - intron="intron;ID=intron_FBgn0000008:5_FBgn0000008:6;Name=a-in;Parent=FBtr0071764,FBtr0100521,FBtr0071763;parent_type=mRNA" - - - -	7051	18,045,009 – 18,045,104	+	8	100	92.53	-2.72	0.85	0.982227
5140	dm3.chr2R	18,045,009 – 18,045,127		7052	18,045,030 – 18,045,127	+	10	108	82.84	-2.24	0.71	0.965840
5142	dm3.chr2R	18,057,842 – 18,057,953	- - CDS="CDS;ID=CDS_FBgn0000008:8_526;Name=a-cds;Parent=FBtr0071764,FBtr0071763;parent_type=mRNA" - - - - -	7054	18,057,842 – 18,057,953	-	13	118	79.56	-2.43	0.45	0.950871
5146	dm3.chr2R	18,086,585 – 18,086,637	- - - - - - - -	7059	18,086,585 – 18,086,637	+	9	52	90.92	-1.99	0.92	0.965579
5152	dm3.chr2R	18,142,803 – 18,142,900	- - - intron="intron;ID=intron_CG5799:1_CG5799:2;Name=dve-in;Parent=FBtr0071775;parent_type=mRNA" - - - -	7065	18,142,803 – 18,142,900	-	12	115	86.81	-2.37	0.85	0.984873
5153	dm3.chr2R	18,148,473 – 18,148,567	- - - intron="intron;ID=intron_CG5799:1_CG5799:2;Name=dve-in;Parent=FBtr0071775;parent_type=mRNA" - - - -	7067	18,148,473 – 18,148,567	-	10	107	84.07	-3.04	0.52	0.968640
5157	dm3.chr2R	18,196,253 – 18,196,344	- - - intron="intron;ID=intron_CG3413:1_CG3413:2;Name=wdp-in;Parent=FBtr0071852;parent_type=mRNA" - - - -	7073	18,196,253 – 18,196,344	-	9	110	77.34	-2.86	0.61	0.997550
5158	dm3.chr2R	18,216,320 – 18,216,446	- - - - - - - -	7075	18,216,350 – 18,216,446	+	9	106	65.80	-0.80	0.62	0.960470
5159	dm3.chr2R	18,235,134 – 18,235,237	- - - intron="intron;ID=intron_FBgn0034720:16_FBgn0034720:14;Name=Liprin-gamma-in;Parent=FBtr0071846;parent_type=mRNA" - - - -	7076	18,235,134 – 18,235,237	+	4	111	75.53	-2.22	0.64	0.969691
5163	dm3.chr2R	18,250,178 – 18,250,289	- - - intron="intron;ID=intron_FBgn0034720:17_FBgn0034720:16;Name=Liprin-gamma-in;Parent=FBtr0071846,FBtr0113107;parent_type=mRNA" - - - -	7080	18,250,178 – 18,250,289	+	5	111	72.61	-2.53	0.57	0.995667
5164	dm3.chr2R	18,251,874 – 18,251,965	- - - intron="intron;ID=intron_FBgn0034720:17_FBgn0034720:16;Name=Liprin-gamma-in;Parent=FBtr0071846,FBtr0113107;parent_type=mRNA" - - - -	7082	18,251,874 – 18,251,965	-	8	104	72.83	-1.60	0.62	0.975747
5165	dm3.chr2R	18,255,768 – 18,255,925	- - - intron="intron;ID=intron_FBgn0034720:17_FBgn0034720:16;Name=Liprin-gamma-in;Parent=FBtr0071846,FBtr0113107;parent_type=mRNA" - - - -	7084	18,255,768 – 18,255,925	-	6	168	86.10	-1.96	0.79	0.908123
5166	dm3.chr2R	18,259,450 – 18,259,571	- - - intron="intron;ID=intron_FBgn0034720:17_FBgn0034720:16;Name=Liprin-gamma-in;Parent=FBtr0071846,FBtr0113107;parent_type=mRNA" - - - -	7085	18,259,450 – 18,259,548	+	7	110	75.34	-2.27	0.49	0.956626
5166	dm3.chr2R	18,259,450 – 18,259,571		7087	18,259,480 – 18,259,571	-	6	92	93.21	-2.22	0.84	0.903556
5169	dm3.chr2R	18,272,107 – 18,272,200	- - - intron="intron;ID=intron_CG13506:1_CG13506:2;Name=CG13506-in;Parent=FBtr0071822;parent_type=mRNA" - - - -	7090	18,272,107 – 18,272,200	-	6	99	65.37	-1.54	0.49	0.968688
5170	dm3.chr2R	18,278,917 – 18,279,081	- - CDS="CDS;ID=CDS_CG13506:4_517;Name=CG13506-cds;Parent=FBtr0071822;parent_type=mRNA" - - - - -	7091	18,278,917 – 18,279,035	+	12	120	84.05	-2.10	0.66	0.929208
				7092	18,278,917 – 18,279,035	-	12	120	84.05	-2.41	0.67	0.975669
				7093	18,278,957 – 18,279,075	+	12	120	87.18	-1.89	0.78	0.903466
				7094	18,278,957 – 18,279,075	-	12	120	87.18	-2.63	0.74	0.983504
5171	dm3.chr2R	18,292,415 – 18,292,537	- - - intron="intron;ID=intron_FBgn0034725:2_FBgn0034725:5;Name=CG6044-in;Parent=FBtr0301188;parent_type=mRNA" - - - -	7097	18,292,415 – 18,292,531	+	5	120	72.21	-1.70	0.59	0.938099
5171	dm3.chr2R	18,292,415 – 18,292,537		7098	18,292,418 – 18,292,537	+	5	120	71.14	-1.80	0.60	0.971228
5174	dm3.chr2R	18,319,560 – 18,319,685	- - - - - - - -	7102	18,319,588 – 18,319,685	-	8	110	61.24	-1.54	0.41	0.965341
5175	dm3.chr2R	18,325,344 – 18,325,462	- - - - - - - -	7103	18,325,344 – 18,325,462	+	12	121	77.91	-1.69	0.64	0.955228
5176	dm3.chr2R	18,331,366 – 18,331,470	- - - - - - - -	7105	18,331,366 – 18,331,465	-	3	99	89.56	-2.43	0.91	0.982040
5179	dm3.chr2R	18,355,011 – 18,355,070	- - - intron="intron;ID=intron_FBgn0034731:2_FBgn0034731:3;Name=CG10384-in;Parent=FBtr0300682,FBtr0300683;parent_type=mRNA" - - - -	7109	18,355,011 – 18,355,070	-	7	62	72.71	-1.43	0.63	0.957246
5180	dm3.chr2R	18,356,412 – 18,356,521	- - - intron="intron;ID=intron_FBgn0034731:2_FBgn0034731:3;Name=CG10384-in;Parent=FBtr0300682,FBtr0300683;parent_type=mRNA" - - - -	7110	18,356,412 – 18,356,521	+	3	109	85.85	-2.33	0.79	0.929088
5185	dm3.chr2R	18,382,004 – 18,382,078	- - - - - - - -	7115	18,382,004 – 18,382,078	-	6	80	73.12	-2.70	0.40	0.979789
5187	dm3.chr2R	18,396,566 – 18,396,656	- - - intron="intron;ID=intron_FBgn0003175:3_FBgn0003175:2;Name=px-in;Parent=FBtr0071838,FBtr0112820;parent_type=mRNA" - - - -	7117	18,396,566 – 18,396,656	-	6	99	75.57	-1.92	0.54	0.904727
5188	dm3.chr2R	18,399,785 – 18,399,899	- - - intron="intron;ID=intron_FBgn0003175:3_FBgn0003175:2;Name=px-in;Parent=FBtr0071838,FBtr0112820;parent_type=mRNA" - - - -	7118	18,399,785 – 18,399,899	-	5	115	57.66	-0.46	0.59	0.942922
5192	dm3.chr2R	18,414,489 – 18,414,599	- - - intron="intron;ID=intron_FBgn0003175:3_FBgn0003175:2;Name=px-in;Parent=FBtr0071838,FBtr0112820;parent_type=mRNA" - - - -	7122	18,414,489 – 18,414,599	-	3	112	50.75	-2.56	0.24	0.947140
5196	dm3.chr2R	18,462,168 – 18,462,295	- - - intron="intron;ID=intron_CG12489:1_CG12489:2;Name=dnr1-in;Parent=FBtr0071837;parent_type=mRNA" - - - -	7128	18,462,168 – 18,462,268	+	4	100	57.35	-1.17	0.51	0.943434
5196	dm3.chr2R	18,462,168 – 18,462,295		7130	18,462,204 – 18,462,295	-	5	93	75.43	-2.29	0.58	0.967724
5201	dm3.chr2R	18,479,126 – 18,479,232	- - - intron="intron;ID=intron_CG12489:1_CG12489:2;Name=dnr1-in;Parent=FBtr0071837;parent_type=mRNA" - - - -	7136	18,479,126 – 18,479,226	+	5	112	67.64	-2.14	0.49	0.978207
				7138	18,479,132 – 18,479,232	+	5	115	67.66	-2.26	0.47	0.970362
				7139	18,479,132 – 18,479,232	-	5	115	67.66	-2.04	0.53	0.974241
5209	dm3.chr2R	18,538,920 – 18,539,021	- - - intron="intron;ID=intron_FBgn0034740:3_FBgn0034740:4;Name=CG3875-in;Parent=FBtr0071861;parent_type=mRNA" - - - -	7147	18,538,920 – 18,539,021	-	3	101	88.12	-2.19	0.82	0.902027
5213	dm3.chr2R	18,573,984 – 18,574,078	- - - - - - - -	7152	18,573,984 – 18,574,078	+	5	104	83.56	-1.88	0.82	0.935690
5213	dm3.chr2R	18,573,984 – 18,574,078	- - - - - - - -	7153	18,573,984 – 18,574,078	-	5	104	83.56	-2.69	0.82	0.992715
5214	dm3.chr2R	18,612,786 – 18,612,899	- - CDS="CDS;ID=CDS_FBgn0028371:8_631;Name=jbug-cds;Parent=FBtr0071919,FBtr0301375,FBtr0301376,FBtr0301377,FBtr0302116,FBtr0302117;parent_type=mRNA" - - - - -	7154	18,612,786 – 18,612,899	+	15	116	78.72	-1.78	0.55	0.945410
5218	dm3.chr2R	18,678,607 – 18,678,719	- - - - - - - -	7159	18,678,607 – 18,678,719	+	12	120	95.23	-2.51	0.84	0.938390
5219	dm3.chr2R	18,682,115 – 18,682,166	- - - - - - - -	7160	18,682,115 – 18,682,166	-	6	55	75.41	-2.71	0.51	0.991318
5222	dm3.chr2R	18,687,917 – 18,688,025	- - - - - - - -	7163	18,687,917 – 18,688,025	+	13	114	66.38	-1.49	0.55	0.997254
5223	dm3.chr2R	18,690,708 – 18,690,897	- - - - - - - -	7166	18,690,738 – 18,690,836	+	5	123	69.69	-2.58	0.43	0.972742
5223	dm3.chr2R	18,690,708 – 18,690,897	- - - - - - - -	7167	18,690,738 – 18,690,836	-	5	123	69.69	-2.29	0.42	0.915241
5224	dm3.chr2R	18,691,338 – 18,691,411	- - - - - - - -	7169	18,691,338 – 18,691,411	-	11	82	73.86	-1.57	0.67	0.985667
5229	dm3.chr2R	18,727,699 – 18,727,795	- - - - - - - -	7175	18,727,699 – 18,727,795	-	8	107	68.17	-1.76	0.48	0.978592
5231	dm3.chr2R	18,755,064 – 18,755,202	- - - - - - - -	7178	18,755,064 – 18,755,202	-	10	150	73.31	-1.57	0.52	0.939093
5232	dm3.chr2R	18,758,659 – 18,758,764	- - - - - - - -	7180	18,758,659 – 18,758,764	-	12	111	74.99	-2.00	0.54	0.970370
5237	dm3.chr2R	18,794,627 – 18,794,737	- - - intron="intron;ID=intron_FBgn0034797:3_FBgn0034797:4;Name=nahoda-in;Parent=FBtr0071942,FBtr0071943,FBtr0304795;parent_type=mRNA" - - - -	7186	18,794,627 – 18,794,737	-	7	112	73.35	-1.53	0.57	0.929917
5242	dm3.chr2R	18,855,654 – 18,855,745	- - - - - - - -	7191	18,855,654 – 18,855,745	-	3	103	76.07	-2.08	0.67	0.908783
5247	dm3.chr2R	18,898,174 – 18,898,268	- - - - - - - -	7196	18,898,174 – 18,898,268	-	10	109	73.23	-1.84	0.53	0.933783
5255	dm3.chr2R	18,922,591 – 18,922,704	- - - intron="intron;ID=intron_FBgn0261705:3_FBgn0261705:2;Name=CG42741-in;Parent=FBtr0303203;parent_type=mRNA" - - - -	7204	18,922,591 – 18,922,704	+	12	117	90.11	-2.83	0.65	0.935371
5256	dm3.chr2R	18,942,193 – 18,942,303	- - - - - - - -	7205	18,942,193 – 18,942,303	-	5	112	84.67	-2.68	0.62	0.928256
5257	dm3.chr2R	18,959,538 – 18,959,625	FBnoncoding="tRNA;ID=FBtr0071983;Name=tRNA:CR30201-RA;Parent=FBgn0050201;Alias=CR30201-RA;Dbxref=FlyBase_Annotation_IDs:CR30201-RA;score_text=Weakly" tRNAscann="Ser_chr2R_trna53" - - "Rfam_10.0=RF00005;tRNA;AAJJ01001810.1/15181-15262\|6.0e-33" "Noncode_2.0=n197986_u194129_AK029664_mRNAlike\|1.1e-09" "unique_Noncode_2.0=u194129_mRNAlike\|9.7e-10" -	7206	18,959,538 – 18,959,625	+	13	87	89.68	-3.30	0.97	0.998484
5257	dm3.chr2R	18,959,538 – 18,959,625		7207	18,959,538 – 18,959,625	-	13	87	89.68	-2.33	0.98	0.993871
5258	dm3.chr2R	18,960,102 – 18,960,201	FBnoncoding="tRNA;ID=FBtr0071962;Name=tRNA:CR30202-RA;Parent=FBgn0050202;Alias=CR30202-RA;Dbxref=FlyBase_Annotation_IDs:CR30202-RA;score_text=Weakly" tRNAscann="Ser_chr2R_trna48" - - "Rfam_10.0=RF00005;tRNA;AAJJ01001810.1/15181-15262\|4.5e-34" "Noncode_2.0=n197986_u194129_AK029664_mRNAlike\|2.2e-14" "unique_Noncode_2.0=u194129_mRNAlike\|1.9e-14" -	7208	18,960,102 – 18,960,201	+	12	102	82.64	-1.00	1.00	0.930376
5258	dm3.chr2R	18,960,102 – 18,960,201		7209	18,960,102 – 18,960,201	-	12	102	82.64	-1.81	0.80	0.972748
5261	dm3.chr2R	18,977,161 – 18,977,267	- - - - - - - -	7212	18,977,161 – 18,977,267	+	6	113	65.21	-1.41	0.46	0.911521
5264	dm3.chr2R	19,006,374 – 19,006,467	- - - - - - - -	7215	19,006,374 – 19,006,467	-	6	114	80.74	-2.35	0.65	0.951117
5266	dm3.chr2R	19,037,573 – 19,037,723	- - - - - - - -	7217	19,037,573 – 19,037,723	-	9	174	69.32	-1.75	0.49	0.970788
5267	dm3.chr2R	19,042,718 – 19,042,783	- - - - - - - -	7218	19,042,718 – 19,042,783	-	8	65	88.35	-2.07	0.87	0.963396
5269	dm3.chr2R	19,065,047 – 19,065,122	- - - intron="intron;ID=intron_FBgn0085400:13_FBgn0085400:12;Name=CG34371-in;Parent=FBtr0112596;parent_type=mRNA" - - - -	7221	19,065,047 – 19,065,122	+	4	75	91.33	-1.80	0.93	0.929934
5272	dm3.chr2R	19,112,274 – 19,112,368	- - - - - - - -	7224	19,112,274 – 19,112,368	+	7	98	58.85	-2.81	0.15	0.938659
5274	dm3.chr2R	19,121,568 – 19,121,684	- - - - - - - -	7226	19,121,568 – 19,121,675	-	5	109	91.43	-2.20	0.89	0.955743
5274	dm3.chr2R	19,121,568 – 19,121,684	- - - - - - - -	7227	19,121,577 – 19,121,684	-	6	120	72.48	-2.25	0.57	0.985884
5276	dm3.chr2R	19,125,822 – 19,125,972	- - - - - - - -	7229	19,125,822 – 19,125,932	+	6	111	71.04	-2.04	0.46	0.963015
				7230	19,125,822 – 19,125,932	-	6	111	71.04	-2.47	0.41	0.980004
				7231	19,125,858 – 19,125,972	-	6	115	66.51	-1.60	0.42	0.910656
5278	dm3.chr2R	19,128,438 – 19,128,549	- - - - - - - -	7234	19,128,438 – 19,128,549	+	3	111	77.07	-2.18	0.90	0.987583
5280	dm3.chr2R	19,144,665 – 19,144,715	- - - - - - - -	7237	19,144,665 – 19,144,715	-	3	50	94.67	-1.85	1.05	0.988378
5281	dm3.chr2R	19,145,155 – 19,145,247	- - - - - - - -	7238	19,145,155 – 19,145,247	+	7	119	64.48	-3.82	0.19	0.986440
5284	dm3.chr2R	19,177,650 – 19,177,780	- - - - - - - -	7242	19,177,650 – 19,177,780	-	5	134	86.98	-2.33	0.89	0.984827
5285	dm3.chr2R	19,183,117 – 19,183,227	- - - - - - - -	7243	19,183,117 – 19,183,227	-	12	118	81.16	-2.74	0.47	0.948465
5293	dm3.chr2R	19,257,376 – 19,257,476	- - CDS="CDS;ID=CDS_CG13550:2_525;Name=CG13550-cds;Parent=FBtr0072010;parent_type=mRNA" - - - - -	7253	19,257,376 – 19,257,476	+	5	100	75.23	-2.78	0.49	0.960048
5299	dm3.chr2R	19,317,012 – 19,317,110	- - - - - - - -	7262	19,317,012 – 19,317,110	-	6	109	88.52	-2.11	0.84	0.939013
5301	dm3.chr2R	19,319,696 – 19,319,764	- - - - - - - -	7264	19,319,696 – 19,319,764	+	7	68	71.12	-1.83	0.50	0.976171
5302	dm3.chr2R	19,319,978 – 19,320,100	- - - - - - - -	7265	19,319,978 – 19,320,100	-	5	126	70.29	-1.57	0.61	0.930578
5303	dm3.chr2R	19,338,183 – 19,338,239	- - - - - - - -	7266	19,338,183 – 19,338,239	+	8	62	71.16	-2.24	0.54	0.995138
5307	dm3.chr2R	19,369,341 – 19,369,453	- - - intron="intron;ID=intron_FBgn0085401:5_FBgn0085401:6;Name=CG34372-in;Parent=FBtr0273218;parent_type=mRNA" - - - -	7273	19,369,349 – 19,369,453	-	3	104	90.35	-2.27	0.89	0.959346
5316	dm3.chr2R	19,424,359 – 19,424,415	- - - intron="intron;ID=intron_FBgn0000241:8_FBgn0000241:6;Name=bw-in;Parent=FBtr0072117;parent_type=mRNA" - - - -	7287	19,424,359 – 19,424,415	+	7	68	61.94	-0.90	0.55	0.942934
5316	dm3.chr2R	19,424,359 – 19,424,415		7288	19,424,359 – 19,424,415	-	7	68	61.94	-1.23	0.72	0.995370
5319	dm3.chr2R	19,443,758 – 19,443,838	- - - - - - - -	7291	19,443,758 – 19,443,838	+	5	80	77.71	-2.15	0.76	0.986262
5319	dm3.chr2R	19,443,758 – 19,443,838	- - - - - - - -	7292	19,443,758 – 19,443,838	-	5	80	77.71	-2.49	0.67	0.989999
5321	dm3.chr2R	19,464,107 – 19,464,201	- - - intron="intron;ID=intron_FBgn0015903:2_FBgn0015903:6;Name=apt-in;Parent=FBtr0072069;parent_type=mRNA" - - - -	7294	19,464,107 – 19,464,201	+	8	116	62.82	-1.28	0.51	0.980693
5322	dm3.chr2R	19,466,044 – 19,466,119	- - - intron="intron;ID=intron_FBgn0015903:2_FBgn0015903:6;Name=apt-in;Parent=FBtr0072069;parent_type=mRNA" - - - -	7295	19,466,044 – 19,466,119	-	5	76	64.52	-2.08	0.46	0.987349
5323	dm3.chr2R	19,469,287 – 19,469,377	- - - intron="intron;ID=intron_FBgn0015903:4_FBgn0015903:6;Name=apt-in;Parent=FBtr0072067;parent_type=mRNA" - - - -	7296	19,469,287 – 19,469,377	+	5	106	75.18	-3.03	0.43	0.959354
5324	dm3.chr2R	19,475,942 – 19,476,009	- - - intron="intron;ID=intron_FBgn0015903:5_FBgn0015903:6;Name=apt-in;Parent=FBtr0072068;parent_type=mRNA" - - - -	7298	19,475,942 – 19,476,009	-	6	75	68.48	-0.76	0.66	0.909227
5333	dm3.chr2R	19,551,000 – 19,551,125	- - - intron="intron;ID=intron_FBgn0034886:9_FBgn0034886:12;Name=Pde8-in;Parent=FBtr0302130;parent_type=mRNA" - - - -	7311	19,551,000 – 19,551,097	-	5	117	63.12	-2.46	0.30	0.923535
5335	dm3.chr2R	19,599,582 – 19,599,694	- - - - - - - -	7315	19,599,582 – 19,599,694	+	6	118	83.89	-2.17	0.73	0.934492
5335	dm3.chr2R	19,599,582 – 19,599,694	- - - - - - - -	7316	19,599,582 – 19,599,694	-	6	118	83.89	-2.76	0.73	0.988369
5337	dm3.chr2R	19,605,676 – 19,605,771	- - - intron="intron;ID=intron_FBgn0034897:4_FBgn0034897:5;Name=Sesn-in;Parent=FBtr0113114;parent_type=mRNA" - - - -	7319	19,605,676 – 19,605,771	-	7	105	70.94	-2.37	0.51	0.986741
5338	dm3.chr2R	19,606,199 – 19,606,262	- - - intron="intron;ID=intron_FBgn0034897:4_FBgn0034897:5;Name=Sesn-in;Parent=FBtr0113114;parent_type=mRNA" - - - -	7320	19,606,199 – 19,606,262	+	6	66	70.20	-2.60	0.30	0.938848
5342	dm3.chr2R	19,614,081 – 19,614,196	- - - intron="intron;ID=intron_FBgn0034897:5_FBgn0034897:6;Name=Sesn-in;Parent=FBtr0072087,FBtr0113113,FBtr0113114;parent_type=mRNA" - - - -	7324	19,614,081 – 19,614,196	-	3	115	58.65	-2.04	0.42	0.951075
5343	dm3.chr2R	19,615,796 – 19,615,956	- - - intron="intron;ID=intron_FBgn0034897:5_FBgn0034897:6;Name=Sesn-in;Parent=FBtr0072087,FBtr0113113,FBtr0113114;parent_type=mRNA" - - - -	7327	19,615,836 – 19,615,956	-	3	120	74.36	-2.22	0.71	0.968775
5344	dm3.chr2R	19,621,532 – 19,621,677	- - - - - - - -	7329	19,621,570 – 19,621,670	+	9	117	68.57	-2.47	0.71	0.999449
5344	dm3.chr2R	19,621,532 – 19,621,677	- - - - - - - -	7330	19,621,570 – 19,621,670	-	9	117	68.57	-2.25	0.49	0.995291
5345	dm3.chr2R	19,630,883 – 19,630,980	- - - intron="intron;ID=intron_FBgn0000562:7_FBgn0000562:6;Name=egl-in;Parent=FBtr0114586;parent_type=mRNA" - - - -	7332	19,630,883 – 19,630,980	+	7	104	67.14	-2.20	0.64	0.998222
5345	dm3.chr2R	19,630,883 – 19,630,980		7333	19,630,883 – 19,630,980	-	7	104	67.14	-1.35	0.62	0.970358
5347	dm3.chr2R	19,634,778 – 19,634,847	- - - - - - - -	7335	19,634,778 – 19,634,847	+	5	86	65.70	-1.82	0.56	0.980611
5348	dm3.chr2R	19,653,379 – 19,653,473	- - - intron="intron;ID=intron_FBgn0034903:11_FBgn0034903:9;Name=CG9850-in;Parent=FBtr0100330;parent_type=mRNA" - - - -	7336	19,653,379 – 19,653,473	-	8	113	80.16	-2.72	0.51	0.950238
5351	dm3.chr2R	19,689,482 – 19,689,598	- - CDS="CDS;ID=CDS_FBgn0050177:1_648;Name=CG30177-cds;Parent=FBtr0072122;parent_type=mRNA" - - - - -	7340	19,689,482 – 19,689,598	-	6	117	69.57	-2.11	0.42	0.960870
5354	dm3.chr2R	19,713,771 – 19,713,877	- - - - - - - -	7343	19,713,771 – 19,713,877	+	6	118	77.29	-2.82	0.58	0.993570
5359	dm3.chr2R	19,747,530 – 19,747,662	- - CDS="CDS;ID=CDS_FBgn0025790:4_619;Name=TBPH-cds;Parent=FBtr0301644;parent_type=mRNA" - - - - -	7349	19,747,561 – 19,747,662	-	14	110	71.34	-1.31	0.52	0.942909
5364	dm3.chr2R	19,802,025 – 19,802,124	- - - intron="intron;ID=intron_CG5594:13_CG5594:14;Name=kcc-in;Parent=FBtr0072136,FBtr0072138,FBtr0072137,FBtr0072139;parent_type=mRNA" - - - -	7356	19,802,025 – 19,802,124	+	5	111	53.91	-0.81	0.50	0.965031
5364	dm3.chr2R	19,802,025 – 19,802,124		7357	19,802,025 – 19,802,124	-	5	111	53.91	-1.01	0.53	0.989587
5366	dm3.chr2R	19,810,138 – 19,810,232	- - CDS="CDS;ID=CDS_CG5594:16_652;Name=kcc-cds;Parent=FBtr0072136,FBtr0072138,FBtr0072137,FBtr0072139;parent_type=mRNA" - - - - -	7359	19,810,138 – 19,810,232	+	13	111	71.50	-1.17	0.72	0.981931
5370	dm3.chr2R	19,823,177 – 19,823,336	- - - - - - - -	7363	19,823,177 – 19,823,297	+	12	120	97.71	-2.87	0.88	0.978074
				7364	19,823,177 – 19,823,297	-	12	120	97.71	-2.19	0.93	0.946608
				7365	19,823,217 – 19,823,336	+	12	120	96.68	-2.59	0.96	0.989685
				7366	19,823,217 – 19,823,336	-	12	120	96.68	-2.40	0.90	0.957906
5371	dm3.chr2R	19,828,290 – 19,828,359	- - - intron="intron;ID=intron_FBgn0023477:1_FBgn0023477:2;Name=Tal-in;Parent=FBtr0072141;parent_type=mRNA" - - - -	7367	19,828,290 – 19,828,359	-	11	78	77.57	-2.22	0.55	0.977005
5373	dm3.chr2R	19,845,347 – 19,845,452	- - - - - - - -	7370	19,845,347 – 19,845,452	+	7	120	81.92	-3.23	0.52	0.987545
5374	dm3.chr2R	19,876,557 – 19,876,612	- - CDS="CDS;ID=CDS_CG3105:2_658;Name=Pask-cds;Parent=FBtr0072160;parent_type=mRNA" - - - - -	7371	19,876,557 – 19,876,612	+	9	55	78.59	-1.82	0.74	0.977868
5375	dm3.chr2R	19,882,607 – 19,882,709	- - - - - - - -	7372	19,882,607 – 19,882,709	-	5	102	81.29	-2.86	0.86	0.996976
5377	dm3.chr2R	19,897,302 – 19,897,394	- - CDS="CDS;ID=CDS_FBgn0053519:32_578;Name=Unc-89-cds;Parent=FBtr0113464;parent_type=mRNA" - - - - -	7375	19,897,302 – 19,897,394	-	4	101	63.67	-2.00	0.44	0.938553
5379	dm3.chr2R	19,921,365 – 19,921,454	- - - - - - - -	7377	19,921,365 – 19,921,454	-	9	92	88.03	-1.90	0.85	0.937055
5383	dm3.chr2R	19,943,603 – 19,943,719	- - CDS="CDS;ID=CDS_FBgn0034966:4_578;Name=CG13563-cds;Parent=FBtr0113117;parent_type=mRNA" - - - - -	7383	19,943,603 – 19,943,719	-	7	140	66.30	-1.43	0.52	0.945569
5385	dm3.chr2R	19,951,368 – 19,951,462	- - - intron="intron;ID=intron_FBgn0025806:1_FBgn0025806:3;Name=Rap2l-in;Parent=FBtr0072177;parent_type=mRNA" - - - -	7385	19,951,368 – 19,951,462	+	6	114	64.97	-1.30	0.55	0.903292
5387	dm3.chr2R	19,961,527 – 19,961,673	- - - - - - - -	7387	19,961,527 – 19,961,631	+	8	120	78.25	-2.10	0.69	0.973646
				7388	19,961,527 – 19,961,631	-	8	120	78.25	-2.08	0.63	0.948150
				7389	19,961,559 – 19,961,665	+	8	120	83.05	-2.49	0.59	0.912972
				7390	19,961,559 – 19,961,665	-	8	120	83.05	-2.92	0.58	0.975074
5388	dm3.chr2R	19,995,720 – 19,995,770	- - CDS="CDS;ID=CDS_CG4049:8_543;Name=CG4049-cds;Parent=FBtr0072285;parent_type=mRNA" - - - - -	7393	19,995,720 – 19,995,770	+	6	50	76.40	-1.34	0.85	0.954696
5398	dm3.chr2R	20,063,720 – 20,063,820	- - - intron="intron;ID=intron_FBgn0259937:4_FBgn0259937:5;Name=Nop60B-in;Parent=FBtr0072258,FBtr0100213,FBtr0300227,FBtr0300228,FBtr0300229,FBtr0300861;parent_type=mRNA" "Rfam_10.0=RF00291;snoR639;AAST01027501.1/1343-1482\|1.7e-30" "Noncode_2.0=n798_u330_AF097634_snoRNA_Drosophila\|7.0e-33" "unique_Noncode_2.0=u330_snoRNA_Drosophila\|6.1e-33" -	7403	20,063,720 – 20,063,820	+	12	109	68.00	-0.78	0.67	0.975667
5398	dm3.chr2R	20,063,720 – 20,063,820		7404	20,063,720 – 20,063,820	-	12	109	68.00	-0.55	0.69	0.953709
5399	dm3.chr2R	20,071,898 – 20,071,997	- - - intron="intron;ID=intron_FBgn0259937:7_FBgn0259937:9;Name=Nop60B-in;Parent=FBtr0300861;parent_type=mRNA" - - - -	7405	20,071,898 – 20,071,997	+	6	103	53.55	-1.30	0.52	0.997368
5399	dm3.chr2R	20,071,898 – 20,071,997		7406	20,071,898 – 20,071,997	-	6	103	53.55	-1.30	0.61	0.998946
5401	dm3.chr2R	20,094,776 – 20,094,886	- - - intron="intron;ID=intron_FBgn0034990:8_FBgn0034990:5;Name=CG11406-in;Parent=FBtr0100169;parent_type=mRNA" - - - -	7408	20,094,776 – 20,094,886	+	4	120	55.73	-1.44	0.45	0.936206
5402	dm3.chr2R	20,096,922 – 20,097,003	- - - - - - - -	7409	20,096,922 – 20,097,003	+	6	86	63.51	-1.21	0.49	0.946136
5407	dm3.chr2R	20,116,851 – 20,117,056	- - - - - - - -	7414	20,116,851 – 20,116,960	+	5	112	67.80	-1.56	0.54	0.952954
5408	dm3.chr2R	20,127,984 – 20,128,129	- - - - - - - -	7417	20,128,022 – 20,128,129	-	4	116	65.57	-1.91	0.57	0.985003
5410	dm3.chr2R	20,133,987 – 20,134,046	- - - intron="intron;ID=intron_FBgn0050418:2_FBgn0050418:3;Name=nord-in;Parent=FBtr0072263;parent_type=mRNA" - - - -	7420	20,133,987 – 20,134,046	-	6	59	99.44	-2.36	1.00	0.986455
5415	dm3.chr2R	20,163,951 – 20,164,033	- - - intron="intron;ID=intron_CG3385:1_CG3385:2;Name=nvy-in;Parent=FBtr0072267;parent_type=mRNA" - - - -	7426	20,163,951 – 20,164,033	-	10	93	82.63	-1.99	0.64	0.911385
5423	dm3.chr2R	20,225,187 – 20,225,295	- - - - - - - -	7437	20,225,187 – 20,225,295	+	7	111	56.64	-0.98	0.44	0.965676
5423	dm3.chr2R	20,225,187 – 20,225,295	- - - - - - - -	7438	20,225,187 – 20,225,295	-	7	111	56.64	-1.56	0.52	0.998849
5424	dm3.chr2R	20,225,982 – 20,226,189	- - - - - - - -	7440	20,225,982 – 20,226,091	-	4	111	90.15	-2.13	0.90	0.960842
5424	dm3.chr2R	20,225,982 – 20,226,189	- - - - - - - -	7442	20,226,053 – 20,226,163	-	10	120	80.08	-2.37	0.66	0.973128
5427	dm3.chr2R	20,236,350 – 20,236,454	- - - intron="intron;ID=intron_FBgn0004101:2_FBgn0004101:4;Name=bs-in;Parent=FBtr0072271;parent_type=mRNA" - - - -	7446	20,236,350 – 20,236,454	+	5	120	73.26	-4.13	0.45	0.999456
5430	dm3.chr2R	20,255,047 – 20,255,097	- - - intron="intron;ID=intron_FBgn0004101:2_FBgn0004101:4;Name=bs-in;Parent=FBtr0072271;parent_type=mRNA" - - - -	7450	20,255,047 – 20,255,097	-	5	50	99.20	-1.63	1.00	0.926260
5434	dm3.chr2R	20,273,725 – 20,273,775	- - - intron="intron;ID=intron_CG4356:1_CG4356:2;Name=mAcR-60C-in;Parent=FBtr0072367,FBtr0072368;parent_type=mRNA" - - - -	7456	20,273,725 – 20,273,775	+	10	51	95.35	-2.32	0.95	0.981846
5434	dm3.chr2R	20,273,725 – 20,273,775		7457	20,273,725 – 20,273,775	-	10	51	95.35	-2.15	0.91	0.946084
5436	dm3.chr2R	20,280,899 – 20,280,994	- - - - - - - -	7460	20,280,899 – 20,280,994	-	6	100	74.97	-3.08	0.64	0.999070
5437	dm3.chr2R	20,286,235 – 20,286,329	- - CDS="CDS;ID=CDS_FBgn0035001:9_580;Name=slik-cds;Parent=FBtr0072363,FBtr0072364,FBtr0100470,FBtr0290019;parent_type=mRNA" - - - - -	7461	20,286,235 – 20,286,329	+	7	94	72.57	-1.46	0.53	0.912310
5438	dm3.chr2R	20,286,632 – 20,286,733	- - CDS="CDS;ID=CDS_FBgn0035001:10_580;Name=slik-cds;Parent=FBtr0072363,FBtr0072364,FBtr0100470,FBtr0290019;parent_type=mRNA" - - - - -	7462	20,286,632 – 20,286,733	+	14	110	76.81	-1.15	0.71	0.950779
5442	dm3.chr2R	20,314,090 – 20,314,140	- - - intron="intron;ID=intron_FBgn0259210:20_FBgn0259210:19;Name=prom-in;Parent=FBtr0299698,FBtr0299699,FBtr0299700;parent_type=mRNA" - - - -	7469	20,314,090 – 20,314,140	+	4	50	97.00	-2.09	0.98	0.972220
5442	dm3.chr2R	20,314,090 – 20,314,140		7470	20,314,090 – 20,314,140	-	4	50	97.00	-1.88	1.00	0.968048
5447	dm3.chr2R	20,368,263 – 20,368,313	- - - - - - - -	7477	20,368,263 – 20,368,313	-	4	50	93.67	-2.65	0.85	0.964323
5449	dm3.chr2R	20,377,464 – 20,377,554	- - - - - - - -	7479	20,377,464 – 20,377,554	-	3	90	80.71	-2.53	0.65	0.909240
5451	dm3.chr2R	20,386,786 – 20,386,882	- - - - - - - -	7482	20,386,786 – 20,386,882	-	7	112	60.64	-1.09	0.61	0.983624
5455	dm3.chr2R	20,413,577 – 20,413,683	- - - - - - - -	7488	20,413,577 – 20,413,683	-	7	118	63.32	-2.36	0.45	0.998699
5462	dm3.chr2R	20,542,355 – 20,542,411	- - - - - - - -	7497	20,542,355 – 20,542,411	+	7	58	66.50	-0.88	0.71	0.983017
5462	dm3.chr2R	20,542,355 – 20,542,411	- - - - - - - -	7498	20,542,355 – 20,542,411	-	7	58	66.50	-0.88	0.80	0.985784
5464	dm3.chr2R	20,552,442 – 20,552,537	- - CDS="CDS;ID=CDS_FBgn0035046:7_586;Name=CG3683-cds;Parent=FBtr0301036;parent_type=mRNA" - - - - -	7500	20,552,442 – 20,552,537	+	15	110	76.90	-1.57	0.59	0.922718
5465	dm3.chr2R	20,556,987 – 20,557,068	- - - intron="intron;ID=intron_CG3691:1_CG3691:2;Name=Pof-in;Parent=FBtr0072327;parent_type=mRNA" - - - -	7501	20,556,987 – 20,557,068	-	6	96	70.74	-1.68	0.71	0.987997
5468	dm3.chr2R	20,567,407 – 20,567,500	- - - intron="intron;ID=intron_FBgn0035049:9_FBgn0035049:8;Name=Mmp1-in;Parent=FBtr0273263,FBtr0273264,FBtr0304005,FBtr0304006,FBtr0304007,FBtr0304008,FBtr0304009,FBtr0304010,FBtr0304011;parent_type=mRNA" - - - -	7504	20,567,407 – 20,567,500	+	7	113	69.70	-2.59	0.45	0.994181
5469	dm3.chr2R	20,568,641 – 20,568,752	- - - intron="intron;ID=intron_FBgn0035049:9_FBgn0035049:8;Name=Mmp1-in;Parent=FBtr0273263,FBtr0273264,FBtr0304005,FBtr0304006,FBtr0304007,FBtr0304008,FBtr0304009,FBtr0304010,FBtr0304011;parent_type=mRNA" - - - -	7505	20,568,641 – 20,568,752	-	5	118	62.15	-1.94	0.38	0.957413
5471	dm3.chr2R	20,587,304 – 20,587,405	- - CDS="CDS;ID=CDS_CG33988:6_548;Name=CG33988-cds;Parent=FBtr0100033;parent_type=mRNA" - - - - -	7508	20,587,304 – 20,587,405	-	12	120	67.91	-2.23	0.43	0.993353
5473	dm3.chr2R	20,594,990 – 20,595,082	- - - intron="intron;ID=intron_CG33988:3_CG33988:4;Name=CG33988-in;Parent=FBtr0100033;parent_type=mRNA" - - - -	7510	20,594,990 – 20,595,082	-	10	114	67.75	-1.53	0.52	0.981643
5475	dm3.chr2R	20,605,291 – 20,605,379	- - - intron="intron;ID=intron_CG33988:2_CG33988:3;Name=CG33988-in;Parent=FBtr0100033;parent_type=mRNA" - - - -	7512	20,605,291 – 20,605,379	+	5	112	73.36	-1.80	0.75	0.970734
5479	dm3.chr2R	20,615,258 – 20,615,364	- - - intron="intron;ID=intron_CG33988:1_CG33988:2;Name=CG33988-in;Parent=FBtr0100033;parent_type=mRNA" - - - -	7516	20,615,258 – 20,615,364	-	3	106	83.28	-1.98	0.87	0.950980
5482	dm3.chr2R	20,630,142 – 20,630,216	- - - - - - - -	7519	20,630,142 – 20,630,216	-	12	74	92.93	-2.08	0.85	0.902847
5487	dm3.chr2R	20,742,421 – 20,742,514	- - - - - - - -	7526	20,742,421 – 20,742,514	+	10	116	78.58	-2.14	0.73	0.986593
5489	dm3.chr2R	20,784,460 – 20,784,551	- - - intron="intron;ID=intron_FBgn0085434:5_FBgn0085434:6;Name=NaCP60E-in;Parent=FBtr0303040,FBtr0112670;parent_type=mRNA" - - - -	7530	20,784,460 – 20,784,551	-	7	106	61.39	-1.57	0.39	0.911012
5491	dm3.chr2R	20,802,193 – 20,802,505	- - CDS="CDS;ID=CDS_FBgn0085434:26_649;Name=NaCP60E-cds;Parent=FBtr0303040,FBtr0112670;parent_type=mRNA" - - - - -	7533	20,802,193 – 20,802,313	-	15	120	88.24	-2.62	0.82	0.991627
				7534	20,802,233 – 20,802,353	+	15	120	88.89	-2.66	0.69	0.967149
				7535	20,802,233 – 20,802,353	-	15	120	88.89	-2.74	0.70	0.976870
				7536	20,802,273 – 20,802,389	+	15	120	88.00	-3.02	0.74	0.993776
				7537	20,802,273 – 20,802,389	-	15	120	88.00	-3.45	0.74	0.997646
				7538	20,802,389 – 20,802,505	+	15	120	90.14	-2.40	0.81	0.971201
				7539	20,802,389 – 20,802,505	-	15	120	90.14	-2.53	0.72	0.945710
5494	dm3.chr2R	20,830,820 – 20,830,886	- - - - - - - -	7542	20,830,820 – 20,830,886	+	3	66	74.86	-1.19	0.95	0.911253
5497	dm3.chr2R	20,847,448 – 20,847,577	- - - - - - - -	7545	20,847,448 – 20,847,577	+	8	140	63.33	-2.87	0.40	0.999458
5497	dm3.chr2R	20,847,448 – 20,847,577	- - - - - - - -	7546	20,847,448 – 20,847,577	-	8	140	63.33	-2.38	0.26	0.947769
5499	dm3.chr2R	20,868,361 – 20,868,470	- - - intron="intron;ID=intron_FBgn0010435:8_FBgn0010435:7;Name=emp-in;Parent=FBtr0072402;parent_type=mRNA" - - - -	7548	20,868,361 – 20,868,470	+	3	109	95.11	-2.39	0.92	0.967341
5500	dm3.chr2R	20,879,836 – 20,879,956	- - CDS="CDS;ID=CDS_FBgn0005634:4_644;Name=zip-cds;Parent=FBtr0100466,FBtr0302574;parent_type=mRNA" - - - - -	7549	20,879,836 – 20,879,956	+	14	120	78.42	-3.55	0.22	0.931324
5504	dm3.chr2R	20,935,293 – 20,935,391	- - - intron="intron;ID=intron_CG2692:3_CG2692:4;Name=gsb-n-in;Parent=FBtr0072461;parent_type=mRNA" - - - -	7554	20,935,293 – 20,935,391	+	11	111	77.20	-2.83	0.50	0.992591
5507	dm3.chr2R	20,954,107 – 20,954,206	- - - - - - - -	7557	20,954,107 – 20,954,206	+	12	114	81.80	-2.15	0.68	0.968928
5508	dm3.chr2R	20,964,287 – 20,964,362	FBnoncoding="tRNA;ID=FBtr0072446;Name=tRNA:CR30199-RA;Parent=FBgn0050199;Alias=CR30199-RA;Dbxref=FlyBase_Annotation_IDs:CR30199-RA;score_text=Weakly" tRNAscann="Ala_chr2R_trna51" - intron="intron;ID=intron_FBgn0004919:9_FBgn0004919:8;Name=gol-in;Parent=FBtr0072459,FBtr0300178,FBtr0300179,FBtr0306330;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPP01019771.1/35742-35813\|2.7e-22" - - -	7558	20,964,287 – 20,964,362	+	12	84	89.53	-1.76	1.01	0.984187
5510	dm3.chr2R	20,974,500 – 20,974,601	- - CDS="CDS;ID=CDS_FBgn0003715:1_509;Name=CG16778-cds;Parent=FBtr0072458;parent_type=mRNA" - - - - -	7561	20,974,500 – 20,974,601	+	11	108	73.48	-2.58	0.41	0.987668
5512	dm3.chr2R	20,982,183 – 20,982,291	- - CDS="CDS;ID=CDS_FBgn0003715:3_509;Name=CG16778-cds;Parent=FBtr0072458;parent_type=mRNA" - - - - -	7564	20,982,183 – 20,982,291	-	11	111	82.54	-2.76	0.66	0.994351
5513	dm3.chr2R	20,997,453 – 20,997,553	- - - - - - - -	7565	20,997,453 – 20,997,553	+	12	118	75.63	-1.71	0.62	0.938925
5513	dm3.chr2R	20,997,453 – 20,997,553	- - - - - - - -	7566	20,997,453 – 20,997,553	-	12	118	75.63	-1.61	0.61	0.904875
5514	dm3.chr2R	21,002,750 – 21,002,888	- - - - - - - -	7567	21,002,750 – 21,002,848	-	6	106	84.17	-1.71	0.85	0.926874
5515	dm3.chr2R	21,014,097 – 21,014,220	- - - - - - - -	7570	21,014,097 – 21,014,189	-	4	92	72.22	-2.81	0.66	0.997551
5517	dm3.chr2R	21,029,655 – 21,029,720	- - - - - - - -	7573	21,029,655 – 21,029,720	+	4	65	53.87	-1.08	0.62	0.994993
5517	dm3.chr2R	21,029,655 – 21,029,720	- - - - - - - -	7574	21,029,655 – 21,029,720	-	4	65	53.87	-0.95	0.67	0.994548
5518	dm3.chr2R	21,067,238 – 21,067,342	- - - - - - - -	7575	21,067,238 – 21,067,342	-	6	104	82.18	-2.18	0.71	0.962534
5519	dm3.chr3LHet	7,803 – 7,865	- - - - - - - -	7576	7,803 – 7,865	+	3	62	61.83	-1.82	0.57	0.982850
5521	dm3.chr3LHet	25,939 – 26,021	- - - - - - - -	7579	25,939 – 26,021	-	4	84	57.68	-1.36	0.41	0.903611
5522	dm3.chr3LHet	44,782 – 44,857	- - - - - - - -	7580	44,782 – 44,857	+	6	76	68.34	-1.49	0.58	0.984226
5527	dm3.chr3LHet	171,704 – 171,793	- - - - - - - -	7588	171,704 – 171,793	+	4	97	59.15	-2.76	0.22	0.904051
5529	dm3.chr3LHet	207,439 – 207,559	- - - - - - - -	7590	207,439 – 207,559	+	10	120	99.83	-2.39	1.00	0.986598
5529	dm3.chr3LHet	207,439 – 207,559	- - - - - - - -	7591	207,439 – 207,559	-	10	120	99.83	-1.81	0.99	0.937830
5530	dm3.chr3LHet	209,392 – 209,446	- - CDS="CDS;ID=CDS_CG17594:209156-209624_1058;Name=scro-cds;Parent=FBtr0113750,FBtr0113751,FBtr0113752;parent_type=mRNA" - - - - -	7592	209,392 – 209,446	+	10	54	78.56	-1.52	0.76	0.970685
5532	dm3.chr3LHet	258,597 – 258,671	- - - - - - - -	7594	258,597 – 258,671	-	6	74	82.70	-2.80	0.76	0.994937
5534	dm3.chr3LHet	288,573 – 288,638	- - - - - - - -	7596	288,573 – 288,638	-	5	65	55.16	-1.55	0.34	0.951871
5536	dm3.chr3LHet	394,954 – 395,096	- - - - - - - -	7600	394,988 – 395,096	-	3	108	91.67	-2.74	0.85	0.976010
5541	dm3.chr3LHet	438,804 – 438,956	- - - - - - - -	7605	438,804 – 438,919	+	5	120	89.39	-3.50	0.74	0.994077
				7606	438,804 – 438,919	-	5	120	89.39	-3.02	0.75	0.982033
				7607	438,839 – 438,956	+	5	120	87.15	-2.67	0.78	0.979647
5542	dm3.chr3LHet	439,842 – 439,945	- - - - - - - -	7609	439,842 – 439,945	+	5	113	69.91	-2.71	0.55	0.997904
5542	dm3.chr3LHet	439,842 – 439,945	- - - - - - - -	7610	439,842 – 439,945	-	5	113	69.91	-1.70	0.60	0.970617
5543	dm3.chr3LHet	482,938 – 483,043	- - - - - - - -	7611	482,938 – 483,043	+	3	105	56.73	-3.50	0.15	0.921048
5544	dm3.chr3LHet	486,108 – 486,220	- - - - - - - -	7613	486,108 – 486,220	-	4	114	62.28	-1.40	0.47	0.917943
5545	dm3.chr3LHet	486,272 – 486,397	- - - - - - - -	7614	486,272 – 486,397	+	4	143	59.29	-1.73	0.39	0.943043
5546	dm3.chr3LHet	486,600 – 486,742	- - - - - - - -	7617	486,600 – 486,714	-	4	120	59.11	-2.12	0.30	0.923076
5547	dm3.chr3LHet	487,516 – 487,608	- - - - - - - -	7620	487,516 – 487,608	-	3	107	55.13	-3.32	0.47	0.999766
5551	dm3.chr3LHet	517,378 – 517,479	- - - - - - - -	7625	517,378 – 517,479	+	3	105	51.60	-2.03	0.31	0.905945
5551	dm3.chr3LHet	517,378 – 517,479	- - - - - - - -	7626	517,378 – 517,479	-	3	105	51.60	-3.08	0.26	0.991732
5552	dm3.chr3LHet	558,900 – 559,020	- - - - - - - -	7627	558,900 – 559,020	+	6	120	69.44	-2.03	0.42	0.939237
5553	dm3.chr3LHet	616,209 – 616,501	- - - - - - - -	7629	616,356 – 616,462	+	4	106	55.03	-1.42	0.36	0.900863
				7630	616,356 – 616,462	-	4	106	55.03	-2.14	0.55	0.999619
				7632	616,385 – 616,501	-	4	116	59.77	-1.66	0.58	0.996546
5554	dm3.chr3LHet	617,820 – 617,913	- - - - - - - -	7633	617,820 – 617,913	-	3	93	53.26	-1.92	0.39	0.958174
5556	dm3.chr3LHet	660,478 – 660,561	- - - - - - - -	7636	660,478 – 660,561	-	7	91	58.33	-0.73	0.48	0.908884
5558	dm3.chr3LHet	695,382 – 695,438	- - - - - - - -	7639	695,382 – 695,438	+	4	63	60.56	-1.76	0.50	0.984143
5559	dm3.chr3LHet	703,804 – 703,886	- - - - - - - -	7640	703,804 – 703,886	+	3	84	78.40	-2.17	0.75	0.948211
5562	dm3.chr3LHet	772,252 – 772,322	- - - intron="intron;ID=intron_FBgn0069977:2_FBgn0069977:1;Name=CG40467-in;Parent=FBtr0301118;parent_type=mRNA" - - - -	7643	772,252 – 772,322	+	3	74	63.13	-2.08	0.54	0.973819
5563	dm3.chr3LHet	837,521 – 837,640	- - - - - - - -	7645	837,521 – 837,640	-	4	120	62.23	-1.93	0.44	0.924779
5568	dm3.chr3LHet	969,035 – 969,162	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7650	969,035 – 969,162	-	5	128	77.86	-2.48	0.75	0.994137
5571	dm3.chr3LHet	1,024,777 – 1,024,860	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7653	1,024,777 – 1,024,860	+	4	89	57.83	-1.23	0.44	0.900334
5574	dm3.chr3LHet	1,040,986 – 1,041,049	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7658	1,040,986 – 1,041,049	-	6	63	79.05	-1.79	0.65	0.910425
5575	dm3.chr3LHet	1,041,184 – 1,041,291	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7659	1,041,184 – 1,041,291	+	8	115	66.34	-1.47	0.44	0.954634
5578	dm3.chr3LHet	1,091,621 – 1,091,675	- - - - - - - -	7662	1,091,621 – 1,091,675	+	3	60	74.44	-1.82	0.97	0.986873
5581	dm3.chr3LHet	1,184,870 – 1,184,923	- - - intron="intron;ID=intron_FBgn0058178:2_FBgn0058178:1;Name=CG40178-in;Parent=FBtr0113817,FBtr0113818;parent_type=mRNA" - - - -	7665	1,184,870 – 1,184,923	+	7	56	67.64	-1.03	0.67	0.977891
5585	dm3.chr3LHet	1,354,720 – 1,354,778	- - - intron="intron;ID=intron_FBgn0058178:10_FBgn0058178:9;Name=CG40178-in;Parent=FBtr0113817,FBtr0113818;parent_type=mRNA" - - - -	7672	1,354,720 – 1,354,778	-	4	58	76.44	-1.87	0.74	0.950394
5587	dm3.chr3LHet	1,427,020 – 1,427,070	- - - - - - - -	7674	1,427,020 – 1,427,070	+	3	59	50.91	-1.73	0.53	0.992260
5589	dm3.chr3LHet	1,529,835 – 1,529,894	- - - - - - - -	7676	1,529,835 – 1,529,894	+	4	59	77.68	-1.94	0.72	0.938232
5593	dm3.chr3LHet	1,653,551 – 1,653,610	- - - - - - - -	7682	1,653,551 – 1,653,610	-	3	59	89.83	-2.57	0.95	0.991946
5594	dm3.chr3LHet	1,654,358 – 1,654,444	- - - - - - - -	7684	1,654,358 – 1,654,444	-	3	102	69.31	-2.22	0.65	0.976393
5595	dm3.chr3LHet	1,750,961 – 1,751,069	- - - - - - - -	7685	1,750,961 – 1,751,069	+	3	118	53.20	-1.94	0.41	0.974237
5598	dm3.chr3LHet	1,790,016 – 1,790,072	- - - - - - - -	7688	1,790,016 – 1,790,072	-	7	58	65.91	-1.57	0.51	0.989820
5599	dm3.chr3LHet	1,791,651 – 1,791,724	- - - - - - - -	7689	1,791,651 – 1,791,724	+	4	74	51.63	-1.77	0.42	0.992568
5600	dm3.chr3LHet	1,805,291 – 1,805,388	- - - - - - - -	7690	1,805,291 – 1,805,388	+	5	100	76.02	-1.83	0.76	0.978230
5603	dm3.chr3LHet	1,848,457 – 1,848,536	- - - - - - - -	7696	1,848,457 – 1,848,536	-	3	91	52.11	-3.76	0.12	0.945505
5604	dm3.chr3LHet	1,848,829 – 1,848,927	- - - - - - - -	7697	1,848,829 – 1,848,924	+	5	120	73.33	-2.53	0.68	0.994487
5604	dm3.chr3LHet	1,848,829 – 1,848,927	- - - - - - - -	7698	1,848,829 – 1,848,927	+	5	120	73.82	-2.23	0.67	0.985472
5606	dm3.chr3LHet	1,985,254 – 1,985,312	- - - - - - - -	7700	1,985,254 – 1,985,312	-	4	59	58.09	-1.04	0.55	0.952153
5607	dm3.chr3LHet	1,996,805 – 1,996,901	- - - - - - - -	7701	1,996,805 – 1,996,901	+	3	96	57.29	-1.36	0.55	0.964546
5607	dm3.chr3LHet	1,996,805 – 1,996,901	- - - - - - - -	7702	1,996,805 – 1,996,901	-	3	96	57.29	-1.68	0.44	0.936470
5610	dm3.chr3LHet	2,024,167 – 2,024,262	- - - - - - - -	7705	2,024,167 – 2,024,262	+	4	105	67.43	-1.65	0.61	0.960014
5613	dm3.chr3LHet	2,077,501 – 2,077,557	- - - - - - - -	7709	2,077,501 – 2,077,557	+	3	57	69.51	-2.27	0.57	0.950578
5613	dm3.chr3LHet	2,077,501 – 2,077,557	- - - - - - - -	7710	2,077,501 – 2,077,557	-	3	57	69.51	-2.70	0.55	0.984906
5614	dm3.chr3LHet	2,092,578 – 2,092,701	- - - - - - - -	7711	2,092,578 – 2,092,701	-	4	123	50.22	-1.86	0.42	0.993999
5616	dm3.chr3LHet	2,208,936 – 2,209,017	- - - - - - - -	7713	2,208,936 – 2,209,017	-	5	88	50.30	-0.64	0.46	0.905663
5619	dm3.chr3LHet	2,311,446 – 2,311,543	- - - - - - - -	7716	2,311,446 – 2,311,543	-	4	119	63.09	-1.91	0.44	0.944785
5620	dm3.chr3LHet	2,321,467 – 2,321,544	- - - - - - - -	7717	2,321,467 – 2,321,544	+	3	78	67.38	-3.40	0.54	0.999005
5621	dm3.chr3LHet	2,378,635 – 2,378,745	- - - - - - - -	7718	2,378,635 – 2,378,745	-	3	117	74.00	-2.32	0.61	0.959458
5622	dm3.chr3LHet	2,383,764 – 2,383,819	- - - - - - - -	7719	2,383,764 – 2,383,819	-	3	55	93.94	-1.38	1.01	0.924811
5623	dm3.chr3LHet	2,421,944 – 2,421,999	- - - intron="intron;ID=intron_CG17023:2410017-2410075_CG17023:2423418-2423549;Name=Dbp80-in;Parent=FBtr0113714,FBtr0113715,FBtr0113716;parent_type=mRNA" - - - -	7720	2,421,944 – 2,421,999	-	3	56	48.80	-0.54	0.58	0.903696
5624	dm3.chr3LHet	2,445,663 – 2,445,739	- - - intron="intron;ID=intron_CG17023:2423612-2423807_CG17023:2454979-2455093;Name=Dbp80-in;Parent=FBtr0113714,FBtr0113715;parent_type=mRNA" - - - -	7721	2,445,663 – 2,445,739	+	8	77	63.25	-1.79	0.58	0.999119
5624	dm3.chr3LHet	2,445,663 – 2,445,739		7722	2,445,663 – 2,445,739	-	8	77	63.25	-1.40	0.46	0.983731
5627	dm3.chr3LHet	2,491,205 – 2,491,270	- - - intron="intron;ID=intron_CG17023:2473205-2473306_CG17023:2503938-2504073;Name=Dbp80-in;Parent=FBtr0113715;parent_type=mRNA" - - - -	7725	2,491,205 – 2,491,270	-	5	68	70.96	-1.22	0.72	0.938275
5629	dm3.chr3LHet	2,536,384 – 2,536,611	- - - intron="intron;ID=intron_CG17023:2503938-2504073_CG17023:2543666-2543828;Name=Dbp80-in;Parent=FBtr0113715;parent_type=mRNA" - - - -	7728	2,536,498 – 2,536,611	-	4	113	66.22	-1.20	0.67	0.950889
5630	dm3.chr3LHet	2,536,892 – 2,536,986	- - - intron="intron;ID=intron_CG17023:2503938-2504073_CG17023:2543666-2543828;Name=Dbp80-in;Parent=FBtr0113715;parent_type=mRNA" - - - -	7729	2,536,892 – 2,536,986	+	5	120	67.40	-2.37	0.87	0.998152
5630	dm3.chr3LHet	2,536,892 – 2,536,986		7730	2,536,892 – 2,536,986	-	5	120	67.40	-4.05	0.92	0.999090
5633	dm3.chr3L	118,882 – 118,947	- - - - - - - -	7733	118,882 – 118,947	+	3	65	56.92	-1.03	0.71	0.976912
5637	dm3.chr3L	156,540 – 156,640	- - - intron="intron;ID=intron_FBgn0035101:1_FBgn0035101:3;Name=p130CAS-in;Parent=FBtr0299864;parent_type=mRNA" - - - -	7738	156,540 – 156,640	+	5	108	73.68	-3.00	0.60	0.997475
5637	dm3.chr3L	156,540 – 156,640		7739	156,540 – 156,640	-	5	108	73.68	-2.43	0.63	0.990139
5638	dm3.chr3L	168,001 – 168,091	- - - intron="intron;ID=intron_FBgn0035101:3_FBgn0035101:4;Name=p130CAS-in;Parent=FBtr0301889,FBtr0299864;parent_type=mRNA" - - - -	7740	168,001 – 168,091	-	10	115	76.47	-2.91	0.52	0.994338
5640	dm3.chr3L	193,460 – 193,602	- - CDS="CDS;ID=CDS_FBgn0035106:2_476;Name=rno-cds;Parent=FBtr0305548;parent_type=mRNA" - - - - -	7742	193,460 – 193,571	-	7	119	71.09	-1.56	0.54	0.953618
5641	dm3.chr3L	198,435 – 198,528	- - CDS="CDS;ID=CDS_FBgn0035106:7_476;Name=rno-cds;Parent=FBtr0305548;parent_type=mRNA" - - - - -	7745	198,435 – 198,528	-	4	93	98.39	-1.81	0.97	0.921403
5643	dm3.chr3L	205,511 – 205,593	- - - intron="intron;ID=intron_FBgn0025592:6_FBgn0025592:4;Name=Gyk-in;Parent=FBtr0072530;parent_type=mRNA" - - - -	7747	205,511 – 205,593	-	14	82	74.29	-1.47	0.49	0.918022
5644	dm3.chr3L	228,492 – 228,604	FBnoncoding="ncRNA;ID=FBtr0304059;Name=CR42862-RA;Parent=FBgn0262109;Dbxref=FlyBase_Annotation_IDs:CR42862-RA;score_text=Strongly" - - - - - - -	7748	228,492 – 228,604	+	12	118	86.58	-3.12	0.74	0.995487
5645	dm3.chr3L	251,981 – 252,072	- - CDS="CDS;ID=CDS_FBgn0024806:4_470;Name=DIP2-cds;Parent=FBtr0072520,FBtr0305325;parent_type=mRNA" - - - - -	7749	251,981 – 252,072	-	13	99	70.82	-0.96	0.54	0.904572
5647	dm3.chr3L	261,854 – 261,959	FBnoncoding="snoRNA;ID=FBtr0113599;Name=snoRNA:Psi18S-996-RA;Parent=FBgn0083014;Dbxref=FlyBase_Annotation_IDs:CR34630-RA,REFSEQ:NR_003839;score_text=Weakly" - - intron="intron;ID=intron_CG7008:2_CG7008:3;Name=Tudor-SN-in;Parent=FBtr0072519;parent_type=mRNA" - - - -	7752	261,854 – 261,959	+	12	120	65.02	-2.31	0.38	0.995735
5647	dm3.chr3L	261,854 – 261,959		7753	261,854 – 261,959	-	12	120	65.02	-2.47	0.48	0.999508
5648	dm3.chr3L	263,330 – 263,500	- - - intron="intron;ID=intron_CG7008:1_CG7008:2;Name=Tudor-SN-in;Parent=FBtr0072519;parent_type=mRNA" - - - -	7754	263,330 – 263,421	-	5	96	78.99	-2.40	0.70	0.988058
5650	dm3.chr3L	271,827 – 271,962	- - - intron="intron;ID=intron_CG18321:1_CG18321:2;Name=miple2-in;Parent=FBtr0072506;parent_type=mRNA" - - - -	7757	271,827 – 271,935	+	5	113	90.37	-3.01	0.85	0.992238
5652	dm3.chr3L	293,118 – 293,226	- - - intron="intron;ID=intron_FBgn0259743:2_FBgn0259743:6;Name=RhoGEF3-in;Parent=FBtr0299988;parent_type=mRNA" - - - -	7763	293,118 – 293,226	-	6	123	71.45	-1.69	0.56	0.946568
5655	dm3.chr3L	295,757 – 295,884	- - - intron="intron;ID=intron_FBgn0259743:3_FBgn0259743:6;Name=RhoGEF3-in;Parent=FBtr0299987;parent_type=mRNA" - - - -	7768	295,778 – 295,884	+	6	114	75.89	-2.74	0.45	0.973323
5657	dm3.chr3L	314,198 – 314,281	- - - - - - - -	7772	314,198 – 314,281	-	6	83	80.08	-2.55	0.58	0.976885
5658	dm3.chr3L	314,465 – 314,589	- - - intron="intron;ID=intron_CG7004:13_CG7004:2;Name=fwd-in;Parent=FBtr0072516;parent_type=mRNA" - - - -	7774	314,465 – 314,589	-	3	133	64.91	-1.62	0.58	0.907940
5659	dm3.chr3L	315,212 – 315,439	- - - intron="intron;ID=intron_CG7004:13_CG7004:2;Name=fwd-in;Parent=FBtr0072516;parent_type=mRNA" - - - -	7776	315,291 – 315,403	+	4	112	77.38	-2.16	0.64	0.941170
5659	dm3.chr3L	315,212 – 315,439		7777	315,331 – 315,439	+	4	108	80.09	-2.40	0.60	0.919185
5667	dm3.chr3L	412,712 – 412,793	- - - - - - - -	7786	412,712 – 412,793	+	5	84	91.00	-2.81	0.80	0.974914
5669	dm3.chr3L	437,806 – 437,898	- - - intron="intron;ID=intron_FBgn0001316:5_FBgn0001316:4;Name=klar-in;Parent=FBtr0112807;parent_type=mRNA" - - - -	7789	437,806 – 437,898	+	7	98	75.36	-2.86	0.43	0.975666
5673	dm3.chr3L	444,783 – 444,902	- - CDS="CDS;ID=CDS_FBgn0001316:11_370;Name=klar-cds;Parent=FBtr0112808;parent_type=mRNA" - - - - -	7794	444,783 – 444,902	+	12	120	77.07	-1.75	0.58	0.956425
5686	dm3.chr3L	504,201 – 504,291	- - - - - - - -	7811	504,201 – 504,291	+	4	120	78.59	-1.98	0.74	0.912431
5686	dm3.chr3L	504,201 – 504,291	- - - - - - - -	7812	504,201 – 504,291	-	4	120	78.59	-2.31	0.78	0.977579
5690	dm3.chr3L	521,943 – 522,032	- - - intron="intron;ID=intron_FBgn0001316:23_FBgn0001316:21;Name=klar-in;Parent=FBtr0072565,FBtr0112808;parent_type=mRNA" - - - -	7816	521,943 – 522,032	-	5	96	61.66	-2.58	0.25	0.941815
5691	dm3.chr3L	523,637 – 523,738	- - - intron="intron;ID=intron_FBgn0001316:23_FBgn0001316:21;Name=klar-in;Parent=FBtr0072565,FBtr0112808;parent_type=mRNA" - - - -	7817	523,637 – 523,738	-	5	106	78.81	-2.20	0.65	0.960149
5693	dm3.chr3L	530,496 – 530,604	- - - intron="intron;ID=intron_FBgn0001316:23_FBgn0001316:21;Name=klar-in;Parent=FBtr0072565,FBtr0112808;parent_type=mRNA" - - - -	7820	530,496 – 530,604	-	5	120	76.97	-2.27	0.60	0.964530
5697	dm3.chr3L	558,879 – 558,988	- - - intron="intron;ID=intron_FBgn0035142:3_FBgn0035142:4;Name=hipk-in;Parent=FBtr0072551,FBtr0072552;parent_type=mRNA" - - - -	7826	558,886 – 558,988	+	7	110	81.96	-2.17	0.67	0.940667
5704	dm3.chr3L	583,289 – 583,367	- - - - - - - -	7834	583,289 – 583,367	-	12	87	78.28	-2.18	0.70	0.990949
5705	dm3.chr3L	585,750 – 585,827	- - - intron="intron;ID=intron_FBgn0035144:4_FBgn0035144:3;Name=CG17181-in;Parent=FBtr0072563;parent_type=mRNA" - - - -	7835	585,750 – 585,827	+	7	77	67.41	-1.87	0.57	0.998008
5706	dm3.chr3L	598,823 – 598,959	- - - - - - - -	7838	598,852 – 598,959	-	6	114	53.95	-3.78	-0.00	0.911608
5708	dm3.chr3L	604,346 – 604,408	- - - - - - - -	7840	604,346 – 604,408	+	7	62	72.72	-2.76	0.69	0.999318
5708	dm3.chr3L	604,346 – 604,408	- - - - - - - -	7841	604,346 – 604,408	-	7	62	72.72	-1.41	0.72	0.977638
5709	dm3.chr3L	608,769 – 608,867	- - - - - - - -	7842	608,769 – 608,867	+	7	119	77.14	-2.43	0.65	0.985990
5710	dm3.chr3L	620,530 – 620,625	- - - - - - - -	7843	620,530 – 620,625	+	3	99	92.57	-2.49	0.90	0.974347
5712	dm3.chr3L	621,149 – 621,258	- - - - - - - -	7845	621,149 – 621,258	-	10	120	85.03	-2.41	0.65	0.950762
5715	dm3.chr3L	642,204 – 642,298	FBnoncoding="pre_miRNA;ID=FBtr0304468;Name=ban-RM;Parent=FBgn0262451;Alias=CR43018-RM;Dbxref=FlyBase_Annotation_IDs:CR43018-RM,miRBase:MI0000387" - - - "Rfam_10.0=RF00727;bantam;AANI01017339.1/10975-11064\|1.9e-42" "Noncode_2.0=n178713_u177811_NW_045745_miRNA_Anopheles\|7.6e-08" "unique_Noncode_2.0=u177811_miRNA_Anopheles\|6.6e-08" "mirBase_v16=dya-bantam\|3.4e-41"	7848	642,204 – 642,298	+	13	102	94.35	-3.61	0.80	0.995065
5718	dm3.chr3L	661,889 – 661,984	- - - - - - - -	7851	661,889 – 661,979	+	4	101	67.90	-1.76	0.68	0.987595
5718	dm3.chr3L	661,889 – 661,984	- - - - - - - -	7853	661,889 – 661,984	+	4	101	70.37	-1.24	0.69	0.902879
5719	dm3.chr3L	663,920 – 663,995	- - - - - - - -	7855	663,920 – 663,995	+	10	79	79.59	-2.77	0.56	0.995331
5722	dm3.chr3L	670,106 – 670,159	- - - - - - - -	7859	670,106 – 670,159	-	4	53	74.53	-2.16	0.66	0.978598
5724	dm3.chr3L	684,910 – 685,023	- - - intron="intron;ID=intron_CG3371:1_CG3371:2;Name=CG3371-in;Parent=FBtr0072610;parent_type=mRNA" - - - -	7861	684,910 – 685,023	+	5	120	76.26	-1.69	0.70	0.924230
5725	dm3.chr3L	691,349 – 691,473	- - - - - - - -	7862	691,349 – 691,473	+	13	137	61.07	-2.22	0.45	0.999448
5726	dm3.chr3L	694,741 – 694,989	- - - - - - - -	7866	694,781 – 694,896	-	12	116	76.67	-1.80	0.68	0.980887
				7867	694,861 – 694,961	-	9	103	68.60	-1.84	0.45	0.973122
				7868	694,896 – 694,989	-	12	110	64.12	-1.93	0.33	0.943674
5728	dm3.chr3L	704,610 – 704,701	- - - - - - - -	7871	704,610 – 704,701	-	6	106	81.39	-2.42	0.62	0.964021
5731	dm3.chr3L	713,145 – 713,258	- - - - - - - -	7874	713,145 – 713,258	+	6	120	65.49	-1.33	0.50	0.955610
5736	dm3.chr3L	762,680 – 762,777	- - - - - - - -	7880	762,680 – 762,777	+	6	104	75.68	-2.61	0.62	0.994502
5736	dm3.chr3L	762,680 – 762,777	- - - - - - - -	7881	762,680 – 762,777	-	6	104	75.68	-2.01	0.59	0.948233
5737	dm3.chr3L	763,156 – 763,212	- - - - - - - -	7882	763,156 – 763,212	+	4	56	92.66	-2.27	0.89	0.952718
5741	dm3.chr3L	784,443 – 784,535	- - - - - - - -	7886	784,443 – 784,535	+	8	93	88.54	-3.56	0.51	0.969793
5742	dm3.chr3L	791,104 – 791,229	- - - - - - - -	7888	791,104 – 791,194	-	12	118	78.56	-2.36	0.70	0.991204
5743	dm3.chr3L	791,996 – 792,087	- - - - - - - -	7891	791,996 – 792,087	-	10	112	85.19	-2.30	0.79	0.970919
5744	dm3.chr3L	794,357 – 794,526	- - - - - - - -	7893	794,391 – 794,492	+	7	112	77.51	-2.06	0.62	0.964058
5744	dm3.chr3L	794,357 – 794,526	- - - - - - - -	7894	794,391 – 794,492	-	7	112	77.51	-2.84	0.48	0.984080
5748	dm3.chr3L	802,608 – 802,723	- - - - - - - -	7899	802,608 – 802,704	+	8	114	70.72	-1.41	0.57	0.944720
5748	dm3.chr3L	802,608 – 802,723	- - - - - - - -	7900	802,633 – 802,723	+	10	119	70.57	-1.39	0.56	0.938852
5749	dm3.chr3L	808,347 – 808,438	- - - - - - - -	7901	808,347 – 808,438	+	11	111	80.39	-2.71	0.64	0.989385
5749	dm3.chr3L	808,347 – 808,438	- - - - - - - -	7902	808,347 – 808,438	-	11	111	80.39	-3.08	0.51	0.985556
5750	dm3.chr3L	816,614 – 816,707	- - - - - - - -	7903	816,614 – 816,707	+	4	114	50.67	-2.99	0.37	0.999772
5750	dm3.chr3L	816,614 – 816,707	- - - - - - - -	7904	816,614 – 816,707	-	4	114	50.67	-1.75	0.49	0.998541
5753	dm3.chr3L	831,929 – 832,036	FBnoncoding="snoRNA;ID=FBtr0113600;Name=snoRNA:Psi18S-110-RA;Parent=FBgn0083057;Dbxref=FlyBase_Annotation_IDs:CR34631-RA,REFSEQ:NR_003846;score_text=Weakly" - - intron="intron;ID=intron_CG13900:3_CG13900:4;Name=CG13900-in;Parent=FBtr0072597;parent_type=mRNA" - - - -	7907	831,929 – 832,019	-	12	108	64.58	-2.00	0.51	0.998542
5753	dm3.chr3L	831,929 – 832,036		7908	831,946 – 832,036	-	12	98	59.40	-1.87	0.38	0.995983
5755	dm3.chr3L	890,237 – 890,448	- - - intron="intron;ID=intron_CG32479:5_CG32479:6;Name=CG32479-in;Parent=FBtr0072589;parent_type=mRNA" - - - -	7910	890,237 – 890,348	+	11	112	65.38	-1.81	0.67	0.999551
				7911	890,237 – 890,348	-	11	112	65.38	-1.81	0.48	0.997773
				7912	890,271 – 890,383	+	12	119	70.64	-1.37	0.62	0.988590
				7914	890,308 – 890,417	+	12	119	67.48	-1.95	0.40	0.978253
				7915	890,348 – 890,448	+	11	114	56.45	-2.49	0.32	0.998384
5756	dm3.chr3L	913,432 – 913,485	- - - - - - - -	7916	913,432 – 913,485	+	5	53	94.15	-1.47	0.99	0.924876
5759	dm3.chr3L	923,029 – 923,125	- - - intron="intron;ID=intron_FBgn0261914:3_FBgn0261914:4;Name=Glut1-in;Parent=FBtr0306033,FBtr0306035,FBtr0306038;parent_type=mRNA" - - - -	7919	923,029 – 923,125	-	9	113	77.10	-1.89	0.64	0.952008
5760	dm3.chr3L	932,242 – 932,434	- - - intron="intron;ID=intron_FBgn0261914:3_FBgn0261914:4;Name=Glut1-in;Parent=FBtr0306033,FBtr0306035,FBtr0306038;parent_type=mRNA" - - - -	7921	932,277 – 932,396	+	3	120	52.51	-1.96	0.47	0.995438
5760	dm3.chr3L	932,242 – 932,434		7922	932,317 – 932,434	+	3	120	52.59	-2.28	0.38	0.985375
5764	dm3.chr3L	953,904 – 953,995	- - - intron="intron;ID=intron_FBgn0261914:4_FBgn0261914:7;Name=Glut1-in;Parent=FBtr0306032,FBtr0306033,FBtr0306035,FBtr0306038;parent_type=mRNA" - - - -	7927	953,904 – 953,995	-	7	100	77.67	-2.27	0.50	0.930152
5767	dm3.chr3L	975,841 – 975,943	- - - intron="intron;ID=intron_FBgn0261914:11_FBgn0261914:12;Name=Glut1-in;Parent=FBtr0306033;parent_type=mRNA" - - - -	7931	975,841 – 975,943	+	6	111	72.58	-3.29	0.59	0.999526
5767	dm3.chr3L	975,841 – 975,943		7932	975,841 – 975,943	-	6	111	72.58	-3.68	0.62	0.999793
5769	dm3.chr3L	1,010,891 – 1,010,981	- - - intron="intron;ID=intron_FBgn0024277:15_FBgn0024277:14;Name=trio-in;Parent=FBtr0072646;parent_type=mRNA" - - - -	7934	1,010,891 – 1,010,981	-	7	104	73.33	-1.34	0.70	0.965312
5775	dm3.chr3L	1,054,226 – 1,054,347	- - - intron="intron;ID=intron_CG9097:1_CG9097:2;Name=bab1-in;Parent=FBtr0072642;parent_type=mRNA" - - - -	7940	1,054,226 – 1,054,316	-	4	98	47.43	-3.12	0.25	0.998790
5775	dm3.chr3L	1,054,226 – 1,054,347		7942	1,054,257 – 1,054,347	-	4	94	52.85	-3.57	0.24	0.998896
5778	dm3.chr3L	1,071,921 – 1,072,022	- - - intron="intron;ID=intron_CG9097:1_CG9097:2;Name=bab1-in;Parent=FBtr0072642;parent_type=mRNA" - - - -	7946	1,071,921 – 1,072,022	+	10	102	72.87	-1.81	0.75	0.996439
5783	dm3.chr3L	1,119,858 – 1,119,927	- - - - - - - -	7951	1,119,858 – 1,119,927	+	6	70	84.33	-2.54	0.65	0.958156
5784	dm3.chr3L	1,126,209 – 1,126,307	- - - - - - - -	7952	1,126,209 – 1,126,307	+	10	112	84.77	-4.11	0.32	0.973439
5787	dm3.chr3L	1,188,465 – 1,188,565	- - - - - - - -	7955	1,188,465 – 1,188,565	-	5	100	92.50	-2.86	0.78	0.964304
5789	dm3.chr3L	1,212,786 – 1,212,886	- - - intron="intron;ID=intron_FBgn0260963:1_FBgn0260963:2;Name=mwh-in;Parent=FBtr0072632;parent_type=mRNA" - - - -	7957	1,212,786 – 1,212,886	-	8	103	59.36	-0.92	0.49	0.957261
5790	dm3.chr3L	1,219,871 – 1,219,988	- - - intron="intron;ID=intron_FBgn0260963:1_FBgn0260963:2;Name=mwh-in;Parent=FBtr0072632;parent_type=mRNA" - - - -	7958	1,219,871 – 1,219,988	+	6	129	57.09	-1.61	0.59	0.998643
5790	dm3.chr3L	1,219,871 – 1,219,988		7959	1,219,871 – 1,219,988	-	6	129	57.09	-0.82	0.53	0.958110
5792	dm3.chr3L	1,285,211 – 1,285,291	- - - intron="intron;ID=intron_FBgn0052333:4_FBgn0052333:6;Name=CG32333-in;Parent=FBtr0100256;parent_type=mRNA" - - - -	7962	1,285,211 – 1,285,291	-	7	89	68.82	-1.73	0.45	0.932512
5796	dm3.chr3L	1,348,196 – 1,348,325	- - - intron="intron;ID=intron_CG9181:10_CG9181:2;Name=Ptp61F-in;Parent=FBtr0072719;parent_type=mRNA" - - - -	7966	1,348,196 – 1,348,307	+	5	111	95.03	-2.93	0.90	0.989386
5796	dm3.chr3L	1,348,196 – 1,348,325		7967	1,348,196 – 1,348,307	-	5	111	95.03	-2.05	0.90	0.906916
5797	dm3.chr3L	1,349,219 – 1,349,293	- - - - - - - -	7969	1,349,219 – 1,349,293	+	7	77	71.56	-2.12	0.52	0.992103
5797	dm3.chr3L	1,349,219 – 1,349,293	- - - - - - - -	7970	1,349,219 – 1,349,293	-	7	77	71.56	-1.90	0.44	0.938492
5799	dm3.chr3L	1,379,933 – 1,380,027	FBnoncoding="tRNA;ID=FBtr0072682;Name=tRNA:CR32330-RA;Parent=FBgn0052330;Alias=CR32330-RA;Dbxref=FlyBase_Annotation_IDs:CR32330-RA;score_text=Weakly" tRNAscann="Glu_chr3L_trna3" - intron="intron;ID=intron_CG1214:1_CG1214:2;Name=ru-in;Parent=FBtr0072681;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|4.2e-34" - - -	7972	1,379,933 – 1,380,027	-	11	96	81.22	-1.64	0.69	0.915278
5800	dm3.chr3L	1,380,237 – 1,380,322	FBnoncoding="tRNA;ID=FBtr0072683;Name=tRNA:CR32328-RA;Parent=FBgn0052328;Alias=CR32328-RA;Dbxref=FlyBase_Annotation_IDs:CR32328-RA;score_text=Weakly" tRNAscann="Glu_chr3L_trna4" - intron="intron;ID=intron_CG1214:1_CG1214:2;Name=ru-in;Parent=FBtr0072681;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|3.7e-34" - - -	7974	1,380,237 – 1,380,322	-	12	85	87.32	-1.49	0.97	0.959750
5801	dm3.chr3L	1,380,517 – 1,380,616	FBnoncoding="tRNA;ID=FBtr0072684;Name=tRNA:CR32329-RA;Parent=FBgn0052329;Alias=CR32329-RA;Dbxref=FlyBase_Annotation_IDs:CR32329-RA;score_text=Weakly" tRNAscann="Glu_chr3L_trna5" - intron="intron;ID=intron_CG1214:1_CG1214:2;Name=ru-in;Parent=FBtr0072681;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|4.5e-34" - - -	7975	1,380,517 – 1,380,616	+	13	110	68.26	-0.70	0.74	0.982932
5801	dm3.chr3L	1,380,517 – 1,380,616		7976	1,380,517 – 1,380,616	-	13	110	68.26	-1.59	0.70	0.998630
5802	dm3.chr3L	1,385,863 – 1,385,960	- - - intron="intron;ID=intron_CG1214:2_CG1214:3;Name=ru-in;Parent=FBtr0072681;parent_type=mRNA" - - - -	7977	1,385,863 – 1,385,960	-	9	105	64.97	-1.35	0.53	0.989177
5804	dm3.chr3L	1,397,930 – 1,398,008	FBnoncoding="tRNA;ID=FBtr0072686;Name=tRNA:E4:62Ab-RA;Parent=FBgn0011852;Dbxref=FlyBase_Annotation_IDs:CR32326-RA;score_text=Weakly" tRNAscann="Glu_chr3L_trna7" - - "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|3.3e-34" - - -	7979	1,397,930 – 1,398,008	+	12	97	82.44	-1.12	0.97	0.929230
5804	dm3.chr3L	1,397,930 – 1,398,008		7980	1,397,930 – 1,398,008	-	12	97	82.44	-1.94	0.95	0.988953
5805	dm3.chr3L	1,398,205 – 1,398,283	- - - - "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|4.0e-12" - - -	7982	1,398,205 – 1,398,283	-	6	82	66.93	-1.22	0.79	0.988390
5807	dm3.chr3L	1,401,425 – 1,401,559	FBnoncoding="tRNA;ID=FBtr0072690;Name=tRNA:E4:62Ad-RA;Parent=FBgn0011854;Dbxref=FlyBase_Annotation_IDs:CR32323-RA;score_text=Strongly" tRNAscann="Glu_chr3L_trna10" - - "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|6.4e-34" - - -	7984	1,401,425 – 1,401,559	+	11	144	61.98	-0.86	0.70	0.995600
5807	dm3.chr3L	1,401,425 – 1,401,559		7985	1,401,425 – 1,401,559	-	11	144	61.98	-0.81	0.53	0.975607
5808	dm3.chr3L	1,413,206 – 1,413,296	- - - - - - - -	7986	1,413,206 – 1,413,296	+	7	96	74.85	-3.08	0.29	0.936995
5815	dm3.chr3L	1,466,258 – 1,466,392	- - - intron="intron;ID=intron_CG1004:2_CG1004:3;Name=rho-in;Parent=FBtr0072694;parent_type=mRNA" - - - -	7994	1,466,258 – 1,466,392	-	6	138	81.15	-2.23	0.69	0.966898
5816	dm3.chr3L	1,469,277 – 1,469,423	- - - - - - - -	7995	1,469,277 – 1,469,389	-	6	122	69.24	-1.26	0.69	0.957387
5816	dm3.chr3L	1,469,277 – 1,469,423	- - - - - - - -	7996	1,469,313 – 1,469,423	-	6	116	68.83	-1.36	0.69	0.980877
5817	dm3.chr3L	1,488,767 – 1,489,056	FBnoncoding="snoRNA;ID=FBtr0091635;Name=snoRNA:Psi28S-2622-RA;Parent=FBgn0086670;Alias=snoRNA:3-RA;Dbxref=FlyBase_Annotation_IDs:CR33656-RA,REFSEQ:NR_002472;score_text=Weakly" - - intron="intron;ID=intron_CG33166:1_CG33166:2;Name=stet-in;Parent=FBtr0072712;parent_type=mRNA" - - - -	7998	1,488,796 – 1,488,887	+	3	92	73.68	-2.46	0.79	0.992192
5817	dm3.chr3L	1,488,767 – 1,489,056		7999	1,488,796 – 1,488,887	-	3	92	73.68	-3.48	0.56	0.996978
5821	dm3.chr3L	1,544,614 – 1,544,717	- - - - - - - -	8005	1,544,614 – 1,544,717	-	5	108	92.93	-2.46	0.85	0.949520
5822	dm3.chr3L	1,548,100 – 1,548,359	- - - intron="intron;ID=intron_CG1049:5_CG1049:2;Name=Cct1-in;Parent=FBtr0072739;parent_type=mRNA" - - - -	8006	1,548,100 – 1,548,215	-	6	121	75.26	-1.88	0.55	0.919154
5822	dm3.chr3L	1,548,100 – 1,548,359		8008	1,548,251 – 1,548,359	+	6	109	80.00	-3.12	0.58	0.995989
5823	dm3.chr3L	1,557,976 – 1,558,147	- - - - - - - -	8010	1,558,008 – 1,558,118	-	12	114	77.40	-1.85	0.52	0.902230
5823	dm3.chr3L	1,557,976 – 1,558,147	- - - - - - - -	8011	1,558,048 – 1,558,147	-	12	107	65.24	-2.24	0.57	0.999596
5830	dm3.chr3L	1,632,874 – 1,632,965	- - - intron="intron;ID=intron_FBgn0013342:3_FBgn0013342:2;Name=n-syb-in;Parent=FBtr0302310;parent_type=mRNA" - - - -	8019	1,632,874 – 1,632,965	-	6	96	64.24	-2.99	0.39	0.999173
5832	dm3.chr3L	1,654,488 – 1,654,589	- - - - - - - -	8021	1,654,488 – 1,654,589	-	12	108	64.41	-1.28	0.45	0.978915
5833	dm3.chr3L	1,655,729 – 1,655,859	- - - intron="intron;ID=intron_FBgn0035253:7_FBgn0035253:5;Name=CG7971-in;Parent=FBtr0072807,FBtr0072806;parent_type=mRNA" - - - -	8022	1,655,729 – 1,655,837	-	12	117	84.08	-1.96	0.82	0.967125
5833	dm3.chr3L	1,655,729 – 1,655,859		8024	1,655,763 – 1,655,859	-	13	120	68.14	-1.73	0.57	0.991533
5837	dm3.chr3L	1,668,507 – 1,668,752	- - CDS="CDS;ID=CDS_FBgn0026372:3_400;Name=RpL23A-cds;Parent=FBtr0072805;parent_type=mRNA" - - - - -	8030	1,668,618 – 1,668,718	+	12	119	81.93	-2.14	0.62	0.920298
5837	dm3.chr3L	1,668,507 – 1,668,752		8032	1,668,658 – 1,668,752	+	12	114	61.29	-1.54	0.36	0.913468
5838	dm3.chr3L	1,670,883 – 1,671,003	- - - intron="intron;ID=intron_CG13930:2_CG13930:3;Name=CG13930-in;Parent=FBtr0072803;parent_type=mRNA" - - - -	8033	1,670,883 – 1,671,003	-	4	120	63.65	-0.99	0.62	0.904504
5842	dm3.chr3L	1,683,780 – 1,683,874	- - - intron="intron;ID=intron_FBgn0035260:1_FBgn0035260:3;Name=CG7991-in;Parent=FBtr0303102;parent_type=mRNA" - - - -	8037	1,683,780 – 1,683,874	+	8	107	60.73	-3.25	0.18	0.984987
5846	dm3.chr3L	1,723,428 – 1,723,512	- - - intron="intron;ID=intron_FBgn0027594:11_FBgn0027594:10;Name=drpr-in;Parent=FBtr0072799;parent_type=mRNA" - - - -	8041	1,723,428 – 1,723,512	-	5	86	80.17	-3.46	0.41	0.975617
5848	dm3.chr3L	1,737,792 – 1,737,899	- - - - - - - -	8044	1,737,792 – 1,737,899	-	8	117	71.79	-1.88	0.46	0.932289
5850	dm3.chr3L	1,739,849 – 1,739,941	- - - intron="intron;ID=intron_FBgn0035266:3_FBgn0035266:5;Name=CG7995-in;Parent=FBtr0072770;parent_type=mRNA" - - - -	8046	1,739,849 – 1,739,941	+	6	101	80.00	-1.94	0.66	0.907834
5850	dm3.chr3L	1,739,849 – 1,739,941		8047	1,739,849 – 1,739,941	-	6	101	80.00	-2.51	0.58	0.963494
5856	dm3.chr3L	1,781,212 – 1,781,332	- - CDS="CDS;ID=CDS_CG1977:5_274;Name=alpha-Spec-cds;Parent=FBtr0072789;parent_type=mRNA" - - - - -	8054	1,781,212 – 1,781,332	-	15	120	90.02	-2.37	0.77	0.953124
5859	dm3.chr3L	1,811,474 – 1,811,527	- - - intron="intron;ID=intron_FBgn0027790:1_FBgn0027790:2;Name=GV1-in;Parent=FBtr0072784,FBtr0072785;parent_type=mRNA" - - - -	8059	1,811,474 – 1,811,527	+	5	53	94.71	-1.66	0.97	0.926888
5866	dm3.chr3L	1,913,604 – 1,913,706	- - - - - - - -	8068	1,913,604 – 1,913,706	+	5	107	79.04	-2.57	0.58	0.969437
5866	dm3.chr3L	1,913,604 – 1,913,706	- - - - - - - -	8069	1,913,604 – 1,913,706	-	5	107	79.04	-2.90	0.50	0.971249
5867	dm3.chr3L	1,913,843 – 1,913,954	- - - - - - - -	8070	1,913,843 – 1,913,954	-	7	121	65.46	-1.63	0.41	0.908346
5868	dm3.chr3L	1,922,134 – 1,922,227	- - - intron="intron;ID=intron_FBgn0250756:1_FBgn0250756:2;Name=Dbx-in;Parent=FBtr0290136;parent_type=mRNA" - - - -	8071	1,922,134 – 1,922,227	+	11	109	79.27	-1.57	0.85	0.969684
5870	dm3.chr3L	1,925,639 – 1,925,741	FBnoncoding="tRNA;ID=FBtr0072840;Name=tRNA:CR32312-RA;Parent=FBgn0052312;Alias=CR32312-RA;Dbxref=FlyBase_Annotation_IDs:CR32312-RA;score_text=Weakly" tRNAscann="Cys_chr3L_trna12" - intron="intron;ID=intron_FBgn0250756:4_FBgn0250756:5;Name=Dbx-in;Parent=FBtr0290136;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AASR01018716.1/406-477\|2.8e-29" - - -	8073	1,925,639 – 1,925,741	+	12	117	67.79	-0.57	0.65	0.935162
5870	dm3.chr3L	1,925,639 – 1,925,741		8074	1,925,639 – 1,925,741	-	12	117	67.79	-1.01	0.56	0.961095
5871	dm3.chr3L	1,927,953 – 1,928,045	- - - intron="intron;ID=intron_FBgn0250756:4_FBgn0250756:5;Name=Dbx-in;Parent=FBtr0290136;parent_type=mRNA" - - - -	8075	1,927,953 – 1,928,045	-	7	104	67.27	-1.09	0.66	0.972887
5872	dm3.chr3L	1,928,298 – 1,928,392	- - - intron="intron;ID=intron_FBgn0250756:4_FBgn0250756:5;Name=Dbx-in;Parent=FBtr0290136;parent_type=mRNA" - - - -	8076	1,928,298 – 1,928,392	+	12	121	81.13	-2.18	0.74	0.979321
5875	dm3.chr3L	1,984,991 – 1,985,099	- - - - - - - -	8079	1,984,991 – 1,985,099	+	5	134	71.87	-1.59	0.73	0.940853
5876	dm3.chr3L	2,000,924 – 2,001,015	- - - - - - - -	8081	2,000,924 – 2,001,015	+	5	91	90.27	-2.92	0.87	0.992080
5876	dm3.chr3L	2,000,924 – 2,001,015	- - - - - - - -	8082	2,000,924 – 2,001,015	-	5	91	90.27	-2.46	0.86	0.972546
5881	dm3.chr3L	2,036,631 – 2,036,692	- - - - - - - -	8087	2,036,631 – 2,036,692	+	7	75	64.25	-1.92	0.48	0.993837
5882	dm3.chr3L	2,037,532 – 2,037,652	- - CDS="CDS;ID=CDS_FBgn0259701:2_342;Name=CG42355-cds;Parent=FBtr0299954;parent_type=mRNA" - - - - -	8088	2,037,532 – 2,037,652	+	6	120	75.78	-2.23	0.50	0.957642
5883	dm3.chr3L	2,087,058 – 2,087,233	- - CDS="CDS;ID=CDS_FBgn0003432:23_360;Name=sls-cds;Parent=FBtr0072849;parent_type=mRNA" - - - - -	8091	2,087,086 – 2,087,203	-	11	119	77.61	-1.54	0.77	0.976844
5883	dm3.chr3L	2,087,058 – 2,087,233		8092	2,087,126 – 2,087,233	-	11	110	69.98	-2.55	0.78	0.999596
5884	dm3.chr3L	2,105,427 – 2,105,547	- - CDS="CDS;ID=CDS_FBgn0003432:36_360;Name=sls-cds;Parent=FBtr0072849;parent_type=mRNA" - - - - -	8093	2,105,427 – 2,105,547	-	15	120	77.83	-2.88	0.30	0.911459
5887	dm3.chr3L	2,142,143 – 2,142,235	- - - intron="intron;ID=intron_FBgn0052311:20_FBgn0052311:19;Name=zormin-in;Parent=FBtr0089864,FBtr0110856,FBtr0110857,FBtr0110858;parent_type=mRNA" - - - -	8096	2,142,143 – 2,142,235	-	7	93	76.43	-1.88	0.63	0.979030
5889	dm3.chr3L	2,149,714 – 2,149,813	- - CDS="CDS;ID=CDS_FBgn0052311:20_332;Name=zormin-cds;Parent=FBtr0110858;parent_type=mRNA" - - - - -	8098	2,149,714 – 2,149,813	+	11	102	69.66	-0.76	0.56	0.924950
5890	dm3.chr3L	2,159,233 – 2,159,351	- - - intron="intron;ID=intron_FBgn0035308:8_FBgn0035308:6;Name=CG15822-in;Parent=FBtr0114630;parent_type=mRNA" - - - -	8099	2,159,233 – 2,159,351	+	9	120	72.37	-2.15	0.37	0.904482
5895	dm3.chr3L	2,209,606 – 2,209,696	- - - - - - - -	8107	2,209,606 – 2,209,696	-	5	97	87.63	-1.91	0.86	0.919867
5896	dm3.chr3L	2,213,087 – 2,213,180	- - - - - - - -	8108	2,213,087 – 2,213,180	+	12	118	81.46	-2.24	0.66	0.954489
5899	dm3.chr3L	2,273,696 – 2,273,842	FBnoncoding="tRNA;ID=FBtr0072882;Name=tRNA:CR32303-RA;Parent=FBgn0052303;Alias=CR32303-RA;Dbxref=FlyBase_Annotation_IDs:CR32303-RA;score_text=Weakly" tRNAscann="Cys_chr3L_trna13" - - "Rfam_10.0=RF00005;tRNA;ABJB010216966.1/262-333\|1.0e-26" - - -	8113	2,273,696 – 2,273,842	-	13	165	68.86	-1.20	0.52	0.954302
5900	dm3.chr3L	2,287,825 – 2,287,927	- - - intron="intron;ID=intron_FBgn0035330:1_FBgn0035330:3;Name=CG13802-in;Parent=FBtr0113127;parent_type=mRNA" - - - -	8114	2,287,825 – 2,287,927	+	6	114	80.00	-2.20	0.68	0.964742
5904	dm3.chr3L	2,346,258 – 2,346,350	- - - - - - - -	8119	2,346,258 – 2,346,350	+	6	98	70.14	-2.72	0.46	0.997291
5904	dm3.chr3L	2,346,258 – 2,346,350	- - - - - - - -	8120	2,346,258 – 2,346,350	-	6	98	70.14	-2.49	0.45	0.993507
5905	dm3.chr3L	2,362,816 – 2,362,986	- - - - - - - -	8121	2,362,816 – 2,362,926	-	5	110	92.45	-3.08	0.92	0.995529
5905	dm3.chr3L	2,362,816 – 2,362,986	- - - - - - - -	8123	2,362,849 – 2,362,955	-	5	113	83.68	-2.72	0.95	0.996760
5906	dm3.chr3L	2,366,012 – 2,366,117	- - - - - - - -	8125	2,366,012 – 2,366,117	-	5	105	88.68	-2.33	0.78	0.923133
5909	dm3.chr3L	2,380,587 – 2,380,683	- - - intron="intron;ID=intron_FBgn0035338:1_FBgn0035338:4;Name=CG13800-in;Parent=FBtr0303461;parent_type=mRNA" - - - -	8128	2,380,587 – 2,380,683	+	8	111	61.97	-1.72	0.34	0.917322
5911	dm3.chr3L	2,408,252 – 2,408,347	- - CDS="CDS;ID=CDS_FBgn0035338:4_375;Name=CG13800-cds;Parent=FBtr0303462;parent_type=mRNA" - - - - -	8131	2,408,252 – 2,408,347	+	11	114	80.19	-2.11	0.69	0.975607
5913	dm3.chr3L	2,432,492 – 2,432,609	- - - intron="intron;ID=intron_FBgn0261551:4_FBgn0261551:6;Name=CG42669-in;Parent=FBtr0302678,FBtr0302679,FBtr0302682;parent_type=mRNA" - - - -	8134	2,432,492 – 2,432,609	+	7	120	63.42	-1.85	0.51	0.994716
5914	dm3.chr3L	2,446,392 – 2,446,494	- - - intron="intron;ID=intron_FBgn0261551:12_FBgn0261551:15;Name=CG42669-in;Parent=FBtr0302685,FBtr0302683,FBtr0302684,FBtr0302678,FBtr0302679,FBtr0302682,FBtr0302676,FBtr0302677;parent_type=mRNA" - - - -	8135	2,446,392 – 2,446,494	-	6	109	93.87	-2.43	0.85	0.943391
5915	dm3.chr3L	2,447,987 – 2,448,052	- - - intron="intron;ID=intron_FBgn0261551:12_FBgn0261551:15;Name=CG42669-in;Parent=FBtr0302685,FBtr0302683,FBtr0302684,FBtr0302678,FBtr0302679,FBtr0302682,FBtr0302676,FBtr0302677;parent_type=mRNA" - - - -	8137	2,447,987 – 2,448,052	-	4	65	52.56	-0.95	0.64	0.994847
5920	dm3.chr3L	2,472,865 – 2,472,961	- - - intron="intron;ID=intron_CG33232:28_CG33232:2;Name=CG33232-in;Parent=FBtr0100539;parent_type=mRNA" - - - -	8142	2,472,865 – 2,472,961	-	4	111	79.82	-1.97	0.72	0.917404
5925	dm3.chr3L	2,506,669 – 2,506,796	- - - - - - - -	8148	2,506,669 – 2,506,777	+	7	115	78.37	-2.58	0.75	0.996548
5925	dm3.chr3L	2,506,669 – 2,506,796	- - - - - - - -	8149	2,506,669 – 2,506,777	-	7	115	78.37	-2.43	0.62	0.987166
5926	dm3.chr3L	2,512,119 – 2,512,210	- - - intron="intron;ID=intron_FBgn0010905:12_FBgn0010905:10;Name=Spn-in;Parent=FBtr0304615;parent_type=mRNA" - - - -	8151	2,512,119 – 2,512,210	+	12	112	73.18	-1.24	0.76	0.970410
5930	dm3.chr3L	2,540,536 – 2,540,647	- - - - - - - -	8155	2,540,536 – 2,540,647	+	5	122	88.65	-2.38	0.83	0.961199
5935	dm3.chr3L	2,552,630 – 2,552,785	- - - intron="intron;ID=intron_FBgn0010905:22_FBgn0010905:21;Name=Spn-in;Parent=FBtr0304613,FBtr0304614,FBtr0304615,FBtr0304616,FBtr0304617,FBtr0304618,FBtr0304620,FBtr0304621;parent_type=mRNA" - - - -	8161	2,552,630 – 2,552,785	+	4	172	75.36	-3.50	0.45	0.993463
5936	dm3.chr3L	2,563,075 – 2,563,161	- - - intron="intron;ID=intron_CG16973:10_CG16973:11;Name=msn-in;Parent=FBtr0072956;parent_type=mRNA" - - - -	8162	2,563,075 – 2,563,161	-	5	91	82.11	-1.80	0.78	0.903955
5938	dm3.chr3L	2,576,544 – 2,576,635	- - - intron="intron;ID=intron_CG16973:3_CG16973:4;Name=msn-in;Parent=FBtr0072960,FBtr0072956,FBtr0072957,FBtr0072958,FBtr0072959;parent_type=mRNA" - - - -	8164	2,576,544 – 2,576,635	+	5	95	91.07	-2.43	0.95	0.989704
5940	dm3.chr3L	2,619,621 – 2,619,741	- - - intron="intron;ID=intron_CG12002:7_CG12002:3;Name=Pxn-in;Parent=FBtr0072952;parent_type=mRNA" - - - -	8166	2,619,621 – 2,619,741	+	4	120	79.58	-2.77	0.60	0.978173
5945	dm3.chr3L	2,700,194 – 2,700,344	- - - - - - - -	8173	2,700,224 – 2,700,344	+	5	120	70.75	-1.38	0.60	0.908913
5945	dm3.chr3L	2,700,194 – 2,700,344	- - - - - - - -	8174	2,700,224 – 2,700,344	-	5	120	70.75	-1.37	0.67	0.951680
5946	dm3.chr3L	2,707,779 – 2,707,839	- - - - - - - -	8175	2,707,779 – 2,707,839	-	3	60	97.78	-2.35	0.92	0.949366
5948	dm3.chr3L	2,720,960 – 2,721,061	- - CDS="CDS;ID=CDS_FBgn0052296:2_479;Name=Mrtf-cds;Parent=FBtr0072944,FBtr0290067;parent_type=mRNA" - - - - -	8177	2,720,960 – 2,721,061	+	10	117	64.79	-1.21	0.44	0.908133
5951	dm3.chr3L	2,729,387 – 2,729,487	- - - - - - - -	8181	2,729,387 – 2,729,487	-	13	119	74.44	-1.96	0.71	0.997022
5954	dm3.chr3L	2,756,549 – 2,756,770	- - - - - - - -	8184	2,756,549 – 2,756,641	+	6	101	71.08	-2.30	0.41	0.916935
5955	dm3.chr3L	2,785,838 – 2,785,978	- - - - - - - -	8187	2,785,838 – 2,785,940	+	6	103	65.42	-2.44	0.61	0.999610
				8188	2,785,838 – 2,785,940	-	6	103	65.42	-2.05	0.53	0.997718
				8189	2,785,866 – 2,785,978	+	5	114	82.22	-3.01	0.72	0.995314
5957	dm3.chr3L	2,794,528 – 2,794,627	- - CDS="CDS;ID=CDS_FBgn0035376:5_375;Name=CG2083-cds;Parent=FBtr0289987;parent_type=mRNA" - - - - -	8192	2,794,528 – 2,794,627	+	12	111	83.15	-1.77	0.75	0.932072
5957	dm3.chr3L	2,794,528 – 2,794,627		8193	2,794,528 – 2,794,627	-	12	111	83.15	-3.94	0.80	0.999454
5959	dm3.chr3L	2,803,248 – 2,803,343	- - - - - - - -	8195	2,803,248 – 2,803,343	+	6	104	80.09	-2.99	0.58	0.990063
5959	dm3.chr3L	2,803,248 – 2,803,343	- - - - - - - -	8196	2,803,248 – 2,803,343	-	6	104	80.09	-2.67	0.58	0.972771
5960	dm3.chr3L	2,805,863 – 2,805,993	- - - - - - - -	8197	2,805,863 – 2,805,958	+	9	117	82.41	-2.99	0.68	0.993092
				8198	2,805,863 – 2,805,958	-	9	117	82.41	-2.24	0.69	0.939889
				8199	2,805,882 – 2,805,993	+	7	120	82.86	-2.25	0.76	0.957619
5961	dm3.chr3L	2,807,683 – 2,807,778	- - - - - - - -	8200	2,807,683 – 2,807,778	+	3	95	92.83	-2.07	0.93	0.950158
5961	dm3.chr3L	2,807,683 – 2,807,778	- - - - - - - -	8201	2,807,683 – 2,807,778	-	3	95	92.83	-2.20	0.96	0.978547
5962	dm3.chr3L	2,810,843 – 2,810,899	- - - - - - - -	8202	2,810,843 – 2,810,899	+	4	64	61.94	-2.72	0.58	0.999352
5964	dm3.chr3L	2,817,667 – 2,817,759	- - - - - - - -	8205	2,817,667 – 2,817,759	+	10	101	76.74	-2.12	0.68	0.993113
5970	dm3.chr3L	2,849,815 – 2,849,877	- - - intron="intron;ID=intron_FBgn0035378:2_FBgn0035378:1;Name=CG9973-in;Parent=FBtr0113128;parent_type=mRNA" - - - -	8212	2,849,815 – 2,849,877	+	5	62	96.77	-1.93	1.01	0.977606
5971	dm3.chr3L	2,856,707 – 2,856,811	- - - intron="intron;ID=intron_FBgn0035378:3_FBgn0035378:2;Name=CG9973-in;Parent=FBtr0113128;parent_type=mRNA" - - - -	8214	2,856,707 – 2,856,811	-	12	116	85.67	-2.24	0.76	0.961899
5975	dm3.chr3L	2,870,710 – 2,870,875	- - CDS="CDS;ID=CDS_FBgn0035378:4_370;Name=CG9973-cds;Parent=FBtr0113128;parent_type=mRNA" - - - - -	8219	2,870,741 – 2,870,845	+	4	105	64.11	-1.60	0.54	0.971540
5975	dm3.chr3L	2,870,710 – 2,870,875		8220	2,870,741 – 2,870,845	-	4	105	64.11	-2.06	0.54	0.994040
5976	dm3.chr3L	2,870,980 – 2,871,074	- - CDS="CDS;ID=CDS_FBgn0035378:4_370;Name=CG9973-cds;Parent=FBtr0113128;parent_type=mRNA" - - - - -	8222	2,870,980 – 2,871,074	+	9	105	73.72	-2.10	0.47	0.956380
5979	dm3.chr3L	2,880,788 – 2,880,950	- - - - - - - -	8226	2,880,788 – 2,880,950	-	8	169	74.68	-1.79	0.51	0.944741
5980	dm3.chr3L	2,883,007 – 2,883,070	- - - - - - - -	8227	2,883,007 – 2,883,070	+	6	64	75.47	-1.59	0.66	0.949457
5986	dm3.chr3L	2,919,506 – 2,919,601	- - - intron="intron;ID=intron_FBgn0262593:3_FBgn0262593:4;Name=Shab-in;Parent=FBtr0305201,FBtr0305202,FBtr0305203,FBtr0305204,FBtr0305205,FBtr0305206,FBtr0305207,FBtr0305208,FBtr0305209;parent_type=mRNA" - - - -	8234	2,919,506 – 2,919,601	+	5	109	63.87	-1.64	0.48	0.969383
5992	dm3.chr3L	2,941,034 – 2,941,152	- - CDS="CDS;ID=CDS_FBgn0262593:6_470;Name=Shab-cds;Parent=FBtr0305202,FBtr0305207;parent_type=mRNA" - - - - -	8240	2,941,034 – 2,941,150	-	14	116	73.01	-1.84	0.53	0.992074
5992	dm3.chr3L	2,941,034 – 2,941,152		8241	2,941,036 – 2,941,152	-	14	116	73.06	-2.19	0.59	0.998527
5995	dm3.chr3L	2,948,662 – 2,948,868	- - CDS="CDS;ID=CDS_FBgn0262593:11_470;Name=Shab-cds;Parent=FBtr0305202;parent_type=mRNA" - - - - -	8246	2,948,688 – 2,948,794	+	9	121	67.81	-0.93	0.58	0.910635
5996	dm3.chr3L	2,958,548 – 2,958,645	- - - - - - - -	8250	2,958,548 – 2,958,645	+	6	98	63.13	-1.68	0.39	0.967334
5996	dm3.chr3L	2,958,548 – 2,958,645	- - - - - - - -	8251	2,958,548 – 2,958,645	-	6	98	63.13	-1.71	0.35	0.932804
5997	dm3.chr3L	2,965,825 – 2,965,922	- - - - - - - -	8252	2,965,825 – 2,965,922	+	8	108	68.82	-1.25	0.54	0.901205
6000	dm3.chr3L	2,979,366 – 2,979,456	- - - - - - - -	8255	2,979,366 – 2,979,456	+	6	91	85.50	-2.32	0.73	0.952859
6002	dm3.chr3L	2,991,619 – 2,991,743	- - - - - - - -	8259	2,991,619 – 2,991,712	-	5	93	93.05	-2.23	0.86	0.922367
				8260	2,991,650 – 2,991,743	+	7	101	64.83	-1.62	0.47	0.977301
				8261	2,991,650 – 2,991,743	-	7	101	64.83	-1.54	0.60	0.994817
6003	dm3.chr3L	3,005,507 – 3,005,635	- - - intron="intron;ID=intron_CG2114:1_CG2114:2;Name=FR-in;Parent=FBtr0072980;parent_type=mRNA" - - - -	8262	3,005,507 – 3,005,612	+	7	117	67.62	-2.11	0.54	0.996984
6003	dm3.chr3L	3,005,507 – 3,005,635		8263	3,005,536 – 3,005,635	+	6	99	79.39	-1.60	0.70	0.903665
6005	dm3.chr3L	3,014,525 – 3,014,641	- - - - - - - -	8265	3,014,525 – 3,014,625	-	5	100	79.64	-2.76	0.73	0.995843
6007	dm3.chr3L	3,060,561 – 3,060,709	- - - intron="intron;ID=intron_CG32486:1_CG32486:2;Name=CG32486-in;Parent=FBtr0073004;parent_type=mRNA" - - - -	8268	3,060,561 – 3,060,709	+	5	148	97.57	-3.13	0.97	0.995904
6008	dm3.chr3L	3,070,301 – 3,070,397	- - CDS="CDS;ID=CDS_CG32486:1_305;Name=CG32486-cds;Parent=FBtr0073004;parent_type=mRNA" - - - - -	8270	3,070,301 – 3,070,397	+	11	102	65.71	-1.18	0.54	0.967518
6010	dm3.chr3L	3,076,842 – 3,076,936	- - - intron="intron;ID=intron_FBgn0035397:8_FBgn0035397:11;Name=CG11486-in;Parent=FBtr0072991;parent_type=mRNA" - - - -	8272	3,076,842 – 3,076,936	-	6	105	69.26	-1.38	0.53	0.902789
6012	dm3.chr3L	3,081,751 – 3,081,846	- - - intron="intron;ID=intron_FBgn0035397:12_FBgn0035397:14;Name=CG11486-in;Parent=FBtr0072995;parent_type=mRNA" - - - -	8274	3,081,751 – 3,081,846	-	11	118	63.52	-2.23	0.27	0.930770
6014	dm3.chr3L	3,083,426 – 3,083,521	- - - intron="intron;ID=intron_FBgn0035397:13_FBgn0035397:14;Name=CG11486-in;Parent=FBtr0072996;parent_type=mRNA" - - - -	8276	3,083,426 – 3,083,521	-	7	107	74.36	-2.58	0.40	0.942838
6015	dm3.chr3L	3,083,837 – 3,083,902	- - - intron="intron;ID=intron_FBgn0035397:14_FBgn0035397:15;Name=CG11486-in;Parent=FBtr0072998,FBtr0073000,FBtr0073001,FBtr0073002,FBtr0073003,FBtr0072991,FBtr0072992,FBtr0072994,FBtr0113131;parent_type=mRNA" - - - -	8277	3,083,837 – 3,083,902	-	7	71	56.19	-1.59	0.50	0.998804
6016	dm3.chr3L	3,085,519 – 3,085,617	- - CDS="CDS;ID=CDS_FBgn0035397:16_370;Name=CG11486-cds;Parent=FBtr0113129,FBtr0113130,FBtr0113131;parent_type=mRNA" - - - - -	8279	3,085,519 – 3,085,617	-	5	98	98.57	-3.02	1.00	0.996308
6017	dm3.chr3L	3,087,031 – 3,087,122	- - - intron="intron;ID=intron_FBgn0035397:19_FBgn0035397:20;Name=CG11486-in;Parent=FBtr0072995,FBtr0072996,FBtr0072998,FBtr0072999,FBtr0073000,FBtr0073001,FBtr0073002,FBtr0073003,FBtr0072991,FBtr0072992,FBtr0072993,FBtr0072994,FBtr0113129,FBtr0113130,FBtr0113131;parent_type=mRNA" - - - -	8280	3,087,031 – 3,087,122	-	11	92	65.93	-0.94	0.46	0.913805
6018	dm3.chr3L	3,095,717 – 3,095,869	FBnoncoding="tRNA;ID=FBtr0073018;Name=tRNA:CR32288-RA;Parent=FBgn0052288;Alias=CR32288-RA;Dbxref=FlyBase_Annotation_IDs:CR32288-RA;score_text=Weakly" tRNAscann="Cys_chr3L_trna14" - intron="intron;ID=intron_FBgn0035398:7_FBgn0035398:6;Name=Cht7-in;Parent=FBtr0073124;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010216966.1/262-333\|2.7e-27" - - -	8281	3,095,717 – 3,095,869	+	11	156	74.11	-1.28	0.69	0.975786
6018	dm3.chr3L	3,095,717 – 3,095,869		8282	3,095,717 – 3,095,869	-	11	156	74.11	-1.32	0.68	0.977201
6019	dm3.chr3L	3,095,985 – 3,096,062	FBnoncoding="tRNA;ID=FBtr0073019;Name=tRNA:CR32289-RA;Parent=FBgn0052289;Alias=CR32289-RA;Dbxref=FlyBase_Annotation_IDs:CR32289-RA;score_text=Weakly" tRNAscann="Cys_chr3L_trna15" - intron="intron;ID=intron_FBgn0035398:7_FBgn0035398:6;Name=Cht7-in;Parent=FBtr0073124;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010216966.1/262-333\|1.2e-27" - - -	8283	3,095,985 – 3,096,062	+	13	78	93.82	-1.83	1.02	0.984828
6019	dm3.chr3L	3,095,985 – 3,096,062		8284	3,095,985 – 3,096,062	-	13	78	93.82	-2.19	1.01	0.992154
6020	dm3.chr3L	3,097,508 – 3,097,598	FBnoncoding="tRNA;ID=FBtr0073022;Name=tRNA:CR32286-RA;Parent=FBgn0052286;Alias=CR32286-RA;Dbxref=FlyBase_Annotation_IDs:CR32286-RA;score_text=Weakly" tRNAscann="Cys_chr3L_trna18" - intron="intron;ID=intron_FBgn0035398:7_FBgn0035398:6;Name=Cht7-in;Parent=FBtr0073124;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010216966.1/262-333\|1.5e-27" - - -	8285	3,097,508 – 3,097,598	+	11	101	83.95	-2.19	0.97	0.993441
6020	dm3.chr3L	3,097,508 – 3,097,598		8286	3,097,508 – 3,097,598	-	11	101	83.95	-2.49	0.98	0.996230
6023	dm3.chr3L	3,122,693 – 3,122,783	- - - intron="intron;ID=intron_FBgn0026189:16_FBgn0026189:14;Name=prominin-like-in;Parent=FBtr0073120;parent_type=mRNA" - - - -	8289	3,122,693 – 3,122,783	-	6	95	71.54	-2.04	0.47	0.959528
6024	dm3.chr3L	3,134,237 – 3,134,357	- - - intron="intron;ID=intron_FBgn0035400:17_FBgn0035400:14;Name=CG11537-in;Parent=FBtr0073116;parent_type=mRNA" - - - -	8290	3,134,237 – 3,134,357	+	6	121	73.17	-1.46	0.65	0.953866
6032	dm3.chr3L	3,166,907 – 3,167,244	- - - - - - - -	8300	3,166,907 – 3,167,002	-	6	103	83.10	-2.22	0.74	0.966053
				8303	3,167,067 – 3,167,182	+	6	118	76.49	-1.81	0.58	0.908526
				8304	3,167,104 – 3,167,209	+	6	105	75.16	-2.15	0.60	0.985682
				8305	3,167,104 – 3,167,209	-	6	105	75.16	-1.78	0.59	0.943871
				8306	3,167,142 – 3,167,244	+	5	103	95.87	-1.87	0.96	0.938947
6033	dm3.chr3L	3,176,857 – 3,176,947	- - - intron="intron;ID=intron_CG14964:2_CG14964:3;Name=CG14964-in;Parent=FBtr0073110;parent_type=mRNA" - - - -	8308	3,176,857 – 3,176,947	-	8	97	66.93	-0.62	0.65	0.910054
6037	dm3.chr3L	3,251,024 – 3,251,104	FBnoncoding="pre_miRNA;ID=FBtr0304174;Name=mir-282-RM;Parent=FBgn0262368;Alias=CR42880-RM;Dbxref=FlyBase_Annotation_IDs:CR42880-RM,miRBase:MI0000367" - - - "Rfam_10.0=RF00724;mir-282;AE014296.4/3251022-3251116\|5.8e-39" - - "mirBase_v16=dme-mir-282\|1.1e-40"	8313	3,251,024 – 3,251,104	+	13	82	88.54	-6.36	0.94	0.995982
6037	dm3.chr3L	3,251,024 – 3,251,104		8314	3,251,024 – 3,251,104	-	13	82	88.54	-4.58	0.91	0.999242
6038	dm3.chr3L	3,252,167 – 3,252,282	- - - - - - - -	8315	3,252,167 – 3,252,278	+	5	116	78.13	-1.73	0.70	0.909141
6042	dm3.chr3L	3,266,853 – 3,266,955	- - - intron="intron;ID=intron_FBgn0035427:2_FBgn0035427:3;Name=ckd-in;Parent=FBtr0073050;parent_type=mRNA" - - - -	8320	3,266,853 – 3,266,955	+	7	104	73.76	-2.01	0.57	0.977265
6047	dm3.chr3L	3,303,964 – 3,304,021	- - - intron="intron;ID=intron_CG17723:1_CG17723:8;Name=ZnT63C-in;Parent=FBtr0073055;parent_type=mRNA" - - - -	8327	3,303,964 – 3,304,021	-	7	57	79.62	-2.05	0.60	0.945409
6050	dm3.chr3L	3,317,630 – 3,317,739	- - - - - - - -	8330	3,317,630 – 3,317,739	-	4	113	92.64	-2.15	0.92	0.958919
6052	dm3.chr3L	3,327,709 – 3,327,824	- - - intron="intron;ID=intron_FBgn0035438:3_FBgn0035438:4;Name=PHGPx-in;Parent=FBtr0073068;parent_type=mRNA" - - - -	8332	3,327,709 – 3,327,824	+	3	115	94.78	-3.38	0.90	0.995083
6052	dm3.chr3L	3,327,709 – 3,327,824		8333	3,327,709 – 3,327,824	-	3	115	94.78	-2.71	0.95	0.990618
6053	dm3.chr3L	3,329,904 – 3,329,999	- - - - - - - -	8334	3,329,904 – 3,329,999	+	6	96	82.71	-2.41	0.65	0.957718
6056	dm3.chr3L	3,370,949 – 3,371,017	- - - - - - - -	8337	3,370,949 – 3,371,017	+	7	76	69.18	-1.52	0.54	0.924049
6058	dm3.chr3L	3,380,350 – 3,380,442	- - - - - - - -	8340	3,380,350 – 3,380,442	+	8	98	73.85	-3.08	0.48	0.998029
6058	dm3.chr3L	3,380,350 – 3,380,442	- - - - - - - -	8341	3,380,350 – 3,380,442	-	8	98	73.85	-2.12	0.43	0.906873
6061	dm3.chr3L	3,399,781 – 3,399,928	- - - - - - - -	8344	3,399,781 – 3,399,879	+	6	105	74.08	-1.54	0.66	0.907489
6062	dm3.chr3L	3,404,373 – 3,404,470	- - CDS="CDS;ID=CDS_CG1921:4_307;Name=sty-cds;Parent=FBtr0073146;parent_type=mRNA" - - - - -	8347	3,404,373 – 3,404,470	+	9	113	68.41	-1.72	0.44	0.938912
6065	dm3.chr3L	3,421,432 – 3,421,527	- - - - - - - -	8350	3,421,432 – 3,421,527	+	6	95	87.23	-2.85	0.73	0.984557
6072	dm3.chr3L	3,452,746 – 3,452,854	- - - intron="intron;ID=intron_CG10840:4_CG10840:5;Name=eIF5B-in;Parent=FBtr0073144;parent_type=mRNA" - - - -	8359	3,452,746 – 3,452,854	+	5	117	65.42	-2.63	0.29	0.946029
6073	dm3.chr3L	3,463,912 – 3,464,009	- - - intron="intron;ID=intron_CG11513:6_CG11513:7;Name=armi-in;Parent=FBtr0073126,FBtr0100641;parent_type=mRNA" - - - -	8361	3,463,912 – 3,464,009	+	5	105	64.82	-0.70	0.66	0.936471
6076	dm3.chr3L	3,472,999 – 3,473,093	- - - - - - - -	8365	3,472,999 – 3,473,093	-	5	104	71.30	-1.44	0.59	0.902888
6078	dm3.chr3L	3,480,166 – 3,480,228	- - - - - - - -	8367	3,480,166 – 3,480,228	-	5	62	92.42	-1.82	0.93	0.930301
6084	dm3.chr3L	3,522,822 – 3,522,892	- - - intron="intron;ID=intron_FBgn0005640:3_FBgn0005640:11;Name=Eip63E-in;Parent=FBtr0073132,FBtr0302598;parent_type=mRNA" - - - -	8373	3,522,822 – 3,522,892	+	7	72	93.37	-2.10	0.94	0.969157
6085	dm3.chr3L	3,529,240 – 3,529,318	- - - intron="intron;ID=intron_FBgn0005640:3_FBgn0005640:11;Name=Eip63E-in;Parent=FBtr0073132,FBtr0302598;parent_type=mRNA" - - - -	8374	3,529,240 – 3,529,318	+	5	78	97.18	-1.65	0.99	0.932877
6085	dm3.chr3L	3,529,240 – 3,529,318		8375	3,529,240 – 3,529,318	-	5	78	97.18	-2.38	0.99	0.988275
6087	dm3.chr3L	3,532,320 – 3,532,370	- - - intron="intron;ID=intron_FBgn0005640:3_FBgn0005640:11;Name=Eip63E-in;Parent=FBtr0073132,FBtr0302598;parent_type=mRNA" - - - -	8377	3,532,320 – 3,532,370	-	3	58	59.64	-1.83	0.55	0.972145
6088	dm3.chr3L	3,538,170 – 3,538,234	- - - intron="intron;ID=intron_FBgn0005640:3_FBgn0005640:11;Name=Eip63E-in;Parent=FBtr0073132,FBtr0302598;parent_type=mRNA" - - - -	8378	3,538,170 – 3,538,234	+	5	64	90.58	-2.72	0.76	0.950420
6089	dm3.chr3L	3,539,165 – 3,539,233	- - - intron="intron;ID=intron_FBgn0005640:3_FBgn0005640:11;Name=Eip63E-in;Parent=FBtr0073132,FBtr0302598;parent_type=mRNA" - - - -	8379	3,539,165 – 3,539,233	-	7	78	67.36	-1.32	0.54	0.947043
6091	dm3.chr3L	3,554,154 – 3,554,259	- - - intron="intron;ID=intron_FBgn0005640:11_FBgn0005640:12;Name=Eip63E-in;Parent=FBtr0110920,FBtr0110921,FBtr0110922,FBtr0110923,FBtr0110924,FBtr0110925,FBtr0073131,FBtr0073132,FBtr0073133,FBtr0073134,FBtr0073135,FBtr0302598,FBtr0301948;parent_type=mRNA" - - - -	8381	3,554,154 – 3,554,250	-	7	98	68.62	-2.20	0.36	0.961034
6091	dm3.chr3L	3,554,154 – 3,554,259		8382	3,554,165 – 3,554,259	-	6	96	75.35	-2.20	0.51	0.958893
6095	dm3.chr3L	3,664,780 – 3,664,847	- - - - - - - -	8387	3,664,780 – 3,664,847	+	6	74	69.90	-1.99	0.43	0.932298
6099	dm3.chr3L	3,678,963 – 3,679,078	- - - - - - - -	8391	3,678,963 – 3,679,054	+	11	122	86.91	-2.45	0.74	0.947597
6099	dm3.chr3L	3,678,963 – 3,679,078	- - - - - - - -	8392	3,678,979 – 3,679,078	+	12	120	90.21	-2.10	0.88	0.952778
6104	dm3.chr3L	3,718,520 – 3,718,631	- - - intron="intron;ID=intron_FBgn0052264:3_FBgn0052264:2;Name=CG32264-in;Parent=FBtr0073187,FBtr0073188,FBtr0073186,FBtr0113430,FBtr0303097,FBtr0303098;parent_type=mRNA" - - - -	8397	3,718,520 – 3,718,631	+	5	123	64.81	-3.42	0.28	0.994587
6104	dm3.chr3L	3,718,520 – 3,718,631		8398	3,718,520 – 3,718,631	-	5	123	64.81	-3.96	0.25	0.997701
6106	dm3.chr3L	3,725,048 – 3,725,098	- - - intron="intron;ID=intron_FBgn0052264:8_FBgn0052264:7;Name=CG32264-in;Parent=FBtr0073188;parent_type=mRNA" - - - -	8400	3,725,048 – 3,725,098	+	8	60	76.69	-1.78	0.80	0.979414
6107	dm3.chr3L	3,733,520 – 3,733,613	- - - intron="intron;ID=intron_FBgn0052264:8_FBgn0052264:7;Name=CG32264-in;Parent=FBtr0073188;parent_type=mRNA" - - - -	8401	3,733,520 – 3,733,613	+	7	117	66.48	-2.15	0.42	0.977314
6112	dm3.chr3L	3,787,983 – 3,788,105	- - - - - - - -	8406	3,787,983 – 3,788,090	+	6	115	75.33	-1.61	0.62	0.907881
6112	dm3.chr3L	3,787,983 – 3,788,105	- - - - - - - -	8407	3,787,992 – 3,788,105	+	5	113	86.98	-2.88	0.72	0.977830
6113	dm3.chr3L	3,798,000 – 3,798,065	- - - - - - - -	8409	3,798,000 – 3,798,065	+	11	70	70.18	-1.94	0.41	0.949554
6113	dm3.chr3L	3,798,000 – 3,798,065	- - - - - - - -	8410	3,798,000 – 3,798,065	-	11	70	70.18	-2.23	0.33	0.911356
6114	dm3.chr3L	3,800,685 – 3,800,834	- - - - - - - -	8411	3,800,685 – 3,800,834	+	3	169	70.32	-2.43	0.48	0.927917
6120	dm3.chr3L	3,852,361 – 3,852,415	- - - intron="intron;ID=intron_CG1072:7_CG1072:2;Name=Awh-in;Parent=FBtr0073156;parent_type=mRNA" - - - -	8418	3,852,361 – 3,852,415	-	7	60	75.34	-1.64	0.67	0.959203
6124	dm3.chr3L	3,883,319 – 3,883,419	- - - - - - - -	8422	3,883,319 – 3,883,419	+	4	117	80.26	-2.20	0.70	0.946403
6124	dm3.chr3L	3,883,319 – 3,883,419	- - - - - - - -	8423	3,883,319 – 3,883,419	-	4	117	80.26	-2.62	0.59	0.953031
6127	dm3.chr3L	3,890,840 – 3,890,946	- - - - - - - -	8426	3,890,840 – 3,890,935	-	10	110	75.90	-1.24	0.66	0.908775
6127	dm3.chr3L	3,890,840 – 3,890,946	- - - - - - - -	8427	3,890,851 – 3,890,946	-	10	110	77.15	-2.59	0.66	0.997279
6128	dm3.chr3L	3,893,191 – 3,893,360	FBnoncoding="snRNA;ID=FBtr0111039;Name=snRNA:U11-RA;Parent=FBgn0083987;Alias=FBtr0091696,CR33708-RA;Dbxref=FlyBase_Annotation_IDs:CR34151-RA,REFSEQ:NR_003121;score_text=Weakly" - - intron="intron;ID=intron_FBgn0026592:1_FBgn0026592:2;Name=Fie-in;Parent=FBtr0073157;parent_type=mRNA" "Rfam_10.0=RF00548;U11;AE014296.4/3893058-3893330\|8.6e-74" - - -	8429	3,893,220 – 3,893,323	-	9	111	66.05	-1.28	0.49	0.938649
6128	dm3.chr3L	3,893,191 – 3,893,360		8430	3,893,252 – 3,893,360	-	12	114	58.52	-0.77	0.58	0.992366
6130	dm3.chr3L	3,927,693 – 3,927,793	- - - - - - - -	8432	3,927,693 – 3,927,793	+	6	108	66.93	-1.35	0.63	0.979659
6132	dm3.chr3L	3,960,901 – 3,960,999	- - - - - - - -	8434	3,960,901 – 3,960,999	-	7	112	83.80	-1.62	0.90	0.946434
6133	dm3.chr3L	3,964,122 – 3,964,217	- - - - - - - -	8435	3,964,122 – 3,964,217	+	9	107	68.55	-1.21	0.58	0.969159
6134	dm3.chr3L	3,964,673 – 3,964,766	- - - - - - - -	8436	3,964,673 – 3,964,766	+	10	101	69.93	-1.79	0.40	0.938865
6137	dm3.chr3L	3,988,054 – 3,988,167	- - - - - - - -	8441	3,988,054 – 3,988,167	-	5	116	79.77	-3.28	0.58	0.996135
6138	dm3.chr3L	3,997,382 – 3,997,512	- - - - - - - -	8443	3,997,418 – 3,997,512	-	11	108	77.81	-2.50	0.69	0.996325
6139	dm3.chr3L	3,998,237 – 3,998,329	- - - - - - - -	8444	3,998,237 – 3,998,329	+	7	100	80.69	-2.70	0.64	0.983187
6141	dm3.chr3L	4,014,628 – 4,014,744	- - - - - - - -	8449	4,014,651 – 4,014,744	+	11	99	90.56	-2.29	0.87	0.969270
6144	dm3.chr3L	4,032,060 – 4,032,152	- - CDS="CDS;ID=CDS_FBgn0035486:1_327;Name=Gr64d-cds;Parent=FBtr0073198;parent_type=mRNA" - - - - -	8453	4,032,060 – 4,032,152	+	9	109	67.18	-2.23	0.43	0.992093
6144	dm3.chr3L	4,032,060 – 4,032,152		8454	4,032,060 – 4,032,152	-	9	109	67.18	-2.04	0.41	0.977668
6147	dm3.chr3L	4,089,510 – 4,089,605	- - - intron="intron;ID=intron_CG14989:1_CG14989:2;Name=CG14989-in;Parent=FBtr0073207;parent_type=mRNA" - - - -	8457	4,089,510 – 4,089,605	-	4	98	84.71	-2.72	0.77	0.983518
6159	dm3.chr3L	4,192,006 – 4,192,123	- - - intron="intron;ID=intron_CG1232:2_CG1232:3;Name=tipE-in;Parent=FBtr0073219,FBtr0073220;parent_type=mRNA" - - - -	8469	4,192,006 – 4,192,123	+	6	120	72.57	-2.48	0.45	0.982772
6160	dm3.chr3L	4,213,560 – 4,213,738	- - - - - - - -	8472	4,213,560 – 4,213,738	-	3	178	83.27	-2.45	0.80	0.967218
6163	dm3.chr3L	4,233,178 – 4,233,288	- - - - - - - -	8475	4,233,178 – 4,233,288	-	6	112	70.97	-1.45	0.57	0.943576
6166	dm3.chr3L	4,264,596 – 4,264,761	- - - intron="intron;ID=intron_CG1273:1_CG1273:2;Name=CG1273-in;Parent=FBtr0073231;parent_type=mRNA" - - - -	8478	4,264,596 – 4,264,761	+	6	167	76.42	-1.75	0.58	0.905457
6167	dm3.chr3L	4,264,915 – 4,265,052	- - - intron="intron;ID=intron_CG1273:1_CG1273:2;Name=CG1273-in;Parent=FBtr0073231;parent_type=mRNA" - - - -	8480	4,264,937 – 4,265,052	+	3	115	74.77	-2.34	0.77	0.983093
6170	dm3.chr3L	4,322,229 – 4,322,315	- - - - - - - -	8483	4,322,229 – 4,322,315	+	6	94	68.01	-1.50	0.53	0.955921
6174	dm3.chr3L	4,347,170 – 4,347,265	- - - intron="intron;ID=intron_FBgn0035533:13_FBgn0035533:12;Name=Cip4-in;Parent=FBtr0073339,FBtr0113138,FBtr0306094,FBtr0306095,FBtr0306096;parent_type=mRNA" - - - -	8488	4,347,170 – 4,347,265	+	7	102	69.98	-1.75	0.54	0.985041
6176	dm3.chr3L	4,383,205 – 4,383,265	- - - - - - - -	8490	4,383,205 – 4,383,265	-	3	60	84.97	-2.65	0.83	0.983000
6177	dm3.chr3L	4,385,784 – 4,385,835	- - - intron="intron;ID=intron_CG7447:1_CG7447:2;Name=slow-in;Parent=FBtr0073291;parent_type=mRNA" - - - -	8491	4,385,784 – 4,385,835	+	8	54	78.63	-3.01	0.85	0.998612
6177	dm3.chr3L	4,385,784 – 4,385,835		8492	4,385,784 – 4,385,835	-	8	54	78.63	-2.71	0.74	0.997134
6178	dm3.chr3L	4,389,539 – 4,389,632	- - - intron="intron;ID=intron_CG7447:1_CG7447:2;Name=slow-in;Parent=FBtr0073291;parent_type=mRNA" - - - -	8493	4,389,539 – 4,389,632	-	5	93	86.29	-1.88	0.84	0.910584
6180	dm3.chr3L	4,408,124 – 4,408,180	- - - intron="intron;ID=intron_FBgn0035542:2_FBgn0035542:5;Name=CG11347-in;Parent=FBtr0073294;parent_type=mRNA" - - - -	8495	4,408,124 – 4,408,180	+	8	64	73.79	-2.86	0.70	0.999183
6184	dm3.chr3L	4,439,005 – 4,439,099	- - - - - - - -	8499	4,439,005 – 4,439,099	+	4	94	99.47	-1.85	1.00	0.954201
6184	dm3.chr3L	4,439,005 – 4,439,099	- - - - - - - -	8500	4,439,005 – 4,439,099	-	4	94	99.47	-3.62	1.00	0.998017
6185	dm3.chr3L	4,442,258 – 4,442,363	- - - - - - - -	8502	4,442,258 – 4,442,363	-	6	108	78.55	-3.04	0.58	0.996551
6187	dm3.chr3L	4,480,384 – 4,480,487	- - CDS="CDS;ID=CDS_CG7465:2_320;Name=CG7465-cds;Parent=FBtr0073306;parent_type=mRNA" - - - - -	8504	4,480,384 – 4,480,487	+	12	112	75.14	-1.64	0.73	0.991374
6195	dm3.chr3L	4,548,324 – 4,548,423	- - - intron="intron;ID=intron_FBgn0035558:4_FBgn0035558:6;Name=CG11357-in;Parent=FBtr0073310;parent_type=mRNA" - - - -	8513	4,548,324 – 4,548,423	+	6	102	75.39	-1.77	0.68	0.971349
6196	dm3.chr3L	4,549,953 – 4,550,004	- - - intron="intron;ID=intron_FBgn0035558:4_FBgn0035558:6;Name=CG11357-in;Parent=FBtr0073310;parent_type=mRNA" - - - -	8514	4,549,953 – 4,550,004	+	4	51	91.75	-1.20	1.06	0.960527
6198	dm3.chr3L	4,567,545 – 4,567,613	- - - intron="intron;ID=intron_FBgn0260657:4_FBgn0260657:5;Name=CG42540-in;Parent=FBtr0301098;parent_type=mRNA" - - - -	8517	4,567,545 – 4,567,613	-	5	68	95.29	-1.82	0.97	0.946795
6200	dm3.chr3L	4,572,310 – 4,572,363	- - - intron="intron;ID=intron_FBgn0260657:5_FBgn0260657:7;Name=CG42540-in;Parent=FBtr0301098;parent_type=mRNA" - - - -	8519	4,572,310 – 4,572,363	-	8	60	73.38	-1.42	0.61	0.945179
6201	dm3.chr3L	4,580,170 – 4,580,274	- - - intron="intron;ID=intron_FBgn0260657:10_FBgn0260657:11;Name=CG42540-in;Parent=FBtr0301095,FBtr0301096,FBtr0301097,FBtr0301098,FBtr0304988;parent_type=mRNA" - - - -	8520	4,580,170 – 4,580,274	-	6	107	72.62	-1.63	0.63	0.973134
6203	dm3.chr3L	4,580,563 – 4,580,656	- - - intron="intron;ID=intron_FBgn0260657:10_FBgn0260657:11;Name=CG42540-in;Parent=FBtr0301095,FBtr0301096,FBtr0301097,FBtr0301098,FBtr0304988;parent_type=mRNA" - - - -	8522	4,580,563 – 4,580,656	+	6	104	88.51	-4.61	0.91	0.999197
6203	dm3.chr3L	4,580,563 – 4,580,656		8523	4,580,563 – 4,580,656	-	6	104	88.51	-2.30	0.83	0.959752
6205	dm3.chr3L	4,590,450 – 4,590,518	- - - - - - - -	8525	4,590,450 – 4,590,518	-	6	68	71.29	-2.51	0.66	0.998894
6206	dm3.chr3L	4,590,588 – 4,590,671	- - - - - - - -	8526	4,590,588 – 4,590,671	+	8	89	53.52	-1.92	0.22	0.905619
6209	dm3.chr3L	4,614,630 – 4,614,798	- - - - - - - -	8530	4,614,630 – 4,614,736	+	5	117	79.86	-2.67	0.54	0.947679
				8531	4,614,630 – 4,614,736	-	5	117	79.86	-3.52	0.54	0.996173
				8532	4,614,667 – 4,614,762	+	6	118	66.43	-2.80	0.49	0.998497
				8533	4,614,667 – 4,614,762	-	6	118	66.43	-3.00	0.40	0.996759
6211	dm3.chr3L	4,615,647 – 4,615,768	- - - - - - - -	8536	4,615,647 – 4,615,768	-	5	132	91.31	-3.12	0.75	0.978595
6212	dm3.chr3L	4,616,387 – 4,616,491	- - - - - - - -	8537	4,616,387 – 4,616,491	-	5	104	91.85	-2.33	0.82	0.915974
6216	dm3.chr3L	4,626,132 – 4,626,251	- - - - - - - -	8541	4,626,132 – 4,626,251	+	5	120	87.18	-2.31	0.84	0.968420
6217	dm3.chr3L	4,629,069 – 4,629,192	- - - - - - - -	8543	4,629,069 – 4,629,183	-	13	120	80.07	-1.87	0.59	0.946986
6222	dm3.chr3L	4,677,987 – 4,678,107	- - CDS="CDS;ID=CDS_FBgn0085295:1_363;Name=CG34266-cds;Parent=FBtr0112461;parent_type=mRNA" intron="intron;ID=intron_FBgn0262870:24_FBgn0262870:23;Name=axo-in;Parent=FBtr0302646,FBtr0306206,FBtr0306207,FBtr0306208;parent_type=mRNA" - - - -	8550	4,677,987 – 4,678,107	-	10	120	70.23	-2.04	0.39	0.969807
6225	dm3.chr3L	4,727,188 – 4,727,241	- - - intron="intron;ID=intron_FBgn0035574:2_FBgn0035574:3;Name=Gef64C-in;Parent=FBtr0073345;parent_type=mRNA" - - - -	8555	4,727,188 – 4,727,241	-	8	53	95.82	-1.85	1.05	0.989166
6227	dm3.chr3L	4,747,533 – 4,747,647	- - - intron="intron;ID=intron_FBgn0035574:3_FBgn0035574:4;Name=Gef64C-in;Parent=FBtr0073345;parent_type=mRNA" - - - -	8557	4,747,533 – 4,747,647	+	3	120	73.80	-3.63	0.58	0.998477
6234	dm3.chr3L	4,797,267 – 4,797,365	- - - - - - - -	8565	4,797,267 – 4,797,365	-	12	107	83.63	-2.89	0.63	0.993057
6237	dm3.chr3L	4,878,266 – 4,878,376	- - - intron="intron;ID=intron_FBgn0035581:27_FBgn0035581:28;Name=CG17150-in;Parent=FBtr0289982;parent_type=mRNA" - - - -	8568	4,878,266 – 4,878,376	+	5	116	66.11	-2.39	0.35	0.962049
6239	dm3.chr3L	4,895,942 – 4,895,997	- - - - - - - -	8572	4,895,942 – 4,895,997	-	5	60	69.65	-1.15	0.67	0.918194
6243	dm3.chr3L	4,947,279 – 4,947,418	- - - intron="intron;ID=intron_FBgn0005775:2_FBgn0005775:1;Name=Con-in;Parent=FBtr0073375;parent_type=mRNA" - - - -	8577	4,947,279 – 4,947,392	-	7	117	71.04	-2.80	0.43	0.994261
6246	dm3.chr3L	4,958,817 – 4,958,964	- - - intron="intron;ID=intron_FBgn0005775:4_FBgn0005775:3;Name=Con-in;Parent=FBtr0073375;parent_type=mRNA" - - - -	8581	4,958,817 – 4,958,915	+	10	120	84.74	-2.56	0.78	0.984760
				8583	4,958,839 – 4,958,951	+	10	117	79.74	-2.12	0.74	0.987350
				8584	4,958,839 – 4,958,951	-	10	117	79.74	-2.10	0.55	0.912692
				8585	4,958,853 – 4,958,964	+	9	114	77.91	-1.73	0.76	0.980447
6249	dm3.chr3L	4,977,581 – 4,977,640	- - - - - - - -	8590	4,977,581 – 4,977,640	-	9	59	94.87	-2.44	0.81	0.906011
6250	dm3.chr3L	4,986,153 – 4,986,278	- - - - - - - -	8591	4,986,153 – 4,986,257	+	3	104	91.32	-3.20	0.79	0.985073
6253	dm3.chr3L	5,008,887 – 5,008,980	- - - - - - - -	8595	5,008,887 – 5,008,980	+	10	97	91.23	-4.10	0.81	0.998715
6253	dm3.chr3L	5,008,887 – 5,008,980	- - - - - - - -	8596	5,008,887 – 5,008,980	-	10	97	91.23	-3.41	0.78	0.995192
6255	dm3.chr3L	5,017,963 – 5,018,055	- - - - - - - -	8599	5,017,963 – 5,018,055	+	9	113	83.95	-2.40	0.73	0.970655
6258	dm3.chr3L	5,066,121 – 5,066,174	- - - - - - - -	8603	5,066,121 – 5,066,174	+	7	58	75.84	-2.49	0.47	0.971580
6259	dm3.chr3L	5,072,693 – 5,072,754	- - - - - - - -	8604	5,072,693 – 5,072,754	+	8	64	75.72	-2.10	0.53	0.978244
6260	dm3.chr3L	5,076,414 – 5,076,511	- - - - - - - -	8605	5,076,414 – 5,076,511	-	6	113	76.81	-2.25	0.60	0.967648
6268	dm3.chr3L	5,149,131 – 5,149,202	- - - - - - - -	8616	5,149,131 – 5,149,202	-	6	72	76.09	-1.97	0.53	0.915708
6269	dm3.chr3L	5,154,832 – 5,154,927	- - - - - - - -	8617	5,154,832 – 5,154,927	-	10	110	72.34	-1.15	0.62	0.911439
6272	dm3.chr3L	5,182,517 – 5,182,624	- - - - - - - -	8621	5,182,517 – 5,182,624	+	5	107	95.70	-2.35	0.95	0.979795
6276	dm3.chr3L	5,196,854 – 5,196,971	- - - - - - - -	8626	5,196,854 – 5,196,971	+	5	120	76.46	-3.12	0.49	0.993260
6279	dm3.chr3L	5,225,945 – 5,226,047	- - - intron="intron;ID=intron_FBgn0052423:15_FBgn0052423:14;Name=shep-in;Parent=FBtr0077174;parent_type=mRNA" - - - -	8632	5,225,945 – 5,226,047	-	11	113	81.35	-2.17	0.68	0.973702
6285	dm3.chr3L	5,260,521 – 5,260,596	- - - - - - - -	8639	5,260,521 – 5,260,596	-	5	75	88.40	-3.32	0.80	0.995621
6289	dm3.chr3L	5,335,175 – 5,335,274	FBnoncoding="tRNA;ID=FBtr0077142;Name=tRNA:S7:64D-RA;Parent=FBgn0011986;Dbxref=FlyBase_Annotation_IDs:CR32419-RA;score_text=Weakly" tRNAscann="Ser_chr3L_trna19" - - "Rfam_10.0=RF00005;tRNA;BABH01061698.1/19-99\|2.9e-35" - - -	8643	5,335,175 – 5,335,274	+	13	100	89.20	-1.23	0.98	0.918830
6293	dm3.chr3L	5,344,730 – 5,344,827	- - - - - - - -	8650	5,344,730 – 5,344,827	+	6	111	76.26	-2.98	0.50	0.992238
6293	dm3.chr3L	5,344,730 – 5,344,827	- - - - - - - -	8651	5,344,730 – 5,344,827	-	6	111	76.26	-2.35	0.69	0.992316
6294	dm3.chr3L	5,349,426 – 5,349,533	FBnoncoding="tRNA;ID=FBtr0077143;Name=tRNA:CR32420-RA;Parent=FBgn0052420;Alias=CR32420-RA;Dbxref=FlyBase_Annotation_IDs:CR32420-RA;score_text=Weakly" tRNAscann="Val_chr3L_trna20" - - "Rfam_10.0=RF00005;tRNA;AAPU01011572.1/112057-112129\|3.0e-32" - - -	8652	5,349,426 – 5,349,533	+	13	115	83.43	-1.43	0.86	0.933982
6294	dm3.chr3L	5,349,426 – 5,349,533		8653	5,349,426 – 5,349,533	-	13	115	83.43	-2.48	0.90	0.995863
6295	dm3.chr3L	5,349,761 – 5,349,839	FBnoncoding="tRNA;ID=FBtr0077158;Name=tRNA:CR32421-RA;Parent=FBgn0052421;Alias=CR32421-RA;Dbxref=FlyBase_Annotation_IDs:CR32421-RA;score_text=Weakly" tRNAscann="Val_chr3L_trna46" - - "Rfam_10.0=RF00005;tRNA;AAPU01011572.1/112057-112129\|2.1e-32" - - -	8654	5,349,761 – 5,349,839	+	13	78	95.51	-2.93	1.00	0.997292
6295	dm3.chr3L	5,349,761 – 5,349,839		8655	5,349,761 – 5,349,839	-	13	78	95.51	-2.12	1.01	0.989358
6298	dm3.chr3L	5,389,118 – 5,389,208	- - - - - - - -	8658	5,389,118 – 5,389,208	+	8	98	74.39	-1.37	0.61	0.902400
6301	dm3.chr3L	5,399,589 – 5,399,697	- - - - - - - -	8661	5,399,589 – 5,399,697	-	9	120	76.27	-1.19	0.78	0.941561
6302	dm3.chr3L	5,404,023 – 5,404,138	- - - - - - - -	8663	5,404,023 – 5,404,115	-	12	111	87.15	-1.93	0.83	0.930662
6303	dm3.chr3L	5,407,710 – 5,407,803	- - - - - - - -	8666	5,407,710 – 5,407,803	+	7	101	69.71	-1.66	0.55	0.974479
6305	dm3.chr3L	5,414,959 – 5,415,162	- - - - - - - -	8669	5,415,035 – 5,415,132	+	11	112	62.34	-1.60	0.58	0.998945
6308	dm3.chr3L	5,428,646 – 5,428,777	- - CDS="CDS;ID=CDS_FBgn0085420:5_375;Name=CG34391-cds;Parent=FBtr0112634;parent_type=mRNA" - - - - -	8673	5,428,646 – 5,428,777	+	11	143	75.01	-1.33	0.76	0.974364
6309	dm3.chr3L	5,433,865 – 5,433,962	- - - - - - - -	8675	5,433,865 – 5,433,962	+	5	98	79.47	-1.97	0.64	0.903186
6309	dm3.chr3L	5,433,865 – 5,433,962	- - - - - - - -	8676	5,433,865 – 5,433,962	-	5	98	79.47	-1.95	0.65	0.907427
6310	dm3.chr3L	5,445,685 – 5,445,735	- - - - - - - -	8677	5,445,685 – 5,445,735	-	8	56	61.36	-1.60	0.37	0.949999
6312	dm3.chr3L	5,462,893 – 5,462,944	- - - - - - - -	8679	5,462,893 – 5,462,944	-	6	56	72.91	-1.87	0.50	0.906666
6314	dm3.chr3L	5,470,862 – 5,470,922	- - - - - - - -	8681	5,470,862 – 5,470,922	-	5	60	90.33	-2.03	0.88	0.939474
6315	dm3.chr3L	5,471,508 – 5,471,655	- - - - - - - -	8683	5,471,558 – 5,471,655	-	12	107	74.13	-1.23	0.70	0.976997
6317	dm3.chr3L	5,501,957 – 5,502,090	- - - intron="intron;ID=intron_FBgn0085371:9_FBgn0085371:8;Name=CG34342-in;Parent=FBtr0300031,FBtr0301080;parent_type=mRNA" - - - -	8685	5,501,957 – 5,502,051	+	6	100	68.46	-1.66	0.73	0.995964
6322	dm3.chr3L	5,536,590 – 5,536,700	- - - intron="intron;ID=intron_FBgn0035612:15_FBgn0035612:14;Name=CG10625-in;Parent=FBtr0077139,FBtr0077140,FBtr0113144,FBtr0273231;parent_type=mRNA" - - - -	8694	5,536,590 – 5,536,700	+	5	113	79.00	-3.08	0.43	0.950968
6322	dm3.chr3L	5,536,590 – 5,536,700		8695	5,536,590 – 5,536,700	-	5	113	79.00	-4.60	0.62	0.999734
6325	dm3.chr3L	5,576,732 – 5,576,837	- - - - - - - -	8698	5,576,732 – 5,576,837	+	6	109	74.37	-2.24	0.48	0.955307
6325	dm3.chr3L	5,576,732 – 5,576,837	- - - - - - - -	8699	5,576,732 – 5,576,837	-	6	109	74.37	-2.69	0.60	0.997531
6326	dm3.chr3L	5,597,789 – 5,597,874	- - - - - - - -	8700	5,597,789 – 5,597,874	+	3	86	75.19	-3.24	0.45	0.973779
6331	dm3.chr3L	5,701,524 – 5,701,658	- - - intron="intron;ID=intron_FBgn0085447:20_FBgn0085447:21;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112711,FBtr0112712,FBtr0112713,FBtr0112714;parent_type=mRNA" - - - -	8706	5,701,524 – 5,701,658	+	6	152	70.98	-1.99	0.50	0.960924
6331	dm3.chr3L	5,701,524 – 5,701,658		8707	5,701,524 – 5,701,658	-	6	152	70.98	-2.13	0.52	0.982134
6335	dm3.chr3L	5,714,680 – 5,714,791	- - - intron="intron;ID=intron_FBgn0085447:23_FBgn0085447:24;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112711,FBtr0112712,FBtr0112713,FBtr0112714;parent_type=mRNA" - - - -	8711	5,714,680 – 5,714,791	+	7	114	52.09	-3.40	-0.00	0.938655
6335	dm3.chr3L	5,714,680 – 5,714,791		8712	5,714,680 – 5,714,791	-	7	114	52.09	-3.66	-0.00	0.974139
6337	dm3.chr3L	5,716,523 – 5,716,616	- - - intron="intron;ID=intron_FBgn0085447:24_FBgn0085447:25;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112711,FBtr0112712,FBtr0112713,FBtr0112714;parent_type=mRNA" - - - -	8714	5,716,523 – 5,716,616	-	10	95	72.64	-1.89	0.40	0.928541
6338	dm3.chr3L	5,730,566 – 5,730,658	- - - intron="intron;ID=intron_FBgn0085447:31_FBgn0085447:32;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112711,FBtr0112712,FBtr0112713,FBtr0112714;parent_type=mRNA" - - - -	8715	5,730,566 – 5,730,658	-	9	98	78.08	-2.82	0.70	0.998033
6339	dm3.chr3L	5,733,492 – 5,733,611	- - - intron="intron;ID=intron_FBgn0085447:38_FBgn0085447:42;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112713;parent_type=mRNA" - - - -	8716	5,733,492 – 5,733,611	+	8	119	87.48	-2.27	0.71	0.908736
6340	dm3.chr3L	5,735,091 – 5,735,196	- - - intron="intron;ID=intron_FBgn0085447:39_FBgn0085447:41;Name=sif-in;Parent=FBtr0112711;parent_type=mRNA" - - - -	8717	5,735,091 – 5,735,196	+	13	120	85.84	-2.25	0.71	0.943331
6340	dm3.chr3L	5,735,091 – 5,735,196		8718	5,735,091 – 5,735,196	-	13	120	85.84	-2.01	0.78	0.942760
6341	dm3.chr3L	5,756,483 – 5,756,575	- - - intron="intron;ID=intron_FBgn0035630:4_FBgn0035630:3;Name=CG10576-in;Parent=FBtr0077121;parent_type=mRNA" - "Noncode_2.0=n3509_u3137_AJ544007_snoRNA_Drosophila\|2.0e-14" "unique_Noncode_2.0=u3137_snoRNA_Drosophila\|1.7e-14" -	8719	5,756,483 – 5,756,575	-	10	100	62.49	-1.42	0.69	0.998406
6347	dm3.chr3L	5,767,820 – 5,767,914	- - - intron="intron;ID=intron_CG5505:4_CG5505:5;Name=scny-in;Parent=FBtr0077099,FBtr0077102,FBtr0077104;parent_type=mRNA" - - - -	8729	5,767,820 – 5,767,914	+	10	97	60.15	-1.76	0.30	0.918602
6348	dm3.chr3L	5,768,975 – 5,769,087	- - - - - - - -	8731	5,768,975 – 5,769,087	-	5	116	85.45	-3.01	0.65	0.979117
6352	dm3.chr3L	5,836,550 – 5,836,664	- - CDS="CDS;ID=CDS_FBgn0003984:8_344;Name=vn-cds;Parent=FBtr0300010;parent_type=mRNA" - - - - -	8736	5,836,550 – 5,836,664	-	11	123	76.43	-1.65	0.60	0.940758
6353	dm3.chr3L	5,837,851 – 5,837,947	- - - - - - - -	8737	5,837,851 – 5,837,947	+	6	102	85.99	-2.51	0.68	0.940077
6354	dm3.chr3L	5,838,691 – 5,838,998	- - - - - - - -	8738	5,838,691 – 5,838,810	+	5	120	96.06	-2.34	0.87	0.921321
6354	dm3.chr3L	5,838,691 – 5,838,998	- - - - - - - -	8739	5,838,730 – 5,838,850	+	5	120	96.42	-2.11	0.91	0.921041
6355	dm3.chr3L	5,840,196 – 5,840,288	- - - - - - - -	8743	5,840,196 – 5,840,288	-	5	95	83.55	-1.29	1.00	0.946262
6358	dm3.chr3L	5,869,399 – 5,869,533	- - - - - - - -	8747	5,869,399 – 5,869,503	+	7	108	70.96	-2.02	0.47	0.967050
6358	dm3.chr3L	5,869,399 – 5,869,533	- - - - - - - -	8748	5,869,426 – 5,869,533	+	8	113	70.89	-2.31	0.42	0.970644
6359	dm3.chr3L	5,875,284 – 5,875,334	- - - - - - - -	8749	5,875,284 – 5,875,334	-	6	50	88.67	-2.33	0.74	0.909133
6360	dm3.chr3L	5,909,517 – 5,909,646	- - - intron="intron;ID=intron_FBgn0035648:6_FBgn0035648:7;Name=CG13288-in;Parent=FBtr0113148;parent_type=mRNA" - - - -	8750	5,909,517 – 5,909,620	-	6	109	73.14	-2.11	0.47	0.942526
6360	dm3.chr3L	5,909,517 – 5,909,646		8751	5,909,547 – 5,909,646	-	6	110	73.44	-2.90	0.48	0.994499
6364	dm3.chr3L	5,987,755 – 5,987,846	- - - - - - - -	8755	5,987,755 – 5,987,846	+	12	111	79.70	-3.50	0.40	0.988290
6366	dm3.chr3L	6,004,344 – 6,004,435	- - - - - - - -	8758	6,004,344 – 6,004,435	+	6	92	74.37	-1.64	0.66	0.971086
6368	dm3.chr3L	6,021,832 – 6,021,928	- - - - - - - -	8761	6,021,832 – 6,021,928	+	10	114	75.67	-2.41	0.42	0.934442
6368	dm3.chr3L	6,021,832 – 6,021,928	- - - - - - - -	8762	6,021,832 – 6,021,928	-	10	114	75.67	-2.37	0.41	0.910830
6370	dm3.chr3L	6,040,883 – 6,041,009	- - - - - - - -	8764	6,040,883 – 6,040,976	+	6	93	92.76	-2.33	0.90	0.970232
				8765	6,040,883 – 6,040,976	-	6	93	92.76	-2.05	0.88	0.916817
				8766	6,040,914 – 6,041,009	+	6	100	86.34	-2.34	0.70	0.906668
6378	dm3.chr3L	6,108,027 – 6,108,129	- - - intron="intron;ID=intron_FBgn0005658:8_FBgn0005658:9;Name=Ets65A-in;Parent=FBtr0077054,FBtr0077055,FBtr0273355;parent_type=mRNA" - - - -	8776	6,108,027 – 6,108,129	-	10	116	67.22	-1.44	0.49	0.955911
6381	dm3.chr3L	6,131,863 – 6,132,034	- - - - - - - -	8779	6,131,863 – 6,131,922	+	8	59	95.28	-2.09	0.91	0.931172
6381	dm3.chr3L	6,131,863 – 6,132,034	- - - - - - - -	8780	6,131,863 – 6,131,922	-	8	59	95.28	-2.77	0.77	0.911144
6384	dm3.chr3L	6,178,195 – 6,178,300	- - - - - - - -	8784	6,178,195 – 6,178,298	-	5	119	79.67	-2.25	0.71	0.961472
6384	dm3.chr3L	6,178,195 – 6,178,300	- - - - - - - -	8785	6,178,197 – 6,178,300	-	5	119	79.67	-2.29	0.75	0.976757
6386	dm3.chr3L	6,232,865 – 6,232,926	- - - - - - - -	8788	6,232,865 – 6,232,926	-	6	61	84.70	-2.61	0.74	0.985684
6388	dm3.chr3L	6,257,661 – 6,257,819	- - - - - - - -	8790	6,257,661 – 6,257,779	+	5	120	79.56	-3.06	0.58	0.993324
6390	dm3.chr3L	6,266,051 – 6,266,110	- - - - - - - -	8793	6,266,051 – 6,266,110	+	5	62	61.03	-0.98	0.56	0.942432
6393	dm3.chr3L	6,316,315 – 6,316,430	- - - - - - - -	8797	6,316,315 – 6,316,430	-	7	118	70.87	-1.39	0.57	0.951241
6397	dm3.chr3L	6,355,701 – 6,355,816	- - - - - - - -	8801	6,355,701 – 6,355,805	-	5	104	84.37	-2.54	0.76	0.980364
6397	dm3.chr3L	6,355,701 – 6,355,816	- - - - - - - -	8802	6,355,712 – 6,355,816	-	4	104	78.40	-2.28	0.80	0.986584
6405	dm3.chr3L	6,428,893 – 6,428,989	- - - intron="intron;ID=intron_FBgn0261801:1_FBgn0261801:2;Name=CG42747-in;Parent=FBtr0303270;parent_type=mRNA" - - - -	8812	6,428,893 – 6,428,989	-	4	96	72.05	-2.48	0.65	0.995297
6406	dm3.chr3L	6,437,030 – 6,437,132	- - - intron="intron;ID=intron_FBgn0261801:1_FBgn0261801:2;Name=CG42747-in;Parent=FBtr0303270;parent_type=mRNA" - - - -	8813	6,437,030 – 6,437,132	+	12	120	81.37	-2.38	0.57	0.934584
6410	dm3.chr3L	6,497,524 – 6,497,619	- - - intron="intron;ID=intron_FBgn0020251:1_FBgn0020251:2;Name=sfl-in;Parent=FBtr0076968;parent_type=mRNA" - - - -	8818	6,497,524 – 6,497,619	+	6	96	75.62	-2.16	0.72	0.992419
6410	dm3.chr3L	6,497,524 – 6,497,619		8819	6,497,524 – 6,497,619	-	6	96	75.62	-2.20	0.70	0.992367
6413	dm3.chr3L	6,504,042 – 6,504,153	- - - intron="intron;ID=intron_FBgn0020251:2_FBgn0020251:3;Name=sfl-in;Parent=FBtr0076968;parent_type=mRNA" - - - -	8823	6,504,042 – 6,504,139	+	7	100	79.13	-2.27	0.66	0.986951
6415	dm3.chr3L	6,531,541 – 6,531,594	- - - intron="intron;ID=intron_FBgn0020251:4_FBgn0020251:5;Name=sfl-in;Parent=FBtr0076968,FBtr0301562;parent_type=mRNA" - - - -	8826	6,531,541 – 6,531,594	+	9	66	91.95	-3.69	0.69	0.991214
6415	dm3.chr3L	6,531,541 – 6,531,594		8827	6,531,541 – 6,531,594	-	9	66	91.95	-2.68	0.87	0.984096
6416	dm3.chr3L	6,537,182 – 6,537,274	- - - intron="intron;ID=intron_FBgn0020251:4_FBgn0020251:5;Name=sfl-in;Parent=FBtr0076968,FBtr0301562;parent_type=mRNA" - - - -	8828	6,537,182 – 6,537,274	+	6	96	74.71	-2.27	0.56	0.987060
6417	dm3.chr3L	6,541,915 – 6,542,016	- - - - - - - -	8829	6,541,915 – 6,542,016	+	7	113	77.60	-1.64	0.68	0.924238
6418	dm3.chr3L	6,543,735 – 6,543,869	- - - - - - - -	8832	6,543,735 – 6,543,831	-	6	118	68.71	-1.60	0.54	0.934727
6418	dm3.chr3L	6,543,735 – 6,543,869	- - - - - - - -	8833	6,543,753 – 6,543,869	-	6	118	76.10	-2.24	0.53	0.964978
6419	dm3.chr3L	6,564,948 – 6,565,073	- - CDS="CDS;ID=CDS_FBgn0052397:5_342;Name=CG32397-cds;Parent=FBtr0076985;parent_type=mRNA" - - - - -	8835	6,564,948 – 6,565,044	-	9	97	66.28	-1.39	0.50	0.982814
6419	dm3.chr3L	6,564,948 – 6,565,073		8836	6,564,982 – 6,565,073	-	12	112	73.67	-1.72	0.53	0.917900
6420	dm3.chr3L	6,572,659 – 6,572,752	- - - intron="intron;ID=intron_FBgn0052397:6_FBgn0052397:5;Name=CG32397-in;Parent=FBtr0076985;parent_type=mRNA" - - - -	8837	6,572,659 – 6,572,752	+	7	99	74.52	-2.58	0.38	0.939748
6420	dm3.chr3L	6,572,659 – 6,572,752		8838	6,572,659 – 6,572,752	-	7	99	74.52	-3.23	0.49	0.998608
6421	dm3.chr3L	6,574,781 – 6,574,938	- - - intron="intron;ID=intron_FBgn0052397:6_FBgn0052397:5;Name=CG32397-in;Parent=FBtr0076985;parent_type=mRNA" - - - -	8839	6,574,781 – 6,574,901	+	4	120	56.60	-2.45	0.23	0.915498
6421	dm3.chr3L	6,574,781 – 6,574,938		8840	6,574,781 – 6,574,901	-	4	120	56.60	-2.36	0.40	0.997315
6422	dm3.chr3L	6,587,042 – 6,587,103	- - - - - - - -	8842	6,587,042 – 6,587,103	-	12	64	75.72	-1.28	0.80	0.974144
6425	dm3.chr3L	6,624,705 – 6,624,757	- - - intron="intron;ID=intron_CG8442:5_CG8442:6;Name=Glu-RI-in;Parent=FBtr0076982;parent_type=mRNA" - - - -	8845	6,624,705 – 6,624,757	+	5	52	90.00	-1.80	0.90	0.916549
6427	dm3.chr3L	6,646,724 – 6,646,902	- - - - - - - -	8850	6,646,724 – 6,646,822	-	8	113	67.88	-1.44	0.53	0.951754
6430	dm3.chr3L	6,661,069 – 6,661,157	- - - - - - - -	8854	6,661,069 – 6,661,157	+	6	91	76.20	-1.75	0.66	0.939505
6430	dm3.chr3L	6,661,069 – 6,661,157	- - - - - - - -	8855	6,661,069 – 6,661,157	-	6	91	76.20	-2.34	0.67	0.991591
6431	dm3.chr3L	6,666,964 – 6,667,041	- - - - - - - -	8856	6,666,964 – 6,667,041	+	5	79	87.63	-2.13	0.87	0.962886
6431	dm3.chr3L	6,666,964 – 6,667,041	- - - - - - - -	8857	6,666,964 – 6,667,041	-	5	79	87.63	-1.90	0.90	0.951761
6433	dm3.chr3L	6,680,210 – 6,680,304	- - - - - - - -	8859	6,680,210 – 6,680,304	-	9	119	73.15	-1.36	0.65	0.914708
6436	dm3.chr3L	6,704,322 – 6,704,417	- - - - - - - -	8862	6,704,322 – 6,704,417	+	4	96	94.76	-3.63	0.92	0.997460
6436	dm3.chr3L	6,704,322 – 6,704,417	- - - - - - - -	8863	6,704,322 – 6,704,417	-	4	96	94.76	-2.91	0.94	0.993416
6438	dm3.chr3L	6,713,841 – 6,713,944	- - - - - - - -	8865	6,713,841 – 6,713,944	+	6	105	74.01	-1.94	0.56	0.969088
6442	dm3.chr3L	6,749,831 – 6,749,933	- - - - - - - -	8869	6,749,831 – 6,749,933	+	9	109	63.53	-2.72	0.41	0.999245
6442	dm3.chr3L	6,749,831 – 6,749,933	- - - - - - - -	8870	6,749,831 – 6,749,933	-	9	109	63.53	-3.56	0.53	0.999967
6444	dm3.chr3L	6,759,631 – 6,759,687	- - - - - - - -	8872	6,759,631 – 6,759,687	+	12	58	93.69	-2.99	0.82	0.984164
6444	dm3.chr3L	6,759,631 – 6,759,687	- - - - - - - -	8873	6,759,631 – 6,759,687	-	12	58	93.69	-2.91	0.88	0.990504
6445	dm3.chr3L	6,762,396 – 6,762,493	- - - - - - - -	8874	6,762,396 – 6,762,493	-	5	99	87.84	-3.47	0.82	0.997207
6447	dm3.chr3L	6,767,917 – 6,768,027	- - - - - - - -	8876	6,767,917 – 6,768,027	+	6	110	91.15	-2.68	0.93	0.993351
6447	dm3.chr3L	6,767,917 – 6,768,027	- - - - - - - -	8877	6,767,917 – 6,768,027	-	6	110	91.15	-2.62	1.00	0.996376
6450	dm3.chr3L	6,786,020 – 6,786,180	- - - - - - - -	8880	6,786,020 – 6,786,136	+	11	120	85.96	-2.35	0.64	0.900536
				8881	6,786,060 – 6,786,167	+	11	121	79.27	-3.37	0.57	0.998400
				8882	6,786,077 – 6,786,180	+	11	121	70.66	-1.47	0.55	0.936445
6454	dm3.chr3L	6,815,020 – 6,815,111	- - - - - - - -	8887	6,815,020 – 6,815,111	-	8	101	81.85	-2.10	0.67	0.936655
6455	dm3.chr3L	6,823,157 – 6,823,255	- - - - - - - -	8888	6,823,157 – 6,823,247	+	12	116	83.49	-3.27	0.58	0.991561
				8889	6,823,157 – 6,823,247	-	12	116	83.49	-2.54	0.61	0.940110
				8890	6,823,157 – 6,823,255	+	12	118	81.38	-3.27	0.55	0.995211
				8891	6,823,157 – 6,823,255	-	12	118	81.38	-2.70	0.57	0.978459
6461	dm3.chr3L	6,857,960 – 6,858,051	- - - - - - - -	8898	6,857,960 – 6,858,051	-	8	95	87.23	-2.14	0.92	0.983307
6464	dm3.chr3L	6,891,092 – 6,891,185	- - - - - - - -	8902	6,891,092 – 6,891,185	+	12	104	85.20	-3.39	0.66	0.996188
6464	dm3.chr3L	6,891,092 – 6,891,185	- - - - - - - -	8903	6,891,092 – 6,891,185	-	12	104	85.20	-3.79	0.65	0.998346
6465	dm3.chr3L	6,892,529 – 6,892,684	- - - - - - - -	8904	6,892,529 – 6,892,646	+	4	117	88.12	-2.63	0.73	0.939536
6465	dm3.chr3L	6,892,529 – 6,892,684	- - - - - - - -	8906	6,892,569 – 6,892,684	+	3	115	95.31	-3.50	0.94	0.997115
6467	dm3.chr3L	6,915,983 – 6,916,080	- - - - - - - -	8909	6,915,983 – 6,916,080	-	8	105	77.63	-2.69	0.58	0.991915
6473	dm3.chr3L	6,941,475 – 6,941,565	- - CDS="CDS;ID=CDS_FBgn0035719:9_360;Name=tow-cds;Parent=FBtr0113150;parent_type=mRNA" - - - - -	8916	6,941,475 – 6,941,565	-	12	90	96.06	-1.73	0.97	0.935603
6477	dm3.chr3L	6,978,416 – 6,978,486	- - - - - - - -	8920	6,978,416 – 6,978,486	+	8	83	65.89	-1.35	0.50	0.948137
6479	dm3.chr3L	6,992,560 – 6,992,662	- - - - - - - -	8922	6,992,560 – 6,992,662	-	6	105	78.72	-2.85	0.46	0.969236
6484	dm3.chr3L	7,028,719 – 7,028,779	- - - intron="intron;ID=intron_FBgn0260660:12_FBgn0260660:13;Name=mp-in;Parent=FBtr0301113;parent_type=mRNA" - - - -	8927	7,028,719 – 7,028,779	+	5	60	89.73	-3.01	0.77	0.985122
6485	dm3.chr3L	7,030,595 – 7,030,784	- - - intron="intron;ID=intron_FBgn0260660:14_FBgn0260660:15;Name=mp-in;Parent=FBtr0301111;parent_type=mRNA" - - - -	8928	7,030,595 – 7,030,688	+	8	113	75.55	-2.22	0.54	0.976620
				8929	7,030,595 – 7,030,688	-	8	113	75.55	-1.49	0.63	0.908683
				8932	7,030,688 – 7,030,784	-	5	97	67.85	-2.06	0.47	0.981381
6486	dm3.chr3L	7,030,952 – 7,031,073	- - - intron="intron;ID=intron_FBgn0260660:14_FBgn0260660:15;Name=mp-in;Parent=FBtr0301111;parent_type=mRNA" - - - -	8933	7,030,952 – 7,031,073	+	7	122	77.30	-1.81	0.70	0.968576
6487	dm3.chr3L	7,036,578 – 7,036,709	- - CDS="CDS;ID=CDS_FBgn0260660:18_428;Name=mp-cds;Parent=FBtr0301105,FBtr0301106,FBtr0301107,FBtr0301108,FBtr0301109,FBtr0301113,FBtr0301114,FBtr0301958;parent_type=mRNA" - - - - -	8934	7,036,578 – 7,036,709	+	10	148	62.19	-1.92	0.37	0.989985
6487	dm3.chr3L	7,036,578 – 7,036,709		8935	7,036,578 – 7,036,709	-	10	148	62.19	-1.99	0.33	0.981115
6488	dm3.chr3L	7,046,235 – 7,046,334	- - - - - - - -	8936	7,046,235 – 7,046,334	+	3	99	100.00	-2.66	1.00	0.991947
6489	dm3.chr3L	7,055,209 – 7,055,284	- - - intron="intron;ID=intron_FBgn0035733:4_FBgn0035733:3;Name=CG8641-in;Parent=FBtr0076931;parent_type=mRNA" - - - -	8937	7,055,209 – 7,055,284	+	5	75	94.40	-2.70	0.88	0.978683
6489	dm3.chr3L	7,055,209 – 7,055,284		8938	7,055,209 – 7,055,284	-	5	75	94.40	-3.40	0.93	0.997043
6494	dm3.chr3L	7,084,197 – 7,084,292	- - - - - - - -	8944	7,084,197 – 7,084,292	-	6	95	75.72	-2.29	0.63	0.992793
6499	dm3.chr3L	7,143,274 – 7,143,335	- - - intron="intron;ID=intron_FBgn0259173:9_FBgn0259173:8;Name=corn-in;Parent=FBtr0299640,FBtr0299641;parent_type=mRNA" - - - -	8949	7,143,274 – 7,143,335	-	6	67	80.63	-2.06	0.80	0.979355
6500	dm3.chr3L	7,143,625 – 7,143,787	- - - intron="intron;ID=intron_FBgn0259173:9_FBgn0259173:8;Name=corn-in;Parent=FBtr0299640,FBtr0299641;parent_type=mRNA" - - - -	8950	7,143,625 – 7,143,724	+	5	108	90.74	-2.77	0.81	0.975964
6503	dm3.chr3L	7,151,742 – 7,151,843	- - - - - - - -	8954	7,151,742 – 7,151,843	+	10	107	78.17	-2.12	0.48	0.917506
6505	dm3.chr3L	7,168,921 – 7,169,014	- - - intron="intron;ID=intron_FBgn0259141:23_FBgn0259141:22;Name=CG42256-in;Parent=FBtr0299549,FBtr0299550,FBtr0299551,FBtr0299552,FBtr0299547,FBtr0299548,FBtr0302123,FBtr0302124;parent_type=mRNA" - - - -	8956	7,168,921 – 7,169,014	+	5	96	68.76	-1.71	0.58	0.970402
6511	dm3.chr3L	7,191,493 – 7,191,560	- - - - - - - -	8964	7,191,493 – 7,191,560	-	11	78	78.96	-1.88	0.71	0.971254
6513	dm3.chr3L	7,204,372 – 7,204,422	- - - - - - - -	8966	7,204,372 – 7,204,422	+	3	50	94.67	-1.94	0.97	0.958971
6515	dm3.chr3L	7,223,380 – 7,223,515	- - - - - - - -	8970	7,223,418 – 7,223,515	+	5	97	91.96	-3.00	0.78	0.979652
6517	dm3.chr3L	7,225,624 – 7,225,741	- - - - - - - -	8973	7,225,624 – 7,225,737	-	11	117	94.19	-2.03	0.95	0.969332
6519	dm3.chr3L	7,247,564 – 7,247,654	- - - intron="intron;ID=intron_CG14830:2_CG14830:3;Name=CG14830-in;Parent=FBtr0076888;parent_type=mRNA" - - - -	8976	7,247,564 – 7,247,654	+	8	117	68.30	-2.09	0.46	0.956139
6520	dm3.chr3L	7,294,341 – 7,294,437	- - - - - - - -	8978	7,294,341 – 7,294,437	+	8	107	70.22	-1.34	0.52	0.933021
6522	dm3.chr3L	7,328,330 – 7,328,424	- - - - - - - -	8980	7,328,330 – 7,328,424	+	7	95	68.67	-2.73	0.37	0.990711
6524	dm3.chr3L	7,345,257 – 7,345,397	- - - - - - - -	8984	7,345,257 – 7,345,397	-	6	141	64.29	-0.81	0.72	0.976727
6527	dm3.chr3L	7,429,963 – 7,430,061	- - CDS="CDS;ID=CDS_FBgn0035782:1_352;Name=CG14835-cds;Parent=FBtr0076866;parent_type=mRNA" intron="intron;ID=intron_FBgn0259935:1_FBgn0259935:2;Name=CG42458-in;Parent=FBtr0300248,FBtr0304991;parent_type=mRNA" - - - -	8987	7,429,963 – 7,430,061	+	6	111	61.72	-1.10	0.44	0.909718
6531	dm3.chr3L	7,443,084 – 7,443,224	- - - - - - - -	8991	7,443,084 – 7,443,190	+	9	118	81.91	-4.31	0.61	0.999596
				8992	7,443,084 – 7,443,190	-	9	118	81.91	-2.76	0.83	0.996786
				8993	7,443,124 – 7,443,224	+	10	119	71.63	-1.76	0.51	0.967753
				8994	7,443,124 – 7,443,224	-	10	119	71.63	-1.92	0.53	0.986186
6535	dm3.chr3L	7,468,454 – 7,468,547	- - - - - - - -	8998	7,468,454 – 7,468,547	-	6	105	77.06	-2.28	0.57	0.966912
6538	dm3.chr3L	7,524,030 – 7,524,129	- - - intron="intron;ID=intron_FBgn0028582:1_FBgn0028582:3;Name=lqf-in;Parent=FBtr0076798;parent_type=mRNA" - - - -	9002	7,524,030 – 7,524,129	-	5	100	84.45	-2.51	0.72	0.962267
6544	dm3.chr3L	7,565,765 – 7,565,839	- - - - - - - -	9008	7,565,765 – 7,565,839	+	11	78	77.60	-1.58	0.56	0.903783
6544	dm3.chr3L	7,565,765 – 7,565,839	- - - - - - - -	9009	7,565,765 – 7,565,839	-	11	78	77.60	-1.91	0.52	0.944136
6545	dm3.chr3L	7,573,193 – 7,573,330	- - - - - - - -	9010	7,573,193 – 7,573,292	+	3	99	86.49	-3.89	0.84	0.998449
				9011	7,573,193 – 7,573,292	-	3	99	86.49	-3.78	0.80	0.997790
				9012	7,573,230 – 7,573,330	+	3	100	72.56	-3.07	0.82	0.998078
6546	dm3.chr3L	7,592,283 – 7,592,333	- - - intron="intron;ID=intron_FBgn0035802:1_FBgn0035802:2;Name=CG33275-in;Parent=FBtr0089850;parent_type=mRNA" - - - -	9014	7,592,283 – 7,592,333	+	10	60	86.18	-1.91	0.83	0.933713
6546	dm3.chr3L	7,592,283 – 7,592,333		9015	7,592,283 – 7,592,333	-	10	60	86.18	-2.22	0.85	0.977085
6553	dm3.chr3L	7,624,025 – 7,624,118	- - - intron="intron;ID=intron_FBgn0035802:10_FBgn0035802:12;Name=CG33275-in;Parent=FBtr0089850,FBtr0089849;parent_type=mRNA" - - - -	9022	7,624,025 – 7,624,118	+	12	108	78.09	-1.62	0.73	0.968463
6559	dm3.chr3L	7,687,251 – 7,687,348	- - - intron="intron;ID=intron_FBgn0261687:13_FBgn0261687:10;Name=Ank2-in;Parent=FBtr0303125;parent_type=mRNA" - - - -	9028	7,687,251 – 7,687,348	+	3	97	94.50	-2.29	0.98	0.985667
6561	dm3.chr3L	7,773,897 – 7,773,996	- - CDS="CDS;ID=CDS_FBgn0052369:4_469;Name=CG32369-cds;Parent=FBtr0076783;parent_type=mRNA" - - - - -	9030	7,773,897 – 7,773,996	-	12	111	70.57	-0.79	0.64	0.935236
6562	dm3.chr3L	7,776,566 – 7,776,630	- - - intron="intron;ID=intron_FBgn0052369:8_FBgn0052369:5;Name=CG32369-in;Parent=FBtr0304992;parent_type=mRNA" - - - -	9031	7,776,566 – 7,776,630	+	3	64	96.35	-2.56	1.02	0.995004
6563	dm3.chr3L	7,784,085 – 7,784,236	- - - intron="intron;ID=intron_FBgn0052369:8_FBgn0052369:5;Name=CG32369-in;Parent=FBtr0304992;parent_type=mRNA" - - - -	9033	7,784,122 – 7,784,236	+	6	120	79.82	-1.83	0.68	0.920361
6564	dm3.chr3L	7,796,592 – 7,796,687	- - CDS="CDS;ID=CDS_FBgn0052369:8_462;Name=CG32369-cds;Parent=FBtr0304992;parent_type=mRNA" - - - - -	9034	7,796,592 – 7,796,687	+	11	121	71.55	-2.06	0.57	0.991260
6565	dm3.chr3L	7,810,966 – 7,811,074	- - - intron="intron;ID=intron_FBgn0016694:5_FBgn0016694:4;Name=Pdp1-in;Parent=FBtr0076775,FBtr0076776,FBtr0076777,FBtr0076780,FBtr0076782,FBtr0300499,FBtr0300500;parent_type=mRNA" - - - -	9035	7,810,966 – 7,811,074	+	5	118	77.19	-3.76	0.56	0.999162
6565	dm3.chr3L	7,810,966 – 7,811,074		9036	7,810,966 – 7,811,074	-	5	118	77.19	-5.01	0.60	0.999859
6570	dm3.chr3L	7,865,084 – 7,865,158	- - - intron="intron;ID=intron_CG32365:2_CG32365:3;Name=CG32365-in;Parent=FBtr0076746;parent_type=mRNA" - - - -	9041	7,865,084 – 7,865,158	+	10	75	92.48	-3.13	0.72	0.974079
6570	dm3.chr3L	7,865,084 – 7,865,158		9042	7,865,084 – 7,865,158	-	10	75	92.48	-2.12	0.87	0.936041
6571	dm3.chr3L	7,866,384 – 7,866,538	- - - intron="intron;ID=intron_CG32365:2_CG32365:3;Name=CG32365-in;Parent=FBtr0076746;parent_type=mRNA" - - - -	9044	7,866,420 – 7,866,538	-	6	120	83.03	-2.26	0.75	0.974900
6574	dm3.chr3L	7,885,592 – 7,885,716	- - - intron="intron;ID=intron_CG32365:3_CG32365:4;Name=CG32365-in;Parent=FBtr0076746;parent_type=mRNA" - "Noncode_2.0=n205038_u199999_AK083634_mRNAlike\|4.1e-07" "unique_Noncode_2.0=u199999_mRNAlike\|3.6e-07" -	9049	7,885,625 – 7,885,716	+	5	95	73.71	-1.62	0.63	0.917168
6575	dm3.chr3L	7,923,103 – 7,923,204	- - CDS="CDS;ID=CDS_FBgn0024187:6_360;Name=syd-cds;Parent=FBtr0076769,FBtr0300413;parent_type=mRNA" - - - - -	9051	7,923,103 – 7,923,204	+	13	110	73.26	-1.80	0.50	0.979894
6578	dm3.chr3L	7,932,887 – 7,932,981	- - - - - - - -	9055	7,932,887 – 7,932,981	+	12	109	73.91	-1.47	0.57	0.922323
6581	dm3.chr3L	7,953,664 – 7,953,715	- - - - - - - -	9058	7,953,664 – 7,953,715	-	5	56	72.76	-2.13	0.93	0.995067
6582	dm3.chr3L	7,972,015 – 7,972,119	- - - - - - - -	9060	7,972,015 – 7,972,119	-	4	104	75.49	-1.93	0.74	0.966297
6583	dm3.chr3L	7,975,150 – 7,975,245	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9061	7,975,150 – 7,975,245	+	5	95	98.53	-1.44	1.01	0.909568
6584	dm3.chr3L	7,977,379 – 7,977,474	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9062	7,977,379 – 7,977,474	+	5	95	92.30	-1.43	0.98	0.912295
6585	dm3.chr3L	7,983,351 – 7,983,467	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9064	7,983,351 – 7,983,467	+	5	117	96.55	-1.94	0.95	0.936585
6587	dm3.chr3L	8,008,586 – 8,008,688	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9067	8,008,586 – 8,008,680	+	6	117	84.28	-1.60	0.92	0.941887
6588	dm3.chr3L	8,009,303 – 8,009,368	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9069	8,009,303 – 8,009,368	+	4	72	91.11	-3.42	0.79	0.992350
6589	dm3.chr3L	8,017,395 – 8,017,540	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9070	8,017,395 – 8,017,540	+	4	165	76.07	-4.39	0.64	0.999714
6589	dm3.chr3L	8,017,395 – 8,017,540		9071	8,017,395 – 8,017,540	-	4	165	76.07	-3.62	0.64	0.999049
6590	dm3.chr3L	8,029,066 – 8,029,135	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9072	8,029,066 – 8,029,135	-	6	69	81.34	-1.90	0.69	0.911606
6594	dm3.chr3L	8,053,312 – 8,053,410	FBnoncoding="tRNA;ID=FBtr0076744;Name=tRNA:CR32358-RA;Parent=FBgn0052358;Alias=CR32358-RA;Dbxref=FlyBase_Annotation_IDs:CR32358-RA;score_text=Weakly" tRNAscann="Leu_chr3L_trna44" - - "Rfam_10.0=RF00005;tRNA;AASV01042675.1/11-93\|2.9e-38" - - -	9077	8,053,312 – 8,053,410	+	10	99	89.45	-1.43	0.94	0.922476
6594	dm3.chr3L	8,053,312 – 8,053,410		9078	8,053,312 – 8,053,410	-	10	99	89.45	-1.95	0.91	0.972223
6595	dm3.chr3L	8,053,539 – 8,053,638	FBnoncoding="tRNA;ID=FBtr0076743;Name=tRNA:CR32359-RA;Parent=FBgn0052359;Alias=CR32359-RA;Dbxref=FlyBase_Annotation_IDs:CR32359-RA;score_text=Weakly" tRNAscann="Leu_chr3L_trna43" - - "Rfam_10.0=RF00005;tRNA;AASV01042675.1/11-93\|3.0e-38" - - -	9079	8,053,539 – 8,053,638	+	13	113	82.76	-1.51	0.76	0.900144
6595	dm3.chr3L	8,053,539 – 8,053,638		9080	8,053,539 – 8,053,638	-	13	113	82.76	-2.13	0.78	0.986228
6597	dm3.chr3L	8,058,719 – 8,058,792	- - - intron="intron;ID=intron_FBgn0262579:1_FBgn0262579:2;Name=Ect4-in;Parent=FBtr0304998;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AASV01042675.1/11-93\|1.0e-18" - - -	9082	8,058,719 – 8,058,792	+	11	76	80.98	-1.59	0.74	0.941195
6597	dm3.chr3L	8,058,719 – 8,058,792		9083	8,058,719 – 8,058,792	-	11	76	80.98	-2.34	0.86	0.995714
6599	dm3.chr3L	8,065,764 – 8,065,920	- - - intron="intron;ID=intron_FBgn0262579:3_FBgn0262579:7;Name=Ect4-in;Parent=FBtr0304998;parent_type=mRNA" - - - -	9087	8,065,764 – 8,065,860	-	7	113	65.88	-1.92	0.37	0.922976
6600	dm3.chr3L	8,078,274 – 8,078,336	- - - intron="intron;ID=intron_FBgn0262579:6_FBgn0262579:7;Name=Ect4-in;Parent=FBtr0304996;parent_type=mRNA" - - - -	9089	8,078,274 – 8,078,336	+	7	68	64.45	-0.77	0.58	0.923153
6607	dm3.chr3L	8,208,795 – 8,208,901	- - CDS="CDS;ID=CDS_FBgn0040832:2_381;Name=CG8012-cds;Parent=FBtr0076699;parent_type=mRNA" - - - - -	9096	8,208,795 – 8,208,901	-	11	116	75.96	-2.17	0.56	0.987615
6610	dm3.chr3L	8,214,791 – 8,214,856	- - - - - - - -	9100	8,214,791 – 8,214,856	+	7	67	71.12	-2.22	0.48	0.991769
6613	dm3.chr3L	8,241,978 – 8,242,080	- - CDS="CDS;ID=CDS_FBgn0259232:3_381;Name=CG42330-cds;Parent=FBtr0299839,FBtr0299841;parent_type=mRNA" - - - - -	9103	8,241,978 – 8,242,076	+	11	107	80.77	-1.63	0.73	0.919885
6613	dm3.chr3L	8,241,978 – 8,242,080		9105	8,241,982 – 8,242,080	+	11	105	79.42	-1.93	0.74	0.979611
6622	dm3.chr3L	8,285,258 – 8,285,349	- - - intron="intron;ID=intron_CG7201:1_CG7201:2;Name=CG7201-in;Parent=FBtr0076716;parent_type=mRNA" - - - -	9117	8,285,258 – 8,285,349	+	7	92	76.25	-2.02	0.51	0.923856
6626	dm3.chr3L	8,358,667 – 8,358,764	- - - - - - - -	9123	8,358,667 – 8,358,764	+	5	98	85.57	-1.97	0.82	0.933509
6628	dm3.chr3L	8,372,676 – 8,372,803	- - - intron="intron;ID=intron_CG32356:3_CG32356:8;Name=ImpE1-in;Parent=FBtr0076607;parent_type=mRNA" - - - -	9126	8,372,706 – 8,372,803	+	3	123	58.97	-1.94	0.51	0.976756
6630	dm3.chr3L	8,391,998 – 8,392,056	- - - - - - - -	9128	8,391,998 – 8,392,056	-	5	65	81.86	-3.14	0.72	0.995572
6632	dm3.chr3L	8,417,454 – 8,417,631	- - - - - - - -	9132	8,417,454 – 8,417,564	-	3	110	94.55	-4.36	0.77	0.997089
				9133	8,417,489 – 8,417,600	+	3	111	90.27	-3.32	0.78	0.989037
				9134	8,417,489 – 8,417,600	-	3	111	90.27	-2.78	0.75	0.935066
6634	dm3.chr3L	8,441,841 – 8,441,969	- - - intron="intron;ID=intron_FBgn0035896:2_FBgn0035896:1;Name=CG6983-in;Parent=FBtr0076659;parent_type=mRNA" - - - -	9137	8,441,841 – 8,441,936	+	6	109	60.44	-1.04	0.54	0.981847
6634	dm3.chr3L	8,441,841 – 8,441,969		9138	8,441,868 – 8,441,969	+	6	110	70.26	-1.67	0.52	0.939286
6636	dm3.chr3L	8,448,011 – 8,448,139	- - - intron="intron;ID=intron_FBgn0010825:3_FBgn0010825:4;Name=Gug-in;Parent=FBtr0076616,FBtr0076618,FBtr0076619,FBtr0305697,FBtr0305699;parent_type=mRNA" - - - -	9141	8,448,011 – 8,448,139	-	4	148	67.77	-2.31	0.60	0.992160
6638	dm3.chr3L	8,453,693 – 8,453,803	- - - intron="intron;ID=intron_FBgn0010825:3_FBgn0010825:4;Name=Gug-in;Parent=FBtr0076616,FBtr0076618,FBtr0076619,FBtr0305697,FBtr0305699;parent_type=mRNA" - - - -	9143	8,453,693 – 8,453,803	+	9	114	72.07	-1.99	0.56	0.992876
6641	dm3.chr3L	8,508,020 – 8,508,101	- - - - - - - -	9146	8,508,020 – 8,508,101	-	5	81	83.46	-2.27	0.72	0.951875
6642	dm3.chr3L	8,520,050 – 8,520,163	- - - intron="intron;ID=intron_CG6817:1_CG6817:2;Name=foi-in;Parent=FBtr0076624;parent_type=mRNA" - - - -	9147	8,520,050 – 8,520,163	+	5	120	84.55	-2.20	0.72	0.909484
6646	dm3.chr3L	8,549,010 – 8,549,061	- - - - - - - -	9151	8,549,010 – 8,549,061	+	4	58	67.28	-1.97	0.83	0.994631
6647	dm3.chr3L	8,563,331 – 8,563,427	- - - intron="intron;ID=intron_FBgn0260442:14_FBgn0260442:15;Name=rhea-in;Parent=FBtr0305211,FBtr0305212;parent_type=mRNA" - - - -	9152	8,563,331 – 8,563,427	+	7	104	61.25	-1.14	0.47	0.954106
6648	dm3.chr3L	8,564,908 – 8,564,985	FBnoncoding="pre_miRNA;ID=FBtr0304250;Name=mir-190-RM;Parent=FBgn0262387;Alias=CR42915-RM;Dbxref=FlyBase_Annotation_IDs:CR42915-RM,miRBase:MI0005808" - - intron="intron;ID=intron_FBgn0260442:17_FBgn0260442:18;Name=rhea-in;Parent=FBtr0076627,FBtr0305210;parent_type=mRNA" "Rfam_10.0=RF00672;mir-190;AAGH01005520.1/1141-1230\|8.3e-35" - - "mirBase_v16=dme-mir-190\|6.6e-39"	9153	8,564,908 – 8,564,985	+	15	78	90.57	-3.00	0.93	0.997168
6652	dm3.chr3L	8,574,340 – 8,574,436	- - - intron="intron;ID=intron_FBgn0262508:3_FBgn0262508:4;Name=CG43078-in;Parent=FBtr0304809,FBtr0304810,FBtr0304813;parent_type=mRNA" - - - -	9158	8,574,340 – 8,574,436	+	7	118	69.88	-1.62	0.46	0.908556
6654	dm3.chr3L	8,594,720 – 8,594,875	- - CDS="CDS;ID=CDS_FBgn0017579:3_343;Name=RpL14-cds;Parent=FBtr0076633;parent_type=mRNA" - - - - -	9161	8,594,720 – 8,594,835	-	14	118	75.24	-1.40	0.58	0.960826
6657	dm3.chr3L	8,609,501 – 8,609,563	- - - - - - - -	9165	8,609,501 – 8,609,563	-	7	67	78.03	-2.78	0.52	0.983284
6659	dm3.chr3L	8,631,216 – 8,631,338	- - CDS="CDS;ID=CDS_FBgn0035917:15_420;Name=Zasp66-cds;Parent=FBtr0089567,FBtr0301156;parent_type=mRNA" - - - - -	9167	8,631,216 – 8,631,311	-	12	116	68.35	-1.46	0.54	0.977672
6659	dm3.chr3L	8,631,216 – 8,631,338		9168	8,631,240 – 8,631,338	-	12	108	66.68	-1.19	0.54	0.986132
6666	dm3.chr3L	8,693,035 – 8,693,096	- - - - - - - -	9175	8,693,035 – 8,693,096	-	4	65	82.35	-1.34	0.93	0.901559
6670	dm3.chr3L	8,706,854 – 8,707,048	- - - - - - - -	9179	8,706,854 – 8,706,965	+	5	114	97.86	-2.23	0.92	0.938130
6670	dm3.chr3L	8,706,854 – 8,707,048	- - - - - - - -	9181	8,706,888 – 8,707,005	+	6	117	94.87	-1.97	0.92	0.927855
6671	dm3.chr3L	8,710,474 – 8,710,573	- - - - - - - -	9185	8,710,474 – 8,710,573	-	10	111	63.86	-1.79	0.46	0.991377
6672	dm3.chr3L	8,724,075 – 8,724,176	- - - - - - - -	9186	8,724,075 – 8,724,176	+	7	103	79.83	-2.68	0.74	0.994899
6675	dm3.chr3L	8,743,485 – 8,743,580	- - - - - - - -	9189	8,743,485 – 8,743,580	+	8	101	80.59	-2.02	0.63	0.921598
6676	dm3.chr3L	8,749,968 – 8,750,069	- - CDS="CDS;ID=CDS_FBgn0035924:1_437;Name=CG6576-cds;Parent=FBtr0076576;parent_type=mRNA" intron="intron;ID=intron_FBgn0261259:1_FBgn0261259:2;Name=Fhos-in;Parent=FBtr0302087;parent_type=mRNA" - - - -	9190	8,749,968 – 8,750,069	+	6	119	69.18	-2.40	0.44	0.983263
6676	dm3.chr3L	8,749,968 – 8,750,069		9191	8,749,968 – 8,750,069	-	6	119	69.18	-1.44	0.67	0.976312
6679	dm3.chr3L	8,777,346 – 8,777,427	- - - intron="intron;ID=intron_FBgn0261259:6_FBgn0261259:7;Name=Fhos-in;Parent=FBtr0302584,FBtr0302583,FBtr0302085,FBtr0302086,FBtr0302087;parent_type=mRNA" - - - -	9194	8,777,346 – 8,777,427	+	5	83	93.89	-2.39	0.93	0.979569
6679	dm3.chr3L	8,777,346 – 8,777,427		9195	8,777,346 – 8,777,427	-	5	83	93.89	-2.56	0.90	0.978973
6680	dm3.chr3L	8,822,589 – 8,822,691	- - - intron="intron;ID=intron_FBgn0011577:1_FBgn0011577:2;Name=dally-in;Parent=FBtr0076583,FBtr0305901;parent_type=mRNA" - - - -	9196	8,822,589 – 8,822,691	+	11	109	76.62	-2.31	0.48	0.972259
6685	dm3.chr3L	8,864,167 – 8,864,268	- - - intron="intron;ID=intron_FBgn0011577:1_FBgn0011577:2;Name=dally-in;Parent=FBtr0076583,FBtr0305901;parent_type=mRNA" - - - -	9201	8,864,167 – 8,864,268	+	4	102	75.85	-2.33	0.55	0.912513
6690	dm3.chr3L	8,894,163 – 8,894,218	- - - intron="intron;ID=intron_FBgn0035934:16_FBgn0035934:15;Name=TrpA1-in;Parent=FBtr0300208,FBtr0300209;parent_type=mRNA" - - - -	9206	8,894,163 – 8,894,218	+	5	60	67.30	-2.00	0.60	0.995368
6691	dm3.chr3L	8,905,233 – 8,905,315	- - - - - - - -	9208	8,905,233 – 8,905,315	-	8	86	66.19	-1.02	0.50	0.903526
6693	dm3.chr3L	8,924,032 – 8,924,085	- - - - - - - -	9210	8,924,032 – 8,924,085	+	7	53	74.12	-2.12	0.57	0.992745
6699	dm3.chr3L	9,031,178 – 9,031,272	- - - - - - - -	9219	9,031,178 – 9,031,272	-	10	104	84.75	-2.44	0.81	0.989531
6702	dm3.chr3L	9,057,785 – 9,057,884	- - - intron="intron;ID=intron_FBgn0000116:8_FBgn0000116:7;Name=Argk-in;Parent=FBtr0076543,FBtr0112791;parent_type=mRNA" - - - -	9222	9,057,785 – 9,057,880	-	5	102	87.49	-2.46	0.86	0.981615
6702	dm3.chr3L	9,057,785 – 9,057,884		9223	9,057,788 – 9,057,884	-	5	103	87.61	-2.10	0.84	0.937431
6707	dm3.chr3L	9,077,330 – 9,077,421	- - - intron="intron;ID=intron_FBgn0023479:7_FBgn0023479:9;Name=Tequila-in;Parent=FBtr0301910;parent_type=mRNA" - - - -	9231	9,077,330 – 9,077,421	-	3	92	54.18	-1.56	0.41	0.912997
6708	dm3.chr3L	9,079,893 – 9,080,004	- - CDS="CDS;ID=CDS_FBgn0023479:13_408;Name=Tequila-cds;Parent=FBtr0301910;parent_type=mRNA" - - - - -	9232	9,079,893 – 9,080,004	+	3	111	81.08	-2.08	0.76	0.910035
6708	dm3.chr3L	9,079,893 – 9,080,004		9233	9,079,893 – 9,080,004	-	3	111	81.08	-2.71	0.82	0.991371
6709	dm3.chr3L	9,110,633 – 9,110,786	- - - intron="intron;ID=intron_FBgn0011206:12_FBgn0011206:11;Name=bol-in;Parent=FBtr0076540,FBtr0076541,FBtr0300462;parent_type=mRNA" - - - -	9234	9,110,633 – 9,110,709	-	4	79	90.32	-2.22	0.84	0.922103
6712	dm3.chr3L	9,117,319 – 9,117,410	- - - intron="intron;ID=intron_FBgn0011206:14_FBgn0011206:12;Name=bol-in;Parent=FBtr0076540,FBtr0076541;parent_type=mRNA" - - - -	9239	9,117,319 – 9,117,410	-	8	105	68.39	-1.90	0.44	0.967111
6713	dm3.chr3L	9,127,415 – 9,127,479	- - - - - - - -	9240	9,127,415 – 9,127,479	-	5	64	99.06	-1.89	0.97	0.930206
6715	dm3.chr3L	9,146,308 – 9,146,406	- - - intron="intron;ID=intron_CG10537:7_CG10537:8;Name=Rdl-in;Parent=FBtr0076534,FBtr0076536;parent_type=mRNA" - - - -	9242	9,146,308 – 9,146,406	+	8	109	58.10	-2.82	0.84	0.999796
6715	dm3.chr3L	9,146,308 – 9,146,406		9243	9,146,308 – 9,146,406	-	8	109	58.10	-4.79	0.98	0.993579
6720	dm3.chr3L	9,182,544 – 9,182,640	- - - - - - - -	9249	9,182,544 – 9,182,640	-	7	97	84.88	-3.47	0.83	0.998742
6722	dm3.chr3L	9,186,290 – 9,186,382	- - - - - - - -	9251	9,186,290 – 9,186,382	+	5	106	75.15	-2.10	0.64	0.973224
6726	dm3.chr3L	9,212,205 – 9,212,312	- - - - - - - -	9257	9,212,205 – 9,212,312	-	6	117	78.14	-2.39	0.59	0.973284
6727	dm3.chr3L	9,213,090 – 9,213,185	- - - - - - - -	9258	9,213,090 – 9,213,185	+	10	97	89.83	-2.70	0.68	0.934866
6731	dm3.chr3L	9,244,603 – 9,244,657	- - - - - - - -	9263	9,244,603 – 9,244,657	-	6	63	88.30	-1.96	0.86	0.928383
6733	dm3.chr3L	9,286,631 – 9,286,728	- - - - - - - -	9265	9,286,631 – 9,286,728	+	8	107	76.21	-1.58	0.66	0.938858
6734	dm3.chr3L	9,287,961 – 9,288,024	- - - - - - - -	9266	9,287,961 – 9,288,024	+	5	63	86.83	-2.46	0.79	0.970811
6734	dm3.chr3L	9,287,961 – 9,288,024	- - - - - - - -	9267	9,287,961 – 9,288,024	-	5	63	86.83	-3.02	0.86	0.995996
6736	dm3.chr3L	9,291,151 – 9,291,286	- - - - - - - -	9270	9,291,182 – 9,291,286	-	6	104	69.63	-1.91	0.49	0.980628
6737	dm3.chr3L	9,294,876 – 9,294,973	- - - - - - - -	9271	9,294,876 – 9,294,966	+	11	97	91.10	-2.68	0.71	0.925799
6737	dm3.chr3L	9,294,876 – 9,294,973	- - - - - - - -	9272	9,294,876 – 9,294,966	-	11	97	91.10	-3.25	0.79	0.993186
6742	dm3.chr3L	9,342,398 – 9,342,488	- - - - - - - -	9278	9,342,398 – 9,342,488	+	8	114	71.03	-1.80	0.53	0.945399
6748	dm3.chr3L	9,403,107 – 9,403,233	- - - - - - - -	9286	9,403,107 – 9,403,204	+	6	97	78.14	-2.22	0.79	0.993266
6748	dm3.chr3L	9,403,107 – 9,403,233	- - - - - - - -	9287	9,403,107 – 9,403,204	-	6	97	78.14	-2.28	0.58	0.970526
6749	dm3.chr3L	9,405,507 – 9,405,598	- - - - - - - -	9289	9,405,507 – 9,405,598	+	12	110	67.08	-2.14	0.45	0.993197
6752	dm3.chr3L	9,470,578 – 9,470,696	- - CDS="CDS;ID=CDS_CG3654:1_322;Name=Jarid2-cds;Parent=FBtr0076468;parent_type=mRNA" - - - - -	9293	9,470,578 – 9,470,696	+	9	120	79.81	-2.93	0.63	0.995994
6752	dm3.chr3L	9,470,578 – 9,470,696		9294	9,470,578 – 9,470,696	-	9	120	79.81	-2.25	0.54	0.910621
6754	dm3.chr3L	9,490,627 – 9,490,725	- - - intron="intron;ID=intron_CG3424:8_CG3424:9;Name=path-in;Parent=FBtr0076428;parent_type=mRNA" - - - -	9296	9,490,627 – 9,490,725	+	8	107	77.57	-2.10	0.56	0.936621
6756	dm3.chr3L	9,534,181 – 9,534,271	- - - - - - - -	9300	9,534,181 – 9,534,271	+	4	91	65.60	-0.95	0.74	0.922332
6758	dm3.chr3L	9,551,285 – 9,551,416	- - - intron="intron;ID=intron_FBgn0261555:2_FBgn0261555:3;Name=CG42673-in;Parent=FBtr0302709,FBtr0302711;parent_type=mRNA" - - - -	9303	9,551,285 – 9,551,389	-	7	113	70.76	-1.86	0.45	0.943652
6758	dm3.chr3L	9,551,285 – 9,551,416		9304	9,551,314 – 9,551,416	-	5	111	70.53	-1.56	0.58	0.933818
6768	dm3.chr3L	9,640,704 – 9,640,773	- - - intron="intron;ID=intron_FBgn0053696:1_FBgn0053696:2;Name=CG33696-in;Parent=FBtr0091684;parent_type=mRNA" - - - -	9315	9,640,704 – 9,640,773	-	5	69	90.00	-1.40	0.97	0.914148
6773	dm3.chr3L	9,689,173 – 9,689,322	- - - - - - - -	9322	9,689,173 – 9,689,322	-	5	161	90.12	-3.49	0.59	0.966642
6782	dm3.chr3L	9,749,461 – 9,749,561	- - - intron="intron;ID=intron_FBgn0259163:16_FBgn0259163:15;Name=CG42268-in;Parent=FBtr0299606;parent_type=mRNA" - - - -	9331	9,749,461 – 9,749,561	+	5	100	87.19	-2.32	0.76	0.918347
6783	dm3.chr3L	9,755,281 – 9,755,333	- - - - - - - -	9332	9,755,281 – 9,755,333	+	9	64	65.11	-0.95	0.75	0.983590
6784	dm3.chr3L	9,786,873 – 9,786,978	- - CDS="CDS;ID=CDS_CG14168:3_313;Name=CG14168-cds;Parent=FBtr0076374;parent_type=mRNA" - - - - -	9334	9,786,873 – 9,786,978	-	6	111	77.16	-1.72	0.67	0.930793
6787	dm3.chr3L	9,826,549 – 9,826,645	- - - - - - - -	9337	9,826,549 – 9,826,645	-	8	104	85.13	-4.49	0.67	0.999419
6790	dm3.chr3L	9,841,483 – 9,841,625	- - - intron="intron;ID=intron_CG6721:1_CG6721:2;Name=Gap1-in;Parent=FBtr0076367,FBtr0076368;parent_type=mRNA" - - - -	9340	9,841,483 – 9,841,586	-	7	119	53.60	-1.07	0.44	0.964610
6790	dm3.chr3L	9,841,483 – 9,841,625		9341	9,841,515 – 9,841,625	-	7	113	64.43	-1.54	0.45	0.954428
6792	dm3.chr3L	9,866,536 – 9,866,633	- - - - - - - -	9343	9,866,536 – 9,866,633	-	7	107	71.61	-1.80	0.63	0.984936
6793	dm3.chr3L	9,868,495 – 9,868,655	- - - - - - - -	9344	9,868,495 – 9,868,586	+	4	91	82.42	-2.44	0.66	0.939828
6794	dm3.chr3L	9,875,173 – 9,875,264	- - - intron="intron;ID=intron_FBgn0085411:2_FBgn0085411:3;Name=CG34382-in;Parent=FBtr0112620;parent_type=mRNA" - - - -	9346	9,875,173 – 9,875,264	-	9	104	59.93	-1.45	0.45	0.985027
6796	dm3.chr3L	9,882,337 – 9,882,437	- - - - - - - -	9348	9,882,337 – 9,882,437	+	10	120	70.66	-2.00	0.61	0.993551
6805	dm3.chr3L	9,913,917 – 9,914,013	- - - - - - - -	9357	9,913,917 – 9,914,007	-	6	92	66.21	-2.16	0.55	0.997664
6805	dm3.chr3L	9,913,917 – 9,914,013	- - - - - - - -	9358	9,913,917 – 9,914,013	-	6	98	66.45	-2.28	0.50	0.996806
6809	dm3.chr3L	9,987,422 – 9,987,616	- - - intron="intron;ID=intron_CG14162:1_CG14162:2;Name=dpr6-in;Parent=FBtr0076353;parent_type=mRNA" - - - -	9364	9,987,502 – 9,987,613	-	4	116	89.20	-2.45	0.80	0.944041
6809	dm3.chr3L	9,987,422 – 9,987,616		9365	9,987,505 – 9,987,616	-	4	116	89.20	-2.16	0.83	0.916807
6810	dm3.chr3L	9,998,983 – 9,999,071	- - - intron="intron;ID=intron_CG14162:2_CG14162:3;Name=dpr6-in;Parent=FBtr0076353;parent_type=mRNA" - - - -	9366	9,998,983 – 9,999,071	-	3	88	80.23	-2.15	0.82	0.968112
6812	dm3.chr3L	10,003,201 – 10,003,335	- - - intron="intron;ID=intron_CG14162:2_CG14162:3;Name=dpr6-in;Parent=FBtr0076353;parent_type=mRNA" - - - -	9368	10,003,201 – 10,003,316	+	12	120	94.59	-2.57	0.80	0.927131
6815	dm3.chr3L	10,035,591 – 10,035,688	- - - - - - - -	9372	10,035,591 – 10,035,688	+	11	118	86.72	-1.99	0.89	0.971502
6817	dm3.chr3L	10,049,198 – 10,049,252	- - - - - - - -	9374	10,049,198 – 10,049,252	+	5	54	97.41	-1.38	1.01	0.906238
6818	dm3.chr3L	10,071,781 – 10,071,935	- - - - - - - -	9375	10,071,781 – 10,071,935	+	5	154	64.79	-1.51	0.46	0.939004
6818	dm3.chr3L	10,071,781 – 10,071,935	- - - - - - - -	9376	10,071,781 – 10,071,935	-	5	154	64.79	-1.41	0.47	0.929962
6822	dm3.chr3L	10,096,852 – 10,096,949	- - - - - - - -	9380	10,096,852 – 10,096,949	+	12	122	81.67	-2.20	0.64	0.936339
6828	dm3.chr3L	10,136,431 – 10,136,587	- - - - - - - -	9387	10,136,431 – 10,136,529	+	8	98	66.43	-1.86	0.37	0.939104
				9388	10,136,468 – 10,136,569	+	9	103	86.01	-2.42	0.70	0.936006
				9389	10,136,487 – 10,136,587	+	9	104	88.90	-2.65	0.69	0.924794
6831	dm3.chr3L	10,169,704 – 10,169,799	- - - - - - - -	9392	10,169,704 – 10,169,799	-	8	99	77.98	-1.05	0.90	0.923120
6834	dm3.chr3L	10,176,223 – 10,176,276	- - - intron="intron;ID=intron_CG32057:10_CG32057:11;Name=dpr10-in;Parent=FBtr0076308;parent_type=mRNA" - - - -	9395	10,176,223 – 10,176,276	+	6	54	82.16	-2.46	0.74	0.986491
6838	dm3.chr3L	10,185,945 – 10,186,017	- - - intron="intron;ID=intron_FBgn0000451:5_FBgn0000451:3;Name=ect-in;Parent=FBtr0076305,FBtr0076307;parent_type=mRNA" - - - -	9399	10,185,945 – 10,186,017	+	8	72	83.43	-1.88	0.74	0.938016
6841	dm3.chr3L	10,209,906 – 10,210,023	- - - - - - - -	9404	10,209,906 – 10,210,010	-	12	119	78.23	-2.09	0.61	0.974517
6849	dm3.chr3L	10,272,084 – 10,272,174	- - - - - - - -	9417	10,272,084 – 10,272,174	-	12	120	84.68	-2.49	0.82	0.986833
6850	dm3.chr3L	10,275,519 – 10,275,613	- - - - - - - -	9418	10,275,519 – 10,275,613	-	7	94	78.41	-2.87	0.71	0.998596
6851	dm3.chr3L	10,280,509 – 10,280,601	- - - - - - - -	9419	10,280,509 – 10,280,601	-	12	107	82.02	-2.03	0.70	0.963089
6852	dm3.chr3L	10,282,378 – 10,282,476	- - - - - - - -	9421	10,282,378 – 10,282,476	-	3	98	98.64	-1.64	1.00	0.930243
6853	dm3.chr3L	10,283,399 – 10,283,507	- - - - - - - -	9424	10,283,405 – 10,283,507	+	11	114	82.03	-3.29	0.53	0.995187
6853	dm3.chr3L	10,283,399 – 10,283,507	- - - - - - - -	9425	10,283,405 – 10,283,507	-	11	114	82.03	-3.02	0.45	0.967760
6856	dm3.chr3L	10,287,410 – 10,287,500	- - - - - - - -	9429	10,287,410 – 10,287,500	+	10	115	78.51	-2.31	0.70	0.992946
6856	dm3.chr3L	10,287,410 – 10,287,500	- - - - - - - -	9430	10,287,410 – 10,287,500	-	10	115	78.51	-1.50	0.70	0.915692
6858	dm3.chr3L	10,299,580 – 10,299,670	- - - - - - - -	9432	10,299,580 – 10,299,670	+	6	101	83.26	-2.32	0.76	0.973621
6861	dm3.chr3L	10,310,284 – 10,310,417	- - - - - - - -	9439	10,310,315 – 10,310,417	-	7	105	76.75	-2.48	0.53	0.986492
6863	dm3.chr3L	10,312,886 – 10,312,987	FBnoncoding="pre_miRNA;ID=FBtr0304225;Name=mir-276b-RM;Parent=FBgn0262381;Alias=CR42904-RM;Dbxref=FlyBase_Annotation_IDs:CR42904-RM,miRBase:MI0000375" - - - "Rfam_10.0=RF00637;mir-276;AE014296.4/10312890-10312983\|3.4e-47" "Noncode_2.0=n178694_u177792_NW_045815_miRNA_Anopheles\|3.3e-07" "unique_Noncode_2.0=u177792_miRNA_Anopheles\|2.8e-07" "mirBase_v16=dme-mir-276b\|1.1e-50"	9441	10,312,886 – 10,312,987	+	14	110	82.49	-5.14	0.81	0.999592
6863	dm3.chr3L	10,312,886 – 10,312,987		9442	10,312,886 – 10,312,987	-	14	110	82.49	-3.59	0.76	0.999341
6865	dm3.chr3L	10,335,217 – 10,335,280	- - - - - - - -	9444	10,335,217 – 10,335,280	+	7	72	53.23	-0.88	0.43	0.951774
6869	dm3.chr3L	10,358,332 – 10,358,406	FBnoncoding="pre_miRNA;ID=FBtr0304431;Name=mir-276a-RM;Parent=FBgn0262439;Alias=CR43001-RM;Dbxref=FlyBase_Annotation_IDs:CR43001-RM,miRBase:MI0000359" - - - "Rfam_10.0=RF00637;mir-276;AANI01017424.1/110847-110939\|1.1e-27" "Noncode_2.0=n178694_u177792_NW_045815_miRNA_Anopheles\|2.3e-10" "unique_Noncode_2.0=u177792_miRNA_Anopheles\|2.0e-10" "mirBase_v16=dya-mir-276a\|3.9e-37"	9449	10,358,332 – 10,358,406	+	15	89	85.48	-6.44	0.95	0.994048
6869	dm3.chr3L	10,358,332 – 10,358,406		9450	10,358,332 – 10,358,406	-	15	89	85.48	-5.42	0.94	0.998488
6870	dm3.chr3L	10,361,477 – 10,361,609	- - - - - - - -	9451	10,361,477 – 10,361,571	+	4	100	83.51	-2.82	0.63	0.956105
6870	dm3.chr3L	10,361,477 – 10,361,609	- - - - - - - -	9452	10,361,507 – 10,361,609	+	4	103	86.44	-3.46	0.69	0.993123
6872	dm3.chr3L	10,374,120 – 10,374,274	- - - - - - - -	9456	10,374,159 – 10,374,274	+	9	116	80.63	-2.39	0.48	0.900381
6872	dm3.chr3L	10,374,120 – 10,374,274	- - - - - - - -	9457	10,374,159 – 10,374,274	-	9	116	80.63	-3.16	0.48	0.991846
6873	dm3.chr3L	10,390,173 – 10,390,299	- - - - - - - -	9458	10,390,173 – 10,390,267	+	9	108	79.15	-2.05	0.70	0.965870
6873	dm3.chr3L	10,390,173 – 10,390,299	- - - - - - - -	9459	10,390,173 – 10,390,267	-	9	108	79.15	-2.52	0.60	0.979205
6883	dm3.chr3L	10,475,910 – 10,476,028	- - - intron="intron;ID=intron_FBgn0052062:1_FBgn0052062:2;Name=A2bp1-in;Parent=FBtr0305093,FBtr0305097;parent_type=mRNA" - - - -	9474	10,475,910 – 10,476,000	+	11	99	71.09	-0.87	0.64	0.917819
6886	dm3.chr3L	10,501,292 – 10,501,390	- - - intron="intron;ID=intron_FBgn0052062:2_FBgn0052062:5;Name=A2bp1-in;Parent=FBtr0305093,FBtr0305097;parent_type=mRNA" - - - -	9480	10,501,292 – 10,501,390	+	7	109	63.04	-1.64	0.35	0.902125
6887	dm3.chr3L	10,508,927 – 10,509,006	- - - intron="intron;ID=intron_FBgn0052062:2_FBgn0052062:5;Name=A2bp1-in;Parent=FBtr0305093,FBtr0305097;parent_type=mRNA" - - - -	9481	10,508,927 – 10,509,006	+	5	87	79.69	-2.92	0.74	0.996701
6890	dm3.chr3L	10,544,097 – 10,544,209	- - - intron="intron;ID=intron_FBgn0052062:4_FBgn0052062:5;Name=A2bp1-in;Parent=FBtr0113418,FBtr0113419,FBtr0305094,FBtr0305095,FBtr0305096;parent_type=mRNA" - - - -	9485	10,544,097 – 10,544,209	-	10	118	82.41	-1.86	0.77	0.940799
6892	dm3.chr3L	10,571,722 – 10,571,813	- - - intron="intron;ID=intron_FBgn0052062:11_FBgn0052062:12;Name=A2bp1-in;Parent=FBtr0305093,FBtr0305094,FBtr0305096;parent_type=mRNA" - - - -	9488	10,571,722 – 10,571,813	-	12	105	62.10	-0.72	0.50	0.910585
6899	dm3.chr3L	10,664,414 – 10,664,547	- - - intron="intron;ID=intron_CG32067:1_CG32067:2;Name=simj-in;Parent=FBtr0076263,FBtr0076264;parent_type=mRNA" - - - -	9498	10,664,414 – 10,664,471	-	3	57	97.65	-2.27	1.01	0.988161
6900	dm3.chr3L	10,672,791 – 10,672,851	- - - intron="intron;ID=intron_CG32067:1_CG32067:2;Name=simj-in;Parent=FBtr0076263,FBtr0076264;parent_type=mRNA" - - - -	9500	10,672,791 – 10,672,851	+	6	65	81.10	-1.70	0.80	0.940617
6903	dm3.chr3L	10,678,146 – 10,678,239	- - CDS="CDS;ID=CDS_CG32067:2_295;Name=simj-cds;Parent=FBtr0076262,FBtr0076263,FBtr0076264;parent_type=mRNA" - - - - -	9504	10,678,146 – 10,678,239	+	13	120	77.22	-2.01	0.62	0.973909
6903	dm3.chr3L	10,678,146 – 10,678,239		9505	10,678,146 – 10,678,239	-	13	120	77.22	-2.52	0.56	0.990342
6906	dm3.chr3L	10,695,994 – 10,696,074	- - - - - - - -	9508	10,695,994 – 10,696,074	-	6	80	72.75	-2.01	0.57	0.987572
6908	dm3.chr3L	10,697,592 – 10,697,689	- - - - - - - -	9510	10,697,592 – 10,697,689	+	5	107	83.12	-3.11	0.61	0.986611
6909	dm3.chr3L	10,698,906 – 10,699,007	- - - - - - - -	9512	10,698,906 – 10,699,007	+	7	114	64.78	-2.14	0.39	0.985454
6912	dm3.chr3L	10,733,774 – 10,733,944	- - - - - - - -	9516	10,733,774 – 10,733,851	-	7	77	82.47	-2.20	0.64	0.938616
6912	dm3.chr3L	10,733,774 – 10,733,944	- - - - - - - -	9517	10,733,851 – 10,733,944	-	5	107	67.84	-1.60	0.59	0.957347
6913	dm3.chr3L	10,737,056 – 10,737,136	- - - - - - - -	9518	10,737,056 – 10,737,136	+	5	95	65.80	-2.29	0.69	0.998397
6915	dm3.chr3L	10,744,292 – 10,744,388	- - - - - - - -	9520	10,744,292 – 10,744,388	-	9	102	90.31	-2.40	0.74	0.904152
6916	dm3.chr3L	10,744,427 – 10,744,521	- - - - - - - -	9521	10,744,427 – 10,744,521	+	11	97	96.23	-2.41	0.96	0.984991
6916	dm3.chr3L	10,744,427 – 10,744,521	- - - - - - - -	9522	10,744,427 – 10,744,521	-	11	97	96.23	-2.00	0.97	0.965640
6917	dm3.chr3L	10,744,852 – 10,745,033	- - - - - - - -	9523	10,744,852 – 10,744,958	-	5	113	66.88	-2.69	0.35	0.979085
				9524	10,744,887 – 10,744,998	+	4	111	82.43	-2.64	0.62	0.946908
				9525	10,744,887 – 10,744,998	-	4	111	82.43	-2.99	0.61	0.980666
6919	dm3.chr3L	10,797,323 – 10,797,428	- - - - - - - -	9528	10,797,323 – 10,797,428	-	5	106	65.09	-1.63	0.54	0.989507
6922	dm3.chr3L	10,829,420 – 10,829,483	- - - intron="intron;ID=intron_FBgn0026160:1_FBgn0026160:5;Name=tna-in;Parent=FBtr0112923;parent_type=mRNA" - - - -	9531	10,829,420 – 10,829,483	+	11	63	93.19	-1.89	0.90	0.923887
6927	dm3.chr3L	10,845,621 – 10,845,704	- - - intron="intron;ID=intron_FBgn0026160:1_FBgn0026160:5;Name=tna-in;Parent=FBtr0112923;parent_type=mRNA" - - - -	9536	10,845,621 – 10,845,704	+	5	83	99.04	-2.34	0.95	0.966192
6934	dm3.chr3L	10,891,817 – 10,891,944	- - - - - - - -	9544	10,891,842 – 10,891,944	-	7	109	69.25	-2.55	0.31	0.952962
6936	dm3.chr3L	10,906,309 – 10,906,421	- - - - - - - -	9546	10,906,309 – 10,906,403	+	9	108	76.28	-2.53	0.69	0.994706
				9547	10,906,309 – 10,906,403	-	9	108	76.28	-3.38	0.63	0.999055
				9548	10,906,322 – 10,906,421	+	11	120	75.00	-2.41	0.51	0.980371
				9549	10,906,322 – 10,906,421	-	11	120	75.00	-2.37	0.45	0.942757
6938	dm3.chr3L	10,923,485 – 10,923,539	- - - - - - - -	9551	10,923,485 – 10,923,539	+	7	60	90.94	-1.95	0.86	0.901914
6940	dm3.chr3L	10,929,726 – 10,929,818	- - - - - - - -	9553	10,929,726 – 10,929,818	+	9	103	83.98	-2.46	0.71	0.972878
6941	dm3.chr3L	10,955,495 – 10,955,617	- - - - - - - -	9555	10,955,495 – 10,955,599	+	11	115	81.52	-2.16	0.72	0.977244
6946	dm3.chr3L	10,988,341 – 10,988,434	- - - intron="intron;ID=intron_CG12296:2_CG12296:3;Name=klu-in;Parent=FBtr0076247;parent_type=mRNA" - - - -	9563	10,988,341 – 10,988,434	-	6	110	71.86	-1.48	0.60	0.907043
6947	dm3.chr3L	11,010,653 – 11,010,759	- - - - - - - -	9565	11,010,653 – 11,010,748	-	5	106	78.05	-4.09	0.54	0.999277
6947	dm3.chr3L	11,010,653 – 11,010,759	- - - - - - - -	9566	11,010,657 – 11,010,759	-	8	110	61.48	-3.65	0.09	0.960219
6950	dm3.chr3L	11,032,901 – 11,033,042	- - - intron="intron;ID=intron_FBgn0036115:6_FBgn0036115:4;Name=CG6327-in;Parent=FBtr0076246,FBtr0076243,FBtr0076244,FBtr0306352,FBtr0306353;parent_type=mRNA" - - - -	9569	11,032,901 – 11,033,010	-	8	110	73.51	-1.36	0.58	0.907321
6953	dm3.chr3L	11,084,743 – 11,084,806	- - - - - - - -	9573	11,084,743 – 11,084,806	+	7	68	64.23	-1.12	0.47	0.913468
6953	dm3.chr3L	11,084,743 – 11,084,806	- - - - - - - -	9574	11,084,743 – 11,084,806	-	7	68	64.23	-1.13	0.69	0.993104
6971	dm3.chr3L	11,204,043 – 11,204,111	- - CDS="CDS;ID=CDS_FBgn0064766:1_425;Name=CG7600-cds;Parent=FBtr0076165;parent_type=mRNA" - - - - -	9594	11,204,043 – 11,204,111	-	7	86	59.05	-1.61	0.43	0.978294
6974	dm3.chr3L	11,230,317 – 11,230,414	- - - - - - - -	9599	11,230,317 – 11,230,414	+	11	113	88.92	-3.26	0.89	0.997603
6976	dm3.chr3L	11,242,062 – 11,242,162	- - - - - - - -	9602	11,242,062 – 11,242,162	+	4	100	63.57	-2.36	0.35	0.914909
6976	dm3.chr3L	11,242,062 – 11,242,162	- - - - - - - -	9603	11,242,062 – 11,242,162	-	4	100	63.57	-2.10	0.53	0.990345
6977	dm3.chr3L	11,244,871 – 11,244,942	- - - - - - - -	9604	11,244,871 – 11,244,942	-	5	74	94.94	-2.23	0.89	0.934052
6982	dm3.chr3L	11,269,185 – 11,269,275	- - - - - - - -	9610	11,269,185 – 11,269,275	+	4	97	62.23	-1.36	0.57	0.956554
6983	dm3.chr3L	11,291,098 – 11,291,161	- - - - - - - -	9611	11,291,098 – 11,291,161	-	5	63	96.98	-2.71	0.95	0.989162
6987	dm3.chr3L	11,297,475 – 11,297,566	- - - - - - - -	9616	11,297,475 – 11,297,566	-	8	95	86.45	-1.99	0.83	0.952750
6988	dm3.chr3L	11,302,143 – 11,302,268	- - - - - - - -	9619	11,302,175 – 11,302,268	-	6	99	70.97	-1.55	0.52	0.907926
6994	dm3.chr3L	11,347,293 – 11,347,379	- - - - - - - -	9626	11,347,293 – 11,347,379	-	12	100	81.96	-3.18	0.50	0.991476
6997	dm3.chr3L	11,362,266 – 11,362,375	- - - - - - - -	9631	11,362,284 – 11,362,375	-	7	94	81.52	-2.52	0.57	0.941298
6999	dm3.chr3L	11,386,051 – 11,386,102	- - - - - - - -	9633	11,386,051 – 11,386,102	-	3	54	95.06	-2.04	0.96	0.960392
7002	dm3.chr3L	11,414,531 – 11,414,621	- - - - - - - -	9636	11,414,531 – 11,414,621	+	5	101	76.58	-2.31	0.61	0.971930
7003	dm3.chr3L	11,414,995 – 11,415,071	- - - - - - - -	9637	11,414,995 – 11,415,071	+	5	84	87.12	-2.40	0.74	0.923365
7003	dm3.chr3L	11,414,995 – 11,415,071	- - - - - - - -	9638	11,414,995 – 11,415,071	-	5	84	87.12	-2.45	0.79	0.962043
7005	dm3.chr3L	11,421,581 – 11,421,764	- - - - - - - -	9640	11,421,581 – 11,421,764	+	4	184	83.15	-2.61	0.75	0.981687
7005	dm3.chr3L	11,421,581 – 11,421,764	- - - - - - - -	9641	11,421,581 – 11,421,764	-	4	184	83.15	-2.52	0.65	0.932193
7006	dm3.chr3L	11,422,835 – 11,422,968	- - - - - - - -	9642	11,422,835 – 11,422,936	+	5	113	83.14	-2.27	0.75	0.950147
7014	dm3.chr3L	11,507,327 – 11,507,469	- - - intron="intron;ID=intron_FBgn0036168:1_FBgn0036168:2;Name=CG7512-in;Parent=FBtr0302797;parent_type=mRNA" - - - -	9653	11,507,327 – 11,507,431	-	4	105	82.02	-2.70	0.71	0.982961
7014	dm3.chr3L	11,507,327 – 11,507,469		9654	11,507,355 – 11,507,469	-	4	117	73.19	-1.76	0.63	0.919001
7017	dm3.chr3L	11,527,204 – 11,527,331	- - - intron="intron;ID=intron_CG11711:7_CG11711:8;Name=Mob2-in;Parent=FBtr0089333;parent_type=mRNA" - - - -	9658	11,527,204 – 11,527,313	+	6	111	60.88	-2.68	0.25	0.982184
7017	dm3.chr3L	11,527,204 – 11,527,331		9659	11,527,225 – 11,527,331	+	5	109	76.83	-2.55	0.46	0.903238
7018	dm3.chr3L	11,528,915 – 11,528,972	- - - - - - - -	9660	11,528,915 – 11,528,972	+	3	57	92.94	-2.50	0.89	0.969451
7024	dm3.chr3L	11,565,270 – 11,565,367	- - - intron="intron;ID=intron_FBgn0053267:1_FBgn0053267:2;Name=CG33267-in;Parent=FBtr0305649;parent_type=mRNA" - - - -	9668	11,565,270 – 11,565,367	+	3	98	56.90	-2.26	0.64	0.999096
7024	dm3.chr3L	11,565,270 – 11,565,367		9669	11,565,270 – 11,565,367	-	3	98	56.90	-2.03	0.53	0.995408
7026	dm3.chr3L	11,572,876 – 11,572,994	- - - - - - - -	9672	11,572,876 – 11,572,994	+	5	119	69.09	-1.55	0.51	0.906715
7028	dm3.chr3L	11,591,330 – 11,591,422	- - - intron="intron;ID=intron_FBgn0036179:1_FBgn0036179:2;Name=CG7368-in;Parent=FBtr0110884;parent_type=mRNA" - - - -	9677	11,591,330 – 11,591,422	-	6	94	67.73	-2.07	0.44	0.975417
7029	dm3.chr3L	11,594,245 – 11,594,352	- - - intron="intron;ID=intron_FBgn0036179:1_FBgn0036179:2;Name=CG7368-in;Parent=FBtr0110884;parent_type=mRNA" - - - -	9678	11,594,245 – 11,594,352	+	6	120	75.39	-2.03	0.56	0.947619
7029	dm3.chr3L	11,594,245 – 11,594,352		9679	11,594,245 – 11,594,352	-	6	120	75.39	-2.25	0.52	0.957906
7032	dm3.chr3L	11,627,357 – 11,627,506	- - - intron="intron;ID=intron_CG32091:1_CG32091:2;Name=CG32091-in;Parent=FBtr0076106;parent_type=mRNA" - - - -	9682	11,627,357 – 11,627,474	+	5	117	83.58	-3.28	0.65	0.993741
				9684	11,627,397 – 11,627,506	+	5	117	77.51	-2.40	0.58	0.967661
				9685	11,627,397 – 11,627,506	-	5	117	77.51	-3.06	0.63	0.997247
7034	dm3.chr3L	11,650,895 – 11,650,992	- - - intron="intron;ID=intron_CG32085:4_CG32085:5;Name=CG32085-in;Parent=FBtr0076133;parent_type=mRNA" - - - -	9688	11,650,895 – 11,650,992	-	6	110	75.93	-2.32	0.58	0.972018
7041	dm3.chr3L	11,669,352 – 11,669,445	- - - intron="intron;ID=intron_CG32085:1_CG32085:2;Name=CG32085-in;Parent=FBtr0076133;parent_type=mRNA" - - - -	9699	11,669,352 – 11,669,445	+	5	104	78.13	-2.19	0.74	0.979195
7045	dm3.chr3L	11,675,060 – 11,675,292	- - - - - - - -	9704	11,675,099 – 11,675,213	+	6	116	71.69	-1.33	0.63	0.956651
7049	dm3.chr3L	11,737,968 – 11,738,063	- - - intron="intron;ID=intron_FBgn0036202:9_FBgn0036202:8;Name=CG6024-in;Parent=FBtr0113164,FBtr0113165,FBtr0113166;parent_type=mRNA" - - - -	9709	11,737,968 – 11,738,063	+	6	103	60.15	-2.13	0.40	0.996005
7049	dm3.chr3L	11,737,968 – 11,738,063		9710	11,737,968 – 11,738,063	-	6	103	60.15	-1.32	0.39	0.910187
7050	dm3.chr3L	11,746,139 – 11,746,206	- - - intron="intron;ID=intron_FBgn0036202:9_FBgn0036202:8;Name=CG6024-in;Parent=FBtr0113164,FBtr0113165,FBtr0113166;parent_type=mRNA" - - - -	9711	11,746,139 – 11,746,206	-	10	72	73.71	-2.55	0.38	0.981263
7051	dm3.chr3L	11,748,237 – 11,748,319	- - - intron="intron;ID=intron_FBgn0036202:9_FBgn0036202:8;Name=CG6024-in;Parent=FBtr0113164,FBtr0113165,FBtr0113166;parent_type=mRNA" - - - -	9712	11,748,237 – 11,748,319	+	6	90	76.46	-2.21	0.50	0.903306
7052	dm3.chr3L	11,766,096 – 11,766,210	FBnoncoding="pre_miRNA;ID=FBtr0304290;Name=mir-314-RM;Parent=FBgn0262396;Alias=CR42933-RM;Dbxref=FlyBase_Annotation_IDs:CR42933-RM,miRBase:MI0000426" - - - "Rfam_10.0=RF00807;mir-314;AAFS01000446.1/64778-64866\|4.9e-28" - - "mirBase_v16=dme-mir-314\|1.8e-46"	9713	11,766,096 – 11,766,210	+	12	119	86.20	-2.61	0.66	0.973879
7055	dm3.chr3L	11,808,168 – 11,808,276	- - - - - - - -	9717	11,808,168 – 11,808,276	+	3	120	63.22	-1.42	0.62	0.919553
7056	dm3.chr3L	11,815,135 – 11,815,190	- - - - - - - -	9720	11,815,135 – 11,815,190	-	3	58	91.95	-1.51	1.00	0.941928
7057	dm3.chr3L	11,816,488 – 11,816,585	- - - intron="intron;ID=intron_FBgn0036213:3_FBgn0036213:5;Name=RpL10Ab-in;Parent=FBtr0076032,FBtr0304648;parent_type=mRNA" - - - -	9721	11,816,488 – 11,816,585	+	13	108	58.99	-1.22	0.38	0.957621
7059	dm3.chr3L	11,857,600 – 11,857,705	- - - - - - - -	9723	11,857,600 – 11,857,705	+	4	131	77.54	-2.33	0.63	0.949689
7059	dm3.chr3L	11,857,600 – 11,857,705	- - - - - - - -	9724	11,857,600 – 11,857,705	-	4	131	77.54	-4.40	0.64	0.999645
7060	dm3.chr3L	11,860,101 – 11,860,194	- - - - - - - -	9725	11,860,101 – 11,860,194	-	7	97	60.06	-1.22	0.39	0.920247
7062	dm3.chr3L	11,872,478 – 11,872,611	- - - intron="intron;ID=intron_FBgn0036218:2_FBgn0036218:5;Name=CG14128-in;Parent=FBtr0300722,FBtr0300724;parent_type=mRNA" - - - -	9728	11,872,517 – 11,872,611	+	6	120	70.11	-1.88	0.48	0.924468
7064	dm3.chr3L	11,878,849 – 11,878,961	- - - - - - - -	9730	11,878,849 – 11,878,961	+	5	116	74.33	-1.58	0.71	0.942389
7068	dm3.chr3L	11,899,019 – 11,899,075	- - - - - - - -	9734	11,899,019 – 11,899,075	+	5	56	88.57	-2.65	0.82	0.980068
7069	dm3.chr3L	11,899,437 – 11,899,552	- - - - - - - -	9736	11,899,437 – 11,899,545	-	12	120	74.45	-2.55	0.42	0.981744
7069	dm3.chr3L	11,899,437 – 11,899,552	- - - - - - - -	9737	11,899,444 – 11,899,552	-	12	117	76.57	-2.73	0.43	0.982770
7072	dm3.chr3L	11,921,680 – 11,921,771	- - - - - - - -	9740	11,921,680 – 11,921,771	+	5	95	78.78	-1.61	0.78	0.913862
7073	dm3.chr3L	11,932,855 – 11,932,950	- - - - - - - -	9742	11,932,855 – 11,932,950	-	9	115	64.22	-1.49	0.45	0.971078
7074	dm3.chr3L	11,939,171 – 11,939,307	FBnoncoding="pre_miRNA;ID=FBtr0304307;Name=mir-285-RM;Parent=FBgn0262401;Alias=CR42941-RM;Dbxref=FlyBase_Annotation_IDs:CR42941-RM,miRBase:MI0000377" - - - - - - "mirBase_v16=dme-mir-285\|9.5e-52"	9744	11,939,171 – 11,939,276	-	11	118	77.99	-2.10	0.72	0.990654
				9745	11,939,209 – 11,939,307	+	11	112	77.58	-2.19	0.75	0.994000
				9746	11,939,209 – 11,939,307	-	11	112	77.58	-3.65	0.82	0.999522
7075	dm3.chr3L	11,969,309 – 11,969,419	- - CDS="CDS;ID=CDS_CG6947:2_295;Name=CG6947-cds;Parent=FBtr0076045;parent_type=mRNA" - - - - -	9747	11,969,309 – 11,969,419	+	12	117	70.60	-1.36	0.53	0.956923
7076	dm3.chr3L	11,997,158 – 11,997,267	- - - intron="intron;ID=intron_CG6928:1_CG6928:2;Name=CG6928-in;Parent=FBtr0076049;parent_type=mRNA" - - - -	9748	11,997,158 – 11,997,267	-	4	109	85.46	-2.43	0.79	0.962051
7077	dm3.chr3L	12,006,830 – 12,006,976	- - - intron="intron;ID=intron_CG32096:4_CG32096:5;Name=rols-in;Parent=FBtr0076053,FBtr0076054,FBtr0076055,FBtr0076056,FBtr0076057;parent_type=mRNA" - - - -	9749	12,006,830 – 12,006,936	-	5	107	92.88	-2.37	0.84	0.933166
7078	dm3.chr3L	12,007,832 – 12,007,931	- - - intron="intron;ID=intron_CG32096:4_CG32096:5;Name=rols-in;Parent=FBtr0076053,FBtr0076054,FBtr0076055,FBtr0076056,FBtr0076057;parent_type=mRNA" - - - -	9751	12,007,832 – 12,007,931	+	6	115	77.23	-3.60	0.70	0.999390
7078	dm3.chr3L	12,007,832 – 12,007,931		9752	12,007,832 – 12,007,931	-	6	115	77.23	-3.41	0.83	0.999167
7081	dm3.chr3L	12,023,496 – 12,023,609	- - - intron="intron;ID=intron_CG32096:9_CG32096:3;Name=rols-in;Parent=FBtr0076054;parent_type=mRNA" - - - -	9755	12,023,496 – 12,023,609	+	6	114	72.74	-2.61	0.44	0.987952
7082	dm3.chr3L	12,024,262 – 12,024,355	- - - intron="intron;ID=intron_CG32096:9_CG32096:3;Name=rols-in;Parent=FBtr0076054;parent_type=mRNA" - - - -	9757	12,024,262 – 12,024,355	-	5	99	81.62	-2.16	0.67	0.909657
7089	dm3.chr3L	12,086,224 – 12,086,319	- - - - - - - -	9764	12,086,224 – 12,086,319	-	4	95	92.73	-2.39	0.87	0.953286
7091	dm3.chr3L	12,165,125 – 12,165,248	- - - intron="intron;ID=intron_CG5638:1_CG5638:2;Name=Rh7-in;Parent=FBtr0076020;parent_type=mRNA" - - - -	9767	12,165,125 – 12,165,217	+	4	92	88.91	-2.33	0.85	0.960080
				9769	12,165,153 – 12,165,248	+	4	95	91.10	-2.89	0.80	0.976603
				9770	12,165,153 – 12,165,248	-	4	95	91.10	-2.55	0.81	0.946907
7094	dm3.chr3L	12,170,384 – 12,170,434	- - - - - - - -	9773	12,170,384 – 12,170,434	-	4	50	91.67	-2.51	0.94	0.989133
7096	dm3.chr3L	12,202,338 – 12,202,467	- - - intron="intron;ID=intron_FBgn0260941:3_FBgn0260941:1;Name=app-in;Parent=FBtr0301056,FBtr0301057,FBtr0304660,FBtr0304662;parent_type=mRNA" - - - -	9776	12,202,376 – 12,202,467	-	7	111	67.10	-1.53	0.55	0.942261
7098	dm3.chr3L	12,208,062 – 12,208,120	- - - intron="intron;ID=intron_FBgn0260941:10_FBgn0260941:9;Name=app-in;Parent=FBtr0304662;parent_type=mRNA" - - - -	9778	12,208,062 – 12,208,120	+	3	60	74.12	-1.94	0.89	0.981631
7100	dm3.chr3L	12,215,953 – 12,216,043	- - - intron="intron;ID=intron_FBgn0260941:14_FBgn0260941:13;Name=app-in;Parent=FBtr0301052,FBtr0301054,FBtr0301056;parent_type=mRNA" - - - -	9781	12,215,953 – 12,216,043	-	9	100	67.37	-0.84	0.56	0.924073
7103	dm3.chr3L	12,237,088 – 12,237,149	- - - intron="intron;ID=intron_FBgn0260941:15_FBgn0260941:14;Name=app-in;Parent=FBtr0301052,FBtr0301054,FBtr0301056;parent_type=mRNA" - - - -	9784	12,237,088 – 12,237,149	-	7	65	71.54	-1.82	0.48	0.938164
7107	dm3.chr3L	12,249,243 – 12,249,383	- - - intron="intron;ID=intron_FBgn0260941:15_FBgn0260941:14;Name=app-in;Parent=FBtr0301052,FBtr0301054,FBtr0301056;parent_type=mRNA" - - - -	9788	12,249,243 – 12,249,349	+	7	118	72.15	-2.43	0.40	0.963065
7107	dm3.chr3L	12,249,243 – 12,249,383		9789	12,249,243 – 12,249,349	-	7	118	72.15	-2.27	0.39	0.925243
7110	dm3.chr3L	12,277,858 – 12,277,965	- - - - - - - -	9793	12,277,858 – 12,277,965	-	12	114	73.05	-1.94	0.42	0.924915
7112	dm3.chr3L	12,281,376 – 12,281,450	- - - - - - - -	9795	12,281,376 – 12,281,450	+	3	74	97.30	-2.01	1.00	0.974975
7113	dm3.chr3L	12,294,173 – 12,294,275	- - - - - - - -	9796	12,294,173 – 12,294,275	+	10	106	90.67	-2.44	0.82	0.964077
7115	dm3.chr3L	12,304,171 – 12,304,292	- - - - - - - -	9798	12,304,171 – 12,304,281	-	10	111	91.96	-2.51	0.84	0.967927
7115	dm3.chr3L	12,304,171 – 12,304,292	- - - - - - - -	9799	12,304,173 – 12,304,292	-	10	120	92.86	-3.29	0.87	0.995573
7117	dm3.chr3L	12,326,965 – 12,327,029	- - - intron="intron;ID=intron_CG32105:1_CG32105:2;Name=CG32105-in;Parent=FBtr0075953;parent_type=mRNA" - - - -	9801	12,326,965 – 12,327,029	+	10	64	83.01	-2.78	0.54	0.976929
7117	dm3.chr3L	12,326,965 – 12,327,029		9802	12,326,965 – 12,327,029	-	10	64	83.01	-2.95	0.77	0.997682
7118	dm3.chr3L	12,345,193 – 12,345,276	- - - - - - - -	9803	12,345,193 – 12,345,276	+	5	84	92.71	-1.76	0.93	0.913785
7119	dm3.chr3L	12,360,716 – 12,360,829	- - - - - - - -	9805	12,360,716 – 12,360,829	-	7	116	69.16	-1.22	0.56	0.930967
7120	dm3.chr3L	12,373,639 – 12,373,709	- - - intron="intron;ID=intron_CG4357:18_CG4357:2;Name=Ncc69-in;Parent=FBtr0075988;parent_type=mRNA" - - - -	9806	12,373,639 – 12,373,709	-	5	70	84.29	-2.24	0.82	0.966773
7121	dm3.chr3L	12,376,172 – 12,376,265	- - - intron="intron;ID=intron_CG4357:18_CG4357:2;Name=Ncc69-in;Parent=FBtr0075988;parent_type=mRNA" - - - -	9807	12,376,172 – 12,376,265	+	8	94	82.64	-2.36	0.80	0.989210
7126	dm3.chr3L	12,396,081 – 12,396,173	- - - - - - - -	9812	12,396,081 – 12,396,173	+	11	110	86.50	-3.42	0.49	0.970531
7131	dm3.chr3L	12,413,564 – 12,413,623	- - - - - - - -	9819	12,413,564 – 12,413,623	+	12	61	85.58	-1.64	0.91	0.959576
7132	dm3.chr3L	12,419,876 – 12,419,926	- - - intron="intron;ID=intron_CG10704:2_CG10704:3;Name=toe-in;Parent=FBtr0075980;parent_type=mRNA" - - - -	9820	12,419,876 – 12,419,926	-	9	56	80.52	-1.67	0.85	0.970058
7139	dm3.chr3L	12,488,838 – 12,488,929	- - - intron="intron;ID=intron_CG10657:1_CG10657:2;Name=CG10657-in;Parent=FBtr0075975;parent_type=mRNA" - - - -	9829	12,488,838 – 12,488,929	+	6	91	91.34	-2.46	0.80	0.938608
7147	dm3.chr3L	12,554,485 – 12,554,603	- - - intron="intron;ID=intron_FBgn0036302:14_FBgn0036302:12;Name=sowah-in;Parent=FBtr0300887,FBtr0300888,FBtr0300889;parent_type=mRNA" - - - -	9838	12,554,485 – 12,554,580	+	10	101	67.80	-1.58	0.42	0.956611
7148	dm3.chr3L	12,556,452 – 12,556,543	- - - intron="intron;ID=intron_FBgn0036302:14_FBgn0036302:12;Name=sowah-in;Parent=FBtr0300887,FBtr0300888,FBtr0300889;parent_type=mRNA" - - - -	9841	12,556,452 – 12,556,543	-	9	109	64.59	-1.84	0.44	0.985228
7156	dm3.chr3L	12,594,565 – 12,594,658	- - - - - - - -	9850	12,594,565 – 12,594,658	-	6	120	70.51	-2.00	0.55	0.972739
7157	dm3.chr3L	12,595,517 – 12,595,615	- - - - - - - -	9851	12,595,517 – 12,595,615	-	10	119	71.79	-1.26	0.58	0.929079
7158	dm3.chr3L	12,596,837 – 12,596,951	- - - - - - - -	9853	12,596,837 – 12,596,951	-	3	114	95.25	-1.99	0.98	0.968101
7161	dm3.chr3L	12,618,043 – 12,618,138	- - - - - - - -	9857	12,618,043 – 12,618,138	+	5	95	69.86	-1.45	0.56	0.933092
7163	dm3.chr3L	12,626,061 – 12,626,157	- - - intron="intron;ID=intron_CG32111:1_CG32111:2;Name=CG32111-in;Parent=FBtr0075910;parent_type=mRNA" - - - -	9860	12,626,061 – 12,626,157	-	7	98	64.50	-1.02	0.55	0.945858
7164	dm3.chr3L	12,628,114 – 12,628,212	- - - intron="intron;ID=intron_CG32111:2_CG32111:3;Name=CG32111-in;Parent=FBtr0075910;parent_type=mRNA" - - - -	9861	12,628,114 – 12,628,212	+	7	103	83.41	-2.75	0.63	0.982608
7165	dm3.chr3L	12,631,338 – 12,631,457	- - - intron="intron;ID=intron_CG32111:2_CG32111:3;Name=CG32111-in;Parent=FBtr0075910;parent_type=mRNA" - - - -	9863	12,631,338 – 12,631,436	-	6	98	83.28	-2.49	0.62	0.939354
7165	dm3.chr3L	12,631,338 – 12,631,457		9864	12,631,347 – 12,631,457	-	5	110	83.76	-3.32	0.80	0.997095
7173	dm3.chr3L	12,710,424 – 12,710,515	- - - - - - - -	9875	12,710,424 – 12,710,515	+	6	104	60.72	-1.77	0.36	0.959967
7175	dm3.chr3L	12,719,223 – 12,719,338	- - - - - - - -	9878	12,719,223 – 12,719,338	-	5	117	68.78	-1.35	0.55	0.905723
7180	dm3.chr3L	12,735,643 – 12,735,739	- - - intron="intron;ID=intron_FBgn0052112:2_FBgn0052112:4;Name=CG32112-in;Parent=FBtr0075917;parent_type=mRNA" - - - -	9884	12,735,643 – 12,735,739	+	7	98	60.54	-1.47	0.38	0.949821
7180	dm3.chr3L	12,735,643 – 12,735,739		9885	12,735,643 – 12,735,739	-	7	98	60.54	-1.26	0.45	0.973693
7186	dm3.chr3L	12,791,064 – 12,791,154	- - - intron="intron;ID=intron_FBgn0010715:15_FBgn0010715:13;Name=Atg1-in;Parent=FBtr0075945;parent_type=mRNA" - - - -	9891	12,791,064 – 12,791,154	+	6	93	72.82	-3.32	0.43	0.998172
7186	dm3.chr3L	12,791,064 – 12,791,154		9892	12,791,064 – 12,791,154	-	6	93	72.82	-2.82	0.34	0.957633
7192	dm3.chr3L	12,829,025 – 12,829,140	- - - intron="intron;ID=intron_CG10960:1_CG10960:2;Name=CG10960-in;Parent=FBtr0075941;parent_type=mRNA" - - - -	9898	12,829,025 – 12,829,140	-	6	116	74.51	-1.47	0.62	0.912896
7196	dm3.chr3L	12,909,733 – 12,909,831	- - - - - - - -	9902	12,909,733 – 12,909,831	-	10	114	81.02	-2.64	0.50	0.939618
7197	dm3.chr3L	12,917,270 – 12,917,344	- - - - - - - -	9903	12,917,270 – 12,917,344	-	5	77	61.93	-1.02	0.54	0.930979
7200	dm3.chr3L	12,924,926 – 12,925,031	- - - - - - - -	9907	12,924,926 – 12,925,031	+	10	107	84.56	-2.61	0.81	0.993095
7201	dm3.chr3L	12,945,640 – 12,945,695	- - - - - - - -	9908	12,945,640 – 12,945,695	+	13	56	90.26	-3.43	0.71	0.995447
7206	dm3.chr3L	12,985,981 – 12,986,232	- - - - - - - -	9918	12,986,083 – 12,986,232	-	5	178	67.37	-1.84	0.47	0.942495
7207	dm3.chr3L	12,987,639 – 12,987,737	- - - - - - - -	9920	12,987,639 – 12,987,737	-	5	100	81.47	-2.02	0.76	0.920059
7208	dm3.chr3L	12,993,857 – 12,993,921	- - - - - - - -	9921	12,993,857 – 12,993,921	+	6	64	92.50	-2.42	0.95	0.988939
7209	dm3.chr3L	12,996,879 – 12,996,954	- - - - - - - -	9922	12,996,879 – 12,996,954	-	6	75	72.35	-2.51	0.68	0.998529
7212	dm3.chr3L	13,013,595 – 13,013,737	- - CDS="CDS;ID=CDS_FBgn0036337:1_397;Name=CG11255-cds;Parent=FBtr0075895,FBtr0075896;parent_type=mRNA" - - - - -	9926	13,013,595 – 13,013,706	-	14	117	74.30	-2.37	0.36	0.950929
				9927	13,013,626 – 13,013,737	+	14	119	71.36	-2.42	0.37	0.983328
				9928	13,013,626 – 13,013,737	-	14	119	71.36	-2.87	0.38	0.996852
7213	dm3.chr3L	13,027,548 – 13,027,600	- - - intron="intron;ID=intron_FBgn0083978:1_FBgn0083978:2;Name=CG17672-in;Parent=FBtr0110982;parent_type=mRNA" - - - -	9929	13,027,548 – 13,027,600	-	6	55	79.42	-2.63	0.75	0.994870
7214	dm3.chr3L	13,035,868 – 13,036,003	FBnoncoding="snoRNA;ID=FBtr0113611;Name=snoRNA:Psi28S-3327a-RA;Parent=FBgn0082967;Dbxref=FlyBase_Annotation_IDs:CR34642-RA,REFSEQ:NR_003869;score_text=Weakly" - - intron="intron;ID=intron_CG11276:4_CG11276:5;Name=RpS4-in;Parent=FBtr0075884,FBtr0075885;parent_type=mRNA" "Rfam_10.0=RF00544;snopsi28S-3327;AABU01002770.1/10717553-10717695\|1.6e-71" - - -	9930	13,035,868 – 13,036,003	+	12	146	81.50	-1.92	0.76	0.965545
7217	dm3.chr3L	13,057,581 – 13,057,713	- - - - - - - -	9934	13,057,614 – 13,057,713	-	12	115	87.88	-1.95	0.83	0.925048
7218	dm3.chr3L	13,058,570 – 13,058,637	- - - - - - - -	9935	13,058,570 – 13,058,637	+	5	67	93.99	-1.52	0.99	0.931128
7219	dm3.chr3L	13,071,320 – 13,071,449	- - - - - - - -	9937	13,071,354 – 13,071,449	+	6	95	82.88	-2.31	0.66	0.954671
7222	dm3.chr3L	13,110,567 – 13,110,727	- - - - - - - -	9940	13,110,567 – 13,110,668	+	11	116	69.78	-2.30	0.44	0.994902
7225	dm3.chr3L	13,147,614 – 13,147,707	- - - - - - - -	9946	13,147,614 – 13,147,707	+	8	107	76.89	-2.26	0.65	0.989807
7226	dm3.chr3L	13,157,750 – 13,157,853	- - - - - - - -	9949	13,157,750 – 13,157,853	-	3	116	81.49	-1.40	0.95	0.923654
7229	dm3.chr3L	13,177,542 – 13,177,639	- - - - - - - -	9953	13,177,542 – 13,177,639	-	10	98	78.61	-1.91	0.59	0.944825
7230	dm3.chr3L	13,182,910 – 13,183,044	- - - - - - - -	9955	13,182,910 – 13,183,022	-	10	116	78.61	-1.66	0.74	0.953491
7230	dm3.chr3L	13,182,910 – 13,183,044	- - - - - - - -	9956	13,182,950 – 13,183,044	+	11	116	76.03	-1.57	0.68	0.917276
7233	dm3.chr3L	13,204,313 – 13,204,388	FBnoncoding="tRNA;ID=FBtr0075828;Name=tRNA:CR32129-RA;Parent=FBgn0052129;Alias=CR32129-RA;Dbxref=FlyBase_Annotation_IDs:CR32129-RA;score_text=Weakly" tRNAscann="Pro_chr3L_trna22" - - "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|1.1e-24" - - -	9959	13,204,313 – 13,204,388	+	14	75	91.94	-1.60	0.93	0.925967
7233	dm3.chr3L	13,204,313 – 13,204,388		9960	13,204,313 – 13,204,388	-	14	75	91.94	-1.84	0.92	0.954383
7234	dm3.chr3L	13,205,457 – 13,205,568	FBnoncoding="tRNA;ID=FBtr0075830;Name=tRNA:CR32126-RA;Parent=FBgn0052126;Alias=CR32126-RA;Dbxref=FlyBase_Annotation_IDs:CR32126-RA;score_text=Weakly" tRNAscann="Pro_chr3L_trna24" - - "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|1.8e-24" - - -	9962	13,205,457 – 13,205,568	-	10	113	78.33	-1.28	0.94	0.965166
7235	dm3.chr3L	13,209,198 – 13,209,293	- - - - - - - -	9964	13,209,198 – 13,209,293	-	6	95	92.00	-1.91	0.95	0.963527
7236	dm3.chr3L	13,226,600 – 13,226,652	- - - intron="intron;ID=intron_FBgn0023095:1_FBgn0023095:2;Name=caps-in;Parent=FBtr0075832,FBtr0075833,FBtr0305480;parent_type=mRNA" - - - -	9965	13,226,600 – 13,226,652	-	6	65	75.00	-2.04	0.86	0.991035
7238	dm3.chr3L	13,242,342 – 13,242,410	- - - - - - - -	9967	13,242,342 – 13,242,410	+	6	75	60.06	-1.36	0.43	0.951173
7242	dm3.chr3L	13,260,680 – 13,260,787	- - - intron="intron;ID=intron_FBgn0023095:4_FBgn0023095:5;Name=caps-in;Parent=FBtr0075832,FBtr0305480;parent_type=mRNA" - - - -	9971	13,260,680 – 13,260,787	+	5	107	83.11	-2.25	0.72	0.944840
7245	dm3.chr3L	13,271,279 – 13,271,382	- - - - - - - -	9975	13,271,279 – 13,271,382	+	6	117	59.81	-2.30	0.33	0.987070
7246	dm3.chr3L	13,273,739 – 13,273,831	- - - - - - - -	9976	13,273,739 – 13,273,831	-	8	95	92.38	-3.31	0.82	0.993676
7248	dm3.chr3L	13,321,120 – 13,321,218	- - - - - - - -	9978	13,321,120 – 13,321,218	+	7	120	74.65	-2.65	0.51	0.981696
7248	dm3.chr3L	13,321,120 – 13,321,218	- - - - - - - -	9979	13,321,120 – 13,321,218	-	7	120	74.65	-2.66	0.54	0.988032
7252	dm3.chr3L	13,353,067 – 13,353,117	- - - - - - - -	9984	13,353,067 – 13,353,117	+	8	50	95.93	-1.58	1.00	0.944087
7253	dm3.chr3L	13,358,976 – 13,359,042	- - - - - - - -	9986	13,358,976 – 13,359,042	+	6	76	67.35	-2.64	0.39	0.989556
7254	dm3.chr3L	13,361,459 – 13,361,551	- - - - - - - -	9987	13,361,459 – 13,361,551	+	3	93	86.74	-2.41	0.76	0.911607
7256	dm3.chr3L	13,370,882 – 13,370,972	- - - - - - - -	9989	13,370,882 – 13,370,972	+	10	101	66.00	-1.97	0.32	0.912227
7257	dm3.chr3L	13,391,223 – 13,391,318	- - - intron="intron;ID=intron_CG32120:2_CG32120:3;Name=sens-in;Parent=FBtr0075862;parent_type=mRNA" - - - -	9991	13,391,223 – 13,391,318	-	5	95	77.27	-2.40	0.59	0.973481
7258	dm3.chr3L	13,426,142 – 13,426,229	FBnoncoding="tRNA;ID=FBtr0075847;Name=tRNA:V4:70BCb-RA;Parent=FBgn0012010;Dbxref=FlyBase_Annotation_IDs:CR32124-RA;score_text=Weakly" tRNAscann="Val_chr3L_trna27" - intron="intron;ID=intron_FBgn0036360:3_FBgn0036360:2;Name=CG10713-in;Parent=FBtr0075855;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;BABH01006915.1/5428-5500\|8.3e-23" - - -	9992	13,426,142 – 13,426,229	+	13	97	85.80	-1.92	0.85	0.966780
7258	dm3.chr3L	13,426,142 – 13,426,229		9993	13,426,142 – 13,426,229	-	13	97	85.80	-2.04	0.94	0.988153
7259	dm3.chr3L	13,426,740 – 13,426,839	FBnoncoding="tRNA;ID=FBtr0075856;Name=tRNA:V4:70BCa-RA;Parent=FBgn0012009;Dbxref=FlyBase_Annotation_IDs:CR32122-RA;score_text=Weakly" tRNAscann="Val_chr3L_trna37" - intron="intron;ID=intron_FBgn0036360:3_FBgn0036360:2;Name=CG10713-in;Parent=FBtr0075855;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;BABH01006915.1/5428-5500\|9.7e-23" - - -	9994	13,426,740 – 13,426,839	+	13	99	82.04	-1.32	0.87	0.935850
7265	dm3.chr3L	13,481,683 – 13,481,746	- - - intron="intron;ID=intron_CG10741:2_CG10741:3;Name=CG10741-in;Parent=FBtr0075810;parent_type=mRNA" - - - -	10001	13,481,683 – 13,481,746	+	8	82	75.56	-1.19	0.87	0.940330
7268	dm3.chr3L	13,537,198 – 13,537,300	- - - intron="intron;ID=intron_FBgn0036379:11_FBgn0036379:10;Name=bru-3-in;Parent=FBtr0075815,FBtr0303515,FBtr0303520,FBtr0303517,FBtr0075816,FBtr0303522,FBtr0303514,FBtr0303523,FBtr0303519,FBtr0303516,FBtr0303518,FBtr0303521,FBtr0303524;parent_type=mRNA" - - - -	10004	13,537,198 – 13,537,300	+	8	111	85.08	-2.48	0.61	0.900988
7278	dm3.chr3L	13,607,178 – 13,607,295	- - - intron="intron;ID=intron_FBgn0036379:15_FBgn0036379:13;Name=bru-3-in;Parent=FBtr0303521;parent_type=mRNA" - - - -	10016	13,607,178 – 13,607,295	-	11	136	72.12	-1.82	0.58	0.986105
7279	dm3.chr3L	13,607,950 – 13,608,045	- - - intron="intron;ID=intron_FBgn0036379:15_FBgn0036379:13;Name=bru-3-in;Parent=FBtr0303521;parent_type=mRNA" - - - -	10018	13,607,950 – 13,608,045	-	7	98	75.52	-2.31	0.46	0.953251
7281	dm3.chr3L	13,627,078 – 13,627,192	- - - intron="intron;ID=intron_FBgn0036379:15_FBgn0036379:13;Name=bru-3-in;Parent=FBtr0303521;parent_type=mRNA" - - - -	10020	13,627,078 – 13,627,192	-	8	118	78.90	-2.55	0.61	0.991550
7282	dm3.chr3L	13,634,465 – 13,634,587	- - - intron="intron;ID=intron_FBgn0036379:16_FBgn0036379:15;Name=bru-3-in;Parent=FBtr0075815,FBtr0303514;parent_type=mRNA" - - - -	10022	13,634,486 – 13,634,587	-	8	113	81.00	-1.93	0.75	0.952069
7288	dm3.chr3L	13,667,261 – 13,667,374	- - - - - - - -	10029	13,667,261 – 13,667,351	+	9	93	75.52	-2.59	0.42	0.979100
				10030	13,667,261 – 13,667,351	-	9	93	75.52	-2.52	0.56	0.996428
				10032	13,667,279 – 13,667,374	-	10	103	68.43	-2.87	0.39	0.998743
7291	dm3.chr3L	13,688,829 – 13,688,967	- - - - - - - -	10035	13,688,829 – 13,688,933	-	11	116	71.86	-1.71	0.48	0.939022
7292	dm3.chr3L	13,696,888 – 13,696,979	- - - - - - - -	10037	13,696,888 – 13,696,979	+	9	91	80.78	-1.56	0.80	0.936161
7295	dm3.chr3L	13,708,313 – 13,708,420	- - - - - - - -	10040	13,708,313 – 13,708,417	+	8	109	76.24	-1.60	0.64	0.953467
7297	dm3.chr3L	13,713,098 – 13,713,188	- - - - - - - -	10043	13,713,098 – 13,713,188	+	3	90	82.13	-2.12	0.88	0.973178
7302	dm3.chr3L	13,739,583 – 13,739,678	- - - - - - - -	10050	13,739,583 – 13,739,678	-	8	100	91.28	-1.85	0.89	0.909329
7306	dm3.chr3L	13,754,461 – 13,754,560	- - - - - - - -	10055	13,754,461 – 13,754,560	-	12	120	86.16	-3.22	0.58	0.980798
7308	dm3.chr3L	13,769,944 – 13,770,042	- - - - - - - -	10058	13,769,944 – 13,770,042	-	6	107	69.30	-2.12	0.45	0.980865
7309	dm3.chr3L	13,773,092 – 13,773,207	- - - intron="intron;ID=intron_FBgn0085272:2_FBgn0085272:1;Name=CG34243-in;Parent=FBtr0112437;parent_type=mRNA" - - - -	10059	13,773,092 – 13,773,207	+	6	116	80.35	-2.45	0.60	0.972428
7310	dm3.chr3L	13,781,265 – 13,781,316	- - - - - - - -	10061	13,781,265 – 13,781,316	-	3	51	97.39	-1.90	1.00	0.966891
7311	dm3.chr3L	13,792,997 – 13,793,065	- - - - - - - -	10062	13,792,997 – 13,793,065	+	7	72	75.40	-4.92	0.98	0.997431
7311	dm3.chr3L	13,792,997 – 13,793,065	- - - - - - - -	10063	13,792,997 – 13,793,065	-	7	72	75.40	-2.97	0.98	0.997915
7312	dm3.chr3L	13,798,129 – 13,798,194	- - - - - - - -	10065	13,798,129 – 13,798,194	-	4	65	52.56	-0.95	0.64	0.994847
7316	dm3.chr3L	13,816,353 – 13,816,408	- - - - - - - -	10069	13,816,353 – 13,816,408	+	5	55	98.91	-2.23	0.96	0.963339
7317	dm3.chr3L	13,817,275 – 13,817,403	- - - - - - - -	10072	13,817,287 – 13,817,403	-	5	120	94.73	-1.90	0.92	0.907250
7321	dm3.chr3L	13,845,559 – 13,845,611	- - - - - - - -	10076	13,845,559 – 13,845,611	+	7	60	65.90	-1.75	0.39	0.914858
7323	dm3.chr3L	13,879,265 – 13,879,416	- - CDS="CDS;ID=CDS_FBgn0085429:11_360;Name=CG34400-cds;Parent=FBtr0290126,FBtr0290127,FBtr0290128,FBtr0290129;parent_type=mRNA" - - - - -	10080	13,879,265 – 13,879,416	-	13	161	70.79	-2.40	0.36	0.985509
7326	dm3.chr3L	13,886,576 – 13,886,700	- - - intron="intron;ID=intron_FBgn0085429:18_FBgn0085429:17;Name=CG34400-in;Parent=FBtr0290126,FBtr0290127,FBtr0290128,FBtr0290129;parent_type=mRNA" - - - -	10083	13,886,576 – 13,886,679	-	10	118	68.46	-1.62	0.54	0.990793
7327	dm3.chr3L	13,896,025 – 13,896,091	- - - - - - - -	10085	13,896,025 – 13,896,091	+	7	67	81.47	-2.51	0.73	0.992428
7330	dm3.chr3L	13,932,605 – 13,932,730	- - - intron="intron;ID=intron_CG32137:1_CG32137:2;Name=CG32137-in;Parent=FBtr0075758;parent_type=mRNA" - - - -	10088	13,932,605 – 13,932,697	+	9	103	71.24	-2.17	0.62	0.997808
				10089	13,932,605 – 13,932,697	-	9	103	71.24	-2.36	0.48	0.994199
				10090	13,932,636 – 13,932,730	+	8	94	83.45	-2.49	0.68	0.979254
7331	dm3.chr3L	13,957,714 – 13,957,765	- - - - - - - -	10092	13,957,714 – 13,957,765	-	6	53	76.39	-1.64	0.86	0.980503
7332	dm3.chr3L	13,975,088 – 13,975,239	- - CDS="CDS;ID=CDS_CG17364:5_306;Name=CG17364-cds;Parent=FBtr0075788;parent_type=mRNA" - - - - -	10093	13,975,088 – 13,975,201	-	9	117	73.29	-2.05	0.54	0.985802
				10094	13,975,128 – 13,975,239	+	5	114	96.60	-2.40	0.93	0.970607
				10095	13,975,128 – 13,975,239	-	5	114	96.60	-2.30	0.94	0.968221
7333	dm3.chr3L	13,995,198 – 13,995,270	- - - - - - - -	10096	13,995,198 – 13,995,270	+	6	72	77.96	-2.55	0.51	0.971907
7333	dm3.chr3L	13,995,198 – 13,995,270	- - - - - - - -	10097	13,995,198 – 13,995,270	-	6	72	77.96	-1.70	0.72	0.953996
7335	dm3.chr3L	14,008,477 – 14,008,582	- - CDS="CDS;ID=CDS_CG9007:6_292;Name=CG9007-cds;Parent=FBtr0075768;parent_type=mRNA" - - - - -	10099	14,008,477 – 14,008,572	-	9	98	56.76	-2.76	0.26	0.997714
7339	dm3.chr3L	14,116,251 – 14,116,341	- - - intron="intron;ID=intron_CG32139:3_CG32139:4;Name=Sox21b-in;Parent=FBtr0075747;parent_type=mRNA" - - - -	10104	14,116,251 – 14,116,341	-	10	90	80.57	-2.36	0.88	0.993616
7340	dm3.chr3L	14,125,307 – 14,125,438	- - - - - - - -	10106	14,125,347 – 14,125,438	-	5	93	70.60	-2.06	0.49	0.966746
7341	dm3.chr3L	14,139,328 – 14,139,452	- - - - - - - -	10107	14,139,328 – 14,139,425	+	11	120	73.64	-1.99	0.56	0.974527
7342	dm3.chr3L	14,157,885 – 14,158,022	- - - - - - - -	10109	14,157,885 – 14,157,990	-	5	108	71.10	-1.79	0.55	0.962710
7343	dm3.chr3L	14,161,724 – 14,161,886	- - - - - - - -	10111	14,161,724 – 14,161,814	-	9	95	66.78	-1.41	0.45	0.908562
7344	dm3.chr3L	14,166,364 – 14,166,501	- - - - - - - -	10113	14,166,364 – 14,166,475	+	10	116	79.18	-3.19	0.52	0.996488
7344	dm3.chr3L	14,166,364 – 14,166,501	- - - - - - - -	10114	14,166,364 – 14,166,475	-	10	116	79.18	-3.43	0.42	0.993358
7345	dm3.chr3L	14,170,856 – 14,170,958	- - - - - - - -	10116	14,170,856 – 14,170,951	-	12	119	75.38	-2.03	0.51	0.931536
7345	dm3.chr3L	14,170,856 – 14,170,958	- - - - - - - -	10117	14,170,863 – 14,170,958	-	10	110	85.39	-2.81	0.52	0.906162
7346	dm3.chr3L	14,176,195 – 14,176,290	- - - - - - - -	10118	14,176,195 – 14,176,290	+	3	95	100.00	-2.80	1.00	0.993745
7347	dm3.chr3L	14,197,537 – 14,197,638	- - - - - - - -	10120	14,197,537 – 14,197,638	+	7	119	71.67	-1.56	0.68	0.980774
7351	dm3.chr3L	14,217,658 – 14,217,748	- - - intron="intron;ID=intron_CG33991:40_CG33991:35;Name=nuf-in;Parent=FBtr0100044;parent_type=mRNA" - - - -	10125	14,217,658 – 14,217,748	+	11	113	79.89	-2.78	0.59	0.989493
7354	dm3.chr3L	14,246,843 – 14,246,915	- - - - - - - -	10129	14,246,843 – 14,246,915	+	6	72	84.63	-1.69	0.83	0.914033
7354	dm3.chr3L	14,246,843 – 14,246,915	- - - - - - - -	10130	14,246,843 – 14,246,915	-	6	72	84.63	-1.86	0.78	0.912583
7357	dm3.chr3L	14,256,268 – 14,256,328	- - - - - - - -	10134	14,256,268 – 14,256,328	-	8	75	68.10	-1.05	0.60	0.912100
7362	dm3.chr3L	14,287,982 – 14,288,080	- - - intron="intron;ID=intron_CG17697:6_CG17697:2;Name=fz-in;Parent=FBtr0075743;parent_type=mRNA" - - - -	10141	14,287,982 – 14,288,080	-	8	113	68.48	-1.96	0.45	0.981762
7366	dm3.chr3L	14,328,974 – 14,329,077	- - - - - - - -	10146	14,328,978 – 14,329,077	-	8	104	66.83	-1.17	0.56	0.947878
7368	dm3.chr3L	14,350,118 – 14,350,214	- - - - - - - -	10148	14,350,118 – 14,350,214	+	4	96	97.40	-2.08	0.97	0.963892
7368	dm3.chr3L	14,350,118 – 14,350,214	- - - - - - - -	10149	14,350,118 – 14,350,214	-	4	96	97.40	-2.04	1.00	0.977504
7372	dm3.chr3L	14,411,896 – 14,411,987	- - - intron="intron;ID=intron_FBgn0087007:7_FBgn0087007:6;Name=bbg-in;Parent=FBtr0273424,FBtr0273425,FBtr0273426;parent_type=mRNA" - - - -	10153	14,411,896 – 14,411,987	-	6	92	72.13	-2.61	0.70	0.998886
7374	dm3.chr3L	14,428,941 – 14,428,995	- - - - - - - -	10155	14,428,941 – 14,428,995	-	5	54	88.70	-1.75	0.93	0.947676
7377	dm3.chr3L	14,444,534 – 14,444,609	- - - - - - - -	10158	14,444,534 – 14,444,609	+	5	75	97.87	-3.64	0.96	0.997631
7380	dm3.chr3L	14,485,726 – 14,485,819	- - - - - - - -	10161	14,485,726 – 14,485,819	+	5	116	54.76	-1.77	0.33	0.922936
7386	dm3.chr3L	14,510,488 – 14,510,588	- - - - - - - -	10168	14,510,488 – 14,510,588	+	8	107	76.91	-1.86	0.66	0.959968
7389	dm3.chr3L	14,528,091 – 14,528,150	- - - - - - - -	10171	14,528,091 – 14,528,150	+	6	76	82.27	-2.20	0.76	0.955427
7391	dm3.chr3L	14,540,074 – 14,540,174	- - - intron="intron;ID=intron_CG9238:2_CG9238:3;Name=CG9238-in;Parent=FBtr0075723,FBtr0075724;parent_type=mRNA" - - - -	10174	14,540,074 – 14,540,174	+	7	107	80.97	-2.44	0.58	0.935224
7391	dm3.chr3L	14,540,074 – 14,540,174		10175	14,540,074 – 14,540,174	-	7	107	80.97	-3.23	0.58	0.994377
7393	dm3.chr3L	14,543,125 – 14,543,221	- - CDS="CDS;ID=CDS_CG9238:6_296;Name=CG9238-cds;Parent=FBtr0075724;parent_type=mRNA" - - - - -	10177	14,543,125 – 14,543,221	+	14	113	69.90	-1.43	0.51	0.961464
7394	dm3.chr3L	14,546,187 – 14,546,317	- - - - - - - -	10180	14,546,187 – 14,546,287	-	6	117	65.41	-1.45	0.51	0.966627
7394	dm3.chr3L	14,546,187 – 14,546,317	- - - - - - - -	10181	14,546,213 – 14,546,317	-	6	120	74.21	-1.88	0.57	0.936850
7396	dm3.chr3L	14,554,299 – 14,554,423	- - - intron="intron;ID=intron_FBgn0054039:1_FBgn0054039:2;Name=CG34039-in;Parent=FBtr0301014;parent_type=mRNA" - - - -	10183	14,554,299 – 14,554,397	+	12	114	76.63	-2.06	0.52	0.957700
7398	dm3.chr3L	14,563,286 – 14,563,413	- - - - - - - -	10186	14,563,286 – 14,563,384	+	9	98	70.09	-1.62	0.53	0.986767
				10187	14,563,286 – 14,563,384	-	9	98	70.09	-2.65	0.59	0.999653
				10189	14,563,312 – 14,563,413	-	9	101	82.30	-1.78	0.88	0.977354
7402	dm3.chr3L	14,596,641 – 14,596,750	- - - - - - - -	10195	14,596,641 – 14,596,750	+	6	117	84.45	-2.60	0.63	0.943444
7404	dm3.chr3L	14,611,020 – 14,611,113	- - - intron="intron;ID=intron_FBgn0003388:1_FBgn0003388:2;Name=shd-in;Parent=FBtr0075676;parent_type=mRNA" - - - -	10198	14,611,020 – 14,611,113	+	12	106	62.67	-0.95	0.49	0.969878
7409	dm3.chr3L	14,654,151 – 14,654,241	- - - intron="intron;ID=intron_CG32146:1_CG32146:2;Name=dlp-in;Parent=FBtr0075679,FBtr0075680;parent_type=mRNA" - - - -	10205	14,654,151 – 14,654,241	-	9	118	64.83	-2.03	0.38	0.950165
7410	dm3.chr3L	14,671,970 – 14,672,105	- - - - - - - -	10206	14,671,970 – 14,672,066	+	4	108	78.64	-2.49	0.66	0.974179
7410	dm3.chr3L	14,671,970 – 14,672,105	- - - - - - - -	10207	14,672,004 – 14,672,105	+	4	114	75.58	-2.06	0.59	0.902216
7412	dm3.chr3L	14,689,026 – 14,689,085	- - - - - - - -	10210	14,689,026 – 14,689,085	+	5	67	57.40	-0.93	0.60	0.981655
7414	dm3.chr3L	14,710,502 – 14,710,611	- - - intron="intron;ID=intron_FBgn0259175:3_FBgn0259175:4;Name=ome-in;Parent=FBtr0299650,FBtr0299651;parent_type=mRNA" - - - -	10213	14,710,502 – 14,710,611	+	5	109	93.77	-2.38	0.85	0.931941
7415	dm3.chr3L	14,714,149 – 14,714,211	- - - intron="intron;ID=intron_FBgn0259175:3_FBgn0259175:4;Name=ome-in;Parent=FBtr0299650,FBtr0299651;parent_type=mRNA" - - - -	10214	14,714,149 – 14,714,211	+	7	63	64.83	-1.23	0.60	0.992411
7416	dm3.chr3L	14,723,789 – 14,723,901	- - - intron="intron;ID=intron_FBgn0259175:3_FBgn0259175:4;Name=ome-in;Parent=FBtr0299650,FBtr0299651;parent_type=mRNA" - - - -	10215	14,723,789 – 14,723,901	-	7	112	71.73	-1.59	0.62	0.986230
7417	dm3.chr3L	14,743,443 – 14,743,535	- - - intron="intron;ID=intron_FBgn0260233:2_FBgn0260233:1;Name=CG42507-in;Parent=FBtr0300641,FBtr0300642;parent_type=mRNA" - - - -	10216	14,743,443 – 14,743,535	+	8	99	68.44	-3.47	0.23	0.985019
7417	dm3.chr3L	14,743,443 – 14,743,535		10217	14,743,443 – 14,743,535	-	8	99	68.44	-3.64	0.48	0.999853
7418	dm3.chr3L	14,750,891 – 14,750,981	- - - - - - - -	10218	14,750,891 – 14,750,981	-	5	91	98.01	-1.88	1.00	0.964807
7423	dm3.chr3L	14,792,796 – 14,792,888	- - - - - - - -	10223	14,792,796 – 14,792,888	+	9	103	68.48	-1.05	0.59	0.928787
7426	dm3.chr3L	14,809,637 – 14,809,723	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10226	14,809,637 – 14,809,723	+	8	94	83.99	-1.68	0.93	0.969493
7430	dm3.chr3L	14,817,298 – 14,817,376	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10230	14,817,298 – 14,817,376	-	5	78	91.53	-2.36	0.87	0.963742
7431	dm3.chr3L	14,817,541 – 14,817,696	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10231	14,817,541 – 14,817,645	+	7	109	75.81	-2.01	0.71	0.992701
				10232	14,817,541 – 14,817,645	-	7	109	75.81	-1.77	0.71	0.985097
				10233	14,817,576 – 14,817,668	+	6	97	94.66	-2.59	0.89	0.976571
				10234	14,817,576 – 14,817,668	-	6	97	94.66	-4.11	0.92	0.998595
				10235	14,817,605 – 14,817,696	+	8	104	92.58	-3.27	0.82	0.991925
				10236	14,817,605 – 14,817,696	-	8	104	92.58	-3.07	0.85	0.990809
7433	dm3.chr3L	14,826,521 – 14,826,617	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10239	14,826,521 – 14,826,617	-	5	96	94.38	-2.04	0.95	0.963137
7434	dm3.chr3L	14,827,257 – 14,827,472	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10244	14,827,364 – 14,827,472	+	6	117	79.34	-2.88	0.63	0.994649
7434	dm3.chr3L	14,827,257 – 14,827,472		10245	14,827,364 – 14,827,472	-	6	117	79.34	-2.49	0.57	0.966335
7435	dm3.chr3L	14,828,040 – 14,828,168	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10246	14,828,040 – 14,828,168	+	7	149	72.77	-2.09	0.51	0.973694
7436	dm3.chr3L	14,833,760 – 14,833,858	- - - intron="intron;ID=intron_FBgn0036454:3_FBgn0036454:4;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10247	14,833,760 – 14,833,858	+	7	112	77.68	-1.70	0.69	0.951668
7446	dm3.chr3L	14,906,327 – 14,906,419	- - - intron="intron;ID=intron_FBgn0259099:1_FBgn0259099:3;Name=DCX-EMAP-in;Parent=FBtr0299509;parent_type=mRNA" - - - -	10258	14,906,327 – 14,906,419	+	8	103	74.51	-2.41	0.41	0.949488
7453	dm3.chr3L	14,936,917 – 14,937,056	- - - - - - - -	10268	14,936,917 – 14,937,056	-	7	151	79.94	-2.15	0.63	0.945934
7455	dm3.chr3L	14,950,171 – 14,950,280	- - - - - - - -	10271	14,950,171 – 14,950,280	+	9	120	70.69	-3.27	0.36	0.997911
7456	dm3.chr3L	14,953,285 – 14,953,335	- - - - - - - -	10272	14,953,285 – 14,953,335	+	5	52	87.40	-2.88	0.78	0.988289
7456	dm3.chr3L	14,953,285 – 14,953,335	- - - - - - - -	10273	14,953,285 – 14,953,335	-	5	52	87.40	-3.14	0.70	0.987492
7458	dm3.chr3L	14,958,176 – 14,958,302	- - - - - - - -	10275	14,958,176 – 14,958,302	-	10	127	72.39	-2.28	0.34	0.929166
7461	dm3.chr3L	14,965,455 – 14,965,593	- - - - - - - -	10279	14,965,486 – 14,965,593	+	8	107	84.51	-2.47	0.73	0.975988
7469	dm3.chr3L	15,006,222 – 15,006,325	- - - intron="intron;ID=intron_CG5392:1_CG5392:2;Name=Reck-in;Parent=FBtr0075671;parent_type=mRNA" - - - -	10289	15,006,222 – 15,006,325	-	5	112	65.27	-1.36	0.55	0.948920
7476	dm3.chr3L	15,033,755 – 15,033,920	- - - - - - - -	10297	15,033,791 – 15,033,885	+	10	108	69.54	-2.14	0.51	0.997030
				10298	15,033,791 – 15,033,885	-	10	108	69.54	-1.86	0.60	0.997354
				10299	15,033,816 – 15,033,920	+	10	116	71.87	-2.58	0.47	0.996868
				10300	15,033,816 – 15,033,920	-	10	116	71.87	-2.96	0.55	0.999555
7483	dm3.chr3L	15,083,264 – 15,083,369	- - - - - - - -	10307	15,083,264 – 15,083,369	-	12	111	55.75	-2.16	0.36	0.998611
7488	dm3.chr3L	15,102,287 – 15,102,388	- - - intron="intron;ID=intron_CG6854:6_CG6854:7;Name=CTPsyn-in;Parent=FBtr0075635;parent_type=mRNA" - - - -	10312	15,102,287 – 15,102,388	+	6	116	67.45	-1.52	0.56	0.975573
7490	dm3.chr3L	15,117,470 – 15,117,634	- - - intron="intron;ID=intron_FBgn0036481:7_FBgn0036481:6;Name=CG16959-in;Parent=FBtr0075655,FBtr0303378;parent_type=mRNA" - - - -	10314	15,117,470 – 15,117,569	-	5	103	82.87	-1.97	0.76	0.906863
7493	dm3.chr3L	15,127,642 – 15,127,785	FBnoncoding="snoRNA;ID=FBtr0091708;Name=snoRNA:MeU5-U42-RA;Parent=FBgn0065051;Alias=snoRNA:755-RA;Dbxref=FlyBase_Annotation_IDs:CR33716-RA,REFSEQ:NR_002487;score_text=Weakly" - - intron="intron;ID=intron_CG12316:4_CG12316:5;Name=CG12316-in;Parent=FBtr0075652,FBtr0075651;parent_type=mRNA" - "Noncode_2.0=n3504_u3132_AJ544002_snoRNA_Drosophila\|3.6e-57" "unique_Noncode_2.0=u3132_snoRNA_Drosophila\|3.2e-57" -	10321	15,127,642 – 15,127,785	-	11	145	76.11	-1.81	0.64	0.984153
7494	dm3.chr3L	15,139,285 – 15,139,341	- - - - - - - -	10323	15,139,285 – 15,139,341	-	3	60	85.00	-2.35	0.88	0.980893
7495	dm3.chr3L	15,144,320 – 15,144,410	- - - intron="intron;ID=intron_CG6869:2_CG6869:3;Name=FucTA-in;Parent=FBtr0075641;parent_type=mRNA" - - - -	10324	15,144,320 – 15,144,410	+	3	115	80.29	-2.99	0.51	0.915409
7498	dm3.chr3L	15,176,129 – 15,176,248	- - - - - - - -	10328	15,176,129 – 15,176,248	+	8	120	69.76	-2.10	0.35	0.917351
7499	dm3.chr3L	15,183,262 – 15,183,337	- - - - - - - -	10329	15,183,262 – 15,183,337	+	6	75	81.42	-2.93	0.90	0.997935
7503	dm3.chr3L	15,227,609 – 15,227,730	- - - - - - - -	10333	15,227,609 – 15,227,709	+	10	119	73.00	-1.50	0.66	0.952501
7508	dm3.chr3L	15,259,033 – 15,259,140	- - - - - - - -	10342	15,259,033 – 15,259,140	-	5	112	82.39	-2.12	0.70	0.919296
7510	dm3.chr3L	15,268,866 – 15,268,957	- - - - - - - -	10344	15,268,866 – 15,268,957	+	10	111	79.54	-1.56	0.80	0.948403
7510	dm3.chr3L	15,268,866 – 15,268,957	- - - - - - - -	10345	15,268,866 – 15,268,957	-	10	111	79.54	-1.93	0.81	0.983637
7516	dm3.chr3L	15,283,311 – 15,283,428	- - - - - - - -	10353	15,283,320 – 15,283,428	+	12	123	66.92	-2.67	0.24	0.907089
7517	dm3.chr3L	15,290,633 – 15,290,828	- - - - - - - -	10356	15,290,742 – 15,290,828	-	5	87	85.19	-1.78	0.85	0.922722
7518	dm3.chr3L	15,293,132 – 15,293,238	- - - intron="intron;ID=intron_FBgn0036491:3_FBgn0036491:4;Name=Best4-in;Parent=FBtr0113172;parent_type=mRNA" - - - -	10357	15,293,132 – 15,293,238	-	5	112	62.34	-0.91	0.56	0.914238
7519	dm3.chr3L	15,296,217 – 15,296,313	- - - - - - - -	10358	15,296,217 – 15,296,313	-	7	102	68.68	-0.97	0.62	0.920572
7522	dm3.chr3L	15,323,225 – 15,323,277	- - - - - - - -	10362	15,323,225 – 15,323,277	-	5	57	79.42	-3.60	0.55	0.996886
7528	dm3.chr3L	15,375,176 – 15,375,266	- - - - - - - -	10370	15,375,176 – 15,375,266	+	5	90	94.44	-2.81	0.80	0.950748
7532	dm3.chr3L	15,390,720 – 15,390,833	- - - - - - - -	10374	15,390,720 – 15,390,833	+	12	118	95.92	-1.53	0.99	0.925778
7535	dm3.chr3L	15,409,702 – 15,409,812	- - - - - - - -	10377	15,409,702 – 15,409,812	+	9	119	81.11	-2.25	0.61	0.955377
7537	dm3.chr3L	15,417,481 – 15,417,576	- - - - - - - -	10379	15,417,481 – 15,417,576	-	6	106	55.82	-1.72	0.33	0.944475
7538	dm3.chr3L	15,425,079 – 15,425,140	- - - - - - - -	10380	15,425,079 – 15,425,140	+	5	61	99.34	-2.13	1.00	0.977452
7538	dm3.chr3L	15,425,079 – 15,425,140	- - - - - - - -	10381	15,425,079 – 15,425,140	-	5	61	99.34	-2.18	1.00	0.979919
7540	dm3.chr3L	15,437,894 – 15,437,952	- - - - - - - -	10383	15,437,894 – 15,437,952	+	10	63	76.08	-2.71	0.71	0.998936
7544	dm3.chr3L	15,474,068 – 15,474,183	- - - - - - - -	10388	15,474,080 – 15,474,183	+	12	118	77.82	-2.12	0.53	0.947073
7551	dm3.chr3L	15,500,254 – 15,500,396	- - - intron="intron;ID=intron_FBgn0036502:3_FBgn0036502:2;Name=CG7841-in;Parent=FBtr0075604;parent_type=mRNA" - - - -	10396	15,500,254 – 15,500,361	-	5	107	85.89	-2.42	0.82	0.977004
7551	dm3.chr3L	15,500,254 – 15,500,396		10397	15,500,290 – 15,500,396	-	5	106	95.04	-2.68	0.93	0.987849
7554	dm3.chr3L	15,524,294 – 15,524,387	- - - - - - - -	10401	15,524,294 – 15,524,387	+	5	99	84.66	-1.81	0.84	0.913570
7556	dm3.chr3L	15,536,385 – 15,536,482	- - - intron="intron;ID=intron_FBgn0004396:1_FBgn0004396:2;Name=CrebA-in;Parent=FBtr0075557,FBtr0075558;parent_type=mRNA" - - - -	10403	15,536,385 – 15,536,482	+	9	103	90.84	-2.36	0.82	0.947831
7556	dm3.chr3L	15,536,385 – 15,536,482		10404	15,536,385 – 15,536,482	-	9	103	90.84	-1.79	1.00	0.979936
7558	dm3.chr3L	15,538,096 – 15,538,183	- - - intron="intron;ID=intron_FBgn0004396:1_FBgn0004396:2;Name=CrebA-in;Parent=FBtr0075557,FBtr0075558;parent_type=mRNA" - - - -	10406	15,538,096 – 15,538,183	-	9	88	83.46	-2.13	0.67	0.930471
7561	dm3.chr3L	15,587,569 – 15,587,635	- - - intron="intron;ID=intron_FBgn0036518:1_FBgn0036518:2;Name=RhoGAP71E-in;Parent=FBtr0075567,FBtr0075568,FBtr0075569,FBtr0290065,FBtr0303510;parent_type=mRNA" - - - -	10409	15,587,569 – 15,587,635	+	9	70	61.49	-1.77	0.34	0.962564
7562	dm3.chr3L	15,588,802 – 15,588,859	- - - intron="intron;ID=intron_FBgn0036518:1_FBgn0036518:2;Name=RhoGAP71E-in;Parent=FBtr0075567,FBtr0075568,FBtr0075569,FBtr0290065,FBtr0303510;parent_type=mRNA" - - - -	10410	15,588,802 – 15,588,859	+	5	61	68.07	-1.38	0.53	0.901862
7565	dm3.chr3L	15,592,120 – 15,592,222	- - - intron="intron;ID=intron_FBgn0036518:1_FBgn0036518:2;Name=RhoGAP71E-in;Parent=FBtr0075567,FBtr0075568,FBtr0075569,FBtr0290065,FBtr0303510;parent_type=mRNA" - - - -	10414	15,592,120 – 15,592,222	-	6	115	65.05	-1.73	0.43	0.935872
7567	dm3.chr3L	15,610,075 – 15,610,178	- - - intron="intron;ID=intron_FBgn0259236:2_FBgn0259236:1;Name=comm3-in;Parent=FBtr0299851;parent_type=mRNA" - - - -	10416	15,610,075 – 15,610,168	+	7	116	73.81	-2.25	0.47	0.938029
7567	dm3.chr3L	15,610,075 – 15,610,178		10417	15,610,081 – 15,610,178	+	10	115	71.63	-1.46	0.76	0.979516
7573	dm3.chr3L	15,646,636 – 15,646,769	- - - - - - - -	10423	15,646,636 – 15,646,743	-	4	110	84.33	-2.47	0.79	0.975055
7577	dm3.chr3L	15,667,609 – 15,667,663	- - - - - - - -	10430	15,667,609 – 15,667,663	-	7	58	67.82	-1.83	0.49	0.985716
7580	dm3.chr3L	15,698,495 – 15,698,605	- - - - - - - -	10433	15,698,495 – 15,698,605	+	8	115	67.46	-1.92	0.40	0.964531
7583	dm3.chr3L	15,708,759 – 15,708,818	- - - - - - - -	10436	15,708,759 – 15,708,818	+	6	60	96.07	-2.70	0.99	0.994700
7583	dm3.chr3L	15,708,759 – 15,708,818	- - - - - - - -	10437	15,708,759 – 15,708,818	-	6	60	96.07	-1.90	0.96	0.945960
7584	dm3.chr3L	15,712,606 – 15,712,695	- - CDS="CDS;ID=CDS_FBgn0260776:6_438;Name=CG42570-cds;Parent=FBtr0301333;parent_type=mRNA" - - - - -	10438	15,712,606 – 15,712,695	+	5	116	75.35	-3.96	0.78	0.999553
7584	dm3.chr3L	15,712,606 – 15,712,695		10439	15,712,606 – 15,712,695	-	5	116	75.35	-3.81	0.70	0.999501
7585	dm3.chr3L	15,716,619 – 15,716,692	- - - intron="intron;ID=intron_FBgn0010105:2_FBgn0010105:1;Name=comm-in;Parent=FBtr0075579;parent_type=mRNA" - - - -	10440	15,716,619 – 15,716,692	+	7	76	71.57	-2.17	0.50	0.992979
7585	dm3.chr3L	15,716,619 – 15,716,692		10441	15,716,619 – 15,716,692	-	7	76	71.57	-1.43	0.54	0.948534
7588	dm3.chr3L	15,724,725 – 15,724,776	- - - - - - - -	10444	15,724,725 – 15,724,776	-	5	51	98.82	-2.19	1.00	0.981386
7589	dm3.chr3L	15,726,521 – 15,726,596	- - - - - - - -	10446	15,726,521 – 15,726,596	-	4	78	83.44	-2.35	0.78	0.969300
7592	dm3.chr3L	15,743,040 – 15,743,143	- - - - - - - -	10449	15,743,040 – 15,743,143	+	8	109	72.77	-2.42	0.43	0.960372
7596	dm3.chr3L	15,765,277 – 15,765,396	- - - - - - - -	10454	15,765,277 – 15,765,370	-	7	105	68.38	-1.72	0.57	0.992690
7600	dm3.chr3L	15,780,418 – 15,780,531	- - - - - - - -	10461	15,780,418 – 15,780,508	+	9	94	77.75	-2.68	0.87	0.998025
				10462	15,780,418 – 15,780,508	-	9	94	77.75	-2.77	0.69	0.997965
				10463	15,780,439 – 15,780,531	+	12	114	75.31	-2.49	0.78	0.997830
				10464	15,780,439 – 15,780,531	-	12	114	75.31	-2.19	0.73	0.994857
7601	dm3.chr3L	15,783,840 – 15,783,938	- - - - - - - -	10466	15,783,840 – 15,783,938	-	5	128	66.28	-1.84	0.53	0.965321
7604	dm3.chr3L	15,814,543 – 15,814,599	- - CDS="CDS;ID=CDS_FBgn0036534:1_370;Name=Dcp2-cds;Parent=FBtr0304975;parent_type=mRNA" - - - - -	10469	15,814,543 – 15,814,599	-	12	56	89.77	-1.80	0.89	0.932155
7605	dm3.chr3L	15,821,412 – 15,821,467	- - CDS="CDS;ID=CDS_CG6224:3_296;Name=dbo-cds;Parent=FBtr0075505;parent_type=mRNA" - - - - -	10470	15,821,412 – 15,821,467	+	9	55	63.63	-1.53	0.59	0.998397
7606	dm3.chr3L	15,836,505 – 15,836,595	FBnoncoding="pre_miRNA;ID=FBtr0304186;Name=mir-263b-RM;Parent=FBgn0262371;Alias=CR42886-RM;Dbxref=FlyBase_Annotation_IDs:CR42886-RM,miRBase:MI0000383" - - intron="intron;ID=intron_CG32150:1_CG32150:6;Name=CG32150-in;Parent=FBtr0075534;parent_type=mRNA" "Rfam_10.0=RF00706;mir-263;AAKO01000155.1/113420-113509\|1.8e-42" - - "mirBase_v16=dme-mir-263b\|1.4e-46"	10471	15,836,505 – 15,836,595	+	11	96	80.52	-3.82	0.71	0.999627
7606	dm3.chr3L	15,836,505 – 15,836,595		10472	15,836,505 – 15,836,595	-	11	96	80.52	-4.88	0.67	0.999850
7611	dm3.chr3L	15,866,232 – 15,866,324	- - - intron="intron;ID=intron_FBgn0036542:18_FBgn0036542:17;Name=pHCl-in;Parent=FBtr0100034,FBtr0100035,FBtr0100036,FBtr0100037,FBtr0301510;parent_type=mRNA" - - - -	10478	15,866,232 – 15,866,324	+	8	115	71.87	-1.05	0.75	0.923265
7612	dm3.chr3L	15,871,795 – 15,871,902	- - - intron="intron;ID=intron_FBgn0036542:18_FBgn0036542:17;Name=pHCl-in;Parent=FBtr0100034,FBtr0100035,FBtr0100036,FBtr0100037,FBtr0301510;parent_type=mRNA" - - - -	10479	15,871,795 – 15,871,902	-	7	109	79.95	-2.31	0.62	0.976030
7615	dm3.chr3L	15,883,736 – 15,883,844	- - - intron="intron;ID=intron_FBgn0036542:19_FBgn0036542:18;Name=pHCl-in;Parent=FBtr0100034,FBtr0100035,FBtr0100036,FBtr0100037,FBtr0301510;parent_type=mRNA" - - - -	10483	15,883,736 – 15,883,844	-	9	120	90.94	-2.45	0.78	0.936789
7616	dm3.chr3L	15,898,025 – 15,898,150	- - - intron="intron;ID=intron_FBgn0036544:8_FBgn0036544:7;Name=sff-in;Parent=FBtr0089527;parent_type=mRNA" - - - -	10484	15,898,025 – 15,898,150	+	5	125	80.54	-3.84	0.78	0.999333
7616	dm3.chr3L	15,898,025 – 15,898,150		10485	15,898,025 – 15,898,150	-	5	125	80.54	-4.09	0.70	0.999495
7617	dm3.chr3L	15,917,955 – 15,918,207	- - - - - - - -	10486	15,917,955 – 15,918,087	-	5	133	97.74	-3.20	0.96	0.995719
7617	dm3.chr3L	15,917,955 – 15,918,207	- - - - - - - -	10487	15,918,087 – 15,918,207	+	6	128	71.93	-1.32	0.59	0.905649
7619	dm3.chr3L	15,941,619 – 15,941,711	- - - intron="intron;ID=intron_CG6117:10_CG6117:3;Name=Pka-C3-in;Parent=FBtr0075529;parent_type=mRNA" - - - -	10489	15,941,619 – 15,941,711	+	5	97	92.23	-2.98	0.88	0.991990
7624	dm3.chr3L	16,010,954 – 16,011,011	- - - - - - - -	10495	16,010,954 – 16,011,011	-	12	57	97.53	-2.40	1.00	0.990681
7630	dm3.chr3L	16,052,159 – 16,052,230	- - - intron="intron;ID=intron_FBgn0005536:6_FBgn0005536:7;Name=Mbs-in;Parent=FBtr0301473;parent_type=mRNA" - - - -	10502	16,052,159 – 16,052,230	-	6	71	87.22	-1.97	0.81	0.912055
7636	dm3.chr3L	16,142,565 – 16,142,633	- - - - - - - -	10510	16,142,565 – 16,142,633	+	6	71	74.49	-1.37	0.75	0.942783
7637	dm3.chr3L	16,147,901 – 16,148,034	- - - - - - - -	10511	16,147,901 – 16,148,005	+	7	112	72.61	-2.00	0.49	0.956477
				10512	16,147,901 – 16,148,005	-	7	112	72.61	-1.93	0.53	0.969409
				10513	16,147,931 – 16,148,034	+	7	108	73.78	-1.48	0.59	0.909573
7638	dm3.chr3L	16,148,146 – 16,148,205	- - - - - - - -	10515	16,148,146 – 16,148,205	+	6	59	80.11	-2.20	0.74	0.985936
7644	dm3.chr3L	16,170,583 – 16,170,672	- - - - - - - -	10522	16,170,583 – 16,170,672	-	4	92	70.72	-2.23	0.55	0.980550
7645	dm3.chr3L	16,184,929 – 16,185,055	- - - - - - - -	10523	16,184,929 – 16,185,055	+	13	132	81.55	-1.99	0.71	0.981128
7645	dm3.chr3L	16,184,929 – 16,185,055	- - - - - - - -	10524	16,184,929 – 16,185,055	-	13	132	81.55	-1.66	0.76	0.963808
7646	dm3.chr3L	16,185,858 – 16,185,939	- - - - - - - -	10525	16,185,858 – 16,185,939	-	6	81	99.34	-2.21	1.00	0.981181
7651	dm3.chr3L	16,215,127 – 16,215,220	FBnoncoding="tRNA;ID=FBtr0075456;Name=tRNA:CR32153-RA;Parent=FBgn0052153;Alias=CR32153-RA;Dbxref=FlyBase_Annotation_IDs:CR32153-RA;score_text=Weakly" tRNAscann="Met_chr3L_trna29" - - "Rfam_10.0=RF00005;tRNA;AAWU01021761.1/90707-90779\|9.0e-23" - - -	10531	16,215,127 – 16,215,220	-	10	106	83.06	-1.62	0.97	0.979137
7652	dm3.chr3L	16,216,230 – 16,216,300	- - - - - - - -	10532	16,216,230 – 16,216,300	+	8	77	84.27	-3.72	0.79	0.999026
7659	dm3.chr3L	16,292,187 – 16,292,288	- - - - - - - -	10541	16,292,187 – 16,292,288	+	3	115	62.91	-1.52	0.61	0.941713
7661	dm3.chr3L	16,307,485 – 16,307,603	- - - - - - - -	10545	16,307,510 – 16,307,603	+	12	119	64.81	-2.11	0.49	0.997957
7667	dm3.chr3L	16,377,458 – 16,377,554	- - - - - - - -	10551	16,377,458 – 16,377,554	+	7	107	62.46	-1.72	0.39	0.939712
7668	dm3.chr3L	16,387,520 – 16,387,665	- - - - - - - -	10553	16,387,615 – 16,387,665	-	5	50	95.20	-2.98	0.96	0.995539
7670	dm3.chr3L	16,398,574 – 16,398,667	- - CDS="CDS;ID=CDS_CG4609:13_331;Name=fax-cds;Parent=FBtr0075412,FBtr0075413;parent_type=mRNA" - - - - -	10555	16,398,574 – 16,398,667	+	13	106	73.79	-1.06	0.71	0.956714
7678	dm3.chr3L	16,525,537 – 16,525,639	- - - - - - - -	10563	16,525,537 – 16,525,639	-	6	114	83.02	-2.10	0.70	0.913407
7679	dm3.chr3L	16,528,348 – 16,528,447	- - - - - - - -	10564	16,528,348 – 16,528,447	-	5	100	68.74	-1.51	0.58	0.939174
7684	dm3.chr3L	16,563,968 – 16,564,073	- - - - - - - -	10569	16,563,968 – 16,564,073	-	5	105	86.50	-2.34	0.78	0.947544
7685	dm3.chr3L	16,564,095 – 16,564,205	- - - - - - - -	10570	16,564,095 – 16,564,205	-	5	113	80.11	-1.97	0.69	0.916074
7686	dm3.chr3L	16,564,313 – 16,564,453	- - - - - - - -	10572	16,564,349 – 16,564,445	+	8	113	65.36	-1.35	0.54	0.962743
7688	dm3.chr3L	16,625,351 – 16,625,476	- - - intron="intron;ID=intron_FBgn0000017:9_FBgn0000017:8;Name=Abl-in;Parent=FBtr0112790;parent_type=mRNA" - - - -	10575	16,625,351 – 16,625,441	+	6	90	81.04	-2.70	0.69	0.993658
7688	dm3.chr3L	16,625,351 – 16,625,476		10576	16,625,351 – 16,625,441	-	6	90	81.04	-2.04	0.77	0.977034
7690	dm3.chr3L	16,633,340 – 16,633,464	- - - intron="intron;ID=intron_FBgn0000017:9_FBgn0000017:8;Name=Abl-in;Parent=FBtr0112790;parent_type=mRNA" - - - -	10579	16,633,340 – 16,633,439	+	7	105	62.95	-2.01	0.33	0.905585
7693	dm3.chr3L	16,639,736 – 16,639,796	- - - intron="intron;ID=intron_FBgn0000017:9_FBgn0000017:8;Name=Abl-in;Parent=FBtr0112790;parent_type=mRNA" - - - -	10584	16,639,736 – 16,639,796	+	3	60	94.44	-4.04	0.81	0.996432
7693	dm3.chr3L	16,639,736 – 16,639,796		10585	16,639,736 – 16,639,796	-	3	60	94.44	-4.76	0.90	0.998789
7694	dm3.chr3L	16,642,446 – 16,642,573	- - - - - - - -	10586	16,642,446 – 16,642,546	+	4	100	88.50	-3.74	0.93	0.998710
				10587	16,642,446 – 16,642,546	-	4	100	88.50	-1.66	0.92	0.913581
				10588	16,642,481 – 16,642,573	+	4	92	89.13	-2.21	0.91	0.974941
				10589	16,642,481 – 16,642,573	-	4	92	89.13	-2.22	0.94	0.983590
7695	dm3.chr3L	16,643,566 – 16,643,686	- - CDS="CDS;ID=CDS_CG3971:5_306;Name=Baldspot-cds;Parent=FBtr0075355,FBtr0075356;parent_type=mRNA" - - - - -	10590	16,643,566 – 16,643,686	-	15	120	84.56	-2.17	0.63	0.906098
7698	dm3.chr3L	16,650,862 – 16,651,004	- - - intron="intron;ID=intron_CG3971:2_CG3971:3;Name=Baldspot-in;Parent=FBtr0075355,FBtr0075356;parent_type=mRNA" - - - -	10593	16,650,862 – 16,650,976	+	3	117	90.17	-4.16	0.90	0.998752
7698	dm3.chr3L	16,650,862 – 16,651,004		10594	16,650,862 – 16,650,976	-	3	117	90.17	-2.80	0.85	0.982547
7699	dm3.chr3L	16,654,657 – 16,654,886	- - - - - - - -	10596	16,654,657 – 16,654,735	-	5	78	97.69	-1.83	1.01	0.968614
7702	dm3.chr3L	16,691,257 – 16,691,398	- - - intron="intron;ID=intron_FBgn0063485:10_FBgn0063485:9;Name=Lasp-in;Parent=FBtr0100145,FBtr0075350,FBtr0306151,FBtr0306152;parent_type=mRNA" - - - -	10601	16,691,257 – 16,691,365	+	6	112	78.81	-1.72	0.69	0.900417
				10602	16,691,257 – 16,691,365	-	6	112	78.81	-2.10	0.61	0.931600
				10603	16,691,296 – 16,691,398	+	6	106	77.50	-2.30	0.62	0.973173
7705	dm3.chr3L	16,698,314 – 16,698,520	- - CDS="CDS;ID=CDS_FBgn0036654:2_485;Name=CG9692-cds;Parent=FBtr0075317;parent_type=mRNA" - - - - -	10606	16,698,314 – 16,698,429	-	6	118	71.32	-2.17	0.44	0.959747
7705	dm3.chr3L	16,698,314 – 16,698,520		10608	16,698,389 – 16,698,492	+	5	120	78.50	-2.84	0.60	0.986603
7714	dm3.chr3L	16,803,527 – 16,803,605	- - CDS="CDS;ID=CDS_FBgn0036665:2_481;Name=CG13024-cds;Parent=FBtr0273320,FBtr0305913;parent_type=mRNA" - - - - -	10619	16,803,527 – 16,803,605	-	14	86	75.65	-1.57	0.60	0.928740
7717	dm3.chr3L	16,846,797 – 16,846,893	- - - intron="intron;ID=intron_CG9668:1_CG9668:2;Name=Rh4-in;Parent=FBtr0075338;parent_type=mRNA" - - - -	10623	16,846,797 – 16,846,893	-	7	113	61.03	-1.32	0.43	0.939371
7718	dm3.chr3L	16,847,473 – 16,847,576	- - - intron="intron;ID=intron_CG9668:1_CG9668:2;Name=Rh4-in;Parent=FBtr0075338;parent_type=mRNA" - - - -	10624	16,847,473 – 16,847,576	+	4	103	77.89	-3.10	0.84	0.998330
7718	dm3.chr3L	16,847,473 – 16,847,576		10625	16,847,473 – 16,847,576	-	4	103	77.89	-2.02	0.78	0.972696
7719	dm3.chr3L	16,851,418 – 16,851,484	- - - - - - - -	10626	16,851,418 – 16,851,484	+	5	66	98.79	-2.80	0.98	0.992750
7721	dm3.chr3L	16,868,744 – 16,868,830	- - - intron="intron;ID=intron_FBgn0261565:4_FBgn0261565:5;Name=Lmpt-in;Parent=FBtr0302781;parent_type=mRNA" - - - -	10629	16,868,744 – 16,868,830	-	11	98	54.71	-3.20	0.11	0.993555
7726	dm3.chr3L	16,895,404 – 16,895,502	- - - intron="intron;ID=intron_FBgn0261565:13_FBgn0261565:14;Name=Lmpt-in;Parent=FBtr0302786;parent_type=mRNA" - - - -	10635	16,895,404 – 16,895,502	+	10	111	65.00	-1.57	0.41	0.963062
7727	dm3.chr3L	16,909,170 – 16,909,220	- - - intron="intron;ID=intron_FBgn0261565:19_FBgn0261565:24;Name=Lmpt-in;Parent=FBtr0302778,FBtr0302779,FBtr0302780,FBtr0302781,FBtr0302782,FBtr0302783,FBtr0302785;parent_type=mRNA" - - - -	10637	16,909,170 – 16,909,220	-	6	50	94.00	-2.55	0.89	0.977654
7731	dm3.chr3L	16,952,256 – 16,952,348	- - - - - - - -	10641	16,952,256 – 16,952,348	+	11	107	66.96	-0.92	0.57	0.950611
7738	dm3.chr3L	17,000,644 – 17,000,750	- - - - - - - -	10649	17,000,644 – 17,000,750	-	6	112	71.54	-1.69	0.57	0.962592
7740	dm3.chr3L	17,010,213 – 17,010,373	- - CDS="CDS;ID=CDS_CG7728:1_306;Name=CG7728-cds;Parent=FBtr0075274;parent_type=mRNA" - - - - -	10651	17,010,213 – 17,010,333	+	15	120	83.45	-2.29	0.60	0.946562
7742	dm3.chr3L	17,038,678 – 17,038,749	- - - - - - - -	10654	17,038,678 – 17,038,749	+	5	71	86.72	-2.12	0.78	0.904780
7745	dm3.chr3L	17,052,767 – 17,052,859	- - - - - - - -	10658	17,052,767 – 17,052,859	-	4	95	90.88	-1.92	0.89	0.904332
7746	dm3.chr3L	17,054,660 – 17,054,783	- - - - - - - -	10659	17,054,660 – 17,054,755	+	10	111	69.35	-1.75	0.69	0.996727
				10660	17,054,660 – 17,054,755	-	10	111	69.35	-1.24	0.70	0.985493
				10661	17,054,688 – 17,054,783	+	11	113	62.60	-2.04	0.44	0.996210
7750	dm3.chr3L	17,067,288 – 17,067,402	- - CDS="CDS;ID=CDS_FBgn0052169:7_322;Name=Rbp6-cds;Parent=FBtr0290066;parent_type=mRNA" - - - - -	10666	17,067,288 – 17,067,402	+	14	123	74.49	-1.58	0.56	0.960062
7752	dm3.chr3L	17,070,044 – 17,070,134	- - CDS="CDS;ID=CDS_FBgn0052169:9_285;Name=Rbp6-cds;Parent=FBtr0113427;parent_type=mRNA" intron="intron;ID=intron_FBgn0052169:10_FBgn0052169:8;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113428,FBtr0290066;parent_type=mRNA" - - - -	10669	17,070,044 – 17,070,134	+	9	111	70.44	-1.95	0.51	0.976292
7756	dm3.chr3L	17,100,552 – 17,100,653	- - - intron="intron;ID=intron_FBgn0052169:13_FBgn0052169:12;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427,FBtr0113428,FBtr0290066;parent_type=mRNA" - - - -	10673	17,100,552 – 17,100,653	+	8	117	79.34	-2.24	0.54	0.931820
7765	dm3.chr3L	17,166,438 – 17,166,537	- - - intron="intron;ID=intron_FBgn0052169:17_FBgn0052169:16;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10683	17,166,438 – 17,166,537	+	6	101	79.42	-2.02	0.68	0.958265
7767	dm3.chr3L	17,170,420 – 17,170,518	- - - intron="intron;ID=intron_FBgn0052169:17_FBgn0052169:16;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10686	17,170,420 – 17,170,518	-	6	107	90.43	-1.97	0.88	0.927420
7768	dm3.chr3L	17,170,617 – 17,170,732	- - - intron="intron;ID=intron_FBgn0052169:17_FBgn0052169:16;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10687	17,170,617 – 17,170,732	+	12	120	97.37	-3.41	0.97	0.997459
7770	dm3.chr3L	17,176,836 – 17,176,983	- - - intron="intron;ID=intron_FBgn0052169:18_FBgn0052169:17;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10690	17,176,836 – 17,176,946	+	6	110	89.14	-2.17	0.79	0.911458
7771	dm3.chr3L	17,185,968 – 17,186,060	- - - intron="intron;ID=intron_FBgn0052169:18_FBgn0052169:17;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10692	17,185,968 – 17,186,060	-	6	94	88.42	-2.13	0.79	0.908577
7772	dm3.chr3L	17,190,736 – 17,190,829	- - - intron="intron;ID=intron_FBgn0052169:18_FBgn0052169:17;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10693	17,190,736 – 17,190,829	-	4	103	85.20	-2.15	0.82	0.943941
7774	dm3.chr3L	17,219,157 – 17,219,251	- - - intron="intron;ID=intron_FBgn0052169:19_FBgn0052169:18;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10695	17,219,157 – 17,219,251	-	8	99	79.46	-2.39	0.49	0.931514
7777	dm3.chr3L	17,234,189 – 17,234,281	- - - intron="intron;ID=intron_CG6512:6_CG6512:3;Name=CG6512-in;Parent=FBtr0075252;parent_type=mRNA" - - - -	10698	17,234,189 – 17,234,281	-	4	98	68.75	-2.29	0.50	0.974934
7778	dm3.chr3L	17,234,643 – 17,234,742	- - - intron="intron;ID=intron_CG6512:5_CG6512:6;Name=CG6512-in;Parent=FBtr0075252;parent_type=mRNA" - - - -	10699	17,234,643 – 17,234,742	-	14	118	68.21	-2.15	0.36	0.957809
7779	dm3.chr3L	17,247,411 – 17,247,507	- - - - - - - -	10701	17,247,411 – 17,247,507	-	6	96	74.31	-2.02	0.81	0.995617
7780	dm3.chr3L	17,248,684 – 17,248,735	- - - - - - - -	10703	17,248,684 – 17,248,735	-	4	53	91.99	-2.42	0.93	0.983816
7782	dm3.chr3L	17,262,846 – 17,262,940	- - - - - - - -	10706	17,262,846 – 17,262,940	+	12	105	68.13	-1.17	0.54	0.970643
7784	dm3.chr3L	17,293,310 – 17,293,443	- - - - - - - -	10709	17,293,348 – 17,293,443	+	9	119	65.89	-1.26	0.74	0.989312
7788	dm3.chr3L	17,308,080 – 17,308,218	FBnoncoding="pre_miRNA;ID=FBtr0304210;Name=mir-219-RM;Parent=FBgn0262376;Alias=CR42897-RM;Dbxref=FlyBase_Annotation_IDs:CR42897-RM,miRBase:MI0000358" - - - "Rfam_10.0=RF00251;mir-219;AANI01017339.1/197098-197168\|9.2e-24" - - "mirBase_v16=dme-mir-219\|2.4e-52"	10713	17,308,080 – 17,308,218	+	13	159	81.10	-3.65	0.65	0.999324
7792	dm3.chr3L	17,332,977 – 17,333,104	FBnoncoding="tRNA;ID=FBtr0075244;Name=tRNA:CR32173-RA;Parent=FBgn0052173;Alias=CR32173-RA;Dbxref=FlyBase_Annotation_IDs:CR32173-RA;score_text=Weakly" tRNAscann="Pro_chr3L_trna35" - - "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|3.6e-29" - - -	10717	17,332,977 – 17,333,067	+	9	93	72.92	-0.90	0.77	0.935715
				10718	17,332,977 – 17,333,067	-	9	93	72.92	-0.89	0.76	0.930352
				10719	17,333,010 – 17,333,104	+	11	110	74.46	-1.71	0.74	0.990371
7794	dm3.chr3L	17,381,973 – 17,382,076	- - - intron="intron;ID=intron_CG13731:4_CG13731:5;Name=CG13731-in;Parent=FBtr0075237;parent_type=mRNA" - - - -	10722	17,381,973 – 17,382,076	+	12	119	86.52	-2.93	0.56	0.947914
7794	dm3.chr3L	17,381,973 – 17,382,076		10723	17,381,973 – 17,382,076	-	12	119	86.52	-2.31	0.70	0.928673
7796	dm3.chr3L	17,402,779 – 17,402,869	- - CDS="CDS;ID=CDS_CG3897:2_279;Name=blot-cds;Parent=FBtr0075232,FBtr0075233;parent_type=mRNA" - - - - -	10725	17,402,779 – 17,402,869	-	8	102	62.15	-0.96	0.51	0.948648
7797	dm3.chr3L	17,406,131 – 17,406,229	- - - intron="intron;ID=intron_CG3897:7_CG3897:2;Name=blot-in;Parent=FBtr0075233;parent_type=mRNA" - - - -	10726	17,406,131 – 17,406,229	+	6	113	62.32	-1.47	0.44	0.913612
7800	dm3.chr3L	17,418,965 – 17,419,056	- - - - - - - -	10729	17,418,965 – 17,419,056	+	11	107	58.28	-0.54	0.58	0.972083
7802	dm3.chr3L	17,439,536 – 17,439,626	- - - intron="intron;ID=intron_CG18265:1_CG18265:2;Name=CG18265-in;Parent=FBtr0075219;parent_type=mRNA" - - - -	10731	17,439,536 – 17,439,626	-	6	94	94.55	-3.06	0.80	0.975782
7805	dm3.chr3L	17,446,551 – 17,446,689	- - - - - - - -	10734	17,446,551 – 17,446,689	+	5	140	76.53	-3.68	0.76	0.999530
7807	dm3.chr3L	17,471,824 – 17,471,891	- - CDS="CDS;ID=CDS_FBgn0036729:1_402;Name=CG13733-cds;Parent=FBtr0075225;parent_type=mRNA" - - - - -	10737	17,471,824 – 17,471,891	+	6	67	85.17	-2.68	0.87	0.994630
7807	dm3.chr3L	17,471,824 – 17,471,891		10738	17,471,824 – 17,471,891	-	6	67	85.17	-2.35	0.71	0.947615
7808	dm3.chr3L	17,473,284 – 17,473,396	- - - - - - - -	10739	17,473,284 – 17,473,396	+	5	120	87.33	-4.61	0.72	0.999215
7808	dm3.chr3L	17,473,284 – 17,473,396	- - - - - - - -	10740	17,473,284 – 17,473,396	-	5	120	87.33	-6.10	0.75	0.999402
7809	dm3.chr3L	17,484,374 – 17,484,515	- - - intron="intron;ID=intron_FBgn0036732:3_FBgn0036732:4;Name=Oatp74D-in;Parent=FBtr0075173,FBtr0302041;parent_type=mRNA" - - - -	10742	17,484,404 – 17,484,515	-	3	111	85.53	-1.79	0.92	0.939104
7810	dm3.chr3L	17,492,622 – 17,492,720	- - - intron="intron;ID=intron_FBgn0036732:3_FBgn0036732:4;Name=Oatp74D-in;Parent=FBtr0075173,FBtr0302041;parent_type=mRNA" - - - -	10744	17,492,622 – 17,492,720	-	5	103	72.66	-2.43	0.54	0.983838
7813	dm3.chr3L	17,517,291 – 17,517,392	- - - - - - - -	10748	17,517,291 – 17,517,392	+	5	104	51.15	-0.73	0.55	0.985785
7813	dm3.chr3L	17,517,291 – 17,517,392	- - - - - - - -	10749	17,517,291 – 17,517,392	-	5	104	51.15	-1.52	0.64	0.999503
7816	dm3.chr3L	17,525,055 – 17,525,193	- - - intron="intron;ID=intron_FBgn0259174:2_FBgn0259174:5;Name=Nedd4-in;Parent=FBtr0299646,FBtr0299647,FBtr0299648,FBtr0300519,FBtr0300520;parent_type=mRNA" - - - -	10752	17,525,055 – 17,525,163	+	4	108	83.33	-2.16	0.72	0.902150
				10753	17,525,055 – 17,525,163	-	4	108	83.33	-2.55	0.76	0.979714
				10755	17,525,086 – 17,525,193	-	5	111	70.32	-2.27	0.46	0.973409
7817	dm3.chr3L	17,525,633 – 17,525,699	- - - intron="intron;ID=intron_FBgn0259174:2_FBgn0259174:5;Name=Nedd4-in;Parent=FBtr0299646,FBtr0299647,FBtr0299648,FBtr0300519,FBtr0300520;parent_type=mRNA" - - - -	10756	17,525,633 – 17,525,699	+	7	66	65.39	-1.23	0.48	0.962201
7818	dm3.chr3L	17,531,508 – 17,531,583	- - - intron="intron;ID=intron_FBgn0259174:4_FBgn0259174:5;Name=Nedd4-in;Parent=FBtr0299642,FBtr0299645;parent_type=mRNA" - - - -	10757	17,531,508 – 17,531,583	+	6	75	73.56	-2.54	0.79	0.998632
7818	dm3.chr3L	17,531,508 – 17,531,583		10758	17,531,508 – 17,531,583	-	6	75	73.56	-1.70	0.71	0.986083
7819	dm3.chr3L	17,576,076 – 17,576,168	- - - - - - - -	10759	17,576,076 – 17,576,168	+	6	92	79.10	-2.94	0.58	0.986669
7819	dm3.chr3L	17,576,076 – 17,576,168	- - - - - - - -	10760	17,576,076 – 17,576,168	-	6	92	79.10	-2.37	0.60	0.935177
7820	dm3.chr3L	17,599,006 – 17,599,105	- - - intron="intron;ID=intron_FBgn0000567:10_FBgn0000567:9;Name=Eip74EF-in;Parent=FBtr0075202,FBtr0075203,FBtr0305796;parent_type=mRNA" - - - -	10761	17,599,006 – 17,599,105	-	7	109	89.34	-1.44	0.95	0.901229
7823	dm3.chr3L	17,624,551 – 17,624,652	- - - - - - - -	10765	17,624,551 – 17,624,652	-	6	112	73.53	-2.37	0.49	0.973199
7825	dm3.chr3L	17,628,034 – 17,628,193	- - - intron="intron;ID=intron_FBgn0036742:1_FBgn0036742:2;Name=CG7497-in;Parent=FBtr0300284;parent_type=mRNA" - - - -	10767	17,628,034 – 17,628,139	+	6	119	77.73	-2.02	0.61	0.935518
7825	dm3.chr3L	17,628,034 – 17,628,193		10768	17,628,034 – 17,628,139	-	6	119	77.73	-2.26	0.63	0.975874
7827	dm3.chr3L	17,645,479 – 17,645,545	- - - intron="intron;ID=intron_CG32179:1_CG32179:2;Name=Krn-in;Parent=FBtr0075197;parent_type=mRNA" - - - -	10771	17,645,479 – 17,645,545	-	7	76	72.75	-2.18	0.45	0.936172
7830	dm3.chr3L	17,666,853 – 17,666,946	- - CDS="CDS;ID=CDS_FBgn0085280:3_386;Name=CG34251-cds;Parent=FBtr0112445,FBtr0301012;parent_type=mRNA" - - - - -	10775	17,666,853 – 17,666,946	+	9	112	64.51	-1.26	0.46	0.923963
7832	dm3.chr3L	17,670,829 – 17,670,928	- - - intron="intron;ID=intron_FBgn0085280:4_FBgn0085280:5;Name=CG34251-in;Parent=FBtr0112445,FBtr0301012;parent_type=mRNA" - - - -	10778	17,670,829 – 17,670,928	+	7	117	73.70	-1.73	0.54	0.905162
7834	dm3.chr3L	17,678,535 – 17,678,662	- - - - - - - -	10781	17,678,535 – 17,678,631	-	6	104	72.76	-1.92	0.61	0.985742
7834	dm3.chr3L	17,678,535 – 17,678,662	- - - - - - - -	10783	17,678,558 – 17,678,662	-	4	113	80.06	-3.96	0.69	0.999307
7837	dm3.chr3L	17,699,272 – 17,699,368	- - - intron="intron;ID=intron_CG32183:1_CG32183:2;Name=Ccn-in;Parent=FBtr0075186;parent_type=mRNA" - - - -	10786	17,699,272 – 17,699,368	+	8	105	71.06	-2.62	0.60	0.999180
7837	dm3.chr3L	17,699,272 – 17,699,368		10787	17,699,272 – 17,699,368	-	8	105	71.06	-1.23	0.57	0.915331
7838	dm3.chr3L	17,703,379 – 17,703,477	- - - intron="intron;ID=intron_CG32183:1_CG32183:2;Name=Ccn-in;Parent=FBtr0075186;parent_type=mRNA" - - - -	10789	17,703,385 – 17,703,477	-	6	104	81.15	-2.38	0.67	0.965895
7839	dm3.chr3L	17,735,474 – 17,735,603	- - - intron="intron;ID=intron_CG32183:9_CG32183:10;Name=Ccn-in;Parent=FBtr0075186;parent_type=mRNA" - - - -	10790	17,735,474 – 17,735,571	-	4	102	73.53	-1.80	0.60	0.900048
7842	dm3.chr3L	17,765,881 – 17,766,064	- - - - - - - -	10796	17,765,920 – 17,766,028	+	5	108	95.09	-1.96	0.91	0.901663
7843	dm3.chr3L	17,773,162 – 17,773,269	- - - - - - - -	10798	17,773,162 – 17,773,269	+	8	111	72.29	-1.94	0.56	0.984328
7844	dm3.chr3L	17,774,341 – 17,774,437	- - - - - - - -	10800	17,774,341 – 17,774,437	-	7	115	80.00	-2.44	0.81	0.993389
7846	dm3.chr3L	17,795,351 – 17,795,405	- - - - - - - -	10802	17,795,351 – 17,795,405	-	5	54	63.33	-1.03	0.52	0.922864
7848	dm3.chr3L	17,826,622 – 17,826,678	- - CDS="CDS;ID=CDS_CG32188:1_291;Name=CG32188-cds;Parent=FBtr0075164;parent_type=mRNA" intron="intron;ID=intron_CG7446:3_CG7446:4;Name=Grd-in;Parent=FBtr0075139;parent_type=mRNA" - - - -	10804	17,826,622 – 17,826,678	+	3	56	67.86	-2.20	0.54	0.954499
7850	dm3.chr3L	17,853,804 – 17,853,894	- - - - - - - -	10806	17,853,804 – 17,853,894	+	4	91	93.19	-1.82	0.93	0.915091
7851	dm3.chr3L	17,854,655 – 17,854,736	- - - - - - - -	10807	17,854,655 – 17,854,736	-	5	82	68.20	-1.87	0.60	0.989911
7854	dm3.chr3L	17,892,263 – 17,892,366	- - - - - - - -	10810	17,892,263 – 17,892,362	-	9	118	69.99	-1.72	0.53	0.949681
7854	dm3.chr3L	17,892,263 – 17,892,366	- - - - - - - -	10811	17,892,263 – 17,892,366	-	9	118	69.48	-1.90	0.46	0.948911
7857	dm3.chr3L	17,921,480 – 17,921,575	- - - - - - - -	10814	17,921,480 – 17,921,575	+	7	102	73.57	-1.62	0.53	0.923764
7858	dm3.chr3L	17,932,028 – 17,932,117	- - - - - - - -	10815	17,932,028 – 17,932,117	+	6	97	86.69	-3.25	0.84	0.997148
7859	dm3.chr3L	17,936,405 – 17,936,462	- - - - - - - -	10816	17,936,405 – 17,936,462	+	5	60	74.57	-2.08	0.56	0.949969
7859	dm3.chr3L	17,936,405 – 17,936,462	- - - - - - - -	10817	17,936,405 – 17,936,462	-	5	60	74.57	-1.31	0.78	0.928901
7864	dm3.chr3L	17,975,622 – 17,975,723	- - - - - - - -	10823	17,975,622 – 17,975,720	-	4	121	54.79	-1.67	0.45	0.981301
7864	dm3.chr3L	17,975,622 – 17,975,723	- - - - - - - -	10824	17,975,625 – 17,975,723	-	6	120	58.96	-1.68	0.45	0.978404
7865	dm3.chr3L	17,977,213 – 17,977,306	- - - - - - - -	10825	17,977,213 – 17,977,306	-	5	111	67.56	-3.01	0.68	0.999511
7866	dm3.chr3L	17,987,178 – 17,987,243	- - - intron="intron;ID=intron_CG8127:7_CG8127:2;Name=Eip75B-in;Parent=FBtr0075149;parent_type=mRNA" - - - -	10826	17,987,178 – 17,987,243	+	5	72	88.98	-2.01	0.88	0.938713
7867	dm3.chr3L	17,991,897 – 17,991,999	- - CDS="CDS;ID=CDS_CG8127:7_296;Name=Eip75B-cds;Parent=FBtr0075149;parent_type=mRNA" - - - - -	10827	17,991,897 – 17,991,994	-	6	97	86.80	-2.30	0.81	0.970112
7867	dm3.chr3L	17,991,897 – 17,991,999		10828	17,991,903 – 17,991,999	-	7	99	79.02	-1.92	0.72	0.975439
7868	dm3.chr3L	17,999,064 – 17,999,119	- - - - - - - -	10829	17,999,064 – 17,999,119	-	7	55	91.17	-2.42	0.79	0.938703
7872	dm3.chr3L	18,030,289 – 18,030,381	- - - - - - - -	10833	18,030,289 – 18,030,381	-	7	114	68.24	-1.79	0.48	0.913917
7874	dm3.chr3L	18,056,637 – 18,056,760	- - - - - - - -	10836	18,056,637 – 18,056,760	-	4	143	61.19	-1.90	0.53	0.986091
7875	dm3.chr3L	18,059,033 – 18,059,083	- - - - - - - -	10837	18,059,033 – 18,059,083	+	7	65	67.98	-1.64	0.61	0.975656
7880	dm3.chr3L	18,091,125 – 18,091,256	- - - intron="intron;ID=intron_CG13698:2_CG13698:3;Name=CG13698-in;Parent=FBtr0075137;parent_type=mRNA" - - - -	10843	18,091,165 – 18,091,256	+	4	91	91.94	-2.45	0.90	0.977489
7881	dm3.chr3L	18,092,234 – 18,092,290	- - - intron="intron;ID=intron_CG13698:2_CG13698:3;Name=CG13698-in;Parent=FBtr0075137;parent_type=mRNA" - - - -	10844	18,092,234 – 18,092,290	+	8	58	77.25	-2.62	0.68	0.996734
7881	dm3.chr3L	18,092,234 – 18,092,290		10845	18,092,234 – 18,092,290	-	8	58	77.25	-1.87	0.64	0.955820
7883	dm3.chr3L	18,141,990 – 18,142,086	- - - - - - - -	10849	18,141,990 – 18,142,086	-	10	105	68.79	-1.42	0.44	0.925485
7884	dm3.chr3L	18,147,829 – 18,147,928	- - - - - - - -	10850	18,147,829 – 18,147,928	-	8	111	78.51	-1.77	0.70	0.938623
7887	dm3.chr3L	18,225,728 – 18,225,791	- - - - - - - -	10854	18,225,728 – 18,225,791	-	3	63	93.51	-1.69	0.98	0.939967
7893	dm3.chr3L	18,261,650 – 18,261,766	- - - - - - - -	10860	18,261,650 – 18,261,745	+	11	115	80.83	-2.68	0.47	0.912025
7893	dm3.chr3L	18,261,650 – 18,261,766	- - - - - - - -	10861	18,261,668 – 18,261,766	+	11	116	79.83	-3.57	0.55	0.998307
7894	dm3.chr3L	18,263,577 – 18,263,711	- - - - - - - -	10862	18,263,577 – 18,263,682	+	7	105	67.57	-3.16	0.31	0.995798
7894	dm3.chr3L	18,263,577 – 18,263,711	- - - - - - - -	10863	18,263,577 – 18,263,682	-	7	105	67.57	-2.42	0.40	0.992610
7896	dm3.chr3L	18,280,497 – 18,280,592	- - - - - - - -	10866	18,280,497 – 18,280,592	-	12	113	73.35	-2.39	0.71	0.998603
7898	dm3.chr3L	18,304,985 – 18,305,105	- - - - - - - -	10869	18,305,014 – 18,305,105	-	11	105	72.28	-1.57	0.47	0.914163
7901	dm3.chr3L	18,336,507 – 18,336,599	- - - - - - - -	10875	18,336,507 – 18,336,599	+	11	106	82.27	-2.75	0.70	0.994012
7902	dm3.chr3L	18,362,326 – 18,362,422	- - - - - - - -	10876	18,362,326 – 18,362,417	-	6	116	65.32	-1.63	0.45	0.920053
7902	dm3.chr3L	18,362,326 – 18,362,422	- - - - - - - -	10877	18,362,326 – 18,362,422	-	4	111	75.88	-1.52	0.82	0.923524
7910	dm3.chr3L	18,418,119 – 18,418,220	- - - - - - - -	10887	18,418,119 – 18,418,220	+	11	106	71.16	-1.69	0.53	0.979139
7911	dm3.chr3L	18,428,814 – 18,428,912	- - - - - - - -	10889	18,428,814 – 18,428,912	-	4	104	80.57	-2.77	0.61	0.965899
7913	dm3.chr3L	18,440,325 – 18,440,396	- - - - - - - -	10892	18,440,325 – 18,440,396	+	12	77	79.72	-1.39	0.80	0.936684
7913	dm3.chr3L	18,440,325 – 18,440,396	- - - - - - - -	10893	18,440,325 – 18,440,396	-	12	77	79.72	-2.06	0.58	0.939994
7914	dm3.chr3L	18,442,542 – 18,442,674	- - - - - - - -	10895	18,442,567 – 18,442,674	+	9	118	80.38	-2.12	0.68	0.960347
7915	dm3.chr3L	18,451,335 – 18,451,436	- - - - - - - -	10896	18,451,335 – 18,451,436	-	6	108	76.58	-2.71	0.51	0.987558
7917	dm3.chr3L	18,495,872 – 18,495,970	- - - - - - - -	10898	18,495,872 – 18,495,970	+	5	99	84.15	-2.11	0.78	0.947538
7920	dm3.chr3L	18,530,391 – 18,530,456	- - - - - - - -	10902	18,530,391 – 18,530,456	+	3	65	56.92	-0.97	0.77	0.977928
7920	dm3.chr3L	18,530,391 – 18,530,456	- - - - - - - -	10903	18,530,391 – 18,530,456	-	3	65	56.92	-1.26	0.55	0.951300
7923	dm3.chr3L	18,611,473 – 18,611,586	FBnoncoding="tRNA;ID=FBtr0075107;Name=tRNA:CR32200-RA;Parent=FBgn0052200;Alias=CR32200-RA;Dbxref=FlyBase_Annotation_IDs:CR32200-RA;score_text=Weakly" tRNAscann="Pro_chr3L_trna31" - - "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|3.1e-29" - - -	10907	18,611,473 – 18,611,586	-	12	115	80.79	-2.42	0.85	0.996310
7926	dm3.chr3L	18,641,220 – 18,641,300	- - - intron="intron;ID=intron_CG6896:2_CG6896:3;Name=MYPT-75D-in;Parent=FBtr0075049;parent_type=mRNA" - - - -	10910	18,641,220 – 18,641,300	+	10	80	80.49	-1.70	0.72	0.952565
7931	dm3.chr3L	18,695,266 – 18,695,356	- - - - - - - -	10917	18,695,266 – 18,695,356	+	8	107	77.86	-2.52	0.51	0.962456
7931	dm3.chr3L	18,695,266 – 18,695,356	- - - - - - - -	10918	18,695,266 – 18,695,356	-	8	107	77.86	-2.24	0.52	0.918531
7932	dm3.chr3L	18,714,710 – 18,714,813	- - - - - - - -	10919	18,714,710 – 18,714,813	-	6	104	78.53	-1.96	0.63	0.950006
7934	dm3.chr3L	18,721,330 – 18,721,426	- - - - - - - -	10921	18,721,330 – 18,721,426	+	5	96	86.15	-3.02	0.74	0.991065
7934	dm3.chr3L	18,721,330 – 18,721,426	- - - - - - - -	10922	18,721,330 – 18,721,426	-	5	96	86.15	-2.26	0.72	0.901586
7937	dm3.chr3L	18,729,757 – 18,729,885	- - - - - - - -	10925	18,729,757 – 18,729,863	+	6	118	69.42	-2.09	0.40	0.913304
7937	dm3.chr3L	18,729,757 – 18,729,885	- - - - - - - -	10927	18,729,789 – 18,729,885	+	5	118	70.85	-2.58	0.36	0.905535
7939	dm3.chr3L	18,751,925 – 18,752,030	- - - intron="intron;ID=intron_FBgn0001078:9_FBgn0001078:8;Name=ftz-f1-in;Parent=FBtr0075086;parent_type=mRNA" - - - -	10930	18,751,925 – 18,752,016	+	7	101	74.50	-2.43	0.62	0.995590
7939	dm3.chr3L	18,751,925 – 18,752,030		10931	18,751,939 – 18,752,030	+	6	100	87.71	-2.71	0.82	0.987119
7942	dm3.chr3L	18,813,810 – 18,813,910	- - - - - - - -	10935	18,813,810 – 18,813,910	+	6	108	69.42	-1.39	0.54	0.935420
7942	dm3.chr3L	18,813,810 – 18,813,910	- - - - - - - -	10936	18,813,810 – 18,813,910	-	6	108	69.42	-1.80	0.46	0.944832
7947	dm3.chr3L	18,853,924 – 18,854,008	- - - - - - - -	10941	18,853,924 – 18,854,008	-	10	93	59.19	-0.91	0.49	0.979068
7948	dm3.chr3L	18,854,076 – 18,854,130	FBnoncoding="pre_miRNA;ID=FBtr0304506;Name=mir-315-RM;Parent=FBgn0262461;Alias=CR43036-RM;Dbxref=FlyBase_Annotation_IDs:CR43036-RM,miRBase:MI0000427" - - - "Rfam_10.0=RF00717;mir-315;AASU01006755.1/588-667\|1.7e-19" - - "mirBase_v16=dme-mir-315\|2.3e-25"	10943	18,854,076 – 18,854,130	-	14	57	83.10	-1.76	0.81	0.970160
7949	dm3.chr3L	18,884,258 – 18,884,355	- - - - - - - -	10944	18,884,258 – 18,884,355	-	5	97	88.14	-2.19	0.82	0.939393
7950	dm3.chr3L	18,889,284 – 18,889,553	FBnoncoding="snoRNA;ID=FBtr0091666;Name=snoRNA:Psi28S-2566-RA;Parent=FBgn0086661;Alias=snoRNA:269-RA;Dbxref=FlyBase_Annotation_IDs:CR33686-RA,REFSEQ:NR_002489;score_text=Weakly" - - intron="intron;ID=intron_CG3902:2_CG3902:3;Name=CG3902-in;Parent=FBtr0075076;parent_type=mRNA" - "Noncode_2.0=n3518_u3146_AJ544016_snoRNA_Drosophila\|8e-100" "unique_Noncode_2.0=u3146_snoRNA_Drosophila\|7e-100" -	10946	18,889,387 – 18,889,488	-	12	119	75.13	-3.04	0.43	0.994041
7952	dm3.chr3L	18,908,606 – 18,908,697	- - - - - - - -	10949	18,908,606 – 18,908,697	+	9	100	66.88	-0.91	0.53	0.911518
7954	dm3.chr3L	18,937,722 – 18,937,827	- - - intron="intron;ID=intron_FBgn0052204:8_FBgn0052204:7;Name=CG32204-in;Parent=FBtr0113429;parent_type=mRNA" - - - -	10951	18,937,722 – 18,937,827	+	4	107	91.41	-2.45	0.88	0.972629
7955	dm3.chr3L	18,964,504 – 18,964,586	- - - - - - - -	10953	18,964,504 – 18,964,586	+	5	82	87.42	-1.79	0.88	0.919154
7957	dm3.chr3L	18,977,430 – 18,977,530	- - - - - - - -	10955	18,977,430 – 18,977,530	+	8	104	81.01	-2.70	0.49	0.938392
7957	dm3.chr3L	18,977,430 – 18,977,530	- - - - - - - -	10956	18,977,430 – 18,977,530	-	8	104	81.01	-3.14	0.56	0.993609
7958	dm3.chr3L	18,986,796 – 18,986,900	- - CDS="CDS;ID=CDS_CG18135:4_313;Name=CG18135-cds;Parent=FBtr0075044;parent_type=mRNA" - - - - -	10957	18,986,796 – 18,986,900	+	9	114	59.67	-1.59	0.36	0.962158
7962	dm3.chr3L	19,006,907 – 19,007,011	- - - intron="intron;ID=intron_CG11614:1_CG11614:2;Name=nkd-in;Parent=FBtr0075039;parent_type=mRNA" - - - -	10963	19,006,907 – 19,007,011	+	6	109	69.92	-1.51	0.52	0.921521
7963	dm3.chr3L	19,012,377 – 19,012,478	- - - intron="intron;ID=intron_CG11614:1_CG11614:2;Name=nkd-in;Parent=FBtr0075039;parent_type=mRNA" - - - -	10964	19,012,377 – 19,012,478	+	12	115	75.81	-2.17	0.52	0.970678
7967	dm3.chr3L	19,035,925 – 19,036,015	- - - intron="intron;ID=intron_CG11614:1_CG11614:2;Name=nkd-in;Parent=FBtr0075039;parent_type=mRNA" - - - -	10969	19,035,925 – 19,036,015	+	9	99	79.28	-2.64	0.79	0.996580
7968	dm3.chr3L	19,037,884 – 19,037,979	- - - - - - - -	10970	19,037,884 – 19,037,979	-	9	112	78.35	-1.90	0.61	0.912436
7970	dm3.chr3L	19,053,125 – 19,053,220	- - - - - - - -	10972	19,053,125 – 19,053,220	-	3	95	97.89	-1.86	1.00	0.961528
7975	dm3.chr3L	19,077,228 – 19,077,338	- - - - - - - -	10978	19,077,228 – 19,077,338	-	6	115	69.46	-2.19	0.60	0.996917
7976	dm3.chr3L	19,079,589 – 19,079,654	- - - - - - - -	10979	19,079,589 – 19,079,654	+	5	70	88.15	-2.77	0.72	0.958669
7976	dm3.chr3L	19,079,589 – 19,079,654	- - - - - - - -	10980	19,079,589 – 19,079,654	-	5	70	88.15	-2.59	0.79	0.969027
7977	dm3.chr3L	19,081,374 – 19,081,482	- - - - - - - -	10981	19,081,374 – 19,081,482	+	7	120	64.24	-2.30	0.41	0.991008
7979	dm3.chr3L	19,094,084 – 19,094,222	- - - - - - - -	10984	19,094,084 – 19,094,191	-	6	109	91.21	-2.55	0.76	0.924316
7980	dm3.chr3L	19,118,066 – 19,118,189	- - - - - - - -	10986	19,118,066 – 19,118,189	+	10	146	69.01	-1.56	0.46	0.931020
7980	dm3.chr3L	19,118,066 – 19,118,189	- - - - - - - -	10987	19,118,066 – 19,118,189	-	10	146	69.01	-1.78	0.52	0.987545
7988	dm3.chr3L	19,211,470 – 19,211,578	- - - intron="intron;ID=intron_FBgn0016797:9_FBgn0016797:8;Name=fz2-in;Parent=FBtr0299586;parent_type=mRNA" - - - -	10995	19,211,470 – 19,211,578	+	5	115	76.56	-1.97	0.88	0.988122
7990	dm3.chr3L	19,213,447 – 19,213,569	- - - intron="intron;ID=intron_FBgn0016797:9_FBgn0016797:8;Name=fz2-in;Parent=FBtr0299586;parent_type=mRNA" - - - -	10997	19,213,447 – 19,213,544	+	12	113	77.54	-2.13	0.58	0.977820
7990	dm3.chr3L	19,213,447 – 19,213,569		10998	19,213,468 – 19,213,569	+	9	105	84.14	-2.48	0.67	0.973961
7997	dm3.chr3L	19,309,098 – 19,309,249	- - - intron="intron;ID=intron_FBgn0003089:35_FBgn0003089:34;Name=pip-in;Parent=FBtr0075012,FBtr0075013,FBtr0075003,FBtr0075004,FBtr0075005,FBtr0075006,FBtr0075007,FBtr0075008,FBtr0075009,FBtr0075010,FBtr0075011,FBtr0300340;parent_type=mRNA" - - - -	11006	19,309,098 – 19,309,215	+	6	120	75.80	-2.64	0.47	0.979026
8000	dm3.chr3L	19,322,628 – 19,322,701	- - - intron="intron;ID=intron_FBgn0003089:36_FBgn0003089:35;Name=pip-in;Parent=FBtr0075012,FBtr0075013,FBtr0075003,FBtr0075004,FBtr0075005,FBtr0075006,FBtr0075007,FBtr0075008,FBtr0075009,FBtr0075010,FBtr0075011,FBtr0300340;parent_type=mRNA" - - - -	11010	19,322,628 – 19,322,701	+	11	77	86.47	-2.69	0.88	0.995274
8001	dm3.chr3L	19,333,070 – 19,333,162	- - - - - - - -	11012	19,333,070 – 19,333,162	+	6	93	76.38	-1.51	0.67	0.912445
8003	dm3.chr3L	19,344,628 – 19,344,721	- - - intron="intron;ID=intron_FBgn0052206:5_FBgn0052206:4;Name=CG32206-in;Parent=FBtr0089796;parent_type=mRNA" - - - -	11014	19,344,628 – 19,344,721	+	10	111	73.91	-1.93	0.56	0.978198
8012	dm3.chr3L	19,426,243 – 19,426,400	- - - - - - - -	11025	19,426,243 – 19,426,400	+	8	171	65.14	-2.73	0.25	0.952338
8013	dm3.chr3L	19,428,907 – 19,429,001	- - - - - - - -	11026	19,428,907 – 19,429,001	-	9	117	70.54	-3.32	0.23	0.950583
8014	dm3.chr3L	19,435,638 – 19,435,744	- - - intron="intron;ID=intron_FBgn0053062:4_FBgn0053062:2;Name=CG33062-in;Parent=FBtr0302886;parent_type=mRNA" - - - -	11027	19,435,638 – 19,435,744	-	12	115	75.66	-1.63	0.54	0.909487
8015	dm3.chr3L	19,435,806 – 19,436,032	- - - intron="intron;ID=intron_FBgn0053062:4_FBgn0053062:2;Name=CG33062-in;Parent=FBtr0302886;parent_type=mRNA" - - - -	11031	19,435,923 – 19,436,032	+	9	128	71.71	-2.28	0.57	0.995369
8017	dm3.chr3L	19,455,932 – 19,456,072	- - - - - - - -	11034	19,455,932 – 19,456,072	-	11	159	73.57	-1.50	0.59	0.962252
8019	dm3.chr3L	19,482,488 – 19,482,632	- - - - - - - -	11036	19,482,488 – 19,482,632	+	5	144	68.92	-2.06	0.43	0.956775
8022	dm3.chr3L	19,514,504 – 19,514,638	- - - intron="intron;ID=intron_FBgn0036880:1_FBgn0036880:2;Name=Cpr76Bc-in;Parent=FBtr0113180;parent_type=mRNA" - - - -	11040	19,514,504 – 19,514,638	+	10	139	57.14	-1.75	0.34	0.985313
8022	dm3.chr3L	19,514,504 – 19,514,638		11041	19,514,504 – 19,514,638	-	10	139	57.14	-1.84	0.33	0.986951
8023	dm3.chr3L	19,525,787 – 19,525,881	- - - - - - - -	11043	19,525,787 – 19,525,881	-	8	98	86.83	-1.93	0.82	0.938294
8028	dm3.chr3L	19,557,544 – 19,557,635	- - - - - - - -	11049	19,557,544 – 19,557,635	-	7	97	69.34	-1.69	0.53	0.948592
8029	dm3.chr3L	19,558,233 – 19,558,321	FBnoncoding="pre_miRNA;ID=FBtr0304196;Name=mir-9a-RM;Parent=FBgn0262373;Alias=CR42891-RM;Dbxref=FlyBase_Annotation_IDs:CR42891-RM,miRBase:MI0000129" - - - "Rfam_10.0=RF00237;mir-9;AAPU01011594.1/225819-225879\|1.4e-27" "Noncode_2.0=n178691_u177789_NW_045815_miRNA_Anopheles\|1.9e-14" "unique_Noncode_2.0=u177789_miRNA_Anopheles\|1.7e-14" "mirBase_v16=dya-mir-9a-2\|1.2e-37"	11050	19,558,233 – 19,558,321	+	15	105	86.26	-3.59	0.76	0.998537
8029	dm3.chr3L	19,558,233 – 19,558,321		11051	19,558,233 – 19,558,321	-	15	105	86.26	-2.89	0.82	0.995658
8030	dm3.chr3L	19,560,141 – 19,560,236	- - - - - - - -	11052	19,560,141 – 19,560,236	+	11	111	68.48	-0.99	0.58	0.904935
8033	dm3.chr3L	19,570,111 – 19,570,167	- - - intron="intron;ID=intron_FBgn0005564:8_FBgn0005564:7;Name=Shal-in;Parent=FBtr0074973,FBtr0112853;parent_type=mRNA" - - - -	11055	19,570,111 – 19,570,167	+	6	56	64.01	-1.85	0.38	0.953579
8037	dm3.chr3L	19,648,387 – 19,648,494	- - - intron="intron;ID=intron_FBgn0036899:9_FBgn0036899:8;Name=tey-in;Parent=FBtr0074960,FBtr0273407;parent_type=mRNA" - - - -	11060	19,648,390 – 19,648,494	+	8	111	82.79	-2.47	0.63	0.967630
8039	dm3.chr3L	19,667,849 – 19,668,043	- - - - - - - -	11062	19,667,849 – 19,667,914	-	6	82	66.52	-1.43	0.83	0.993383
				11063	19,667,914 – 19,668,043	+	8	132	85.01	-2.30	0.81	0.981817
				11064	19,667,914 – 19,668,043	-	8	132	85.01	-2.47	0.85	0.991388
8042	dm3.chr3L	19,711,209 – 19,711,301	- - - - - - - -	11067	19,711,209 – 19,711,301	+	12	112	67.55	-0.87	0.56	0.904689
8042	dm3.chr3L	19,711,209 – 19,711,301	- - - - - - - -	11068	19,711,209 – 19,711,301	-	12	112	67.55	-2.89	0.44	0.999272
8046	dm3.chr3L	19,742,626 – 19,742,731	- - - - - - - -	11072	19,742,626 – 19,742,719	+	12	113	66.48	-0.78	0.58	0.917248
				11073	19,742,626 – 19,742,719	-	12	113	66.48	-2.61	0.46	0.999006
				11074	19,742,638 – 19,742,731	-	12	113	64.93	-1.42	0.45	0.950466
8051	dm3.chr3L	19,777,122 – 19,777,312	- - - intron="intron;ID=intron_FBgn0261360:17_FBgn0261360:16;Name=CG42637-in;Parent=FBtr0302277,FBtr0302278,FBtr0302279;parent_type=mRNA" - - - -	11079	19,777,122 – 19,777,239	+	5	118	82.29	-1.90	0.76	0.905363
8054	dm3.chr3L	19,813,528 – 19,813,589	- - - intron="intron;ID=intron_CG8567:2_CG8567:3;Name=Deaf1-in;Parent=FBtr0074882;parent_type=mRNA" - - - -	11085	19,813,528 – 19,813,589	-	3	69	61.08	-2.56	0.35	0.938187
8056	dm3.chr3L	19,836,531 – 19,836,640	- - - - - - - -	11087	19,836,531 – 19,836,640	-	6	109	84.46	-1.62	0.88	0.936941
8057	dm3.chr3L	19,850,295 – 19,850,368	- - - intron="intron;ID=intron_FBgn0020389:7_FBgn0020389:8;Name=Papss-in;Parent=FBtr0111108;parent_type=mRNA" - - - -	11088	19,850,295 – 19,850,368	+	3	73	57.35	-0.97	0.76	0.960556
8057	dm3.chr3L	19,850,295 – 19,850,368		11089	19,850,295 – 19,850,368	-	3	73	57.35	-1.30	0.56	0.929486
8059	dm3.chr3L	19,865,819 – 19,865,912	- - - - - - - -	11091	19,865,819 – 19,865,912	-	8	117	70.92	-2.70	0.33	0.904022
8061	dm3.chr3L	19,895,773 – 19,895,875	- - - intron="intron;ID=intron_FBgn0014037:6_FBgn0014037:5;Name=Su(Tpl)-in;Parent=FBtr0074920;parent_type=mRNA" - - - -	11094	19,895,773 – 19,895,875	-	5	104	91.26	-2.33	0.97	0.989800
8062	dm3.chr3L	19,896,702 – 19,896,801	- - - intron="intron;ID=intron_FBgn0014037:6_FBgn0014037:5;Name=Su(Tpl)-in;Parent=FBtr0074920;parent_type=mRNA" - - - -	11096	19,896,702 – 19,896,801	-	6	119	81.05	-2.07	0.68	0.913070
8073	dm3.chr3L	20,040,873 – 20,041,010	- - - - - - - -	11111	20,040,907 – 20,041,010	-	7	106	65.07	-1.61	0.48	0.983635
8076	dm3.chr3L	20,082,345 – 20,082,421	- - - - - - - -	11116	20,082,345 – 20,082,421	-	6	76	67.63	-1.40	0.52	0.965187
8079	dm3.chr3L	20,094,380 – 20,094,479	- - CDS="CDS;ID=CDS_CG14186:2_320;Name=CG14186-cds;Parent=FBtr0074870;parent_type=mRNA" - - - - -	11120	20,094,380 – 20,094,479	+	8	111	69.81	-1.04	0.62	0.940521
8080	dm3.chr3L	20,097,291 – 20,097,422	- - - - - - - -	11123	20,097,322 – 20,097,422	-	7	116	61.84	-1.35	0.46	0.945994
8091	dm3.chr3L	20,156,425 – 20,156,530	- - CDS="CDS;ID=CDS_FBgn0261556:13_432;Name=CG42674-cds;Parent=FBtr0302712;parent_type=mRNA" - - - - -	11136	20,156,425 – 20,156,530	-	9	111	72.51	-2.11	0.45	0.964265
8095	dm3.chr3L	20,163,688 – 20,163,752	- - - - - - - -	11140	20,163,688 – 20,163,752	+	9	66	90.06	-2.57	0.83	0.981425
8096	dm3.chr3L	20,166,712 – 20,166,829	- - - - - - - -	11141	20,166,712 – 20,166,829	+	3	117	76.47	-3.42	0.76	0.998115
8096	dm3.chr3L	20,166,712 – 20,166,829	- - - - - - - -	11142	20,166,712 – 20,166,829	-	3	117	76.47	-3.55	0.75	0.998458
8098	dm3.chr3L	20,189,477 – 20,189,594	- - - intron="intron;ID=intron_FBgn0261556:15_FBgn0261556:14;Name=CG42674-in;Parent=FBtr0302716;parent_type=mRNA" - - - -	11144	20,189,477 – 20,189,571	-	6	108	75.76	-2.09	0.61	0.964214
8098	dm3.chr3L	20,189,477 – 20,189,594		11145	20,189,502 – 20,189,594	-	6	104	74.84	-2.40	0.55	0.982622
8099	dm3.chr3L	20,191,553 – 20,191,626	- - - - - - - -	11146	20,191,553 – 20,191,626	+	4	84	63.54	-2.23	0.46	0.988166
8103	dm3.chr3L	20,243,455 – 20,243,623	- - - - - - - -	11150	20,243,455 – 20,243,573	+	5	118	92.27	-2.48	0.79	0.911770
8104	dm3.chr3L	20,244,580 – 20,244,671	- - - - - - - -	11152	20,244,580 – 20,244,671	-	8	104	73.78	-2.02	0.53	0.954607
8107	dm3.chr3L	20,269,251 – 20,269,348	- - - intron="intron;ID=intron_CG32227:4_CG32227:5;Name=gogo-in;Parent=FBtr0074848;parent_type=mRNA" - - - -	11155	20,269,251 – 20,269,348	-	6	113	55.99	-1.89	0.49	0.998614
8112	dm3.chr3L	20,303,628 – 20,303,751	- - - intron="intron;ID=intron_CG12306:1_CG12306:2;Name=polo-in;Parent=FBtr0074839,FBtr0100318;parent_type=mRNA" - - - -	11162	20,303,628 – 20,303,751	+	7	129	61.69	-2.76	0.21	0.924341
8120	dm3.chr3L	20,388,690 – 20,388,789	- - - - - - - -	11173	20,388,690 – 20,388,789	-	5	103	79.78	-2.36	0.81	0.990353
8125	dm3.chr3L	20,426,864 – 20,426,979	- - CDS="CDS;ID=CDS_FBgn0019947:5_363;Name=Psn-cds;Parent=FBtr0114517;parent_type=mRNA" - - - - -	11178	20,426,864 – 20,426,979	+	15	119	73.65	-1.27	0.55	0.940642
8126	dm3.chr3L	20,430,232 – 20,430,330	- - - intron="intron;ID=intron_CG5872:2_CG5872:3;Name=CG5872-in;Parent=FBtr0078194;parent_type=mRNA" - - - -	11179	20,430,232 – 20,430,330	+	5	121	63.59	-2.65	0.55	0.999111
8126	dm3.chr3L	20,430,232 – 20,430,330		11180	20,430,232 – 20,430,330	-	5	121	63.59	-2.57	0.53	0.998644
8128	dm3.chr3L	20,471,187 – 20,471,258	- - - - - - - -	11183	20,471,187 – 20,471,258	-	4	87	50.59	-1.23	0.40	0.924008
8129	dm3.chr3L	20,484,761 – 20,484,818	- - - intron="intron;ID=intron_CG5130:5_CG5130:2;Name=CG5130-in;Parent=FBtr0078221;parent_type=mRNA" - - - -	11185	20,484,761 – 20,484,818	-	6	60	70.27	-1.80	0.43	0.912846
8132	dm3.chr3L	20,492,393 – 20,492,488	- - - intron="intron;ID=intron_FBgn0052425:3_FBgn0052425:7;Name=CG32425-in;Parent=FBtr0113436;parent_type=mRNA" - - - -	11188	20,492,393 – 20,492,488	-	3	95	67.03	-1.60	0.69	0.931086
8135	dm3.chr3L	20,503,882 – 20,503,980	- - - intron="intron;ID=intron_FBgn0052425:6_FBgn0052425:9;Name=CG32425-in;Parent=FBtr0078203,FBtr0078205;parent_type=mRNA" - - - -	11191	20,503,882 – 20,503,980	+	6	102	93.62	-3.16	0.85	0.991532
8135	dm3.chr3L	20,503,882 – 20,503,980		11192	20,503,882 – 20,503,980	-	6	102	93.62	-3.29	0.90	0.996034
8140	dm3.chr3L	20,543,509 – 20,543,624	- - - - - - - -	11199	20,543,509 – 20,543,624	+	11	117	84.03	-2.22	0.67	0.948655
8140	dm3.chr3L	20,543,509 – 20,543,624	- - - - - - - -	11200	20,543,509 – 20,543,624	-	11	117	84.03	-2.27	0.68	0.960776
8143	dm3.chr3L	20,555,487 – 20,555,579	- - - - - - - -	11203	20,555,487 – 20,555,579	+	5	92	91.41	-2.62	0.86	0.978010
8144	dm3.chr3L	20,566,512 – 20,566,584	- - - - - - - -	11204	20,566,512 – 20,566,584	-	7	88	84.54	-1.90	0.93	0.977030
8145	dm3.chr3L	20,567,512 – 20,567,611	- - - - - - - -	11206	20,567,512 – 20,567,611	-	6	106	72.40	-3.16	0.48	0.998394
8147	dm3.chr3L	20,583,461 – 20,583,561	- - - - - - - -	11209	20,583,461 – 20,583,556	+	9	112	51.98	-1.42	0.31	0.933384
8147	dm3.chr3L	20,583,461 – 20,583,561	- - - - - - - -	11210	20,583,461 – 20,583,561	+	9	104	51.74	-1.31	0.31	0.932027
8149	dm3.chr3L	20,592,814 – 20,592,920	- - CDS="CDS;ID=CDS_CG4761:4_303;Name=knrl-cds;Parent=FBtr0078212;parent_type=mRNA" - - - - -	11212	20,592,814 – 20,592,920	+	10	109	87.39	-2.42	0.74	0.965614
8154	dm3.chr3L	20,637,021 – 20,637,119	- - - - - - - -	11218	20,637,021 – 20,637,119	-	12	113	69.71	-1.65	0.43	0.905341
8157	dm3.chr3L	20,667,050 – 20,667,142	- - - - - - - -	11222	20,667,050 – 20,667,142	+	6	101	70.79	-2.26	0.39	0.902363
8160	dm3.chr3L	20,681,647 – 20,681,745	- - - - - - - -	11225	20,681,647 – 20,681,745	-	6	112	85.59	-2.60	0.74	0.974555
8161	dm3.chr3L	20,687,202 – 20,687,317	- - - intron="intron;ID=intron_CG4717:2_CG4717:3;Name=kni-in;Parent=FBtr0078283;parent_type=mRNA" - - - -	11226	20,687,202 – 20,687,317	-	5	142	59.27	-2.02	0.44	0.994139
8167	dm3.chr3L	20,708,714 – 20,708,830	- - - - - - - -	11234	20,708,735 – 20,708,830	-	12	115	64.27	-0.51	0.71	0.974732
8169	dm3.chr3L	20,723,584 – 20,723,649	- - - - - - - -	11236	20,723,584 – 20,723,649	+	3	65	94.87	-2.93	0.88	0.984297
8171	dm3.chr3L	20,738,474 – 20,738,570	- - - - - - - -	11238	20,738,474 – 20,738,570	-	8	97	77.11	-1.20	0.75	0.902565
8173	dm3.chr3L	20,743,577 – 20,743,671	- - - - - - - -	11241	20,743,577 – 20,743,671	+	7	127	62.97	-2.37	0.40	0.989767
8173	dm3.chr3L	20,743,577 – 20,743,671	- - - - - - - -	11242	20,743,577 – 20,743,671	-	7	127	62.97	-2.59	0.33	0.979694
8176	dm3.chr3L	20,753,892 – 20,753,944	- - - - - - - -	11245	20,753,892 – 20,753,944	+	7	54	84.15	-2.62	0.66	0.975096
8179	dm3.chr3L	20,765,693 – 20,765,784	- - - - - - - -	11248	20,765,693 – 20,765,784	+	3	91	98.53	-1.80	1.00	0.952226
8181	dm3.chr3L	20,782,553 – 20,782,665	- - - intron="intron;ID=intron_CG3871:3_CG3871:4;Name=Six4-in;Parent=FBtr0078274,FBtr0078275;parent_type=mRNA" - - - -	11250	20,782,553 – 20,782,665	-	5	112	76.74	-1.66	0.79	0.940608
8183	dm3.chr3L	20,817,905 – 20,818,020	- - - intron="intron;ID=intron_FBgn0259243:7_FBgn0259243:12;Name=Pka-R1-in;Parent=FBtr0302640,FBtr0300532;parent_type=mRNA" - - - -	11252	20,817,905 – 20,818,020	+	6	116	66.30	-1.05	0.58	0.948303
8187	dm3.chr3L	20,849,951 – 20,850,068	- - - intron="intron;ID=intron_CG32432:3_CG32432:4;Name=CG32432-in;Parent=FBtr0078268;parent_type=mRNA" - - - -	11256	20,849,951 – 20,850,068	+	6	117	81.31	-2.83	0.54	0.976856
8188	dm3.chr3L	20,851,832 – 20,851,923	- - - intron="intron;ID=intron_CG32432:3_CG32432:4;Name=CG32432-in;Parent=FBtr0078268;parent_type=mRNA" - - - -	11257	20,851,832 – 20,851,923	-	9	109	66.50	-2.10	0.51	0.997094
8190	dm3.chr3L	20,855,220 – 20,855,270	- - - intron="intron;ID=intron_CG32432:2_CG32432:3;Name=CG32432-in;Parent=FBtr0078268;parent_type=mRNA" - - - -	11259	20,855,220 – 20,855,270	+	5	52	95.67	-2.69	0.98	0.993733
8192	dm3.chr3L	20,895,071 – 20,895,175	- - - - - - - -	11261	20,895,071 – 20,895,175	-	4	104	87.09	-2.65	0.82	0.979977
8194	dm3.chr3L	20,901,244 – 20,901,346	- - - - - - - -	11263	20,901,244 – 20,901,346	+	8	110	75.85	-1.74	0.67	0.957234
8198	dm3.chr3L	20,933,554 – 20,933,643	- - - intron="intron;ID=intron_CG10580:2_CG10580:3;Name=fng-in;Parent=FBtr0078267;parent_type=mRNA" - - - -	11267	20,933,554 – 20,933,643	-	6	90	63.26	-1.91	0.34	0.950132
8199	dm3.chr3L	20,970,747 – 20,970,874	- - - - - - - -	11268	20,970,747 – 20,970,840	+	6	95	75.45	-2.11	0.56	0.968257
8199	dm3.chr3L	20,970,747 – 20,970,874	- - - - - - - -	11269	20,970,747 – 20,970,840	-	6	95	75.45	-2.31	0.60	0.989671
8211	dm3.chr3L	21,050,214 – 21,050,271	- - - intron="intron;ID=intron_FBgn0026179:2_FBgn0026179:6;Name=siz-in;Parent=FBtr0301602;parent_type=mRNA" - - - -	11286	21,050,214 – 21,050,271	+	4	62	59.60	-2.32	0.39	0.986324
8211	dm3.chr3L	21,050,214 – 21,050,271		11287	21,050,214 – 21,050,271	-	4	62	59.60	-1.71	0.44	0.954085
8213	dm3.chr3L	21,052,788 – 21,052,928	- - - intron="intron;ID=intron_FBgn0026179:3_FBgn0026179:4;Name=siz-in;Parent=FBtr0078290;parent_type=mRNA" - - - -	11289	21,052,788 – 21,052,899	-	6	111	73.48	-2.59	0.58	0.997785
8213	dm3.chr3L	21,052,788 – 21,052,928		11290	21,052,826 – 21,052,928	-	6	105	72.56	-1.82	0.55	0.955257
8215	dm3.chr3L	21,056,489 – 21,056,641	- - - intron="intron;ID=intron_FBgn0026179:3_FBgn0026179:4;Name=siz-in;Parent=FBtr0078290;parent_type=mRNA" - - - -	11293	21,056,489 – 21,056,601	+	5	120	91.67	-2.71	0.85	0.980108
8215	dm3.chr3L	21,056,489 – 21,056,641		11294	21,056,521 – 21,056,641	+	5	120	94.42	-2.35	0.87	0.938190
8219	dm3.chr3L	21,065,283 – 21,065,391	- - CDS="CDS;ID=CDS_FBgn0026179:8_322;Name=siz-cds;Parent=FBtr0111038;parent_type=mRNA" - - - - -	11298	21,065,283 – 21,065,391	-	7	114	60.31	-1.01	0.45	0.923875
8231	dm3.chr3L	21,180,903 – 21,180,954	- - - intron="intron;ID=intron_FBgn0259239:5_FBgn0259239:4;Name=CG42337-in;Parent=FBtr0299857,FBtr0305981;parent_type=mRNA" - - - -	11311	21,180,903 – 21,180,954	+	6	57	77.36	-2.47	0.72	0.993875
8231	dm3.chr3L	21,180,903 – 21,180,954		11312	21,180,903 – 21,180,954	-	6	57	77.36	-3.66	0.54	0.998875
8234	dm3.chr3L	21,209,359 – 21,209,510	- - - - - - - -	11317	21,209,359 – 21,209,510	+	6	157	63.85	-1.99	0.49	0.993459
8235	dm3.chr3L	21,213,799 – 21,213,933	- - CDS="CDS;ID=CDS_FBgn0262855:1_472;Name=CG43219-cds;Parent=FBtr0306161;parent_type=mRNA" - - - - -	11319	21,213,839 – 21,213,933	-	8	119	75.46	-2.18	0.71	0.990625
8236	dm3.chr3L	21,220,816 – 21,220,913	- - CDS="CDS;ID=CDS_FBgn0004865:4_489;Name=Eip78C-cds;Parent=FBtr0306158;parent_type=mRNA" - - - - -	11320	21,220,816 – 21,220,913	+	13	117	77.84	-2.41	0.55	0.976556
8238	dm3.chr3L	21,227,827 – 21,227,926	- - - intron="intron;ID=intron_FBgn0004865:6_FBgn0004865:8;Name=Eip78C-in;Parent=FBtr0078306,FBtr0306157,FBtr0306158;parent_type=mRNA" - - - -	11322	21,227,827 – 21,227,926	+	5	104	72.15	-2.23	0.47	0.952615
8241	dm3.chr3L	21,244,736 – 21,244,827	- - - intron="intron;ID=intron_FBgn0004865:7_FBgn0004865:8;Name=Eip78C-in;Parent=FBtr0078307,FBtr0078308;parent_type=mRNA" - - - -	11325	21,244,736 – 21,244,827	+	7	99	82.73	-2.38	0.59	0.922411
8245	dm3.chr3L	21,308,605 – 21,308,731	- - - - - - - -	11329	21,308,605 – 21,308,731	-	9	141	71.27	-2.25	0.48	0.991487
8248	dm3.chr3L	21,350,196 – 21,350,297	- - - - - - - -	11332	21,350,196 – 21,350,297	-	7	106	63.62	-2.07	0.30	0.939410
8249	dm3.chr3L	21,384,038 – 21,384,136	- - - intron="intron;ID=intron_CG6014:1_CG6014:2;Name=rgn-in;Parent=FBtr0078346;parent_type=mRNA" - - - -	11333	21,384,038 – 21,384,136	+	5	106	57.32	-2.19	0.34	0.986278
8252	dm3.chr3L	21,393,877 – 21,393,981	- - - intron="intron;ID=intron_CG6014:1_CG6014:2;Name=rgn-in;Parent=FBtr0078346;parent_type=mRNA" - - - -	11337	21,393,877 – 21,393,981	+	5	105	60.91	-1.00	0.49	0.913858
8258	dm3.chr3L	21,446,631 – 21,446,732	- - - - - - - -	11343	21,446,631 – 21,446,732	+	6	114	80.06	-2.27	0.70	0.974440
8260	dm3.chr3L	21,457,517 – 21,457,672	- - - - - - - -	11345	21,457,517 – 21,457,636	+	9	119	85.69	-2.02	0.84	0.961955
				11346	21,457,556 – 21,457,672	+	8	120	94.84	-3.69	0.94	0.998162
				11347	21,457,556 – 21,457,672	-	8	120	94.84	-2.20	0.91	0.952513
8267	dm3.chr3L	21,547,112 – 21,547,257	- - CDS="CDS;ID=CDS_FBgn0037098:12_470;Name=Wnk-cds;Parent=FBtr0078381;parent_type=mRNA" - - - - -	11358	21,547,137 – 21,547,257	+	12	120	90.16	-2.92	0.80	0.988952
8267	dm3.chr3L	21,547,112 – 21,547,257		11359	21,547,137 – 21,547,257	-	12	120	90.16	-2.54	0.82	0.975735
8269	dm3.chr3L	21,548,020 – 21,548,127	- - - - - - - -	11362	21,548,020 – 21,548,127	-	5	107	97.01	-2.45	0.97	0.986091
8274	dm3.chr3L	21,585,148 – 21,585,373	- - - - - - - -	11369	21,585,177 – 21,585,272	-	8	110	65.18	-0.87	0.63	0.952381
8275	dm3.chr3L	21,593,498 – 21,593,598	- - - intron="intron;ID=intron_CG7807:1_CG7807:2;Name=AP-2-in;Parent=FBtr0078418;parent_type=mRNA" - - - -	11371	21,593,498 – 21,593,598	-	6	107	59.03	-1.58	0.40	0.977007
8276	dm3.chr3L	21,594,778 – 21,594,948	- - - intron="intron;ID=intron_CG7807:1_CG7807:2;Name=AP-2-in;Parent=FBtr0078418;parent_type=mRNA" - - - -	11372	21,594,778 – 21,594,948	+	5	170	93.38	-2.39	0.90	0.969799
8276	dm3.chr3L	21,594,778 – 21,594,948		11373	21,594,778 – 21,594,948	-	5	170	93.38	-2.62	0.93	0.988782
8277	dm3.chr3L	21,595,880 – 21,595,970	- - - intron="intron;ID=intron_CG7807:1_CG7807:2;Name=AP-2-in;Parent=FBtr0078418;parent_type=mRNA" - - - -	11374	21,595,880 – 21,595,970	+	6	100	59.60	-1.78	0.46	0.992612
8277	dm3.chr3L	21,595,880 – 21,595,970		11375	21,595,880 – 21,595,970	-	6	100	59.60	-2.56	0.51	0.999671
8278	dm3.chr3L	21,599,313 – 21,599,410	- - - intron="intron;ID=intron_CG7807:1_CG7807:2;Name=AP-2-in;Parent=FBtr0078418;parent_type=mRNA" - - - -	11376	21,599,313 – 21,599,410	+	7	97	84.05	-2.32	0.69	0.939031
8278	dm3.chr3L	21,599,313 – 21,599,410		11377	21,599,313 – 21,599,410	-	7	97	84.05	-2.53	0.65	0.951594
8279	dm3.chr3L	21,606,281 – 21,606,375	- - - - - - - -	11378	21,606,281 – 21,606,375	+	6	94	78.16	-2.32	0.53	0.953269
8281	dm3.chr3L	21,646,060 – 21,646,154	- - - intron="intron;ID=intron_CG33291:9_CG33291:2;Name=CG33291-in;Parent=FBtr0078427;parent_type=mRNA" - - - -	11380	21,646,060 – 21,646,152	+	6	100	67.68	-1.91	0.41	0.912078
8281	dm3.chr3L	21,646,060 – 21,646,154		11381	21,646,062 – 21,646,154	+	6	100	67.33	-2.29	0.40	0.973932
8282	dm3.chr3L	21,656,196 – 21,656,283	- - CDS="CDS;ID=CDS_CG33291:3_325;Name=CG33291-cds;Parent=FBtr0078427;parent_type=mRNA" - - - - -	11382	21,656,196 – 21,656,283	+	7	93	73.07	-2.21	0.45	0.967656
8282	dm3.chr3L	21,656,196 – 21,656,283		11383	21,656,196 – 21,656,283	-	7	93	73.07	-1.97	0.44	0.914406
8284	dm3.chr3L	21,661,785 – 21,661,904	FBnoncoding="pre_miRNA;ID=FBtr0304355;Name=mir-316-RM;Parent=FBgn0262417;Alias=CR42965-RM;Dbxref=FlyBase_Annotation_IDs:CR42965-RM,miRBase:MI0000428" - - - "Rfam_10.0=RF00814;mir-316;AANI01017487.1/102971-103058\|1.3e-25" - - "mirBase_v16=dme-mir-316\|7.6e-46"	11386	21,661,785 – 21,661,886	-	11	111	79.87	-1.55	0.84	0.961672
				11387	21,661,806 – 21,661,904	+	12	116	85.53	-2.13	0.85	0.977079
				11388	21,661,806 – 21,661,904	-	12	116	85.53	-4.11	0.99	0.998955
8286	dm3.chr3L	21,686,142 – 21,686,234	- - - - - - - -	11390	21,686,142 – 21,686,234	+	5	109	77.64	-1.91	0.74	0.967386
8287	dm3.chr3L	21,696,373 – 21,696,464	- - - intron="intron;ID=intron_CG32447:1_CG32447:2;Name=CG32447-in;Parent=FBtr0078460;parent_type=mRNA" - - - -	11391	21,696,373 – 21,696,464	-	8	99	66.82	-2.00	0.36	0.925842
8293	dm3.chr3L	21,783,005 – 21,783,103	- - - - - - - -	11397	21,783,005 – 21,783,103	+	11	99	86.70	-2.36	0.74	0.962107
8294	dm3.chr3L	21,784,877 – 21,784,984	- - - - - - - -	11398	21,784,877 – 21,784,984	+	12	121	91.54	-2.08	0.96	0.981460
8298	dm3.chr3L	21,818,328 – 21,818,431	- - CDS="CDS;ID=CDS_FBgn0037135:3_448;Name=CG7414-cds;Parent=FBtr0078441,FBtr0303245;parent_type=mRNA" - - - - -	11402	21,818,328 – 21,818,431	+	12	107	73.84	-1.19	0.60	0.917719
8301	dm3.chr3L	21,844,771 – 21,844,867	- - - intron="intron;ID=intron_FBgn0014362:1_FBgn0014362:2;Name=mub-in;Parent=FBtr0304980,FBtr0304981,FBtr0304982;parent_type=mRNA" - - - -	11406	21,844,771 – 21,844,867	-	5	101	57.99	-0.94	0.55	0.970683
8302	dm3.chr3L	21,846,415 – 21,846,514	- - - intron="intron;ID=intron_FBgn0014362:1_FBgn0014362:2;Name=mub-in;Parent=FBtr0304980,FBtr0304981,FBtr0304982;parent_type=mRNA" - - - -	11407	21,846,415 – 21,846,514	+	5	100	78.97	-2.64	0.63	0.987963
8303	dm3.chr3L	21,847,194 – 21,847,269	FBnoncoding="tRNA;ID=FBtr0078490;Name=tRNA:CR32449-RA;Parent=FBgn0052449;Alias=CR32449-RA;Dbxref=FlyBase_Annotation_IDs:CR32449-RA;score_text=Weakly" tRNAscann="Cys_chr3L_trna34" - intron="intron;ID=intron_FBgn0014362:1_FBgn0014362:2;Name=mub-in;Parent=FBtr0304980,FBtr0304981,FBtr0304982;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010216966.1/262-333\|4.4e-24" - - -	11408	21,847,194 – 21,847,269	+	12	76	85.41	-2.13	0.96	0.992330
8303	dm3.chr3L	21,847,194 – 21,847,269		11409	21,847,194 – 21,847,269	-	12	76	85.41	-1.70	1.03	0.986899
8308	dm3.chr3L	21,886,936 – 21,887,026	- - - intron="intron;ID=intron_FBgn0014362:3_FBgn0014362:4;Name=mub-in;Parent=FBtr0111017,FBtr0078470,FBtr0301364,FBtr0304983,FBtr0304984,FBtr0078468;parent_type=mRNA" - - - -	11415	21,886,936 – 21,887,026	-	8	90	86.50	-2.39	0.65	0.902725
8312	dm3.chr3L	21,922,376 – 21,922,468	- - - - - - - -	11419	21,922,376 – 21,922,468	+	8	101	85.70	-3.36	0.63	0.993417
8317	dm3.chr3L	21,967,267 – 21,967,382	- - - intron="intron;ID=intron_CG7470:1_CG7470:2;Name=CG7470-in;Parent=FBtr0078477;parent_type=mRNA" - - - -	11427	21,967,267 – 21,967,382	+	5	120	81.86	-2.25	0.70	0.955900
8325	dm3.chr3L	22,008,459 – 22,008,538	- - - - - - - -	11437	22,008,459 – 22,008,538	+	5	79	84.86	-2.77	0.74	0.986841
8330	dm3.chr3L	22,060,573 – 22,060,628	- - - - - - - -	11442	22,060,573 – 22,060,628	-	7	65	66.42	-0.80	0.74	0.959132
8334	dm3.chr3L	22,099,568 – 22,099,658	- - - - - - - -	11449	22,099,568 – 22,099,658	+	9	107	79.21	-1.73	0.66	0.909976
8338	dm3.chr3L	22,117,847 – 22,117,957	- - - - - - - -	11454	22,117,847 – 22,117,957	-	7	114	67.04	-2.40	0.35	0.984748
8339	dm3.chr3L	22,118,599 – 22,118,720	- - - - - - - -	11455	22,118,599 – 22,118,695	+	5	96	99.38	-1.90	1.00	0.960084
8341	dm3.chr3L	22,124,410 – 22,124,516	- - - - - - - -	11460	22,124,410 – 22,124,516	-	7	115	72.99	-2.04	0.49	0.937736
8343	dm3.chr3L	22,139,752 – 22,139,850	- - - intron="intron;ID=intron_FBgn0037153:1_FBgn0037153:2;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11462	22,139,752 – 22,139,850	+	5	98	99.59	-1.78	1.01	0.955359
8344	dm3.chr3L	22,142,251 – 22,142,349	- - - intron="intron;ID=intron_FBgn0037153:1_FBgn0037153:2;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11463	22,142,251 – 22,142,349	-	4	98	92.21	-1.71	0.96	0.937107
8345	dm3.chr3L	22,142,881 – 22,142,981	- - - intron="intron;ID=intron_FBgn0037153:1_FBgn0037153:2;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11464	22,142,881 – 22,142,981	-	8	112	81.35	-1.86	0.81	0.968689
8346	dm3.chr3L	22,146,113 – 22,146,215	- - - intron="intron;ID=intron_FBgn0037153:1_FBgn0037153:2;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11465	22,146,113 – 22,146,215	+	4	110	85.76	-2.83	0.69	0.969747
8349	dm3.chr3L	22,161,811 – 22,161,931	- - - intron="intron;ID=intron_FBgn0037153:1_FBgn0037153:2;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11471	22,161,811 – 22,161,931	+	10	120	88.77	-2.39	0.86	0.980498
8351	dm3.chr3L	22,189,804 – 22,189,898	- - - intron="intron;ID=intron_FBgn0037153:2_FBgn0037153:3;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11473	22,189,804 – 22,189,898	+	6	101	75.09	-2.75	0.53	0.993902
8353	dm3.chr3L	22,192,898 – 22,192,996	- - - intron="intron;ID=intron_FBgn0037153:2_FBgn0037153:3;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11476	22,192,898 – 22,192,996	-	10	115	84.59	-2.24	0.67	0.920758
8354	dm3.chr3L	22,198,449 – 22,198,552	- - - intron="intron;ID=intron_FBgn0037153:2_FBgn0037153:3;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11477	22,198,449 – 22,198,552	-	7	112	59.59	-1.73	0.39	0.986913
8360	dm3.chr3L	22,224,924 – 22,225,026	- - - intron="intron;ID=intron_FBgn0037153:9_FBgn0037153:10;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11483	22,224,924 – 22,225,016	-	12	107	86.05	-2.66	0.89	0.995351
8360	dm3.chr3L	22,224,924 – 22,225,026		11484	22,224,936 – 22,225,026	-	12	113	85.77	-2.53	0.79	0.987133
8363	dm3.chr3L	22,260,263 – 22,260,384	- - - - - - - -	11488	22,260,275 – 22,260,384	+	3	116	61.29	-2.24	0.39	0.907302
8369	dm3.chr3L	22,318,833 – 22,318,915	- - - intron="intron;ID=intron_FBgn0004449:12_FBgn0004449:11;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11496	22,318,833 – 22,318,915	+	5	96	55.05	-1.86	0.40	0.992595
8371	dm3.chr3L	22,325,291 – 22,325,393	- - - - - - - -	11498	22,325,291 – 22,325,393	-	6	106	80.24	-2.07	0.70	0.964879
8375	dm3.chr3L	22,329,752 – 22,329,864	- - - - - - - -	11503	22,329,752 – 22,329,864	-	7	119	73.07	-1.62	0.58	0.958737
8379	dm3.chr3L	22,361,308 – 22,361,383	- - - intron="intron;ID=intron_FBgn0004449:13_FBgn0004449:12;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11508	22,361,308 – 22,361,383	+	8	75	74.01	-2.18	0.43	0.964909
8382	dm3.chr3L	22,380,467 – 22,380,599	- - - intron="intron;ID=intron_FBgn0004449:13_FBgn0004449:12;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11513	22,380,467 – 22,380,562	-	10	96	81.43	-2.14	0.60	0.962941
8382	dm3.chr3L	22,380,467 – 22,380,599		11515	22,380,481 – 22,380,599	-	12	120	89.79	-2.02	0.82	0.927138
8389	dm3.chr3L	22,409,474 – 22,409,605	- - - - - - - -	11525	22,409,474 – 22,409,576	-	9	107	87.61	-3.39	0.84	0.998137
				11526	22,409,487 – 22,409,605	+	12	119	92.20	-2.59	0.80	0.967281
				11527	22,409,487 – 22,409,605	-	12	119	92.20	-3.38	0.76	0.993587
8390	dm3.chr3L	22,411,730 – 22,411,849	- - - - - - - -	11528	22,411,730 – 22,411,843	+	5	118	61.48	-2.16	0.33	0.967834
8391	dm3.chr3L	22,422,562 – 22,422,655	- - - - - - - -	11530	22,422,562 – 22,422,655	+	4	93	79.49	-2.07	0.74	0.933351
8391	dm3.chr3L	22,422,562 – 22,422,655	- - - - - - - -	11531	22,422,562 – 22,422,655	-	4	93	79.49	-2.08	0.73	0.928206
8393	dm3.chr3L	22,446,811 – 22,446,914	- - - - - - - -	11533	22,446,811 – 22,446,914	+	9	105	87.63	-2.58	0.72	0.971159
8398	dm3.chr3L	22,472,775 – 22,472,888	- - - - - - - -	11539	22,472,784 – 22,472,888	+	12	116	60.58	-1.27	0.35	0.900673
8404	dm3.chr3L	22,511,286 – 22,511,409	FBnoncoding="pre_miRNA;ID=FBtr0304192;Name=mir-957-RM;Parent=FBgn0262182;Alias=CR42889-RM;Dbxref=FlyBase_Annotation_IDs:CR42889-RM,miRBase:MI0005811" - - - - - - "mirBase_v16=dsi-mir-957\|8.8e-55"	11547	22,511,286 – 22,511,409	-	11	139	81.02	-2.24	0.78	0.989855
8405	dm3.chr3L	22,511,704 – 22,511,819	- - - - - - - -	11548	22,511,704 – 22,511,819	-	5	115	89.64	-2.71	0.70	0.924630
8406	dm3.chr3L	22,522,793 – 22,522,885	- - - - - - - -	11549	22,522,793 – 22,522,885	+	11	98	63.65	-1.86	0.36	0.985665
8408	dm3.chr3L	22,533,720 – 22,533,850	- - - - - - - -	11552	22,533,720 – 22,533,831	-	9	117	65.44	-2.14	0.31	0.937991
8409	dm3.chr3L	22,538,253 – 22,538,366	- - - - - - - -	11554	22,538,253 – 22,538,366	-	3	113	89.64	-3.11	0.73	0.971408
8410	dm3.chr3L	22,538,368 – 22,538,464	- - - - - - - -	11555	22,538,368 – 22,538,464	-	3	96	93.71	-2.00	0.91	0.911410
8414	dm3.chr3L	22,569,921 – 22,570,035	- - - - - - - -	11559	22,569,921 – 22,570,012	-	9	98	92.32	-2.22	0.89	0.963058
8414	dm3.chr3L	22,569,921 – 22,570,035	- - - - - - - -	11560	22,569,939 – 22,570,035	-	9	119	84.22	-2.52	0.79	0.990069
8416	dm3.chr3L	22,586,091 – 22,586,183	- - - intron="intron;ID=intron_FBgn0037171:3_FBgn0037171:2;Name=CG14459-in;Parent=FBtr0113185;parent_type=mRNA" - - - -	11562	22,586,091 – 22,586,183	+	12	102	88.54	-2.00	0.80	0.906919
8417	dm3.chr3L	22,589,754 – 22,589,833	- - - intron="intron;ID=intron_FBgn0037171:4_FBgn0037171:3;Name=CG14459-in;Parent=FBtr0113185;parent_type=mRNA" - - - -	11563	22,589,754 – 22,589,833	+	5	90	81.66	-1.36	0.90	0.901841
8423	dm3.chr3L	22,641,790 – 22,641,841	- - CDS="CDS;ID=CDS_FBgn0053770:1_360;Name=CG33770-cds;Parent=FBtr0290125;parent_type=mRNA" - - - - -	11570	22,641,790 – 22,641,841	+	6	55	65.61	-1.33	0.72	0.991713
8425	dm3.chr3L	22,651,158 – 22,651,270	- - - - - - - -	11573	22,651,158 – 22,651,270	+	10	114	88.92	-3.38	0.71	0.993719
8426	dm3.chr3L	22,651,913 – 22,651,968	- - - - - - - -	11575	22,651,913 – 22,651,968	+	7	57	66.41	-0.98	0.62	0.978566
8427	dm3.chr3L	22,662,378 – 22,662,484	FBnoncoding="pre_miRNA;ID=FBtr0304337;Name=mir-958-RM;Parent=FBgn0262249;Alias=CR42956-RM;Dbxref=FlyBase_Annotation_IDs:CR42956-RM,miRBase:MI0005812" - - - - - - "mirBase_v16=dme-mir-958\|1.1e-47"	11577	22,662,378 – 22,662,484	+	12	108	86.04	-1.92	0.79	0.937889
8427	dm3.chr3L	22,662,378 – 22,662,484		11578	22,662,378 – 22,662,484	-	12	108	86.04	-3.36	0.63	0.995555
8432	dm3.chr3L	22,685,769 – 22,685,838	- - - - - - - -	11583	22,685,769 – 22,685,838	-	4	70	63.78	-1.13	0.62	0.909485
8433	dm3.chr3L	22,694,545 – 22,694,676	- - - - - - - -	11586	22,694,571 – 22,694,676	-	6	109	77.86	-2.11	0.53	0.905815
8435	dm3.chr3L	22,724,911 – 22,725,030	- - - intron="intron;ID=intron_FBgn0037185:1_FBgn0037185:2;Name=CG11367-in;Parent=FBtr0078528;parent_type=mRNA" - - - -	11589	22,724,939 – 22,725,030	+	6	104	65.05	-1.84	0.40	0.966053
8437	dm3.chr3L	22,733,742 – 22,733,894	- - CDS="CDS;ID=CDS_FBgn0010830:4_454;Name=l(3)04053-cds;Parent=FBtr0078535;parent_type=mRNA" - - - - -	11592	22,733,779 – 22,733,870	+	11	114	69.76	-2.05	0.51	0.992165
8437	dm3.chr3L	22,733,742 – 22,733,894		11594	22,733,804 – 22,733,894	+	10	90	74.93	-1.45	0.59	0.949940
8441	dm3.chr3L	22,766,564 – 22,766,640	- - - intron="intron;ID=intron_FBgn0052451:2_FBgn0052451:7;Name=SPoCk-in;Parent=FBtr0113437;parent_type=mRNA" - - - -	11599	22,766,564 – 22,766,640	+	5	77	90.26	-3.04	0.97	0.997564
8442	dm3.chr3L	22,775,089 – 22,775,192	- - - intron="intron;ID=intron_FBgn0052451:7_FBgn0052451:8;Name=SPoCk-in;Parent=FBtr0078531,FBtr0078532,FBtr0078533,FBtr0113437,FBtr0302134;parent_type=mRNA" - - - -	11600	22,775,089 – 22,775,192	+	3	114	86.75	-2.70	0.69	0.903251
8444	dm3.chr3L	22,795,458 – 22,795,516	- - - intron="intron;ID=intron_FBgn0027339:10_FBgn0027339:9;Name=jim-in;Parent=FBtr0304985;parent_type=mRNA" - - - -	11602	22,795,458 – 22,795,516	-	3	58	54.71	-1.24	0.58	0.965431
8448	dm3.chr3L	22,840,807 – 22,840,905	FBnoncoding="tRNA;ID=FBtr0078580;Name=tRNA:CR32460-RA;Parent=FBgn0052460;Alias=CR32460-RA;Dbxref=FlyBase_Annotation_IDs:CR32460-RA;score_text=Weakly" tRNAscann="Glu_chr3L_trna33" - - "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|2.6e-29" - - -	11606	22,840,807 – 22,840,905	+	12	104	81.71	-1.69	0.90	0.978692
8448	dm3.chr3L	22,840,807 – 22,840,905		11607	22,840,807 – 22,840,905	-	12	104	81.71	-1.22	0.88	0.916417
8450	dm3.chr3L	22,844,425 – 22,844,501	- - - - - - - -	11609	22,844,425 – 22,844,501	+	6	80	72.71	-1.74	0.63	0.975044
8451	dm3.chr3L	22,853,581 – 22,853,635	- - - - - - - -	11610	22,853,581 – 22,853,635	-	4	66	54.05	-2.51	0.45	0.998813
8453	dm3.chr3L	22,881,907 – 22,881,997	- - - intron="intron;ID=intron_CG11128:4_CG11128:2;Name=slif-in;Parent=FBtr0078556;parent_type=mRNA" - - - -	11612	22,881,907 – 22,881,997	+	3	90	66.41	-2.31	0.57	0.979988
8455	dm3.chr3L	22,892,462 – 22,892,559	- - - - - - - -	11614	22,892,462 – 22,892,559	+	6	97	58.30	-1.11	0.47	0.952768
8460	dm3.chr3L	22,933,355 – 22,933,445	- - - - - - - -	11619	22,933,355 – 22,933,445	-	4	90	67.29	-1.72	0.50	0.915793
8461	dm3.chr3L	22,933,966 – 22,934,023	- - - - - - - -	11620	22,933,966 – 22,934,023	+	5	58	60.21	-1.69	0.53	0.989728
8462	dm3.chr3L	22,983,418 – 22,983,483	- - - - - - - -	11621	22,983,418 – 22,983,483	+	5	73	47.99	-1.19	0.40	0.916998
8465	dm3.chr3L	23,041,667 – 23,041,744	- - - - - - - -	11624	23,041,667 – 23,041,744	-	4	79	60.68	-1.03	0.57	0.946321
8466	dm3.chr3L	23,112,521 – 23,112,631	- - - - - - - -	11625	23,112,521 – 23,112,631	+	4	110	52.14	-2.44	0.45	0.999452
8466	dm3.chr3L	23,112,521 – 23,112,631	- - - - - - - -	11626	23,112,521 – 23,112,631	-	4	110	52.14	-2.12	0.45	0.998533
8468	dm3.chr3L	23,128,172 – 23,128,265	- - - - - - - -	11628	23,128,172 – 23,128,265	-	4	107	64.67	-1.88	0.46	0.954311
8469	dm3.chr3L	23,128,515 – 23,128,609	- - - - - - - -	11629	23,128,515 – 23,128,609	-	3	95	62.64	-2.02	0.51	0.947344
8470	dm3.chr3L	23,133,116 – 23,133,187	- - - - - - - -	11630	23,133,116 – 23,133,187	+	5	71	70.24	-0.90	0.79	0.925306
8470	dm3.chr3L	23,133,116 – 23,133,187	- - - - - - - -	11631	23,133,116 – 23,133,187	-	5	71	70.24	-1.76	0.80	0.993676
8474	dm3.chr3L	23,231,303 – 23,231,354	- - - intron="intron;ID=intron_FBgn0037212:4_FBgn0037212:5;Name=nAcRalpha-80B-in;Parent=FBtr0300118;parent_type=mRNA" - - - -	11635	23,231,303 – 23,231,354	+	3	53	56.69	-1.60	0.92	0.994031
8474	dm3.chr3L	23,231,303 – 23,231,354		11636	23,231,303 – 23,231,354	-	3	53	56.69	-1.22	1.07	0.963706
8475	dm3.chr3L	23,243,754 – 23,243,809	- - - intron="intron;ID=intron_FBgn0037212:5_FBgn0037212:6;Name=nAcRalpha-80B-in;Parent=FBtr0300118;parent_type=mRNA" - - - -	11637	23,243,754 – 23,243,809	+	5	68	50.00	-1.99	0.25	0.909849
8476	dm3.chr3L	23,245,557 – 23,245,626	- - - intron="intron;ID=intron_FBgn0037212:5_FBgn0037212:6;Name=nAcRalpha-80B-in;Parent=FBtr0300118;parent_type=mRNA" - - - -	11638	23,245,557 – 23,245,626	+	3	72	60.77	-2.49	0.85	0.998431
8476	dm3.chr3L	23,245,557 – 23,245,626		11639	23,245,557 – 23,245,626	-	3	72	60.77	-2.34	0.69	0.997912
8479	dm3.chr3L	23,339,403 – 23,339,637	- - - - - - - -	11643	23,339,442 – 23,339,543	-	4	110	54.19	-2.32	0.40	0.997981
8479	dm3.chr3L	23,339,403 – 23,339,637	- - - - - - - -	11644	23,339,446 – 23,339,547	-	4	113	54.77	-2.20	0.34	0.983891
8481	dm3.chr3L	23,372,361 – 23,372,425	- - - - - - - -	11647	23,372,361 – 23,372,425	+	6	66	60.22	-0.94	0.50	0.945651
8481	dm3.chr3L	23,372,361 – 23,372,425	- - - - - - - -	11648	23,372,361 – 23,372,425	-	6	66	60.22	-2.09	0.57	0.999519
8482	dm3.chr3L	23,414,107 – 23,414,187	- - - - - - - -	11649	23,414,107 – 23,414,187	-	3	80	81.25	-2.12	0.77	0.927302
8484	dm3.chr3L	23,557,000 – 23,557,192	- - - intron="intron;ID=intron_FBgn0250816:4_FBgn0250816:5;Name=AGO3-in;Parent=FBtr0299880;parent_type=mRNA" - - - -	11651	23,557,000 – 23,557,111	+	6	117	65.59	-2.61	0.52	0.999334
8484	dm3.chr3L	23,557,000 – 23,557,192		11652	23,557,000 – 23,557,111	-	6	117	65.59	-2.74	0.45	0.998865
8485	dm3.chr3L	23,565,072 – 23,565,179	- - - intron="intron;ID=intron_FBgn0250816:6_FBgn0250816:7;Name=AGO3-in;Parent=FBtr0299880,FBtr0299881,FBtr0299882,FBtr0301725;parent_type=mRNA" - - - -	11654	23,565,072 – 23,565,179	+	3	118	68.64	-5.47	0.68	0.999863
8485	dm3.chr3L	23,565,072 – 23,565,179		11655	23,565,072 – 23,565,179	-	3	118	68.64	-4.83	0.50	0.999875
8486	dm3.chr3L	23,590,095 – 23,590,240	- - - intron="intron;ID=intron_FBgn0250816:7_FBgn0250816:8;Name=AGO3-in;Parent=FBtr0299880,FBtr0299881,FBtr0299882,FBtr0301725;parent_type=mRNA" - - - -	11656	23,590,095 – 23,590,240	+	3	149	50.00	-1.90	0.54	0.998240
8486	dm3.chr3L	23,590,095 – 23,590,240		11657	23,590,095 – 23,590,240	-	3	149	50.00	-1.39	0.46	0.965863
8488	dm3.chr3L	23,646,508 – 23,646,561	- - - intron="intron;ID=intron_FBgn0250816:10_FBgn0250816:12;Name=AGO3-in;Parent=FBtr0299880,FBtr0299881,FBtr0299882;parent_type=mRNA" - - - -	11659	23,646,508 – 23,646,561	+	3	65	63.35	-1.08	0.74	0.911583
8488	dm3.chr3L	23,646,508 – 23,646,561		11660	23,646,508 – 23,646,561	-	3	65	63.35	-1.72	0.74	0.987467
8489	dm3.chr3L	23,655,603 – 23,655,695	- - - intron="intron;ID=intron_FBgn0250816:10_FBgn0250816:12;Name=AGO3-in;Parent=FBtr0299880,FBtr0299881,FBtr0299882;parent_type=mRNA" - - - -	11661	23,655,603 – 23,655,695	+	3	97	66.67	-1.49	0.73	0.949444
8490	dm3.chr3L	23,681,192 – 23,681,245	- - - intron="intron;ID=intron_FBgn0250816:10_FBgn0250816:12;Name=AGO3-in;Parent=FBtr0299880,FBtr0299881,FBtr0299882;parent_type=mRNA" - - - -	11662	23,681,192 – 23,681,245	+	3	55	92.73	-1.85	1.00	0.975793
8491	dm3.chr3L	23,689,431 – 23,689,492	- - - - - - - -	11664	23,689,431 – 23,689,492	+	5	63	57.49	-1.58	0.63	0.998822
8493	dm3.chr3L	23,750,032 – 23,750,200	- - - - - - - -	11666	23,750,032 – 23,750,200	+	3	168	50.20	-1.93	0.32	0.935031
8494	dm3.chr3L	23,784,108 – 23,784,204	- - - - - - - -	11667	23,784,108 – 23,784,204	-	3	96	57.29	-3.83	0.19	0.988516
8498	dm3.chr3L	23,949,693 – 23,949,805	- - - intron="intron;ID=intron_CG40470:1012184-1012122_CG40470:972645-972404;Name=CG40470-in;Parent=FBtr0111152;parent_type=mRNA" - - - -	11672	23,949,693 – 23,949,805	+	4	113	53.36	-1.86	0.32	0.937776
8500	dm3.chr3L	23,994,346 – 23,994,521	- - - - - - - -	11674	23,994,346 – 23,994,521	+	3	178	51.32	-2.87	0.25	0.982631
8503	dm3.chr3L	24,051,794 – 24,051,859	- - - - - - - -	11678	24,051,794 – 24,051,859	-	3	65	55.50	-2.96	0.51	0.999652
8504	dm3.chr3L	24,090,780 – 24,090,858	- - - intron="intron;ID=intron_FBgn0011288:2_FBgn0011288:3;Name=Snap25-in;Parent=FBtr0111143,FBtr0304625,FBtr0304626;parent_type=mRNA" - - - -	11679	24,090,780 – 24,090,858	+	7	85	65.72	-1.85	0.37	0.944593
8504	dm3.chr3L	24,090,780 – 24,090,858		11680	24,090,780 – 24,090,858	-	7	85	65.72	-2.02	0.35	0.953954
8505	dm3.chr3L	24,098,767 – 24,098,831	- - - intron="intron;ID=intron_FBgn0011288:2_FBgn0011288:3;Name=Snap25-in;Parent=FBtr0111143,FBtr0304625,FBtr0304626;parent_type=mRNA" - - - -	11682	24,098,767 – 24,098,831	-	12	78	51.31	-2.02	0.26	0.983623
8506	dm3.chr3L	24,099,761 – 24,099,911	- - - intron="intron;ID=intron_FBgn0011288:2_FBgn0011288:3;Name=Snap25-in;Parent=FBtr0111143,FBtr0304625,FBtr0304626;parent_type=mRNA" - - - -	11683	24,099,761 – 24,099,911	+	5	153	88.66	-2.92	0.75	0.981455
8506	dm3.chr3L	24,099,761 – 24,099,911		11684	24,099,761 – 24,099,911	-	5	153	88.66	-3.59	0.80	0.997358
8508	dm3.chr3L	24,156,961 – 24,157,132	- - - intron="intron;ID=intron_FBgn0011288:4_FBgn0011288:6;Name=Snap25-in;Parent=FBtr0111143,FBtr0304626;parent_type=mRNA" - - - -	11687	24,157,030 – 24,157,132	+	4	117	61.76	-2.44	0.48	0.998112
8508	dm3.chr3L	24,156,961 – 24,157,132		11688	24,157,030 – 24,157,132	-	4	117	61.76	-2.89	0.37	0.997020
8513	dm3.chr3L	24,272,292 – 24,272,356	- - - intron="intron;ID=intron_FBgn0011288:8_FBgn0011288:9;Name=Snap25-in;Parent=FBtr0111143,FBtr0304625;parent_type=mRNA" - - - -	11693	24,272,292 – 24,272,356	+	6	68	57.55	-0.72	0.52	0.940551
8513	dm3.chr3L	24,272,292 – 24,272,356		11694	24,272,292 – 24,272,356	-	6	68	57.55	-1.76	0.55	0.998935
8514	dm3.chr3L	24,276,560 – 24,276,664	- - - intron="intron;ID=intron_FBgn0011288:8_FBgn0011288:9;Name=Snap25-in;Parent=FBtr0111143,FBtr0304625;parent_type=mRNA" - - - -	11695	24,276,560 – 24,276,662	+	4	117	61.95	-3.71	0.49	0.999853
				11696	24,276,560 – 24,276,662	-	4	117	61.95	-1.67	0.55	0.980464
				11697	24,276,560 – 24,276,664	+	4	117	61.99	-3.73	0.49	0.999868
				11698	24,276,560 – 24,276,664	-	4	117	61.99	-1.50	0.57	0.975216
8519	dm3.chr3L	24,345,918 – 24,345,970	- - - intron="intron;ID=intron_FBgn0259697:2_FBgn0259697:3;Name=nvd-in;Parent=FBtr0113473;parent_type=mRNA" - - - -	11703	24,345,918 – 24,345,970	+	3	52	58.33	-3.21	0.35	0.996108
8519	dm3.chr3L	24,345,918 – 24,345,970		11704	24,345,918 – 24,345,970	-	3	52	58.33	-2.55	0.30	0.908505
8520	dm3.chr3L	24,364,141 – 24,364,243	- - - intron="intron;ID=intron_FBgn0259697:3_FBgn0259697:4;Name=nvd-in;Parent=FBtr0113473;parent_type=mRNA" - - - -	11705	24,364,141 – 24,364,243	+	5	106	57.48	-2.82	0.16	0.939340
8521	dm3.chr3L	24,393,841 – 24,393,892	- - - intron="intron;ID=intron_FBgn0259697:3_FBgn0259697:4;Name=nvd-in;Parent=FBtr0113473;parent_type=mRNA" - - - -	11706	24,393,841 – 24,393,892	+	3	52	65.58	-1.92	0.99	0.991924
8521	dm3.chr3L	24,393,841 – 24,393,892		11707	24,393,841 – 24,393,892	-	3	52	65.58	-2.82	0.92	0.998327
8524	dm3.chr3L	24,436,923 – 24,437,013	- - - - - - - -	11711	24,436,923 – 24,437,013	+	3	119	58.05	-2.54	0.57	0.998098
8524	dm3.chr3L	24,436,923 – 24,437,013	- - - - - - - -	11712	24,436,923 – 24,437,013	-	3	119	58.05	-1.83	0.47	0.928693
8525	dm3.chr3L	24,458,056 – 24,458,200	- - - - - - - -	11714	24,458,096 – 24,458,200	+	4	111	52.58	-2.38	0.29	0.981264
8527	dm3.chr3L	24,479,092 – 24,479,158	- - - - - - - -	11716	24,479,092 – 24,479,158	+	4	68	52.69	-2.32	0.31	0.978240
8528	dm3.chr3L	24,496,289 – 24,496,459	- - - - - - - -	11717	24,496,289 – 24,496,459	+	4	170	52.10	-2.40	0.20	0.908502
8529	dm3.chr3L	24,499,782 – 24,499,840	- - - - - - - -	11719	24,499,782 – 24,499,840	+	3	58	62.07	-1.72	0.48	0.907451
8532	dm3.chr3RHet	32,941 – 32,993	- - - intron="intron;ID=intron_FBgn0058155:2_FBgn0058155:1;Name=CG40155-in;Parent=FBtr0302251;parent_type=mRNA" - - - -	11722	32,941 – 32,993	+	3	52	66.03	-1.20	0.80	0.937580
8536	dm3.chr3RHet	116,517 – 116,630	- - - - - - - -	11726	116,517 – 116,630	+	4	113	53.01	-2.49	0.61	0.999792
8536	dm3.chr3RHet	116,517 – 116,630	- - - - - - - -	11727	116,517 – 116,630	-	4	113	53.01	-1.56	0.43	0.967847
8540	dm3.chr3RHet	183,161 – 183,310	- - - - - - - -	11731	183,161 – 183,270	+	3	118	55.08	-2.80	0.25	0.957106
8540	dm3.chr3RHet	183,161 – 183,310	- - - - - - - -	11734	183,190 – 183,310	-	3	120	63.89	-2.61	0.42	0.983240
8542	dm3.chr3RHet	184,261 – 184,368	- - - - - - - -	11736	184,261 – 184,368	+	4	109	67.90	-1.95	0.55	0.976692
8543	dm3.chr3RHet	254,615 – 254,667	- - - intron="intron;ID=intron_FBgn0040034:2_FBgn0040034:1;Name=CG15831-in;Parent=FBtr0302250;parent_type=mRNA" - - - -	11738	254,615 – 254,667	+	3	57	65.06	-2.58	0.48	0.985324
8545	dm3.chr3RHet	373,384 – 373,498	- - - intron="intron;ID=intron_FBgn0040034:3_FBgn0040034:2;Name=CG15831-in;Parent=FBtr0302250;parent_type=mRNA" - - - -	11740	373,384 – 373,498	+	6	120	75.59	-2.92	0.60	0.998001
8546	dm3.chr3RHet	410,887 – 410,973	- - - intron="intron;ID=intron_FBgn0040034:3_FBgn0040034:2;Name=CG15831-in;Parent=FBtr0302250;parent_type=mRNA" - - - -	11741	410,887 – 410,973	-	4	87	81.47	-1.91	0.81	0.943184
8547	dm3.chr3RHet	418,107 – 418,169	- - - intron="intron;ID=intron_FBgn0040034:3_FBgn0040034:2;Name=CG15831-in;Parent=FBtr0302250;parent_type=mRNA" - - - -	11743	418,107 – 418,169	-	4	62	70.70	-1.75	0.54	0.912640
8551	dm3.chr3RHet	555,944 – 556,090	- - - - - - - -	11747	555,944 – 556,052	+	4	113	54.03	-2.70	0.25	0.984004
				11748	555,944 – 556,052	-	4	113	54.03	-3.10	0.33	0.999227
				11749	555,977 – 556,090	+	4	120	57.14	-2.27	0.35	0.986811
8553	dm3.chr3RHet	610,049 – 610,143	- - - intron="intron;ID=intron_FBgn0261336:3_FBgn0261336:2;Name=CG42621-in;Parent=FBtr0302249;parent_type=mRNA" - - - -	11752	610,049 – 610,143	+	3	99	60.96	-1.61	0.57	0.952691
8555	dm3.chr3RHet	612,469 – 612,524	- - - intron="intron;ID=intron_FBgn0261336:3_FBgn0261336:2;Name=CG42621-in;Parent=FBtr0302249;parent_type=mRNA" - - - -	11755	612,469 – 612,524	-	4	56	73.05	-1.82	0.62	0.941158
8556	dm3.chr3RHet	634,591 – 634,688	- - - intron="intron;ID=intron_FBgn0261336:3_FBgn0261336:2;Name=CG42621-in;Parent=FBtr0302249;parent_type=mRNA" - - - -	11756	634,591 – 634,688	+	4	97	53.10	-2.01	0.34	0.985409
8557	dm3.chr3RHet	659,146 – 659,238	- - - intron="intron;ID=intron_FBgn0261336:4_FBgn0261336:3;Name=CG42621-in;Parent=FBtr0302249;parent_type=mRNA" - - - -	11757	659,146 – 659,238	+	4	111	75.98	-2.86	0.59	0.993553
8558	dm3.chr3RHet	683,752 – 683,814	- - - - - - - -	11759	683,752 – 683,814	+	9	65	65.40	-1.34	0.57	0.989981
8560	dm3.chr3RHet	704,153 – 704,256	- - - - - - - -	11761	704,153 – 704,256	+	5	116	65.49	-1.70	0.47	0.961897
8560	dm3.chr3RHet	704,153 – 704,256	- - - - - - - -	11762	704,153 – 704,256	-	5	116	65.49	-1.69	0.55	0.988223
8561	dm3.chr3RHet	730,317 – 730,396	- - - - - - - -	11763	730,317 – 730,396	-	6	96	69.15	-2.18	0.65	0.997029
8569	dm3.chr3RHet	846,597 – 846,648	- - - - - - - -	11773	846,597 – 846,648	-	3	51	58.82	-2.16	0.60	0.997020
8570	dm3.chr3RHet	866,834 – 866,928	- - - - - - - -	11774	866,834 – 866,928	+	3	94	66.67	-2.72	0.76	0.998515
8572	dm3.chr3RHet	918,734 – 918,799	- - - - - - - -	11776	918,734 – 918,799	-	4	67	65.08	-1.74	0.78	0.995283
8575	dm3.chr3RHet	982,271 – 982,358	- - - - - - - -	11779	982,271 – 982,358	+	6	105	62.85	-1.60	0.54	0.992213
8577	dm3.chr3RHet	1,006,061 – 1,006,190	- - - - - - - -	11781	1,006,061 – 1,006,190	+	6	131	70.91	-2.28	0.40	0.961735
8579	dm3.chr3RHet	1,009,803 – 1,009,891	- - - - - - - -	11783	1,009,803 – 1,009,891	+	5	88	74.09	-1.81	0.60	0.953965
8584	dm3.chr3RHet	1,091,782 – 1,091,848	- - - - - - - -	11789	1,091,782 – 1,091,848	-	3	66	94.95	-1.41	1.00	0.908497
8586	dm3.chr3RHet	1,162,807 – 1,162,908	- - - intron="intron;ID=intron_FBgn0085781:4_FBgn0085781:3;Name=CG41056-in;Parent=FBtr0302220;parent_type=mRNA" - - - -	11791	1,162,807 – 1,162,908	+	5	117	54.16	-1.90	0.29	0.907184
8586	dm3.chr3RHet	1,162,807 – 1,162,908		11792	1,162,807 – 1,162,908	-	5	117	54.16	-2.37	0.25	0.953950
8587	dm3.chr3RHet	1,168,439 – 1,168,503	- - - intron="intron;ID=intron_FBgn0085781:4_FBgn0085781:3;Name=CG41056-in;Parent=FBtr0302220;parent_type=mRNA" - - - -	11793	1,168,439 – 1,168,503	+	3	69	62.32	-2.07	0.60	0.990985
8588	dm3.chr3RHet	1,205,139 – 1,205,203	- - - intron="intron;ID=intron_FBgn0085781:4_FBgn0085781:3;Name=CG41056-in;Parent=FBtr0302220;parent_type=mRNA" - - - -	11794	1,205,139 – 1,205,203	-	5	65	71.21	-2.66	0.66	0.998935
8590	dm3.chr3RHet	1,297,330 – 1,297,472	- - - intron="intron;ID=intron_FBgn0085781:6_FBgn0085781:5;Name=CG41056-in;Parent=FBtr0302220;parent_type=mRNA" - - - -	11796	1,297,330 – 1,297,472	+	3	142	51.32	-2.88	0.19	0.921867
8592	dm3.chr3RHet	1,352,115 – 1,352,321	- - - - - - - -	11798	1,352,115 – 1,352,270	+	5	174	84.27	-3.39	0.73	0.997354
8592	dm3.chr3RHet	1,352,115 – 1,352,321	- - - - - - - -	11799	1,352,115 – 1,352,270	-	5	174	84.27	-2.59	0.71	0.975308
8594	dm3.chr3RHet	1,412,292 – 1,412,479	- - - - - - - -	11802	1,412,292 – 1,412,479	+	5	187	87.10	-2.63	0.80	0.983702
8594	dm3.chr3RHet	1,412,292 – 1,412,479	- - - - - - - -	11803	1,412,292 – 1,412,479	-	5	187	87.10	-3.81	0.67	0.997337
8596	dm3.chr3RHet	1,429,610 – 1,429,670	- - - - - - - -	11805	1,429,610 – 1,429,670	+	4	60	64.04	-2.04	0.70	0.998339
8596	dm3.chr3RHet	1,429,610 – 1,429,670	- - - - - - - -	11806	1,429,610 – 1,429,670	-	4	60	64.04	-2.89	0.85	0.999408
8598	dm3.chr3RHet	1,525,628 – 1,525,764	- - - intron="intron;ID=intron_FBgn0261281:2_FBgn0261281:1;Name=CG42618-in;Parent=FBtr0302219;parent_type=mRNA" - - - -	11808	1,525,628 – 1,525,764	+	3	136	53.75	-2.05	0.57	0.998375
8604	dm3.chr3RHet	1,640,232 – 1,640,367	- - - - - - - -	11814	1,640,232 – 1,640,367	-	4	136	74.72	-2.10	0.77	0.988070
8605	dm3.chr3RHet	1,643,992 – 1,644,087	- - - - - - - -	11815	1,643,992 – 1,644,087	+	3	96	50.87	-1.30	0.43	0.921623
8605	dm3.chr3RHet	1,643,992 – 1,644,087	- - - - - - - -	11816	1,643,992 – 1,644,087	-	3	96	50.87	-2.55	0.38	0.997345
8606	dm3.chr3RHet	1,673,838 – 1,673,977	- - - - - - - -	11817	1,673,838 – 1,673,937	-	6	116	63.66	-1.70	0.35	0.906734
8606	dm3.chr3RHet	1,673,838 – 1,673,977	- - - - - - - -	11819	1,673,878 – 1,673,977	-	4	118	63.11	-3.15	0.52	0.999677
8610	dm3.chr3RHet	1,794,075 – 1,794,130	- - - - - - - -	11823	1,794,075 – 1,794,130	+	7	57	70.97	-1.49	0.58	0.976955
8612	dm3.chr3RHet	1,833,484 – 1,833,621	- - - - - - - -	11826	1,833,484 – 1,833,621	+	4	144	68.99	-2.41	0.47	0.979060
8612	dm3.chr3RHet	1,833,484 – 1,833,621	- - - - - - - -	11827	1,833,484 – 1,833,621	-	4	144	68.99	-1.84	0.56	0.958967
8618	dm3.chr3RHet	1,958,658 – 1,958,737	- - - intron="intron;ID=intron_FBgn0010247:3_FBgn0010247:4;Name=Parp-in;Parent=FBtr0113885;parent_type=mRNA" - - - -	11834	1,958,658 – 1,958,737	+	3	81	59.75	-2.67	0.55	0.998996
8620	dm3.chr3RHet	2,024,229 – 2,024,357	- - - intron="intron;ID=intron_FBgn0010247:5_FBgn0010247:6;Name=Parp-in;Parent=FBtr0113885;parent_type=mRNA" - - - -	11836	2,024,229 – 2,024,325	+	5	111	64.00	-1.10	0.60	0.965395
8621	dm3.chr3RHet	2,102,062 – 2,102,127	- - - - - - - -	11838	2,102,062 – 2,102,127	+	5	66	68.28	-1.62	0.96	0.989461
8623	dm3.chr3RHet	2,105,677 – 2,105,728	- - - - - - - -	11840	2,105,677 – 2,105,728	-	4	58	73.70	-2.00	0.72	0.975159
8626	dm3.chr3RHet	2,162,613 – 2,162,714	- - - - - - - -	11843	2,162,613 – 2,162,714	+	4	106	69.84	-1.74	0.64	0.965195
8626	dm3.chr3RHet	2,162,613 – 2,162,714	- - - - - - - -	11844	2,162,613 – 2,162,714	-	4	106	69.84	-1.76	0.58	0.938750
8627	dm3.chr3RHet	2,210,649 – 2,210,742	- - - intron="intron;ID=intron_FBgn0261280:6_FBgn0261280:7;Name=CG42617-in;Parent=FBtr0302215;parent_type=mRNA" - - - -	11845	2,210,649 – 2,210,742	+	6	97	70.07	-1.40	0.53	0.911975
8631	dm3.chr3RHet	2,292,857 – 2,292,985	- - - intron="intron;ID=intron_FBgn0261280:6_FBgn0261280:7;Name=CG42617-in;Parent=FBtr0302215;parent_type=mRNA" - - - -	11849	2,292,857 – 2,292,985	-	4	134	60.08	-2.61	0.35	0.989428
8632	dm3.chr3RHet	2,297,207 – 2,297,285	- - - intron="intron;ID=intron_FBgn0261280:6_FBgn0261280:7;Name=CG42617-in;Parent=FBtr0302215;parent_type=mRNA" - - - -	11850	2,297,207 – 2,297,285	+	4	78	70.37	-2.37	0.80	0.997540
8632	dm3.chr3RHet	2,297,207 – 2,297,285		11851	2,297,207 – 2,297,285	-	4	78	70.37	-3.23	0.92	0.998868
8635	dm3.chr3R	46,630 – 46,745	- - - intron="intron;ID=intron_CG1107:4_CG1107:5;Name=aux-in;Parent=FBtr0078965;parent_type=mRNA" - - - -	11854	46,630 – 46,745	+	5	120	72.95	-2.08	0.67	0.984223
8635	dm3.chr3R	46,630 – 46,745		11855	46,630 – 46,745	-	5	120	72.95	-2.07	0.65	0.980530
8637	dm3.chr3R	121,092 – 121,163	FBnoncoding="pre_miRNA;ID=FBtr0304264;Name=mir-929-RM;Parent=FBgn0262214;Alias=CR42921-RM;Dbxref=FlyBase_Annotation_IDs:CR42921-RM,miRBase:MI0005853" - - intron="intron;ID=intron_FBgn0041605:24_FBgn0041605:25;Name=cpx-in;Parent=FBtr0078900,FBtr0113338,FBtr0113339,FBtr0113340,FBtr0113341,FBtr0301768,FBtr0301770,FBtr0301772;parent_type=mRNA" "Rfam_10.0=RF00947;mir-929;AABU01002551.1/121293-121386\|1.2e-33" - - "mirBase_v16=dme-mir-929\|2.3e-35"	11857	121,092 – 121,163	+	15	77	85.56	-5.17	0.89	0.999170
8637	dm3.chr3R	121,092 – 121,163		11858	121,092 – 121,163	-	15	77	85.56	-4.19	0.92	0.999191
8639	dm3.chr3R	143,749 – 143,867	- - CDS="CDS;ID=CDS_CG9778:144010-143678_87;Name=Syt14-cds;Parent=FBtr0078957;parent_type=mRNA" - - - - -	11860	143,749 – 143,867	-	12	120	74.32	-1.40	0.55	0.914415
8641	dm3.chr3R	186,740 – 186,833	- - - intron="intron;ID=intron_FBgn0037238:1_FBgn0037238:2;Name=CG1090-in;Parent=FBtr0078912;parent_type=mRNA" - - - -	11863	186,740 – 186,833	+	5	96	85.08	-2.73	0.77	0.986067
				11864	186,740 – 186,833	-	5	96	85.08	-2.24	0.77	0.941915
				11865	186,741 – 186,833	+	5	95	85.35	-2.79	0.77	0.987438
				11866	186,741 – 186,833	-	5	95	85.35	-2.31	0.77	0.950078
8643	dm3.chr3R	258,474 – 258,618	- - CDS="CDS;ID=CDS_FBgn0037249:3_179;Name=eIF3-S10-cds;Parent=FBtr0078944;parent_type=mRNA" - - - - -	11869	258,498 – 258,618	+	15	120	82.52	-2.79	0.43	0.936037
8645	dm3.chr3R	286,931 – 286,985	- - - - - - - -	11872	286,931 – 286,985	+	5	56	60.88	-1.57	0.82	0.997676
8651	dm3.chr3R	348,344 – 348,421	- - - intron="intron;ID=intron_FBgn0085386:12_FBgn0085386:11;Name=CG34357-in;Parent=FBtr0112568;parent_type=mRNA" - - - -	11879	348,344 – 348,421	-	4	96	53.18	-1.38	0.46	0.960303
8654	dm3.chr3R	395,635 – 395,714	- - - - - - - -	11882	395,635 – 395,714	+	3	81	66.80	-1.45	0.68	0.908581
8658	dm3.chr3R	482,142 – 482,254	- - CDS="CDS;ID=CDS_CG12001:2_72;Name=CG12001-cds;Parent=FBtr0078861;parent_type=mRNA" - - - - -	11887	482,142 – 482,254	+	13	113	69.80	-3.62	0.17	0.989304
8658	dm3.chr3R	482,142 – 482,254		11888	482,142 – 482,254	-	13	113	69.80	-4.47	0.27	0.999818
8662	dm3.chr3R	534,597 – 534,717	- - CDS="CDS;ID=CDS_FBgn0051534:4_128;Name=CG31534-cds;Parent=FBtr0273376;parent_type=mRNA" - - - - -	11893	534,597 – 534,717	-	12	120	84.65	-2.36	0.76	0.985833
8667	dm3.chr3R	561,326 – 561,429	- - - - - - - -	11898	561,326 – 561,429	+	13	113	62.69	-1.32	0.53	0.995195
8671	dm3.chr3R	591,655 – 591,747	- - - intron="intron;ID=intron_CG31530:1_CG31530:2;Name=CG31530-in;Parent=FBtr0078882;parent_type=mRNA" - - - -	11902	591,655 – 591,747	+	4	109	69.62	-2.35	0.76	0.996423
8671	dm3.chr3R	591,655 – 591,747		11903	591,655 – 591,747	-	4	109	69.62	-2.27	0.54	0.973477
8673	dm3.chr3R	622,439 – 622,530	- - CDS="CDS;ID=CDS_FBgn0260794:10_36;Name=CG42574-cds;Parent=FBtr0303914;parent_type=mRNA" - - - - -	11906	622,439 – 622,530	-	5	91	97.80	-1.96	0.95	0.929353
8674	dm3.chr3R	622,690 – 622,781	- - CDS="CDS;ID=CDS_FBgn0260794:10_36;Name=CG42574-cds;Parent=FBtr0303914;parent_type=mRNA" - - - - -	11907	622,690 – 622,781	+	8	106	63.69	-1.44	0.41	0.940322
8676	dm3.chr3R	652,816 – 652,912	- - - - - - - -	11909	652,816 – 652,912	+	11	108	72.15	-1.50	0.50	0.929491
8679	dm3.chr3R	669,551 – 669,654	- - - - - - - -	11913	669,551 – 669,654	+	10	104	73.00	-2.25	0.35	0.937173
8680	dm3.chr3R	679,997 – 680,139	- - - intron="intron;ID=intron_CG1133:1_CG1133:2;Name=opa-in;Parent=FBtr0078836;parent_type=mRNA" - - - -	11914	679,997 – 680,104	+	8	118	82.08	-2.52	0.60	0.953557
8680	dm3.chr3R	679,997 – 680,139		11915	679,997 – 680,104	-	8	118	82.08	-2.96	0.64	0.992285
8683	dm3.chr3R	697,685 – 697,750	- - - - - - - -	11919	697,685 – 697,750	+	9	66	80.25	-2.32	0.58	0.957507
8689	dm3.chr3R	760,841 – 760,927	- - CDS="CDS;ID=CDS_FBgn0085335:2_92;Name=CG34306-cds;Parent=FBtr0112502;parent_type=mRNA" - - - - -	11926	760,841 – 760,927	+	13	86	74.05	-1.39	0.53	0.944939
8695	dm3.chr3R	795,313 – 795,365	- - - - - - - -	11933	795,313 – 795,365	+	3	63	75.66	-2.74	0.74	0.993513
8698	dm3.chr3R	802,747 – 802,798	- - - - - - - -	11937	802,747 – 802,798	+	6	61	58.30	-1.84	0.29	0.948883
8700	dm3.chr3R	840,720 – 840,783	- - - - - - - -	11941	840,720 – 840,783	-	3	63	96.77	-1.68	1.00	0.944614
8702	dm3.chr3R	850,061 – 850,201	- - - - - - - -	11945	850,087 – 850,201	+	10	116	84.77	-2.70	0.73	0.989047
8702	dm3.chr3R	850,061 – 850,201	- - - - - - - -	11946	850,087 – 850,201	-	10	116	84.77	-3.69	0.72	0.998779
8703	dm3.chr3R	852,522 – 852,652	- - - - - - - -	11947	852,522 – 852,634	-	6	119	78.77	-3.00	0.75	0.998388
8703	dm3.chr3R	852,522 – 852,652	- - - - - - - -	11948	852,534 – 852,652	-	6	120	77.28	-2.18	0.79	0.991893
8705	dm3.chr3R	870,056 – 870,142	- - - - - - - -	11950	870,056 – 870,142	+	4	86	91.47	-1.57	0.96	0.917400
8706	dm3.chr3R	885,549 – 885,658	- - - - - - - -	11951	885,549 – 885,658	-	5	112	77.77	-2.31	0.60	0.939000
8707	dm3.chr3R	903,483 – 903,546	- - - - - - - -	11953	903,483 – 903,546	-	4	63	98.41	-3.02	0.92	0.988850
8710	dm3.chr3R	921,933 – 921,983	- - - - - - - -	11956	921,933 – 921,983	-	5	50	97.60	-1.87	1.00	0.964980
8714	dm3.chr3R	943,063 – 943,121	- - - - - - - -	11960	943,063 – 943,121	+	5	65	64.77	-1.89	0.43	0.933708
8715	dm3.chr3R	967,463 – 967,642	- - - - - - - -	11962	967,530 – 967,642	+	3	118	79.71	-3.16	0.70	0.993337
8720	dm3.chr3R	1,019,481 – 1,019,606	- - - intron="intron;ID=intron_FBgn0259212:17_FBgn0259212:16;Name=cno-in;Parent=FBtr0299709,FBtr0299710,FBtr0300525;parent_type=mRNA" - - - -	11968	1,019,481 – 1,019,575	+	6	112	69.33	-2.08	0.48	0.964722
				11969	1,019,481 – 1,019,575	-	6	112	69.33	-2.71	0.47	0.994972
				11970	1,019,504 – 1,019,606	+	5	120	62.99	-1.92	0.43	0.945691
				11971	1,019,504 – 1,019,606	-	5	120	62.99	-2.34	0.37	0.960767
8721	dm3.chr3R	1,031,740 – 1,031,811	- - - intron="intron;ID=intron_FBgn0259212:22_FBgn0259212:21;Name=cno-in;Parent=FBtr0299709,FBtr0299710,FBtr0300525;parent_type=mRNA" - - - -	11972	1,031,740 – 1,031,811	+	7	77	66.44	-2.01	0.45	0.986518
8725	dm3.chr3R	1,072,290 – 1,072,390	- - - intron="intron;ID=intron_FBgn0260462:7_FBgn0260462:6;Name=CG12163-in;Parent=FBtr0078823;parent_type=mRNA" - - - -	11976	1,072,290 – 1,072,389	+	5	99	92.53	-1.87	0.91	0.915376
8725	dm3.chr3R	1,072,290 – 1,072,390		11977	1,072,291 – 1,072,390	+	5	99	92.53	-2.09	0.90	0.943425
8726	dm3.chr3R	1,076,257 – 1,076,329	- - - intron="intron;ID=intron_FBgn0260462:7_FBgn0260462:6;Name=CG12163-in;Parent=FBtr0078823;parent_type=mRNA" - - - -	11978	1,076,257 – 1,076,329	+	3	72	87.96	-2.53	0.77	0.930932
8727	dm3.chr3R	1,077,106 – 1,077,201	- - - - - - - -	11979	1,077,106 – 1,077,201	+	5	95	98.32	-2.40	0.98	0.984638
8729	dm3.chr3R	1,087,991 – 1,088,043	- - - intron="intron;ID=intron_FBgn0037307:2_FBgn0037307:1;Name=Tim17a2-in;Parent=FBtr0078820;parent_type=mRNA" - - - -	11982	1,087,991 – 1,088,043	+	4	52	95.19	-2.13	1.02	0.989640
8730	dm3.chr3R	1,090,099 – 1,090,253	- - - - - - - -	11984	1,090,099 – 1,090,253	+	5	163	79.79	-2.07	0.66	0.933497
8731	dm3.chr3R	1,104,737 – 1,104,834	- - - intron="intron;ID=intron_FBgn0013576:7_FBgn0013576:5;Name=l(3)82Fd-in;Parent=FBtr0273430;parent_type=mRNA" - - - -	11985	1,104,737 – 1,104,834	+	5	106	66.28	-2.21	0.51	0.991702
8737	dm3.chr3R	1,119,384 – 1,119,491	- - CDS="CDS;ID=CDS_FBgn0013576:14_143;Name=l(3)82Fd-cds;Parent=FBtr0110933;parent_type=mRNA" - - - - -	11993	1,119,384 – 1,119,491	+	14	110	83.37	-2.14	0.62	0.950665
8737	dm3.chr3R	1,119,384 – 1,119,491		11994	1,119,384 – 1,119,491	-	14	110	83.37	-2.25	0.55	0.923336
8742	dm3.chr3R	1,177,889 – 1,177,997	- - - - - - - -	11999	1,177,889 – 1,177,997	+	7	120	82.22	-2.07	0.70	0.930936
8743	dm3.chr3R	1,188,012 – 1,188,107	- - - - - - - -	12001	1,188,012 – 1,188,107	-	3	95	91.58	-1.98	0.92	0.938326
8745	dm3.chr3R	1,213,940 – 1,214,021	FBnoncoding="tRNA;ID=FBtr0078790;Name=tRNA:R:83AB-RA;Parent=FBgn0011965;Dbxref=FlyBase_Annotation_IDs:CR31593-RA;score_text=Weakly" tRNAscann="Arg_chr3R_trna1" - intron="intron;ID=intron_FBgn0001311:14_FBgn0001311:13;Name=kkv-in;Parent=FBtr0078798,FBtr0078800,FBtr0301398;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAJJ01004069.1/7732-7804\|5.1e-27" - - -	12003	1,213,940 – 1,214,021	+	13	81	95.57	-1.96	1.00	0.980938
8745	dm3.chr3R	1,213,940 – 1,214,021		12004	1,213,940 – 1,214,021	-	13	81	95.57	-3.43	0.99	0.998355
8754	dm3.chr3R	1,359,337 – 1,359,387	- - - intron="intron;ID=intron_CG1063:12_CG1063:13;Name=Itp-r83A-in;Parent=FBtr0078686,FBtr0078687;parent_type=mRNA" - - - -	12015	1,359,337 – 1,359,387	+	3	50	92.00	-4.40	1.00	0.999067
8758	dm3.chr3R	1,418,058 – 1,418,153	- - - intron="intron;ID=intron_CG1088:6_CG1088:3;Name=Vha26-in;Parent=FBtr0078701;parent_type=mRNA" - - - -	12021	1,418,058 – 1,418,153	-	12	111	69.33	-2.54	0.28	0.929897
8759	dm3.chr3R	1,419,288 – 1,419,411	- - - - - - - -	12022	1,419,288 – 1,419,395	+	5	107	97.20	-2.24	0.98	0.980765
8759	dm3.chr3R	1,419,288 – 1,419,411	- - - - - - - -	12023	1,419,320 – 1,419,411	+	5	91	97.80	-1.97	0.99	0.966994
8760	dm3.chr3R	1,419,703 – 1,419,838	- - - - - - - -	12024	1,419,703 – 1,419,808	+	12	117	64.44	-2.94	0.36	0.999132
				12025	1,419,703 – 1,419,808	-	12	117	64.44	-2.26	0.31	0.976600
				12026	1,419,737 – 1,419,838	+	12	117	66.36	-2.42	0.34	0.986631
				12027	1,419,737 – 1,419,838	-	12	117	66.36	-1.98	0.32	0.903787
8762	dm3.chr3R	1,422,237 – 1,422,317	FBnoncoding="snoRNA;ID=FBtr0113578;Name=snoRNA:Psi28S-3091b-RA;Parent=FBgn0082978;Dbxref=FlyBase_Annotation_IDs:CR34609-RA,REFSEQ:NR_003882;score_text=Weakly" - - intron="intron;ID=intron_CG2922:7_CG2922:9;Name=exba-in;Parent=FBtr0078745;parent_type=mRNA" - - - -	12029	1,422,237 – 1,422,317	-	11	95	67.88	-2.55	0.58	0.999586
8763	dm3.chr3R	1,423,367 – 1,423,495	FBnoncoding="snoRNA;ID=FBtr0113580;Name=snoRNA:Psi28S-3571-RA;Parent=FBgn0082954;Dbxref=FlyBase_Annotation_IDs:CR34611-RA,REFSEQ:NR_003884;score_text=Weakly" - - intron="intron;ID=intron_CG2922:5_CG2922:6;Name=exba-in;Parent=FBtr0078744,FBtr0078745,FBtr0078746,FBtr0078747,FBtr0078748,FBtr0078749,FBtr0078750;parent_type=mRNA" - - - -	12030	1,423,367 – 1,423,476	-	11	120	68.60	-1.25	0.52	0.943672
8763	dm3.chr3R	1,423,367 – 1,423,495		12031	1,423,398 – 1,423,495	-	11	109	69.40	-1.14	0.61	0.970629
8764	dm3.chr3R	1,424,146 – 1,424,327	FBnoncoding="snoRNA;ID=FBtr0113581;Name=snoRNA:Psi28S-2442b-RA;Parent=FBgn0082988;Dbxref=FlyBase_Annotation_IDs:CR34612-RA,REFSEQ:NR_003885;score_text=Weakly" - - intron="intron;ID=intron_CG2922:3_CG2922:4;Name=exba-in;Parent=FBtr0078744,FBtr0078745,FBtr0078746,FBtr0078747,FBtr0078748,FBtr0078749,FBtr0078750;parent_type=mRNA" - - - -	12033	1,424,186 – 1,424,295	-	12	117	74.55	-1.43	0.61	0.963031
8764	dm3.chr3R	1,424,146 – 1,424,327		12034	1,424,226 – 1,424,327	-	12	112	61.11	-1.33	0.47	0.993951
8765	dm3.chr3R	1,424,419 – 1,424,514	FBnoncoding="snoRNA;ID=FBtr0113582;Name=snoRNA:Psi28S-2442a-RA;Parent=FBgn0082989;Dbxref=FlyBase_Annotation_IDs:CR34613-RA,REFSEQ:NR_003886;score_text=Weakly" - - intron="intron;ID=intron_CG2922:3_CG2922:4;Name=exba-in;Parent=FBtr0078744,FBtr0078745,FBtr0078746,FBtr0078747,FBtr0078748,FBtr0078749,FBtr0078750;parent_type=mRNA" - - - -	12035	1,424,419 – 1,424,514	-	11	100	65.47	-1.88	0.57	0.998942
8765	dm3.chr3R	1,424,419 – 1,424,514		12036	1,424,422 – 1,424,514	-	11	97	64.07	-1.83	0.44	0.995584
8767	dm3.chr3R	1,445,841 – 1,445,936	- - - intron="intron;ID=intron_FBgn0044823:3_FBgn0044823:2;Name=Spec2-in;Parent=FBtr0078739;parent_type=mRNA" - - - -	12038	1,445,841 – 1,445,936	+	5	95	71.35	-1.77	0.62	0.959666
8769	dm3.chr3R	1,451,705 – 1,451,810	- - - - - - - -	12040	1,451,705 – 1,451,810	-	3	105	70.13	-2.38	0.60	0.970988
8771	dm3.chr3R	1,475,838 – 1,475,928	- - CDS="CDS;ID=CDS_FBgn0262125:5_94;Name=sec23-cds;Parent=FBtr0304793,FBtr0304794,FBtr0078710,FBtr0078711;parent_type=mRNA" - - - - -	12042	1,475,838 – 1,475,928	+	14	107	68.11	-1.96	0.38	0.957940
8778	dm3.chr3R	1,544,085 – 1,544,191	- - - - - - - -	12051	1,544,085 – 1,544,191	+	9	118	76.01	-1.64	0.65	0.959783
8778	dm3.chr3R	1,544,085 – 1,544,191	- - - - - - - -	12052	1,544,085 – 1,544,191	-	9	118	76.01	-1.53	0.65	0.941602
8780	dm3.chr3R	1,547,652 – 1,547,774	- - - - - - - -	12054	1,547,652 – 1,547,745	+	10	106	79.20	-2.24	0.63	0.979973
8781	dm3.chr3R	1,549,316 – 1,549,420	- - - - - - - -	12058	1,549,316 – 1,549,420	-	8	115	72.34	-1.64	0.63	0.961163
8782	dm3.chr3R	1,572,543 – 1,572,593	- - - - - - - -	12059	1,572,543 – 1,572,593	+	4	50	96.33	-0.92	1.06	0.900035
8783	dm3.chr3R	1,596,385 – 1,596,475	- - - intron="intron;ID=intron_FBgn0027608:16_FBgn0027608:14;Name=CG2082-in;Parent=FBtr0078675;parent_type=mRNA" - - - -	12061	1,596,385 – 1,596,475	+	8	109	65.44	-1.42	0.53	0.972913
8783	dm3.chr3R	1,596,385 – 1,596,475		12062	1,596,385 – 1,596,475	-	8	109	65.44	-1.35	0.47	0.912986
8784	dm3.chr3R	1,601,974 – 1,602,112	- - - - - - - -	12064	1,602,012 – 1,602,112	-	5	114	64.43	-1.13	0.55	0.931933
8788	dm3.chr3R	1,642,490 – 1,642,582	- - CDS="CDS;ID=CDS_FBgn0261561:5_213;Name=CG42675-cds;Parent=FBtr0302727;parent_type=mRNA" intron="intron;ID=intron_FBgn0261561:4_FBgn0261561:6;Name=CG42675-in;Parent=FBtr0302724,FBtr0303165;parent_type=mRNA" - - - -	12068	1,642,490 – 1,642,582	+	5	92	65.70	-2.01	0.57	0.994455
8788	dm3.chr3R	1,642,490 – 1,642,582		12069	1,642,490 – 1,642,582	-	5	92	65.70	-1.58	0.66	0.990324
8793	dm3.chr3R	1,708,849 – 1,708,943	- - - intron="intron;ID=intron_FBgn0083949:10_FBgn0083949:9;Name=CG34113-in;Parent=FBtr0110807;parent_type=mRNA" - - - -	12074	1,708,849 – 1,708,943	+	7	104	70.03	-2.62	0.31	0.908715
8797	dm3.chr3R	1,721,602 – 1,721,652	- - - intron="intron;ID=intron_FBgn0083949:18_FBgn0083949:17;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12079	1,721,602 – 1,721,652	+	11	56	81.08	-1.89	0.68	0.947273
8800	dm3.chr3R	1,748,789 – 1,748,882	- - - intron="intron;ID=intron_FBgn0083949:19_FBgn0083949:18;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12083	1,748,789 – 1,748,882	+	3	97	85.07	-2.49	0.73	0.922890
8800	dm3.chr3R	1,748,789 – 1,748,882		12084	1,748,789 – 1,748,882	-	3	97	85.07	-2.37	0.76	0.923040
8805	dm3.chr3R	1,760,118 – 1,760,239	- - - intron="intron;ID=intron_FBgn0083949:19_FBgn0083949:18;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12091	1,760,118 – 1,760,239	-	8	144	65.30	-1.81	0.39	0.912512
8809	dm3.chr3R	1,791,834 – 1,791,931	- - - - - - - -	12095	1,791,834 – 1,791,931	+	12	120	88.37	-1.92	1.00	0.987294
8809	dm3.chr3R	1,791,834 – 1,791,931	- - - - - - - -	12096	1,791,834 – 1,791,931	-	12	120	88.37	-1.82	0.94	0.966151
8810	dm3.chr3R	1,799,059 – 1,799,121	- - - - - - - -	12097	1,799,059 – 1,799,121	+	4	62	91.13	-2.64	0.76	0.925651
8811	dm3.chr3R	1,815,262 – 1,815,352	- - - - - - - -	12098	1,815,262 – 1,815,352	+	5	102	91.41	-2.59	0.86	0.975326
8812	dm3.chr3R	1,817,031 – 1,817,122	- - - - - - - -	12100	1,817,031 – 1,817,122	-	12	119	78.40	-1.66	0.70	0.955506
8815	dm3.chr3R	1,835,885 – 1,835,989	- - - - - - - -	12104	1,835,885 – 1,835,989	-	3	115	76.33	-2.68	0.60	0.965919
8825	dm3.chr3R	1,918,595 – 1,918,706	- - - intron="intron;ID=intron_FBgn0026077:3_FBgn0026077:1;Name=Gasp-in;Parent=FBtr0112922;parent_type=mRNA" - - - -	12115	1,918,595 – 1,918,700	+	4	112	74.03	-1.47	0.77	0.900144
8834	dm3.chr3R	1,964,436 – 1,964,554	- - - - - - - -	12127	1,964,436 – 1,964,554	-	5	120	79.29	-2.24	0.65	0.960022
8839	dm3.chr3R	2,041,848 – 2,041,924	- - - - - - - -	12133	2,041,848 – 2,041,924	-	4	87	67.48	-1.86	0.54	0.938187
8840	dm3.chr3R	2,050,222 – 2,050,277	- - - - - - - -	12134	2,050,222 – 2,050,277	+	3	55	92.73	-1.91	1.00	0.978281
8843	dm3.chr3R	2,061,756 – 2,061,899	- - CDS="CDS;ID=CDS_CG1151:2_70;Name=Osi6-cds;Parent=FBtr0078596;parent_type=mRNA" - - - - -	12137	2,061,756 – 2,061,899	+	7	143	69.98	-1.28	0.57	0.958315
8844	dm3.chr3R	2,088,321 – 2,088,372	- - - - - - - -	12138	2,088,321 – 2,088,372	-	5	62	79.86	-1.25	0.96	0.931597
8845	dm3.chr3R	2,093,712 – 2,093,869	- - CDS="CDS;ID=CDS_CG15596:1_76;Name=Osi11-cds;Parent=FBtr0078614;parent_type=mRNA" - - - - -	12139	2,093,712 – 2,093,832	-	15	121	76.98	-1.92	0.46	0.920421
8845	dm3.chr3R	2,093,712 – 2,093,869		12140	2,093,752 – 2,093,869	-	15	120	76.21	-1.22	0.62	0.931199
8850	dm3.chr3R	2,121,983 – 2,122,075	- - - - - - - -	12145	2,121,983 – 2,122,075	-	8	102	81.49	-2.52	0.57	0.944983
8852	dm3.chr3R	2,132,362 – 2,132,457	- - - - - - - -	12147	2,132,362 – 2,132,457	+	3	96	91.67	-4.00	0.86	0.998025
8853	dm3.chr3R	2,132,754 – 2,132,845	- - - - - - - -	12149	2,132,754 – 2,132,845	+	6	96	58.39	-2.24	0.35	0.995076
8854	dm3.chr3R	2,137,178 – 2,137,233	- - - - - - - -	12150	2,137,178 – 2,137,233	+	3	55	87.88	-3.19	0.71	0.978798
8854	dm3.chr3R	2,137,178 – 2,137,233	- - - - - - - -	12151	2,137,178 – 2,137,233	-	3	55	87.88	-2.58	0.79	0.952536
8855	dm3.chr3R	2,138,497 – 2,138,608	- - - - - - - -	12152	2,138,497 – 2,138,608	+	12	116	76.89	-2.61	0.45	0.983003
8856	dm3.chr3R	2,150,123 – 2,150,175	- - - intron="intron;ID=intron_CG15598:7_CG15598:8;Name=Osi17-in;Parent=FBtr0078610;parent_type=mRNA" - - - -	12155	2,150,123 – 2,150,175	-	4	58	76.90	-2.19	0.69	0.971849
8859	dm3.chr3R	2,239,062 – 2,239,194	- - - intron="intron;ID=intron_FBgn0261972:3_FBgn0261972:4;Name=gpp-in;Parent=FBtr0303787,FBtr0303789,FBtr0303790;parent_type=mRNA" - - - -	12159	2,239,097 – 2,239,194	-	4	97	97.77	-2.06	0.92	0.901557
8860	dm3.chr3R	2,245,102 – 2,245,183	- - - intron="intron;ID=intron_FBgn0261972:3_FBgn0261972:4;Name=gpp-in;Parent=FBtr0303787,FBtr0303789,FBtr0303790;parent_type=mRNA" - - - -	12160	2,245,102 – 2,245,183	+	5	85	91.15	-2.77	0.71	0.912481
8862	dm3.chr3R	2,257,753 – 2,257,878	- - - intron="intron;ID=intron_FBgn0261972:3_FBgn0261972:4;Name=gpp-in;Parent=FBtr0303787,FBtr0303789,FBtr0303790;parent_type=mRNA" - - - -	12162	2,257,753 – 2,257,878	-	6	128	71.48	-1.42	0.62	0.961216
8865	dm3.chr3R	2,270,222 – 2,270,319	- - - intron="intron;ID=intron_FBgn0261972:9_FBgn0261972:11;Name=gpp-in;Parent=FBtr0303790;parent_type=mRNA" - - - -	12165	2,270,222 – 2,270,319	-	5	97	85.57	-1.98	0.80	0.918606
8867	dm3.chr3R	2,310,440 – 2,310,530	- - - intron="intron;ID=intron_CG15186:1_CG15186:2;Name=CG15186-in;Parent=FBtr0081672,FBtr0081674;parent_type=mRNA" - - - -	12167	2,310,440 – 2,310,530	-	13	106	68.87	-0.68	0.60	0.905957
8877	dm3.chr3R	2,356,638 – 2,356,753	- - - - - - - -	12180	2,356,638 – 2,356,753	+	4	115	87.97	-3.03	0.76	0.985700
8878	dm3.chr3R	2,362,261 – 2,362,317	- - - intron="intron;ID=intron_CG33202:5_CG33202:6;Name=dpr11-in;Parent=FBtr0081704;parent_type=mRNA" - - - -	12181	2,362,261 – 2,362,317	-	4	58	79.46	-2.37	0.61	0.923403
8880	dm3.chr3R	2,372,670 – 2,372,747	- - - intron="intron;ID=intron_CG33202:2_CG33202:3;Name=dpr11-in;Parent=FBtr0081704;parent_type=mRNA" - - - -	12183	2,372,670 – 2,372,747	+	11	95	71.47	-1.99	0.48	0.974861
8885	dm3.chr3R	2,420,417 – 2,420,549	- - - - - - - -	12189	2,420,417 – 2,420,513	+	10	119	64.40	-1.28	0.52	0.979617
				12190	2,420,417 – 2,420,513	-	10	119	64.40	-3.44	0.71	0.999940
				12191	2,420,433 – 2,420,549	-	12	123	79.18	-2.98	0.49	0.993616
8887	dm3.chr3R	2,425,404 – 2,425,516	- - - - - - - -	12194	2,425,412 – 2,425,516	+	6	110	72.64	-1.79	0.54	0.952477
8887	dm3.chr3R	2,425,404 – 2,425,516	- - - - - - - -	12195	2,425,412 – 2,425,516	-	6	110	72.64	-1.94	0.55	0.975450
8890	dm3.chr3R	2,437,710 – 2,437,859	- - - - - - - -	12199	2,437,747 – 2,437,859	-	7	113	73.39	-2.00	0.45	0.921091
8891	dm3.chr3R	2,440,332 – 2,440,428	- - - - - - - -	12200	2,440,332 – 2,440,428	-	3	100	87.50	-3.58	0.79	0.996199
8893	dm3.chr3R	2,442,959 – 2,443,078	- - - - - - - -	12203	2,442,977 – 2,443,078	-	6	105	75.08	-1.82	0.59	0.922799
8895	dm3.chr3R	2,469,912 – 2,470,016	- - CDS="CDS;ID=CDS_FBgn0026565:3_230;Name=CG1315-cds;Parent=FBtr0081699;parent_type=mRNA" - - - - -	12205	2,469,912 – 2,470,016	-	13	121	62.47	-1.51	0.38	0.902386
8897	dm3.chr3R	2,493,189 – 2,493,302	- - - intron="intron;ID=intron_CG1264:1_CG1264:2;Name=lab-in;Parent=FBtr0081696;parent_type=mRNA" - - - -	12207	2,493,189 – 2,493,281	+	6	93	93.28	-4.05	0.79	0.997514
8897	dm3.chr3R	2,493,189 – 2,493,302		12208	2,493,203 – 2,493,302	+	6	100	91.87	-2.61	0.80	0.955971
8900	dm3.chr3R	2,584,296 – 2,584,404	- - - intron="intron;ID=intron_FBgn0000166:6_FBgn0000166:5;Name=bcd-in;Parent=FBtr0081666,FBtr0081667;parent_type=mRNA" - - - -	12212	2,584,296 – 2,584,404	+	5	110	66.95	-1.21	0.68	0.968233
8901	dm3.chr3R	2,594,064 – 2,594,212	FBnoncoding="ncRNA;ID=FBtr0303008;Name=CR42721-RA;Parent=FBgn0261638;Dbxref=FlyBase_Annotation_IDs:CR42721-RA;score_text=Weakly" - - - - - - -	12214	2,594,064 – 2,594,172	+	6	112	63.67	-1.76	0.40	0.955405
				12216	2,594,104 – 2,594,212	+	6	110	67.43	-1.80	0.56	0.992641
				12217	2,594,104 – 2,594,212	-	6	110	67.43	-1.26	0.64	0.980313
8902	dm3.chr3R	2,602,056 – 2,602,166	FBnoncoding="pre_miRNA;ID=FBtr0304176;Name=mir-993-RM;Parent=FBgn0262174;Alias=CR42881-RM;Dbxref=FlyBase_Annotation_IDs:CR42881-RM,miRBase:MI0005854" - - - - - - "mirBase_v16=dme-mir-993\|2.0e-58"	12218	2,602,056 – 2,602,166	+	13	112	83.07	-4.42	0.71	0.999690
8902	dm3.chr3R	2,602,056 – 2,602,166		12219	2,602,056 – 2,602,166	-	13	112	83.07	-1.96	0.76	0.962993
8905	dm3.chr3R	2,635,223 – 2,635,327	FBnoncoding="pre_miRNA;ID=FBtr0304380;Name=mir-10-RM;Parent=FBgn0262424;Alias=CR42977-RM;Dbxref=FlyBase_Annotation_IDs:CR42977-RM,miRBase:MI0000130" - - - "Rfam_10.0=RF00104;mir-10;AAPT01019387.1/166139-166214\|1.2e-31" "Noncode_2.0=n178679_u177777_NW_045723_miRNA_Anopheles\|5.5e-09" "unique_Noncode_2.0=u177777_miRNA_Anopheles\|4.8e-09" "mirBase_v16=dsi-mir-10\|9.4e-39"	12222	2,635,223 – 2,635,327	+	15	108	78.71	-3.09	0.76	0.999378
8905	dm3.chr3R	2,635,223 – 2,635,327		12223	2,635,223 – 2,635,327	-	15	108	78.71	-4.55	0.91	0.999097
8906	dm3.chr3R	2,640,527 – 2,640,624	- - - - - - - -	12224	2,640,527 – 2,640,624	-	4	118	56.39	-1.70	0.41	0.977620
8907	dm3.chr3R	2,644,964 – 2,645,074	- - - - - - - -	12225	2,644,964 – 2,645,064	+	8	108	63.92	-1.76	0.48	0.993401
8908	dm3.chr3R	2,645,933 – 2,646,093	FBnoncoding="ncRNA;ID=FBtr0302398;Name=CR42652-RA;Parent=FBgn0261504;Dbxref=FlyBase_Annotation_IDs:CR42652-RA;score_text=Weakly" - - - "Rfam_10.0=RF00017;SRP_euk_arch;AAPQ01006440.1/464918-465212\|2.4e-86" "Noncode_2.0=n5338_u4689_X00952_SRP_7SL\|2.4e-86" "unique_Noncode_2.0=u4689_SRP_7SL\|2.1e-86" -	12229	2,645,933 – 2,646,053	-	13	120	95.87	-2.52	0.92	0.981552
8909	dm3.chr3R	2,646,789 – 2,646,880	FBnoncoding="tRNA;ID=FBtr0081661;Name=tRNA:K5:84ABc-RA;Parent=FBgn0026163;Dbxref=FlyBase_Annotation_IDs:CR31487-RA;score_text=Weakly" tRNAscann="Lys_chr3R_trna78" - - "Rfam_10.0=RF00005;tRNA;AAJJ01001092.1/1840-1912\|6.1e-30" "Noncode_2.0=n103595_u102693_DQ614086_piRNA_Norway\|2.9e-07" "unique_Noncode_2.0=u102692_piRNA_Norway\|2.5e-07" -	12231	2,646,789 – 2,646,880	+	13	95	73.74	-2.65	0.90	0.998708
8909	dm3.chr3R	2,646,789 – 2,646,880		12232	2,646,789 – 2,646,880	-	13	95	73.74	-2.61	0.88	0.998849
8910	dm3.chr3R	2,647,500 – 2,647,590	FBnoncoding="tRNA;ID=FBtr0081623;Name=tRNA:K5:84ABb-RA;Parent=FBgn0026164;Dbxref=FlyBase_Annotation_IDs:CR31489-RA;score_text=Weakly" tRNAscann="Lys_chr3R_trna3" - - "Rfam_10.0=RF00005;tRNA;AAJJ01001092.1/1840-1912\|6.0e-30" "Noncode_2.0=n103595_u102693_DQ614086_piRNA_Norway\|2.8e-07" "unique_Noncode_2.0=u102692_piRNA_Norway\|2.5e-07" -	12233	2,647,500 – 2,647,590	+	11	98	75.47	-2.54	0.86	0.998759
8910	dm3.chr3R	2,647,500 – 2,647,590		12234	2,647,500 – 2,647,590	-	11	98	75.47	-3.02	0.84	0.999411
8911	dm3.chr3R	2,648,318 – 2,648,438	FBnoncoding="ncRNA;ID=FBtr0081624;Name=7SLRNA-RA;Parent=FBgn0000003;Dbxref=FlyBase_Annotation_IDs:CR32864-RA,REFSEQ:NR_001992;score_text=Weakly" - - - "Rfam_10.0=RF00017;SRP_euk_arch;AAPQ01006440.1/464918-465212\|1.3e-62" "Noncode_2.0=n5338_u4689_X00952_SRP_7SL\|1.3e-62" "unique_Noncode_2.0=u4689_SRP_7SL\|1.1e-62" -	12235	2,648,318 – 2,648,438	+	13	120	95.99	-2.50	0.89	0.968541
8912	dm3.chr3R	2,648,680 – 2,648,766	FBnoncoding="tRNA;ID=FBtr0081660;Name=tRNA:K5:84ABa-RA;Parent=FBgn0011904;Dbxref=FlyBase_Annotation_IDs:CR31486-RA;score_text=Weakly" tRNAscann="Lys_chr3R_trna77" - - "Rfam_10.0=RF00005;tRNA;AAJJ01001092.1/1840-1912\|5.7e-30" "Noncode_2.0=n103595_u102693_DQ614086_piRNA_Norway\|2.7e-07" "unique_Noncode_2.0=u102692_piRNA_Norway\|2.3e-07" -	12236	2,648,680 – 2,648,766	+	14	94	75.88	-3.27	0.95	0.998602
8912	dm3.chr3R	2,648,680 – 2,648,766		12237	2,648,680 – 2,648,766	-	14	94	75.88	-3.00	0.85	0.999295
8914	dm3.chr3R	2,656,800 – 2,656,919	- - - intron="intron;ID=intron_FBgn0003339:2_FBgn0003339:1;Name=Scr-in;Parent=FBtr0081657,FBtr0081658;parent_type=mRNA" - - - -	12241	2,656,829 – 2,656,919	+	12	110	79.41	-3.14	0.41	0.984313
8915	dm3.chr3R	2,658,187 – 2,658,277	- - - intron="intron;ID=intron_FBgn0003339:2_FBgn0003339:1;Name=Scr-in;Parent=FBtr0081657,FBtr0081658;parent_type=mRNA" - - - -	12243	2,658,187 – 2,658,277	+	9	115	86.25	-2.67	0.84	0.991209
8918	dm3.chr3R	2,674,137 – 2,674,290	- - - - - - - -	12246	2,674,137 – 2,674,290	+	8	177	76.46	-2.17	0.55	0.976843
8919	dm3.chr3R	2,674,531 – 2,674,646	- - - - - - - -	12248	2,674,531 – 2,674,646	+	9	117	61.35	-1.97	0.28	0.944920
8920	dm3.chr3R	2,683,486 – 2,683,600	- - - - - - - -	12249	2,683,486 – 2,683,576	+	12	111	77.45	-2.21	0.52	0.952089
8920	dm3.chr3R	2,683,486 – 2,683,600	- - - - - - - -	12250	2,683,509 – 2,683,600	+	12	112	77.92	-2.73	0.50	0.981933
8926	dm3.chr3R	2,715,409 – 2,715,502	- - - - - - - -	12256	2,715,409 – 2,715,502	-	11	115	77.70	-2.75	0.51	0.991843
8927	dm3.chr3R	2,717,882 – 2,717,976	- - - - - - - -	12257	2,717,882 – 2,717,976	+	6	94	97.52	-2.15	0.91	0.917188
8929	dm3.chr3R	2,736,041 – 2,736,138	- - - - - - - -	12260	2,736,041 – 2,736,138	+	5	97	88.87	-2.47	0.74	0.921541
8929	dm3.chr3R	2,736,041 – 2,736,138	- - - - - - - -	12261	2,736,041 – 2,736,138	-	5	97	88.87	-2.77	0.72	0.958148
8938	dm3.chr3R	2,787,507 – 2,787,606	- - - - - - - -	12270	2,787,507 – 2,787,606	+	6	113	69.23	-1.83	0.48	0.946889
8939	dm3.chr3R	2,788,718 – 2,788,781	- - - - - - - -	12271	2,788,718 – 2,788,781	+	4	63	78.31	-2.78	0.47	0.923011
8940	dm3.chr3R	2,791,431 – 2,791,493	- - - - - - - -	12272	2,791,431 – 2,791,493	+	8	62	84.48	-2.14	0.91	0.987843
8942	dm3.chr3R	2,813,972 – 2,814,062	- - - intron="intron;ID=intron_CG1028:7_CG1028:8;Name=Antp-in;Parent=FBtr0081647,FBtr0081649,FBtr0081650,FBtr0081651,FBtr0081654;parent_type=mRNA" - - - -	12274	2,813,972 – 2,814,062	+	5	90	98.44	-1.99	0.97	0.948627
8945	dm3.chr3R	2,837,111 – 2,837,216	- - - - - - - -	12278	2,837,111 – 2,837,214	+	11	109	77.96	-2.25	0.47	0.940068
				12279	2,837,111 – 2,837,214	-	11	109	77.96	-2.20	0.52	0.965163
				12280	2,837,111 – 2,837,216	+	10	109	78.82	-2.24	0.47	0.912158
				12281	2,837,111 – 2,837,216	-	10	109	78.82	-2.02	0.54	0.932277
8947	dm3.chr3R	2,853,169 – 2,853,278	- - - - - - - -	12284	2,853,169 – 2,853,278	+	5	109	79.74	-2.55	0.60	0.971911
8948	dm3.chr3R	2,862,001 – 2,862,097	- - - - - - - -	12285	2,862,001 – 2,862,097	+	7	116	62.60	-1.93	0.54	0.997948
8948	dm3.chr3R	2,862,001 – 2,862,097	- - - - - - - -	12286	2,862,001 – 2,862,097	-	7	116	62.60	-1.12	0.47	0.905001
8956	dm3.chr3R	2,956,655 – 2,956,744	FBnoncoding="tRNA;ID=FBtr0081610;Name=tRNA:CR31491-RA;Parent=FBgn0051491;Alias=CR31491-RA;Dbxref=FlyBase_Annotation_IDs:CR31491-RA;score_text=Weakly" tRNAscann="Gly_chr3R_trna76" - - "Rfam_10.0=RF00005;tRNA;ABJB010436523.1/406-477\|5.7e-27" - - -	12295	2,956,655 – 2,956,744	+	13	106	80.25	-2.19	0.79	0.990849
8956	dm3.chr3R	2,956,655 – 2,956,744		12296	2,956,655 – 2,956,744	-	13	106	80.25	-1.89	0.92	0.988532
8958	dm3.chr3R	2,975,666 – 2,975,760	- - - intron="intron;ID=intron_FBgn0053546:5_FBgn0053546:4;Name=gfzf-in;Parent=FBtr0091512;parent_type=mRNA" - - - -	12298	2,975,666 – 2,975,760	+	5	103	59.65	-1.25	0.43	0.921447
8959	dm3.chr3R	2,980,960 – 2,981,026	- - - - - - - -	12299	2,980,960 – 2,981,026	-	5	66	83.33	-2.39	0.71	0.962797
8960	dm3.chr3R	2,987,961 – 2,988,024	- - - - - - - -	12301	2,987,961 – 2,988,024	-	6	63	65.71	-1.51	0.44	0.951349
8962	dm3.chr3R	3,006,335 – 3,006,447	- - CDS="CDS;ID=CDS_FBgn0002306:8_45;Name=sas-cds;Parent=FBtr0081570;parent_type=mRNA" - - - - -	12303	3,006,335 – 3,006,447	+	7	113	68.22	-2.14	0.38	0.973032
8962	dm3.chr3R	3,006,335 – 3,006,447		12304	3,006,335 – 3,006,447	-	7	113	68.22	-2.05	0.42	0.983272
8964	dm3.chr3R	3,018,480 – 3,018,577	- - CDS="CDS;ID=CDS_FBgn0086372:12_242;Name=lap-cds;Parent=FBtr0305153;parent_type=mRNA" - - - - -	12306	3,018,480 – 3,018,577	+	15	112	73.31	-3.58	0.19	0.965198
8964	dm3.chr3R	3,018,480 – 3,018,577		12307	3,018,480 – 3,018,577	-	15	112	73.31	-2.70	0.28	0.923553
8968	dm3.chr3R	3,039,022 – 3,039,136	- - - - - - - -	12311	3,039,022 – 3,039,136	-	11	119	73.05	-2.50	0.40	0.954060
8980	dm3.chr3R	3,135,188 – 3,135,310	- - - - - - - -	12325	3,135,213 – 3,135,310	+	5	97	94.64	-3.13	0.91	0.994311
8980	dm3.chr3R	3,135,188 – 3,135,310	- - - - - - - -	12326	3,135,213 – 3,135,310	-	5	97	94.64	-1.96	0.93	0.935813
8989	dm3.chr3R	3,181,920 – 3,182,047	- - - - - - - -	12338	3,181,920 – 3,182,024	+	8	121	75.85	-2.01	0.63	0.974456
8990	dm3.chr3R	3,186,567 – 3,186,662	- - - - - - - -	12340	3,186,567 – 3,186,662	+	7	111	77.57	-2.49	0.60	0.986877
8993	dm3.chr3R	3,229,454 – 3,229,547	- - - - - - - -	12343	3,229,454 – 3,229,547	+	12	116	74.03	-2.65	0.48	0.994196
8995	dm3.chr3R	3,247,908 – 3,248,068	- - CDS="CDS;ID=CDS_FBgn0037502:6_192;Name=wa-cup-cds;Parent=FBtr0301649;parent_type=mRNA" - - - - -	12346	3,247,908 – 3,248,028	+	12	120	85.20	-2.97	0.56	0.980253
8995	dm3.chr3R	3,247,908 – 3,248,068		12347	3,247,908 – 3,248,028	-	12	120	85.20	-2.62	0.65	0.978046
8999	dm3.chr3R	3,267,990 – 3,268,222	- - - - - - - -	12354	3,268,130 – 3,268,222	+	4	92	94.93	-2.06	0.94	0.951384
9003	dm3.chr3R	3,311,414 – 3,311,601	- - - - - - - -	12359	3,311,414 – 3,311,533	-	5	120	86.98	-2.14	0.88	0.966233
9006	dm3.chr3R	3,356,816 – 3,356,874	- - - intron="intron;ID=intron_CG2512:2_CG2512:3;Name=alphaTub84D-in;Parent=FBtr0081539;parent_type=mRNA" - - - -	12365	3,356,816 – 3,356,874	+	5	58	94.14	-2.87	0.94	0.993606
9006	dm3.chr3R	3,356,816 – 3,356,874		12366	3,356,816 – 3,356,874	-	5	58	94.14	-2.27	0.92	0.966331
9013	dm3.chr3R	3,418,540 – 3,418,631	- - - intron="intron;ID=intron_FBgn0083963:10_FBgn0083963:9;Name=CG34127-in;Parent=FBtr0301072;parent_type=mRNA" - - - -	12375	3,418,540 – 3,418,631	+	8	94	69.63	-1.59	0.49	0.958758
9013	dm3.chr3R	3,418,540 – 3,418,631		12376	3,418,540 – 3,418,631	-	8	94	69.63	-1.78	0.47	0.970923
9015	dm3.chr3R	3,425,858 – 3,425,986	- - - intron="intron;ID=intron_FBgn0083963:11_FBgn0083963:10;Name=CG34127-in;Parent=FBtr0301072;parent_type=mRNA" - - - -	12378	3,425,858 – 3,425,965	-	9	116	70.66	-2.68	0.37	0.990178
9015	dm3.chr3R	3,425,858 – 3,425,986		12379	3,425,893 – 3,425,986	-	10	111	74.40	-2.81	0.40	0.986588
9016	dm3.chr3R	3,442,122 – 3,442,172	- - - intron="intron;ID=intron_FBgn0083963:13_FBgn0083963:12;Name=CG34127-in;Parent=FBtr0301072;parent_type=mRNA" - - - -	12380	3,442,122 – 3,442,172	-	4	50	96.00	-2.92	0.85	0.974095
9017	dm3.chr3R	3,452,658 – 3,452,754	- - - intron="intron;ID=intron_FBgn0083963:13_FBgn0083963:12;Name=CG34127-in;Parent=FBtr0301072;parent_type=mRNA" - - - -	12381	3,452,658 – 3,452,754	-	8	118	72.30	-2.94	0.35	0.978418
9020	dm3.chr3R	3,477,156 – 3,477,212	- - - - - - - -	12384	3,477,156 – 3,477,212	+	4	56	94.64	-2.68	0.86	0.967040
9023	dm3.chr3R	3,500,291 – 3,500,383	- - - intron="intron;ID=intron_FBgn0051146:8_FBgn0051146:9;Name=Nlg1-in;Parent=FBtr0081541,FBtr0305969;parent_type=mRNA" - - - -	12387	3,500,291 – 3,500,383	-	9	109	63.99	-1.59	0.44	0.977103
9026	dm3.chr3R	3,546,981 – 3,547,061	- - - - - - - -	12391	3,546,981 – 3,547,061	-	7	81	67.98	-1.40	0.47	0.934988
9035	dm3.chr3R	3,634,968 – 3,635,059	- - - - - - - -	12400	3,634,968 – 3,635,059	-	6	95	72.57	-1.10	0.72	0.911909
9040	dm3.chr3R	3,680,234 – 3,680,320	- - - - - - - -	12408	3,680,234 – 3,680,320	+	10	92	57.77	-2.55	0.24	0.993506
9049	dm3.chr3R	3,755,885 – 3,755,955	- - - - - - - -	12417	3,755,885 – 3,755,955	+	9	73	87.89	-2.13	0.79	0.931051
9050	dm3.chr3R	3,760,297 – 3,760,388	- - - intron="intron;ID=intron_CG11094:3_CG11094:4;Name=dsx-in;Parent=FBtr0081759;parent_type=mRNA" - - - -	12419	3,760,297 – 3,760,388	+	3	93	91.34	-1.30	1.02	0.936662
9051	dm3.chr3R	3,761,274 – 3,761,385	- - CDS="CDS;ID=CDS_CG11094:6_25;Name=dsx-cds;Parent=FBtr0081760,FBtr0081761;parent_type=mRNA" intron="intron;ID=intron_CG11094:3_CG11094:4;Name=dsx-in;Parent=FBtr0081759;parent_type=mRNA" - - - -	12420	3,761,274 – 3,761,385	-	14	120	83.90	-1.99	0.67	0.920706
9054	dm3.chr3R	3,795,274 – 3,795,338	- - - - - - - -	12423	3,795,274 – 3,795,338	+	4	74	80.70	-2.61	0.70	0.979069
9055	dm3.chr3R	3,806,209 – 3,806,270	- - - - - - - -	12425	3,806,209 – 3,806,270	-	4	63	87.80	-2.71	0.87	0.989902
9056	dm3.chr3R	3,817,973 – 3,818,068	- - - intron="intron;ID=intron_CG2781:1_CG2781:2;Name=CG2781-in;Parent=FBtr0081823;parent_type=mRNA" - - - -	12426	3,817,973 – 3,818,068	-	3	97	81.36	-2.70	0.74	0.977753
9059	dm3.chr3R	3,837,979 – 3,838,097	- - CDS="CDS;ID=CDS_CG10435:1_46;Name=CG10435-cds;Parent=FBtr0081820;parent_type=mRNA" - - - - -	12429	3,837,979 – 3,838,097	+	10	120	59.16	-1.73	0.28	0.934793
9060	dm3.chr3R	3,853,953 – 3,854,061	- - - - - - - -	12430	3,853,953 – 3,854,052	-	4	99	86.20	-3.28	0.65	0.985945
9060	dm3.chr3R	3,853,953 – 3,854,061	- - - - - - - -	12431	3,853,962 – 3,854,061	-	4	99	85.35	-3.62	0.59	0.992024
9062	dm3.chr3R	3,883,823 – 3,883,876	- - - - - - - -	12433	3,883,823 – 3,883,876	+	8	53	92.32	-2.70	0.94	0.993584
9063	dm3.chr3R	3,889,295 – 3,889,359	- - - intron="intron;ID=intron_CG7918:1_CG7918:2;Name=CG7918-in;Parent=FBtr0081789;parent_type=mRNA" - - - -	12435	3,889,295 – 3,889,359	-	11	64	77.77	-3.00	0.50	0.997040
9064	dm3.chr3R	3,892,231 – 3,892,326	- - - intron="intron;ID=intron_CG7918:1_CG7918:2;Name=CG7918-in;Parent=FBtr0081789;parent_type=mRNA" - - - -	12436	3,892,231 – 3,892,326	+	7	95	69.28	-2.70	0.65	0.999213
9064	dm3.chr3R	3,892,231 – 3,892,326		12437	3,892,231 – 3,892,326	-	7	95	69.28	-3.02	0.54	0.999252
9072	dm3.chr3R	3,933,592 – 3,933,691	- - - intron="intron;ID=intron_CG7850:1_CG7850:2;Name=puc-in;Parent=FBtr0081792;parent_type=mRNA" - - - -	12445	3,933,592 – 3,933,691	+	5	101	95.59	-3.14	0.96	0.996400
9072	dm3.chr3R	3,933,592 – 3,933,691		12446	3,933,592 – 3,933,691	-	5	101	95.59	-3.53	0.98	0.998223
9077	dm3.chr3R	3,966,447 – 3,966,523	FBnoncoding="tRNA;ID=FBtr0081810;Name=tRNA:R2:84Fb-RA;Parent=FBgn0011960;Dbxref=FlyBase_Annotation_IDs:CR31566-RA;score_text=Weakly" tRNAscann="Arg_chr3R_trna69" - - "Rfam_10.0=RF00005;tRNA;AAPU01010262.1/58672-58744\|2.0e-32" "Noncode_2.0=n144358_u143456_DQ573323_piRNA_human\|5.8e-08" "unique_Noncode_2.0=u143456_piRNA_human\|5.0e-08" -	12451	3,966,447 – 3,966,523	+	13	88	68.63	-2.06	0.90	0.997761
9077	dm3.chr3R	3,966,447 – 3,966,523		12452	3,966,447 – 3,966,523	-	13	88	68.63	-1.83	0.91	0.996458
9078	dm3.chr3R	3,966,690 – 3,966,774	FBnoncoding="tRNA;ID=FBtr0081809;Name=tRNA:R2:84Fa-RA;Parent=FBgn0011959;Dbxref=FlyBase_Annotation_IDs:CR31581-RA;score_text=Weakly" tRNAscann="Arg_chr3R_trna68" - - "Rfam_10.0=RF00005;tRNA;AAPU01010262.1/58672-58744\|2.3e-32" "Noncode_2.0=n144358_u143456_DQ573323_piRNA_human\|6.6e-08" "unique_Noncode_2.0=u143456_piRNA_human\|5.7e-08" -	12453	3,966,690 – 3,966,774	+	11	97	84.71	-1.44	0.95	0.955277
9078	dm3.chr3R	3,966,690 – 3,966,774		12454	3,966,690 – 3,966,774	-	11	97	84.71	-1.28	0.97	0.942519
9083	dm3.chr3R	3,987,719 – 3,987,769	- - - intron="intron;ID=intron_FBgn0001138:6_FBgn0001138:5;Name=grn-in;Parent=FBtr0300040;parent_type=mRNA" - - - -	12461	3,987,719 – 3,987,769	+	7	54	84.36	-3.32	0.69	0.996333
9084	dm3.chr3R	3,992,840 – 3,992,950	- - CDS="CDS;ID=CDS_FBgn0001138:6_162;Name=grn-cds;Parent=FBtr0300040;parent_type=mRNA" - - - - -	12463	3,992,840 – 3,992,950	+	6	113	65.03	-1.74	0.48	0.983301
9087	dm3.chr3R	4,020,428 – 4,020,518	- - - - - - - -	12466	4,020,428 – 4,020,518	+	5	114	68.11	-1.68	0.72	0.979783
9093	dm3.chr3R	4,026,137 – 4,026,253	- - - - - - - -	12474	4,026,137 – 4,026,233	-	9	102	75.11	-1.21	0.67	0.914496
9102	dm3.chr3R	4,102,431 – 4,102,496	- - - - - - - -	12485	4,102,431 – 4,102,496	+	12	83	65.40	-1.33	0.47	0.943880
9102	dm3.chr3R	4,102,431 – 4,102,496	- - - - - - - -	12486	4,102,431 – 4,102,496	-	12	83	65.40	-1.49	0.50	0.981203
9103	dm3.chr3R	4,103,381 – 4,103,474	- - - - - - - -	12487	4,103,381 – 4,103,474	+	6	94	86.18	-2.64	0.81	0.989571
9103	dm3.chr3R	4,103,381 – 4,103,474	- - - - - - - -	12488	4,103,381 – 4,103,474	-	6	94	86.18	-2.95	0.82	0.995330
9105	dm3.chr3R	4,106,321 – 4,106,422	- - - - - - - -	12491	4,106,321 – 4,106,422	-	12	111	84.06	-2.41	0.65	0.965653
9106	dm3.chr3R	4,124,310 – 4,124,422	- - CDS="CDS;ID=CDS_CG9626:4_89;Name=CG9626-cds;Parent=FBtr0081864;parent_type=mRNA" - - - - -	12492	4,124,310 – 4,124,422	-	12	115	70.61	-1.46	0.43	0.914037
9108	dm3.chr3R	4,157,458 – 4,157,549	- - - - - - - -	12494	4,157,458 – 4,157,549	-	10	109	77.95	-2.04	0.57	0.948151
9109	dm3.chr3R	4,163,525 – 4,163,627	- - - - - - - -	12495	4,163,525 – 4,163,627	+	8	114	78.22	-2.33	0.67	0.985222
9110	dm3.chr3R	4,181,714 – 4,181,844	- - - - - - - -	12496	4,181,714 – 4,181,818	+	4	105	91.55	-1.99	0.93	0.955509
9118	dm3.chr3R	4,248,613 – 4,248,664	- - - - - - - -	12507	4,248,613 – 4,248,664	+	4	55	72.47	-1.95	0.65	0.957940
9124	dm3.chr3R	4,302,696 – 4,302,789	- - - intron="intron;ID=intron_FBgn0250829:16_FBgn0250829:15;Name=CG31369-in;Parent=FBtr0301971;parent_type=mRNA" - - - -	12514	4,302,696 – 4,302,789	+	6	95	84.38	-2.07	0.72	0.909196
9124	dm3.chr3R	4,302,696 – 4,302,789		12515	4,302,696 – 4,302,789	-	6	95	84.38	-2.86	0.85	0.996211
9126	dm3.chr3R	4,310,968 – 4,311,058	- - - - - - - -	12517	4,310,968 – 4,311,058	+	6	94	87.66	-2.01	0.90	0.969113
9131	dm3.chr3R	4,357,658 – 4,357,802	- - - - - - - -	12523	4,357,658 – 4,357,802	+	5	156	87.58	-3.42	0.71	0.993270
9133	dm3.chr3R	4,359,607 – 4,359,702	- - - - - - - -	12525	4,359,607 – 4,359,702	+	4	120	84.72	-2.36	0.80	0.971929
9134	dm3.chr3R	4,366,282 – 4,366,404	- - - - - - - -	12526	4,366,282 – 4,366,386	+	11	108	70.87	-1.74	0.43	0.960839
9134	dm3.chr3R	4,366,282 – 4,366,404	- - - - - - - -	12527	4,366,282 – 4,366,386	-	11	108	70.87	-1.41	0.47	0.940005
9135	dm3.chr3R	4,373,619 – 4,373,728	- - - - - - - -	12530	4,373,619 – 4,373,728	+	6	109	79.25	-1.84	0.63	0.904311
9140	dm3.chr3R	4,392,743 – 4,392,814	- - CDS="CDS;ID=CDS_FBgn0051258:4_105;Name=Cenp-C-cds;Parent=FBtr0089973;parent_type=mRNA" - - - - -	12538	4,392,743 – 4,392,814	-	4	71	88.26	-1.88	0.87	0.907672
9141	dm3.chr3R	4,410,021 – 4,410,131	- - - intron="intron;ID=intron_FBgn0261929:1_FBgn0261929:2;Name=CG42796-in;Parent=FBtr0303603;parent_type=mRNA" - - - -	12539	4,410,021 – 4,410,131	+	9	116	76.36	-2.65	0.66	0.996949
9142	dm3.chr3R	4,416,376 – 4,416,453	- - - intron="intron;ID=intron_FBgn0261929:1_FBgn0261929:2;Name=CG42796-in;Parent=FBtr0303603;parent_type=mRNA" - - - -	12540	4,416,376 – 4,416,453	+	8	85	77.39	-1.87	0.63	0.937690
9150	dm3.chr3R	4,506,436 – 4,506,628	- - - - - - - -	12549	4,506,436 – 4,506,531	+	7	109	63.01	-2.48	0.37	0.994541
9151	dm3.chr3R	4,520,036 – 4,520,134	- - - intron="intron;ID=intron_CG9786:3_CG9786:2;Name=hb-in;Parent=FBtr0081951;parent_type=mRNA" - - - -	12551	4,520,036 – 4,520,134	-	5	98	84.04	-3.69	0.79	0.998590
9155	dm3.chr3R	4,525,078 – 4,525,172	- - - - - - - -	12555	4,525,078 – 4,525,172	+	9	99	70.83	-2.07	0.39	0.947782
9155	dm3.chr3R	4,525,078 – 4,525,172	- - - - - - - -	12556	4,525,078 – 4,525,172	-	9	99	70.83	-1.98	0.38	0.916322
9159	dm3.chr3R	4,536,803 – 4,536,942	- - - intron="intron;ID=intron_FBgn0037612:2_FBgn0037612:3;Name=CG8112-in;Parent=FBtr0081904;parent_type=mRNA" - - - -	12560	4,536,803 – 4,536,908	+	11	111	75.77	-2.04	0.58	0.990856
9160	dm3.chr3R	4,564,816 – 4,564,876	- - - intron="intron;ID=intron_FBgn0037623:3_FBgn0037623:2;Name=CG9801-in;Parent=FBtr0081945;parent_type=mRNA" - - - -	12562	4,564,816 – 4,564,876	-	8	61	83.99	-2.66	0.70	0.988381
9169	dm3.chr3R	4,612,868 – 4,612,918	- - - intron="intron;ID=intron_FBgn0261015:13_FBgn0261015:12;Name=Pif1A-in;Parent=FBtr0301876,FBtr0301877;parent_type=mRNA" - - - -	12572	4,612,868 – 4,612,918	-	5	50	94.80	-2.16	0.97	0.979270
9170	dm3.chr3R	4,615,476 – 4,615,657	- - - intron="intron;ID=intron_FBgn0261015:13_FBgn0261015:12;Name=Pif1A-in;Parent=FBtr0301876,FBtr0301877;parent_type=mRNA" - - - -	12573	4,615,476 – 4,615,657	+	6	183	90.43	-2.94	0.77	0.981742
9171	dm3.chr3R	4,623,464 – 4,623,559	- - CDS="CDS;ID=CDS_FBgn0261015:18_4;Name=Pif1A-cds;Parent=FBtr0304160;parent_type=mRNA" - - - - -	12574	4,623,464 – 4,623,559	+	8	107	67.35	-1.69	0.40	0.913081
9172	dm3.chr3R	4,662,765 – 4,662,871	- - CDS="CDS;ID=CDS_FBgn0262614:13_256;Name=pyd-cds;Parent=FBtr0305303;parent_type=mRNA" intron="intron;ID=intron_FBgn0262614:14_FBgn0262614:12;Name=pyd-in;Parent=FBtr0305293,FBtr0305294,FBtr0305295,FBtr0305298,FBtr0305301;parent_type=mRNA" - - - -	12575	4,662,765 – 4,662,871	+	3	106	72.33	-2.54	0.60	0.982153
9172	dm3.chr3R	4,662,765 – 4,662,871		12576	4,662,765 – 4,662,871	-	3	106	72.33	-1.96	0.62	0.907001
9175	dm3.chr3R	4,688,649 – 4,688,791	FBnoncoding="tRNA;ID=FBtr0091521;Name=tRNA:R:85Cb-RA;Parent=FBgn0053551;Alias=CR31444-RA;Dbxref=FlyBase_Annotation_IDs:CR33551-RA;score_text=Weakly" tRNAscann="Arg_chr3R_trna8" - - "Rfam_10.0=RF00005;tRNA;AAJJ01004069.1/7732-7804\|4.2e-32" - - -	12580	4,688,649 – 4,688,791	+	4	159	77.39	-1.80	0.86	0.968554
9175	dm3.chr3R	4,688,649 – 4,688,791		12581	4,688,649 – 4,688,791	-	4	159	77.39	-2.55	0.82	0.994138
9176	dm3.chr3R	4,700,449 – 4,700,546	- - - - - - - -	12582	4,700,449 – 4,700,546	+	5	98	90.95	-2.08	0.85	0.907492
9177	dm3.chr3R	4,707,906 – 4,707,972	- - - intron="intron;ID=intron_FBgn0262614:29_FBgn0262614:28;Name=pyd-in;Parent=FBtr0305301;parent_type=mRNA" - - - -	12584	4,707,906 – 4,707,972	+	9	68	67.91	-1.47	0.43	0.915065
9180	dm3.chr3R	4,757,846 – 4,757,958	- - - - - - - -	12587	4,757,846 – 4,757,958	-	6	112	66.15	-2.91	0.21	0.927481
9181	dm3.chr3R	4,761,970 – 4,762,076	- - CDS="CDS;ID=CDS_CG10901:2_90;Name=osk-cds;Parent=FBtr0081956;parent_type=mRNA" - - - - -	12588	4,761,970 – 4,762,075	+	12	120	64.62	-2.42	0.26	0.948891
9182	dm3.chr3R	4,762,218 – 4,762,321	- - CDS="CDS;ID=CDS_CG10901:3_90;Name=osk-cds;Parent=FBtr0081956;parent_type=mRNA" - - - - -	12591	4,762,218 – 4,762,321	-	5	119	52.49	-2.38	0.46	0.999588
9183	dm3.chr3R	4,763,455 – 4,763,554	- - - - - - - -	12592	4,763,455 – 4,763,554	+	9	113	63.57	-3.28	0.29	0.998152
9185	dm3.chr3R	4,772,390 – 4,772,483	- - - - - - - -	12594	4,772,390 – 4,772,483	-	7	95	63.73	-1.20	0.49	0.939608
9187	dm3.chr3R	4,781,143 – 4,781,266	- - - intron="intron;ID=intron_FBgn0037645:2_FBgn0037645:1;Name=CG11966-in;Parent=FBtr0082014;parent_type=mRNA" - - - -	12596	4,781,143 – 4,781,238	+	8	113	77.76	-2.31	0.57	0.948389
9187	dm3.chr3R	4,781,143 – 4,781,266		12597	4,781,143 – 4,781,238	-	8	113	77.76	-2.65	0.60	0.988109
9188	dm3.chr3R	4,799,966 – 4,800,121	- - - - - - - -	12599	4,799,966 – 4,800,121	-	5	168	76.79	-2.66	0.59	0.984656
9189	dm3.chr3R	4,805,185 – 4,805,297	- - - - - - - -	12600	4,805,185 – 4,805,297	+	8	117	73.68	-2.42	0.46	0.972747
9190	dm3.chr3R	4,806,429 – 4,806,525	- - - - - - - -	12601	4,806,429 – 4,806,525	-	8	100	61.19	-1.29	0.39	0.905543
9193	dm3.chr3R	4,829,233 – 4,829,327	- - - - - - - -	12604	4,829,233 – 4,829,327	+	11	108	68.49	-0.83	0.65	0.942370
9204	dm3.chr3R	4,896,676 – 4,896,729	- - CDS="CDS;ID=CDS_FBgn0003165:3_185;Name=pum-cds;Parent=FBtr0081990,FBtr0081991,FBtr0081992,FBtr0081994;parent_type=mRNA" - - - - -	12615	4,896,676 – 4,896,729	-	10	58	74.61	-1.65	0.64	0.968038
9219	dm3.chr3R	4,974,587 – 4,974,646	- - - intron="intron;ID=intron_FBgn0003165:10_FBgn0003165:9;Name=pum-in;Parent=FBtr0305197;parent_type=mRNA" - - - -	12633	4,974,587 – 4,974,646	-	7	62	71.14	-1.96	0.45	0.953140
9220	dm3.chr3R	4,982,899 – 4,983,006	- - CDS="CDS;ID=CDS_FBgn0003165:10_253;Name=pum-cds;Parent=FBtr0305197;parent_type=mRNA" - - - - -	12634	4,982,899 – 4,983,000	-	13	111	79.49	-1.50	0.68	0.914190
9220	dm3.chr3R	4,982,899 – 4,983,006		12635	4,982,905 – 4,983,006	-	13	114	76.00	-1.80	0.62	0.973585
9227	dm3.chr3R	5,014,246 – 5,014,390	- - - - - - - -	12645	5,014,246 – 5,014,390	+	8	163	60.50	-2.10	0.28	0.954479
9228	dm3.chr3R	5,022,562 – 5,022,704	- - - - - - - -	12648	5,022,593 – 5,022,704	+	7	118	67.35	-2.71	0.32	0.986440
9228	dm3.chr3R	5,022,562 – 5,022,704	- - - - - - - -	12649	5,022,593 – 5,022,704	-	7	118	67.35	-2.51	0.31	0.966159
9231	dm3.chr3R	5,057,623 – 5,057,714	- - - - - - - -	12652	5,057,623 – 5,057,714	+	4	116	73.87	-2.35	0.53	0.942181
9232	dm3.chr3R	5,061,392 – 5,061,443	- - - intron="intron;ID=intron_FBgn0003165:19_FBgn0003165:18;Name=pum-in;Parent=FBtr0081992;parent_type=mRNA" - - - -	12654	5,061,392 – 5,061,443	+	4	57	54.82	-2.58	0.24	0.915003
9234	dm3.chr3R	5,082,896 – 5,082,991	- - - intron="intron;ID=intron_FBgn0037668:2_FBgn0037668:1;Name=CG16736-in;Parent=FBtr0081985;parent_type=mRNA" - - - -	12656	5,082,896 – 5,082,991	+	3	95	95.79	-3.94	1.01	0.998857
9234	dm3.chr3R	5,082,896 – 5,082,991		12657	5,082,896 – 5,082,991	-	3	95	95.79	-1.66	1.01	0.956620
9241	dm3.chr3R	5,149,045 – 5,149,165	- - - intron="intron;ID=intron_FBgn0037676:4_FBgn0037676:2;Name=CG8861-in;Parent=FBtr0301210;parent_type=mRNA" - - - -	12666	5,149,045 – 5,149,136	+	5	92	71.56	-1.74	0.54	0.931551
9241	dm3.chr3R	5,149,045 – 5,149,165		12667	5,149,045 – 5,149,136	-	5	92	71.56	-2.43	0.47	0.981601
9244	dm3.chr3R	5,167,646 – 5,167,737	- - - - - - - -	12672	5,167,646 – 5,167,737	-	5	91	96.92	-2.36	0.92	0.959008
9254	dm3.chr3R	5,252,314 – 5,252,437	- - - intron="intron;ID=intron_FBgn0026188:4_FBgn0026188:6;Name=ps-in;Parent=FBtr0111027,FBtr0302695;parent_type=mRNA" - - - -	12684	5,252,342 – 5,252,437	+	5	102	77.51	-2.76	0.46	0.939984
9256	dm3.chr3R	5,256,421 – 5,256,514	- - - intron="intron;ID=intron_FBgn0026188:5_FBgn0026188:6;Name=ps-in;Parent=FBtr0302694;parent_type=mRNA" - - - -	12687	5,256,421 – 5,256,514	+	6	117	73.26	-3.48	0.54	0.998951
9259	dm3.chr3R	5,279,815 – 5,279,867	- - - - - - - -	12690	5,279,815 – 5,279,867	+	11	52	100.00	-1.93	1.00	0.959989
9260	dm3.chr3R	5,283,422 – 5,283,513	- - - - - - - -	12692	5,283,422 – 5,283,513	+	7	96	87.59	-2.02	0.82	0.922655
9261	dm3.chr3R	5,284,442 – 5,284,496	- - CDS="CDS;ID=CDS_CG9363:2_90;Name=CG9363-cds;Parent=FBtr0082043;parent_type=mRNA" - - - - -	12694	5,284,442 – 5,284,496	-	15	54	90.09	-2.75	0.68	0.963345
9262	dm3.chr3R	5,299,550 – 5,299,657	- - - intron="intron;ID=intron_CG16779:2_CG16779:3;Name=CG16779-in;Parent=FBtr0082125;parent_type=mRNA" - - - -	12695	5,299,550 – 5,299,657	+	8	113	69.84	-1.19	0.68	0.971020
9264	dm3.chr3R	5,316,823 – 5,316,924	- - - - - - - -	12698	5,316,823 – 5,316,924	+	7	103	80.46	-2.36	0.72	0.989636
9265	dm3.chr3R	5,320,318 – 5,320,414	- - - - - - - -	12699	5,320,318 – 5,320,414	-	6	96	70.37	-1.85	0.59	0.986944
9267	dm3.chr3R	5,353,000 – 5,353,060	- - - - - - - -	12701	5,353,000 – 5,353,060	+	6	60	70.36	-1.40	0.56	0.940393
9268	dm3.chr3R	5,354,747 – 5,354,837	- - - intron="intron;ID=intron_FBgn0000244:5_FBgn0000244:1;Name=by-in;Parent=FBtr0082119;parent_type=mRNA" - - - -	12702	5,354,747 – 5,354,837	-	7	97	74.34	-2.28	0.63	0.987852
9269	dm3.chr3R	5,367,509 – 5,367,603	- - CDS="CDS;ID=CDS_FBgn0037705:7_172;Name=mura-cds;Parent=FBtr0082116,FBtr0082117;parent_type=mRNA" - - - - -	12703	5,367,509 – 5,367,603	-	6	97	84.00	-1.96	0.82	0.956084
9271	dm3.chr3R	5,426,803 – 5,426,898	- - - intron="intron;ID=intron_CG8312:1_CG8312:2;Name=CG8312-in;Parent=FBtr0082075;parent_type=mRNA" - - - -	12706	5,426,806 – 5,426,898	-	6	101	68.28	-2.41	0.36	0.954656
9272	dm3.chr3R	5,462,767 – 5,462,874	- - CDS="CDS;ID=CDS_FBgn0003334:5_271;Name=Scm-cds;Parent=FBtr0306008;parent_type=mRNA" - - - - -	12708	5,462,767 – 5,462,874	-	6	107	60.90	-1.69	0.42	0.983872
9273	dm3.chr3R	5,476,924 – 5,476,976	- - - - - - - -	12709	5,476,924 – 5,476,976	+	4	55	95.95	-2.02	0.93	0.927629
9275	dm3.chr3R	5,484,863 – 5,484,999	- - CDS="CDS;ID=CDS_FBgn0037726:14_102;Name=CG9492-cds;Parent=FBtr0082100;parent_type=mRNA" - - - - -	12714	5,484,879 – 5,484,999	-	15	120	86.19	-2.00	0.72	0.919690
9281	dm3.chr3R	5,539,324 – 5,539,523	- - - intron="intron;ID=intron_CG8374:2_CG8374:3;Name=dmt-in;Parent=FBtr0082086;parent_type=mRNA" - - - -	12724	5,539,414 – 5,539,523	-	10	111	67.84	-0.95	0.66	0.977456
9283	dm3.chr3R	5,604,300 – 5,604,392	- - - - - - - -	12726	5,604,300 – 5,604,392	+	15	108	64.40	-1.64	0.36	0.950605
9293	dm3.chr3R	5,695,903 – 5,696,001	- - - - - - - -	12740	5,695,903 – 5,696,001	-	7	112	78.33	-2.17	0.78	0.990170
9294	dm3.chr3R	5,699,838 – 5,699,913	- - - - - - - -	12742	5,699,838 – 5,699,913	-	7	83	78.62	-2.53	0.76	0.995160
9297	dm3.chr3R	5,707,627 – 5,707,725	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12745	5,707,627 – 5,707,725	+	11	107	75.12	-1.69	0.70	0.985246
9297	dm3.chr3R	5,707,627 – 5,707,725		12746	5,707,627 – 5,707,725	-	11	107	75.12	-2.20	0.57	0.990740
9300	dm3.chr3R	5,731,765 – 5,731,881	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12749	5,731,765 – 5,731,881	+	11	116	82.07	-2.29	0.57	0.906519
9300	dm3.chr3R	5,731,765 – 5,731,881		12750	5,731,765 – 5,731,881	-	11	116	82.07	-2.36	0.64	0.966094
9301	dm3.chr3R	5,733,386 – 5,733,524	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12751	5,733,386 – 5,733,524	+	4	139	75.69	-2.88	0.64	0.995983
9303	dm3.chr3R	5,737,112 – 5,737,207	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12753	5,737,112 – 5,737,207	-	6	102	78.00	-2.91	0.37	0.905989
9307	dm3.chr3R	5,783,828 – 5,783,892	- - - - - - - -	12759	5,783,828 – 5,783,892	-	4	65	68.89	-1.41	0.62	0.931118
9309	dm3.chr3R	5,791,055 – 5,791,194	- - - - - - - -	12762	5,791,055 – 5,791,167	+	6	112	77.30	-1.53	0.71	0.936143
				12763	5,791,087 – 5,791,186	+	9	116	75.97	-2.36	0.72	0.995892
				12765	5,791,104 – 5,791,194	+	12	108	75.22	-1.95	0.67	0.992920
				12766	5,791,104 – 5,791,194	-	12	108	75.22	-1.74	0.59	0.970837
9311	dm3.chr3R	5,806,456 – 5,806,561	- - - - - - - -	12768	5,806,456 – 5,806,561	-	11	117	69.02	-2.20	0.39	0.984455
9316	dm3.chr3R	5,848,548 – 5,848,609	- - - - - - - -	12776	5,848,548 – 5,848,609	-	7	72	57.41	-1.74	0.65	0.999536
9323	dm3.chr3R	5,916,815 – 5,916,947	FBnoncoding="pre_miRNA;ID=FBtr0304217;Name=mir-317-RM;Parent=FBgn0262378;Alias=CR42900-RM;Dbxref=FlyBase_Annotation_IDs:CR42900-RM,miRBase:MI0000429" - - - "Rfam_10.0=RF00720;mir-317;AAEU02000013.1/76417-76507\|1.1e-44" - - "mirBase_v16=dsi-mir-317\|1.4e-47"	12784	5,916,842 – 5,916,947	+	12	115	79.65	-2.59	0.85	0.997577
9323	dm3.chr3R	5,916,815 – 5,916,947		12785	5,916,842 – 5,916,947	-	12	115	79.65	-1.98	0.71	0.981622
9325	dm3.chr3R	5,925,737 – 5,925,846	FBnoncoding="pre_miRNA;ID=FBtr0304361;Name=mir-277-RM;Parent=FBgn0262419;Alias=CR42968-RM;Dbxref=FlyBase_Annotation_IDs:CR42968-RM,miRBase:MI0000360" - - - "Rfam_10.0=RF00730;mir-277;AANI01014607.1/369282-369382\|8.1e-36" "Noncode_2.0=n178682_u177780_NW_045730_miRNA_Anopheles\|9.4e-11" "unique_Noncode_2.0=u177780_miRNA_Anopheles\|8.2e-11" "mirBase_v16=dme-mir-277\|1.9e-52"	12787	5,925,737 – 5,925,846	+	14	121	86.11	-4.16	0.90	0.999243
9326	dm3.chr3R	5,936,821 – 5,936,921	- - - - - - - -	12788	5,936,821 – 5,936,921	+	9	106	64.32	-2.26	0.45	0.998456
9327	dm3.chr3R	5,937,433 – 5,937,524	- - - - - - - -	12790	5,937,433 – 5,937,524	+	6	118	56.16	-1.09	0.48	0.949343
9332	dm3.chr3R	5,980,620 – 5,980,717	- - - intron="intron;ID=intron_FBgn0002478:2_FBgn0002478:3;Name=Invadolysin-in;Parent=FBtr0082181;parent_type=mRNA" - - - -	12795	5,980,620 – 5,980,717	+	7	109	60.75	-2.03	0.36	0.983734
9333	dm3.chr3R	5,984,455 – 5,984,535	- - - - - - - -	12797	5,984,455 – 5,984,535	-	6	82	70.50	-2.96	0.44	0.997602
9334	dm3.chr3R	5,993,972 – 5,994,038	- - - intron="intron;ID=intron_FBgn0040238:10_FBgn0040238:9;Name=Best1-in;Parent=FBtr0082183,FBtr0114590,FBtr0306023;parent_type=mRNA" - - - -	12798	5,993,972 – 5,994,038	-	4	66	86.84	-2.45	0.75	0.934543
9335	dm3.chr3R	6,003,003 – 6,003,067	- - - intron="intron;ID=intron_FBgn0037796:10_FBgn0037796:9;Name=CG12814-in;Parent=FBtr0110786;parent_type=mRNA" - - - -	12799	6,003,003 – 6,003,067	+	5	76	73.90	-1.55	0.79	0.961734
9336	dm3.chr3R	6,017,716 – 6,017,808	- - - intron="intron;ID=intron_FBgn0004575:1_FBgn0004575:2;Name=Syn-in;Parent=FBtr0100472,FBtr0089477,FBtr0089475,FBtr0100471;parent_type=mRNA" - - - -	12800	6,017,716 – 6,017,808	+	8	107	69.65	-1.76	0.46	0.939265
9336	dm3.chr3R	6,017,716 – 6,017,808		12801	6,017,716 – 6,017,808	-	8	107	69.65	-1.62	0.63	0.989315
9339	dm3.chr3R	6,032,909 – 6,033,036	- - - intron="intron;ID=intron_FBgn0025879:5_FBgn0025879:4;Name=Timp-in;Parent=FBtr0082245;parent_type=mRNA" - - - -	12805	6,032,931 – 6,033,036	-	5	105	78.06	-1.73	0.73	0.904684
9340	dm3.chr3R	6,049,801 – 6,049,913	- - - - - - - -	12806	6,049,801 – 6,049,913	+	3	120	74.72	-2.49	0.68	0.982395
9344	dm3.chr3R	6,087,932 – 6,088,027	- - - - - - - -	12810	6,087,932 – 6,088,027	+	6	103	72.26	-2.14	0.71	0.996775
9345	dm3.chr3R	6,091,058 – 6,091,149	- - - intron="intron;ID=intron_FBgn0262617:1_FBgn0262617:4;Name=CG43143-in;Parent=FBtr0305351,FBtr0305354,FBtr0305356;parent_type=mRNA" - - - -	12811	6,091,058 – 6,091,149	+	6	98	76.81	-2.12	0.64	0.976268
9347	dm3.chr3R	6,100,078 – 6,100,176	- - - intron="intron;ID=intron_FBgn0262617:1_FBgn0262617:4;Name=CG43143-in;Parent=FBtr0305351,FBtr0305354,FBtr0305356;parent_type=mRNA" - - - -	12813	6,100,078 – 6,100,176	-	10	108	66.46	-1.53	0.40	0.914525
9352	dm3.chr3R	6,174,930 – 6,174,982	- - CDS="CDS;ID=CDS_CG31406:5_87;Name=CG31406-cds;Parent=FBtr0082236;parent_type=mRNA" - - - - -	12818	6,174,930 – 6,174,982	-	3	55	88.27	-1.27	0.99	0.903359
9354	dm3.chr3R	6,202,633 – 6,202,745	- - - intron="intron;ID=intron_FBgn0020379:14_FBgn0020379:13;Name=Rfx-in;Parent=FBtr0082238,FBtr0112895,FBtr0305995,FBtr0305996,FBtr0305997;parent_type=mRNA" - - - -	12820	6,202,633 – 6,202,745	-	3	112	93.43	-1.94	0.96	0.956302
9356	dm3.chr3R	6,219,169 – 6,219,259	- - - intron="intron;ID=intron_FBgn0259938:1_FBgn0259938:2;Name=cwo-in;Parent=FBtr0305152;parent_type=mRNA" - - - -	12822	6,219,169 – 6,219,259	+	6	96	72.71	-1.78	0.54	0.941099
9356	dm3.chr3R	6,219,169 – 6,219,259		12823	6,219,169 – 6,219,259	-	6	96	72.71	-2.01	0.55	0.976984
9357	dm3.chr3R	6,219,987 – 6,220,090	- - - intron="intron;ID=intron_FBgn0259938:1_FBgn0259938:2;Name=cwo-in;Parent=FBtr0305152;parent_type=mRNA" - - - -	12824	6,219,987 – 6,220,090	-	5	106	88.22	-3.27	0.77	0.994210
9359	dm3.chr3R	6,233,836 – 6,233,967	FBnoncoding="pre_miRNA;ID=FBtr0304283;Name=mir-994-RM;Parent=FBgn0262223;Alias=CR42930-RM;Dbxref=FlyBase_Annotation_IDs:CR42930-RM,miRBase:MI0005855" - - - "Rfam_10.0=RF00143;mir-6;AANI01017110.1/28671-28745\|8.7e-24" - - "mirBase_v16=dme-mir-994\|5.4e-47"	12827	6,233,836 – 6,233,932	+	12	114	76.96	-2.03	0.86	0.995284
9359	dm3.chr3R	6,233,836 – 6,233,967		12828	6,233,858 – 6,233,967	+	12	115	87.01	-5.38	0.98	0.998057
9360	dm3.chr3R	6,234,009 – 6,234,117	FBnoncoding="pre_miRNA;ID=FBtr0304367;Name=mir-318-RM;Parent=FBgn0262420;Alias=CR42971-RM;Dbxref=FlyBase_Annotation_IDs:CR42971-RM,miRBase:MI0000430" - - - "Rfam_10.0=RF00818;mir-318;AAGH01004927.1/3173-3240\|2.9e-29" - - "mirBase_v16=dse-mir-318\|2.3e-33"	12829	6,234,009 – 6,234,102	+	11	98	86.85	-4.25	0.90	0.999217
9360	dm3.chr3R	6,234,009 – 6,234,117		12830	6,234,024 – 6,234,117	+	11	98	84.06	-3.67	0.83	0.999104
9362	dm3.chr3R	6,242,431 – 6,242,522	- - - - - - - -	12832	6,242,431 – 6,242,522	-	5	91	87.14	-2.59	0.78	0.976705
9364	dm3.chr3R	6,259,656 – 6,259,749	- - - - - - - -	12834	6,259,656 – 6,259,749	+	11	118	89.42	-3.05	0.78	0.990254
9365	dm3.chr3R	6,266,358 – 6,266,449	- - - - - - - -	12835	6,266,358 – 6,266,449	+	10	120	87.10	-3.09	0.84	0.995758
9366	dm3.chr3R	6,269,330 – 6,269,423	- - - - - - - -	12836	6,269,330 – 6,269,423	-	10	110	76.89	-2.62	0.51	0.988119
9368	dm3.chr3R	6,273,471 – 6,273,669	- - - - - - - -	12838	6,273,471 – 6,273,573	-	12	115	87.37	-2.06	0.78	0.932020
9369	dm3.chr3R	6,275,519 – 6,275,613	- - - - - - - -	12841	6,275,519 – 6,275,613	+	6	94	69.83	-2.31	0.41	0.965562
9372	dm3.chr3R	6,287,008 – 6,287,079	- - - - - - - -	12844	6,287,008 – 6,287,079	+	6	80	58.63	-0.51	0.59	0.948871
9379	dm3.chr3R	6,312,147 – 6,312,372	- - - - - - - -	12854	6,312,207 – 6,312,321	-	7	117	74.20	-1.30	0.67	0.939632
9379	dm3.chr3R	6,312,147 – 6,312,372	- - - - - - - -	12856	6,312,241 – 6,312,350	-	12	120	83.87	-1.75	0.85	0.947665
9380	dm3.chr3R	6,322,847 – 6,323,001	- - - - - - - -	12859	6,322,847 – 6,322,964	+	11	119	98.94	-2.71	1.00	0.993793
9384	dm3.chr3R	6,333,825 – 6,333,930	- - - - - - - -	12866	6,333,825 – 6,333,930	+	5	109	91.11	-2.28	0.92	0.977600
9384	dm3.chr3R	6,333,825 – 6,333,930	- - - - - - - -	12867	6,333,825 – 6,333,930	-	5	109	91.11	-2.08	0.95	0.975951
9385	dm3.chr3R	6,337,356 – 6,337,473	- - - intron="intron;ID=intron_FBgn0001235:2_FBgn0001235:1;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301345,FBtr0301956;parent_type=mRNA" - - - -	12868	6,337,356 – 6,337,473	-	5	127	61.48	-2.08	0.39	0.977592
9389	dm3.chr3R	6,354,456 – 6,354,547	- - - intron="intron;ID=intron_FBgn0001235:5_FBgn0001235:4;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301345,FBtr0301956;parent_type=mRNA" - - - -	12872	6,354,456 – 6,354,547	+	8	112	76.81	-3.10	0.52	0.995776
9394	dm3.chr3R	6,363,695 – 6,363,810	- - - intron="intron;ID=intron_FBgn0001235:7_FBgn0001235:6;Name=hth-in;Parent=FBtr0082255;parent_type=mRNA" - - - -	12880	6,363,695 – 6,363,810	-	11	120	96.47	-2.31	0.92	0.961465
9397	dm3.chr3R	6,381,190 – 6,381,308	- - - intron="intron;ID=intron_FBgn0001235:9_FBgn0001235:8;Name=hth-in;Parent=FBtr0082256,FBtr0301956;parent_type=mRNA" - - - -	12884	6,381,190 – 6,381,308	+	10	119	80.13	-2.18	0.70	0.984078
9397	dm3.chr3R	6,381,190 – 6,381,308		12885	6,381,190 – 6,381,308	-	10	119	80.13	-2.35	0.65	0.985452
9399	dm3.chr3R	6,386,139 – 6,386,233	- - - intron="intron;ID=intron_FBgn0001235:9_FBgn0001235:8;Name=hth-in;Parent=FBtr0082256,FBtr0301956;parent_type=mRNA" - - - -	12887	6,386,139 – 6,386,233	+	12	120	72.77	-1.71	0.58	0.951059
9400	dm3.chr3R	6,388,021 – 6,388,135	- - - intron="intron;ID=intron_FBgn0001235:13_FBgn0001235:9;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301956;parent_type=mRNA" - - - -	12889	6,388,021 – 6,388,135	-	11	120	77.93	-1.34	0.69	0.903547
9401	dm3.chr3R	6,390,119 – 6,390,215	- - - intron="intron;ID=intron_FBgn0001235:13_FBgn0001235:9;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301956;parent_type=mRNA" - - - -	12890	6,390,119 – 6,390,215	-	4	97	75.65	-2.53	0.54	0.967257
9402	dm3.chr3R	6,398,567 – 6,398,670	- - - intron="intron;ID=intron_FBgn0001235:13_FBgn0001235:9;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301956;parent_type=mRNA" - - - -	12891	6,398,567 – 6,398,670	+	5	117	86.03	-2.94	0.75	0.988796
9403	dm3.chr3R	6,405,690 – 6,405,780	- - - intron="intron;ID=intron_FBgn0001235:13_FBgn0001235:9;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301956;parent_type=mRNA" - - - -	12892	6,405,690 – 6,405,780	+	6	93	82.65	-1.59	0.88	0.929537
9405	dm3.chr3R	6,443,812 – 6,443,964	- - - intron="intron;ID=intron_FBgn0001235:21_FBgn0001235:19;Name=hth-in;Parent=FBtr0100454;parent_type=mRNA" - - - -	12894	6,443,812 – 6,443,924	-	7	118	83.08	-2.53	0.59	0.921539
9405	dm3.chr3R	6,443,812 – 6,443,964		12895	6,443,851 – 6,443,964	-	8	119	76.51	-1.99	0.56	0.943940
9408	dm3.chr3R	6,489,657 – 6,489,854	- - - - - - - -	12899	6,489,746 – 6,489,854	+	5	114	71.80	-1.86	0.66	0.987629
9410	dm3.chr3R	6,511,336 – 6,511,475	- - - - - - - -	12903	6,511,373 – 6,511,475	-	5	116	82.10	-2.69	0.78	0.990861
9411	dm3.chr3R	6,518,553 – 6,518,616	- - CDS="CDS;ID=CDS_FBgn0262717:6_258;Name=Skeletor-cds;Parent=FBtr0305664;parent_type=mRNA" - - - - -	12905	6,518,553 – 6,518,616	-	10	66	71.68	-1.37	0.61	0.966660
9413	dm3.chr3R	6,541,701 – 6,541,807	- - - - - - - -	12907	6,541,701 – 6,541,807	-	6	108	71.88	-1.80	0.49	0.942221
9414	dm3.chr3R	6,543,550 – 6,543,606	- - - - - - - -	12908	6,543,550 – 6,543,606	+	6	56	68.59	-2.36	0.57	0.998560
9416	dm3.chr3R	6,550,871 – 6,551,062	- - - - - - - -	12911	6,550,896 – 6,550,999	+	8	110	67.68	-2.17	0.33	0.939541
9419	dm3.chr3R	6,560,882 – 6,561,006	- - - - - - - -	12915	6,560,882 – 6,561,006	-	6	132	79.26	-1.85	0.66	0.910917
9420	dm3.chr3R	6,561,827 – 6,561,908	- - - - - - - -	12916	6,561,827 – 6,561,908	+	4	89	77.67	-2.36	0.59	0.952933
9425	dm3.chr3R	6,571,529 – 6,571,636	- - - intron="intron;ID=intron_FBgn0004841:9_FBgn0004841:8;Name=Takr86C-in;Parent=FBtr0082315;parent_type=mRNA" - - - -	12924	6,571,529 – 6,571,636	+	7	109	67.86	-1.47	0.53	0.982862
9427	dm3.chr3R	6,583,002 – 6,583,145	- - - intron="intron;ID=intron_FBgn0051272:5_FBgn0051272:4;Name=CG31272-in;Parent=FBtr0082312;parent_type=mRNA" - - - -	12927	6,583,002 – 6,583,111	-	3	109	84.66	-2.68	0.82	0.983047
9433	dm3.chr3R	6,657,365 – 6,657,509	- - - intron="intron;ID=intron_FBgn0261053:2_FBgn0261053:3;Name=Cad86C-in;Parent=FBtr0301933,FBtr0304666;parent_type=mRNA" - - - -	12936	6,657,365 – 6,657,474	-	5	111	71.79	-2.43	0.63	0.996925
9434	dm3.chr3R	6,666,829 – 6,666,941	- - - intron="intron;ID=intron_FBgn0261053:7_FBgn0261053:8;Name=Cad86C-in;Parent=FBtr0301933,FBtr0304663,FBtr0304664,FBtr0304665,FBtr0304666;parent_type=mRNA" - - - -	12938	6,666,829 – 6,666,941	+	6	112	74.90	-1.43	0.64	0.911620
9437	dm3.chr3R	6,678,100 – 6,678,205	- - - - - - - -	12942	6,678,100 – 6,678,205	+	7	118	68.68	-2.00	0.55	0.994385
9437	dm3.chr3R	6,678,100 – 6,678,205	- - - - - - - -	12943	6,678,100 – 6,678,205	-	7	118	68.68	-2.04	0.53	0.993677
9440	dm3.chr3R	6,728,374 – 6,728,477	- - - - - - - -	12947	6,728,374 – 6,728,477	-	6	103	80.98	-2.46	0.57	0.915292
9444	dm3.chr3R	6,746,313 – 6,746,374	- - - - - - - -	12951	6,746,313 – 6,746,374	+	3	61	72.68	-1.50	0.78	0.909456
9445	dm3.chr3R	6,746,716 – 6,746,809	- - - - - - - -	12952	6,746,716 – 6,746,809	+	9	108	89.10	-1.90	0.85	0.905081
9450	dm3.chr3R	6,762,542 – 6,762,621	- - - - - - - -	12960	6,762,542 – 6,762,621	-	4	80	74.63	-2.21	0.63	0.976076
9453	dm3.chr3R	6,784,068 – 6,784,142	- - - - - - - -	12964	6,784,068 – 6,784,142	+	5	77	61.80	-1.02	0.52	0.915893
9455	dm3.chr3R	6,796,928 – 6,797,045	- - - - - - - -	12966	6,796,928 – 6,797,045	-	7	117	71.58	-2.94	0.53	0.999032
9456	dm3.chr3R	6,806,371 – 6,806,494	- - - - - - - -	12968	6,806,393 – 6,806,494	-	12	116	67.34	-1.84	0.43	0.980440
9461	dm3.chr3R	6,835,962 – 6,836,123	- - - intron="intron;ID=intron_FBgn0083950:1_FBgn0083950:2;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12974	6,835,987 – 6,836,102	-	11	121	88.63	-1.63	0.90	0.908236
9461	dm3.chr3R	6,835,962 – 6,836,123		12975	6,836,025 – 6,836,123	-	12	117	82.47	-1.55	0.94	0.965333
9462	dm3.chr3R	6,838,092 – 6,838,148	- - - intron="intron;ID=intron_FBgn0083950:3_FBgn0083950:4;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12977	6,838,092 – 6,838,148	-	3	56	97.60	-1.98	1.00	0.972235
9463	dm3.chr3R	6,842,228 – 6,842,367	- - - intron="intron;ID=intron_FBgn0083950:5_FBgn0083950:6;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12978	6,842,228 – 6,842,367	+	6	149	84.02	-3.29	0.66	0.995689
9465	dm3.chr3R	6,844,860 – 6,844,932	- - - intron="intron;ID=intron_FBgn0083950:5_FBgn0083950:6;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12981	6,844,860 – 6,844,932	+	5	72	88.69	-2.75	0.82	0.983795
9466	dm3.chr3R	6,846,160 – 6,846,334	- - - intron="intron;ID=intron_FBgn0083950:6_FBgn0083950:7;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12982	6,846,160 – 6,846,255	+	5	95	92.60	-1.69	0.97	0.944196
9475	dm3.chr3R	6,888,014 – 6,888,104	- - - - - - - -	12992	6,888,014 – 6,888,104	+	8	99	80.05	-1.95	0.72	0.956908
9477	dm3.chr3R	6,900,351 – 6,900,496	- - - - - - - -	12994	6,900,351 – 6,900,454	+	11	115	76.63	-1.89	0.67	0.983907
				12996	6,900,381 – 6,900,480	+	12	114	80.87	-1.76	0.73	0.929656
				12998	6,900,398 – 6,900,496	+	12	113	80.15	-1.48	0.82	0.935489
9478	dm3.chr3R	6,905,671 – 6,905,769	- - - - - - - -	13000	6,905,671 – 6,905,769	-	8	114	65.80	-1.79	0.42	0.944317
9480	dm3.chr3R	6,915,033 – 6,915,149	- - - - - - - -	13003	6,915,033 – 6,915,149	+	5	120	74.47	-3.14	0.65	0.998999
9480	dm3.chr3R	6,915,033 – 6,915,149	- - - - - - - -	13004	6,915,033 – 6,915,149	-	5	120	74.47	-3.13	0.54	0.997679
9485	dm3.chr3R	6,957,931 – 6,958,026	- - - - - - - -	13010	6,957,931 – 6,958,026	+	7	102	73.47	-1.97	0.48	0.948873
9489	dm3.chr3R	7,020,588 – 7,020,702	- - - - - - - -	13014	7,020,588 – 7,020,702	+	4	120	79.55	-2.62	0.58	0.958620
9495	dm3.chr3R	7,042,289 – 7,042,398	- - - - - - - -	13020	7,042,289 – 7,042,398	+	12	114	63.23	-1.44	0.38	0.969981
9497	dm3.chr3R	7,048,752 – 7,048,856	- - CDS="CDS;ID=CDS_FBgn0020910:5_198;Name=RpL3-cds;Parent=FBtr0302586;parent_type=mRNA" - - - - -	13023	7,048,752 – 7,048,856	+	13	114	64.89	-1.14	0.67	0.996392
9498	dm3.chr3R	7,054,525 – 7,054,634	- - CDS="CDS;ID=CDS_FBgn0037881:2_171;Name=CG10703-cds;Parent=FBtr0082366;parent_type=mRNA" - - - - -	13024	7,054,525 – 7,054,634	+	12	115	79.51	-2.18	0.54	0.936674
9500	dm3.chr3R	7,066,570 – 7,066,693	- - CDS="CDS;ID=CDS_FBgn0037888:2_243;Name=scpr-B-cds;Parent=FBtr0082362;parent_type=mRNA" - - - - -	13027	7,066,598 – 7,066,693	+	12	107	66.83	-0.94	0.51	0.935660
9501	dm3.chr3R	7,073,834 – 7,073,930	- - - - - - - -	13028	7,073,834 – 7,073,930	+	10	106	84.03	-4.15	0.58	0.998953
9501	dm3.chr3R	7,073,834 – 7,073,930	- - - - - - - -	13029	7,073,834 – 7,073,930	-	10	106	84.03	-5.09	0.63	0.999732
9502	dm3.chr3R	7,074,181 – 7,074,404	- - - - - - - -	13030	7,074,181 – 7,074,283	-	12	117	67.43	-1.08	0.55	0.965215
9502	dm3.chr3R	7,074,181 – 7,074,404	- - - - - - - -	13031	7,074,188 – 7,074,290	-	12	117	69.75	-1.18	0.52	0.936181
9505	dm3.chr3R	7,094,983 – 7,095,046	- - - - - - - -	13036	7,094,983 – 7,095,046	+	6	76	70.20	-2.59	0.72	0.998875
9506	dm3.chr3R	7,098,240 – 7,098,349	- - - intron="intron;ID=intron_CG31386:4_CG31386:5;Name=CG31386-in;Parent=FBtr0082359;parent_type=mRNA" - - - -	13038	7,098,240 – 7,098,343	+	5	118	69.38	-1.31	0.63	0.939628
9508	dm3.chr3R	7,108,054 – 7,108,160	- - - intron="intron;ID=intron_CG31386:3_CG31386:4;Name=CG31386-in;Parent=FBtr0082359;parent_type=mRNA" - - - -	13041	7,108,054 – 7,108,160	-	4	106	86.10	-2.86	0.76	0.985645
9510	dm3.chr3R	7,127,022 – 7,127,146	- - - intron="intron;ID=intron_CG31386:1_CG31386:2;Name=CG31386-in;Parent=FBtr0082359;parent_type=mRNA" - - - -	13043	7,127,022 – 7,127,124	-	7	118	72.93	-2.84	0.50	0.992809
9510	dm3.chr3R	7,127,022 – 7,127,146		13045	7,127,056 – 7,127,146	-	5	90	73.79	-1.97	0.69	0.980887
9511	dm3.chr3R	7,128,290 – 7,128,452	- - - intron="intron;ID=intron_CG31386:1_CG31386:2;Name=CG31386-in;Parent=FBtr0082359;parent_type=mRNA" - - - -	13048	7,128,322 – 7,128,419	-	6	104	72.15	-1.71	0.51	0.900954
9514	dm3.chr3R	7,140,669 – 7,140,764	- - - - - - - -	13052	7,140,669 – 7,140,764	+	9	115	74.17	-2.60	0.48	0.989782
9521	dm3.chr3R	7,174,067 – 7,174,158	- - - intron="intron;ID=intron_FBgn0004595:3_FBgn0004595:4;Name=pros-in;Parent=FBtr0304603,FBtr0304604,FBtr0304608;parent_type=mRNA" - - - -	13059	7,174,067 – 7,174,158	-	5	97	88.25	-2.62	0.82	0.981687
9522	dm3.chr3R	7,183,224 – 7,183,279	- - - - - - - -	13060	7,183,224 – 7,183,279	+	6	57	95.93	-3.37	1.02	0.998534
9526	dm3.chr3R	7,193,113 – 7,193,264	- - - - - - - -	13065	7,193,113 – 7,193,229	-	6	117	88.70	-3.01	0.80	0.992486
9527	dm3.chr3R	7,193,669 – 7,193,762	- - - - - - - -	13067	7,193,669 – 7,193,762	+	8	111	75.11	-2.52	0.46	0.971209
9529	dm3.chr3R	7,219,453 – 7,219,585	- - - - - - - -	13070	7,219,481 – 7,219,585	+	9	120	66.18	-3.70	0.52	0.999925
9530	dm3.chr3R	7,221,025 – 7,221,116	- - - - - - - -	13071	7,221,025 – 7,221,116	+	6	98	88.07	-2.90	0.83	0.992385
9532	dm3.chr3R	7,224,778 – 7,224,917	- - - - - - - -	13073	7,224,778 – 7,224,884	+	12	116	75.23	-2.25	0.49	0.981512
9532	dm3.chr3R	7,224,778 – 7,224,917	- - - - - - - -	13075	7,224,813 – 7,224,917	+	12	114	79.24	-2.14	0.63	0.975727
9533	dm3.chr3R	7,236,541 – 7,236,689	- - - intron="intron;ID=intron_FBgn0011774:1_FBgn0011774:2;Name=Irbp-in;Parent=FBtr0082385;parent_type=mRNA" - - - -	13076	7,236,541 – 7,236,650	+	10	113	61.52	-3.22	0.62	0.999975
				13077	7,236,541 – 7,236,650	-	10	113	61.52	-2.90	0.52	0.999944
				13078	7,236,574 – 7,236,689	+	12	120	74.49	-2.42	0.57	0.997479
				13079	7,236,574 – 7,236,689	-	12	120	74.49	-2.84	0.40	0.992595
9535	dm3.chr3R	7,266,558 – 7,266,608	- - - intron="intron;ID=intron_FBgn0051374:6_FBgn0051374:5;Name=sals-in;Parent=FBtr0082400,FBtr0082401,FBtr0082399,FBtr0300812,FBtr0306100,FBtr0306101;parent_type=mRNA" - - - -	13081	7,266,558 – 7,266,608	+	6	50	78.00	-2.29	0.60	0.982223
9536	dm3.chr3R	7,271,020 – 7,271,116	- - - intron="intron;ID=intron_FBgn0051374:8_FBgn0051374:7;Name=sals-in;Parent=FBtr0082400;parent_type=mRNA" - - - -	13082	7,271,020 – 7,271,116	+	6	100	92.26	-3.32	0.86	0.995504
9537	dm3.chr3R	7,272,615 – 7,272,676	- - - - - - - -	13084	7,272,615 – 7,272,676	-	4	61	94.26	-2.47	1.00	0.993507
9539	dm3.chr3R	7,275,702 – 7,275,815	- - - intron="intron;ID=intron_FBgn0051374:11_FBgn0051374:10;Name=sals-in;Parent=FBtr0300812;parent_type=mRNA" - - - -	13087	7,275,718 – 7,275,815	+	10	110	62.84	-1.42	0.42	0.954009
9539	dm3.chr3R	7,275,702 – 7,275,815		13088	7,275,718 – 7,275,815	-	10	110	62.84	-1.98	0.30	0.922268
9541	dm3.chr3R	7,282,724 – 7,282,818	- - - - - - - -	13090	7,282,724 – 7,282,818	+	4	94	79.04	-3.23	0.55	0.992038
9545	dm3.chr3R	7,323,771 – 7,323,869	- - - - - - - -	13097	7,323,771 – 7,323,869	+	8	106	72.15	-1.81	0.91	0.994182
9547	dm3.chr3R	7,329,815 – 7,329,910	- - - intron="intron;ID=intron_CG5308:3_CG5308:4;Name=dpr5-in;Parent=FBtr0082394,FBtr0082395;parent_type=mRNA" - - - -	13099	7,329,815 – 7,329,910	-	6	99	86.57	-2.38	0.82	0.977872
9553	dm3.chr3R	7,339,566 – 7,339,657	- - - - - - - -	13108	7,339,566 – 7,339,657	-	5	104	71.31	-2.27	0.48	0.963849
9555	dm3.chr3R	7,342,350 – 7,342,448	- - - - - - - -	13110	7,342,350 – 7,342,448	+	4	101	57.52	-2.24	0.32	0.939483
9556	dm3.chr3R	7,345,331 – 7,345,431	- - - - - - - -	13111	7,345,331 – 7,345,431	+	7	112	72.13	-1.96	0.66	0.993682
9559	dm3.chr3R	7,358,031 – 7,358,130	- - - - - - - -	13116	7,358,031 – 7,358,130	+	6	100	82.29	-2.08	0.80	0.974074
9562	dm3.chr3R	7,377,019 – 7,377,113	- - - - - - - -	13120	7,377,019 – 7,377,113	+	9	103	73.60	-1.85	0.62	0.987976
9562	dm3.chr3R	7,377,019 – 7,377,113	- - - - - - - -	13121	7,377,019 – 7,377,113	-	9	103	73.60	-2.06	0.58	0.990841
9563	dm3.chr3R	7,377,588 – 7,377,715	- - - - - - - -	13122	7,377,588 – 7,377,682	+	5	95	90.71	-2.67	0.73	0.919872
9563	dm3.chr3R	7,377,588 – 7,377,715	- - - - - - - -	13123	7,377,605 – 7,377,715	+	6	118	76.47	-2.40	0.46	0.920856
9565	dm3.chr3R	7,383,457 – 7,383,545	- - - - - - - -	13126	7,383,457 – 7,383,545	+	6	91	73.34	-2.27	0.55	0.989464
9568	dm3.chr3R	7,395,978 – 7,396,035	- - - intron="intron;ID=intron_FBgn0025701:1_FBgn0025701:2;Name=CG14709-in;Parent=FBtr0302027;parent_type=mRNA" - - - -	13130	7,395,978 – 7,396,035	+	4	62	63.31	-2.33	0.49	0.994804
9568	dm3.chr3R	7,395,978 – 7,396,035		13131	7,395,978 – 7,396,035	-	4	62	63.31	-1.94	0.48	0.977374
9569	dm3.chr3R	7,411,503 – 7,411,598	- - - intron="intron;ID=intron_CG6791:4_CG6791:5;Name=CG6791-in;Parent=FBtr0082459;parent_type=mRNA" - - - -	13132	7,411,503 – 7,411,598	+	5	102	63.69	-1.93	0.37	0.935101
9570	dm3.chr3R	7,416,136 – 7,416,276	- - - - - - - -	13133	7,416,136 – 7,416,239	-	6	116	92.11	-2.22	0.89	0.956484
9571	dm3.chr3R	7,420,658 – 7,420,754	- - - intron="intron;ID=intron_FBgn0051363:9_FBgn0051363:7;Name=Jupiter-in;Parent=FBtr0082454;parent_type=mRNA" - - - -	13135	7,420,658 – 7,420,754	+	4	119	84.19	-1.74	0.87	0.907705
9575	dm3.chr3R	7,431,898 – 7,431,998	- - - - - - - -	13141	7,431,898 – 7,431,998	+	4	100	96.33	-1.76	0.97	0.929709
9576	dm3.chr3R	7,435,642 – 7,435,732	- - - - - - - -	13142	7,435,642 – 7,435,732	+	4	114	73.23	-1.84	0.69	0.934730
9584	dm3.chr3R	7,475,685 – 7,475,789	- - - - - - - -	13151	7,475,685 – 7,475,789	+	8	109	72.98	-1.63	0.60	0.967290
9586	dm3.chr3R	7,483,549 – 7,483,639	- - - intron="intron;ID=intron_FBgn0259227:1_FBgn0259227:2;Name=CG42327-in;Parent=FBtr0299789;parent_type=mRNA" - - - -	13153	7,483,549 – 7,483,639	-	4	90	65.00	-2.44	0.37	0.970542
9593	dm3.chr3R	7,575,280 – 7,575,414	- - - - - - - -	13163	7,575,280 – 7,575,386	+	7	113	65.14	-1.63	0.46	0.981147
				13164	7,575,280 – 7,575,386	-	7	113	65.14	-2.04	0.47	0.996165
				13165	7,575,316 – 7,575,414	+	7	114	64.92	-2.08	0.42	0.986855
				13166	7,575,316 – 7,575,414	-	7	114	64.92	-2.42	0.48	0.998401
9594	dm3.chr3R	7,578,995 – 7,579,182	- - CDS="CDS;ID=CDS_CG17342:6_41;Name=Lk6-cds;Parent=FBtr0082534,FBtr0082535;parent_type=mRNA" - - - - -	13167	7,578,995 – 7,579,087	+	8	99	78.03	-3.06	0.56	0.995904
9597	dm3.chr3R	7,586,220 – 7,586,413	- - - - - - - -	13171	7,586,220 – 7,586,322	-	6	103	75.80	-2.23	0.47	0.926010
9603	dm3.chr3R	7,626,549 – 7,626,642	- - - - - - - -	13179	7,626,549 – 7,626,642	-	11	114	59.21	-0.40	0.71	0.980252
9604	dm3.chr3R	7,633,533 – 7,633,615	- - - - - - - -	13180	7,633,533 – 7,633,615	+	7	89	63.93	-2.56	0.47	0.999228
9605	dm3.chr3R	7,634,857 – 7,635,007	- - - - - - - -	13182	7,634,933 – 7,635,007	-	4	84	58.69	-1.18	0.56	0.920745
9606	dm3.chr3R	7,655,894 – 7,655,948	- - - intron="intron;ID=intron_FBgn0037956:2_FBgn0037956:1;Name=CG6959-in;Parent=FBtr0082517,FBtr0299594;parent_type=mRNA" - - - -	13183	7,655,894 – 7,655,948	+	5	57	89.86	-2.84	0.74	0.962036
9607	dm3.chr3R	7,671,766 – 7,671,864	- - - intron="intron;ID=intron_FBgn0037956:3_FBgn0037956:2;Name=CG6959-in;Parent=FBtr0299594;parent_type=mRNA" - - - -	13185	7,671,766 – 7,671,864	-	3	107	60.95	-1.72	0.49	0.927521
9611	dm3.chr3R	7,697,127 – 7,697,225	- - - - - - - -	13189	7,697,127 – 7,697,225	+	5	109	85.21	-2.47	0.73	0.953305
9620	dm3.chr3R	7,743,393 – 7,743,501	- - - - - - - -	13198	7,743,393 – 7,743,501	-	4	111	81.13	-2.87	0.59	0.972136
9622	dm3.chr3R	7,750,569 – 7,750,697	- - - - - - - -	13201	7,750,600 – 7,750,697	+	7	103	61.12	-2.67	0.49	0.999836
9626	dm3.chr3R	7,761,794 – 7,761,886	- - - - - - - -	13205	7,761,794 – 7,761,886	-	6	93	80.22	-2.98	0.59	0.994665
9628	dm3.chr3R	7,778,802 – 7,778,894	- - - - - - - -	13207	7,778,802 – 7,778,894	+	12	103	66.29	-1.93	0.45	0.996033
9630	dm3.chr3R	7,853,305 – 7,853,405	- - - - - - - -	13209	7,853,305 – 7,853,405	+	8	109	73.31	-2.08	0.64	0.994124
9632	dm3.chr3R	7,857,898 – 7,857,996	- - - - - - - -	13212	7,857,898 – 7,857,996	+	6	100	82.19	-1.37	1.01	0.968052
9635	dm3.chr3R	7,896,157 – 7,896,267	- - - intron="intron;ID=intron_FBgn0037989:4_FBgn0037989:3;Name=CG14741-in;Parent=FBtr0300351;parent_type=mRNA" - - - -	13215	7,896,157 – 7,896,267	+	4	119	59.16	-1.09	0.52	0.934852
9636	dm3.chr3R	7,903,709 – 7,903,829	- - - - - - - -	13216	7,903,709 – 7,903,829	+	3	120	96.39	-1.70	0.99	0.938826
9637	dm3.chr3R	7,907,308 – 7,907,412	- - - - - - - -	13217	7,907,308 – 7,907,412	+	5	104	89.71	-2.21	0.85	0.949337
9639	dm3.chr3R	7,915,627 – 7,915,721	- - - - - - - -	13221	7,915,627 – 7,915,721	-	5	118	62.89	-1.65	0.62	0.995584
9640	dm3.chr3R	7,922,761 – 7,922,858	- - - intron="intron;ID=intron_FBgn0051361:2_FBgn0051361:4;Name=dpr17-in;Parent=FBtr0082542;parent_type=mRNA" - - - -	13222	7,922,761 – 7,922,858	+	8	108	72.35	-2.30	0.38	0.920497
9640	dm3.chr3R	7,922,761 – 7,922,858		13223	7,922,761 – 7,922,858	-	8	108	72.35	-2.48	0.56	0.997162
9642	dm3.chr3R	7,957,023 – 7,957,165	FBnoncoding="tRNA;ID=FBtr0082544;Name=tRNA:K5:87BC-RA;Parent=FBgn0011905;Dbxref=FlyBase_Annotation_IDs:CR31197-RA;score_text=Weakly" tRNAscann="Lys_chr3R_trna9" - - "Rfam_10.0=RF00005;tRNA;AAJJ01001092.1/1840-1912\|1.0e-29" "Noncode_2.0=n103595_u102693_DQ614086_piRNA_Norway\|4.8e-07" "unique_Noncode_2.0=u102692_piRNA_Norway\|4.2e-07" -	13225	7,957,023 – 7,957,165	+	11	153	67.76	-1.66	0.74	0.998705
9642	dm3.chr3R	7,957,023 – 7,957,165		13226	7,957,023 – 7,957,165	-	11	153	67.76	-1.83	0.80	0.998931
9647	dm3.chr3R	7,982,947 – 7,983,037	- - - intron="intron;ID=intron_CG10095:1_CG10095:2;Name=dpr15-in;Parent=FBtr0082549;parent_type=mRNA" - - - -	13231	7,982,947 – 7,983,037	-	5	98	93.56	-2.79	0.80	0.955770
9649	dm3.chr3R	8,017,649 – 8,017,707	- - - - - - - -	13234	8,017,649 – 8,017,707	-	3	64	92.71	-2.86	0.95	0.994258
9650	dm3.chr3R	8,022,729 – 8,022,789	- - - - - - - -	13235	8,022,729 – 8,022,789	-	5	60	96.67	-3.09	1.00	0.997233
9651	dm3.chr3R	8,029,524 – 8,029,655	- - - - - - - -	13239	8,029,547 – 8,029,655	-	12	120	83.76	-2.38	0.60	0.927720
9652	dm3.chr3R	8,037,320 – 8,037,483	- - - - - - - -	13240	8,037,320 – 8,037,417	+	5	120	81.71	-2.68	0.57	0.952334
9653	dm3.chr3R	8,045,190 – 8,045,316	- - CDS="CDS;ID=CDS_CG4848:1_38;Name=CG4848-cds;Parent=FBtr0082624;parent_type=mRNA" - - - - -	13242	8,045,190 – 8,045,304	+	13	120	80.65	-2.20	0.60	0.963029
9656	dm3.chr3R	8,065,823 – 8,065,964	- - - - - - - -	13246	8,065,823 – 8,065,930	+	6	114	81.77	-2.44	0.64	0.957593
9660	dm3.chr3R	8,079,568 – 8,079,658	- - - - - - - -	13251	8,079,568 – 8,079,658	-	11	114	72.24	-1.64	0.55	0.951088
9662	dm3.chr3R	8,091,360 – 8,091,451	- - - intron="intron;ID=intron_FBgn0003651:1_FBgn0003651:4;Name=svp-in;Parent=FBtr0082562;parent_type=mRNA" - - - -	13253	8,091,360 – 8,091,451	+	10	98	67.34	-1.87	0.39	0.969023
9664	dm3.chr3R	8,093,171 – 8,093,268	- - - intron="intron;ID=intron_FBgn0003651:1_FBgn0003651:4;Name=svp-in;Parent=FBtr0082562;parent_type=mRNA" - - - -	13255	8,093,171 – 8,093,268	+	12	118	72.79	-1.57	0.57	0.940782
9670	dm3.chr3R	8,111,606 – 8,111,712	- - - intron="intron;ID=intron_FBgn0003651:3_FBgn0003651:4;Name=svp-in;Parent=FBtr0082564;parent_type=mRNA" - - - -	13262	8,111,606 – 8,111,712	+	6	116	61.81	-2.06	0.40	0.976370
9670	dm3.chr3R	8,111,606 – 8,111,712		13263	8,111,606 – 8,111,712	-	6	116	61.81	-1.21	0.50	0.920899
9672	dm3.chr3R	8,123,880 – 8,123,975	- - - intron="intron;ID=intron_FBgn0003651:5_FBgn0003651:7;Name=svp-in;Parent=FBtr0082562,FBtr0082564;parent_type=mRNA" - - - -	13267	8,123,880 – 8,123,975	+	9	109	72.73	-1.97	0.47	0.900107
9674	dm3.chr3R	8,127,191 – 8,127,289	- - - - - - - -	13270	8,127,191 – 8,127,289	-	5	98	98.37	-2.34	0.99	0.984947
9676	dm3.chr3R	8,148,264 – 8,148,356	FBnoncoding="tRNA;ID=FBtr0082616;Name=tRNA:CR31432-RA;Parent=FBgn0051432;Alias=CR31432-RA;Dbxref=FlyBase_Annotation_IDs:CR31432-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna61" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000381.1/59414-59485\|4.1e-34" - - -	13272	8,148,264 – 8,148,356	+	12	102	82.87	-2.92	0.90	0.998017
9676	dm3.chr3R	8,148,264 – 8,148,356		13273	8,148,264 – 8,148,356	-	12	102	82.87	-1.71	0.96	0.982662
9677	dm3.chr3R	8,161,969 – 8,162,060	- - - - - - - -	13274	8,161,969 – 8,162,060	+	10	121	57.50	-1.36	0.47	0.982610
9678	dm3.chr3R	8,163,398 – 8,163,492	- - - - - - - -	13276	8,163,398 – 8,163,492	-	7	113	71.38	-1.63	0.62	0.971047
9680	dm3.chr3R	8,171,129 – 8,171,232	- - - - - - - -	13280	8,171,129 – 8,171,232	-	6	105	78.45	-2.28	0.65	0.975506
9682	dm3.chr3R	8,185,023 – 8,185,297	- - - - - - - -	13282	8,185,023 – 8,185,190	+	6	178	75.43	-2.05	0.50	0.916814
9682	dm3.chr3R	8,185,023 – 8,185,297	- - - - - - - -	13284	8,185,190 – 8,185,297	-	3	118	72.86	-2.57	0.54	0.945766
9688	dm3.chr3R	8,269,508 – 8,269,641	- - - intron="intron;ID=intron_CG5887:8_CG5887:2;Name=desat1-in;Parent=FBtr0082629;parent_type=mRNA" - - - -	13290	8,269,508 – 8,269,641	+	6	136	79.50	-2.10	0.59	0.915718
9688	dm3.chr3R	8,269,508 – 8,269,641		13291	8,269,508 – 8,269,641	-	6	136	79.50	-2.97	0.67	0.997126
9693	dm3.chr3R	8,340,164 – 8,340,260	- - - intron="intron;ID=intron_FBgn0250910:4_FBgn0250910:3;Name=Octbeta3R-in;Parent=FBtr0290334;parent_type=mRNA" - - - -	13297	8,340,164 – 8,340,260	+	6	107	68.86	-1.74	0.45	0.914679
9693	dm3.chr3R	8,340,164 – 8,340,260		13298	8,340,164 – 8,340,260	-	6	107	68.86	-2.49	0.32	0.922166
9696	dm3.chr3R	8,357,488 – 8,357,590	- - - - - - - -	13301	8,357,488 – 8,357,590	+	7	102	72.11	-1.67	0.54	0.902430
9697	dm3.chr3R	8,364,098 – 8,364,180	- - - - - - - -	13303	8,364,098 – 8,364,180	-	6	92	75.61	-1.93	0.66	0.970879
9698	dm3.chr3R	8,364,917 – 8,365,010	- - - - - - - -	13304	8,364,917 – 8,365,010	+	4	93	84.50	-2.44	0.72	0.941175
9701	dm3.chr3R	8,377,236 – 8,377,335	FBnoncoding="pre_miRNA;ID=FBtr0304230;Name=mir-284-RM;Parent=FBgn0262383;Alias=CR42906-RM;Dbxref=FlyBase_Annotation_IDs:CR42906-RM,miRBase:MI0000369" - - - - - - "mirBase_v16=dme-mir-284\|6.6e-52"	13307	8,377,236 – 8,377,335	+	12	120	89.40	-2.37	0.87	0.978681
9701	dm3.chr3R	8,377,236 – 8,377,335		13308	8,377,236 – 8,377,335	-	12	120	89.40	-3.33	0.90	0.997760
9704	dm3.chr3R	8,403,569 – 8,403,664	- - - intron="intron;ID=intron_FBgn0038063:11_FBgn0038063:10;Name=Octbeta2R-in;Parent=FBtr0304846;parent_type=mRNA" - - - -	13311	8,403,569 – 8,403,664	-	12	120	81.95	-2.17	0.62	0.906317
9707	dm3.chr3R	8,419,650 – 8,419,746	- - - - - - - -	13315	8,419,650 – 8,419,746	-	7	107	87.70	-3.07	0.70	0.987178
9721	dm3.chr3R	8,495,923 – 8,496,072	- - CDS="CDS;ID=CDS_FBgn0038073:5_175;Name=CG14395-cds;Parent=FBtr0300769,FBtr0300770;parent_type=mRNA" - - - - -	13331	8,495,923 – 8,496,072	+	12	149	77.61	-2.01	0.55	0.928359
9721	dm3.chr3R	8,495,923 – 8,496,072		13332	8,495,923 – 8,496,072	-	12	149	77.61	-2.73	0.55	0.993126
9729	dm3.chr3R	8,562,435 – 8,562,538	- - - - - - - -	13340	8,562,435 – 8,562,538	+	12	120	77.69	-2.60	0.47	0.971688
9730	dm3.chr3R	8,574,158 – 8,574,252	- - - intron="intron;ID=intron_FBgn0038084:4_FBgn0038084:3;Name=beat-Vc-in;Parent=FBtr0082658;parent_type=mRNA" - - - -	13341	8,574,158 – 8,574,252	+	5	94	98.26	-2.96	0.86	0.970776
9737	dm3.chr3R	8,612,665 – 8,612,762	- - - - - - - -	13351	8,612,665 – 8,612,762	-	11	109	63.52	-0.81	0.52	0.935171
9740	dm3.chr3R	8,641,153 – 8,641,255	- - - intron="intron;ID=intron_FBgn0051345:5_FBgn0051345:4;Name=CG31345-in;Parent=FBtr0082689;parent_type=mRNA" - - - -	13356	8,641,153 – 8,641,255	+	9	123	65.42	-2.13	0.36	0.959040
9741	dm3.chr3R	8,641,780 – 8,641,873	- - - intron="intron;ID=intron_FBgn0051345:5_FBgn0051345:4;Name=CG31345-in;Parent=FBtr0082689;parent_type=mRNA" - - - -	13358	8,641,780 – 8,641,873	-	6	97	81.82	-2.41	0.56	0.912066
9746	dm3.chr3R	8,653,452 – 8,653,545	- - - - - - - -	13368	8,653,452 – 8,653,545	-	9	116	71.50	-1.86	0.54	0.951293
9749	dm3.chr3R	8,661,620 – 8,661,713	- - - - - - - -	13371	8,661,620 – 8,661,713	+	7	103	69.41	-1.42	0.67	0.989450
9750	dm3.chr3R	8,663,700 – 8,663,853	- - - - - - - -	13372	8,663,700 – 8,663,816	-	12	120	96.37	-3.65	0.88	0.996302
				13373	8,663,736 – 8,663,839	-	12	113	85.54	-1.96	0.75	0.926816
				13374	8,663,750 – 8,663,853	-	12	113	77.70	-2.19	0.56	0.984775
9753	dm3.chr3R	8,675,873 – 8,675,961	- - - - - - - -	13377	8,675,873 – 8,675,961	-	7	93	62.56	-2.27	0.39	0.996575
9760	dm3.chr3R	8,727,531 – 8,727,630	- - - - - - - -	13384	8,727,531 – 8,727,630	+	12	115	75.33	-2.26	0.55	0.979907
9764	dm3.chr3R	8,743,705 – 8,743,810	- - - intron="intron;ID=intron_CG31298:1_CG31298:2;Name=beat-Vb-in;Parent=FBtr0082684;parent_type=mRNA" - - - -	13390	8,743,705 – 8,743,810	-	9	109	79.28	-2.90	0.61	0.997811
9767	dm3.chr3R	8,771,275 – 8,771,369	- - - - - - - -	13393	8,771,275 – 8,771,369	+	8	104	79.21	-1.54	0.95	0.977446
9767	dm3.chr3R	8,771,275 – 8,771,369	- - - - - - - -	13394	8,771,275 – 8,771,369	-	8	104	79.21	-1.14	0.94	0.936861
9770	dm3.chr3R	8,811,985 – 8,812,076	- - CDS="CDS;ID=CDS_FBgn0051342:1_230;Name=CG31342-cds;Parent=FBtr0113404;parent_type=mRNA" - - - - -	13399	8,811,985 – 8,812,076	-	7	91	72.37	-1.17	0.61	0.926441
9773	dm3.chr3R	8,833,396 – 8,833,490	- - - intron="intron;ID=intron_FBgn0038108:16_FBgn0038108:18;Name=CG7518-in;Parent=FBtr0301224;parent_type=mRNA" - - - -	13403	8,833,396 – 8,833,490	+	11	111	57.44	-0.46	0.51	0.922832
9775	dm3.chr3R	8,841,427 – 8,841,536	- - - intron="intron;ID=intron_CG7583:13_CG7583:2;Name=CtBP-in;Parent=FBtr0082700;parent_type=mRNA" - - - -	13405	8,841,427 – 8,841,536	+	6	113	73.33	-1.70	0.56	0.933507
9777	dm3.chr3R	8,885,128 – 8,885,264	- - - intron="intron;ID=intron_CG7771:1_CG7771:3;Name=sim-in;Parent=FBtr0082711;parent_type=mRNA" - - - -	13408	8,885,128 – 8,885,264	+	7	149	75.54	-2.21	0.52	0.957554
9777	dm3.chr3R	8,885,128 – 8,885,264		13409	8,885,128 – 8,885,264	-	7	149	75.54	-2.29	0.61	0.989160
9778	dm3.chr3R	8,895,101 – 8,895,237	- - - intron="intron;ID=intron_CG7771:1_CG7771:3;Name=sim-in;Parent=FBtr0082711;parent_type=mRNA" - - - -	13412	8,895,139 – 8,895,237	+	3	98	91.70	-2.47	0.88	0.966838
9779	dm3.chr3R	8,922,894 – 8,923,015	- - - intron="intron;ID=intron_CG7855:5_CG7855:6;Name=timeout-in;Parent=FBtr0082712;parent_type=mRNA" - - - -	13414	8,922,894 – 8,923,010	-	12	120	94.61	-1.97	0.91	0.926547
9780	dm3.chr3R	8,924,881 – 8,924,938	- - - intron="intron;ID=intron_CG7855:6_CG7855:7;Name=timeout-in;Parent=FBtr0082712;parent_type=mRNA" - - - -	13417	8,924,881 – 8,924,938	+	6	60	78.62	-1.95	0.62	0.918563
9780	dm3.chr3R	8,924,881 – 8,924,938		13418	8,924,881 – 8,924,938	-	6	60	78.62	-2.53	0.74	0.994901
9781	dm3.chr3R	8,930,359 – 8,930,477	- - - intron="intron;ID=intron_CG7855:7_CG7855:8;Name=timeout-in;Parent=FBtr0082712;parent_type=mRNA" - - - -	13419	8,930,359 – 8,930,477	+	6	118	75.31	-2.00	0.55	0.958221
9782	dm3.chr3R	8,956,886 – 8,956,939	- - - intron="intron;ID=intron_FBgn0260793:2_FBgn0260793:1;Name=2mit-in;Parent=FBtr0301436;parent_type=mRNA" - - - -	13420	8,956,886 – 8,956,939	+	6	66	62.54	-0.82	0.63	0.972915
9782	dm3.chr3R	8,956,886 – 8,956,939		13421	8,956,886 – 8,956,939	-	6	66	62.54	-1.76	0.47	0.991807
9786	dm3.chr3R	8,975,918 – 8,976,022	- - - intron="intron;ID=intron_FBgn0260793:3_FBgn0260793:2;Name=2mit-in;Parent=FBtr0301436;parent_type=mRNA" - - - -	13425	8,975,918 – 8,976,022	+	11	108	76.76	-1.96	0.54	0.953207
9787	dm3.chr3R	8,989,405 – 8,989,518	- - CDS="CDS;ID=CDS_CG7855:18_47;Name=timeout-cds;Parent=FBtr0082712;parent_type=mRNA" - - - - -	13427	8,989,405 – 8,989,513	-	10	117	81.74	-3.07	0.75	0.997915
9787	dm3.chr3R	8,989,405 – 8,989,518		13429	8,989,410 – 8,989,518	-	10	117	81.69	-2.86	0.80	0.997308
9790	dm3.chr3R	9,022,170 – 9,022,281	- - - - - - - -	13433	9,022,170 – 9,022,281	+	5	111	90.90	-2.14	0.90	0.960749
9790	dm3.chr3R	9,022,170 – 9,022,281	- - - - - - - -	13434	9,022,170 – 9,022,281	-	5	111	90.90	-3.24	0.82	0.993316
9794	dm3.chr3R	9,044,900 – 9,044,992	- - - - - - - -	13440	9,044,900 – 9,044,992	-	5	97	91.06	-2.86	0.78	0.971031
9801	dm3.chr3R	9,108,123 – 9,108,227	- - CDS="CDS;ID=CDS_CG8630:2_46;Name=CG8630-cds;Parent=FBtr0082737;parent_type=mRNA" - - - - -	13448	9,108,123 – 9,108,227	-	11	110	76.60	-2.38	0.59	0.996310
9805	dm3.chr3R	9,199,194 – 9,199,320	- - - - - - - -	13453	9,199,230 – 9,199,320	+	6	97	85.46	-2.10	0.87	0.971931
9806	dm3.chr3R	9,201,861 – 9,201,961	- - - intron="intron;ID=intron_CG9813:5_CG9813:6;Name=CG9813-in;Parent=FBtr0082769,FBtr0082770,FBtr0082765,FBtr0082766,FBtr0082767,FBtr0082768;parent_type=mRNA" - - - -	13455	9,201,861 – 9,201,961	-	4	105	63.92	-2.00	0.45	0.933161
9808	dm3.chr3R	9,241,347 – 9,241,493	- - - - - - - -	13457	9,241,347 – 9,241,453	-	8	119	66.26	-2.62	0.32	0.981240
9808	dm3.chr3R	9,241,347 – 9,241,493	- - - - - - - -	13458	9,241,386 – 9,241,493	-	8	120	74.89	-2.68	0.39	0.933383
9809	dm3.chr3R	9,257,886 – 9,257,996	- - CDS="CDS;ID=CDS_FBgn0004049:8_38;Name=yrt-cds;Parent=FBtr0082793;parent_type=mRNA" - - - - -	13460	9,257,892 – 9,257,996	-	12	108	65.35	-1.69	0.36	0.945020
9812	dm3.chr3R	9,268,906 – 9,269,005	- - - - - - - -	13464	9,268,906 – 9,269,005	-	5	100	93.18	-2.48	0.88	0.968772
9813	dm3.chr3R	9,269,543 – 9,269,647	- - - - - - - -	13465	9,269,543 – 9,269,647	-	11	116	86.03	-1.96	0.77	0.906088
9815	dm3.chr3R	9,289,944 – 9,290,026	FBnoncoding="pre_miRNA;ID=FBtr0304493;Name=mir-252-RM;Parent=FBgn0262323;Alias=CR43030-RM;Dbxref=FlyBase_Annotation_IDs:CR43030-RM,miRBase:MI0005858" - - - - - - "mirBase_v16=dsi-mir-252\|7.4e-42"	13469	9,289,944 – 9,290,026	+	14	90	88.48	-3.45	0.82	0.998155
9815	dm3.chr3R	9,289,944 – 9,290,026		13470	9,289,944 – 9,290,026	-	14	90	88.48	-4.51	0.90	0.999264
9817	dm3.chr3R	9,295,873 – 9,295,970	- - - - - - - -	13473	9,295,873 – 9,295,970	-	5	102	81.72	-2.53	0.64	0.956602
9821	dm3.chr3R	9,311,392 – 9,311,494	- - - - - - - -	13480	9,311,392 – 9,311,494	-	8	110	74.14	-1.22	0.69	0.922873
9824	dm3.chr3R	9,321,114 – 9,321,212	- - - - - - - -	13485	9,321,114 – 9,321,212	+	6	111	80.14	-2.41	0.66	0.976400
9824	dm3.chr3R	9,321,114 – 9,321,212	- - - - - - - -	13486	9,321,114 – 9,321,212	-	6	111	80.14	-3.09	0.66	0.996627
9825	dm3.chr3R	9,325,679 – 9,325,777	- - - - - - - -	13487	9,325,679 – 9,325,777	+	3	107	65.16	-2.85	0.60	0.997917
9827	dm3.chr3R	9,329,435 – 9,329,553	- - - - - - - -	13489	9,329,435 – 9,329,553	+	6	118	77.13	-2.17	0.62	0.967676
9827	dm3.chr3R	9,329,435 – 9,329,553	- - - - - - - -	13490	9,329,435 – 9,329,553	-	6	118	77.13	-2.57	0.51	0.966701
9831	dm3.chr3R	9,344,193 – 9,344,296	- - - - - - - -	13495	9,344,193 – 9,344,296	-	3	105	51.91	-2.39	0.27	0.936805
9834	dm3.chr3R	9,351,631 – 9,351,725	- - - - - - - -	13499	9,351,631 – 9,351,725	+	12	109	69.13	-2.18	0.34	0.939997
9835	dm3.chr3R	9,356,183 – 9,356,289	- - - - - - - -	13502	9,356,183 – 9,356,289	-	7	107	78.46	-2.25	0.70	0.991840
9839	dm3.chr3R	9,362,838 – 9,362,933	- - - - - - - -	13507	9,362,838 – 9,362,933	-	9	115	71.67	-2.63	0.37	0.972892
9840	dm3.chr3R	9,364,883 – 9,364,988	- - - - - - - -	13508	9,364,883 – 9,364,977	+	10	116	88.88	-1.95	0.91	0.961974
				13509	9,364,883 – 9,364,977	-	10	116	88.88	-2.10	0.93	0.980112
				13511	9,364,897 – 9,364,988	-	11	120	88.08	-2.27	0.91	0.983445
9842	dm3.chr3R	9,373,365 – 9,373,418	- - - - - - - -	13513	9,373,365 – 9,373,418	-	5	53	88.66	-1.20	1.00	0.918114
9843	dm3.chr3R	9,374,209 – 9,374,327	- - - - - - - -	13514	9,374,209 – 9,374,327	-	12	129	73.31	-2.39	0.35	0.929719
9844	dm3.chr3R	9,378,472 – 9,378,597	- - - - - - - -	13515	9,378,472 – 9,378,570	+	11	116	81.29	-2.79	0.79	0.996915
9844	dm3.chr3R	9,378,472 – 9,378,597	- - - - - - - -	13517	9,378,488 – 9,378,597	+	12	118	91.81	-2.08	0.91	0.961775
9845	dm3.chr3R	9,379,277 – 9,379,391	- - - - - - - -	13518	9,379,277 – 9,379,391	+	8	114	86.98	-2.45	0.66	0.923486
9849	dm3.chr3R	9,399,967 – 9,400,085	- - - - - - - -	13524	9,399,967 – 9,400,085	+	12	119	78.54	-2.30	0.54	0.977468
9859	dm3.chr3R	9,443,266 – 9,443,386	- - - - - - - -	13537	9,443,266 – 9,443,386	-	5	120	97.67	-2.09	0.96	0.957370
9865	dm3.chr3R	9,499,097 – 9,499,177	- - - - - - - -	13546	9,499,097 – 9,499,177	+	9	88	76.11	-2.92	0.34	0.943577
9865	dm3.chr3R	9,499,097 – 9,499,177	- - - - - - - -	13547	9,499,097 – 9,499,177	-	9	88	76.11	-3.21	0.30	0.952559
9868	dm3.chr3R	9,508,892 – 9,509,004	- - - - - - - -	13551	9,508,892 – 9,509,004	-	5	112	88.48	-3.18	0.79	0.993699
9869	dm3.chr3R	9,509,643 – 9,509,739	- - - intron="intron;ID=intron_CG9591:1_CG9591:2;Name=omd-in;Parent=FBtr0082848;parent_type=mRNA" - - - -	13552	9,509,643 – 9,509,739	-	7	103	83.62	-2.50	0.63	0.954190
9872	dm3.chr3R	9,539,576 – 9,539,764	- - - intron="intron;ID=intron_FBgn0054044:3_FBgn0054044:2;Name=CG34044-in;Parent=FBtr0100099;parent_type=mRNA" - - - -	13557	9,539,698 – 9,539,764	-	3	67	75.68	-1.69	0.81	0.906996
9874	dm3.chr3R	9,551,617 – 9,551,684	- - - intron="intron;ID=intron_FBgn0085412:2_FBgn0085412:3;Name=CG34383-in;Parent=FBtr0112621,FBtr0112622,FBtr0112623,FBtr0112624;parent_type=mRNA" - - - -	13559	9,551,617 – 9,551,684	+	8	70	69.96	-2.38	0.34	0.928072
9875	dm3.chr3R	9,557,471 – 9,557,618	- - - intron="intron;ID=intron_FBgn0085412:2_FBgn0085412:3;Name=CG34383-in;Parent=FBtr0112621,FBtr0112622,FBtr0112623,FBtr0112624;parent_type=mRNA" - - - -	13560	9,557,471 – 9,557,588	+	6	119	73.67	-2.24	0.42	0.909275
9875	dm3.chr3R	9,557,471 – 9,557,618		13561	9,557,503 – 9,557,618	+	5	119	90.96	-2.05	0.87	0.922719
9876	dm3.chr3R	9,558,712 – 9,558,812	- - - intron="intron;ID=intron_FBgn0085412:2_FBgn0085412:3;Name=CG34383-in;Parent=FBtr0112621,FBtr0112622,FBtr0112623,FBtr0112624;parent_type=mRNA" - - - -	13562	9,558,712 – 9,558,812	+	9	115	69.24	-1.25	0.59	0.929260
9880	dm3.chr3R	9,597,513 – 9,597,642	- - - intron="intron;ID=intron_CG9297:1_CG9297:2;Name=CG9297-in;Parent=FBtr0082828,FBtr0082827;parent_type=mRNA" - - - -	13568	9,597,513 – 9,597,619	+	12	115	84.78	-5.06	0.79	0.999599
				13569	9,597,513 – 9,597,619	-	12	115	84.78	-3.29	0.79	0.998162
				13570	9,597,551 – 9,597,642	+	10	100	81.48	-1.94	0.85	0.984005
				13571	9,597,551 – 9,597,642	-	10	100	81.48	-2.42	0.86	0.995147
9882	dm3.chr3R	9,598,068 – 9,598,139	- - CDS="CDS;ID=CDS_CG9297:2_48;Name=CG9297-cds;Parent=FBtr0082828,FBtr0082827;parent_type=mRNA" - - - - -	13573	9,598,068 – 9,598,139	+	13	76	85.49	-1.90	0.85	0.971796
9887	dm3.chr3R	9,633,154 – 9,633,308	- - - - - - - -	13579	9,633,154 – 9,633,206	-	7	55	71.90	-1.90	0.60	0.980699
9888	dm3.chr3R	9,644,699 – 9,644,846	- - - - - - - -	13581	9,644,699 – 9,644,807	-	12	119	78.23	-2.28	0.49	0.939142
9890	dm3.chr3R	9,656,720 – 9,656,876	- - - - - - - -	13586	9,656,756 – 9,656,860	+	7	105	81.63	-2.67	0.69	0.991256
				13587	9,656,756 – 9,656,860	-	7	105	81.63	-2.23	0.70	0.970078
				13588	9,656,764 – 9,656,876	+	8	119	68.73	-2.11	0.53	0.995911
				13589	9,656,764 – 9,656,876	-	8	119	68.73	-1.60	0.46	0.932728
9893	dm3.chr3R	9,673,838 – 9,673,929	- - - - - - - -	13593	9,673,838 – 9,673,929	-	4	91	87.00	-2.56	0.70	0.918858
9894	dm3.chr3R	9,679,388 – 9,679,484	- - - - - - - -	13595	9,679,388 – 9,679,484	-	10	110	78.26	-1.42	0.81	0.961795
9895	dm3.chr3R	9,682,079 – 9,682,171	- - - - - - - -	13596	9,682,079 – 9,682,171	-	12	120	74.34	-1.77	0.51	0.910780
9897	dm3.chr3R	9,700,299 – 9,700,367	- - - - - - - -	13598	9,700,299 – 9,700,367	+	5	68	97.65	-1.37	1.01	0.902455
9899	dm3.chr3R	9,707,784 – 9,707,875	- - - - - - - -	13600	9,707,784 – 9,707,875	-	7	113	59.72	-1.63	0.36	0.931095
9900	dm3.chr3R	9,708,552 – 9,708,718	- - - - - - - -	13601	9,708,552 – 9,708,642	+	4	95	87.93	-1.97	0.89	0.945829
9900	dm3.chr3R	9,708,552 – 9,708,718	- - - - - - - -	13603	9,708,614 – 9,708,718	+	5	109	86.60	-2.85	0.73	0.981185
9901	dm3.chr3R	9,709,560 – 9,709,691	- - - - - - - -	13604	9,709,560 – 9,709,653	-	6	115	79.69	-2.55	0.75	0.992300
9907	dm3.chr3R	9,750,162 – 9,750,323	- - - - - - - -	13613	9,750,182 – 9,750,296	+	12	119	84.80	-3.08	0.85	0.998111
9907	dm3.chr3R	9,750,162 – 9,750,323	- - - - - - - -	13615	9,750,216 – 9,750,323	+	12	115	86.43	-3.30	0.77	0.997783
9909	dm3.chr3R	9,759,108 – 9,759,199	- - - - - - - -	13617	9,759,108 – 9,759,199	+	8	109	66.95	-1.83	0.59	0.994414
9918	dm3.chr3R	9,804,123 – 9,804,220	- - - - - - - -	13627	9,804,123 – 9,804,218	-	4	101	83.07	-2.47	0.77	0.970119
9918	dm3.chr3R	9,804,123 – 9,804,220	- - - - - - - -	13628	9,804,125 – 9,804,220	-	4	101	82.36	-2.39	0.81	0.977694
9922	dm3.chr3R	9,825,317 – 9,825,391	- - - - - - - -	13632	9,825,317 – 9,825,391	+	6	77	91.42	-1.86	0.90	0.919970
9922	dm3.chr3R	9,825,317 – 9,825,391	- - - - - - - -	13633	9,825,317 – 9,825,391	-	6	77	91.42	-3.11	0.78	0.986879
9924	dm3.chr3R	9,826,506 – 9,826,564	- - - - - - - -	13636	9,826,506 – 9,826,564	-	5	71	78.96	-2.08	0.69	0.938893
9926	dm3.chr3R	9,830,171 – 9,830,264	- - - - - - - -	13638	9,830,171 – 9,830,264	+	4	99	86.10	-2.62	0.75	0.956213
9926	dm3.chr3R	9,830,171 – 9,830,264	- - - - - - - -	13639	9,830,171 – 9,830,264	+	4	96	88.26	-2.65	0.82	0.975388
9928	dm3.chr3R	9,870,242 – 9,870,338	FBnoncoding="tRNA;ID=FBtr0082919;Name=tRNA:S2b:88A-RA;Parent=FBgn0011971;Dbxref=FlyBase_Annotation_IDs:CR31476-RA;score_text=Weakly" tRNAscann="Ser_chr3R_trna59" - - "Rfam_10.0=RF00005;tRNA;ABAV01026808.1/8968-9050\|2.7e-32" "Noncode_2.0=n202744_u198018_AK082357_mRNAlike\|1.7e-33" "unique_Noncode_2.0=u198018_mRNAlike\|1.5e-33" -	13641	9,870,242 – 9,870,338	+	13	111	90.49	-1.83	0.98	0.978909
9928	dm3.chr3R	9,870,242 – 9,870,338		13642	9,870,242 – 9,870,338	-	13	111	90.49	-1.98	0.99	0.987009
9936	dm3.chr3R	9,945,627 – 9,945,742	- - - - - - - -	13652	9,945,627 – 9,945,737	+	8	118	65.82	-2.88	0.48	0.999646
				13653	9,945,627 – 9,945,737	-	8	118	65.82	-3.05	0.37	0.998821
				13654	9,945,632 – 9,945,742	+	8	120	67.73	-4.05	0.53	0.999956
				13655	9,945,632 – 9,945,742	-	8	120	67.73	-3.70	0.42	0.999813
9937	dm3.chr3R	9,946,215 – 9,946,310	- - - intron="intron;ID=intron_FBgn0020510:3_FBgn0020510:2;Name=Abi-in;Parent=FBtr0082910,FBtr0112896;parent_type=mRNA" - - - -	13656	9,946,215 – 9,946,310	+	5	115	75.18	-2.33	0.59	0.977502
9939	dm3.chr3R	9,959,320 – 9,959,415	- - - - - - - -	13659	9,959,320 – 9,959,415	+	6	108	77.91	-1.56	0.74	0.909692
9941	dm3.chr3R	9,969,544 – 9,969,666	- - - - - - - -	13663	9,969,561 – 9,969,666	-	8	105	65.98	-1.82	0.33	0.912490
9942	dm3.chr3R	9,971,983 – 9,972,143	- - - - - - - -	13664	9,971,983 – 9,972,088	-	11	112	70.86	-1.52	0.53	0.965777
9943	dm3.chr3R	9,988,092 – 9,988,206	- - - - - - - -	13666	9,988,092 – 9,988,206	+	6	142	62.61	-1.25	0.53	0.918393
9949	dm3.chr3R	10,016,229 – 10,016,316	- - - intron="intron;ID=intron_FBgn0011582:3_FBgn0011582:2;Name=DopR-in;Parent=FBtr0290283,FBtr0301351;parent_type=mRNA" - - - -	13673	10,016,229 – 10,016,316	-	8	97	64.55	-1.15	0.59	0.982285
9950	dm3.chr3R	10,060,869 – 10,060,960	- - - - - - - -	13675	10,060,869 – 10,060,960	-	10	113	82.06	-1.49	0.82	0.907555
9959	dm3.chr3R	10,149,089 – 10,149,141	- - - intron="intron;ID=intron_FBgn0038223:2_FBgn0038223:1;Name=CG8538-in;Parent=FBtr0273391;parent_type=mRNA" - - - -	13685	10,149,089 – 10,149,141	-	4	53	94.03	-2.77	0.94	0.991946
9960	dm3.chr3R	10,163,838 – 10,163,937	- - - intron="intron;ID=intron_FBgn0024321:2_FBgn0024321:1;Name=NK7.1-in;Parent=FBtr0082941,FBtr0082942;parent_type=mRNA" - - - -	13686	10,163,838 – 10,163,937	+	4	104	55.28	-1.67	0.53	0.995569
9960	dm3.chr3R	10,163,838 – 10,163,937		13687	10,163,838 – 10,163,937	-	4	104	55.28	-2.04	0.42	0.992633
9962	dm3.chr3R	10,169,552 – 10,169,693	- - - intron="intron;ID=intron_FBgn0024321:3_FBgn0024321:2;Name=NK7.1-in;Parent=FBtr0082941,FBtr0082942;parent_type=mRNA" - - - -	13690	10,169,585 – 10,169,693	-	12	121	84.29	-2.00	0.78	0.949917
9965	dm3.chr3R	10,206,786 – 10,206,895	- - CDS="CDS;ID=CDS_CG8489:1_197;Name=soti-cds;Parent=FBtr0082940;parent_type=mRNA" - - - - -	13693	10,206,786 – 10,206,895	-	12	119	67.92	-2.27	0.45	0.995255
9967	dm3.chr3R	10,212,854 – 10,212,957	- - - - - - - -	13695	10,212,854 – 10,212,957	-	6	103	74.05	-2.66	0.43	0.982323
9968	dm3.chr3R	10,217,720 – 10,217,815	- - - - - - - -	13696	10,217,720 – 10,217,815	+	4	95	82.98	-3.40	0.71	0.996907
9968	dm3.chr3R	10,217,720 – 10,217,815	- - - - - - - -	13697	10,217,720 – 10,217,815	-	4	95	82.98	-3.44	0.72	0.997333
9971	dm3.chr3R	10,237,916 – 10,238,067	- - - intron="intron;ID=intron_FBgn0085418:12_FBgn0085418:11;Name=cv-c-in;Parent=FBtr0112630,FBtr0112632;parent_type=mRNA" - - - -	13701	10,237,916 – 10,238,007	-	12	106	71.78	-2.58	0.45	0.994879
9971	dm3.chr3R	10,237,916 – 10,238,067		13702	10,237,945 – 10,238,044	-	12	115	75.03	-2.06	0.51	0.966230
9976	dm3.chr3R	10,252,914 – 10,253,087	- - CDS="CDS;ID=CDS_FBgn0085418:13_137;Name=cv-c-cds;Parent=FBtr0112630;parent_type=mRNA" - - - - -	13712	10,252,914 – 10,253,008	-	3	94	89.30	-1.92	0.90	0.920655
9981	dm3.chr3R	10,297,929 – 10,298,042	- - - intron="intron;ID=intron_FBgn0085418:17_FBgn0085418:15;Name=cv-c-in;Parent=FBtr0112630;parent_type=mRNA" - - - -	13719	10,297,936 – 10,298,042	+	6	112	76.42	-2.49	0.52	0.979033
9984	dm3.chr3R	10,316,091 – 10,316,199	- - - - - - - -	13723	10,316,091 – 10,316,199	-	12	119	80.62	-3.41	0.59	0.998422
9985	dm3.chr3R	10,321,748 – 10,321,850	- - - - - - - -	13724	10,321,748 – 10,321,850	-	4	102	89.83	-3.36	0.66	0.974339
9986	dm3.chr3R	10,322,536 – 10,322,633	- - - - - - - -	13725	10,322,536 – 10,322,633	+	12	119	76.74	-1.48	0.74	0.949258
9986	dm3.chr3R	10,322,536 – 10,322,633	- - - - - - - -	13726	10,322,536 – 10,322,633	-	12	119	76.74	-1.84	0.57	0.919475
9989	dm3.chr3R	10,329,808 – 10,329,932	- - - - - - - -	13730	10,329,833 – 10,329,932	+	5	116	85.81	-2.60	0.80	0.983134
9992	dm3.chr3R	10,385,760 – 10,385,863	- - - - - - - -	13733	10,385,760 – 10,385,863	+	9	111	64.97	-2.22	0.36	0.987752
9994	dm3.chr3R	10,393,776 – 10,393,866	- - - - - - - -	13735	10,393,776 – 10,393,866	+	7	97	66.92	-0.74	0.66	0.920093
9997	dm3.chr3R	10,425,579 – 10,425,670	- - - intron="intron;ID=intron_FBgn0020299:7_FBgn0020299:8;Name=stumps-in;Parent=FBtr0082959;parent_type=mRNA" - - - -	13738	10,425,579 – 10,425,670	+	7	102	58.97	-1.77	0.32	0.935519
9998	dm3.chr3R	10,452,471 – 10,452,563	- - - - - - - -	13740	10,452,471 – 10,452,563	-	7	95	68.29	-1.57	0.46	0.956078
9999	dm3.chr3R	10,459,560 – 10,459,650	- - - intron="intron;ID=intron_FBgn0038248:8_FBgn0038248:7;Name=CG7886-in;Parent=FBtr0082976;parent_type=mRNA" - - - -	13741	10,459,560 – 10,459,650	+	8	112	66.12	-2.07	0.35	0.902482
10001	dm3.chr3R	10,471,212 – 10,471,330	- - CDS="CDS;ID=CDS_FBgn0086686:4_238;Name=l(3)L1231-cds;Parent=FBtr0304677;parent_type=mRNA" - - - - -	13744	10,471,212 – 10,471,330	+	13	121	73.42	-1.69	0.47	0.957752
10001	dm3.chr3R	10,471,212 – 10,471,330		13745	10,471,212 – 10,471,330	-	13	121	73.42	-1.65	0.56	0.987293
10002	dm3.chr3R	10,474,368 – 10,474,425	- - - intron="intron;ID=intron_FBgn0086686:6_FBgn0086686:5;Name=l(3)L1231-in;Parent=FBtr0082975,FBtr0304677,FBtr0304678;parent_type=mRNA" - - - -	13746	10,474,368 – 10,474,425	+	5	57	80.04	-2.38	0.83	0.992785
10002	dm3.chr3R	10,474,368 – 10,474,425		13747	10,474,368 – 10,474,425	-	5	57	80.04	-2.02	0.69	0.939492
10003	dm3.chr3R	10,482,787 – 10,482,863	- - - - - - - -	13748	10,482,787 – 10,482,863	+	3	87	77.20	-2.56	0.91	0.995108
10004	dm3.chr3R	10,496,466 – 10,496,567	- - CDS="CDS;ID=CDS_FBgn0051314:5_94;Name=Neu3-cds;Parent=FBtr0301499;parent_type=mRNA" - - - - -	13750	10,496,466 – 10,496,567	+	5	114	59.64	-1.82	0.58	0.998275
10004	dm3.chr3R	10,496,466 – 10,496,567		13751	10,496,466 – 10,496,567	-	5	114	59.64	-1.63	0.37	0.904872
10006	dm3.chr3R	10,511,870 – 10,511,984	- - - intron="intron;ID=intron_FBgn0051314:9_FBgn0051314:8;Name=Neu3-in;Parent=FBtr0301498,FBtr0301499;parent_type=mRNA" - - - -	13753	10,511,870 – 10,511,984	+	6	116	63.31	-1.11	0.48	0.905004
10007	dm3.chr3R	10,514,379 – 10,514,483	- - - intron="intron;ID=intron_FBgn0051314:9_FBgn0051314:8;Name=Neu3-in;Parent=FBtr0301498,FBtr0301499;parent_type=mRNA" - - - -	13754	10,514,379 – 10,514,483	+	6	107	73.40	-1.48	0.61	0.928168
10015	dm3.chr3R	10,569,533 – 10,569,593	- - - intron="intron;ID=intron_FBgn0262718:1_FBgn0262718:6;Name=CG43162-in;Parent=FBtr0305690,FBtr0305692,FBtr0305694;parent_type=mRNA" - - - -	13764	10,569,533 – 10,569,593	+	6	60	77.33	-2.92	0.86	0.998666
10015	dm3.chr3R	10,569,533 – 10,569,593		13765	10,569,533 – 10,569,593	-	6	60	77.33	-3.55	0.87	0.999294
10016	dm3.chr3R	10,580,700 – 10,580,797	- - - intron="intron;ID=intron_CG7362:2_CG7362:3;Name=CG7362-in;Parent=FBtr0083015;parent_type=mRNA" - - - -	13766	10,580,700 – 10,580,791	+	5	106	77.73	-2.08	0.72	0.968057
10016	dm3.chr3R	10,580,700 – 10,580,797		13767	10,580,706 – 10,580,797	+	5	106	78.14	-1.63	0.79	0.927387
10023	dm3.chr3R	10,667,981 – 10,668,082	- - - intron="intron;ID=intron_FBgn0053555:20_FBgn0053555:18;Name=btsz-in;Parent=FBtr0091530,FBtr0273200;parent_type=mRNA" - - - -	13774	10,667,981 – 10,668,082	+	6	111	63.44	-2.89	0.33	0.996012
10023	dm3.chr3R	10,667,981 – 10,668,082		13775	10,667,981 – 10,668,082	-	6	111	63.44	-2.42	0.41	0.996252
10025	dm3.chr3R	10,675,016 – 10,675,122	- - - intron="intron;ID=intron_FBgn0053555:20_FBgn0053555:18;Name=btsz-in;Parent=FBtr0091530,FBtr0273200;parent_type=mRNA" - - - -	13777	10,675,016 – 10,675,122	+	8	107	78.97	-2.69	0.51	0.972548
10025	dm3.chr3R	10,675,016 – 10,675,122		13778	10,675,016 – 10,675,122	-	8	107	78.97	-2.79	0.68	0.996375
10032	dm3.chr3R	10,693,276 – 10,693,328	- - - - - - - -	13785	10,693,276 – 10,693,328	-	7	59	80.26	-2.06	0.70	0.938431
10036	dm3.chr3R	10,728,288 – 10,728,392	- - - - - - - -	13790	10,728,288 – 10,728,392	+	11	117	66.72	-3.05	0.36	0.998734
10036	dm3.chr3R	10,728,288 – 10,728,392	- - - - - - - -	13791	10,728,288 – 10,728,392	-	11	117	66.72	-3.75	0.47	0.999943
10037	dm3.chr3R	10,730,079 – 10,730,154	- - - - - - - -	13792	10,730,079 – 10,730,154	+	5	76	73.58	-1.73	0.56	0.909307
10039	dm3.chr3R	10,774,755 – 10,774,811	- - - - - - - -	13795	10,774,755 – 10,774,811	+	5	56	98.57	-2.04	0.95	0.935528
10041	dm3.chr3R	10,791,421 – 10,791,500	- - - - - - - -	13797	10,791,421 – 10,791,500	+	7	83	79.74	-2.78	0.59	0.991631
10043	dm3.chr3R	10,813,775 – 10,813,870	- - - - - - - -	13799	10,813,775 – 10,813,868	-	12	100	59.74	-0.34	0.69	0.979690
10043	dm3.chr3R	10,813,775 – 10,813,870	- - - - - - - -	13800	10,813,777 – 10,813,870	-	12	103	59.54	-0.69	0.64	0.988364
10044	dm3.chr3R	10,816,285 – 10,816,389	- - - - - - - -	13801	10,816,285 – 10,816,389	+	8	121	70.52	-2.23	0.41	0.933727
10044	dm3.chr3R	10,816,285 – 10,816,389	- - - - - - - -	13802	10,816,285 – 10,816,389	-	8	121	70.52	-4.24	0.47	0.999859
10045	dm3.chr3R	10,816,811 – 10,816,901	- - - - - - - -	13803	10,816,811 – 10,816,901	+	6	97	75.67	-2.60	0.44	0.957924
10047	dm3.chr3R	10,832,795 – 10,832,917	- - - - - - - -	13809	10,832,795 – 10,832,894	-	11	110	76.09	-1.56	0.70	0.978343
10047	dm3.chr3R	10,832,795 – 10,832,917	- - - - - - - -	13810	10,832,823 – 10,832,917	-	11	105	83.10	-1.82	0.84	0.967725
10053	dm3.chr3R	10,879,417 – 10,879,502	- - - - - - - -	13819	10,879,417 – 10,879,502	-	7	87	63.75	-1.69	0.41	0.981204
10057	dm3.chr3R	10,912,980 – 10,913,104	- - - intron="intron;ID=intron_FBgn0038286:5_FBgn0038286:4;Name=CG6966-in;Parent=FBtr0113236;parent_type=mRNA" - - - -	13825	10,912,980 – 10,913,079	+	4	104	76.53	-3.19	0.62	0.995745
				13826	10,913,008 – 10,913,104	+	7	111	71.37	-2.32	0.65	0.995843
				13827	10,913,008 – 10,913,104	-	7	111	71.37	-2.61	0.59	0.997063
10059	dm3.chr3R	10,921,457 – 10,921,589	- - - - - - - -	13829	10,921,457 – 10,921,589	+	5	159	62.49	-3.22	0.54	0.999868
10059	dm3.chr3R	10,921,457 – 10,921,589	- - - - - - - -	13830	10,921,457 – 10,921,589	-	5	159	62.49	-3.84	0.35	0.999674
10062	dm3.chr3R	10,961,138 – 10,961,189	- - - intron="intron;ID=intron_FBgn0038290:2_FBgn0038290:1;Name=CG6912-in;Parent=FBtr0083038;parent_type=mRNA" - - - -	13833	10,961,138 – 10,961,189	-	3	51	96.08	-2.16	1.00	0.984286
10064	dm3.chr3R	10,975,315 – 10,975,410	- - - - - - - -	13835	10,975,315 – 10,975,410	+	10	114	67.66	-1.28	0.56	0.974354
10068	dm3.chr3R	11,005,915 – 11,006,029	- - - - - - - -	13840	11,005,915 – 11,006,029	-	12	120	89.79	-3.19	0.74	0.991190
10069	dm3.chr3R	11,025,033 – 11,025,192	- - CDS="CDS;ID=CDS_FBgn0260659:5_206;Name=CG42542-cds;Parent=FBtr0302324;parent_type=mRNA" - - - - -	13841	11,025,033 – 11,025,192	+	15	176	80.81	-3.47	0.39	0.990331
10069	dm3.chr3R	11,025,033 – 11,025,192		13842	11,025,033 – 11,025,192	-	15	176	80.81	-3.04	0.34	0.910997
10071	dm3.chr3R	11,069,044 – 11,069,142	- - - intron="intron;ID=intron_FBgn0001219:4_FBgn0001219:7;Name=Hsc70-4-in;Parent=FBtr0083059;parent_type=mRNA" - - - -	13844	11,069,044 – 11,069,142	-	7	101	60.66	-1.68	0.36	0.958206
10073	dm3.chr3R	11,076,595 – 11,076,724	- - - intron="intron;ID=intron_FBgn0259823:1_FBgn0259823:2;Name=CG42404-in;Parent=FBtr0305613,FBtr0305614;parent_type=mRNA" - - - -	13846	11,076,595 – 11,076,724	-	6	129	84.57	-2.67	0.62	0.954796
10074	dm3.chr3R	11,112,855 – 11,112,945	- - - intron="intron;ID=intron_FBgn0003721:7_FBgn0003721:10;Name=Tm1-in;Parent=FBtr0089963;parent_type=mRNA" - - - -	13847	11,112,855 – 11,112,945	+	7	99	71.47	-2.49	0.57	0.997383
10074	dm3.chr3R	11,112,855 – 11,112,945		13848	11,112,855 – 11,112,945	-	7	99	71.47	-1.45	0.55	0.901571
10075	dm3.chr3R	11,119,147 – 11,119,246	- - - intron="intron;ID=intron_FBgn0003721:13_FBgn0003721:14;Name=Tm1-in;Parent=FBtr0089960,FBtr0305656;parent_type=mRNA" - - - -	13849	11,119,147 – 11,119,241	+	8	94	78.92	-2.50	0.52	0.974128
10075	dm3.chr3R	11,119,147 – 11,119,246		13850	11,119,152 – 11,119,246	+	8	95	76.23	-2.72	0.49	0.991057
10076	dm3.chr3R	11,119,925 – 11,120,081	- - - intron="intron;ID=intron_FBgn0003721:13_FBgn0003721:14;Name=Tm1-in;Parent=FBtr0089960,FBtr0305656;parent_type=mRNA" - - - -	13851	11,119,925 – 11,120,021	+	5	103	62.82	-1.12	0.50	0.905004
10076	dm3.chr3R	11,119,925 – 11,120,081		13852	11,119,925 – 11,120,021	-	5	103	62.82	-1.46	0.51	0.975036
10078	dm3.chr3R	11,122,307 – 11,122,435	- - CDS="CDS;ID=CDS_FBgn0003721:18_170;Name=Tm1-cds;Parent=FBtr0089961;parent_type=mRNA" intron="intron;ID=intron_FBgn0003721:16_FBgn0003721:20;Name=Tm1-in;Parent=FBtr0089968,FBtr0089960,FBtr0301960,FBtr0305656;parent_type=mRNA" - - - -	13856	11,122,307 – 11,122,435	-	15	138	90.84	-2.18	0.78	0.900410
10081	dm3.chr3R	11,184,035 – 11,184,129	- - - intron="intron;ID=intron_CG5044:4_CG5044:3;Name=CG5044-in;Parent=FBtr0083091;parent_type=mRNA" - - - -	13859	11,184,035 – 11,184,129	+	11	114	62.36	-2.35	0.37	0.996121
10082	dm3.chr3R	11,200,372 – 11,200,476	- - - - - - - -	13860	11,200,372 – 11,200,476	+	10	112	78.21	-3.53	0.73	0.999433
10083	dm3.chr3R	11,206,873 – 11,206,970	- - CDS="CDS;ID=CDS_FBgn0262483:2_153;Name=CG43073-cds;Parent=FBtr0304826,FBtr0304827;parent_type=mRNA" - - - - -	13862	11,206,873 – 11,206,970	+	12	112	84.68	-1.83	0.83	0.951034
10085	dm3.chr3R	11,213,733 – 11,213,853	- - CDS="CDS;ID=CDS_FBgn0262483:16_238;Name=CG43073-cds;Parent=FBtr0304823,FBtr0304824;parent_type=mRNA" - - - - -	13865	11,213,733 – 11,213,853	+	13	120	86.40	-2.35	0.74	0.976545
10089	dm3.chr3R	11,225,156 – 11,225,270	- - - - - - - -	13872	11,225,156 – 11,225,270	-	12	114	94.75	-2.29	0.89	0.951999
10091	dm3.chr3R	11,243,122 – 11,243,222	FBnoncoding="pre_miRNA;ID=FBtr0304169;Name=mir-13b-1-RM;Parent=FBgn0262367;Alias=CR42878-RM;Dbxref=FlyBase_Annotation_IDs:CR42878-RM,miRBase:MI0000134" - - - "Rfam_10.0=RF00047;mir-2;AASW01010650.1/86-152\|1.1e-28" "Noncode_2.0=n178676_u177774_NW_045688_miRNA_Anopheles\|8.1e-08" "unique_Noncode_2.0=u177774_miRNA_Anopheles\|7.1e-08" "mirBase_v16=dme-mir-13b-1\|2.1e-33"	13874	11,243,122 – 11,243,222	+	13	114	77.75	-2.38	0.50	0.980230
10091	dm3.chr3R	11,243,122 – 11,243,222		13875	11,243,122 – 11,243,222	-	13	114	77.75	-3.17	0.63	0.999377
10094	dm3.chr3R	11,255,888 – 11,255,996	- - - - - - - -	13878	11,255,888 – 11,255,996	-	8	117	69.80	-3.20	0.20	0.913436
10096	dm3.chr3R	11,269,620 – 11,269,763	- - CDS="CDS;ID=CDS_CG14869:16_89;Name=CG14869-cds;Parent=FBtr0083160;parent_type=mRNA" - - - - -	13881	11,269,646 – 11,269,763	+	7	117	72.36	-1.76	0.48	0.940214
10097	dm3.chr3R	11,271,972 – 11,272,074	- - - intron="intron;ID=intron_CG14869:9_CG14869:10;Name=CG14869-in;Parent=FBtr0083160,FBtr0083159;parent_type=mRNA" - - - -	13882	11,271,972 – 11,272,074	+	6	102	64.79	-1.30	0.45	0.935896
10100	dm3.chr3R	11,302,251 – 11,302,343	- - - - - - - -	13888	11,302,251 – 11,302,343	+	5	100	61.73	-1.26	0.51	0.947175
10103	dm3.chr3R	11,314,730 – 11,314,825	- - - intron="intron;ID=intron_CG5205:3_CG5205:4;Name=CG5205-in;Parent=FBtr0083147;parent_type=mRNA" - - - -	13892	11,314,730 – 11,314,825	+	11	108	59.58	-0.86	0.43	0.923883
10105	dm3.chr3R	11,321,769 – 11,321,898	- - - - - - - -	13894	11,321,769 – 11,321,870	+	12	118	79.55	-1.77	0.70	0.951641
				13895	11,321,794 – 11,321,892	+	12	114	82.12	-2.15	0.60	0.918645
				13898	11,321,800 – 11,321,898	-	12	114	81.84	-2.34	0.54	0.919182
10106	dm3.chr3R	11,323,863 – 11,323,957	- - - - - - - -	13899	11,323,863 – 11,323,957	+	6	103	69.95	-1.83	0.56	0.976785
10108	dm3.chr3R	11,338,209 – 11,338,306	- - - - - - - -	13901	11,338,209 – 11,338,306	+	8	105	79.13	-2.25	0.57	0.936546
10110	dm3.chr3R	11,343,339 – 11,343,430	- - - - - - - -	13905	11,343,339 – 11,343,430	-	5	95	73.54	-1.72	0.66	0.946889
10114	dm3.chr3R	11,383,185 – 11,383,291	- - - - - - - -	13909	11,383,185 – 11,383,291	+	12	119	70.35	-1.98	0.48	0.986576
10121	dm3.chr3R	11,424,380 – 11,424,476	- - - - - - - -	13917	11,424,380 – 11,424,476	+	11	102	74.44	-2.05	0.57	0.982376
10122	dm3.chr3R	11,427,029 – 11,427,090	- - - - - - - -	13920	11,427,029 – 11,427,090	-	3	65	65.96	-3.51	0.63	0.999518
10123	dm3.chr3R	11,434,094 – 11,434,150	- - - - - - - -	13921	11,434,094 – 11,434,150	+	6	57	66.87	-0.87	0.70	0.966703
10123	dm3.chr3R	11,434,094 – 11,434,150	- - - - - - - -	13922	11,434,094 – 11,434,150	-	6	57	66.87	-0.84	0.76	0.972065
10125	dm3.chr3R	11,453,078 – 11,453,199	- - - - - - - -	13925	11,453,108 – 11,453,199	+	9	93	72.87	-2.07	0.93	0.995440
10128	dm3.chr3R	11,476,417 – 11,476,508	- - - - - - - -	13928	11,476,417 – 11,476,508	+	12	109	66.89	-2.24	0.67	0.999402
10129	dm3.chr3R	11,481,191 – 11,481,308	- - - - - - - -	13930	11,481,191 – 11,481,308	-	6	123	73.06	-2.48	0.63	0.995486
10130	dm3.chr3R	11,481,498 – 11,481,588	- - - - - - - -	13931	11,481,498 – 11,481,588	-	7	94	80.17	-2.76	0.42	0.903666
10131	dm3.chr3R	11,506,531 – 11,506,589	- - - intron="intron;ID=intron_CG33207:3_CG33207:4;Name=pxb-in;Parent=FBtr0083162;parent_type=mRNA" - - - -	13932	11,506,531 – 11,506,589	+	7	67	73.75	-2.02	0.71	0.991875
10132	dm3.chr3R	11,508,141 – 11,508,241	- - - intron="intron;ID=intron_CG33207:3_CG33207:4;Name=pxb-in;Parent=FBtr0083162;parent_type=mRNA" - - - -	13934	11,508,141 – 11,508,241	+	5	100	84.50	-2.26	0.73	0.941660
10136	dm3.chr3R	11,544,903 – 11,544,965	- - - - - - - -	13939	11,544,903 – 11,544,965	-	6	62	63.15	-1.59	0.52	0.995320
10139	dm3.chr3R	11,551,194 – 11,551,288	- - - - - - - -	13942	11,551,194 – 11,551,288	+	6	101	90.16	-2.18	0.81	0.903199
10140	dm3.chr3R	11,578,065 – 11,578,188	- - - - - - - -	13943	11,578,065 – 11,578,163	+	5	101	84.25	-3.20	0.84	0.997779
10143	dm3.chr3R	11,590,629 – 11,590,722	- - - - - - - -	13949	11,590,629 – 11,590,722	+	8	106	77.75	-2.97	0.51	0.993442
10147	dm3.chr3R	11,682,840 – 11,682,930	- - - intron="intron;ID=intron_CG4225:1_CG4225:2;Name=Hmt-1-in;Parent=FBtr0083188;parent_type=mRNA" - - - -	13954	11,682,840 – 11,682,930	-	7	114	58.36	-1.63	0.36	0.940042
10148	dm3.chr3R	11,690,652 – 11,690,738	- - - intron="intron;ID=intron_CG31183:2_CG31183:3;Name=CG31183-in;Parent=FBtr0083187;parent_type=mRNA" - - - -	13955	11,690,652 – 11,690,738	+	6	87	64.53	-1.26	0.49	0.943325
10151	dm3.chr3R	11,709,583 – 11,709,777	- - - - - - - -	13961	11,709,687 – 11,709,777	-	5	101	89.68	-2.28	0.88	0.967305
10154	dm3.chr3R	11,751,827 – 11,751,920	- - - intron="intron;ID=intron_CG4221:1_CG4221:2;Name=CG4221-in;Parent=FBtr0083201;parent_type=mRNA" - - - -	13967	11,751,827 – 11,751,920	-	7	99	67.16	-1.95	0.50	0.988006
10156	dm3.chr3R	11,771,375 – 11,771,474	- - - intron="intron;ID=intron_FBgn0013334:8_FBgn0013334:9;Name=Sap47-in;Parent=FBtr0083204,FBtr0083205,FBtr0083206,FBtr0083207,FBtr0083208;parent_type=mRNA" - - - -	13969	11,771,375 – 11,771,474	+	7	110	64.34	-2.06	0.36	0.965846
10157	dm3.chr3R	11,774,561 – 11,774,619	- - - intron="intron;ID=intron_FBgn0013334:8_FBgn0013334:9;Name=Sap47-in;Parent=FBtr0083204,FBtr0083205,FBtr0083206,FBtr0083207,FBtr0083208;parent_type=mRNA" - - - -	13970	11,774,561 – 11,774,619	-	4	59	67.42	-1.43	0.62	0.952892
10168	dm3.chr3R	11,862,274 – 11,862,367	- - - intron="intron;ID=intron_CG3978:5_CG3978:2;Name=pnr-in;Parent=FBtr0083221;parent_type=mRNA" - - - -	13982	11,862,274 – 11,862,367	+	12	112	70.44	-1.51	0.52	0.935464
10171	dm3.chr3R	11,890,450 – 11,890,549	- - - intron="intron;ID=intron_CG10185:6_CG10185:7;Name=CG10185-in;Parent=FBtr0083235;parent_type=mRNA" - - - -	13985	11,890,450 – 11,890,549	+	13	112	59.24	-2.44	0.21	0.980269
10177	dm3.chr3R	11,936,420 – 11,936,510	- - - - - - - -	13992	11,936,420 – 11,936,510	-	6	92	75.80	-1.17	0.82	0.934239
10179	dm3.chr3R	11,936,863 – 11,936,955	- - - - - - - -	13994	11,936,863 – 11,936,955	-	11	114	73.78	-2.00	0.60	0.989471
10180	dm3.chr3R	11,946,250 – 11,946,358	- - - - - - - -	13996	11,946,250 – 11,946,358	-	5	108	98.06	-2.82	0.96	0.991456
10181	dm3.chr3R	11,950,663 – 11,950,718	- - - - - - - -	13997	11,950,663 – 11,950,718	-	4	55	95.45	-1.39	1.01	0.922769
10183	dm3.chr3R	11,957,599 – 11,957,707	- - - intron="intron;ID=intron_CG4316:1_CG4316:2;Name=Sb-in;Parent=FBtr0083250;parent_type=mRNA" - - - -	13999	11,957,599 – 11,957,707	+	3	114	51.83	-1.66	0.44	0.956419
10187	dm3.chr3R	12,015,325 – 12,015,444	- - - intron="intron;ID=intron_CG6072:1_CG6072:2;Name=sra-in;Parent=FBtr0083255;parent_type=mRNA" - - - -	14004	12,015,325 – 12,015,442	+	3	120	50.99	-1.17	0.57	0.983068
10187	dm3.chr3R	12,015,325 – 12,015,444		14007	12,015,329 – 12,015,444	-	3	120	53.41	-1.15	0.50	0.918195
10188	dm3.chr3R	12,016,756 – 12,016,821	- - - intron="intron;ID=intron_CG6072:1_CG6072:2;Name=sra-in;Parent=FBtr0083255;parent_type=mRNA" - - - -	14008	12,016,756 – 12,016,821	+	7	66	71.27	-2.24	0.39	0.960268
10191	dm3.chr3R	12,037,213 – 12,037,367	- - - - - - - -	14013	12,037,213 – 12,037,311	-	5	99	74.59	-2.28	0.55	0.979055
10191	dm3.chr3R	12,037,213 – 12,037,367	- - - - - - - -	14015	12,037,277 – 12,037,367	-	6	91	76.83	-2.79	0.60	0.996462
10195	dm3.chr3R	12,057,719 – 12,057,877	- - - intron="intron;ID=intron_CG6889:1_CG6889:2;Name=tara-in;Parent=FBtr0083257;parent_type=mRNA" - - - -	14019	12,057,719 – 12,057,809	+	3	90	87.31	-3.49	0.87	0.997466
				14020	12,057,756 – 12,057,846	+	3	90	81.25	-3.41	0.93	0.998490
				14021	12,057,756 – 12,057,846	-	3	90	81.25	-2.84	0.78	0.989515
10197	dm3.chr3R	12,073,753 – 12,073,804	- - - intron="intron;ID=intron_CG6889:3_CG6889:4;Name=tara-in;Parent=FBtr0083258;parent_type=mRNA" - - - -	14025	12,073,753 – 12,073,804	-	6	62	78.17	-2.02	0.65	0.932742
10198	dm3.chr3R	12,086,656 – 12,086,770	- - - - - - - -	14026	12,086,656 – 12,086,770	-	4	120	76.05	-2.31	0.61	0.963086
10200	dm3.chr3R	12,102,564 – 12,102,736	- - - intron="intron;ID=intron_FBgn0250823:8_FBgn0250823:12;Name=gish-in;Parent=FBtr0100331,FBtr0100333;parent_type=mRNA" - - - -	14030	12,102,633 – 12,102,736	+	3	103	97.09	-2.05	0.93	0.920564
10206	dm3.chr3R	12,142,178 – 12,142,280	- - - intron="intron;ID=intron_FBgn0040271:9_FBgn0040271:8;Name=Sulf1-in;Parent=FBtr0083273;parent_type=mRNA" - - - -	14036	12,142,178 – 12,142,280	+	5	102	94.47	-3.38	0.93	0.996975
10206	dm3.chr3R	12,142,178 – 12,142,280		14037	12,142,178 – 12,142,280	-	5	102	94.47	-4.21	0.87	0.998327
10207	dm3.chr3R	12,147,124 – 12,147,194	FBnoncoding="tRNA;ID=FBtr0083267;Name=tRNA:F2:89BC-RA;Parent=FBgn0011858;Dbxref=FlyBase_Annotation_IDs:CR31586-RA;score_text=Weakly" tRNAscann="Phe_chr3R_trna12" - intron="intron;ID=intron_FBgn0040271:9_FBgn0040271:8;Name=Sulf1-in;Parent=FBtr0083273;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPN01177114.1/5440-5512\|1.0e-24" - - -	14038	12,147,124 – 12,147,194	-	13	70	95.82	-2.06	0.98	0.979581
10208	dm3.chr3R	12,147,388 – 12,147,500	FBnoncoding="tRNA;ID=FBtr0083268;Name=tRNA:V4:89BC-RA;Parent=FBgn0012011;Dbxref=FlyBase_Annotation_IDs:CR31587-RA;score_text=Weakly" tRNAscann="Val_chr3R_trna13" - intron="intron;ID=intron_FBgn0040271:9_FBgn0040271:8;Name=Sulf1-in;Parent=FBtr0083273;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPU01011049.1/77188-77260\|3.2e-32" - - -	14039	12,147,388 – 12,147,482	+	13	108	78.88	-1.63	0.81	0.980298
				14040	12,147,388 – 12,147,482	-	13	108	78.88	-1.55	0.77	0.969353
				14041	12,147,407 – 12,147,500	+	13	109	82.59	-1.79	0.92	0.983683
				14042	12,147,407 – 12,147,500	-	13	109	82.59	-1.59	0.97	0.979141
10215	dm3.chr3R	12,185,023 – 12,185,119	- - - - - - - -	14049	12,185,023 – 12,185,119	+	6	98	73.85	-1.51	0.63	0.945566
10215	dm3.chr3R	12,185,023 – 12,185,119	- - - - - - - -	14050	12,185,023 – 12,185,119	-	6	98	73.85	-2.29	0.60	0.994290
10219	dm3.chr3R	12,208,776 – 12,208,880	- - - intron="intron;ID=intron_FBgn0003513:8_FBgn0003513:7;Name=ss-in;Parent=FBtr0083318,FBtr0306026,FBtr0306027;parent_type=mRNA" - - - -	14054	12,208,776 – 12,208,880	-	11	111	78.55	-3.27	0.28	0.918771
10224	dm3.chr3R	12,257,657 – 12,257,762	FBnoncoding="tRNA;ID=FBtr0083285;Name=tRNA:CR31282-RA;Parent=FBgn0051282;Alias=CR31282-RA;Dbxref=FlyBase_Annotation_IDs:CR31282-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna14" - intron="intron;ID=intron_FBgn0051279:3_FBgn0051279:4;Name=CG31279-in;Parent=FBtr0301433;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAJJ01000411.1/14125-14198\|1.1e-25" - - "mirBase_v16=hsa-mir-3676\|4.5e-16"	14060	12,257,657 – 12,257,762	-	13	114	72.51	-2.21	0.68	0.999360
10225	dm3.chr3R	12,263,492 – 12,263,550	- - - - - - - -	14061	12,263,492 – 12,263,550	+	10	68	66.30	-0.51	0.64	0.935782
10227	dm3.chr3R	12,275,026 – 12,275,179	- - - intron="intron;ID=intron_FBgn0044826:3_FBgn0044826:2;Name=Pak3-in;Parent=FBtr0083312;parent_type=mRNA" - - - -	14063	12,275,026 – 12,275,179	+	5	153	76.00	-3.00	0.36	0.940458
10227	dm3.chr3R	12,275,026 – 12,275,179		14064	12,275,026 – 12,275,179	-	5	153	76.00	-3.39	0.44	0.995235
10228	dm3.chr3R	12,279,559 – 12,279,640	- - - - - - - -	14065	12,279,559 – 12,279,640	-	6	88	71.44	-1.74	0.50	0.914341
10232	dm3.chr3R	12,327,511 – 12,327,567	- - - - - - - -	14069	12,327,511 – 12,327,567	-	6	64	83.30	-3.10	0.87	0.997946
10235	dm3.chr3R	12,332,833 – 12,332,985	- - - intron="intron;ID=intron_FBgn0259244:1_FBgn0259244:2;Name=CG42342-in;Parent=FBtr0299894,FBtr0299895,FBtr0299896,FBtr0299897,FBtr0301062,FBtr0303650,FBtr0303651,FBtr0305004,FBtr0305005,FBtr0305006;parent_type=mRNA" - - - -	14073	12,332,865 – 12,332,985	+	5	120	72.53	-1.96	0.54	0.937023
10236	dm3.chr3R	12,363,300 – 12,363,393	- - - intron="intron;ID=intron_FBgn0259244:2_FBgn0259244:3;Name=CG42342-in;Parent=FBtr0299894,FBtr0299895,FBtr0299896,FBtr0299897,FBtr0301062,FBtr0303650,FBtr0303651,FBtr0305004,FBtr0305005,FBtr0305006;parent_type=mRNA" - - - -	14074	12,363,300 – 12,363,393	+	12	108	72.82	-1.35	0.71	0.976642
10239	dm3.chr3R	12,375,637 – 12,375,745	- - - intron="intron;ID=intron_FBgn0259244:2_FBgn0259244:3;Name=CG42342-in;Parent=FBtr0299894,FBtr0299895,FBtr0299896,FBtr0299897,FBtr0301062,FBtr0303650,FBtr0303651,FBtr0305004,FBtr0305005,FBtr0305006;parent_type=mRNA" - - - -	14078	12,375,637 – 12,375,733	+	8	113	81.53	-2.30	0.91	0.993727
10239	dm3.chr3R	12,375,637 – 12,375,745		14079	12,375,643 – 12,375,745	+	8	115	86.80	-2.55	0.91	0.993206
10241	dm3.chr3R	12,413,000 – 12,413,051	- - - - - - - -	14081	12,413,000 – 12,413,051	-	6	53	79.35	-1.94	0.72	0.965713
10242	dm3.chr3R	12,419,370 – 12,419,516	- - - - - - - -	14082	12,419,370 – 12,419,516	-	4	148	72.77	-2.47	0.59	0.990062
10251	dm3.chr3R	12,490,787 – 12,490,889	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14091	12,490,787 – 12,490,889	+	12	116	71.67	-2.38	0.36	0.959893
10251	dm3.chr3R	12,490,787 – 12,490,889		14092	12,490,787 – 12,490,889	-	12	116	71.67	-2.92	0.38	0.995553
10252	dm3.chr3R	12,491,565 – 12,491,655	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14093	12,491,565 – 12,491,655	+	11	90	95.67	-3.50	0.67	0.962114
10254	dm3.chr3R	12,508,732 – 12,508,858	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14095	12,508,732 – 12,508,830	-	12	113	66.39	-2.56	0.30	0.969832
10255	dm3.chr3R	12,511,492 – 12,511,583	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14098	12,511,492 – 12,511,583	+	12	112	79.37	-2.20	0.51	0.904626
10256	dm3.chr3R	12,512,985 – 12,513,103	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14101	12,512,985 – 12,513,087	-	12	113	77.74	-2.77	0.50	0.991929
10256	dm3.chr3R	12,512,985 – 12,513,103		14102	12,513,010 – 12,513,103	-	11	108	87.22	-2.42	0.83	0.981179
10259	dm3.chr3R	12,525,344 – 12,525,442	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14106	12,525,344 – 12,525,442	-	12	114	90.71	-2.49	0.93	0.990886
10262	dm3.chr3R	12,536,267 – 12,536,389	- - CDS="CDS;ID=CDS_CG10388:3_43;Name=Ubx-cds;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - - -	14110	12,536,298 – 12,536,389	-	13	112	65.61	-0.92	0.58	0.977261
10270	dm3.chr3R	12,596,817 – 12,596,915	- - - - - "Noncode_2.0=n4990_u4393_U31961_bxd\|1.3e-49" "unique_Noncode_2.0=u4393_bxd\|1.2e-49" -	14120	12,596,817 – 12,596,915	+	12	117	87.20	-2.74	0.66	0.956360
10273	dm3.chr3R	12,621,903 – 12,621,954	- - - - - - - -	14123	12,621,903 – 12,621,954	+	4	51	92.81	-1.16	1.04	0.934925
10274	dm3.chr3R	12,625,855 – 12,625,949	- - - - - - - -	14124	12,625,855 – 12,625,949	+	10	100	87.04	-1.52	0.89	0.906219
10275	dm3.chr3R	12,642,440 – 12,642,490	- - - intron="intron;ID=intron_FBgn0000014:4_FBgn0000014:3;Name=abd-A-in;Parent=FBtr0083388,FBtr0083387,FBtr0300485,FBtr0306337;parent_type=mRNA" - - - -	14126	12,642,440 – 12,642,490	-	6	60	67.95	-2.90	0.27	0.920409
10278	dm3.chr3R	12,648,469 – 12,648,601	- - - intron="intron;ID=intron_FBgn0000014:5_FBgn0000014:4;Name=abd-A-in;Parent=FBtr0083388,FBtr0083387,FBtr0300485,FBtr0306337;parent_type=mRNA" - - - -	14129	12,648,469 – 12,648,562	-	7	100	73.28	-1.93	0.65	0.987887
10278	dm3.chr3R	12,648,469 – 12,648,601		14131	12,648,489 – 12,648,601	-	6	120	79.04	-1.70	0.74	0.936335
10280	dm3.chr3R	12,655,467 – 12,655,567	- - - - - - - -	14133	12,655,467 – 12,655,567	+	11	109	84.07	-2.83	0.58	0.979289
10280	dm3.chr3R	12,655,467 – 12,655,567	- - - - - - - -	14134	12,655,467 – 12,655,567	-	11	109	84.07	-3.50	0.71	0.998671
10282	dm3.chr3R	12,667,849 – 12,667,946	FBnoncoding="ncRNA;ID=FBtr0306340;Name=msa-RC;Parent=FBgn0262906;Alias=CR43261-RC;Dbxref=FlyBase_Annotation_IDs:CR43261-RC;score_text=Weakly" - - - - - - -	14136	12,667,849 – 12,667,946	+	11	99	82.90	-2.52	0.57	0.938531
10284	dm3.chr3R	12,681,987 – 12,682,089	FBnoncoding="pre_miRNA;ID=FBtr0304422;Name=mir-iab-8-RM;Parent=FBgn0262290;Alias=CR42997-RM;Dbxref=FlyBase_Annotation_IDs:CR42997-RM,miRBase:MI0005805" - - - "Rfam_10.0=RF00725;mir-iab-4;AAPU01010953.1/219687-219770\|7.0e-30" "Noncode_2.0=n4988_u4391_U31961_mRNAlike\|5.8e-52" "unique_Noncode_2.0=u4391_mRNAlike\|5.0e-52" "mirBase_v16=dsi-mir-iab-4-as\|3.8e-41"	14138	12,681,987 – 12,682,089	+	15	114	85.08	-3.45	0.80	0.998753
10284	dm3.chr3R	12,681,987 – 12,682,089		14139	12,681,987 – 12,682,089	-	15	114	85.08	-4.20	0.80	0.999470
10287	dm3.chr3R	12,697,947 – 12,698,038	- - - - - - - -	14142	12,697,947 – 12,698,038	+	8	106	62.70	-1.77	0.33	0.917172
10287	dm3.chr3R	12,697,947 – 12,698,038	- - - - - - - -	14143	12,697,947 – 12,698,038	-	8	106	62.70	-2.28	0.29	0.965810
10288	dm3.chr3R	12,708,505 – 12,708,655	- - - - - - - -	14145	12,708,505 – 12,708,612	-	6	117	76.44	-2.75	0.57	0.993728
				14146	12,708,537 – 12,708,645	+	7	114	71.60	-2.31	0.56	0.993046
				14147	12,708,537 – 12,708,645	-	7	114	71.60	-3.22	0.42	0.997046
10290	dm3.chr3R	12,711,943 – 12,712,041	- - - - - - - -	14151	12,711,943 – 12,712,041	-	5	98	90.71	-1.99	0.87	0.919006
10291	dm3.chr3R	12,728,569 – 12,728,661	- - - - - - - -	14152	12,728,569 – 12,728,661	+	5	100	68.43	-1.94	0.49	0.949184
10292	dm3.chr3R	12,729,121 – 12,729,223	- - - - - - - -	14154	12,729,121 – 12,729,223	-	11	119	65.27	-1.52	0.44	0.952826
10293	dm3.chr3R	12,758,832 – 12,758,946	- - - - - - - -	14155	12,758,832 – 12,758,946	+	13	131	92.68	-2.25	0.84	0.935835
10294	dm3.chr3R	12,762,986 – 12,763,121	- - - intron="intron;ID=intron_CG11648:2_CG11648:3;Name=Abd-B-in;Parent=FBtr0083381,FBtr0083382,FBtr0083383,FBtr0083385;parent_type=mRNA" - - - -	14156	12,762,986 – 12,763,095	+	11	117	84.39	-2.37	0.61	0.917317
10301	dm3.chr3R	12,841,721 – 12,841,827	- - - intron="intron;ID=intron_FBgn0004577:1_FBgn0004577:3;Name=Pxd-in;Parent=FBtr0089287;parent_type=mRNA" - - - -	14166	12,841,721 – 12,841,827	-	4	108	74.96	-2.77	0.50	0.963849
10305	dm3.chr3R	12,882,521 – 12,882,639	- - - intron="intron;ID=intron_CG5201:9_CG5201:3;Name=Dad-in;Parent=FBtr0083394;parent_type=mRNA" - - - -	14170	12,882,521 – 12,882,639	+	5	120	92.67	-3.56	0.93	0.998001
10305	dm3.chr3R	12,882,521 – 12,882,639		14171	12,882,521 – 12,882,639	-	5	120	92.67	-2.92	0.88	0.990337
10311	dm3.chr3R	12,895,895 – 12,896,026	- - - - - - - -	14181	12,895,925 – 12,896,026	+	10	113	57.67	-1.25	0.37	0.954618
10323	dm3.chr3R	13,052,829 – 13,052,923	- - - - - - - -	14193	13,052,829 – 13,052,923	-	4	101	92.82	-2.10	0.94	0.965676
10325	dm3.chr3R	13,063,194 – 13,063,261	- - - intron="intron;ID=intron_FBgn0038494:5_FBgn0038494:1;Name=beat-IIb-in;Parent=FBtr0300610;parent_type=mRNA" - - - -	14196	13,063,194 – 13,063,261	-	12	67	98.71	-1.68	1.00	0.939509
10327	dm3.chr3R	13,081,466 – 13,081,577	- - - - - - - -	14198	13,081,466 – 13,081,577	-	4	111	89.79	-1.81	0.92	0.932844
10329	dm3.chr3R	13,092,530 – 13,092,665	- - - - - - - -	14202	13,092,551 – 13,092,665	-	4	114	69.95	-2.18	0.56	0.978881
10331	dm3.chr3R	13,101,015 – 13,101,105	- - - - - - - -	14204	13,101,015 – 13,101,105	+	6	96	72.24	-2.30	0.45	0.968803
10335	dm3.chr3R	13,139,892 – 13,139,953	- - - - - - - -	14211	13,139,892 – 13,139,953	-	5	61	67.87	-0.76	0.70	0.905890
10337	dm3.chr3R	13,150,841 – 13,151,014	- - - intron="intron;ID=intron_CG14334:5_CG14334:6;Name=beat-IIa-in;Parent=FBtr0083453;parent_type=mRNA" - - - -	14213	13,150,841 – 13,150,937	+	6	103	75.25	-1.97	0.73	0.988912
10337	dm3.chr3R	13,150,841 – 13,151,014		14214	13,150,863 – 13,150,974	+	9	117	76.79	-1.13	0.76	0.914348
10339	dm3.chr3R	13,164,621 – 13,164,731	- - - intron="intron;ID=intron_CG14334:2_CG14334:3;Name=beat-IIa-in;Parent=FBtr0083453;parent_type=mRNA" - - - -	14218	13,164,621 – 13,164,731	-	10	113	63.01	-1.06	0.44	0.903730
10344	dm3.chr3R	13,193,082 – 13,193,210	- - - - - - - -	14224	13,193,082 – 13,193,177	-	4	114	79.97	-3.22	0.66	0.994935
10344	dm3.chr3R	13,193,082 – 13,193,210	- - - - - - - -	14226	13,193,111 – 13,193,210	-	4	113	86.16	-3.47	0.69	0.992994
10346	dm3.chr3R	13,197,817 – 13,197,934	- - - - - - - -	14228	13,197,817 – 13,197,934	-	9	125	81.71	-2.30	0.54	0.906378
10349	dm3.chr3R	13,209,207 – 13,209,314	- - - - - - - -	14232	13,209,207 – 13,209,314	-	6	111	70.90	-1.85	0.49	0.935389
10352	dm3.chr3R	13,240,772 – 13,240,864	- - - - - - - -	14236	13,240,772 – 13,240,864	+	3	111	80.78	-2.02	0.84	0.955314
10356	dm3.chr3R	13,254,641 – 13,254,760	- - - intron="intron;ID=intron_CG5873:1_CG5873:2;Name=CG5873-in;Parent=FBtr0083442;parent_type=mRNA" - - - -	14242	13,254,641 – 13,254,735	-	11	105	68.43	-2.21	0.56	0.998577
10356	dm3.chr3R	13,254,641 – 13,254,760		14243	13,254,664 – 13,254,760	-	12	112	75.56	-2.02	0.53	0.956305
10357	dm3.chr3R	13,259,976 – 13,260,073	- - - intron="intron;ID=intron_CG5873:1_CG5873:2;Name=CG5873-in;Parent=FBtr0083442;parent_type=mRNA" - - - -	14244	13,259,976 – 13,260,073	+	6	97	71.28	-1.42	0.63	0.946714
10365	dm3.chr3R	13,346,245 – 13,346,363	- - - - - - - -	14254	13,346,245 – 13,346,337	-	4	99	68.54	-1.95	0.61	0.981397
10366	dm3.chr3R	13,382,035 – 13,382,126	- - - - - - - -	14256	13,382,035 – 13,382,126	+	7	97	74.27	-2.10	0.82	0.995376
10367	dm3.chr3R	13,393,058 – 13,393,148	- - CDS="CDS;ID=CDS_FBgn0085448:3_102;Name=Hmx-cds;Parent=FBtr0273220;parent_type=mRNA" - - - - -	14257	13,393,058 – 13,393,148	-	6	96	69.19	-2.57	0.38	0.961208
10369	dm3.chr3R	13,424,178 – 13,424,270	- - - - - - - -	14259	13,424,178 – 13,424,270	-	5	92	88.22	-2.79	0.84	0.989070
10370	dm3.chr3R	13,429,541 – 13,429,660	- - - - - - - -	14260	13,429,541 – 13,429,636	+	9	114	55.77	-1.11	0.37	0.909718
10370	dm3.chr3R	13,429,541 – 13,429,660	- - - - - - - -	14262	13,429,566 – 13,429,660	-	9	98	64.46	-1.18	0.43	0.924935
10371	dm3.chr3R	13,443,448 – 13,443,567	FBnoncoding="tRNA;ID=FBtr0083466;Name=tRNA:V3b:90BC-RA;Parent=FBgn0012002;Dbxref=FlyBase_Annotation_IDs:CR31572-RA;score_text=Weakly" tRNAscann="Val_chr3R_trna15" - - "Rfam_10.0=RF00005;tRNA;AC009461.5/117254-117326\|1.4e-34" - - -	14263	13,443,448 – 13,443,567	+	12	121	74.38	-1.01	0.81	0.976016
10371	dm3.chr3R	13,443,448 – 13,443,567		14264	13,443,448 – 13,443,567	-	12	121	74.38	-0.71	0.75	0.930454
10372	dm3.chr3R	13,445,461 – 13,445,556	FBnoncoding="tRNA;ID=FBtr0083468;Name=tRNA:CR31570-RA;Parent=FBgn0051570;Alias=CR31570-RA;Dbxref=FlyBase_Annotation_IDs:CR31570-RA;score_text=Weakly" tRNAscann="Ala_chr3R_trna16" - - "Rfam_10.0=RF00005;tRNA;AAPT01019392.1/11921-11993\|4.1e-31" - - -	14265	13,445,461 – 13,445,556	+	13	100	81.74	-1.06	0.95	0.931210
10372	dm3.chr3R	13,445,461 – 13,445,556		14266	13,445,461 – 13,445,556	-	13	100	81.74	-1.94	0.96	0.991310
10373	dm3.chr3R	13,445,865 – 13,445,950	FBnoncoding="tRNA;ID=FBtr0083499;Name=tRNA:A:90C-RA;Parent=FBgn0011840;Dbxref=FlyBase_Annotation_IDs:CR31574-RA;score_text=Weakly" tRNAscann="Ala_chr3R_trna56" - - "Rfam_10.0=RF00005;tRNA;AAPT01019392.1/11921-11993\|2.3e-32" - - -	14268	13,445,865 – 13,445,950	-	13	85	88.24	-1.79	0.96	0.979574
10374	dm3.chr3R	13,450,287 – 13,450,397	FBnoncoding="tRNA;ID=FBtr0083497;Name=tRNA:T:90Ca-RA;Parent=FBgn0011993;Dbxref=FlyBase_Annotation_IDs:CR31589-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna55" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000411.1/14125-14198\|4.5e-25" - - "mirBase_v16=hsa-mir-3676\|4.8e-16"	14269	13,450,287 – 13,450,397	+	13	111	82.25	-1.29	0.89	0.946809
10375	dm3.chr3R	13,450,526 – 13,450,629	FBnoncoding="tRNA;ID=FBtr0083496;Name=tRNA:T:90Cb-RA;Parent=FBgn0011994;Dbxref=FlyBase_Annotation_IDs:CR31590-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna54" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000411.1/14125-14198\|1.1e-25" - - "mirBase_v16=hsa-mir-3676\|4.4e-16"	14270	13,450,526 – 13,450,629	+	13	110	82.94	-1.43	0.91	0.958467
10376	dm3.chr3R	13,454,808 – 13,454,902	FBnoncoding="tRNA;ID=FBtr0083495;Name=tRNA:V4:90C-RA;Parent=FBgn0051591;Dbxref=FlyBase_Annotation_IDs:CR31591-RA;score_text=Weakly" tRNAscann="Val_chr3R_trna53" - - "Rfam_10.0=RF00005;tRNA;AAPU01011049.1/77188-77260\|1.0e-31" - - -	14271	13,454,808 – 13,454,902	+	12	108	76.64	-1.04	0.86	0.939411
10377	dm3.chr3R	13,457,391 – 13,457,465	FBnoncoding="tRNA;ID=FBtr0083472;Name=tRNA:CR31573-RA;Parent=FBgn0051573;Alias=CR31573-RA;Dbxref=FlyBase_Annotation_IDs:CR31573-RA;score_text=Weakly" tRNAscann="Pro_chr3R_trna19" - - "Rfam_10.0=RF00005;tRNA;BAAF04096440.1/6614-6678\|2.8e-25" - - -	14273	13,457,391 – 13,457,465	-	13	74	89.50	-1.86	0.88	0.953982
10378	dm3.chr3R	13,459,732 – 13,459,824	- - - - - - - -	14274	13,459,732 – 13,459,824	+	5	116	67.77	-1.45	0.68	0.977020
10379	dm3.chr3R	13,471,312 – 13,471,416	FBnoncoding="tRNA;ID=FBtr0083473;Name=tRNA:CR31578-RA;Parent=FBgn0051578;Alias=CR31578-RA;Dbxref=FlyBase_Annotation_IDs:CR31578-RA;score_text=Weakly" tRNAscann="Pro_chr3R_trna20" - - "Rfam_10.0=RF00005;tRNA;AAAB01017465.1/91-162\|2.7e-26" - - -	14275	13,471,312 – 13,471,416	+	12	106	73.25	-0.81	0.93	0.959142
10379	dm3.chr3R	13,471,312 – 13,471,416		14276	13,471,312 – 13,471,416	-	12	106	73.25	-2.15	0.94	0.996935
10382	dm3.chr3R	13,484,100 – 13,484,179	FBnoncoding="tRNA;ID=FBtr0083491;Name=tRNA:CR31575-RA;Parent=FBgn0051575;Alias=CR31575-RA;Dbxref=FlyBase_Annotation_IDs:CR31575-RA;score_text=Weakly" tRNAscann="Ala_chr3R_trna49" - intron="intron;ID=intron_FBgn0038532:1_FBgn0038532:2;Name=CG14322-in;Parent=FBtr0083476;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPT01019392.1/11921-11993\|2.1e-32" - - -	14280	13,484,100 – 13,484,179	-	13	81	95.19	-2.77	0.99	0.995987
10383	dm3.chr3R	13,484,686 – 13,484,811	- - - intron="intron;ID=intron_FBgn0038532:1_FBgn0038532:2;Name=CG14322-in;Parent=FBtr0083476;parent_type=mRNA" - - - -	14281	13,484,686 – 13,484,783	+	5	97	91.86	-2.53	0.81	0.946128
10383	dm3.chr3R	13,484,686 – 13,484,811		14282	13,484,721 – 13,484,811	+	9	108	66.46	-2.58	0.33	0.985393
10385	dm3.chr3R	13,493,888 – 13,493,984	FBnoncoding="tRNA;ID=FBtr0083477;Name=tRNA:CR31576-RA;Parent=FBgn0051576;Alias=CR31576-RA;Dbxref=FlyBase_Annotation_IDs:CR31576-RA;score_text=Weakly" tRNAscann="Ala_chr3R_trna23" - intron="intron;ID=intron_FBgn0038532:4_FBgn0038532:5;Name=CG14322-in;Parent=FBtr0083476;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPT01019392.1/11921-11993\|2.7e-32" - - -	14284	13,493,888 – 13,493,984	+	13	111	82.71	-1.50	0.94	0.968454
10386	dm3.chr3R	13,520,920 – 13,521,020	- - CDS="CDS;ID=CDS_FBgn0003013:5_2;Name=osa-cds;Parent=FBtr0301487;parent_type=mRNA" - - - - -	14286	13,520,920 – 13,521,020	-	8	116	68.46	-1.90	0.45	0.962507
10389	dm3.chr3R	13,541,925 – 13,542,020	- - CDS="CDS;ID=CDS_FBgn0003013:16_87;Name=osa-cds;Parent=FBtr0089583;parent_type=mRNA" - - - - -	14291	13,541,925 – 13,542,020	+	4	95	96.84	-1.65	0.99	0.933219
10392	dm3.chr3R	13,552,204 – 13,552,351	- - - intron="intron;ID=intron_CG7665:1_CG7665:18;Name=Fsh-in;Parent=FBtr0083510;parent_type=mRNA" - - - -	14294	13,552,204 – 13,552,313	-	5	119	77.44	-3.37	0.47	0.994518
10392	dm3.chr3R	13,552,204 – 13,552,351		14295	13,552,236 – 13,552,351	-	5	119	77.82	-3.31	0.59	0.997461
10394	dm3.chr3R	13,561,292 – 13,561,385	- - - - - - - -	14297	13,561,292 – 13,561,385	-	9	120	80.13	-1.95	0.88	0.983350
10396	dm3.chr3R	13,573,148 – 13,573,219	- - - - - - - -	14299	13,573,148 – 13,573,219	+	7	85	70.65	-2.68	0.51	0.997567
10397	dm3.chr3R	13,573,281 – 13,573,341	- - - - - - - -	14301	13,573,281 – 13,573,341	-	6	60	82.56	-2.71	0.63	0.983494
10400	dm3.chr3R	13,580,092 – 13,580,168	- - - intron="intron;ID=intron_CG7431:3_CG7431:4;Name=CG7431-in;Parent=FBtr0083532;parent_type=mRNA" - - - -	14304	13,580,092 – 13,580,168	-	6	76	80.53	-1.95	0.63	0.907371
10407	dm3.chr3R	13,619,674 – 13,619,848	- - - - - - - -	14312	13,619,674 – 13,619,782	+	6	116	83.75	-2.83	0.63	0.980911
				14314	13,619,713 – 13,619,810	+	5	115	86.36	-2.78	0.84	0.990966
				14316	13,619,742 – 13,619,848	+	5	118	90.87	-3.99	0.89	0.998603
10409	dm3.chr3R	13,641,405 – 13,641,476	- - - intron="intron;ID=intron_FBgn0261649:3_FBgn0261649:4;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14319	13,641,405 – 13,641,476	+	5	71	98.87	-2.36	1.01	0.989405
10412	dm3.chr3R	13,647,097 – 13,647,195	- - - intron="intron;ID=intron_FBgn0261649:3_FBgn0261649:4;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14322	13,647,097 – 13,647,195	-	6	98	70.09	-2.70	0.55	0.998132
10413	dm3.chr3R	13,654,709 – 13,654,835	- - - intron="intron;ID=intron_FBgn0261649:3_FBgn0261649:4;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14323	13,654,709 – 13,654,803	+	7	114	70.08	-1.94	0.45	0.939844
10413	dm3.chr3R	13,654,709 – 13,654,835		14324	13,654,733 – 13,654,835	+	7	113	67.14	-2.31	0.59	0.999225
10414	dm3.chr3R	13,660,337 – 13,660,438	- - - intron="intron;ID=intron_FBgn0261649:3_FBgn0261649:4;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14325	13,660,337 – 13,660,438	-	5	102	80.08	-2.32	0.78	0.986856
10416	dm3.chr3R	13,665,613 – 13,665,709	- - - intron="intron;ID=intron_FBgn0261649:4_FBgn0261649:5;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14327	13,665,613 – 13,665,709	+	4	99	46.46	-0.42	0.54	0.939479
10422	dm3.chr3R	13,708,402 – 13,708,544	- - - intron="intron;ID=intron_FBgn0053547:17_FBgn0053547:14;Name=Rim-in;Parent=FBtr0305023;parent_type=mRNA" - - - -	14334	13,708,402 – 13,708,544	-	11	157	77.90	-3.24	0.46	0.995827
10423	dm3.chr3R	13,710,160 – 13,710,255	- - - intron="intron;ID=intron_FBgn0053547:17_FBgn0053547:15;Name=Rim-in;Parent=FBtr0305022;parent_type=mRNA" - - - -	14335	13,710,160 – 13,710,255	+	12	114	67.75	-1.62	0.42	0.953458
10424	dm3.chr3R	13,715,792 – 13,715,901	- - - intron="intron;ID=intron_FBgn0053547:21_FBgn0053547:20;Name=Rim-in;Parent=FBtr0301555,FBtr0305014,FBtr0305015,FBtr0305016,FBtr0305017,FBtr0305018,FBtr0305019,FBtr0305020,FBtr0305021,FBtr0305022,FBtr0305023;parent_type=mRNA" - - - -	14336	13,715,792 – 13,715,901	+	6	110	67.65	-2.44	0.48	0.997393
10424	dm3.chr3R	13,715,792 – 13,715,901		14337	13,715,792 – 13,715,901	-	6	110	67.65	-3.40	0.44	0.999666
10426	dm3.chr3R	13,747,784 – 13,747,896	- - - - - - - -	14340	13,747,784 – 13,747,896	-	4	112	81.90	-2.55	0.67	0.960117
10429	dm3.chr3R	13,758,451 – 13,758,559	- - - intron="intron;ID=intron_FBgn0000363:2_FBgn0000363:3;Name=cpo-in;Parent=FBtr0083535,FBtr0083534,FBtr0300242;parent_type=mRNA" - - - -	14343	13,758,451 – 13,758,552	+	5	119	67.41	-2.33	0.56	0.997563
				14345	13,758,458 – 13,758,559	+	5	118	68.74	-2.46	0.56	0.997908
				14346	13,758,458 – 13,758,559	-	5	118	68.74	-1.66	0.64	0.988361
10430	dm3.chr3R	13,763,664 – 13,763,765	- - - intron="intron;ID=intron_FBgn0000363:3_FBgn0000363:8;Name=cpo-in;Parent=FBtr0083535,FBtr0083534,FBtr0100377,FBtr0300242;parent_type=mRNA" - - - -	14347	13,763,664 – 13,763,765	-	6	110	63.84	-2.21	0.44	0.997064
10432	dm3.chr3R	13,768,294 – 13,768,424	- - - intron="intron;ID=intron_FBgn0000363:3_FBgn0000363:8;Name=cpo-in;Parent=FBtr0083535,FBtr0083534,FBtr0100377,FBtr0300242;parent_type=mRNA" - - - -	14350	13,768,317 – 13,768,424	-	6	120	74.65	-1.66	0.65	0.944892
10433	dm3.chr3R	13,768,714 – 13,768,808	- - - intron="intron;ID=intron_FBgn0000363:3_FBgn0000363:8;Name=cpo-in;Parent=FBtr0083535,FBtr0083534,FBtr0100377,FBtr0300242;parent_type=mRNA" - - - -	14351	13,768,714 – 13,768,808	+	6	106	77.36	-1.93	0.73	0.963666
10435	dm3.chr3R	13,775,036 – 13,775,115	- - - intron="intron;ID=intron_FBgn0259934:3_FBgn0259934:4;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14353	13,775,036 – 13,775,115	-	7	80	72.78	-2.54	0.32	0.913082
10437	dm3.chr3R	13,776,822 – 13,776,881	- - - intron="intron;ID=intron_FBgn0259934:3_FBgn0259934:4;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14355	13,776,822 – 13,776,881	+	4	72	75.57	-1.50	0.89	0.948641
10440	dm3.chr3R	13,781,915 – 13,782,009	- - - intron="intron;ID=intron_FBgn0259934:3_FBgn0259934:4;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14359	13,781,915 – 13,782,009	-	5	94	93.76	-2.92	0.91	0.991928
10444	dm3.chr3R	13,823,232 – 13,823,342	- - - intron="intron;ID=intron_FBgn0259934:4_FBgn0259934:5;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14363	13,823,232 – 13,823,326	+	11	120	75.70	-1.62	0.61	0.918989
10444	dm3.chr3R	13,823,232 – 13,823,342		14364	13,823,241 – 13,823,342	+	11	118	75.72	-1.85	0.58	0.973576
10445	dm3.chr3R	13,823,383 – 13,823,436	- - - intron="intron;ID=intron_FBgn0259934:4_FBgn0259934:5;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14366	13,823,383 – 13,823,436	-	5	53	90.94	-1.71	1.03	0.983229
10448	dm3.chr3R	13,850,808 – 13,850,975	- - CDS="CDS;ID=CDS_CG7794:3_34;Name=CG7794-cds;Parent=FBtr0083540;parent_type=mRNA" - - - - -	14369	13,850,808 – 13,850,928	+	15	121	75.53	-2.06	0.47	0.956957
10452	dm3.chr3R	13,857,796 – 13,857,900	- - - - - - - -	14376	13,857,796 – 13,857,900	-	8	107	87.04	-1.89	0.84	0.932144
10457	dm3.chr3R	13,897,284 – 13,897,452	- - - - - - - -	14383	13,897,284 – 13,897,395	-	12	119	89.11	-2.64	0.64	0.905150
				14385	13,897,355 – 13,897,452	+	9	119	61.22	-1.94	0.39	0.989625
				14386	13,897,355 – 13,897,452	-	9	119	61.22	-1.75	0.37	0.968005
10462	dm3.chr3R	13,934,351 – 13,934,433	FBnoncoding="tRNA;ID=FBtr0083544;Name=tRNA:CR31242-RA;Parent=FBgn0051242;Alias=CR31242-RA;Dbxref=FlyBase_Annotation_IDs:CR31242-RA;score_text=Weakly" tRNAscann="Gly_chr3R_trna24" - intron="intron;ID=intron_FBgn0003499:3_FBgn0003499:6;Name=sr-in;Parent=FBtr0083542;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010436523.1/406-477\|5.1e-27" - - -	14392	13,934,351 – 13,934,433	+	13	96	83.34	-1.61	0.92	0.967175
10462	dm3.chr3R	13,934,351 – 13,934,433		14393	13,934,351 – 13,934,433	-	13	96	83.34	-2.56	0.87	0.995474
10463	dm3.chr3R	13,934,711 – 13,934,802	FBnoncoding="tRNA;ID=FBtr0083545;Name=tRNA:CR31518-RA;Parent=FBgn0051518;Alias=CR31518-RA;Dbxref=FlyBase_Annotation_IDs:CR31518-RA;score_text=Weakly" tRNAscann="Gly_chr3R_trna25" - intron="intron;ID=intron_FBgn0003499:3_FBgn0003499:6;Name=sr-in;Parent=FBtr0083542;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010436523.1/406-477\|5.8e-27" - - -	14394	13,934,711 – 13,934,802	+	11	107	74.08	-1.49	0.87	0.989556
10463	dm3.chr3R	13,934,711 – 13,934,802		14395	13,934,711 – 13,934,802	-	11	107	74.08	-2.54	0.78	0.999091
10464	dm3.chr3R	13,937,347 – 13,937,402	- - - intron="intron;ID=intron_FBgn0003499:3_FBgn0003499:6;Name=sr-in;Parent=FBtr0083542;parent_type=mRNA" - - - -	14396	13,937,347 – 13,937,402	+	8	65	65.87	-2.90	0.40	0.998622
10464	dm3.chr3R	13,937,347 – 13,937,402		14397	13,937,347 – 13,937,402	-	8	65	65.87	-3.04	0.38	0.998695
10465	dm3.chr3R	13,947,766 – 13,947,856	- - - intron="intron;ID=intron_FBgn0003499:3_FBgn0003499:6;Name=sr-in;Parent=FBtr0083542;parent_type=mRNA" - - - -	14398	13,947,766 – 13,947,856	+	12	99	67.96	-0.47	0.69	0.952419
10467	dm3.chr3R	13,957,530 – 13,957,594	- - CDS="CDS;ID=CDS_FBgn0003499:9_92;Name=sr-cds;Parent=FBtr0301615;parent_type=mRNA" - - - - -	14400	13,957,530 – 13,957,594	+	4	65	70.90	-1.68	0.65	0.941375
10469	dm3.chr3R	13,966,411 – 13,966,524	- - - - - - - -	14403	13,966,411 – 13,966,515	+	9	108	73.03	-2.00	0.45	0.942634
10469	dm3.chr3R	13,966,411 – 13,966,524	- - - - - - - -	14404	13,966,416 – 13,966,524	+	9	112	70.64	-1.74	0.44	0.913484
10479	dm3.chr3R	14,023,561 – 14,023,665	- - - intron="intron;ID=intron_FBgn0011481:4_FBgn0011481:3;Name=Ssdp-in;Parent=FBtr0083611;parent_type=mRNA" - - - -	14415	14,023,561 – 14,023,665	+	5	104	94.62	-2.18	0.88	0.915876
10479	dm3.chr3R	14,023,561 – 14,023,665		14416	14,023,561 – 14,023,665	-	5	104	94.62	-3.30	0.82	0.988588
10483	dm3.chr3R	14,065,009 – 14,065,095	- - - - - - - -	14421	14,065,009 – 14,065,095	+	9	90	54.32	-3.44	0.04	0.980968
10488	dm3.chr3R	14,116,645 – 14,116,737	- - CDS="CDS;ID=CDS_CG7129:2_38;Name=l(3)05822-cds;Parent=FBtr0083595,FBtr0083596;parent_type=mRNA" - - - - -	14428	14,116,645 – 14,116,737	-	11	99	76.07	-2.11	0.67	0.996032
10491	dm3.chr3R	14,142,987 – 14,143,096	- - CDS="CDS;ID=CDS_CG31235:5_18;Name=CG31235-cds;Parent=FBtr0083588;parent_type=mRNA" - - - - -	14431	14,142,987 – 14,143,096	-	5	109	73.58	-1.94	0.51	0.919588
10492	dm3.chr3R	14,149,475 – 14,149,581	- - - intron="intron;ID=intron_CG31235:3_CG31235:4;Name=CG31235-in;Parent=FBtr0083588;parent_type=mRNA" - - - -	14433	14,149,475 – 14,149,581	-	3	106	89.78	-2.37	0.95	0.987366
10493	dm3.chr3R	14,156,304 – 14,156,372	- - - - - - - -	14435	14,156,304 – 14,156,372	-	5	77	68.11	-1.98	0.47	0.962398
10495	dm3.chr3R	14,165,744 – 14,165,869	- - - intron="intron;ID=intron_FBgn0038606:2_FBgn0038606:1;Name=CG15803-in;Parent=FBtr0302308;parent_type=mRNA" - - - -	14437	14,165,744 – 14,165,869	-	12	132	48.66	-2.21	0.16	0.974102
10496	dm3.chr3R	14,166,436 – 14,166,531	- - - intron="intron;ID=intron_FBgn0038606:2_FBgn0038606:1;Name=CG15803-in;Parent=FBtr0302308;parent_type=mRNA" - - - -	14438	14,166,436 – 14,166,531	+	12	110	82.60	-1.68	0.73	0.900770
10498	dm3.chr3R	14,182,771 – 14,182,828	- - - intron="intron;ID=intron_FBgn0038606:4_FBgn0038606:3;Name=CG15803-in;Parent=FBtr0302308;parent_type=mRNA" - - - -	14441	14,182,771 – 14,182,828	+	10	61	70.32	-1.38	0.49	0.922575
10499	dm3.chr3R	14,191,881 – 14,191,941	- - - - - - - -	14443	14,191,881 – 14,191,941	-	4	60	77.44	-2.45	0.62	0.971026
10504	dm3.chr3R	14,259,861 – 14,259,925	- - - intron="intron;ID=intron_FBgn0004652:9_FBgn0004652:8;Name=fru-in;Parent=FBtr0083648,FBtr0083649,FBtr0083650,FBtr0083651,FBtr0083652,FBtr0083640,FBtr0083641,FBtr0083642,FBtr0083643,FBtr0083644,FBtr0083645,FBtr0083646,FBtr0083647,FBtr0301284;parent_type=mRNA" - - - -	14448	14,259,861 – 14,259,925	+	4	64	62.70	-1.16	0.69	0.980349
10505	dm3.chr3R	14,265,538 – 14,265,631	- - - - - - - -	14449	14,265,538 – 14,265,631	-	4	94	67.91	-2.48	0.37	0.934597
10513	dm3.chr3R	14,326,619 – 14,326,688	- - - - - - - -	14459	14,326,619 – 14,326,688	+	6	77	83.10	-1.81	0.92	0.975544
10515	dm3.chr3R	14,339,610 – 14,339,705	- - - - - - - -	14461	14,339,610 – 14,339,705	-	12	110	74.34	-1.36	0.64	0.919107
10516	dm3.chr3R	14,340,844 – 14,341,054	- - CDS="CDS;ID=CDS_FBgn0004652:21_97;Name=fru-cds;Parent=FBtr0301284;parent_type=mRNA" - - - - -	14462	14,340,844 – 14,340,940	+	9	120	72.25	-1.69	0.55	0.918753
10517	dm3.chr3R	14,348,386 – 14,348,486	- - - intron="intron;ID=intron_FBgn0004652:23_FBgn0004652:21;Name=fru-in;Parent=FBtr0301284;parent_type=mRNA" - - - -	14465	14,348,386 – 14,348,486	-	6	100	75.16	-1.20	0.84	0.916961
10518	dm3.chr3R	14,349,751 – 14,349,862	- - - intron="intron;ID=intron_FBgn0004652:23_FBgn0004652:21;Name=fru-in;Parent=FBtr0301284;parent_type=mRNA" - - - -	14466	14,349,751 – 14,349,862	-	5	116	72.21	-1.33	0.85	0.962497
10519	dm3.chr3R	14,353,493 – 14,353,548	- - - intron="intron;ID=intron_FBgn0004652:23_FBgn0004652:21;Name=fru-in;Parent=FBtr0301284;parent_type=mRNA" - - - -	14467	14,353,493 – 14,353,548	+	3	55	98.78	-3.37	1.00	0.997559
10519	dm3.chr3R	14,353,493 – 14,353,548		14468	14,353,493 – 14,353,548	-	3	55	98.78	-4.56	1.00	0.998756
10521	dm3.chr3R	14,384,357 – 14,384,469	- - - - - - - -	14470	14,384,357 – 14,384,469	-	4	113	86.21	-2.90	0.89	0.995553
10522	dm3.chr3R	14,389,623 – 14,389,718	- - - - - - - -	14471	14,389,623 – 14,389,718	+	8	99	79.77	-1.77	0.72	0.959134
10525	dm3.chr3R	14,408,359 – 14,408,450	- - - intron="intron;ID=intron_FBgn0023083:2_FBgn0023083:6;Name=fray-in;Parent=FBtr0083637;parent_type=mRNA" - - - -	14474	14,408,359 – 14,408,450	-	4	91	92.22	-3.51	0.73	0.987474
10526	dm3.chr3R	14,440,521 – 14,440,594	- - - - - - - -	14475	14,440,521 – 14,440,594	-	7	74	78.82	-1.96	0.89	0.988244
10529	dm3.chr3R	14,454,186 – 14,454,276	FBnoncoding="tRNA;ID=FBtr0083693;Name=tRNA:CR31228-RA;Parent=FBgn0051228;Alias=CR31228-RA;Dbxref=FlyBase_Annotation_IDs:CR31228-RA;score_text=Weakly" tRNAscann="Pro_chr3R_trna48" - - "Rfam_10.0=RF00005;tRNA;AAAB01017465.1/91-162\|2.3e-26" - - -	14478	14,454,186 – 14,454,276	+	14	117	81.36	-3.08	0.90	0.998456
10530	dm3.chr3R	14,464,758 – 14,464,899	- - - intron="intron;ID=intron_FBgn0038632:4_FBgn0038632:3;Name=CG14301-in;Parent=FBtr0290199;parent_type=mRNA" - - - -	14480	14,464,758 – 14,464,899	-	6	156	70.37	-1.21	0.71	0.950764
10543	dm3.chr3R	14,593,823 – 14,593,929	- - - intron="intron;ID=intron_FBgn0038652:8_FBgn0038652:7;Name=CG7720-in;Parent=FBtr0083678,FBtr0083679,FBtr0301199,FBtr0301200,FBtr0301201;parent_type=mRNA" - - - -	14496	14,593,823 – 14,593,929	+	10	112	66.64	-1.19	0.46	0.928247
10544	dm3.chr3R	14,608,416 – 14,608,534	- - - intron="intron;ID=intron_FBgn0038652:13_FBgn0038652:10;Name=CG7720-in;Parent=FBtr0301199;parent_type=mRNA" - - - -	14497	14,608,416 – 14,608,534	+	7	119	64.42	-2.12	0.35	0.985271
10544	dm3.chr3R	14,608,416 – 14,608,534		14498	14,608,416 – 14,608,534	-	7	119	64.42	-2.56	0.46	0.999525
10545	dm3.chr3R	14,608,919 – 14,608,975	- - - intron="intron;ID=intron_FBgn0038652:13_FBgn0038652:10;Name=CG7720-in;Parent=FBtr0301199;parent_type=mRNA" - - - -	14499	14,608,919 – 14,608,975	+	3	56	86.83	-2.18	0.94	0.982485
10546	dm3.chr3R	14,616,182 – 14,616,327	- - - intron="intron;ID=intron_FBgn0038652:13_FBgn0038652:10;Name=CG7720-in;Parent=FBtr0301199;parent_type=mRNA" - - - -	14500	14,616,182 – 14,616,295	+	5	119	88.58	-1.49	0.94	0.901948
10546	dm3.chr3R	14,616,182 – 14,616,327		14501	14,616,222 – 14,616,327	+	5	113	86.59	-2.25	0.92	0.985634
10548	dm3.chr3R	14,631,777 – 14,631,871	- - - - - - - -	14503	14,631,777 – 14,631,871	-	14	95	84.98	-2.34	0.74	0.986802
10550	dm3.chr3R	14,656,242 – 14,656,357	- - - intron="intron;ID=intron_FBgn0038653:3_FBgn0038653:2;Name=CG18208-in;Parent=FBtr0083677;parent_type=mRNA" - - - -	14505	14,656,242 – 14,656,332	+	7	108	67.12	-1.42	0.57	0.956622
10550	dm3.chr3R	14,656,242 – 14,656,357		14506	14,656,242 – 14,656,332	-	7	108	67.12	-1.20	0.67	0.967166
10554	dm3.chr3R	14,691,892 – 14,692,022	- - - - - - - -	14511	14,691,892 – 14,692,022	-	5	151	84.58	-2.35	0.75	0.952099
10558	dm3.chr3R	14,729,629 – 14,729,734	- - - - - - - -	14516	14,729,629 – 14,729,734	-	11	115	60.39	-1.20	0.41	0.951258
10561	dm3.chr3R	14,744,119 – 14,744,215	- - - intron="intron;ID=intron_FBgn0038661:1_FBgn0038661:4;Name=Xrp1-in;Parent=FBtr0083700;parent_type=mRNA" - - - -	14519	14,744,119 – 14,744,215	+	12	108	58.37	-1.69	0.52	0.999009
10562	dm3.chr3R	14,745,375 – 14,745,484	- - - intron="intron;ID=intron_FBgn0038661:4_FBgn0038661:5;Name=Xrp1-in;Parent=FBtr0083700,FBtr0083701;parent_type=mRNA" - - - -	14521	14,745,375 – 14,745,484	+	4	113	85.45	-3.92	0.82	0.998836
10569	dm3.chr3R	14,792,300 – 14,792,413	- - - intron="intron;ID=intron_FBgn0261262:5_FBgn0261262:7;Name=CG42613-in;Parent=FBtr0304686;parent_type=mRNA" - - - -	14528	14,792,300 – 14,792,413	+	4	119	69.33	-1.75	0.65	0.972291
10570	dm3.chr3R	14,794,225 – 14,794,319	- - - intron="intron;ID=intron_FBgn0261262:5_FBgn0261262:7;Name=CG42613-in;Parent=FBtr0304686;parent_type=mRNA" - - - -	14529	14,794,225 – 14,794,319	+	9	111	71.00	-1.66	0.69	0.992522
10571	dm3.chr3R	14,796,076 – 14,796,167	- - - intron="intron;ID=intron_FBgn0261262:10_FBgn0261262:11;Name=CG42613-in;Parent=FBtr0304688,FBtr0304685,FBtr0304686,FBtr0304687;parent_type=mRNA" - - - -	14530	14,796,076 – 14,796,167	+	7	96	73.50	-2.84	0.67	0.998835
10571	dm3.chr3R	14,796,076 – 14,796,167		14531	14,796,076 – 14,796,167	-	7	96	73.50	-2.35	0.58	0.991350
10572	dm3.chr3R	14,796,639 – 14,796,713	- - - intron="intron;ID=intron_FBgn0261262:11_FBgn0261262:12;Name=CG42613-in;Parent=FBtr0304688,FBtr0304685,FBtr0304686,FBtr0304687;parent_type=mRNA" - - - -	14532	14,796,639 – 14,796,713	+	6	76	67.63	-5.45	0.43	0.999967
10572	dm3.chr3R	14,796,639 – 14,796,713		14533	14,796,639 – 14,796,713	-	6	76	67.63	-4.23	0.14	0.987588
10573	dm3.chr3R	14,814,809 – 14,814,901	- - - intron="intron;ID=intron_FBgn0026239:1_FBgn0026239:2;Name=gukh-in;Parent=FBtr0089767,FBtr0089768,FBtr0100317,FBtr0112924;parent_type=mRNA" - - - -	14534	14,814,809 – 14,814,901	+	6	101	67.41	-1.91	0.47	0.986771
10574	dm3.chr3R	14,818,460 – 14,818,596	- - - intron="intron;ID=intron_FBgn0026239:1_FBgn0026239:2;Name=gukh-in;Parent=FBtr0089767,FBtr0089768,FBtr0100317,FBtr0112924;parent_type=mRNA" - - - -	14536	14,818,460 – 14,818,557	-	5	97	88.72	-1.91	0.97	0.977310
10578	dm3.chr3R	14,861,550 – 14,861,641	- - - - - - - -	14543	14,861,550 – 14,861,641	+	7	100	78.50	-1.96	0.57	0.905063
10578	dm3.chr3R	14,861,550 – 14,861,641	- - - - - - - -	14544	14,861,550 – 14,861,641	-	7	100	78.50	-2.70	0.48	0.972438
10580	dm3.chr3R	14,870,155 – 14,870,253	- - - - - - - -	14546	14,870,155 – 14,870,253	+	12	107	70.28	-1.90	0.50	0.989146
10582	dm3.chr3R	14,876,621 – 14,876,673	- - - intron="intron;ID=intron_FBgn0004876:9_FBgn0004876:8;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14549	14,876,621 – 14,876,673	-	3	52	94.84	-2.10	0.93	0.942882
10588	dm3.chr3R	14,884,613 – 14,884,717	- - - intron="intron;ID=intron_FBgn0004876:9_FBgn0004876:8;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14556	14,884,613 – 14,884,717	-	7	104	75.33	-2.27	0.46	0.947528
10590	dm3.chr3R	14,895,400 – 14,895,505	- - - intron="intron;ID=intron_FBgn0004876:10_FBgn0004876:9;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14558	14,895,400 – 14,895,505	+	7	117	69.56	-2.68	0.39	0.993674
10590	dm3.chr3R	14,895,400 – 14,895,505		14559	14,895,400 – 14,895,505	-	7	117	69.56	-2.56	0.47	0.997580
10592	dm3.chr3R	14,911,229 – 14,911,335	- - - intron="intron;ID=intron_FBgn0004876:10_FBgn0004876:9;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14562	14,911,229 – 14,911,335	-	5	112	81.58	-2.87	0.68	0.991080
10594	dm3.chr3R	14,917,855 – 14,918,023	- - - intron="intron;ID=intron_FBgn0004876:11_FBgn0004876:10;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14564	14,917,855 – 14,918,023	-	5	173	93.83	-2.75	0.89	0.984847
10598	dm3.chr3R	14,950,483 – 14,950,578	- - CDS="CDS;ID=CDS_FBgn0038679:4_238;Name=CG6040-cds;Parent=FBtr0304715;parent_type=mRNA" - - - - -	14569	14,950,483 – 14,950,578	+	6	107	84.98	-2.37	0.73	0.949014
10604	dm3.chr3R	14,979,969 – 14,980,127	- - - - - - - -	14575	14,979,969 – 14,980,061	-	6	103	73.87	-2.28	0.45	0.905353
10604	dm3.chr3R	14,979,969 – 14,980,127	- - - - - - - -	14578	14,980,008 – 14,980,127	-	6	120	73.26	-2.28	0.47	0.970013
10607	dm3.chr3R	15,023,370 – 15,023,551	- - - intron="intron;ID=intron_CG31475:2_CG31475:3;Name=CG31475-in;Parent=FBtr0083735;parent_type=mRNA" - - - -	14585	15,023,443 – 15,023,551	-	7	117	74.53	-1.66	0.64	0.934690
10609	dm3.chr3R	15,030,148 – 15,030,293	- - - - - - - -	14588	15,030,186 – 15,030,293	+	3	110	95.45	-5.82	0.98	0.997973
10615	dm3.chr3R	15,087,794 – 15,087,940	- - - - - - - -	14594	15,087,794 – 15,087,902	+	8	115	75.21	-2.10	0.53	0.958013
				14595	15,087,794 – 15,087,902	-	8	115	75.21	-2.01	0.51	0.926805
				14596	15,087,834 – 15,087,940	+	8	119	83.15	-2.95	0.49	0.935860
10617	dm3.chr3R	15,107,893 – 15,108,006	- - - - - - - -	14599	15,107,893 – 15,108,000	-	10	115	78.79	-3.06	0.38	0.968035
10618	dm3.chr3R	15,113,646 – 15,113,742	- - - - - - - -	14601	15,113,646 – 15,113,742	+	10	111	74.91	-1.72	0.67	0.976147
10618	dm3.chr3R	15,113,646 – 15,113,742	- - - - - - - -	14602	15,113,646 – 15,113,742	-	10	111	74.91	-2.07	0.53	0.964791
10619	dm3.chr3R	15,120,837 – 15,120,973	- - - - - - - -	14603	15,120,837 – 15,120,942	-	10	105	90.36	-2.56	0.78	0.968865
10619	dm3.chr3R	15,120,837 – 15,120,973	- - - - - - - -	14605	15,120,871 – 15,120,973	-	10	108	81.87	-1.91	0.68	0.926831
10623	dm3.chr3R	15,139,842 – 15,139,934	- - - intron="intron;ID=intron_FBgn0000463:6_FBgn0000463:5;Name=Dl-in;Parent=FBtr0083739,FBtr0083740,FBtr0304658;parent_type=mRNA" - - - -	14609	15,139,842 – 15,139,934	-	9	105	81.72	-2.84	0.52	0.966714
10624	dm3.chr3R	15,151,730 – 15,151,832	- - - - - - - -	14610	15,151,730 – 15,151,832	+	5	102	95.88	-2.99	0.93	0.993035
10625	dm3.chr3R	15,152,467 – 15,152,528	- - - - - - - -	14612	15,152,467 – 15,152,528	-	5	70	65.37	-1.95	0.48	0.990975
10626	dm3.chr3R	15,152,742 – 15,152,834	FBnoncoding="pre_miRNA;ID=FBtr0304363;Name=mir-997-RM;Parent=FBgn0262262;Alias=CR42969-RM;Dbxref=FlyBase_Annotation_IDs:CR42969-RM,miRBase:MI0005859" - - - - - - "mirBase_v16=dme-mir-997\|3.1e-35"	14613	15,152,742 – 15,152,834	+	4	97	76.90	-1.98	0.78	0.973083
10626	dm3.chr3R	15,152,742 – 15,152,834		14614	15,152,742 – 15,152,834	-	4	97	76.90	-1.50	0.87	0.945270
10628	dm3.chr3R	15,162,228 – 15,162,325	- - - - - - - -	14616	15,162,228 – 15,162,325	+	12	107	75.11	-1.55	0.52	0.917443
10629	dm3.chr3R	15,169,794 – 15,169,888	- - - - - - - -	14617	15,169,794 – 15,169,888	+	10	99	70.81	-1.59	0.63	0.989978
10630	dm3.chr3R	15,189,217 – 15,189,317	- - - - - - - -	14619	15,189,217 – 15,189,317	+	12	119	73.46	-2.08	0.64	0.996575
10630	dm3.chr3R	15,189,217 – 15,189,317	- - - - - - - -	14620	15,189,217 – 15,189,317	-	12	119	73.46	-2.12	0.50	0.986161
10633	dm3.chr3R	15,239,265 – 15,239,345	- - - intron="intron;ID=intron_CG31221:1_CG31221:3;Name=CG31221-in;Parent=FBtr0083762;parent_type=mRNA" - - - -	14623	15,239,265 – 15,239,345	+	6	81	69.88	-2.21	0.39	0.952573
10636	dm3.chr3R	15,285,446 – 15,285,544	- - - - - - - -	14626	15,285,446 – 15,285,544	+	11	103	73.46	-4.24	0.85	0.999620
10636	dm3.chr3R	15,285,446 – 15,285,544	- - - - - - - -	14627	15,285,446 – 15,285,544	-	11	103	73.46	-2.49	0.75	0.999128
10638	dm3.chr3R	15,323,793 – 15,323,889	- - - intron="intron;ID=intron_FBgn0024242:18_FBgn0024242:20;Name=Dys-in;Parent=FBtr0083764,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - -	14629	15,323,793 – 15,323,889	-	7	110	65.94	-1.85	0.40	0.907335
10639	dm3.chr3R	15,323,982 – 15,324,108	- - - intron="intron;ID=intron_FBgn0024242:18_FBgn0024242:20;Name=Dys-in;Parent=FBtr0083764,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - -	14630	15,323,982 – 15,324,089	-	7	107	69.40	-2.03	0.38	0.940402
10639	dm3.chr3R	15,323,982 – 15,324,108		14631	15,323,992 – 15,324,108	-	5	116	83.19	-3.66	0.51	0.993428
10640	dm3.chr3R	15,330,523 – 15,330,646	- - CDS="CDS;ID=CDS_FBgn0024242:19_94;Name=Dys-cds;Parent=FBtr0083766;parent_type=mRNA" intron="intron;ID=intron_FBgn0024242:18_FBgn0024242:20;Name=Dys-in;Parent=FBtr0083764,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - -	14632	15,330,523 – 15,330,613	+	12	108	76.59	-1.70	0.66	0.962903
10640	dm3.chr3R	15,330,523 – 15,330,646		14633	15,330,556 – 15,330,646	+	12	114	74.96	-1.80	0.58	0.941290
10641	dm3.chr3R	15,334,638 – 15,334,742	- - - intron="intron;ID=intron_FBgn0024242:25_FBgn0024242:28;Name=Dys-in;Parent=FBtr0083764,FBtr0083765,FBtr0083766,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - -	14634	15,334,638 – 15,334,742	-	10	116	58.71	-2.23	0.24	0.962951
10646	dm3.chr3R	15,359,131 – 15,359,190	- - - intron="intron;ID=intron_FBgn0024242:27_FBgn0024242:28;Name=Dys-in;Parent=FBtr0110915;parent_type=mRNA" - - - -	14640	15,359,131 – 15,359,190	+	6	60	76.29	-1.80	0.59	0.938194
10653	dm3.chr3R	15,393,637 – 15,393,717	- - - intron="intron;ID=intron_FBgn0024242:31_FBgn0024242:34;Name=Dys-in;Parent=FBtr0083764,FBtr0083765,FBtr0083766,FBtr0110915,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - -	14650	15,393,637 – 15,393,717	+	4	80	76.67	-1.86	0.75	0.959302
10661	dm3.chr3R	15,454,140 – 15,454,250	- - - - - - - -	14658	15,454,140 – 15,454,250	+	5	110	81.30	-2.06	0.69	0.919652
10662	dm3.chr3R	15,456,737 – 15,456,833	- - - - - - - -	14659	15,456,737 – 15,456,833	-	4	107	67.30	-2.04	0.49	0.970304
10665	dm3.chr3R	15,458,567 – 15,458,733	- - - - - - - -	14663	15,458,567 – 15,458,659	-	5	94	87.79	-2.38	0.87	0.981385
10666	dm3.chr3R	15,463,518 – 15,463,610	- - - intron="intron;ID=intron_FBgn0038721:9_FBgn0038721:8;Name=CG16718-in;Parent=FBtr0083805,FBtr0083806,FBtr0302492;parent_type=mRNA" - - - -	14665	15,463,518 – 15,463,610	-	9	100	62.39	-1.61	0.33	0.932629
10667	dm3.chr3R	15,478,532 – 15,478,640	- - - - - - - -	14666	15,478,532 – 15,478,640	+	11	115	64.67	-0.43	0.67	0.912235
10668	dm3.chr3R	15,508,063 – 15,508,157	- - - intron="intron;ID=intron_CG31216:1_CG31216:2;Name=Naam-in;Parent=FBtr0083786;parent_type=mRNA" - - - -	14667	15,508,063 – 15,508,157	-	7	100	78.83	-1.83	0.76	0.971866
10677	dm3.chr3R	15,579,088 – 15,579,179	- - - intron="intron;ID=intron_FBgn0024963:2_FBgn0024963:3;Name=GluClalpha-in;Parent=FBtr0100127,FBtr0083788,FBtr0083787,FBtr0100128,FBtr0301378,FBtr0301379,FBtr0301380;parent_type=mRNA" - - - -	14677	15,579,088 – 15,579,179	-	12	103	73.59	-2.81	0.43	0.997137
10678	dm3.chr3R	15,612,726 – 15,612,842	- - - - - - - -	14678	15,612,726 – 15,612,833	+	5	107	88.22	-2.62	0.70	0.929053
10678	dm3.chr3R	15,612,726 – 15,612,842	- - - - - - - -	14679	15,612,726 – 15,612,833	-	5	107	88.22	-2.58	0.69	0.909653
10680	dm3.chr3R	15,628,403 – 15,628,502	FBnoncoding="tRNA;ID=FBtr0083794;Name=tRNA:CR31471-RA;Parent=FBgn0051471;Alias=CR31471-RA;Dbxref=FlyBase_Annotation_IDs:CR31471-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna28" - intron="intron;ID=intron_FBgn0014135:5_FBgn0014135:4;Name=bnl-in;Parent=FBtr0083795,FBtr0300123;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAJJ01000411.1/14125-14198\|1.0e-25" - - "mirBase_v16=hsa-mir-3676\|4.2e-16"	14685	15,628,403 – 15,628,502	-	13	109	79.65	-2.05	0.85	0.993972
10684	dm3.chr3R	15,660,998 – 15,661,089	- - - intron="intron;ID=intron_FBgn0014135:6_FBgn0014135:5;Name=bnl-in;Parent=FBtr0083795,FBtr0300123;parent_type=mRNA" - - - -	14690	15,660,998 – 15,661,089	-	9	99	72.06	-1.13	0.62	0.939720
10689	dm3.chr3R	15,696,667 – 15,696,746	- - CDS="CDS;ID=CDS_FBgn0038740:5_69;Name=CG4562-cds;Parent=FBtr0083859;parent_type=mRNA" - - - - -	14695	15,696,667 – 15,696,746	-	9	79	72.30	-1.24	0.55	0.923286
10690	dm3.chr3R	15,698,941 – 15,699,034	- - - intron="intron;ID=intron_FBgn0038740:9_FBgn0038740:8;Name=CG4562-in;Parent=FBtr0083859,FBtr0113250;parent_type=mRNA" - - - -	14696	15,698,941 – 15,699,034	+	7	102	70.85	-2.55	0.39	0.981779
10690	dm3.chr3R	15,698,941 – 15,699,034		14697	15,698,941 – 15,699,034	-	7	102	70.85	-2.88	0.48	0.998497
10697	dm3.chr3R	15,797,880 – 15,797,974	- - - - - - - -	14704	15,797,880 – 15,797,974	+	12	108	73.03	-2.70	0.31	0.928463
10699	dm3.chr3R	15,828,264 – 15,828,361	- - - - - - - -	14708	15,828,264 – 15,828,361	+	3	97	96.55	-2.29	0.97	0.979244
10704	dm3.chr3R	15,889,927 – 15,890,028	- - - - - - - -	14714	15,889,927 – 15,890,028	+	12	116	91.69	-2.09	0.92	0.971814
10706	dm3.chr3R	15,900,569 – 15,900,660	- - - - - - - -	14716	15,900,569 – 15,900,660	+	6	98	75.79	-1.96	0.52	0.909637
10706	dm3.chr3R	15,900,569 – 15,900,660	- - - - - - - -	14717	15,900,569 – 15,900,660	-	6	98	75.79	-2.14	0.50	0.934738
10707	dm3.chr3R	15,909,204 – 15,909,303	- - - - - - - -	14718	15,909,204 – 15,909,303	+	7	105	71.27	-2.61	0.62	0.999090
10707	dm3.chr3R	15,909,204 – 15,909,303	- - - - - - - -	14719	15,909,204 – 15,909,303	-	7	105	71.27	-1.94	0.44	0.934233
10709	dm3.chr3R	15,924,562 – 15,924,636	- - - - - - - -	14721	15,924,562 – 15,924,636	-	4	85	62.00	-2.47	0.37	0.974335
10712	dm3.chr3R	15,952,007 – 15,952,123	- - - - - - - -	14724	15,952,007 – 15,952,123	-	5	117	86.17	-2.38	0.80	0.968524
10716	dm3.chr3R	15,973,125 – 15,973,216	- - - - - - - -	14729	15,973,125 – 15,973,216	-	11	120	87.75	-2.81	0.77	0.984734
10727	dm3.chr3R	16,047,022 – 16,047,112	- - - intron="intron;ID=intron_FBgn0083975:11_FBgn0083975:12;Name=CG34139-in;Parent=FBtr0301074,FBtr0301075,FBtr0301680;parent_type=mRNA" - - - -	14742	16,047,022 – 16,047,112	-	10	109	85.77	-2.34	0.81	0.975931
10731	dm3.chr3R	16,080,424 – 16,080,527	- - - intron="intron;ID=intron_FBgn0262582:2_FBgn0262582:3;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14746	16,080,424 – 16,080,527	-	6	104	85.55	-2.48	0.68	0.946734
10732	dm3.chr3R	16,084,449 – 16,084,576	- - - intron="intron;ID=intron_FBgn0262582:2_FBgn0262582:3;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14747	16,084,449 – 16,084,552	+	5	111	82.65	-2.24	0.84	0.984366
10732	dm3.chr3R	16,084,449 – 16,084,576		14749	16,084,469 – 16,084,576	+	6	112	77.68	-1.74	0.77	0.969237
10734	dm3.chr3R	16,091,961 – 16,092,056	- - - intron="intron;ID=intron_FBgn0262582:2_FBgn0262582:3;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14751	16,091,961 – 16,092,056	+	4	95	84.71	-1.61	0.98	0.966973
10735	dm3.chr3R	16,105,447 – 16,105,504	- - - intron="intron;ID=intron_FBgn0262582:2_FBgn0262582:3;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14752	16,105,447 – 16,105,504	-	7	65	58.81	-1.97	0.50	0.998954
10736	dm3.chr3R	16,108,540 – 16,108,630	- - - intron="intron;ID=intron_FBgn0262582:2_FBgn0262582:3;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14753	16,108,540 – 16,108,630	-	6	91	74.63	-1.82	0.52	0.911937
10740	dm3.chr3R	16,134,526 – 16,134,601	- - - - - - - -	14757	16,134,526 – 16,134,601	-	4	75	69.96	-1.92	0.62	0.977293
10742	dm3.chr3R	16,152,120 – 16,152,170	- - CDS="CDS;ID=CDS_FBgn0038787:3_221;Name=CG4360-cds;Parent=FBtr0113252;parent_type=mRNA" - - - - -	14759	16,152,120 – 16,152,170	-	12	50	75.09	-1.33	0.57	0.954381
10755	dm3.chr3R	16,249,171 – 16,249,264	- - - intron="intron;ID=intron_FBgn0262869:20_FBgn0262869:19;Name=mun-in;Parent=FBtr0306199,FBtr0306203;parent_type=mRNA" - - - -	14774	16,249,171 – 16,249,264	-	12	120	69.12	-1.73	0.41	0.903599
10760	dm3.chr3R	16,281,770 – 16,281,915	- - - - - - - -	14782	16,281,770 – 16,281,887	+	12	120	94.03	-2.26	0.93	0.976011
10760	dm3.chr3R	16,281,770 – 16,281,915	- - - - - - - -	14783	16,281,770 – 16,281,887	-	12	120	94.03	-2.72	0.79	0.948629
10761	dm3.chr3R	16,285,355 – 16,285,456	- - - - - - - -	14785	16,285,355 – 16,285,456	+	8	102	85.09	-2.20	0.72	0.919759
10764	dm3.chr3R	16,311,188 – 16,311,285	- - - - - - - -	14789	16,311,188 – 16,311,285	-	5	97	80.84	-2.53	0.61	0.958057
10771	dm3.chr3R	16,341,331 – 16,341,409	- - - - - - - -	14796	16,341,331 – 16,341,409	+	4	82	55.74	-1.28	0.43	0.958272
10771	dm3.chr3R	16,341,331 – 16,341,409	- - - - - - - -	14797	16,341,331 – 16,341,409	-	4	82	55.74	-1.51	0.43	0.982402
10774	dm3.chr3R	16,349,106 – 16,349,201	- - - - - - - -	14802	16,349,106 – 16,349,201	+	6	109	74.78	-1.82	0.59	0.918229
10777	dm3.chr3R	16,379,976 – 16,380,126	- - CDS="CDS;ID=CDS_FBgn0067782:5_78;Name=att-ORFB-cds;Parent=FBtr0090034;parent_type=mRNA" - - - - -	14806	16,379,976 – 16,380,071	+	3	95	95.09	-2.63	0.97	0.991504
10781	dm3.chr3R	16,398,838 – 16,398,918	- - - - - - - -	14811	16,398,838 – 16,398,918	+	5	84	89.26	-2.14	0.84	0.932246
10781	dm3.chr3R	16,398,838 – 16,398,918	- - - - - - - -	14812	16,398,838 – 16,398,918	-	5	84	89.26	-3.13	0.93	0.997266
10782	dm3.chr3R	16,400,694 – 16,400,828	- - - - - - - -	14813	16,400,694 – 16,400,828	+	11	137	74.01	-2.92	0.43	0.996815
10783	dm3.chr3R	16,405,565 – 16,405,701	- - - - - - - -	14814	16,405,565 – 16,405,701	+	5	136	85.29	-2.39	0.75	0.959363
10783	dm3.chr3R	16,405,565 – 16,405,701	- - - - - - - -	14815	16,405,565 – 16,405,701	-	5	136	85.29	-2.45	0.74	0.962285
10785	dm3.chr3R	16,420,546 – 16,420,666	- - - intron="intron;ID=intron_FBgn0023097:1_FBgn0023097:3;Name=bon-in;Parent=FBtr0083912;parent_type=mRNA" - - - -	14817	16,420,546 – 16,420,638	-	7	120	62.22	-1.89	0.36	0.913362
10786	dm3.chr3R	16,422,239 – 16,422,315	- - - intron="intron;ID=intron_FBgn0023097:1_FBgn0023097:3;Name=bon-in;Parent=FBtr0083912;parent_type=mRNA" - - - -	14819	16,422,239 – 16,422,315	-	5	76	59.38	-2.20	0.40	0.993058
10788	dm3.chr3R	16,451,926 – 16,452,061	- - CDS="CDS;ID=CDS_CG5460:5_66;Name=H-cds;Parent=FBtr0083916;parent_type=mRNA" - - - - -	14821	16,451,926 – 16,452,024	+	11	114	61.70	-2.87	0.20	0.979102
10788	dm3.chr3R	16,451,926 – 16,452,061		14822	16,451,926 – 16,452,024	-	11	114	61.70	-2.97	0.22	0.990889
10790	dm3.chr3R	16,496,146 – 16,496,237	- - - intron="intron;ID=intron_CG5494:1_CG5494:2;Name=Cpr92F-in;Parent=FBtr0083919;parent_type=mRNA" - - - -	14826	16,496,146 – 16,496,237	+	12	114	58.64	-2.22	0.31	0.991297
10793	dm3.chr3R	16,524,937 – 16,525,036	- - - intron="intron;ID=intron_FBgn0024944:4_FBgn0024944:3;Name=Oamb-in;Parent=FBtr0083932,FBtr0083933,FBtr0083934;parent_type=mRNA" - - - -	14831	16,524,937 – 16,525,036	-	7	105	75.18	-1.30	0.69	0.929565
10797	dm3.chr3R	16,550,922 – 16,551,017	- - - - - - - -	14836	16,550,922 – 16,551,017	+	9	112	75.81	-2.32	0.53	0.983169
10802	dm3.chr3R	16,578,772 – 16,578,894	- - - intron="intron;ID=intron_FBgn0259222:15_FBgn0259222:17;Name=CG42322-in;Parent=FBtr0305057,FBtr0305058;parent_type=mRNA" - - - -	14841	16,578,772 – 16,578,889	+	5	120	91.29	-2.37	0.80	0.912923
				14842	16,578,772 – 16,578,889	-	5	120	91.29	-3.17	0.89	0.995665
				14844	16,578,777 – 16,578,894	-	5	120	91.03	-3.00	0.89	0.994215
10806	dm3.chr3R	16,611,667 – 16,611,762	- - - intron="intron;ID=intron_FBgn0038826:4_FBgn0038826:6;Name=CG17838-in;Parent=FBtr0083961;parent_type=mRNA" - - - -	14849	16,611,667 – 16,611,762	-	7	105	59.59	-1.69	0.33	0.933342
10807	dm3.chr3R	16,617,611 – 16,617,706	- - - - - - - -	14850	16,617,611 – 16,617,706	+	11	106	59.30	-0.74	0.48	0.949842
10809	dm3.chr3R	16,624,153 – 16,624,233	- - - intron="intron;ID=intron_FBgn0038826:16_FBgn0038826:17;Name=CG17838-in;Parent=FBtr0083959,FBtr0083962;parent_type=mRNA" - - - -	14852	16,624,153 – 16,624,233	+	7	89	65.47	-1.40	0.50	0.965046
10809	dm3.chr3R	16,624,153 – 16,624,233		14853	16,624,153 – 16,624,233	-	7	89	65.47	-2.13	0.36	0.964365
10813	dm3.chr3R	16,647,796 – 16,647,862	- - - - - - - -	14857	16,647,796 – 16,647,862	-	5	81	78.35	-1.81	0.72	0.909592
10814	dm3.chr3R	16,648,400 – 16,648,494	FBnoncoding="snoRNA;ID=FBtr0113584;Name=snoRNA:Psi18S-1295-RA;Parent=FBgn0083055;Dbxref=FlyBase_Annotation_IDs:CR34615-RA,REFSEQ:NR_003901;score_text=Weakly" - - intron="intron;ID=intron_CG15693:2_CG15693:3;Name=RpS20-in;Parent=FBtr0083964;parent_type=mRNA" - - - -	14858	16,648,400 – 16,648,494	+	12	114	56.25	-3.97	0.72	0.999973
10814	dm3.chr3R	16,648,400 – 16,648,494		14859	16,648,400 – 16,648,494	-	12	114	56.25	-2.15	0.35	0.996236
10817	dm3.chr3R	16,699,792 – 16,699,844	- - CDS="CDS;ID=CDS_CG5609:2_91;Name=TotB-cds;Parent=FBtr0083973;parent_type=mRNA" - - - - -	14862	16,699,792 – 16,699,844	-	5	52	82.12	-2.75	0.78	0.993320
10819	dm3.chr3R	16,706,650 – 16,706,748	- - - - - - - -	14865	16,706,650 – 16,706,745	-	5	108	85.88	-2.40	0.83	0.973628
10820	dm3.chr3R	16,716,412 – 16,716,492	FBnoncoding="tRNA;ID=FBtr0083975;Name=tRNA:CR31480-RA;Parent=FBgn0051480;Alias=CR31480-RA;Dbxref=FlyBase_Annotation_IDs:CR31480-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna29" - - "Rfam_10.0=RF00005;tRNA;AAPT01018746.1/53261-53332\|1.2e-24" - - -	14867	16,716,412 – 16,716,492	+	12	82	90.31	-2.08	0.95	0.984252
10820	dm3.chr3R	16,716,412 – 16,716,492		14868	16,716,412 – 16,716,492	-	12	82	90.31	-2.46	0.96	0.993881
10821	dm3.chr3R	16,717,372 – 16,717,451	FBnoncoding="tRNA;ID=FBtr0083977;Name=tRNA:CR31333-RA;Parent=FBgn0051333;Alias=CR31333-RA;Dbxref=FlyBase_Annotation_IDs:CR31333-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna31" - - "Rfam_10.0=RF00005;tRNA;AAPT01018746.1/53261-53332\|1.2e-24" - - -	14869	16,717,372 – 16,717,451	+	13	83	89.04	-1.93	0.95	0.981844
10821	dm3.chr3R	16,717,372 – 16,717,451		14870	16,717,372 – 16,717,451	-	13	83	89.04	-2.55	0.96	0.995581
10822	dm3.chr3R	16,719,125 – 16,719,175	- - - - - - - -	14871	16,719,125 – 16,719,175	+	8	51	90.59	-2.27	0.89	0.974687
10825	dm3.chr3R	16,741,412 – 16,741,502	- - - intron="intron;ID=intron_FBgn0038842:1_FBgn0038842:2;Name=CG5630-in;Parent=FBtr0083979,FBtr0113257;parent_type=mRNA" - - - -	14874	16,741,412 – 16,741,502	-	5	90	80.81	-2.15	0.70	0.946351
10828	dm3.chr3R	16,756,580 – 16,756,694	- - - intron="intron;ID=intron_FBgn0051191:7_FBgn0051191:5;Name=CG31191-in;Parent=FBtr0302412;parent_type=mRNA" - - - -	14877	16,756,580 – 16,756,694	-	11	120	83.76	-1.64	0.83	0.917923
10832	dm3.chr3R	16,800,839 – 16,800,947	- - - - - - - -	14883	16,800,839 – 16,800,947	-	7	114	80.31	-2.43	0.57	0.948338
10833	dm3.chr3R	16,802,389 – 16,802,491	- - - - - - - -	14884	16,802,389 – 16,802,491	-	4	104	85.76	-2.38	0.77	0.954827
10835	dm3.chr3R	16,813,687 – 16,813,788	- - - intron="intron;ID=intron_FBgn0013995:3_FBgn0013995:5;Name=Calx-in;Parent=FBtr0083999;parent_type=mRNA" - - - -	14887	16,813,687 – 16,813,788	-	6	103	73.16	-2.95	0.42	0.990379
10836	dm3.chr3R	16,814,647 – 16,814,740	- - - intron="intron;ID=intron_FBgn0013995:3_FBgn0013995:5;Name=Calx-in;Parent=FBtr0083999;parent_type=mRNA" - - - -	14888	16,814,647 – 16,814,740	-	6	95	59.79	-1.02	0.43	0.907590
10838	dm3.chr3R	16,817,972 – 16,818,063	- - - - - - - -	14890	16,817,972 – 16,818,063	+	8	114	64.01	-0.93	0.55	0.922082
10844	dm3.chr3R	16,935,547 – 16,935,605	- - - intron="intron;ID=intron_CG5760:3_CG5760:4;Name=rtet-in;Parent=FBtr0084009;parent_type=mRNA" - - - -	14898	16,935,547 – 16,935,605	+	9	72	64.60	-1.61	0.47	0.981834
10845	dm3.chr3R	16,949,780 – 16,949,880	- - - intron="intron;ID=intron_CG3412:2_CG3412:3;Name=slmb-in;Parent=FBtr0084032;parent_type=mRNA" - - - -	14899	16,949,780 – 16,949,880	+	7	104	71.51	-2.51	0.50	0.996000
10853	dm3.chr3R	17,060,708 – 17,060,806	- - - intron="intron;ID=intron_CG3331:1_CG3331:2;Name=e-in;Parent=FBtr0084106;parent_type=mRNA" - - - -	14909	17,060,708 – 17,060,806	+	12	110	69.77	-1.63	0.56	0.988790
10854	dm3.chr3R	17,077,143 – 17,077,312	- - - intron="intron;ID=intron_CG5911:1_CG5911:2;Name=ETHR-in;Parent=FBtr0084053,FBtr0084054;parent_type=mRNA" - - - -	14911	17,077,143 – 17,077,235	-	11	116	74.89	-1.45	0.60	0.917418
10857	dm3.chr3R	17,083,224 – 17,083,325	- - - intron="intron;ID=intron_CG5911:1_CG5911:2;Name=ETHR-in;Parent=FBtr0084053,FBtr0084054;parent_type=mRNA" - - - -	14916	17,083,224 – 17,083,317	+	9	111	67.35	-1.44	0.47	0.905029
10858	dm3.chr3R	17,091,686 – 17,091,838	- - - - - - - -	14919	17,091,686 – 17,091,838	-	8	177	75.35	-2.52	0.55	0.988660
10859	dm3.chr3R	17,094,655 – 17,094,757	- - - - - - - -	14920	17,094,655 – 17,094,757	+	12	118	76.08	-2.32	0.46	0.959375
10862	dm3.chr3R	17,110,708 – 17,110,780	- - - intron="intron;ID=intron_FBgn0038880:6_FBgn0038880:5;Name=SIFR-in;Parent=FBtr0084099,FBtr0084098,FBtr0301815;parent_type=mRNA" - - - -	14926	17,110,708 – 17,110,780	+	6	72	86.61	-2.55	0.79	0.980017
10862	dm3.chr3R	17,110,708 – 17,110,780		14927	17,110,708 – 17,110,780	-	6	72	86.61	-2.58	0.71	0.956993
10864	dm3.chr3R	17,123,616 – 17,123,736	FBnoncoding="ncRNA;ID=FBtr0084058;Name=Hsromega-RB;Parent=FBgn0001234;Alias=Hsr-omega-1;Dbxref=FlyBase_Annotation_IDs:CR31400-RB,REFSEQ:NR_002068;score_text=Weakly" - - - - "Noncode_2.0=n4885_u4296_U18307_hsr-omega\|3.1e-60" "unique_Noncode_2.0=u4296_hsr-omega\|2.7e-60" -	14929	17,123,616 – 17,123,717	+	8	109	61.26	-2.13	0.39	0.994783
10864	dm3.chr3R	17,123,616 – 17,123,736		14930	17,123,643 – 17,123,736	+	8	101	60.69	-2.61	0.42	0.999478
10867	dm3.chr3R	17,160,238 – 17,160,388	- - CDS="CDS;ID=CDS_FBgn0038881:12_150;Name=CG16791-cds;Parent=FBtr0084095;parent_type=mRNA" - - - - -	14933	17,160,238 – 17,160,333	+	13	100	95.50	-3.61	0.93	0.997903
10871	dm3.chr3R	17,200,013 – 17,200,103	- - - intron="intron;ID=intron_FBgn0002781:27_FBgn0002781:26;Name=mod(mdg4)-in;Parent=FBtr0084073;parent_type=mRNA" - - - -	14939	17,200,013 – 17,200,103	+	10	113	69.92	-3.92	0.34	0.999362
10871	dm3.chr3R	17,200,013 – 17,200,103		14940	17,200,013 – 17,200,103	-	10	113	69.92	-4.57	0.47	0.999949
10872	dm3.chr3R	17,200,482 – 17,200,579	- - - intron="intron;ID=intron_FBgn0002781:27_FBgn0002781:26;Name=mod(mdg4)-in;Parent=FBtr0084073;parent_type=mRNA" - - - -	14941	17,200,482 – 17,200,579	-	10	114	58.47	-0.99	0.55	0.993158
10873	dm3.chr3R	17,216,968 – 17,217,078	- - - - - - - -	14942	17,216,968 – 17,217,078	-	7	113	69.80	-2.30	0.64	0.998180
10876	dm3.chr3R	17,277,003 – 17,277,055	- - - - - - - -	14945	17,277,003 – 17,277,055	-	3	52	92.31	-1.85	0.94	0.932394
10880	dm3.chr3R	17,293,994 – 17,294,095	- - - - - - - -	14951	17,293,994 – 17,294,095	-	12	110	75.44	-2.21	0.51	0.978347
10883	dm3.chr3R	17,307,681 – 17,307,795	- - - - - - - -	14954	17,307,681 – 17,307,795	+	5	115	75.55	-1.65	0.63	0.902051
10885	dm3.chr3R	17,313,560 – 17,313,716	- - - - - - - -	14956	17,313,560 – 17,313,716	-	6	168	65.32	-2.19	0.42	0.991206
10886	dm3.chr3R	17,327,308 – 17,327,367	- - - intron="intron;ID=intron_CG7937:1_CG7937:2;Name=C15-in;Parent=FBtr0084111;parent_type=mRNA" - - - -	14957	17,327,308 – 17,327,367	+	7	63	72.41	-1.72	0.56	0.933777
10889	dm3.chr3R	17,335,636 – 17,335,729	- - - intron="intron;ID=intron_CG7937:3_CG7937:4;Name=C15-in;Parent=FBtr0084111;parent_type=mRNA" - - - -	14961	17,335,636 – 17,335,729	+	11	114	67.64	-1.77	0.40	0.904514
10892	dm3.chr3R	17,356,905 – 17,357,026	- - - - - - - -	14964	17,356,905 – 17,357,002	-	12	114	82.03	-2.32	0.63	0.950399
10895	dm3.chr3R	17,359,911 – 17,360,007	- - - - - - - -	14969	17,359,911 – 17,360,007	+	11	102	73.02	-1.58	0.56	0.962588
10903	dm3.chr3R	17,385,382 – 17,385,438	- - - - - - - -	14981	17,385,382 – 17,385,438	+	12	56	98.54	-2.33	0.98	0.982853
10903	dm3.chr3R	17,385,382 – 17,385,438	- - - - - - - -	14982	17,385,382 – 17,385,438	-	12	56	98.54	-1.86	1.00	0.963561
10907	dm3.chr3R	17,410,181 – 17,410,322	- - - intron="intron;ID=intron_FBgn0013984:11_FBgn0013984:10;Name=InR-in;Parent=FBtr0084121,FBtr0290230,FBtr0290231,FBtr0290232;parent_type=mRNA" - - - -	14986	17,410,181 – 17,410,282	+	5	104	91.46	-2.63	0.79	0.945996
10909	dm3.chr3R	17,421,536 – 17,421,645	- - - - - - - -	14991	17,421,536 – 17,421,645	+	5	109	95.41	-2.65	0.93	0.987053
10909	dm3.chr3R	17,421,536 – 17,421,645	- - - - - - - -	14992	17,421,536 – 17,421,645	-	5	109	95.41	-2.85	0.91	0.988985
10910	dm3.chr3R	17,422,415 – 17,422,486	- - - - - - - -	14993	17,422,415 – 17,422,486	+	5	71	99.44	-2.44	0.99	0.986240
10910	dm3.chr3R	17,422,415 – 17,422,486	- - - - - - - -	14994	17,422,415 – 17,422,486	-	5	71	99.44	-2.70	1.00	0.993061
10912	dm3.chr3R	17,424,774 – 17,424,872	- - - - - - - -	14996	17,424,774 – 17,424,872	-	4	100	66.28	-2.27	0.48	0.987262
10914	dm3.chr3R	17,432,860 – 17,432,944	- - - intron="intron;ID=intron_FBgn0013984:15_FBgn0013984:14;Name=InR-in;Parent=FBtr0084121;parent_type=mRNA" - - - -	14999	17,432,860 – 17,432,944	+	5	84	96.67	-2.18	0.99	0.982464
10916	dm3.chr3R	17,448,219 – 17,448,297	FBnoncoding="pre_miRNA;ID=FBtr0304412;Name=mir-11-RM;Parent=FBgn0262434;Alias=CR42992-RM;Dbxref=FlyBase_Annotation_IDs:CR42992-RM,miRBase:MI0000131" - - intron="intron;ID=intron_CG6376:7_CG6376:8;Name=E2f-in;Parent=FBtr0084117,FBtr0084118,FBtr0084119;parent_type=mRNA" "Rfam_10.0=RF00813;mir-11;AASR01031502.1/1-45\|4.3e-18" - - "mirBase_v16=dsi-mir-11\|4.1e-37"	15002	17,448,219 – 17,448,297	+	14	96	74.22	-2.33	0.63	0.997521
10916	dm3.chr3R	17,448,219 – 17,448,297		15003	17,448,219 – 17,448,297	-	14	96	74.22	-3.43	0.64	0.999791
10919	dm3.chr3R	17,462,965 – 17,463,102	- - - - - - - -	15007	17,463,004 – 17,463,102	+	6	102	74.07	-2.63	0.57	0.996321
10920	dm3.chr3R	17,472,692 – 17,472,755	- - - intron="intron;ID=intron_CG6376:1_CG6376:2;Name=E2f-in;Parent=FBtr0084117;parent_type=mRNA" - - - -	15009	17,472,692 – 17,472,755	+	6	70	74.80	-1.84	0.63	0.958845
10921	dm3.chr3R	17,481,216 – 17,481,270	- - - intron="intron;ID=intron_CG6376:1_CG6376:2;Name=E2f-in;Parent=FBtr0084117;parent_type=mRNA" - - - -	15010	17,481,216 – 17,481,270	+	8	57	72.22	-1.23	0.64	0.940204
10923	dm3.chr3R	17,509,820 – 17,509,932	- - - intron="intron;ID=intron_CG31176:1_CG31176:2;Name=CG31176-in;Parent=FBtr0084114;parent_type=mRNA" - - - -	15013	17,509,820 – 17,509,932	-	5	113	87.60	-1.89	0.86	0.920147
10925	dm3.chr3R	17,525,914 – 17,525,974	- - - intron="intron;ID=intron_CG31176:1_CG31176:2;Name=CG31176-in;Parent=FBtr0084114;parent_type=mRNA" - - - -	15016	17,525,914 – 17,525,974	-	5	60	90.50	-1.79	0.97	0.967287
10926	dm3.chr3R	17,544,891 – 17,545,038	- - CDS="CDS;ID=CDS_CG31176:1_71;Name=CG31176-cds;Parent=FBtr0084114;parent_type=mRNA" - - - - -	15017	17,544,891 – 17,545,011	-	8	121	76.75	-2.02	0.63	0.977767
10927	dm3.chr3R	17,546,599 – 17,546,689	- - - - - - - -	15020	17,546,599 – 17,546,689	-	7	90	95.45	-2.14	0.89	0.912678
10929	dm3.chr3R	17,551,656 – 17,551,755	- - - - - - - -	15022	17,551,656 – 17,551,755	+	7	101	74.48	-1.83	0.60	0.979966
10930	dm3.chr3R	17,576,600 – 17,576,650	- - CDS="CDS;ID=CDS_CG31233:2_77;Name=CG31233-cds;Parent=FBtr0084127;parent_type=mRNA" - - - - -	15024	17,576,600 – 17,576,650	-	5	50	89.80	-1.77	0.91	0.924093
10932	dm3.chr3R	17,587,036 – 17,587,224	- - - intron="intron;ID=intron_FBgn0259237:5_FBgn0259237:7;Name=CG42335-in;Parent=FBtr0299852;parent_type=mRNA" - - - -	15026	17,587,036 – 17,587,224	-	3	192	50.09	-2.93	0.32	0.996973
10934	dm3.chr3R	17,609,366 – 17,609,458	- - - - - - - -	15028	17,609,366 – 17,609,458	+	9	102	67.86	-2.60	0.48	0.998898
10934	dm3.chr3R	17,609,366 – 17,609,458	- - - - - - - -	15029	17,609,366 – 17,609,458	-	9	102	67.86	-1.84	0.43	0.969573
10936	dm3.chr3R	17,631,641 – 17,631,742	- - - intron="intron;ID=intron_FBgn0013759:16_FBgn0013759:14;Name=CASK-in;Parent=FBtr0084162;parent_type=mRNA" - - - -	15031	17,631,641 – 17,631,742	+	8	111	71.61	-2.96	0.41	0.996216
10939	dm3.chr3R	17,640,240 – 17,640,399	- - - - - - - -	15037	17,640,271 – 17,640,391	-	3	120	97.22	-2.23	0.95	0.962862
10948	dm3.chr3R	17,718,234 – 17,718,327	- - - intron="intron;ID=intron_CG6678:4_CG6678:5;Name=CG6678-in;Parent=FBtr0084148;parent_type=mRNA" - - - -	15049	17,718,234 – 17,718,327	-	5	100	85.27	-1.83	0.83	0.905897
10950	dm3.chr3R	17,726,667 – 17,726,807	- - - intron="intron;ID=intron_CG6678:4_CG6678:5;Name=CG6678-in;Parent=FBtr0084148;parent_type=mRNA" - - - -	15051	17,726,667 – 17,726,772	+	10	112	79.69	-2.11	0.55	0.921796
10953	dm3.chr3R	17,746,165 – 17,746,270	- - - - - - - -	15055	17,746,165 – 17,746,270	+	7	116	69.20	-1.16	0.56	0.912549
10955	dm3.chr3R	17,760,764 – 17,760,849	- - - - - - - -	15057	17,760,764 – 17,760,849	+	6	99	70.19	-1.83	0.49	0.928468
10957	dm3.chr3R	17,768,768 – 17,768,887	- - - - - - - -	15059	17,768,768 – 17,768,887	+	3	119	97.20	-2.00	0.93	0.906716
10958	dm3.chr3R	17,789,095 – 17,789,210	- - - intron="intron;ID=intron_FBgn0013948:3_FBgn0013948:5;Name=Eip93F-in;Parent=FBtr0112874;parent_type=mRNA" - - - -	15061	17,789,095 – 17,789,210	-	7	115	68.72	-2.78	0.39	0.992051
10960	dm3.chr3R	17,810,530 – 17,810,620	- - - intron="intron;ID=intron_FBgn0013948:4_FBgn0013948:5;Name=Eip93F-in;Parent=FBtr0084169;parent_type=mRNA" - - - -	15063	17,810,530 – 17,810,620	+	5	92	89.84	-2.96	0.67	0.938581
10960	dm3.chr3R	17,810,530 – 17,810,620		15064	17,810,530 – 17,810,620	-	5	92	89.84	-2.80	0.67	0.904124
10961	dm3.chr3R	17,814,328 – 17,814,443	- - - intron="intron;ID=intron_FBgn0013948:4_FBgn0013948:5;Name=Eip93F-in;Parent=FBtr0084169;parent_type=mRNA" - - - -	15065	17,814,328 – 17,814,443	-	4	116	93.07	-2.33	0.84	0.914457
10965	dm3.chr3R	17,824,492 – 17,824,588	- - - intron="intron;ID=intron_FBgn0013948:7_FBgn0013948:9;Name=Eip93F-in;Parent=FBtr0084169;parent_type=mRNA" - - - -	15069	17,824,492 – 17,824,588	+	10	111	81.54	-2.14	0.62	0.918618
10967	dm3.chr3R	17,834,948 – 17,834,999	- - - - - - - -	15072	17,834,948 – 17,834,999	-	6	55	74.52	-3.19	0.49	0.997764
10968	dm3.chr3R	17,838,568 – 17,838,663	- - - - - - - -	15073	17,838,568 – 17,838,663	+	11	101	72.60	-3.95	0.78	0.999832
10969	dm3.chr3R	17,843,919 – 17,844,017	- - - intron="intron;ID=intron_FBgn0038922:5_FBgn0038922:4;Name=CG6439-in;Parent=FBtr0084190,FBtr0300788;parent_type=mRNA" - - - -	15074	17,843,919 – 17,844,017	-	4	101	89.97	-2.52	0.80	0.945772
10970	dm3.chr3R	17,865,503 – 17,865,593	- - - - - - - -	15075	17,865,503 – 17,865,593	+	5	91	74.92	-1.80	0.60	0.938111
10972	dm3.chr3R	17,872,652 – 17,872,767	- - - intron="intron;ID=intron_FBgn0017397:2_FBgn0017397:3;Name=how-in;Parent=FBtr0084178,FBtr0084177,FBtr0100514,FBtr0301401,FBtr0301402;parent_type=mRNA" - - - -	15077	17,872,652 – 17,872,744	+	5	104	89.12	-1.50	0.95	0.906542
10972	dm3.chr3R	17,872,652 – 17,872,767		15078	17,872,676 – 17,872,767	+	5	103	89.00	-2.35	0.98	0.992516
10977	dm3.chr3R	17,894,066 – 17,894,181	- - - intron="intron;ID=intron_FBgn0017397:3_FBgn0017397:4;Name=how-in;Parent=FBtr0084178,FBtr0084177,FBtr0100514,FBtr0301401,FBtr0301402;parent_type=mRNA" - - - -	15084	17,894,066 – 17,894,181	+	7	135	73.96	-1.63	0.59	0.925051
10979	dm3.chr3R	17,914,316 – 17,914,435	- - - - - - - -	15086	17,914,316 – 17,914,435	+	4	120	74.16	-2.12	0.66	0.958730
10980	dm3.chr3R	17,915,553 – 17,915,701	- - - - - - - -	15089	17,915,553 – 17,915,663	-	6	116	72.98	-2.23	0.64	0.995364
10985	dm3.chr3R	17,950,402 – 17,950,494	- - CDS="CDS;ID=CDS_FBgn0259736:2_94;Name=CG42390-cds;Parent=FBtr0300008;parent_type=mRNA" - - - - -	15097	17,950,402 – 17,950,494	+	4	92	91.12	-2.70	0.86	0.982217
10986	dm3.chr3R	17,955,862 – 17,955,981	- - CDS="CDS;ID=CDS_FBgn0259736:7_94;Name=CG42390-cds;Parent=FBtr0300008;parent_type=mRNA" - - - - -	15098	17,955,862 – 17,955,981	+	7	119	76.39	-2.11	0.50	0.951266
10988	dm3.chr3R	17,959,413 – 17,959,469	- - - - - - - -	15101	17,959,413 – 17,959,469	-	7	57	64.89	-1.22	0.44	0.926717
10995	dm3.chr3R	18,014,031 – 18,014,168	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15108	18,014,031 – 18,014,129	-	9	123	66.52	-2.26	0.40	0.989426
10995	dm3.chr3R	18,014,031 – 18,014,168		15109	18,014,058 – 18,014,168	-	7	112	78.33	-2.23	0.62	0.982226
10996	dm3.chr3R	18,021,505 – 18,021,578	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15110	18,021,505 – 18,021,578	+	6	74	66.40	-1.58	0.43	0.946527
11000	dm3.chr3R	18,025,764 – 18,025,823	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15115	18,025,764 – 18,025,823	-	3	62	92.47	-2.71	0.92	0.988744
11002	dm3.chr3R	18,028,110 – 18,028,213	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15118	18,028,110 – 18,028,213	-	5	111	73.15	-1.82	0.65	0.968836
11004	dm3.chr3R	18,038,571 – 18,038,674	- - CDS="CDS;ID=CDS_FBgn0038934:2_249;Name=Gld2-cds;Parent=FBtr0305038;parent_type=mRNA" - - - - -	15120	18,038,571 – 18,038,674	-	6	112	69.91	-1.44	0.58	0.954912
11005	dm3.chr3R	18,047,104 – 18,047,223	- - - - - - - -	15121	18,047,104 – 18,047,223	+	7	119	79.97	-2.23	0.58	0.943858
11006	dm3.chr3R	18,049,043 – 18,049,133	- - - - - - - -	15123	18,049,043 – 18,049,133	-	5	104	65.55	-1.70	0.48	0.919453
11008	dm3.chr3R	18,057,214 – 18,057,313	- - - - - - - -	15125	18,057,214 – 18,057,313	-	7	112	58.62	-2.37	0.21	0.930269
11012	dm3.chr3R	18,077,464 – 18,077,556	- - - - - - - -	15130	18,077,464 – 18,077,556	-	7	100	83.14	-2.66	0.65	0.976939
11015	dm3.chr3R	18,087,413 – 18,087,548	- - - - - - - -	15133	18,087,413 – 18,087,510	+	6	100	80.64	-2.49	0.53	0.919440
11015	dm3.chr3R	18,087,413 – 18,087,548	- - - - - - - -	15134	18,087,445 – 18,087,548	+	7	106	72.84	-2.72	0.40	0.988294
11020	dm3.chr3R	18,110,826 – 18,110,922	- - - intron="intron;ID=intron_FBgn0051163:11_FBgn0051163:13;Name=SKIP-in;Parent=FBtr0084197,FBtr0301028,FBtr0305036;parent_type=mRNA" - - - -	15141	18,110,826 – 18,110,922	-	9	119	75.73	-2.32	0.50	0.956212
11022	dm3.chr3R	18,131,642 – 18,131,779	- - - - - - - -	15144	18,131,642 – 18,131,751	-	10	114	77.03	-2.05	0.68	0.983969
11022	dm3.chr3R	18,131,642 – 18,131,779	- - - - - - - -	15145	18,131,678 – 18,131,779	-	10	110	75.11	-2.96	0.71	0.999218
11025	dm3.chr3R	18,139,727 – 18,139,819	- - - intron="intron;ID=intron_FBgn0085406:3_FBgn0085406:2;Name=CG34377-in;Parent=FBtr0112610;parent_type=mRNA" - - - -	15148	18,139,727 – 18,139,819	-	6	93	85.09	-2.12	0.83	0.969140
11026	dm3.chr3R	18,139,899 – 18,140,002	- - - intron="intron;ID=intron_FBgn0085406:3_FBgn0085406:2;Name=CG34377-in;Parent=FBtr0112610;parent_type=mRNA" - - - -	15150	18,139,904 – 18,140,002	-	7	102	70.41	-1.66	0.46	0.937758
11027	dm3.chr3R	18,148,737 – 18,148,829	- - - - - - - -	15151	18,148,737 – 18,148,829	+	7	117	67.42	-2.68	0.46	0.996784
11031	dm3.chr3R	18,170,201 – 18,170,293	- - - - - - - -	15156	18,170,201 – 18,170,293	+	12	108	72.80	-2.65	0.60	0.999058
11032	dm3.chr3R	18,170,592 – 18,170,707	- - - - - - - -	15158	18,170,592 – 18,170,707	+	8	132	75.75	-2.57	0.41	0.938185
11034	dm3.chr3R	18,184,258 – 18,184,357	- - CDS="CDS;ID=CDS_CG7073:4_90;Name=sar1-cds;Parent=FBtr0084206,FBtr0084207,FBtr0084208,FBtr0084209,FBtr0084210;parent_type=mRNA" - - - - -	15160	18,184,258 – 18,184,357	+	14	116	72.09	-0.82	0.63	0.907289
11035	dm3.chr3R	18,185,204 – 18,185,294	- - - - - - - -	15161	18,185,204 – 18,185,294	+	10	116	62.37	-1.11	0.51	0.966634
11037	dm3.chr3R	18,201,571 – 18,201,677	- - - - - - - -	15163	18,201,571 – 18,201,671	-	4	100	88.00	-2.74	0.68	0.924825
11038	dm3.chr3R	18,222,246 – 18,222,346	FBnoncoding="tRNA;ID=FBtr0084222;Name=tRNA:CR31165-RA;Parent=FBgn0051165;Alias=CR31165-RA;Dbxref=FlyBase_Annotation_IDs:CR31165-RA;score_text=Weakly" tRNAscann="Ser_chr3R_trna32" - - "Rfam_10.0=RF00005;tRNA;ABAV01026808.1/8968-9050\|2.8e-32" "Noncode_2.0=n202744_u198018_AK082357_mRNAlike\|1.8e-33" "unique_Noncode_2.0=u198018_mRNAlike\|1.6e-33" -	15165	18,222,246 – 18,222,346	+	13	102	83.31	-1.92	0.94	0.989470
11038	dm3.chr3R	18,222,246 – 18,222,346		15166	18,222,246 – 18,222,346	-	13	102	83.31	-1.74	0.99	0.986644
11044	dm3.chr3R	18,294,713 – 18,294,818	- - - intron="intron;ID=intron_FBgn0038975:1_FBgn0038975:2;Name=Nrx-1-in;Parent=FBtr0084256,FBtr0301485;parent_type=mRNA" - - - -	15173	18,294,713 – 18,294,818	+	9	119	73.01	-1.98	0.44	0.943232
11044	dm3.chr3R	18,294,713 – 18,294,818		15174	18,294,713 – 18,294,818	-	9	119	73.01	-1.76	0.45	0.901783
11046	dm3.chr3R	18,301,119 – 18,301,190	- - - intron="intron;ID=intron_FBgn0038975:9_FBgn0038975:10;Name=Nrx-1-in;Parent=FBtr0301485;parent_type=mRNA" - - - -	15177	18,301,119 – 18,301,190	+	8	76	72.09	-1.13	0.65	0.935001
11048	dm3.chr3R	18,307,527 – 18,307,634	- - - intron="intron;ID=intron_FBgn0038975:14_FBgn0038975:15;Name=Nrx-1-in;Parent=FBtr0084256,FBtr0301485;parent_type=mRNA" - - - -	15179	18,307,527 – 18,307,634	+	11	119	89.41	-1.50	0.98	0.951210
11052	dm3.chr3R	18,326,834 – 18,326,961	- - - intron="intron;ID=intron_FBgn0038980:1_FBgn0038980:2;Name=oa2-in;Parent=FBtr0084260,FBtr0100322,FBtr0301484;parent_type=mRNA" - - - -	15183	18,326,834 – 18,326,961	-	7	136	71.55	-2.82	0.35	0.976144
11053	dm3.chr3R	18,326,993 – 18,327,095	- - - intron="intron;ID=intron_FBgn0038980:1_FBgn0038980:2;Name=oa2-in;Parent=FBtr0084260,FBtr0100322,FBtr0301484;parent_type=mRNA" - - - -	15184	18,326,993 – 18,327,095	+	9	111	72.47	-1.94	0.41	0.904673
11060	dm3.chr3R	18,388,447 – 18,388,537	- - - - - - - -	15192	18,388,447 – 18,388,537	+	3	90	99.26	-2.37	0.98	0.980773
11060	dm3.chr3R	18,388,447 – 18,388,537	- - - - - - - -	15193	18,388,447 – 18,388,537	-	3	90	99.26	-1.70	1.00	0.936387
11062	dm3.chr3R	18,401,065 – 18,401,170	- - - intron="intron;ID=intron_CG33110:5_CG33110:6;Name=CG33110-in;Parent=FBtr0084264;parent_type=mRNA" - - - -	15195	18,401,065 – 18,401,170	-	6	106	76.50	-2.29	0.66	0.989575
11063	dm3.chr3R	18,418,918 – 18,419,014	- - - intron="intron;ID=intron_FBgn0051158:1_FBgn0051158:2;Name=CG31158-in;Parent=FBtr0113395,FBtr0113396,FBtr0302187;parent_type=mRNA" - - - -	15196	18,418,918 – 18,419,014	+	11	108	79.76	-1.56	0.73	0.922610
11067	dm3.chr3R	18,425,627 – 18,425,743	- - CDS="CDS;ID=CDS_FBgn0051158:4_224;Name=CG31158-cds;Parent=FBtr0302187;parent_type=mRNA" - - - - -	15202	18,425,642 – 18,425,743	+	9	112	67.38	-1.26	0.57	0.971445
11068	dm3.chr3R	18,425,867 – 18,425,960	- - CDS="CDS;ID=CDS_FBgn0051158:4_224;Name=CG31158-cds;Parent=FBtr0302187;parent_type=mRNA" - - - - -	15203	18,425,867 – 18,425,960	-	8	105	81.98	-2.66	0.60	0.976406
11070	dm3.chr3R	18,430,505 – 18,430,596	- - - - - - - -	15205	18,430,505 – 18,430,596	+	12	101	73.33	-1.80	0.79	0.997256
11072	dm3.chr3R	18,465,012 – 18,465,126	- - - - - - - -	15208	18,465,012 – 18,465,126	+	10	135	56.63	-2.59	0.19	0.972091
11073	dm3.chr3R	18,483,223 – 18,483,316	- - - intron="intron;ID=intron_FBgn0261572:3_FBgn0261572:4;Name=CG42686-in;Parent=FBtr0302858;parent_type=mRNA" - - - -	15209	18,483,223 – 18,483,316	+	7	98	64.52	-2.48	0.39	0.997210
11074	dm3.chr3R	18,490,721 – 18,490,820	- - CDS="CDS;ID=CDS_FBgn0261572:6_213;Name=CG42686-cds;Parent=FBtr0302858;parent_type=mRNA" - - - - -	15210	18,490,721 – 18,490,820	+	12	111	74.96	-1.74	0.56	0.964520
11078	dm3.chr3R	18,576,499 – 18,576,629	- - - - - - - -	15214	18,576,499 – 18,576,615	+	6	116	76.32	-2.69	0.47	0.983147
11078	dm3.chr3R	18,576,499 – 18,576,629	- - - - - - - -	15215	18,576,499 – 18,576,615	-	6	116	76.32	-2.71	0.52	0.992153
11079	dm3.chr3R	18,595,200 – 18,595,291	- - CDS="CDS;ID=CDS_FBgn0262538:1_252;Name=CG43092-cds;Parent=FBtr0304880;parent_type=mRNA" - - - - -	15217	18,595,200 – 18,595,291	-	6	120	67.28	-1.33	0.59	0.978313
11084	dm3.chr3R	18,609,520 – 18,609,612	- - - - - - - -	15223	18,609,520 – 18,609,612	-	7	109	71.48	-1.37	0.62	0.945869
11086	dm3.chr3R	18,641,393 – 18,641,486	- - CDS="CDS;ID=CDS_FBgn0039028:1_189;Name=CG13840-cds;Parent=FBtr0301686;parent_type=mRNA" - - - - -	15227	18,641,393 – 18,641,486	-	6	108	79.91	-2.47	0.64	0.972444
11093	dm3.chr3R	18,674,960 – 18,675,059	- - - - - - - -	15238	18,674,960 – 18,675,059	+	9	119	68.73	-1.41	0.64	0.980208
11094	dm3.chr3R	18,676,180 – 18,676,281	- - - - - - - -	15239	18,676,180 – 18,676,281	-	7	108	60.75	-1.69	0.38	0.974320
11096	dm3.chr3R	18,677,033 – 18,677,132	- - - - - - - -	15241	18,677,033 – 18,677,132	+	6	100	70.04	-2.09	0.60	0.994047
11098	dm3.chr3R	18,697,709 – 18,697,835	- - - - - - - -	15243	18,697,709 – 18,697,809	-	6	102	76.76	-2.66	0.47	0.965527
11098	dm3.chr3R	18,697,709 – 18,697,835	- - - - - - - -	15244	18,697,742 – 18,697,835	+	5	97	79.67	-2.37	0.63	0.961194
11102	dm3.chr3R	18,706,492 – 18,706,582	- - - - - - - -	15249	18,706,492 – 18,706,582	-	7	115	62.56	-1.72	0.46	0.979770
11103	dm3.chr3R	18,712,300 – 18,712,392	- - - - - - - -	15250	18,712,300 – 18,712,392	-	10	102	68.22	-1.19	0.52	0.940796
11104	dm3.chr3R	18,712,422 – 18,712,509	- - - - - - - -	15251	18,712,422 – 18,712,509	+	6	88	70.36	-2.27	0.48	0.990313
11105	dm3.chr3R	18,715,820 – 18,715,885	- - - - - - - -	15253	18,715,820 – 18,715,885	-	7	65	77.60	-1.78	0.64	0.939327
11106	dm3.chr3R	18,717,470 – 18,717,544	- - - - - - - -	15254	18,717,470 – 18,717,544	+	6	81	71.56	-2.41	0.72	0.998307
11109	dm3.chr3R	18,737,053 – 18,737,158	- - - intron="intron;ID=intron_CG6669:1_CG6669:2;Name=klg-in;Parent=FBtr0084337;parent_type=mRNA" - - - -	15259	18,737,053 – 18,737,158	+	9	109	71.71	-1.54	0.48	0.941075
11110	dm3.chr3R	18,741,703 – 18,741,828	- - - intron="intron;ID=intron_CG6669:2_CG6669:3;Name=klg-in;Parent=FBtr0084337;parent_type=mRNA" - - - -	15260	18,741,703 – 18,741,803	+	6	105	88.46	-2.41	0.73	0.913756
11110	dm3.chr3R	18,741,703 – 18,741,828		15261	18,741,703 – 18,741,803	-	6	105	88.46	-3.61	0.81	0.997827
11113	dm3.chr3R	18,751,643 – 18,751,733	- - - - - - - -	15266	18,751,643 – 18,751,733	-	7	107	67.51	-0.96	0.60	0.933675
11115	dm3.chr3R	18,756,200 – 18,756,384	- - - - - - - -	15268	18,756,200 – 18,756,311	+	7	118	71.26	-1.98	0.54	0.985638
				15270	18,756,232 – 18,756,346	+	6	118	89.54	-2.75	0.78	0.977294
				15271	18,756,232 – 18,756,346	-	6	118	89.54	-2.59	0.82	0.977537
				15272	18,756,271 – 18,756,384	-	6	118	80.86	-2.11	0.66	0.940355
11118	dm3.chr3R	18,770,314 – 18,770,387	- - - - - - - -	15277	18,770,314 – 18,770,387	-	6	80	73.87	-2.12	0.62	0.990690
11123	dm3.chr3R	18,781,309 – 18,781,425	- - - intron="intron;ID=intron_CG6669:5_CG6669:6;Name=klg-in;Parent=FBtr0084337;parent_type=mRNA" - - - -	15285	18,781,309 – 18,781,425	-	6	117	94.04	-4.21	0.80	0.997922
11128	dm3.chr3R	18,816,546 – 18,816,643	- - - - - - - -	15293	18,816,546 – 18,816,643	-	7	98	59.40	-1.47	0.34	0.907879
11130	dm3.chr3R	18,841,788 – 18,841,926	- - - - - - - -	15295	18,841,788 – 18,841,899	+	5	111	94.26	-2.33	0.90	0.961541
				15297	18,841,826 – 18,841,926	+	6	104	75.00	-1.56	0.87	0.982994
				15298	18,841,826 – 18,841,926	-	6	104	75.00	-2.21	0.75	0.995690
11132	dm3.chr3R	18,848,228 – 18,848,287	- - - intron="intron;ID=intron_FBgn0039039:2_FBgn0039039:1;Name=lmd-in;Parent=FBtr0084364;parent_type=mRNA" - - - -	15300	18,848,228 – 18,848,287	+	6	66	76.19	-1.67	0.72	0.953134
11133	dm3.chr3R	18,848,992 – 18,849,103	- - - intron="intron;ID=intron_FBgn0039039:2_FBgn0039039:1;Name=lmd-in;Parent=FBtr0084364;parent_type=mRNA" - - - -	15302	18,848,992 – 18,849,103	+	3	112	82.39	-3.40	0.82	0.997690
11134	dm3.chr3R	18,853,175 – 18,853,304	- - - - - - - -	15303	18,853,175 – 18,853,304	+	7	131	74.81	-2.24	0.56	0.985588
11139	dm3.chr3R	18,910,048 – 18,910,138	- - - intron="intron;ID=intron_FBgn0039054:12_FBgn0039054:11;Name=CG13830-in;Parent=FBtr0302022,FBtr0302023;parent_type=mRNA" - - - -	15309	18,910,048 – 18,910,138	-	12	119	75.98	-2.00	0.57	0.950791
11147	dm3.chr3R	18,997,388 – 18,997,481	- - - - - - - -	15317	18,997,388 – 18,997,481	+	7	114	68.23	-2.09	0.65	0.997719
11147	dm3.chr3R	18,997,388 – 18,997,481	- - - - - - - -	15318	18,997,388 – 18,997,481	-	7	114	68.23	-1.33	0.59	0.955523
11149	dm3.chr3R	19,020,283 – 19,020,387	- - - intron="intron;ID=intron_CG17894:7_CG17894:8;Name=cnc-in;Parent=FBtr0084392,FBtr0084393;parent_type=mRNA" - - - -	15321	19,020,283 – 19,020,387	-	6	114	85.29	-2.74	0.78	0.989622
11152	dm3.chr3R	19,071,994 – 19,072,088	- - - intron="intron;ID=intron_FBgn0039064:15_FBgn0039064:14;Name=CG4467-in;Parent=FBtr0110801;parent_type=mRNA" - - - -	15324	19,071,994 – 19,072,088	-	10	108	69.07	-1.78	0.40	0.939862
11154	dm3.chr3R	19,080,227 – 19,080,393	- - - - - - - -	15326	19,080,227 – 19,080,393	+	6	168	70.80	-1.85	0.46	0.939686
11155	dm3.chr3R	19,088,828 – 19,088,925	- - - - - - - -	15327	19,088,828 – 19,088,925	-	5	98	95.17	-3.79	0.85	0.996353
11157	dm3.chr3R	19,097,835 – 19,097,932	- - - intron="intron;ID=intron_FBgn0004882:15_FBgn0004882:14;Name=orb-in;Parent=FBtr0084384;parent_type=mRNA" - - - -	15329	19,097,835 – 19,097,932	+	9	110	84.40	-1.75	0.83	0.935841
11158	dm3.chr3R	19,098,885 – 19,098,980	- - - intron="intron;ID=intron_FBgn0004882:15_FBgn0004882:14;Name=orb-in;Parent=FBtr0084384;parent_type=mRNA" - - - -	15330	19,098,885 – 19,098,980	-	7	106	60.59	-1.44	0.35	0.905617
11160	dm3.chr3R	19,106,519 – 19,106,592	- - - - - - - -	15332	19,106,519 – 19,106,592	+	6	78	76.88	-2.92	0.37	0.930355
11168	dm3.chr3R	19,202,108 – 19,202,201	- - - - - - - -	15342	19,202,108 – 19,202,201	+	7	104	60.85	-0.94	0.52	0.913581
11169	dm3.chr3R	19,203,957 – 19,204,061	- - - - - - - -	15343	19,203,957 – 19,204,061	+	12	116	69.17	-1.41	0.49	0.934159
11175	dm3.chr3R	19,225,684 – 19,225,784	- - - - - - - -	15350	19,225,684 – 19,225,784	+	7	116	86.29	-3.56	0.69	0.996026
11176	dm3.chr3R	19,226,825 – 19,226,883	- - - - - - - -	15351	19,226,825 – 19,226,883	+	5	60	65.14	-2.40	0.53	0.998743
11178	dm3.chr3R	19,237,587 – 19,237,742	- - CDS="CDS;ID=CDS_FBgn0039078:1_229;Name=CG4374-cds;Parent=FBtr0303342;parent_type=mRNA" - - - - -	15353	19,237,587 – 19,237,686	-	12	111	67.31	-1.51	0.56	0.995979
11178	dm3.chr3R	19,237,587 – 19,237,742		15355	19,237,647 – 19,237,742	-	13	96	83.63	-2.20	0.58	0.907430
11184	dm3.chr3R	19,271,452 – 19,271,519	- - - intron="intron;ID=intron_FBgn0039078:3_FBgn0039078:2;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15362	19,271,452 – 19,271,519	+	4	69	57.53	-2.14	0.45	0.995691
11185	dm3.chr3R	19,274,224 – 19,274,336	- - - intron="intron;ID=intron_FBgn0039078:3_FBgn0039078:2;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15363	19,274,224 – 19,274,336	+	5	118	89.99	-2.33	0.80	0.925837
11186	dm3.chr3R	19,277,965 – 19,278,071	- - - intron="intron;ID=intron_FBgn0039078:3_FBgn0039078:2;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15364	19,277,965 – 19,278,071	+	8	113	80.22	-2.44	0.58	0.966742
11186	dm3.chr3R	19,277,965 – 19,278,071		15365	19,277,965 – 19,278,071	-	8	113	80.22	-3.48	0.37	0.976989
11187	dm3.chr3R	19,282,890 – 19,283,029	- - - intron="intron;ID=intron_FBgn0039078:4_FBgn0039078:3;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15366	19,282,890 – 19,282,991	-	10	118	70.32	-2.83	0.29	0.945829
11188	dm3.chr3R	19,283,241 – 19,283,399	- - - intron="intron;ID=intron_FBgn0039078:4_FBgn0039078:3;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15369	19,283,271 – 19,283,363	+	10	111	74.81	-2.46	0.44	0.956042
11190	dm3.chr3R	19,286,300 – 19,286,392	- - - intron="intron;ID=intron_FBgn0039078:4_FBgn0039078:3;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15374	19,286,300 – 19,286,392	-	7	106	62.75	-2.05	0.31	0.905467
11197	dm3.chr3R	19,320,849 – 19,320,953	- - - - - - - -	15382	19,320,849 – 19,320,941	+	11	113	88.25	-3.24	0.81	0.996455
				15383	19,320,849 – 19,320,941	-	11	113	88.25	-3.45	0.92	0.998484
				15384	19,320,861 – 19,320,953	+	12	120	92.26	-3.86	0.80	0.997411
				15385	19,320,861 – 19,320,953	-	12	120	92.26	-3.75	0.90	0.998307
11198	dm3.chr3R	19,322,135 – 19,322,245	- - - - - - - -	15386	19,322,135 – 19,322,237	+	4	102	84.97	-3.97	0.84	0.999004
				15388	19,322,143 – 19,322,245	+	7	103	72.78	-3.53	0.55	0.999719
				15389	19,322,143 – 19,322,245	-	7	103	72.78	-2.18	0.60	0.994250
11199	dm3.chr3R	19,330,379 – 19,330,517	- - - - - - - -	15391	19,330,379 – 19,330,488	-	8	120	77.68	-3.20	0.55	0.997405
				15392	19,330,412 – 19,330,514	-	8	120	80.32	-2.84	0.80	0.996946
				15393	19,330,415 – 19,330,517	-	8	119	81.88	-2.19	0.80	0.980990
11201	dm3.chr3R	19,344,577 – 19,344,678	- - - intron="intron;ID=intron_FBgn0039081:7_FBgn0039081:6;Name=Irk2-in;Parent=FBtr0084425;parent_type=mRNA" - - - -	15395	19,344,577 – 19,344,678	-	6	116	74.09	-2.21	0.56	0.974791
11203	dm3.chr3R	19,377,265 – 19,377,370	- - - - - - - -	15397	19,377,265 – 19,377,370	-	3	110	90.30	-2.41	0.92	0.981940
11205	dm3.chr3R	19,388,226 – 19,388,336	- - - intron="intron;ID=intron_FBgn0039089:1_FBgn0039089:2;Name=beat-IV-in;Parent=FBtr0084433;parent_type=mRNA" - - - -	15399	19,388,226 – 19,388,336	-	4	110	87.27	-2.51	0.82	0.975437
11212	dm3.chr3R	19,447,507 – 19,447,563	- - - intron="intron;ID=intron_FBgn0051145:11_FBgn0051145:10;Name=CG31145-in;Parent=FBtr0084479,FBtr0084480,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15409	19,447,507 – 19,447,563	-	5	57	58.41	-1.18	0.60	0.990559
11213	dm3.chr3R	19,448,509 – 19,448,573	- - - intron="intron;ID=intron_FBgn0051145:12_FBgn0051145:11;Name=CG31145-in;Parent=FBtr0084479,FBtr0084480,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15410	19,448,509 – 19,448,573	-	9	68	80.37	-2.12	0.57	0.918196
11215	dm3.chr3R	19,451,331 – 19,451,431	- - - intron="intron;ID=intron_FBgn0051145:12_FBgn0051145:11;Name=CG31145-in;Parent=FBtr0084479,FBtr0084480,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15412	19,451,331 – 19,451,431	-	11	113	76.78	-2.35	0.51	0.977429
11216	dm3.chr3R	19,459,254 – 19,459,339	- - - intron="intron;ID=intron_FBgn0051145:15_FBgn0051145:14;Name=CG31145-in;Parent=FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15413	19,459,254 – 19,459,339	-	6	91	78.47	-1.76	0.66	0.902484
11218	dm3.chr3R	19,463,388 – 19,463,478	- - - intron="intron;ID=intron_FBgn0051145:16_FBgn0051145:15;Name=CG31145-in;Parent=FBtr0084479,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15415	19,463,388 – 19,463,478	-	5	90	81.34	-2.88	0.63	0.984594
11223	dm3.chr3R	19,534,210 – 19,534,311	- - - - - - - -	15420	19,534,210 – 19,534,304	+	12	104	74.84	-1.99	0.57	0.982188
11223	dm3.chr3R	19,534,210 – 19,534,311	- - - - - - - -	15421	19,534,217 – 19,534,311	+	12	105	75.34	-1.56	0.55	0.919069
11225	dm3.chr3R	19,536,610 – 19,536,712	- - - intron="intron;ID=intron_FBgn0039106:2_FBgn0039106:3;Name=CG10301-in;Parent=FBtr0114504;parent_type=mRNA" - - - -	15424	19,536,610 – 19,536,712	-	4	102	76.67	-2.85	0.48	0.952996
11226	dm3.chr3R	19,555,902 – 19,555,996	FBnoncoding="ncRNA;ID=FBtr0091662;Name=RNaseMRP:RNA-RA;Parent=FBgn0065098;Alias=snmRNA:342-RB,snmRNA:342-RA;Dbxref=FlyBase_Annotation_IDs:CR33682-RA,REFSEQ:NR_002501;score_text=Weakly" - - intron="intron;ID=intron_CG10365:3_CG10365:4;Name=CG10365-in;Parent=FBtr0084446,FBtr0084447,FBtr0084448,FBtr0084449;parent_type=mRNA" "Rfam_10.0=RF00030;RNase_MRP;AC008223.4/123485-123839\|3.1e-47" "Noncode_2.0=n3553_u3180_AJ544051_snmRNA_Drosophila\|3.1e-47" "unique_Noncode_2.0=u3180_snmRNA_Drosophila\|2.7e-47" -	15425	19,555,902 – 19,555,996	-	12	116	71.13	-3.22	0.63	0.999776
11233	dm3.chr3R	19,653,249 – 19,653,364	- - - intron="intron;ID=intron_FBgn0085384:1_FBgn0085384:2;Name=CG34355-in;Parent=FBtr0273215,FBtr0273216;parent_type=mRNA" - - - -	15432	19,653,249 – 19,653,364	+	12	120	92.63	-2.28	0.88	0.964793
11237	dm3.chr3R	19,685,160 – 19,685,280	FBnoncoding="snRNA;ID=FBtr0084528;Name=snRNA:U1:95Ca-RA;Parent=FBgn0004185;Alias=CR31341-RA;Dbxref=FlyBase_Annotation_IDs:CR31341-RA,REFSEQ:NR_002078;score_text=Weakly" - - - "Rfam_10.0=RF00003;U1;AY187768.1/1130-1294\|2.6e-45" "Noncode_2.0=n5572_u344_X53544_snRNA_Drosophila\|6.5e-46" "unique_Noncode_2.0=u3858_snRNA_Drosophila\|5.7e-46" -	15437	19,685,160 – 19,685,280	+	10	131	83.24	-2.21	0.82	0.987526
11237	dm3.chr3R	19,685,160 – 19,685,280		15438	19,685,160 – 19,685,280	-	10	131	83.24	-1.40	0.85	0.905682
11242	dm3.chr3R	19,720,673 – 19,720,795	- - - - - - - -	15444	19,720,673 – 19,720,776	-	13	115	66.60	-1.77	0.50	0.993654
11242	dm3.chr3R	19,720,673 – 19,720,795	- - - - - - - -	15445	19,720,704 – 19,720,795	+	6	101	70.98	-2.35	0.49	0.985982
11245	dm3.chr3R	19,736,123 – 19,736,191	- - - intron="intron;ID=intron_FBgn0016754:8_FBgn0016754:7;Name=sba-in;Parent=FBtr0112888,FBtr0112889;parent_type=mRNA" - - - -	15448	19,736,123 – 19,736,191	-	11	78	61.69	-2.61	0.74	0.999890
11246	dm3.chr3R	19,745,876 – 19,745,967	- - CDS="CDS;ID=CDS_FBgn0016754:9_138;Name=sba-cds;Parent=FBtr0112889;parent_type=mRNA" - - - - -	15449	19,745,876 – 19,745,967	+	6	100	67.94	-3.14	0.46	0.999409
11250	dm3.chr3R	19,760,077 – 19,760,242	- - - intron="intron;ID=intron_FBgn0039130:3_FBgn0039130:4;Name=CG5854-in;Parent=FBtr0084494;parent_type=mRNA" - - - -	15458	19,760,077 – 19,760,242	+	5	184	67.30	-2.62	0.43	0.992475
11250	dm3.chr3R	19,760,077 – 19,760,242		15459	19,760,077 – 19,760,242	-	5	184	67.30	-3.88	0.43	0.999729
11253	dm3.chr3R	19,799,878 – 19,799,972	- - CDS="CDS;ID=CDS_FBgn0051140:12_249;Name=CG31140-cds;Parent=FBtr0084497,FBtr0113392;parent_type=mRNA" - - - - -	15462	19,799,878 – 19,799,972	+	12	118	59.57	-2.05	0.28	0.940039
11256	dm3.chr3R	19,809,209 – 19,809,408	- - - - - - - -	15465	19,809,209 – 19,809,307	+	11	120	68.28	-4.42	0.54	0.999966
11256	dm3.chr3R	19,809,209 – 19,809,408	- - - - - - - -	15466	19,809,209 – 19,809,307	-	11	120	68.28	-2.89	0.34	0.992781
11257	dm3.chr3R	19,809,436 – 19,809,530	- - - - - - - -	15468	19,809,436 – 19,809,530	+	8	105	72.43	-0.77	0.79	0.919567
11259	dm3.chr3R	19,827,750 – 19,827,841	- - - intron="intron;ID=intron_FBgn0020647:6_FBgn0020647:5;Name=KrT95D-in;Parent=FBtr0084506,FBtr0084507,FBtr0301418,FBtr0301419;parent_type=mRNA" - - - -	15471	19,827,750 – 19,827,841	-	5	109	65.58	-1.47	0.59	0.964285
11260	dm3.chr3R	19,828,767 – 19,828,859	- - - intron="intron;ID=intron_FBgn0020647:7_FBgn0020647:6;Name=KrT95D-in;Parent=FBtr0084506,FBtr0084507,FBtr0301418,FBtr0301419;parent_type=mRNA" - - - -	15472	19,828,767 – 19,828,859	-	5	95	70.00	-1.80	0.48	0.923087
11261	dm3.chr3R	19,830,496 – 19,830,597	- - - intron="intron;ID=intron_FBgn0020647:9_FBgn0020647:7;Name=KrT95D-in;Parent=FBtr0301419;parent_type=mRNA" - - - -	15474	19,830,496 – 19,830,597	-	5	112	84.86	-2.86	0.68	0.974207
11264	dm3.chr3R	19,836,078 – 19,836,264	- - - - - - - -	15478	19,836,112 – 19,836,210	+	5	99	91.26	-3.67	0.99	0.998855
				15479	19,836,112 – 19,836,210	-	5	99	91.26	-3.07	0.94	0.996826
				15480	19,836,132 – 19,836,234	+	4	114	83.56	-3.50	0.84	0.998312
				15481	19,836,132 – 19,836,234	-	4	114	83.56	-2.50	0.86	0.989174
11266	dm3.chr3R	19,846,049 – 19,846,143	- - - intron="intron;ID=intron_FBgn0020647:14_FBgn0020647:12;Name=KrT95D-in;Parent=FBtr0084507;parent_type=mRNA" - - - -	15484	19,846,049 – 19,846,143	-	4	94	74.73	-2.04	0.64	0.961600
11269	dm3.chr3R	19,853,506 – 19,853,619	- - - intron="intron;ID=intron_FBgn0020647:14_FBgn0020647:12;Name=KrT95D-in;Parent=FBtr0084507;parent_type=mRNA" - - - -	15487	19,853,506 – 19,853,619	+	5	120	87.63	-1.99	0.85	0.924383
11270	dm3.chr3R	19,897,914 – 19,897,964	- - - intron="intron;ID=intron_FBgn0053100:5_FBgn0053100:4;Name=4EHP-in;Parent=FBtr0300475;parent_type=mRNA" - - - -	15488	19,897,914 – 19,897,964	-	3	51	55.26	-1.65	0.60	0.993943
11272	dm3.chr3R	19,930,077 – 19,930,133	- - CDS="CDS;ID=CDS_FBgn0013343:3_224;Name=Syx1A-cds;Parent=FBtr0303161;parent_type=mRNA" - - - - -	15491	19,930,077 – 19,930,133	-	14	59	80.29	-1.75	0.64	0.912533
11273	dm3.chr3R	19,945,989 – 19,946,067	- - - - - - - -	15492	19,945,989 – 19,946,067	+	11	85	71.54	-0.89	0.89	0.967864
11276	dm3.chr3R	19,952,525 – 19,952,627	- - - intron="intron;ID=intron_FBgn0039152:7_FBgn0039152:8;Name=CG6129-in;Parent=FBtr0304161;parent_type=mRNA" - - - -	15497	19,952,525 – 19,952,627	-	3	111	69.11	-1.84	0.64	0.917808
11277	dm3.chr3R	19,953,541 – 19,953,636	- - - - - - - -	15498	19,953,541 – 19,953,636	+	12	115	71.33	-1.96	0.57	0.990428
11278	dm3.chr3R	19,953,673 – 19,953,767	- - - - - - - -	15499	19,953,673 – 19,953,767	+	12	118	70.04	-1.53	0.66	0.985898
11278	dm3.chr3R	19,953,673 – 19,953,767	- - - - - - - -	15500	19,953,673 – 19,953,767	-	12	118	70.04	-1.71	0.53	0.967940
11279	dm3.chr3R	19,964,185 – 19,964,278	- - - intron="intron;ID=intron_FBgn0039154:1_FBgn0039154:2;Name=Npc2f-in;Parent=FBtr0084548;parent_type=mRNA" - - - -	15501	19,964,185 – 19,964,278	-	6	99	69.05	-2.08	0.41	0.938944
11281	dm3.chr3R	19,974,568 – 19,974,623	- - CDS="CDS;ID=CDS_FBgn0051133:1_94;Name=Slimp-cds;Parent=FBtr0084583;parent_type=mRNA" - - - - -	15503	19,974,568 – 19,974,623	+	8	56	68.78	-1.54	0.53	0.982003
11282	dm3.chr3R	19,978,635 – 19,978,692	- - - intron="intron;ID=intron_FBgn0039156:1_FBgn0039156:2;Name=CG6178-in;Parent=FBtr0084550;parent_type=mRNA" - - - -	15504	19,978,635 – 19,978,692	+	5	57	90.51	-1.67	0.92	0.904031
11282	dm3.chr3R	19,978,635 – 19,978,692		15505	19,978,635 – 19,978,692	-	5	57	90.51	-1.70	0.96	0.950287
11283	dm3.chr3R	19,982,951 – 19,983,043	- - CDS="CDS;ID=CDS_CG5501:26_12;Name=Myo95E-cds;Parent=FBtr0100519;parent_type=mRNA" - - - - -	15506	19,982,951 – 19,983,043	-	12	115	81.26	-2.15	0.82	0.986597
11285	dm3.chr3R	19,996,964 – 19,997,029	- - - - - - - -	15508	19,996,964 – 19,997,029	+	7	75	60.84	-1.37	0.48	0.968586
11286	dm3.chr3R	20,010,033 – 20,010,160	- - - - - - - -	15509	20,010,033 – 20,010,142	+	6	116	67.97	-1.81	0.50	0.977484
11287	dm3.chr3R	20,025,962 – 20,026,015	- - - intron="intron;ID=intron_CG31137:12_CG31137:6;Name=twin-in;Parent=FBtr0084570;parent_type=mRNA" - - - -	15511	20,025,962 – 20,026,015	+	6	61	72.50	-2.66	0.49	0.992820
11287	dm3.chr3R	20,025,962 – 20,026,015		15512	20,025,962 – 20,026,015	-	6	61	72.50	-1.90	0.50	0.921670
11288	dm3.chr3R	20,027,991 – 20,028,101	- - - - - - - -	15513	20,027,991 – 20,028,101	+	5	118	87.00	-2.01	0.82	0.909853
11289	dm3.chr3R	20,051,801 – 20,051,892	- - CDS="CDS;ID=CDS_FBgn0039169:1_247;Name=Spps-cds;Parent=FBtr0084565;parent_type=mRNA" - - - - -	15514	20,051,801 – 20,051,892	+	4	91	99.45	-1.63	1.01	0.937935
11289	dm3.chr3R	20,051,801 – 20,051,892		15515	20,051,801 – 20,051,892	-	4	91	99.45	-1.68	0.99	0.916794
11293	dm3.chr3R	20,065,997 – 20,066,146	- - CDS="CDS;ID=CDS_FBgn0043884:13_249;Name=mask-cds;Parent=FBtr0305043;parent_type=mRNA" - - - - -	15519	20,065,997 – 20,066,112	-	13	119	63.71	-1.46	0.38	0.963894
11293	dm3.chr3R	20,065,997 – 20,066,146		15521	20,066,033 – 20,066,146	-	13	113	59.60	-1.36	0.34	0.939739
11295	dm3.chr3R	20,090,944 – 20,091,091	FBnoncoding="tRNA;ID=FBtr0084597;Name=tRNA:CR31130-RA;Parent=FBgn0051130;Alias=CR31130-RA;Dbxref=FlyBase_Annotation_IDs:CR31130-RA;score_text=Weakly" tRNAscann="Leu_chr3R_trna35" - - "Rfam_10.0=RF00005;tRNA;ABJB010959698.1/51-134\|4.2e-29" - - -	15524	20,090,974 – 20,091,091	+	13	122	81.53	-2.26	0.94	0.995143
11295	dm3.chr3R	20,090,944 – 20,091,091		15525	20,090,974 – 20,091,091	-	13	122	81.53	-1.39	0.85	0.948377
11300	dm3.chr3R	20,176,133 – 20,176,188	- - - intron="intron;ID=intron_FBgn0039187:3_FBgn0039187:4;Name=CG6454-in;Parent=FBtr0273323;parent_type=mRNA" - - - -	15531	20,176,133 – 20,176,188	-	6	59	79.88	-2.30	0.54	0.902923
11305	dm3.chr3R	20,225,092 – 20,225,197	- - - - - - - -	15541	20,225,092 – 20,225,190	-	4	98	80.60	-2.32	0.84	0.988354
				15542	20,225,093 – 20,225,197	+	5	104	76.06	-2.52	0.69	0.992912
				15543	20,225,093 – 20,225,197	-	5	104	76.06	-2.47	0.83	0.995889
11306	dm3.chr3R	20,227,327 – 20,227,470	- - - - - - - -	15544	20,227,327 – 20,227,447	-	13	121	81.59	-1.71	0.68	0.935313
11306	dm3.chr3R	20,227,327 – 20,227,470	- - - - - - - -	15546	20,227,350 – 20,227,470	-	13	121	86.02	-3.99	0.88	0.999253
11309	dm3.chr3R	20,257,730 – 20,257,856	- - - intron="intron;ID=intron_CG5610:2_CG5610:3;Name=nAcRalpha-96Aa-in;Parent=FBtr0084619;parent_type=mRNA" - - - -	15550	20,257,730 – 20,257,820	-	6	104	77.76	-3.35	0.61	0.998414
				15551	20,257,755 – 20,257,856	+	6	112	72.66	-3.18	0.42	0.995797
				15552	20,257,755 – 20,257,856	-	6	112	72.66	-3.34	0.47	0.998668
11312	dm3.chr3R	20,277,919 – 20,278,062	- - - - - - - -	15556	20,277,919 – 20,278,039	-	11	120	91.38	-2.68	0.84	0.982464
11312	dm3.chr3R	20,277,919 – 20,278,062	- - - - - - - -	15557	20,277,959 – 20,278,062	-	12	111	80.37	-1.92	0.84	0.988421
11314	dm3.chr3R	20,283,081 – 20,283,132	- - - - - - - -	15562	20,283,081 – 20,283,132	-	4	52	90.29	-2.09	0.90	0.953336
11315	dm3.chr3R	20,283,677 – 20,283,790	- - - - - - - -	15564	20,283,677 – 20,283,790	-	6	123	68.86	-2.04	0.51	0.988781
11318	dm3.chr3R	20,297,484 – 20,297,537	- - - - - - - -	15570	20,297,484 – 20,297,537	+	6	56	74.20	-2.65	0.37	0.933664
11322	dm3.chr3R	20,306,285 – 20,306,377	- - - - - - - -	15574	20,306,285 – 20,306,377	+	5	102	64.72	-1.20	0.62	0.959751
11323	dm3.chr3R	20,322,381 – 20,322,484	- - - - - - - -	15575	20,322,381 – 20,322,484	+	3	103	78.11	-2.53	0.68	0.962966
11325	dm3.chr3R	20,381,030 – 20,381,121	FBnoncoding="tRNA;ID=FBtr0084649;Name=tRNA:D:96A-RA;Parent=FBgn0011845;Dbxref=FlyBase_Annotation_IDs:CR31540-RA;score_text=Weakly" tRNAscann="Asp_chr3R_trna36" - intron="intron;ID=intron_FBgn0039208:11_FBgn0039208:12;Name=Esyt2-in;Parent=FBtr0084647,FBtr0084648,FBtr0306024;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010887279.1/1267-1338\|3.6e-25" - - -	15579	20,381,030 – 20,381,121	-	11	102	73.27	-0.95	0.68	0.922907
11326	dm3.chr3R	20,392,055 – 20,392,153	- - - intron="intron;ID=intron_FBgn0039209:6_FBgn0039209:5;Name=CG13624-in;Parent=FBtr0084675;parent_type=mRNA" - - - -	15580	20,392,055 – 20,392,153	+	5	99	89.89	-2.61	0.77	0.951356
11326	dm3.chr3R	20,392,055 – 20,392,153		15581	20,392,055 – 20,392,153	-	5	99	89.89	-2.80	0.81	0.982303
11327	dm3.chr3R	20,408,250 – 20,408,333	- - - - - - - -	15582	20,408,250 – 20,408,333	+	5	88	90.65	-2.37	0.92	0.983528
11340	dm3.chr3R	20,427,423 – 20,427,492	- - - intron="intron;ID=intron_FBgn0083077:3_FBgn0083077:4;Name=mld-in;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - -	15596	20,427,423 – 20,427,492	-	5	75	58.20	-1.24	0.43	0.929065
11344	dm3.chr3R	20,443,270 – 20,443,429	- - CDS="CDS;ID=CDS_FBgn0083077:4_243;Name=mld-cds;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - - -	15600	20,443,270 – 20,443,429	+	10	159	73.68	-2.80	0.53	0.999172
11345	dm3.chr3R	20,447,662 – 20,447,734	- - - intron="intron;ID=intron_FBgn0083077:6_FBgn0083077:7;Name=mld-in;Parent=FBtr0304913,FBtr0304914;parent_type=mRNA" - - - -	15602	20,447,662 – 20,447,734	+	5	74	90.01	-1.82	0.96	0.965863
11346	dm3.chr3R	20,449,635 – 20,449,688	- - - - - - - -	15603	20,449,635 – 20,449,688	+	4	56	68.50	-1.76	0.52	0.900790
11350	dm3.chr3R	20,467,181 – 20,467,269	- - CDS="CDS;ID=CDS_FBgn0039214:16_261;Name=CG5794-cds;Parent=FBtr0084667,FBtr0084668,FBtr0306172;parent_type=mRNA" - - - - -	15607	20,467,181 – 20,467,269	-	14	88	85.44	-2.80	0.57	0.971491
11351	dm3.chr3R	20,472,603 – 20,472,701	- - CDS="CDS;ID=CDS_FBgn0039214:20_261;Name=CG5794-cds;Parent=FBtr0084667,FBtr0084668,FBtr0306172;parent_type=mRNA" - - - - -	15608	20,472,603 – 20,472,701	-	7	113	74.93	-2.29	0.60	0.987548
11353	dm3.chr3R	20,497,681 – 20,497,774	- - - - - - - -	15610	20,497,681 – 20,497,774	+	3	97	50.36	-1.44	0.42	0.901327
11354	dm3.chr3R	20,501,331 – 20,501,405	- - - - - - - -	15611	20,501,331 – 20,501,405	+	14	74	88.05	-2.43	0.77	0.980906
11356	dm3.chr3R	20,518,222 – 20,518,313	- - - intron="intron;ID=intron_FBgn0003429:18_FBgn0003429:20;Name=slo-in;Parent=FBtr0084683,FBtr0084684,FBtr0100622,FBtr0100623,FBtr0100624,FBtr0100629,FBtr0100631,FBtr0100632,FBtr0100633,FBtr0100634,FBtr0100635,FBtr0301581,FBtr0301582;parent_type=mRNA" - - - -	15614	20,518,222 – 20,518,313	+	8	110	60.65	-3.68	0.21	0.997600
11356	dm3.chr3R	20,518,222 – 20,518,313		15615	20,518,222 – 20,518,313	-	8	110	60.65	-4.05	0.12	0.993307
11363	dm3.chr3R	20,632,026 – 20,632,132	- - - - - - - -	15622	20,632,026 – 20,632,132	-	12	127	66.27	-2.30	0.36	0.990906
11365	dm3.chr3R	20,641,178 – 20,641,301	- - CDS="CDS;ID=CDS_FBgn0027617:2_100;Name=CG5808-cds;Parent=FBtr0084738;parent_type=mRNA" - - - - -	15624	20,641,178 – 20,641,301	-	6	126	75.53	-2.95	0.59	0.998356
11368	dm3.chr3R	20,701,151 – 20,701,251	- - CDS="CDS;ID=CDS_CG3744:2_90;Name=CG3744-cds;Parent=FBtr0084727,FBtr0084725;parent_type=mRNA" - - - - -	15628	20,701,151 – 20,701,251	-	11	107	67.84	-2.35	0.29	0.959050
11375	dm3.chr3R	20,740,555 – 20,740,635	FBnoncoding="tRNA;ID=FBtr0084714;Name=tRNA:CR31382-RA;Parent=FBgn0051382;Alias=CR31382-RA;Dbxref=FlyBase_Annotation_IDs:CR31382-RA;score_text=Weakly" tRNAscann="Asp_chr3R_trna37" - intron="intron;ID=intron_FBgn0051120:4_FBgn0051120:3;Name=CG31120-in;Parent=FBtr0089440;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010887279.1/1267-1338\|5.0e-27" "Noncode_2.0=n112842_u111940_DQ604839_piRNA_Norway\|6.2e-08" "unique_Noncode_2.0=u111940_piRNA_Norway\|5.4e-08" -	15635	20,740,555 – 20,740,635	+	12	84	91.01	-1.32	0.98	0.915654
11378	dm3.chr3R	20,748,361 – 20,748,412	- - CDS="CDS;ID=CDS_FBgn0039250:2_206;Name=CG11120-cds;Parent=FBtr0084716;parent_type=mRNA" - - - - -	15640	20,748,361 – 20,748,412	+	6	51	79.87	-1.51	0.93	0.969687
11386	dm3.chr3R	20,802,094 – 20,802,214	- - - - - - - -	15650	20,802,094 – 20,802,214	-	5	120	86.75	-1.79	0.92	0.957028
11387	dm3.chr3R	20,805,995 – 20,806,045	- - - - - - - -	15651	20,805,995 – 20,806,045	+	4	50	93.00	-1.98	0.93	0.944444
11388	dm3.chr3R	20,807,463 – 20,807,586	- - - - - - - -	15653	20,807,480 – 20,807,586	-	5	113	95.13	-3.39	0.98	0.997984
11390	dm3.chr3R	20,809,822 – 20,809,894	- - - - - - - -	15655	20,809,822 – 20,809,894	+	6	73	73.76	-2.28	0.46	0.946478
11391	dm3.chr3R	20,812,700 – 20,812,779	- - - intron="intron;ID=intron_FBgn0039257:3_FBgn0039257:4;Name=tnc-in;Parent=FBtr0305668;parent_type=mRNA" - - - -	15656	20,812,700 – 20,812,779	+	6	94	81.83	-2.15	0.77	0.965773
11391	dm3.chr3R	20,812,700 – 20,812,779		15657	20,812,700 – 20,812,779	-	6	94	81.83	-2.94	0.66	0.990806
11395	dm3.chr3R	20,818,774 – 20,818,837	- - - intron="intron;ID=intron_FBgn0039257:3_FBgn0039257:4;Name=tnc-in;Parent=FBtr0305668;parent_type=mRNA" - - - -	15661	20,818,774 – 20,818,837	-	4	63	85.71	-3.22	0.71	0.991600
11396	dm3.chr3R	20,824,924 – 20,825,030	- - - intron="intron;ID=intron_FBgn0039257:3_FBgn0039257:4;Name=tnc-in;Parent=FBtr0305668;parent_type=mRNA" - - - -	15663	20,824,924 – 20,825,030	-	4	106	85.26	-2.36	0.73	0.923598
11399	dm3.chr3R	20,835,928 – 20,836,050	- - - intron="intron;ID=intron_FBgn0039257:4_FBgn0039257:5;Name=tnc-in;Parent=FBtr0305667,FBtr0305668;parent_type=mRNA" - - - -	15666	20,835,928 – 20,836,050	+	5	135	71.64	-1.73	0.65	0.980678
11399	dm3.chr3R	20,835,928 – 20,836,050		15667	20,835,928 – 20,836,050	-	5	135	71.64	-2.17	0.53	0.982963
11402	dm3.chr3R	20,870,545 – 20,870,619	- - - intron="intron;ID=intron_FBgn0259178:11_FBgn0259178:9;Name=5PtaseI-in;Parent=FBtr0299660,FBtr0299662;parent_type=mRNA" - - - -	15671	20,870,545 – 20,870,619	-	6	77	85.33	-1.98	0.83	0.950747
11403	dm3.chr3R	20,873,278 – 20,873,474	- - - - - - - -	15672	20,873,278 – 20,873,372	+	3	118	66.10	-1.80	0.53	0.906169
				15673	20,873,299 – 20,873,412	+	5	118	83.26	-2.77	0.63	0.975014
				15677	20,873,373 – 20,873,474	-	5	101	89.50	-2.76	0.76	0.970258
11404	dm3.chr3R	20,875,397 – 20,875,591	- - - - - - - -	15678	20,875,397 – 20,875,517	+	5	120	97.83	-2.05	0.97	0.959768
11404	dm3.chr3R	20,875,397 – 20,875,591	- - - - - - - -	15680	20,875,437 – 20,875,554	+	5	117	96.92	-1.71	0.97	0.916907
11409	dm3.chr3R	20,915,810 – 20,915,918	- - - - - - - -	15686	20,915,810 – 20,915,918	+	6	120	92.86	-3.50	0.92	0.997701
11409	dm3.chr3R	20,915,810 – 20,915,918	- - - - - - - -	15687	20,915,810 – 20,915,918	-	6	120	92.86	-2.94	0.85	0.987106
11410	dm3.chr3R	20,919,958 – 20,920,050	- - - - - - - -	15688	20,919,958 – 20,920,050	-	7	112	67.73	-2.32	0.40	0.976013
11412	dm3.chr3R	20,925,682 – 20,925,830	- - - - - - - -	15692	20,925,682 – 20,925,796	-	10	120	65.02	-2.35	0.27	0.961573
11413	dm3.chr3R	20,930,236 – 20,930,352	- - CDS="CDS;ID=CDS_FBgn0054027:4_91;Name=CG34027-cds;Parent=FBtr0100082;parent_type=mRNA" - - - - -	15695	20,930,236 – 20,930,352	-	8	119	68.35	-2.02	0.39	0.962535
11420	dm3.chr3R	20,982,482 – 20,982,622	- - - - - - - -	15702	20,982,482 – 20,982,587	+	12	115	72.05	-2.59	0.42	0.986898
11420	dm3.chr3R	20,982,482 – 20,982,622	- - - - - - - -	15703	20,982,512 – 20,982,622	+	4	120	82.61	-3.70	0.52	0.991292
11422	dm3.chr3R	20,993,685 – 20,993,799	- - - - - - - -	15705	20,993,685 – 20,993,799	-	12	120	90.96	-2.44	0.89	0.983243
11423	dm3.chr3R	21,000,316 – 21,000,408	- - - intron="intron;ID=intron_FBgn0083946:8_FBgn0083946:7;Name=CG34110-in;Parent=FBtr0110797;parent_type=mRNA" - - - -	15706	21,000,316 – 21,000,408	-	10	117	78.57	-2.05	0.62	0.945589
11425	dm3.chr3R	21,008,164 – 21,008,251	- - - intron="intron;ID=intron_FBgn0083946:8_FBgn0083946:7;Name=CG34110-in;Parent=FBtr0110797;parent_type=mRNA" - - - -	15708	21,008,164 – 21,008,251	+	6	98	77.52	-1.73	0.76	0.958851
11426	dm3.chr3R	21,012,915 – 21,013,010	- - - intron="intron;ID=intron_FBgn0039286:1_FBgn0039286:2;Name=dan-in;Parent=FBtr0084803;parent_type=mRNA" - - - -	15709	21,012,915 – 21,013,010	+	6	110	65.01	-0.96	0.58	0.910110
11429	dm3.chr3R	21,027,537 – 21,027,627	- - - intron="intron;ID=intron_CG10244:5_CG10244:6;Name=Cad96Ca-in;Parent=FBtr0084874;parent_type=mRNA" - - - -	15713	21,027,537 – 21,027,627	+	5	96	72.50	-1.45	0.67	0.926721
11434	dm3.chr3R	21,064,795 – 21,064,850	- - - - - - - -	15719	21,064,795 – 21,064,850	+	5	59	66.26	-1.75	0.61	0.987329
11435	dm3.chr3R	21,118,508 – 21,118,609	- - CDS="CDS;ID=CDS_FBgn0051098:3_151;Name=CG31098-cds;Parent=FBtr0084863;parent_type=mRNA" - - - - -	15720	21,118,508 – 21,118,609	+	12	117	76.16	-2.09	0.47	0.937796
11437	dm3.chr3R	21,166,905 – 21,166,998	- - - intron="intron;ID=intron_FBgn0027376:3_FBgn0027376:4;Name=rha-in;Parent=FBtr0084832;parent_type=mRNA" - - - -	15722	21,166,905 – 21,166,998	+	9	95	61.94	-0.09	0.66	0.938931
11438	dm3.chr3R	21,181,709 – 21,181,811	- - CDS="CDS;ID=CDS_CG10772:13_56;Name=Fur1-cds;Parent=FBtr0089983;parent_type=mRNA" - - - - -	15723	21,181,709 – 21,181,811	-	12	120	71.50	-1.47	0.50	0.922176
11439	dm3.chr3R	21,194,687 – 21,194,741	- - - - - - - -	15724	21,194,687 – 21,194,741	-	4	54	95.99	-2.07	0.97	0.968464
11442	dm3.chr3R	21,232,873 – 21,232,964	- - - - - - - -	15727	21,232,873 – 21,232,964	-	5	101	88.22	-1.52	0.94	0.911979
11446	dm3.chr3R	21,251,476 – 21,251,569	- - - intron="intron;ID=intron_CG10772:2_CG10772:3;Name=Fur1-in;Parent=FBtr0089987,FBtr0089986,FBtr0089983,FBtr0089984,FBtr0089982;parent_type=mRNA" - - - -	15732	21,251,476 – 21,251,569	+	6	93	93.91	-2.17	0.86	0.907811
11447	dm3.chr3R	21,252,994 – 21,253,243	- - - intron="intron;ID=intron_CG10772:2_CG10772:3;Name=Fur1-in;Parent=FBtr0089987,FBtr0089986,FBtr0089983,FBtr0089984,FBtr0089982;parent_type=mRNA" - - - -	15734	21,253,033 – 21,253,130	+	6	102	89.49	-2.31	0.83	0.955508
11447	dm3.chr3R	21,252,994 – 21,253,243		15735	21,253,033 – 21,253,133	+	6	105	89.47	-2.23	0.83	0.944192
11448	dm3.chr3R	21,260,203 – 21,260,283	- - - intron="intron;ID=intron_CG10772:16_CG10772:2;Name=Fur1-in;Parent=FBtr0089987;parent_type=mRNA" - - - -	15738	21,260,203 – 21,260,283	-	3	80	96.67	-3.66	1.01	0.998573
11450	dm3.chr3R	21,276,764 – 21,276,828	- - - intron="intron;ID=intron_CG10772:16_CG10772:2;Name=Fur1-in;Parent=FBtr0089987;parent_type=mRNA" - - - -	15740	21,276,764 – 21,276,828	+	6	64	80.10	-2.06	0.58	0.910208
11451	dm3.chr3R	21,278,650 – 21,278,746	- - - intron="intron;ID=intron_CG10772:16_CG10772:2;Name=Fur1-in;Parent=FBtr0089987;parent_type=mRNA" - - - -	15742	21,278,650 – 21,278,746	+	6	96	76.88	-2.04	0.68	0.983892
11451	dm3.chr3R	21,278,650 – 21,278,746		15743	21,278,650 – 21,278,746	-	6	96	76.88	-1.53	0.79	0.964224
11452	dm3.chr3R	21,290,624 – 21,290,726	- - - intron="intron;ID=intron_CG10772:1_CG10772:16;Name=Fur1-in;Parent=FBtr0089987;parent_type=mRNA" - - - -	15744	21,290,624 – 21,290,726	-	5	113	87.26	-2.32	0.78	0.946333
11456	dm3.chr3R	21,347,460 – 21,347,572	- - - intron="intron;ID=intron_FBgn0011666:3_FBgn0011666:4;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15748	21,347,460 – 21,347,572	+	11	124	70.32	-1.66	0.52	0.978158
11465	dm3.chr3R	21,392,788 – 21,392,885	- - - intron="intron;ID=intron_FBgn0011666:4_FBgn0011666:5;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15758	21,392,788 – 21,392,885	-	7	98	83.60	-2.36	0.63	0.945613
11469	dm3.chr3R	21,414,595 – 21,414,677	FBnoncoding="pre_miRNA;ID=FBtr0304485;Name=mir-1000-RM;Parent=FBgn0262319;Alias=CR43026-RM;Dbxref=FlyBase_Annotation_IDs:CR43026-RM,miRBase:MI0005862" - - - - - - "mirBase_v16=dme-mir-1000\|7.4e-42"	15763	21,414,595 – 21,414,677	+	15	84	78.41	-1.15	0.71	0.903269
11469	dm3.chr3R	21,414,595 – 21,414,677		15764	21,414,595 – 21,414,677	-	15	84	78.41	-3.58	0.81	0.999610
11475	dm3.chr3R	21,453,133 – 21,453,223	- - - - - - - -	15770	21,453,133 – 21,453,223	-	9	111	72.26	-2.06	0.47	0.936991
11478	dm3.chr3R	21,477,131 – 21,477,240	FBnoncoding="pre_miRNA;ID=FBtr0304252;Name=mir-92b-RM;Parent=FBgn0262388;Alias=CR42916-RM;Dbxref=FlyBase_Annotation_IDs:CR42916-RM,miRBase:MI0000379" - - - - - - "mirBase_v16=dme-mir-92b\|2.7e-45"	15774	21,477,131 – 21,477,240	+	11	109	81.09	-2.44	0.82	0.995153
11481	dm3.chr3R	21,510,081 – 21,510,251	- - CDS="CDS;ID=CDS_CG4759:2_71;Name=RpL27-cds;Parent=FBtr0084932;parent_type=mRNA" - - - - -	15778	21,510,081 – 21,510,201	-	15	120	82.46	-3.60	0.71	0.999411
				15779	21,510,121 – 21,510,240	-	15	120	79.90	-2.41	0.69	0.996517
				15780	21,510,157 – 21,510,251	+	14	113	73.96	-1.39	0.59	0.927476
11486	dm3.chr3R	21,537,677 – 21,537,770	- - - intron="intron;ID=intron_FBgn0051092:10_FBgn0051092:8;Name=LpR2-in;Parent=FBtr0113384,FBtr0113386;parent_type=mRNA" - - - -	15787	21,537,677 – 21,537,770	+	4	93	84.42	-2.64	0.73	0.971603
11495	dm3.chr3R	21,575,730 – 21,575,783	- - - intron="intron;ID=intron_FBgn0066101:11_FBgn0066101:10;Name=LpR1-in;Parent=FBtr0113480,FBtr0301466,FBtr0301468;parent_type=mRNA" - - - -	15797	21,575,730 – 21,575,783	-	9	53	82.55	-1.77	0.81	0.953177
11498	dm3.chr3R	21,587,566 – 21,587,686	- - - - - - - -	15800	21,587,566 – 21,587,673	-	5	107	67.49	-2.54	0.46	0.989320
11498	dm3.chr3R	21,587,566 – 21,587,686	- - - - - - - -	15801	21,587,579 – 21,587,686	-	6	120	66.55	-1.82	0.60	0.988359
11500	dm3.chr3R	21,589,353 – 21,589,449	- - - - - - - -	15803	21,589,353 – 21,589,449	+	9	111	64.23	-2.06	0.34	0.951287
11501	dm3.chr3R	21,613,596 – 21,613,690	- - - - - - - -	15804	21,613,596 – 21,613,690	+	5	97	73.40	-1.40	0.65	0.901915
11507	dm3.chr3R	21,686,967 – 21,687,066	- - - - - - - -	15811	21,686,967 – 21,687,066	+	11	109	76.75	-2.47	0.50	0.973487
11509	dm3.chr3R	21,691,869 – 21,691,977	- - - - - - - -	15814	21,691,869 – 21,691,977	+	6	109	78.51	-1.72	0.69	0.936335
11512	dm3.chr3R	21,708,648 – 21,708,739	- - - intron="intron;ID=intron_FBgn0039381:2_FBgn0039381:4;Name=CG17370-in;Parent=FBtr0084911;parent_type=mRNA" - - - -	15817	21,708,648 – 21,708,739	+	4	97	72.65	-1.79	0.59	0.927486
11515	dm3.chr3R	21,728,515 – 21,728,569	- - CDS="CDS;ID=CDS_CG31089:1_40;Name=CG31089-cds;Parent=FBtr0084942;parent_type=mRNA" - - - - -	15822	21,728,515 – 21,728,569	+	12	61	68.04	-1.35	0.51	0.961589
11518	dm3.chr3R	21,809,143 – 21,809,199	- - - intron="intron;ID=intron_FBgn0015269:1_FBgn0015269:2;Name=Nf1-in;Parent=FBtr0084952,FBtr0084953,FBtr0100113;parent_type=mRNA" - - - -	15825	21,809,143 – 21,809,199	+	5	56	95.89	-1.97	0.92	0.911998
11520	dm3.chr3R	21,835,612 – 21,835,703	- - - - - - - -	15827	21,835,612 – 21,835,703	-	7	113	74.28	-1.61	0.73	0.964536
11521	dm3.chr3R	21,838,452 – 21,838,559	- - - - - - - -	15828	21,838,452 – 21,838,559	-	9	119	73.89	-2.26	0.45	0.955452
11524	dm3.chr3R	21,846,252 – 21,846,343	- - - - - - - -	15832	21,846,252 – 21,846,343	+	10	114	73.13	-1.97	0.53	0.952824
11525	dm3.chr3R	21,846,393 – 21,846,541	- - - - - - - -	15835	21,846,423 – 21,846,541	+	8	119	93.12	-2.10	0.95	0.975039
11525	dm3.chr3R	21,846,393 – 21,846,541	- - - - - - - -	15836	21,846,423 – 21,846,541	-	8	119	93.12	-2.21	0.87	0.939042
11526	dm3.chr3R	21,846,859 – 21,846,921	- - - - - - - -	15837	21,846,859 – 21,846,921	+	5	62	98.71	-5.66	0.99	0.998020
11526	dm3.chr3R	21,846,859 – 21,846,921	- - - - - - - -	15838	21,846,859 – 21,846,921	-	5	62	98.71	-4.72	1.00	0.998777
11527	dm3.chr3R	21,854,697 – 21,854,835	- - - - - - - -	15839	21,854,697 – 21,854,803	-	6	109	82.12	-2.70	0.70	0.990961
11527	dm3.chr3R	21,854,697 – 21,854,835	- - - - - - - -	15840	21,854,743 – 21,854,835	-	3	96	69.37	-1.83	0.64	0.934600
11528	dm3.chr3R	21,856,294 – 21,856,401	- - - - - - - -	15841	21,856,294 – 21,856,401	+	12	118	91.39	-2.12	0.85	0.932379
11529	dm3.chr3R	21,857,352 – 21,857,421	- - - - - - - -	15842	21,857,352 – 21,857,421	-	3	70	92.38	-2.34	1.00	0.992036
11537	dm3.chr3R	21,918,240 – 21,918,292	- - - intron="intron;ID=intron_FBgn0039411:11_FBgn0039411:10;Name=dys-in;Parent=FBtr0113293,FBtr0113294,FBtr0300618;parent_type=mRNA" - - - -	15851	21,918,240 – 21,918,292	+	3	52	100.00	-1.66	1.00	0.924224
11539	dm3.chr3R	21,919,697 – 21,919,792	- - - intron="intron;ID=intron_FBgn0039411:11_FBgn0039411:10;Name=dys-in;Parent=FBtr0113293,FBtr0113294,FBtr0300618;parent_type=mRNA" - - - -	15855	21,919,697 – 21,919,792	-	8	112	73.74	-2.23	0.51	0.966377
11542	dm3.chr3R	21,973,357 – 21,973,486	- - - - - - - -	15858	21,973,357 – 21,973,455	+	6	115	72.93	-1.48	0.59	0.901589
11544	dm3.chr3R	21,980,661 – 21,980,733	- - - - - - - -	15862	21,980,661 – 21,980,733	+	5	73	88.67	-3.14	0.71	0.983353
11545	dm3.chr3R	21,984,606 – 21,984,726	- - - - - - - -	15864	21,984,606 – 21,984,726	+	5	120	97.33	-2.59	0.95	0.985241
11548	dm3.chr3R	22,011,243 – 22,011,334	- - - - - - - -	15868	22,011,243 – 22,011,334	-	7	107	65.54	-1.42	0.48	0.941122
11550	dm3.chr3R	22,052,208 – 22,052,344	- - - - - - - -	15870	22,052,208 – 22,052,344	-	5	146	79.02	-2.78	0.56	0.977684
11552	dm3.chr3R	22,065,928 – 22,066,113	FBnoncoding="ncRNA;ID=FBtr0303214;Name=CR42745-RA;Parent=FBgn0261708;Dbxref=FlyBase_Annotation_IDs:CR42745-RA;score_text=Moderately" - - - - - - -	15872	22,065,928 – 22,066,022	+	5	98	79.13	-2.61	0.60	0.981226
11556	dm3.chr3R	22,084,859 – 22,084,959	- - - - - - - -	15878	22,084,859 – 22,084,959	+	6	101	87.38	-2.52	0.73	0.953487
11561	dm3.chr3R	22,138,619 – 22,138,709	- - - - - - - -	15885	22,138,619 – 22,138,709	+	12	107	66.69	-1.74	0.48	0.985084
11561	dm3.chr3R	22,138,619 – 22,138,709	- - - - - - - -	15886	22,138,619 – 22,138,709	-	12	107	66.69	-1.30	0.55	0.975146
11564	dm3.chr3R	22,163,738 – 22,163,839	- - - intron="intron;ID=intron_CG33970:2_CG33970:3;Name=CG33970-in;Parent=FBtr0100012;parent_type=mRNA" - - - -	15889	22,163,738 – 22,163,839	-	9	114	72.05	-1.64	0.56	0.973555
11575	dm3.chr3R	22,220,443 – 22,220,568	- - - - - - - -	15901	22,220,443 – 22,220,534	-	10	111	80.16	-1.80	0.72	0.938649
11575	dm3.chr3R	22,220,443 – 22,220,568	- - - - - - - -	15903	22,220,469 – 22,220,568	-	12	118	86.90	-2.57	0.63	0.904392
11577	dm3.chr3R	22,224,954 – 22,225,058	- - - - - - - -	15906	22,224,956 – 22,225,058	+	8	104	83.15	-2.71	0.51	0.922124
11579	dm3.chr3R	22,234,459 – 22,234,550	- - - - - - - -	15909	22,234,459 – 22,234,550	-	5	100	88.51	-1.72	0.93	0.938343
11580	dm3.chr3R	22,246,468 – 22,246,559	- - - - - - - -	15910	22,246,468 – 22,246,559	-	12	107	72.11	-1.78	0.49	0.973206
11582	dm3.chr3R	22,268,921 – 22,269,024	- - - intron="intron;ID=intron_CG5441:1_CG5441:2;Name=dei-in;Parent=FBtr0085009;parent_type=mRNA" - - - -	15913	22,268,921 – 22,269,024	-	6	107	69.23	-1.30	0.59	0.951985
11583	dm3.chr3R	22,271,397 – 22,271,489	- - - intron="intron;ID=intron_CG5441:1_CG5441:2;Name=dei-in;Parent=FBtr0085009;parent_type=mRNA" - - - -	15914	22,271,397 – 22,271,489	-	6	102	79.44	-1.81	0.80	0.966106
11585	dm3.chr3R	22,280,937 – 22,281,036	- - - - - - - -	15916	22,280,937 – 22,281,036	-	3	99	94.61	-2.10	0.93	0.944587
11588	dm3.chr3R	22,303,547 – 22,303,656	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15920	22,303,547 – 22,303,656	-	6	111	89.34	-2.71	0.66	0.903515
11590	dm3.chr3R	22,306,065 – 22,306,171	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15922	22,306,065 – 22,306,171	+	6	114	79.57	-2.36	0.55	0.933636
11593	dm3.chr3R	22,325,180 – 22,325,275	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15927	22,325,180 – 22,325,275	-	6	105	85.99	-2.35	0.86	0.985161
11594	dm3.chr3R	22,332,558 – 22,332,631	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15928	22,332,558 – 22,332,631	+	8	81	92.74	-2.83	0.90	0.991043
11594	dm3.chr3R	22,332,558 – 22,332,631		15929	22,332,558 – 22,332,631	-	8	81	92.74	-2.53	0.97	0.992897
11596	dm3.chr3R	22,353,960 – 22,354,060	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15931	22,353,960 – 22,354,060	+	5	120	74.32	-2.10	0.68	0.979620
11600	dm3.chr3R	22,367,490 – 22,367,584	- - - intron="intron;ID=intron_FBgn0261263:4_FBgn0261263:5;Name=scrib-in;Parent=FBtr0302094,FBtr0302095,FBtr0302096,FBtr0302097,FBtr0302098,FBtr0302099,FBtr0302100,FBtr0302101,FBtr0302102,FBtr0302103;parent_type=mRNA" - - - -	15935	22,367,490 – 22,367,584	+	5	99	91.25	-1.95	0.91	0.939503
11604	dm3.chr3R	22,379,061 – 22,379,160	- - - intron="intron;ID=intron_FBgn0261263:5_FBgn0261263:6;Name=scrib-in;Parent=FBtr0302094,FBtr0302095,FBtr0302096,FBtr0302097,FBtr0302098,FBtr0302099,FBtr0302100,FBtr0302101,FBtr0302102,FBtr0302103;parent_type=mRNA" - - - -	15940	22,379,061 – 22,379,160	+	6	99	77.16	-2.26	0.70	0.991830
11605	dm3.chr3R	22,382,080 – 22,382,178	- - - intron="intron;ID=intron_FBgn0261263:7_FBgn0261263:8;Name=scrib-in;Parent=FBtr0302094,FBtr0302095,FBtr0302096,FBtr0302097,FBtr0302098,FBtr0302099,FBtr0302100,FBtr0302101,FBtr0302102,FBtr0302103;parent_type=mRNA" - - - -	15941	22,382,080 – 22,382,178	+	7	109	70.03	-1.78	0.58	0.989084
11606	dm3.chr3R	22,392,834 – 22,392,924	- - CDS="CDS;ID=CDS_FBgn0261263:9_206;Name=scrib-cds;Parent=FBtr0302094,FBtr0302095,FBtr0302096,FBtr0302097,FBtr0302098,FBtr0302099,FBtr0302100,FBtr0302101,FBtr0302102,FBtr0302103;parent_type=mRNA" - - - - -	15943	22,392,834 – 22,392,924	+	6	93	81.10	-2.49	0.70	0.987196
11607	dm3.chr3R	22,395,783 – 22,395,878	- - - intron="intron;ID=intron_FBgn0261263:11_FBgn0261263:12;Name=scrib-in;Parent=FBtr0302096;parent_type=mRNA" - - - -	15946	22,395,783 – 22,395,878	-	4	97	92.76	-3.02	0.93	0.995199
11608	dm3.chr3R	22,397,211 – 22,397,268	- - - intron="intron;ID=intron_FBgn0261263:11_FBgn0261263:12;Name=scrib-in;Parent=FBtr0302096;parent_type=mRNA" - - - -	15947	22,397,211 – 22,397,268	+	5	59	96.19	-3.75	0.98	0.998459
11608	dm3.chr3R	22,397,211 – 22,397,268		15948	22,397,211 – 22,397,268	-	5	59	96.19	-3.92	0.98	0.998642
11610	dm3.chr3R	22,398,148 – 22,398,274	- - - intron="intron;ID=intron_FBgn0261263:11_FBgn0261263:12;Name=scrib-in;Parent=FBtr0302096;parent_type=mRNA" - - - -	15950	22,398,148 – 22,398,247	-	6	103	88.24	-2.80	0.76	0.981475
11612	dm3.chr3R	22,422,481 – 22,422,590	- - - - - - - -	15954	22,422,481 – 22,422,575	+	6	108	74.40	-2.32	0.63	0.993006
				15955	22,422,481 – 22,422,575	-	6	108	74.40	-2.22	0.55	0.977196
				15956	22,422,491 – 22,422,590	+	7	113	74.50	-2.42	0.41	0.940343
11618	dm3.chr3R	22,472,770 – 22,472,864	- - - - - - - -	15962	22,472,770 – 22,472,864	+	6	100	77.05	-1.41	0.74	0.916974
11620	dm3.chr3R	22,484,144 – 22,484,268	- - - - - - - -	15964	22,484,144 – 22,484,245	+	12	111	84.85	-3.03	0.56	0.980160
11620	dm3.chr3R	22,484,144 – 22,484,268	- - - - - - - -	15966	22,484,165 – 22,484,268	+	12	112	82.77	-1.84	0.71	0.924428
11622	dm3.chr3R	22,508,163 – 22,508,254	- - - - - - - -	15969	22,508,163 – 22,508,254	+	5	93	85.71	-2.06	0.81	0.945513
11626	dm3.chr3R	22,553,663 – 22,553,713	- - - intron="intron;ID=intron_FBgn0040608:1_FBgn0040608:2;Name=CG14246-in;Parent=FBtr0100441;parent_type=mRNA" - - - -	15973	22,553,663 – 22,553,713	+	5	50	96.80	-1.82	0.97	0.937488
11627	dm3.chr3R	22,570,350 – 22,570,454	- - - - - - - -	15974	22,570,350 – 22,570,454	+	12	119	81.86	-2.74	0.74	0.995184
11627	dm3.chr3R	22,570,350 – 22,570,454	- - - - - - - -	15975	22,570,350 – 22,570,454	-	12	119	81.86	-4.84	0.92	0.999065
11629	dm3.chr3R	22,600,011 – 22,600,074	- - - - - - - -	15978	22,600,011 – 22,600,074	+	5	81	67.61	-2.26	0.74	0.997828
11630	dm3.chr3R	22,602,387 – 22,602,482	- - - - - - - -	15979	22,602,387 – 22,602,482	+	11	106	73.76	-1.58	0.59	0.969620
11635	dm3.chr3R	22,624,089 – 22,624,192	- - - - - - - -	15984	22,624,089 – 22,624,192	+	6	111	68.10	-1.97	0.48	0.981534
11636	dm3.chr3R	22,626,458 – 22,626,552	- - - intron="intron;ID=intron_CG5490:1_CG5490:2;Name=Tl-in;Parent=FBtr0085060,FBtr0085059;parent_type=mRNA" - - - -	15985	22,626,458 – 22,626,552	+	8	103	61.71	-1.66	0.36	0.948358
11637	dm3.chr3R	22,633,954 – 22,634,086	- - - intron="intron;ID=intron_CG5490:1_CG5490:2;Name=Tl-in;Parent=FBtr0085060,FBtr0085059;parent_type=mRNA" - - - -	15987	22,633,992 – 22,634,086	-	4	96	79.89	-2.37	0.68	0.957870
11638	dm3.chr3R	22,634,527 – 22,634,623	- - - intron="intron;ID=intron_CG5490:1_CG5490:2;Name=Tl-in;Parent=FBtr0085060,FBtr0085059;parent_type=mRNA" - - - -	15988	22,634,527 – 22,634,623	-	10	106	68.54	-1.11	0.63	0.978827
11647	dm3.chr3R	22,716,156 – 22,716,287	- - - intron="intron;ID=intron_CG5507:2_CG5507:3;Name=T48-in;Parent=FBtr0085065;parent_type=mRNA" - - - -	15999	22,716,156 – 22,716,251	+	7	105	69.86	-2.23	0.42	0.973944
11647	dm3.chr3R	22,716,156 – 22,716,287		16000	22,716,156 – 22,716,251	-	7	105	69.86	-2.93	0.46	0.998551
11650	dm3.chr3R	22,732,399 – 22,732,484	- - - intron="intron;ID=intron_CG5507:2_CG5507:3;Name=T48-in;Parent=FBtr0085065;parent_type=mRNA" - - - -	16006	22,732,399 – 22,732,484	-	8	106	70.86	-1.68	0.53	0.935174
11651	dm3.chr3R	22,733,124 – 22,733,227	- - - intron="intron;ID=intron_CG5507:2_CG5507:3;Name=T48-in;Parent=FBtr0085065;parent_type=mRNA" - - - -	16007	22,733,124 – 22,733,227	+	5	108	69.97	-1.75	0.61	0.979836
11651	dm3.chr3R	22,733,124 – 22,733,227		16008	22,733,124 – 22,733,227	-	5	108	69.97	-1.73	0.56	0.961033
11652	dm3.chr3R	22,736,228 – 22,736,290	- - - - - - - -	16009	22,736,228 – 22,736,290	+	10	75	69.59	-3.77	0.46	0.999825
11652	dm3.chr3R	22,736,228 – 22,736,290	- - - - - - - -	16010	22,736,228 – 22,736,290	-	10	75	69.59	-3.80	0.38	0.999549
11654	dm3.chr3R	22,757,311 – 22,757,401	- - - intron="intron;ID=intron_FBgn0015541:4_FBgn0015541:6;Name=sda-in;Parent=FBtr0305065;parent_type=mRNA" - - - -	16012	22,757,311 – 22,757,401	-	11	93	72.13	-1.57	0.52	0.951181
11655	dm3.chr3R	22,772,983 – 22,773,065	FBnoncoding="tRNA;ID=FBtr0085087;Name=tRNA:CR31071-RA;Parent=FBgn0051071;Alias=CR31071-RA;Dbxref=FlyBase_Annotation_IDs:CR31071-RA;score_text=Weakly" tRNAscann="Gln_chr3R_trna41" - - "Rfam_10.0=RF00005;tRNA;ABJB010446824.1/776-847\|1.3e-24" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|7.7e-23" "unique_Noncode_2.0=u183049_mRNAlike\|6.7e-23" -	16013	22,772,983 – 22,773,065	+	12	83	82.90	-2.38	0.86	0.995595
11655	dm3.chr3R	22,772,983 – 22,773,065		16014	22,772,983 – 22,773,065	-	12	83	82.90	-1.55	0.85	0.963202
11656	dm3.chr3R	22,773,221 – 22,773,351	FBnoncoding="tRNA;ID=FBtr0085086;Name=tRNA:CR31070-RA;Parent=FBgn0051070;Alias=CR31070-RA;Dbxref=FlyBase_Annotation_IDs:CR31070-RA;score_text=Weakly" tRNAscann="Gln_chr3R_trna40" - - "Rfam_10.0=RF00005;tRNA;ABJB010446824.1/776-847\|2.2e-24" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|1.3e-22" "unique_Noncode_2.0=u183049_mRNAlike\|1.2e-22" -	16015	22,773,221 – 22,773,351	+	14	142	67.14	-1.90	0.68	0.999388
11656	dm3.chr3R	22,773,221 – 22,773,351		16016	22,773,221 – 22,773,351	-	14	142	67.14	-1.16	0.72	0.995736
11665	dm3.chr3R	22,881,724 – 22,881,906	- - - - - - - -	16026	22,881,724 – 22,881,835	+	7	120	78.37	-1.99	0.57	0.931769
11665	dm3.chr3R	22,881,724 – 22,881,906	- - - - - - - -	16029	22,881,795 – 22,881,906	+	7	117	75.40	-2.47	0.57	0.994458
11667	dm3.chr3R	22,909,417 – 22,909,511	- - CDS="CDS;ID=CDS_CG6131:4_77;Name=Cpr97Ea-cds;Parent=FBtr0085136;parent_type=mRNA" - - - - -	16031	22,909,417 – 22,909,511	+	6	110	57.78	-1.30	0.45	0.972843
11670	dm3.chr3R	22,958,723 – 22,958,814	- - - intron="intron;ID=intron_FBgn0039492:6_FBgn0039492:5;Name=CG6051-in;Parent=FBtr0113297,FBtr0305050;parent_type=mRNA" - - - -	16034	22,958,723 – 22,958,814	+	5	111	70.81	-2.44	0.39	0.906356
11674	dm3.chr3R	22,995,581 – 22,995,712	- - - - - - - -	16038	22,995,581 – 22,995,672	+	6	92	59.48	-1.03	0.49	0.967471
11675	dm3.chr3R	22,997,401 – 22,997,493	- - - - - - - -	16042	22,997,401 – 22,997,493	-	10	100	76.30	-2.71	0.58	0.995643
11679	dm3.chr3R	23,028,349 – 23,028,446	- - - - - - - -	16047	23,028,349 – 23,028,446	-	11	110	66.90	-1.05	0.51	0.914228
11680	dm3.chr3R	23,037,415 – 23,037,505	- - - - - - - -	16048	23,037,415 – 23,037,505	-	7	97	93.63	-2.44	0.95	0.988299
11684	dm3.chr3R	23,080,785 – 23,080,880	- - CDS="CDS;ID=CDS_CG5930:3_12;Name=TfIIA-L-cds;Parent=FBtr0085155;parent_type=mRNA" - - - - -	16052	23,080,785 – 23,080,880	+	10	98	67.25	-1.17	0.54	0.971732
11685	dm3.chr3R	23,106,099 – 23,106,209	- - - - - - - -	16054	23,106,102 – 23,106,209	-	6	111	71.59	-2.08	0.53	0.983777
11691	dm3.chr3R	23,136,091 – 23,136,264	- - - intron="intron;ID=intron_FBgn0039510:17_FBgn0039510:15;Name=CG3339-in;Parent=FBtr0273192;parent_type=mRNA" - - - -	16062	23,136,091 – 23,136,264	-	9	195	66.57	-1.85	0.37	0.924154
11692	dm3.chr3R	23,146,695 – 23,146,807	- - CDS="CDS;ID=CDS_FBgn0039510:34_94;Name=CG3339-cds;Parent=FBtr0273193;parent_type=mRNA" - - - - -	16063	23,146,695 – 23,146,807	+	13	136	77.64	-2.19	0.55	0.972464
11694	dm3.chr3R	23,160,132 – 23,160,276	- - - - - - - -	16065	23,160,132 – 23,160,244	-	5	114	92.36	-2.61	0.84	0.965663
11696	dm3.chr3R	23,181,020 – 23,181,111	- - - intron="intron;ID=intron_FBgn0260487:1_FBgn0260487:2;Name=CG42534-in;Parent=FBtr0300898;parent_type=mRNA" - - - -	16068	23,181,020 – 23,181,111	+	11	105	75.40	-1.81	0.60	0.978315
11701	dm3.chr3R	23,203,157 – 23,203,261	- - - intron="intron;ID=intron_FBgn0016061:3_FBgn0016061:1;Name=side-in;Parent=FBtr0085168;parent_type=mRNA" - - - -	16074	23,203,157 – 23,203,261	-	8	107	86.04	-2.12	0.73	0.905736
11704	dm3.chr3R	23,238,594 – 23,238,689	- - - intron="intron;ID=intron_FBgn0016061:17_FBgn0016061:16;Name=side-in;Parent=FBtr0085168,FBtr0289998;parent_type=mRNA" - - - -	16079	23,238,594 – 23,238,689	-	7	113	67.21	-1.52	0.64	0.991646
11707	dm3.chr3R	23,243,663 – 23,243,782	- - - intron="intron;ID=intron_FBgn0016061:17_FBgn0016061:16;Name=side-in;Parent=FBtr0085168,FBtr0289998;parent_type=mRNA" - - - -	16082	23,243,663 – 23,243,782	+	5	120	94.65	-2.46	0.92	0.978713
11707	dm3.chr3R	23,243,663 – 23,243,782		16083	23,243,663 – 23,243,782	-	5	120	94.65	-3.22	0.90	0.994641
11708	dm3.chr3R	23,249,393 – 23,249,448	- - - - - - - -	16084	23,249,393 – 23,249,448	+	3	55	91.52	-1.58	0.98	0.935848
11712	dm3.chr3R	23,271,313 – 23,271,408	- - - - - - - -	16088	23,271,313 – 23,271,408	-	8	108	62.22	-2.46	0.36	0.995136
11713	dm3.chr3R	23,285,205 – 23,285,307	- - - - - - - -	16089	23,285,205 – 23,285,307	-	10	116	79.59	-1.29	0.84	0.917206
11714	dm3.chr3R	23,288,654 – 23,288,790	- - - - - - - -	16093	23,288,693 – 23,288,790	-	6	107	69.99	-1.39	0.64	0.962474
11718	dm3.chr3R	23,318,870 – 23,318,961	- - - - - - - -	16097	23,318,870 – 23,318,961	+	6	104	60.63	-1.92	0.39	0.982594
11720	dm3.chr3R	23,322,102 – 23,322,226	- - - - - - - -	16099	23,322,102 – 23,322,213	+	6	119	80.07	-2.37	0.62	0.960400
11721	dm3.chr3R	23,324,101 – 23,324,228	- - - - - - - -	16103	23,324,131 – 23,324,228	-	7	114	70.51	-1.46	0.54	0.932018
11731	dm3.chr3R	23,383,039 – 23,383,113	- - - intron="intron;ID=intron_FBgn0004387:12_FBgn0004387:11;Name=Klp98A-in;Parent=FBtr0085211,FBtr0304671;parent_type=mRNA" - - - -	16116	23,383,039 – 23,383,113	-	7	80	70.32	-1.50	0.48	0.905218
11732	dm3.chr3R	23,394,767 – 23,394,918	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16117	23,394,767 – 23,394,885	-	5	118	92.20	-2.36	0.89	0.968832
11732	dm3.chr3R	23,394,767 – 23,394,918		16118	23,394,803 – 23,394,918	-	6	115	69.83	-1.28	0.62	0.963544
11733	dm3.chr3R	23,395,847 – 23,395,937	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16119	23,395,847 – 23,395,937	+	5	92	87.54	-1.54	0.93	0.916095
11734	dm3.chr3R	23,396,466 – 23,396,758	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16126	23,396,642 – 23,396,758	+	5	118	75.30	-1.70	0.74	0.964779
11737	dm3.chr3R	23,400,005 – 23,400,100	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16130	23,400,005 – 23,400,100	-	5	109	75.52	-2.50	0.60	0.989111
11740	dm3.chr3R	23,405,068 – 23,405,162	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16133	23,405,068 – 23,405,162	+	6	97	72.87	-1.61	0.58	0.922221
11742	dm3.chr3R	23,431,275 – 23,431,368	- - - intron="intron;ID=intron_FBgn0039528:8_FBgn0039528:7;Name=dsd-in;Parent=FBtr0301390;parent_type=mRNA" - - - -	16136	23,431,275 – 23,431,368	+	5	93	90.85	-2.40	0.87	0.970494
11744	dm3.chr3R	23,468,915 – 23,469,065	- - - intron="intron;ID=intron_CG31057:6_CG31057:7;Name=tau-in;Parent=FBtr0085197;parent_type=mRNA" - - - -	16139	23,468,915 – 23,469,065	+	5	165	71.63	-3.21	0.54	0.999310
11744	dm3.chr3R	23,468,915 – 23,469,065		16140	23,468,915 – 23,469,065	-	5	165	71.63	-2.43	0.54	0.994076
11745	dm3.chr3R	23,487,367 – 23,487,463	- - - - - - - -	16141	23,487,367 – 23,487,463	-	11	106	64.03	-1.04	0.47	0.956683
11746	dm3.chr3R	23,487,940 – 23,488,052	- - - - - - - -	16142	23,487,940 – 23,488,052	+	6	118	78.58	-2.16	0.79	0.989925
11746	dm3.chr3R	23,487,940 – 23,488,052	- - - - - - - -	16143	23,487,940 – 23,488,052	-	6	118	78.58	-2.10	0.64	0.960179
11748	dm3.chr3R	23,492,437 – 23,492,536	- - - intron="intron;ID=intron_FBgn0039536:9_FBgn0039536:10;Name=CG18437-in;Parent=FBtr0273246;parent_type=mRNA" - - - -	16146	23,492,445 – 23,492,536	+	12	92	72.15	-0.95	0.70	0.950814
11751	dm3.chr3R	23,513,509 – 23,513,601	- - CDS="CDS;ID=CDS_CG31055:2_74;Name=CG31055-cds;Parent=FBtr0085242;parent_type=mRNA" - - - - -	16149	23,513,509 – 23,513,601	+	8	98	59.76	-2.35	0.38	0.998489
11755	dm3.chr3R	23,546,130 – 23,546,186	- - - - - - - -	16154	23,546,130 – 23,546,186	+	3	56	83.93	-3.04	0.86	0.995785
11755	dm3.chr3R	23,546,130 – 23,546,186	- - - - - - - -	16155	23,546,130 – 23,546,186	-	3	56	83.93	-2.49	0.86	0.985412
11756	dm3.chr3R	23,554,460 – 23,554,573	- - - - - - - -	16156	23,554,460 – 23,554,573	-	3	113	52.99	-1.56	0.44	0.955109
11757	dm3.chr3R	23,572,473 – 23,572,605	- - CDS="CDS;ID=CDS_FBgn0005659:5_200;Name=Ets98B-cds;Parent=FBtr0085224;parent_type=mRNA" - - - - -	16157	23,572,473 – 23,572,570	+	14	119	67.36	-1.30	0.54	0.973140
11761	dm3.chr3R	23,596,921 – 23,597,017	- - - intron="intron;ID=intron_FBgn0085382:3_FBgn0085382:2;Name=CG34353-in;Parent=FBtr0112563;parent_type=mRNA" - - - -	16163	23,596,921 – 23,597,017	-	12	112	74.57	-3.51	0.59	0.999760
11762	dm3.chr3R	23,597,202 – 23,597,295	- - - intron="intron;ID=intron_FBgn0085382:3_FBgn0085382:2;Name=CG34353-in;Parent=FBtr0112563;parent_type=mRNA" - - - -	16164	23,597,202 – 23,597,295	+	7	98	81.27	-2.69	0.63	0.980688
11763	dm3.chr3R	23,601,566 – 23,601,673	- - - intron="intron;ID=intron_FBgn0085382:3_FBgn0085382:2;Name=CG34353-in;Parent=FBtr0112563;parent_type=mRNA" - - - -	16165	23,601,566 – 23,601,673	+	7	112	74.10	-2.63	0.46	0.982666
11763	dm3.chr3R	23,601,566 – 23,601,673		16166	23,601,566 – 23,601,673	-	7	112	74.10	-2.46	0.45	0.963536
11764	dm3.chr3R	23,601,888 – 23,601,980	- - - intron="intron;ID=intron_FBgn0085382:3_FBgn0085382:2;Name=CG34353-in;Parent=FBtr0112563;parent_type=mRNA" - - - -	16167	23,601,888 – 23,601,980	+	6	122	61.53	-1.24	0.51	0.936814
11765	dm3.chr3R	23,610,109 – 23,610,199	- - - intron="intron;ID=intron_FBgn0085382:6_FBgn0085382:5;Name=CG34353-in;Parent=FBtr0112563,FBtr0305292;parent_type=mRNA" - - - -	16168	23,610,109 – 23,610,199	+	5	105	77.03	-2.79	0.77	0.997244
11765	dm3.chr3R	23,610,109 – 23,610,199		16169	23,610,109 – 23,610,199	-	5	105	77.03	-3.00	0.68	0.997441
11770	dm3.chr3R	23,648,545 – 23,648,673	- - - intron="intron;ID=intron_FBgn0085382:11_FBgn0085382:10;Name=CG34353-in;Parent=FBtr0112563,FBtr0305292;parent_type=mRNA" - - - -	16175	23,648,576 – 23,648,673	+	11	117	88.94	-1.92	0.89	0.956249
11770	dm3.chr3R	23,648,545 – 23,648,673		16176	23,648,576 – 23,648,673	-	11	117	88.94	-2.05	0.86	0.956516
11775	dm3.chr3R	23,681,131 – 23,681,226	- - - - - - - -	16181	23,681,131 – 23,681,226	+	4	95	87.41	-3.12	0.75	0.988991
11775	dm3.chr3R	23,681,131 – 23,681,226	- - - - - - - -	16182	23,681,131 – 23,681,226	-	4	95	87.41	-3.75	0.78	0.997744
11777	dm3.chr3R	23,735,276 – 23,735,362	- - - - - - - -	16185	23,735,276 – 23,735,362	-	12	93	88.72	-1.84	0.93	0.967835
11780	dm3.chr3R	23,749,599 – 23,749,786	FBnoncoding="snoRNA;ID=FBtr0113586;Name=snoRNA:Or-aca3-RA;Parent=FBgn0082923;Dbxref=FlyBase_Annotation_IDs:CR34617-RA,REFSEQ:NR_003905;score_text=Weakly" - - intron="intron;ID=intron_CG5502:3_CG5502:4;Name=RpL4-in;Parent=FBtr0085248;parent_type=mRNA" - - - -	16189	23,749,599 – 23,749,693	+	9	115	55.89	-2.41	0.49	0.999735
11780	dm3.chr3R	23,749,599 – 23,749,786		16190	23,749,693 – 23,749,786	-	12	119	60.33	-1.23	0.45	0.974828
11782	dm3.chr3R	23,796,277 – 23,796,378	- - - intron="intron;ID=intron_FBgn0003890:6_FBgn0003890:5;Name=betaTub97EF-in;Parent=FBtr0085261,FBtr0300611;parent_type=mRNA" - - - -	16192	23,796,277 – 23,796,378	+	5	101	79.98	-2.73	0.58	0.979105
11783	dm3.chr3R	23,799,340 – 23,799,443	- - - intron="intron;ID=intron_FBgn0003890:7_FBgn0003890:6;Name=betaTub97EF-in;Parent=FBtr0085261,FBtr0300611;parent_type=mRNA" - - - -	16194	23,799,340 – 23,799,443	-	5	107	84.23	-2.59	0.59	0.900595
11784	dm3.chr3R	23,807,240 – 23,807,302	- - - intron="intron;ID=intron_FBgn0003890:8_FBgn0003890:7;Name=betaTub97EF-in;Parent=FBtr0085261,FBtr0300611;parent_type=mRNA" - - - -	16195	23,807,240 – 23,807,302	+	6	77	70.74	-1.74	0.52	0.903023
11784	dm3.chr3R	23,807,240 – 23,807,302		16196	23,807,240 – 23,807,302	-	6	77	70.74	-2.58	0.54	0.995349
11786	dm3.chr3R	23,818,738 – 23,818,870	- - - - - - - -	16199	23,818,777 – 23,818,870	+	8	99	74.57	-1.38	0.68	0.910993
11786	dm3.chr3R	23,818,738 – 23,818,870	- - - - - - - -	16200	23,818,777 – 23,818,870	-	8	99	74.57	-1.61	0.64	0.938243
11789	dm3.chr3R	23,830,084 – 23,830,228	- - - - - - - -	16205	23,830,084 – 23,830,193	-	12	115	75.61	-1.86	0.53	0.960903
11789	dm3.chr3R	23,830,084 – 23,830,228	- - - - - - - -	16206	23,830,114 – 23,830,228	-	12	119	84.22	-2.68	0.62	0.980099
11790	dm3.chr3R	23,831,591 – 23,831,691	- - - - - - - -	16207	23,831,591 – 23,831,691	-	7	110	74.06	-2.34	0.41	0.910956
11791	dm3.chr3R	23,835,287 – 23,835,386	- - - - - - - -	16208	23,835,287 – 23,835,386	+	12	117	89.96	-1.82	0.89	0.932147
11794	dm3.chr3R	23,858,203 – 23,858,338	- - - intron="intron;ID=intron_FBgn0085391:3_FBgn0085391:4;Name=CG34362-in;Parent=FBtr0112582,FBtr0301397;parent_type=mRNA" - - - -	16212	23,858,203 – 23,858,306	+	6	110	77.76	-2.39	0.54	0.949326
11802	dm3.chr3R	23,921,063 – 23,921,171	- - - - - - - -	16224	23,921,063 – 23,921,171	-	6	116	80.98	-2.30	0.58	0.914945
11804	dm3.chr3R	23,936,832 – 23,936,938	- - - - - - - -	16226	23,936,832 – 23,936,938	-	5	107	72.39	-2.53	0.62	0.996408
11807	dm3.chr3R	23,949,788 – 23,949,891	- - - - - - - -	16231	23,949,788 – 23,949,891	-	6	112	69.76	-1.79	0.45	0.912047
11808	dm3.chr3R	23,952,545 – 23,952,636	- - - - - - - -	16232	23,952,545 – 23,952,636	+	12	104	74.88	-2.23	0.65	0.996852
11813	dm3.chr3R	23,983,399 – 23,983,491	- - - intron="intron;ID=intron_FBgn0085383:5_FBgn0085383:6;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916;parent_type=mRNA" - - - -	16237	23,983,399 – 23,983,491	+	4	92	91.85	-1.62	0.97	0.937741
11814	dm3.chr3R	23,987,350 – 23,987,447	- - - intron="intron;ID=intron_FBgn0085383:5_FBgn0085383:6;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916;parent_type=mRNA" - - - -	16238	23,987,350 – 23,987,447	-	12	107	81.87	-2.74	0.55	0.985325
11818	dm3.chr3R	24,016,590 – 24,016,683	- - - intron="intron;ID=intron_FBgn0085383:5_FBgn0085383:6;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916;parent_type=mRNA" - - - -	16242	24,016,590 – 24,016,683	+	10	102	74.48	-1.79	0.55	0.977373
11819	dm3.chr3R	24,046,388 – 24,046,479	- - - intron="intron;ID=intron_FBgn0085383:6_FBgn0085383:7;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916,FBtr0304917;parent_type=mRNA" - - - -	16243	24,046,388 – 24,046,479	-	9	98	79.06	-2.03	0.75	0.983675
11823	dm3.chr3R	24,085,379 – 24,085,472	- - - - - - - -	16247	24,085,379 – 24,085,472	+	6	97	84.35	-3.27	0.66	0.994802
11824	dm3.chr3R	24,094,341 – 24,094,441	- - - - - - - -	16248	24,094,341 – 24,094,441	-	10	106	61.72	-2.02	0.28	0.955489
11825	dm3.chr3R	24,095,383 – 24,095,482	- - - - - - - -	16249	24,095,383 – 24,095,482	-	11	114	64.76	-1.84	0.32	0.909601
11826	dm3.chr3R	24,099,547 – 24,099,678	- - - - - - - -	16251	24,099,587 – 24,099,678	-	7	112	69.76	-1.93	0.62	0.993955
11827	dm3.chr3R	24,102,154 – 24,102,254	- - - - - - - -	16253	24,102,156 – 24,102,254	+	11	119	79.29	-2.62	0.56	0.983751
11827	dm3.chr3R	24,102,154 – 24,102,254	- - - - - - - -	16254	24,102,156 – 24,102,254	-	11	119	79.29	-2.77	0.55	0.988646
11828	dm3.chr3R	24,105,309 – 24,105,429	- - - - - - - -	16255	24,105,309 – 24,105,429	+	12	120	94.97	-1.72	0.97	0.943214
11830	dm3.chr3R	24,117,864 – 24,118,100	- - CDS="CDS;ID=CDS_FBgn0002865:1_230;Name=Mst98Ca-cds;Parent=FBtr0085277;parent_type=mRNA" - - - - -	16259	24,117,959 – 24,118,060	-	12	110	68.05	-1.47	0.44	0.933990
11831	dm3.chr3R	24,121,148 – 24,121,210	- - - - - - - -	16261	24,121,148 – 24,121,210	+	10	72	67.28	-2.10	0.40	0.983352
11836	dm3.chr3R	24,160,831 – 24,160,958	- - - intron="intron;ID=intron_FBgn0261618:11_FBgn0261618:10;Name=larp-in;Parent=FBtr0306390;parent_type=mRNA" - - - -	16267	24,160,831 – 24,160,944	+	6	120	73.58	-3.52	0.59	0.999642
				16268	24,160,831 – 24,160,944	-	6	120	73.58	-3.15	0.47	0.997405
				16269	24,160,839 – 24,160,958	+	6	120	75.42	-3.17	0.63	0.999238
				16270	24,160,839 – 24,160,958	-	6	120	75.42	-2.89	0.48	0.993402
11837	dm3.chr3R	24,160,975 – 24,161,025	- - - - - - - -	16271	24,160,975 – 24,161,025	-	4	51	94.06	-3.22	0.95	0.996796
11840	dm3.chr3R	24,176,584 – 24,176,654	- - - - - - - -	16275	24,176,584 – 24,176,654	+	7	70	69.33	-1.34	0.58	0.973756
11847	dm3.chr3R	24,208,034 – 24,208,138	- - - - - - - -	16282	24,208,034 – 24,208,136	-	8	104	83.84	-2.33	0.65	0.925904
11847	dm3.chr3R	24,208,034 – 24,208,138	- - - - - - - -	16284	24,208,035 – 24,208,138	-	8	103	83.54	-2.45	0.84	0.991461
11855	dm3.chr3R	24,224,766 – 24,224,866	- - - - - - - -	16294	24,224,766 – 24,224,866	+	10	102	85.23	-2.16	0.65	0.902273
11855	dm3.chr3R	24,224,766 – 24,224,866	- - - - - - - -	16295	24,224,766 – 24,224,866	-	10	102	85.23	-1.95	0.83	0.967954
11857	dm3.chr3R	24,238,990 – 24,239,158	- - - - - - - -	16297	24,238,990 – 24,239,080	-	7	100	70.76	-2.14	0.44	0.967181
11859	dm3.chr3R	24,250,841 – 24,250,934	- - - intron="intron;ID=intron_CG14064:1_CG14064:2;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16301	24,250,841 – 24,250,934	-	6	100	79.73	-1.73	0.79	0.951917
11865	dm3.chr3R	24,267,404 – 24,267,567	- - - intron="intron;ID=intron_CG14064:1_CG14064:2;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16309	24,267,428 – 24,267,537	+	6	110	81.77	-2.12	0.74	0.968865
11867	dm3.chr3R	24,278,860 – 24,278,953	- - - intron="intron;ID=intron_CG14064:2_CG14064:3;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16312	24,278,860 – 24,278,953	+	8	111	72.59	-2.39	0.39	0.932517
11871	dm3.chr3R	24,288,450 – 24,288,588	- - - intron="intron;ID=intron_CG14064:3_CG14064:4;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16318	24,288,480 – 24,288,588	+	3	108	85.80	-2.27	0.81	0.937390
11873	dm3.chr3R	24,316,273 – 24,316,396	- - - intron="intron;ID=intron_FBgn0013813:6_FBgn0013813:7;Name=Dhc98D-in;Parent=FBtr0301302,FBtr0301303;parent_type=mRNA" - - - -	16320	24,316,273 – 24,316,371	+	12	120	80.05	-2.23	0.58	0.938705
11873	dm3.chr3R	24,316,273 – 24,316,396		16321	24,316,294 – 24,316,396	+	11	112	85.69	-2.71	0.54	0.902470
11875	dm3.chr3R	24,324,030 – 24,324,125	- - - intron="intron;ID=intron_FBgn0013813:19_FBgn0013813:20;Name=Dhc98D-in;Parent=FBtr0301302,FBtr0301303;parent_type=mRNA" - - - -	16323	24,324,030 – 24,324,125	+	6	96	83.57	-2.80	0.61	0.976844
11876	dm3.chr3R	24,331,286 – 24,331,397	- - - intron="intron;ID=intron_FBgn0013813:28_FBgn0013813:29;Name=Dhc98D-in;Parent=FBtr0301302,FBtr0301303;parent_type=mRNA" - - - -	16324	24,331,286 – 24,331,384	+	5	114	71.63	-1.71	0.61	0.951806
11876	dm3.chr3R	24,331,286 – 24,331,397		16326	24,331,297 – 24,331,397	+	6	112	65.47	-1.84	0.41	0.960343
11877	dm3.chr3R	24,331,469 – 24,331,530	- - - intron="intron;ID=intron_FBgn0013813:28_FBgn0013813:29;Name=Dhc98D-in;Parent=FBtr0301302,FBtr0301303;parent_type=mRNA" - - - -	16327	24,331,469 – 24,331,530	-	9	61	73.12	-0.89	0.83	0.952491
11878	dm3.chr3R	24,339,292 – 24,339,403	- - - intron="intron;ID=intron_FBgn0013813:37_FBgn0013813:38;Name=Dhc98D-in;Parent=FBtr0301302,FBtr0301303;parent_type=mRNA" - - - -	16329	24,339,292 – 24,339,403	-	5	111	96.58	-2.91	0.94	0.992167
11882	dm3.chr3R	24,372,177 – 24,372,270	- - - - - - - -	16333	24,372,177 – 24,372,270	-	9	111	78.24	-2.20	0.65	0.977877
11885	dm3.chr3R	24,374,858 – 24,374,976	- - - - - - - -	16338	24,374,858 – 24,374,976	-	5	118	63.02	-1.60	0.43	0.962773
11887	dm3.chr3R	24,380,772 – 24,380,873	- - - - - - - -	16340	24,380,772 – 24,380,873	-	5	111	89.71	-2.67	0.91	0.991731
11892	dm3.chr3R	24,398,985 – 24,399,102	- - - - - - - -	16345	24,398,985 – 24,399,102	-	5	117	97.01	-2.28	0.93	0.959315
11894	dm3.chr3R	24,410,315 – 24,410,412	- - - - - - - -	16347	24,410,315 – 24,410,412	-	12	114	68.55	-1.36	0.51	0.950972
11897	dm3.chr3R	24,427,253 – 24,427,395	FBnoncoding="snoRNA;ID=FBtr0113587;Name=snoRNA:Psi28S-3405a-RA;Parent=FBgn0082960;Dbxref=FlyBase_Annotation_IDs:CR34618-RA,REFSEQ:NR_003906;score_text=Weakly" - - intron="intron;ID=intron_CG9983:7_CG9983:3;Name=Hrb98DE-in;Parent=FBtr0085302,FBtr0085299,FBtr0085303;parent_type=mRNA" - - - -	16351	24,427,253 – 24,427,395	+	12	158	75.94	-2.11	0.53	0.972225
11898	dm3.chr3R	24,427,597 – 24,427,677	FBnoncoding="snoRNA;ID=FBtr0113589;Name=snoRNA:Psi28S-3405b-RA;Parent=FBgn0082959;Dbxref=FlyBase_Annotation_IDs:CR34620-RA,REFSEQ:NR_003908;score_text=Weakly" - - intron="intron;ID=intron_CG9983:7_CG9983:3;Name=Hrb98DE-in;Parent=FBtr0085302,FBtr0085299,FBtr0085303;parent_type=mRNA" - - - -	16352	24,427,597 – 24,427,677	+	12	83	67.09	-2.27	0.58	0.999610
11898	dm3.chr3R	24,427,597 – 24,427,677		16353	24,427,597 – 24,427,677	-	12	83	67.09	-0.94	0.54	0.956198
11900	dm3.chr3R	24,428,266 – 24,428,414	FBnoncoding="snoRNA;ID=FBtr0113592;Name=snoRNA:Psi28S-3405d-RA;Parent=FBgn0082957;Dbxref=FlyBase_Annotation_IDs:CR34623-RA,REFSEQ:NR_003911;score_text=Weakly" - - intron="intron;ID=intron_CG9983:7_CG9983:3;Name=Hrb98DE-in;Parent=FBtr0085302,FBtr0085299,FBtr0085303;parent_type=mRNA" - - - -	16355	24,428,266 – 24,428,414	+	11	167	76.07	-2.35	0.62	0.995174
11908	dm3.chr3R	24,498,073 – 24,498,256	- - - - - - - -	16364	24,498,073 – 24,498,256	+	6	192	69.99	-1.63	0.49	0.924146
11908	dm3.chr3R	24,498,073 – 24,498,256	- - - - - - - -	16365	24,498,073 – 24,498,256	-	6	192	69.99	-1.66	0.48	0.919913
11909	dm3.chr3R	24,500,532 – 24,500,629	- - - - - - - -	16366	24,500,532 – 24,500,629	+	6	100	70.44	-1.82	0.70	0.995003
11911	dm3.chr3R	24,511,166 – 24,511,266	- - - intron="intron;ID=intron_FBgn0039594:3_FBgn0039594:4;Name=CG9990-in;Parent=FBtr0305088;parent_type=mRNA" - - - -	16369	24,511,166 – 24,511,266	+	9	110	71.63	-2.03	0.46	0.975880
11912	dm3.chr3R	24,511,493 – 24,511,623	- - - intron="intron;ID=intron_FBgn0039594:3_FBgn0039594:4;Name=CG9990-in;Parent=FBtr0305088;parent_type=mRNA" - - - -	16371	24,511,519 – 24,511,623	+	9	117	67.02	-2.64	0.51	0.999320
11920	dm3.chr3R	24,532,763 – 24,532,860	- - - intron="intron;ID=intron_CG9995:8_CG9995:9;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16380	24,532,763 – 24,532,860	+	7	105	72.75	-2.84	0.44	0.989197
11921	dm3.chr3R	24,533,326 – 24,533,431	- - - intron="intron;ID=intron_CG9995:8_CG9995:9;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16381	24,533,326 – 24,533,431	+	11	113	67.47	-0.90	0.62	0.938350
11922	dm3.chr3R	24,542,626 – 24,542,751	- - - intron="intron;ID=intron_CG9995:15_CG9995:16;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16383	24,542,626 – 24,542,751	-	6	132	81.91	-2.75	0.57	0.973350
11925	dm3.chr3R	24,548,555 – 24,548,695	- - - intron="intron;ID=intron_CG9995:21_CG9995:22;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16387	24,548,555 – 24,548,656	+	6	117	79.41	-3.68	0.49	0.996939
11930	dm3.chr3R	24,555,392 – 24,555,503	- - - intron="intron;ID=intron_CG9995:27_CG9995:28;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16396	24,555,392 – 24,555,503	-	8	114	62.86	-1.39	0.36	0.901465
11931	dm3.chr3R	24,561,706 – 24,561,764	- - - - - - - -	16397	24,561,706 – 24,561,764	+	3	58	96.55	-1.51	1.03	0.954911
11934	dm3.chr3R	24,573,607 – 24,573,704	- - - - - - - -	16400	24,573,607 – 24,573,704	+	5	97	94.02	-2.15	0.87	0.904116
11941	dm3.chr3R	24,638,236 – 24,638,338	- - - intron="intron;ID=intron_FBgn0039600:6_FBgn0039600:8;Name=CG1646-in;Parent=FBtr0085322,FBtr0113301;parent_type=mRNA" - "Noncode_2.0=n3507_u3135_AJ544005_snoRNA_Drosophila\|2.5e-20" "unique_Noncode_2.0=u3135_snoRNA_Drosophila\|2.1e-20" -	16409	24,638,236 – 24,638,338	+	12	111	61.13	-0.49	0.59	0.954349
11943	dm3.chr3R	24,651,860 – 24,651,952	- - - intron="intron;ID=intron_CG1520:4_CG1520:5;Name=WASp-in;Parent=FBtr0085352,FBtr0085353,FBtr0085354;parent_type=mRNA" - - - -	16411	24,651,860 – 24,651,952	+	9	101	61.47	-1.08	0.47	0.951799
11945	dm3.chr3R	24,661,593 – 24,661,695	- - CDS="CDS;ID=CDS_CG1451:4_15;Name=Apc-cds;Parent=FBtr0085351;parent_type=mRNA" - - - - -	16414	24,661,593 – 24,661,695	-	11	114	91.82	-2.82	0.89	0.991990
11948	dm3.chr3R	24,683,435 – 24,683,529	- - - intron="intron;ID=intron_CG1448:1_CG1448:2;Name=inx3-in;Parent=FBtr0085350;parent_type=mRNA" - - - -	16417	24,683,435 – 24,683,529	+	5	108	68.06	-2.86	0.52	0.998902
11948	dm3.chr3R	24,683,435 – 24,683,529		16418	24,683,435 – 24,683,529	-	5	108	68.06	-2.23	0.57	0.996058
11949	dm3.chr3R	24,694,722 – 24,694,856	- - - intron="intron;ID=intron_FBgn0051048:12_FBgn0051048:14;Name=CG31048-in;Parent=FBtr0289996;parent_type=mRNA" - - - -	16419	24,694,722 – 24,694,816	+	12	109	76.25	-1.58	0.72	0.980052
11952	dm3.chr3R	24,759,566 – 24,759,661	- - - intron="intron;ID=intron_CG14521:1_CG14521:2;Name=CG14521-in;Parent=FBtr0085347;parent_type=mRNA" - - - -	16423	24,759,566 – 24,759,661	+	8	106	61.08	-1.12	0.43	0.929838
11954	dm3.chr3R	24,769,296 – 24,769,388	- - - intron="intron;ID=intron_CG14521:1_CG14521:2;Name=CG14521-in;Parent=FBtr0085347;parent_type=mRNA" - - - -	16425	24,769,296 – 24,769,388	+	5	92	99.13	-1.74	1.00	0.942359
11955	dm3.chr3R	24,772,365 – 24,772,477	- - - intron="intron;ID=intron_CG14521:1_CG14521:2;Name=CG14521-in;Parent=FBtr0085347;parent_type=mRNA" - - - -	16426	24,772,365 – 24,772,466	+	8	110	80.47	-2.74	0.59	0.983364
11962	dm3.chr3R	24,800,374 – 24,800,470	- - - - - - - -	16434	24,800,374 – 24,800,470	+	11	111	75.46	-1.92	0.51	0.930288
11968	dm3.chr3R	24,869,663 – 24,869,768	- - - intron="intron;ID=intron_FBgn0003093:7_FBgn0003093:8;Name=Pkc98E-in;Parent=FBtr0085359;parent_type=mRNA" - - - -	16441	24,869,663 – 24,869,768	+	7	114	71.82	-2.75	0.38	0.971789
11970	dm3.chr3R	24,889,428 – 24,889,499	- - - - - - - -	16443	24,889,428 – 24,889,499	-	6	76	75.87	-3.09	0.41	0.982622
11973	dm3.chr3R	24,896,557 – 24,896,673	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16446	24,896,557 – 24,896,673	+	6	120	64.82	-1.76	0.41	0.965221
11973	dm3.chr3R	24,896,557 – 24,896,673		16447	24,896,557 – 24,896,673	-	6	120	64.82	-2.02	0.37	0.969023
11976	dm3.chr3R	24,899,973 – 24,900,072	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16450	24,899,973 – 24,900,071	-	8	108	73.28	-1.78	0.67	0.987396
11976	dm3.chr3R	24,899,973 – 24,900,072		16451	24,899,973 – 24,900,072	-	8	106	74.02	-1.75	0.65	0.982152
11978	dm3.chr3R	24,903,180 – 24,903,287	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16453	24,903,180 – 24,903,287	-	6	112	75.22	-2.06	0.53	0.950514
11979	dm3.chr3R	24,908,836 – 24,908,927	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16454	24,908,836 – 24,908,927	-	3	93	94.22	-1.75	1.00	0.963202
11981	dm3.chr3R	24,916,030 – 24,916,188	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16456	24,916,030 – 24,916,122	+	4	94	95.89	-2.65	0.96	0.990138
				16457	24,916,030 – 24,916,122	-	4	94	95.89	-2.68	0.88	0.968629
				16458	24,916,050 – 24,916,155	+	7	120	67.96	-2.79	0.35	0.983585
				16459	24,916,050 – 24,916,155	-	7	120	67.96	-2.56	0.43	0.992191
				16460	24,916,089 – 24,916,188	+	7	116	64.48	-2.41	0.34	0.968856
11983	dm3.chr3R	24,921,290 – 24,921,381	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16464	24,921,290 – 24,921,381	-	6	91	86.75	-4.01	0.70	0.998693
11984	dm3.chr3R	24,923,237 – 24,923,339	- - - - - - - -	16465	24,923,237 – 24,923,339	+	12	113	72.96	-0.93	0.78	0.933313
11987	dm3.chr3R	24,930,217 – 24,930,320	- - CDS="CDS;ID=CDS_FBgn0039633:8_238;Name=CG11873-cds;Parent=FBtr0085365;parent_type=mRNA" - - - - -	16469	24,930,217 – 24,930,320	-	12	113	74.47	-1.73	0.52	0.949848
11990	dm3.chr3R	24,967,006 – 24,967,212	- - - intron="intron;ID=intron_CG14516:8_CG14516:2;Name=CG14516-in;Parent=FBtr0085383;parent_type=mRNA" - - - -	16476	24,967,122 – 24,967,212	+	3	90	96.30	-3.39	0.86	0.990909
11990	dm3.chr3R	24,967,006 – 24,967,212		16477	24,967,122 – 24,967,212	-	3	90	96.30	-1.69	1.00	0.948617
11993	dm3.chr3R	24,975,257 – 24,975,461	- - CDS="CDS;ID=CDS_FBgn0014869:5_213;Name=Pglym78-cds;Parent=FBtr0085384,FBtr0100482,FBtr0100483;parent_type=mRNA" - - - - -	16480	24,975,257 – 24,975,352	+	11	106	69.10	-0.72	0.62	0.928951
11993	dm3.chr3R	24,975,257 – 24,975,461		16481	24,975,263 – 24,975,367	+	12	112	72.81	-1.64	0.61	0.992383
11995	dm3.chr3R	24,998,157 – 24,998,264	- - - - - - - -	16484	24,998,157 – 24,998,264	+	11	117	62.11	-1.68	0.38	0.977919
11995	dm3.chr3R	24,998,157 – 24,998,264	- - - - - - - -	16485	24,998,157 – 24,998,264	-	11	117	62.11	-3.40	0.58	0.999978
11996	dm3.chr3R	24,998,518 – 24,998,608	- - - - - - - -	16486	24,998,518 – 24,998,608	-	12	114	75.38	-2.08	0.66	0.990163
12000	dm3.chr3R	25,013,629 – 25,013,726	- - - intron="intron;ID=intron_FBgn0039647:11_FBgn0039647:9;Name=CG14509-in;Parent=FBtr0113303;parent_type=mRNA" - - - -	16492	25,013,629 – 25,013,726	-	5	98	93.24	-3.87	0.90	0.998213
12004	dm3.chr3R	25,041,285 – 25,041,414	FBnoncoding="pre_miRNA;ID=FBtr0304462;Name=mir-279-RM;Parent=FBgn0262448;Alias=CR43015-RM;Dbxref=FlyBase_Annotation_IDs:CR43015-RM,miRBase:MI0000363" - - - "Rfam_10.0=RF00754;mir-279;AASU01038261.1/2067-2161\|2.8e-45" - - "mirBase_v16=dme-mir-279\|2.3e-52"	16498	25,041,285 – 25,041,392	+	11	117	79.66	-1.64	0.70	0.939453
				16499	25,041,313 – 25,041,414	+	12	116	90.00	-5.73	0.95	0.998337
				16500	25,041,313 – 25,041,414	-	12	116	90.00	-3.18	0.88	0.996771
12005	dm3.chr3R	25,042,904 – 25,043,006	FBnoncoding="pre_miRNA;ID=FBtr0304319;Name=mir-996-RM;Parent=FBgn0262404;Alias=CR42947-RM;Dbxref=FlyBase_Annotation_IDs:CR42947-RM,miRBase:MI0005857" - - - "Rfam_10.0=RF00948;mir-996;AANI01014375.1/48816-48912\|5.4e-46" - - "mirBase_v16=dme-mir-996\|1.1e-50"	16501	25,042,904 – 25,043,006	+	12	120	94.73	-4.04	0.97	0.998860
12005	dm3.chr3R	25,042,904 – 25,043,006		16502	25,042,904 – 25,043,006	-	12	120	94.73	-3.74	0.99	0.998763
12007	dm3.chr3R	25,056,878 – 25,057,011	- - CDS="CDS;ID=CDS_FBgn0028476:5_177;Name=CG15817-cds;Parent=FBtr0300832,FBtr0300833;parent_type=mRNA" - - - - -	16505	25,056,909 – 25,057,011	+	12	111	59.60	-2.25	0.32	0.992889
12010	dm3.chr3R	25,099,135 – 25,099,261	- - - - - - - -	16508	25,099,135 – 25,099,232	+	7	97	78.65	-2.06	0.68	0.971502
12015	dm3.chr3R	25,158,958 – 25,159,073	- - - - - - - -	16515	25,158,958 – 25,159,059	-	5	113	70.93	-1.73	0.62	0.974585
12015	dm3.chr3R	25,158,958 – 25,159,073	- - - - - - - -	16517	25,158,978 – 25,159,073	-	5	107	81.77	-2.01	0.73	0.921674
12016	dm3.chr3R	25,169,893 – 25,169,983	- - - - - - - -	16518	25,169,893 – 25,169,983	-	10	111	75.39	-2.73	0.46	0.985861
12017	dm3.chr3R	25,175,771 – 25,175,829	- - - - "Rfam_10.0=RF00177;SSU_rRNA_5;AASU01032674.1/61-551\|7.8e-22" - - -	16519	25,175,771 – 25,175,829	+	3	58	96.53	-2.52	0.98	0.989523
12023	dm3.chr3R	25,184,570 – 25,184,669	- - - - - - - -	16527	25,184,570 – 25,184,669	+	6	105	70.10	-1.49	0.67	0.985924
12023	dm3.chr3R	25,184,570 – 25,184,669	- - - - - - - -	16528	25,184,570 – 25,184,669	-	6	105	70.10	-1.16	0.60	0.919768
12026	dm3.chr3R	25,200,334 – 25,200,442	- - - - - - - -	16531	25,200,334 – 25,200,442	+	12	113	73.97	-1.38	0.62	0.943129
12031	dm3.chr3R	25,246,617 – 25,246,719	- - - intron="intron;ID=intron_FBgn0004369:5_FBgn0004369:6;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16538	25,246,617 – 25,246,719	+	5	114	84.49	-2.95	0.64	0.976016
12033	dm3.chr3R	25,251,181 – 25,251,327	- - - intron="intron;ID=intron_FBgn0004369:6_FBgn0004369:7;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16542	25,251,210 – 25,251,327	+	6	117	76.76	-3.19	0.58	0.998335
12034	dm3.chr3R	25,252,036 – 25,252,145	- - - intron="intron;ID=intron_FBgn0004369:6_FBgn0004369:7;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16543	25,252,036 – 25,252,145	+	6	112	74.95	-1.58	0.61	0.927297
12037	dm3.chr3R	25,257,421 – 25,257,576	- - - intron="intron;ID=intron_FBgn0004369:8_FBgn0004369:11;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16547	25,257,461 – 25,257,576	+	7	118	70.85	-1.47	0.64	0.961884
12041	dm3.chr3R	25,288,132 – 25,288,234	- - CDS="CDS;ID=CDS_FBgn0004369:10_224;Name=Ptp99A-cds;Parent=FBtr0085422,FBtr0085424;parent_type=mRNA" - - - - -	16553	25,288,132 – 25,288,234	-	12	120	72.08	-2.04	0.40	0.902452
12042	dm3.chr3R	25,292,749 – 25,292,839	- - - intron="intron;ID=intron_FBgn0004369:10_FBgn0004369:12;Name=Ptp99A-in;Parent=FBtr0085424;parent_type=mRNA" - - - -	16554	25,292,749 – 25,292,839	+	4	93	88.16	-2.77	0.71	0.947078
12043	dm3.chr3R	25,293,292 – 25,293,364	- - - intron="intron;ID=intron_FBgn0004369:10_FBgn0004369:12;Name=Ptp99A-in;Parent=FBtr0085424;parent_type=mRNA" - - - -	16555	25,293,292 – 25,293,364	+	4	72	56.44	-1.66	0.37	0.939118
12045	dm3.chr3R	25,299,365 – 25,299,474	- - - intron="intron;ID=intron_FBgn0004369:13_FBgn0004369:14;Name=Ptp99A-in;Parent=FBtr0085422,FBtr0085424,FBtr0085423,FBtr0303148;parent_type=mRNA" - - - -	16557	25,299,365 – 25,299,458	+	6	96	78.67	-1.73	0.77	0.956723
12045	dm3.chr3R	25,299,365 – 25,299,474		16559	25,299,365 – 25,299,474	+	7	114	70.79	-2.44	0.53	0.996839
12047	dm3.chr3R	25,306,170 – 25,306,262	- - - intron="intron;ID=intron_FBgn0004369:16_FBgn0004369:18;Name=Ptp99A-in;Parent=FBtr0303454;parent_type=mRNA" - - - -	16562	25,306,170 – 25,306,262	+	4	107	62.87	-0.85	0.79	0.931717
12050	dm3.chr3R	25,319,161 – 25,319,279	- - - - - - - -	16565	25,319,161 – 25,319,279	+	6	136	71.63	-1.55	0.55	0.919161
12053	dm3.chr3R	25,333,365 – 25,333,481	- - - - - - - -	16568	25,333,365 – 25,333,467	+	10	114	79.08	-1.65	0.83	0.964939
12053	dm3.chr3R	25,333,365 – 25,333,481	- - - - - - - -	16569	25,333,387 – 25,333,481	+	10	109	83.34	-2.00	0.82	0.967644
12057	dm3.chr3R	25,339,547 – 25,339,668	- - - - - - - -	16573	25,339,547 – 25,339,668	+	4	133	81.28	-2.41	0.80	0.983400
12057	dm3.chr3R	25,339,547 – 25,339,668	- - - - - - - -	16574	25,339,547 – 25,339,668	-	4	133	81.28	-3.06	0.76	0.995665
12059	dm3.chr3R	25,352,558 – 25,352,650	- - - - - - - -	16576	25,352,558 – 25,352,650	+	11	115	81.33	-2.20	0.63	0.934081
12060	dm3.chr3R	25,360,823 – 25,360,921	- - - - - - - -	16578	25,360,823 – 25,360,921	-	11	119	80.45	-3.12	0.61	0.995556
12061	dm3.chr3R	25,364,568 – 25,364,660	- - - - - - - -	16580	25,364,568 – 25,364,660	-	6	112	67.37	-1.81	0.45	0.901208
12063	dm3.chr3R	25,373,265 – 25,373,340	- - - - - - - -	16582	25,373,265 – 25,373,340	+	12	77	94.13	-2.17	0.90	0.952499
12063	dm3.chr3R	25,373,265 – 25,373,340	- - - - - - - -	16583	25,373,265 – 25,373,340	-	12	77	94.13	-2.36	0.91	0.975391
12064	dm3.chr3R	25,393,455 – 25,393,524	- - - - - - - -	16584	25,393,455 – 25,393,524	-	7	69	73.51	-2.17	0.43	0.900220
12067	dm3.chr3R	25,404,417 – 25,404,550	- - - - - - - -	16587	25,404,417 – 25,404,528	+	9	114	72.99	-1.98	0.56	0.990927
				16588	25,404,417 – 25,404,528	-	9	114	72.99	-1.66	0.59	0.981275
				16589	25,404,454 – 25,404,550	+	12	115	74.95	-1.92	0.63	0.979890
				16590	25,404,454 – 25,404,550	-	12	115	74.95	-2.12	0.65	0.991100
12068	dm3.chr3R	25,406,082 – 25,406,220	- - - - - - - -	16591	25,406,082 – 25,406,180	+	8	113	70.52	-1.85	0.47	0.955004
12069	dm3.chr3R	25,418,279 – 25,418,453	- - - intron="intron;ID=intron_FBgn0086361:1_FBgn0086361:4;Name=alph-in;Parent=FBtr0085442,FBtr0085443,FBtr0085444;parent_type=mRNA" - - - -	16596	25,418,279 – 25,418,453	-	4	192	85.05	-2.21	0.75	0.904916
12070	dm3.chr3R	25,438,661 – 25,438,764	- - - intron="intron;ID=intron_FBgn0086361:11_FBgn0086361:12;Name=alph-in;Parent=FBtr0085444;parent_type=mRNA" - - - -	16597	25,438,661 – 25,438,764	-	6	105	78.69	-1.86	0.70	0.954168
12078	dm3.chr3R	25,537,169 – 25,537,275	- - - - - - - -	16605	25,537,169 – 25,537,275	+	9	113	72.21	-1.89	0.47	0.964410
12081	dm3.chr3R	25,567,250 – 25,567,373	- - - intron="intron;ID=intron_FBgn0039690:6_FBgn0039690:8;Name=CG1969-in;Parent=FBtr0306104;parent_type=mRNA" - - - -	16610	25,567,250 – 25,567,356	+	11	113	74.14	-3.54	0.44	0.999049
12081	dm3.chr3R	25,567,250 – 25,567,373		16611	25,567,283 – 25,567,373	+	11	100	75.52	-2.19	0.68	0.995513
12083	dm3.chr3R	25,583,245 – 25,583,349	- - - - - - - -	16614	25,583,245 – 25,583,349	+	7	112	63.40	-1.52	0.40	0.911828
12084	dm3.chr3R	25,584,957 – 25,585,057	- - - - - - - -	16615	25,584,957 – 25,585,057	+	9	111	72.84	-1.30	0.58	0.938799
12085	dm3.chr3R	25,595,831 – 25,595,886	- - - intron="intron;ID=intron_FBgn0001297:1_FBgn0001297:5;Name=kay-in;Parent=FBtr0099988;parent_type=mRNA" - - - -	16617	25,595,831 – 25,595,886	+	5	55	87.82	-1.97	0.85	0.924272
12086	dm3.chr3R	25,596,689 – 25,596,786	- - - intron="intron;ID=intron_FBgn0001297:1_FBgn0001297:5;Name=kay-in;Parent=FBtr0099988;parent_type=mRNA" - - - -	16618	25,596,689 – 25,596,786	-	5	105	85.47	-2.32	0.80	0.968802
12087	dm3.chr3R	25,597,427 – 25,597,558	- - - intron="intron;ID=intron_FBgn0001297:1_FBgn0001297:5;Name=kay-in;Parent=FBtr0099988;parent_type=mRNA" - - - -	16619	25,597,427 – 25,597,533	+	7	108	78.61	-1.98	0.57	0.911815
12088	dm3.chr3R	25,598,582 – 25,598,725	- - - intron="intron;ID=intron_FBgn0001297:1_FBgn0001297:5;Name=kay-in;Parent=FBtr0099988;parent_type=mRNA" - - - -	16621	25,598,582 – 25,598,686	+	3	106	97.47	-3.04	0.86	0.976887
12093	dm3.chr3R	25,615,378 – 25,615,486	- - - intron="intron;ID=intron_FBgn0001297:3_FBgn0001297:5;Name=kay-in;Parent=FBtr0099990;parent_type=mRNA" - - - -	16627	25,615,378 – 25,615,486	+	3	108	89.14	-1.76	0.92	0.910442
12094	dm3.chr3R	25,624,903 – 25,625,023	- - CDS="CDS;ID=CDS_CG7837:1_40;Name=CG7837-cds;Parent=FBtr0085537;parent_type=mRNA" - - - - -	16628	25,624,903 – 25,625,023	-	12	120	68.29	-1.53	0.42	0.938877
12097	dm3.chr3R	25,644,210 – 25,644,332	- - - - - - - -	16632	25,644,221 – 25,644,332	+	4	111	83.17	-2.33	0.92	0.990554
12098	dm3.chr3R	25,654,901 – 25,654,996	- - - intron="intron;ID=intron_FBgn0039705:6_FBgn0039705:4;Name=CG31033-in;Parent=FBtr0085528,FBtr0085529,FBtr0085530,FBtr0300024;parent_type=mRNA" - - - -	16634	25,654,901 – 25,654,996	-	5	104	76.43	-2.87	0.42	0.942343
12102	dm3.chr3R	25,667,732 – 25,667,833	- - - intron="intron;ID=intron_FBgn0039709:1_FBgn0039709:2;Name=Cad99C-in;Parent=FBtr0085488;parent_type=mRNA" - - - -	16638	25,667,732 – 25,667,833	+	6	120	67.60	-1.64	0.54	0.953856
12103	dm3.chr3R	25,668,833 – 25,668,927	- - - intron="intron;ID=intron_FBgn0039709:2_FBgn0039709:3;Name=Cad99C-in;Parent=FBtr0085488;parent_type=mRNA" - - - -	16640	25,668,833 – 25,668,927	-	4	112	66.11	-2.88	0.64	0.999078
12105	dm3.chr3R	25,683,188 – 25,683,254	- - - - - - - -	16642	25,683,188 – 25,683,254	-	5	66	83.94	-2.07	0.78	0.945749
12108	dm3.chr3R	25,691,585 – 25,691,721	- - - intron="intron;ID=intron_FBgn0039714:7_FBgn0039714:5;Name=CG7816-in;Parent=FBtr0089921;parent_type=mRNA" - - - -	16646	25,691,585 – 25,691,692	-	5	107	91.48	-2.60	0.86	0.978169
				16647	25,691,614 – 25,691,721	+	5	111	89.18	-2.25	0.84	0.951343
				16648	25,691,614 – 25,691,721	-	5	111	89.18	-2.19	0.85	0.949292
12112	dm3.chr3R	25,744,999 – 25,745,108	- - - intron="intron;ID=intron_CG7875:3_CG7875:4;Name=trp-in;Parent=FBtr0085513;parent_type=mRNA" - - - -	16653	25,744,999 – 25,745,108	-	6	113	69.67	-1.82	0.44	0.939082
12118	dm3.chr3R	25,805,424 – 25,805,539	- - - - - - - -	16659	25,805,424 – 25,805,539	+	3	120	53.98	-3.21	0.35	0.998417
12118	dm3.chr3R	25,805,424 – 25,805,539	- - - - - - - -	16660	25,805,424 – 25,805,539	-	3	120	53.98	-2.35	0.31	0.939215
12122	dm3.chr3R	25,843,800 – 25,843,861	- - - intron="intron;ID=intron_CG7921:7_CG7921:8;Name=Mgat2-in;Parent=FBtr0085602;parent_type=mRNA" - - - -	16665	25,843,800 – 25,843,861	+	4	61	55.19	-1.77	0.81	0.998674
12122	dm3.chr3R	25,843,800 – 25,843,861		16666	25,843,800 – 25,843,861	-	4	61	55.19	-1.37	0.65	0.996168
12125	dm3.chr3R	25,882,496 – 25,882,601	- - - - - - - -	16670	25,882,496 – 25,882,601	+	5	112	79.58	-1.70	0.85	0.961055
12126	dm3.chr3R	25,886,324 – 25,886,428	- - - intron="intron;ID=intron_FBgn0015542:1_FBgn0015542:2;Name=sima-in;Parent=FBtr0085565,FBtr0114597;parent_type=mRNA" - - - -	16671	25,886,324 – 25,886,428	+	5	114	78.90	-1.63	0.76	0.916992
12130	dm3.chr3R	25,921,494 – 25,921,544	- - - intron="intron;ID=intron_FBgn0015542:7_FBgn0015542:8;Name=sima-in;Parent=FBtr0085565;parent_type=mRNA" - - - -	16676	25,921,494 – 25,921,544	+	3	62	68.39	-1.87	0.62	0.912905
12132	dm3.chr3R	25,967,950 – 25,968,053	- - - - - - - -	16678	25,967,950 – 25,968,053	-	7	118	61.52	-1.93	0.33	0.941191
12133	dm3.chr3R	26,005,263 – 26,005,332	- - - - - - - -	16679	26,005,263 – 26,005,332	-	7	73	59.20	-0.69	0.56	0.953514
12134	dm3.chr3R	26,009,765 – 26,009,922	- - - - - - - -	16681	26,009,792 – 26,009,888	+	7	107	77.86	-2.11	0.74	0.985202
				16682	26,009,792 – 26,009,888	-	7	107	77.86	-3.00	0.77	0.998518
				16683	26,009,823 – 26,009,922	+	8	118	62.94	-1.77	0.51	0.991069
				16684	26,009,823 – 26,009,922	-	8	118	62.94	-2.32	0.49	0.998017
12135	dm3.chr3R	26,012,888 – 26,012,980	- - - intron="intron;ID=intron_FBgn0039754:3_FBgn0039754:2;Name=CG9747-in;Parent=FBtr0085573;parent_type=mRNA" - - - -	16685	26,012,888 – 26,012,980	+	11	116	75.40	-2.06	0.53	0.959488
12135	dm3.chr3R	26,012,888 – 26,012,980		16686	26,012,888 – 26,012,980	-	11	116	75.40	-2.24	0.57	0.986877
12137	dm3.chr3R	26,015,033 – 26,015,094	- - - intron="intron;ID=intron_FBgn0039754:4_FBgn0039754:3;Name=CG9747-in;Parent=FBtr0085573;parent_type=mRNA" - - - -	16688	26,015,033 – 26,015,094	+	4	67	77.34	-2.18	0.67	0.950136
12140	dm3.chr3R	26,022,190 – 26,022,309	- - - - - - - -	16692	26,022,219 – 26,022,309	+	6	91	74.47	-1.95	0.57	0.970404
12141	dm3.chr3R	26,025,417 – 26,025,536	- - - intron="intron;ID=intron_FBgn0039756:6_FBgn0039756:5;Name=CG9743-in;Parent=FBtr0085571;parent_type=mRNA" - - - -	16694	26,025,417 – 26,025,520	+	4	103	81.55	-3.19	0.57	0.987157
12141	dm3.chr3R	26,025,417 – 26,025,536		16695	26,025,433 – 26,025,536	+	4	103	80.91	-3.48	0.73	0.998295
12143	dm3.chr3R	26,030,995 – 26,031,165	- - - - - - - -	16698	26,030,995 – 26,031,091	-	6	113	79.00	-2.69	0.53	0.968641
12144	dm3.chr3R	26,032,567 – 26,032,647	FBnoncoding="snoRNA;ID=FBtr0091777;Name=snoRNA:Psi28S-2149-RA;Parent=FBgn0086664;Alias=snoRNA:143-RA;Dbxref=FlyBase_Annotation_IDs:CR33776-RA,REFSEQ:NR_002505;score_text=Moderately" - - intron="intron;ID=intron_CG1883:3_CG1883:4;Name=RpS7-in;Parent=FBtr0089425,FBtr0089422,FBtr0089423;parent_type=mRNA" - "Noncode_2.0=n3515_u3143_AJ544013_snoRNA_Drosophila\|5.0e-27" "unique_Noncode_2.0=u3143_snoRNA_Drosophila\|4.3e-27" -	16700	26,032,567 – 26,032,647	-	12	82	80.45	-1.44	0.84	0.944636
12145	dm3.chr3R	26,032,942 – 26,033,013	FBnoncoding="snoRNA;ID=FBtr0113595;Name=snoRNA:Psi18S-1377d-RA;Parent=FBgn0083048;Dbxref=FlyBase_Annotation_IDs:CR34626-RA,REFSEQ:NR_003916;score_text=Strongly" - - intron="intron;ID=intron_CG1883:3_CG1883:4;Name=RpS7-in;Parent=FBtr0089425,FBtr0089422,FBtr0089423;parent_type=mRNA" "Rfam_10.0=RF00543;snopsi18S-1377;AAGH01008165.1/15188-15323\|1.2e-33" - - -	16702	26,032,942 – 26,033,013	-	12	72	74.57	-1.99	0.61	0.994730
12146	dm3.chr3R	26,033,042 – 26,033,188	FBnoncoding="snoRNA;ID=FBtr0113596;Name=snoRNA:Psi18S-1377c-RA;Parent=FBgn0083049;Dbxref=FlyBase_Annotation_IDs:CR34627-RA,REFSEQ:NR_003917;score_text=Strongly" - - intron="intron;ID=intron_CG1883:3_CG1883:4;Name=RpS7-in;Parent=FBtr0089425,FBtr0089422,FBtr0089423;parent_type=mRNA" "Rfam_10.0=RF00543;snopsi18S-1377;AASW01038454.1/969-1105\|4.0e-63" - - -	16704	26,033,042 – 26,033,188	-	12	168	67.52	-1.53	0.59	0.994564
12147	dm3.chr3R	26,033,256 – 26,033,352	FBnoncoding="snoRNA;ID=FBtr0113597;Name=snoRNA:Psi18S-1377b-RA;Parent=FBgn0083050;Dbxref=FlyBase_Annotation_IDs:CR34628-RA,REFSEQ:NR_003918;score_text=Strongly" - - intron="intron;ID=intron_CG1883:3_CG1883:4;Name=RpS7-in;Parent=FBtr0089425,FBtr0089422,FBtr0089423;parent_type=mRNA" "Rfam_10.0=RF00543;snopsi18S-1377;AC009733.5/161548-161685\|2.1e-48" - - -	16705	26,033,256 – 26,033,352	-	12	101	66.63	-1.30	0.46	0.966825
12148	dm3.chr3R	26,033,508 – 26,033,622	FBnoncoding="snoRNA;ID=FBtr0091751;Name=snoRNA:Psi18S-1377a-RA;Parent=FBgn0086665;Alias=snoRNA:328-RA;Dbxref=FlyBase_Annotation_IDs:CR33750-RA,REFSEQ:NR_002506;score_text=Moderately" - - intron="intron;ID=intron_CG1883:3_CG1883:4;Name=RpS7-in;Parent=FBtr0089425,FBtr0089422,FBtr0089423;parent_type=mRNA" "Rfam_10.0=RF00543;snopsi18S-1377;AAKO01001320.1/98717-98855\|3.8e-44" - - -	16706	26,033,508 – 26,033,622	+	10	129	72.74	-1.32	0.57	0.900287
12148	dm3.chr3R	26,033,508 – 26,033,622		16707	26,033,508 – 26,033,622	-	10	129	72.74	-2.10	0.81	0.997501
12149	dm3.chr3R	26,046,504 – 26,046,555	- - - - - - - -	16708	26,046,504 – 26,046,555	-	5	57	86.52	-2.15	0.94	0.985628
12151	dm3.chr3R	26,049,028 – 26,049,131	- - - - - - - -	16710	26,049,028 – 26,049,131	+	8	109	73.54	-2.60	0.32	0.904220
12154	dm3.chr3R	26,073,655 – 26,073,716	- - - - "Rfam_10.0=RF00005;tRNA;AANI01015473.1/3506-3585\|7.2e-10" - - -	16714	26,073,655 – 26,073,716	+	11	66	71.20	-0.55	0.79	0.927292
12154	dm3.chr3R	26,073,655 – 26,073,716		16715	26,073,655 – 26,073,716	-	11	66	71.20	-0.67	0.78	0.945753
12155	dm3.chr3R	26,074,338 – 26,074,448	FBnoncoding="tRNA;ID=FBtr0085636;Name=tRNA:CR31023-RA;Parent=FBgn0051023;Alias=CR31023-RA;Dbxref=FlyBase_Annotation_IDs:CR31023-RA;score_text=Weakly" tRNAscann="Leu_chr3R_trna38" - - "Rfam_10.0=RF00005;tRNA;AANI01015473.1/3506-3585\|8.2e-36" - - -	16717	26,074,338 – 26,074,448	-	13	120	82.75	-2.87	0.80	0.997905
12161	dm3.chr3R	26,094,991 – 26,095,084	- - - - - - - -	16723	26,094,991 – 26,095,084	-	7	104	77.16	-1.61	0.74	0.933257
12162	dm3.chr3R	26,095,998 – 26,096,072	- - - - - - - -	16724	26,095,998 – 26,096,072	-	3	74	67.57	-2.13	0.70	0.990537
12166	dm3.chr3R	26,169,225 – 26,169,340	- - - intron="intron;ID=intron_CG15532:2_CG15532:3;Name=hdc-in;Parent=FBtr0085619,FBtr0085621;parent_type=mRNA" - - - -	16729	26,169,225 – 26,169,318	+	10	104	70.55	-1.60	0.51	0.958558
12168	dm3.chr3R	26,174,084 – 26,174,144	- - - intron="intron;ID=intron_CG15532:2_CG15532:3;Name=hdc-in;Parent=FBtr0085619,FBtr0085621;parent_type=mRNA" - - - -	16732	26,174,084 – 26,174,144	+	5	66	85.15	-1.88	0.96	0.982495
12169	dm3.chr3R	26,196,350 – 26,196,438	- - - - - - - -	16733	26,196,350 – 26,196,438	+	11	110	73.13	-1.86	0.54	0.956827
12170	dm3.chr3R	26,199,145 – 26,199,258	- - - - - - - -	16736	26,199,145 – 26,199,258	-	11	119	73.63	-1.26	0.63	0.926426
12171	dm3.chr3R	26,201,573 – 26,201,708	- - - - - - - -	16737	26,201,573 – 26,201,679	+	5	113	56.31	-1.79	0.60	0.999155
				16738	26,201,573 – 26,201,679	-	5	113	56.31	-1.60	0.55	0.997592
				16739	26,201,608 – 26,201,708	+	5	101	59.92	-2.03	0.61	0.999425
				16740	26,201,608 – 26,201,708	-	5	101	59.92	-1.62	0.53	0.995742
12175	dm3.chr3R	26,233,022 – 26,233,076	- - - - - - - -	16745	26,233,022 – 26,233,076	-	12	69	70.37	-1.91	0.44	0.931301
12176	dm3.chr3R	26,264,391 – 26,264,482	- - - intron="intron;ID=intron_FBgn0039770:7_FBgn0039770:6;Name=CG15537-in;Parent=FBtr0113310;parent_type=mRNA" - - - -	16746	26,264,391 – 26,264,482	+	6	109	79.13	-2.35	0.61	0.960554
12182	dm3.chr3R	26,293,846 – 26,293,944	- - - intron="intron;ID=intron_CG31022:1_CG31022:2;Name=PH4alphaEFB-in;Parent=FBtr0085650;parent_type=mRNA" - - - -	16754	26,293,846 – 26,293,944	-	4	99	69.71	-1.84	0.58	0.935948
12185	dm3.chr3R	26,308,659 – 26,308,808	- - - intron="intron;ID=intron_CG31022:4_CG31022:5;Name=PH4alphaEFB-in;Parent=FBtr0085650;parent_type=mRNA" - - - -	16758	26,308,659 – 26,308,778	+	5	120	70.59	-2.03	0.43	0.918915
12185	dm3.chr3R	26,308,659 – 26,308,808		16759	26,308,699 – 26,308,808	+	4	110	72.38	-1.89	0.60	0.949901
12186	dm3.chr3R	26,321,036 – 26,321,222	- - - intron="intron;ID=intron_CG9726:1_CG9726:2;Name=PH4alphaMP-in;Parent=FBtr0085689;parent_type=mRNA" - - - -	16760	26,321,036 – 26,321,126	+	7	106	60.60	-1.16	0.45	0.914011
12190	dm3.chr3R	26,351,944 – 26,352,066	- - CDS="CDS;ID=CDS_CG2239:2_38;Name=jdp-cds;Parent=FBtr0085681,FBtr0085682,FBtr0085683;parent_type=mRNA" - - - - -	16766	26,351,944 – 26,352,066	-	14	137	68.02	-1.38	0.49	0.969543
12195	dm3.chr3R	26,392,898 – 26,392,991	- - - intron="intron;ID=intron_FBgn0082582:13_FBgn0082582:15;Name=tmod-in;Parent=FBtr0085662;parent_type=mRNA" - - - -	16772	26,392,898 – 26,392,991	-	5	101	92.92	-1.98	0.94	0.955109
12196	dm3.chr3R	26,393,007 – 26,393,098	- - - intron="intron;ID=intron_FBgn0082582:13_FBgn0082582:15;Name=tmod-in;Parent=FBtr0085662;parent_type=mRNA" - - - -	16774	26,393,007 – 26,393,098	-	5	95	81.86	-2.19	0.71	0.945389
12197	dm3.chr3R	26,395,082 – 26,395,223	- - - intron="intron;ID=intron_FBgn0082582:13_FBgn0082582:15;Name=tmod-in;Parent=FBtr0085662;parent_type=mRNA" - - - -	16775	26,395,082 – 26,395,193	+	7	119	74.92	-1.93	0.59	0.951810
12197	dm3.chr3R	26,395,082 – 26,395,223		16776	26,395,115 – 26,395,223	+	7	110	68.82	-3.25	0.43	0.999249
12199	dm3.chr3R	26,399,021 – 26,399,123	- - - intron="intron;ID=intron_FBgn0082582:18_FBgn0082582:19;Name=tmod-in;Parent=FBtr0113483;parent_type=mRNA" - - - -	16778	26,399,021 – 26,399,123	+	8	115	75.78	-2.40	0.45	0.933706
12201	dm3.chr3R	26,416,836 – 26,416,919	- - - - - - - -	16780	26,416,836 – 26,416,919	+	4	95	64.58	-2.27	0.47	0.982375
12205	dm3.chr3R	26,478,361 – 26,478,464	- - - - - - - -	16785	26,478,361 – 26,478,464	+	9	106	81.74	-2.48	0.61	0.979932
12207	dm3.chr3R	26,484,491 – 26,484,589	- - - - - - - -	16787	26,484,491 – 26,484,589	+	12	106	69.16	-1.06	0.66	0.987121
12211	dm3.chr3R	26,501,835 – 26,501,928	- - - - - - - -	16791	26,501,835 – 26,501,928	+	10	105	66.70	-1.70	0.48	0.987485
12211	dm3.chr3R	26,501,835 – 26,501,928	- - - - - - - -	16792	26,501,835 – 26,501,928	-	10	105	66.70	-2.52	0.49	0.999221
12212	dm3.chr3R	26,518,945 – 26,519,046	- - - - - - - -	16793	26,518,945 – 26,519,046	+	6	104	77.29	-1.48	0.83	0.956986
12216	dm3.chr3R	26,547,893 – 26,547,986	- - - - - - - -	16798	26,547,893 – 26,547,986	+	3	93	75.88	-2.74	0.63	0.973752
12218	dm3.chr3R	26,559,549 – 26,559,644	- - - intron="intron;ID=intron_FBgn0039798:4_FBgn0039798:3;Name=CG11313-in;Parent=FBtr0300700;parent_type=mRNA" - - - -	16801	26,559,549 – 26,559,644	+	5	103	90.94	-1.43	1.03	0.965749
12221	dm3.chr3R	26,572,446 – 26,572,539	FBnoncoding="ncRNA;ID=FBtr0306291;Name=CR43238-RA;Parent=FBgn0262883;Dbxref=FlyBase_Annotation_IDs:CR43238-RA;score_text=Weakly" - - - - - - -	16806	26,572,446 – 26,572,539	-	7	109	71.28	-1.87	0.51	0.958689
12224	dm3.chr3R	26,584,011 – 26,584,181	- - - - - - - -	16814	26,584,066 – 26,584,181	+	7	117	62.12	-1.76	0.36	0.932678
12224	dm3.chr3R	26,584,011 – 26,584,181	- - - - - - - -	16815	26,584,066 – 26,584,181	-	7	117	62.12	-1.75	0.38	0.952622
12228	dm3.chr3R	26,631,615 – 26,631,710	- - - intron="intron;ID=intron_CG12072:1_CG12072:2;Name=wts-in;Parent=FBtr0085720;parent_type=mRNA" - - - -	16820	26,631,615 – 26,631,710	-	6	97	68.81	-1.69	0.46	0.947074
12229	dm3.chr3R	26,638,804 – 26,638,925	- - - intron="intron;ID=intron_CG31012:1_CG31012:2;Name=cindr-in;Parent=FBtr0085704;parent_type=mRNA" - - - -	16822	26,638,822 – 26,638,925	+	7	109	70.64	-1.95	0.46	0.941941
12230	dm3.chr3R	26,657,144 – 26,657,237	- - - intron="intron;ID=intron_FBgn0039804:1_FBgn0039804:2;Name=CG15544-in;Parent=FBtr0085708;parent_type=mRNA" - - - -	16823	26,657,144 – 26,657,237	+	12	120	76.24	-2.93	0.39	0.968137
12232	dm3.chr3R	26,661,473 – 26,661,564	- - - intron="intron;ID=intron_FBgn0039804:2_FBgn0039804:3;Name=CG15544-in;Parent=FBtr0085708;parent_type=mRNA" - - - -	16825	26,661,473 – 26,661,564	+	6	99	88.33	-2.68	0.83	0.986555
12237	dm3.chr3R	26,714,579 – 26,714,678	- - CDS="CDS;ID=CDS_CG12070:1_76;Name=Sap-r-cds;Parent=FBtr0085713;parent_type=mRNA" - - - - -	16831	26,714,579 – 26,714,678	+	8	105	66.90	-1.40	0.62	0.988104
12241	dm3.chr3R	26,722,693 – 26,722,782	- - - intron="intron;ID=intron_FBgn0015032:1_FBgn0015032:2;Name=Cyp4c3-in;Parent=FBtr0085712;parent_type=mRNA" - - - -	16836	26,722,693 – 26,722,782	+	7	102	57.03	-0.75	0.57	0.979564
12242	dm3.chr3R	26,724,738 – 26,724,797	- - - intron="intron;ID=intron_FBgn0015032:5_FBgn0015032:6;Name=Cyp4c3-in;Parent=FBtr0085712;parent_type=mRNA" - - - -	16838	26,724,738 – 26,724,797	+	10	60	81.04	-2.21	0.69	0.983883
12243	dm3.chr3R	26,725,271 – 26,725,403	- - CDS="CDS;ID=CDS_FBgn0015032:6_224;Name=Cyp4c3-cds;Parent=FBtr0085712;parent_type=mRNA" - - - - -	16839	26,725,271 – 26,725,403	+	6	132	82.47	-2.82	0.68	0.992165
12245	dm3.chr3R	26,730,162 – 26,730,258	- - - - - - - -	16842	26,730,162 – 26,730,258	-	12	98	79.06	-1.58	0.69	0.956087
12246	dm3.chr3R	26,740,474 – 26,740,566	- - - intron="intron;ID=intron_FBgn0020912:1_FBgn0020912:3;Name=Ptx1-in;Parent=FBtr0089389,FBtr0089391;parent_type=mRNA" - - - -	16843	26,740,474 – 26,740,566	+	12	118	78.25	-2.14	0.55	0.927628
12246	dm3.chr3R	26,740,474 – 26,740,566		16844	26,740,474 – 26,740,566	-	12	118	78.25	-1.95	0.64	0.950889
12249	dm3.chr3R	26,760,619 – 26,760,709	- - - - - - - -	16847	26,760,619 – 26,760,709	-	11	113	89.29	-1.86	0.91	0.952270
12255	dm3.chr3R	26,813,583 – 26,813,673	- - - intron="intron;ID=intron_CG12073:1_CG12073:2;Name=5-HT7-in;Parent=FBtr0085746;parent_type=mRNA" - - - -	16855	26,813,583 – 26,813,673	+	3	90	97.04	-2.32	0.94	0.965245
12257	dm3.chr3R	26,833,165 – 26,833,259	- - - intron="intron;ID=intron_CG12073:1_CG12073:2;Name=5-HT7-in;Parent=FBtr0085746;parent_type=mRNA" - - - -	16857	26,833,165 – 26,833,259	+	4	97	86.24	-2.28	0.78	0.928000
12261	dm3.chr3R	26,885,094 – 26,885,219	- - - intron="intron;ID=intron_CG2048:6_CG2048:2;Name=dco-in;Parent=FBtr0085744;parent_type=mRNA" - - - -	16861	26,885,094 – 26,885,219	-	7	134	78.69	-2.95	0.75	0.998498
12267	dm3.chr3R	26,967,547 – 26,967,662	- - - intron="intron;ID=intron_FBgn0013973:3_FBgn0013973:4;Name=Gycbeta100B-in;Parent=FBtr0085753;parent_type=mRNA" - - - -	16868	26,967,568 – 26,967,662	+	11	110	74.61	-2.09	0.55	0.964909
12269	dm3.chr3R	26,984,207 – 26,984,317	- - CDS="CDS;ID=CDS_FBgn0086704:1_179;Name=stops-cds;Parent=FBtr0085781,FBtr0085782,FBtr0301346;parent_type=mRNA" intron="intron;ID=intron_FBgn0013973:16_FBgn0013973:17;Name=Gycbeta100B-in;Parent=FBtr0085753;parent_type=mRNA" - - - -	16870	26,984,207 – 26,984,317	+	11	118	74.75	-2.09	0.43	0.911071
12269	dm3.chr3R	26,984,207 – 26,984,317		16871	26,984,207 – 26,984,317	-	11	118	74.75	-1.56	0.56	0.923218
12273	dm3.chr3R	27,013,787 – 27,013,877	- - - intron="intron;ID=intron_FBgn0051004:15_FBgn0051004:14;Name=CG31004-in;Parent=FBtr0085779,FBtr0085780,FBtr0300960,FBtr0300961;parent_type=mRNA" - - - -	16876	27,013,787 – 27,013,877	+	10	106	67.83	-1.83	0.56	0.995359
12273	dm3.chr3R	27,013,787 – 27,013,877		16877	27,013,787 – 27,013,877	-	10	106	67.83	-1.21	0.55	0.955355
12274	dm3.chr3R	27,019,658 – 27,019,764	- - CDS="CDS;ID=CDS_CG1480:1_82;Name=bnk-cds;Parent=FBtr0085754;parent_type=mRNA" intron="intron;ID=intron_FBgn0051004:18_FBgn0051004:16;Name=CG31004-in;Parent=FBtr0085779,FBtr0300960,FBtr0300961;parent_type=mRNA" - - - -	16878	27,019,658 – 27,019,764	-	6	106	82.96	-2.13	0.78	0.973675
12276	dm3.chr3R	27,041,959 – 27,042,069	- - - - - - - -	16880	27,041,959 – 27,042,069	+	12	118	66.69	-2.03	0.31	0.923056
12277	dm3.chr3R	27,043,283 – 27,043,383	FBnoncoding="ncRNA;ID=FBtr0085775;Name=RNaseP:RNA-RA;Parent=FBgn0046696;Dbxref=FlyBase_Annotation_IDs:CR32868-RA,REFSEQ:NR_002092;score_text=Weakly" - - intron="intron;ID=intron_FBgn0039830:3_FBgn0039830:2;Name=CG1746-in;Parent=FBtr0306237;parent_type=mRNA" "Rfam_10.0=RF00009;RNaseP_nuc;AAKO01001336.1/331254-331549\|3.5e-50" "Noncode_2.0=n1871_u376_AF434763_RNase\|8.8e-51" "unique_Noncode_2.0=u376_RNase\|7.7e-51" -	16882	27,043,283 – 27,043,383	-	14	116	72.82	-1.05	0.70	0.960557
12278	dm3.chr3R	27,044,630 – 27,044,734	- - CDS="CDS;ID=CDS_FBgn0039830:5_247;Name=CG1746-cds;Parent=FBtr0085772;parent_type=mRNA" - - - - -	16883	27,044,630 – 27,044,734	+	13	115	66.29	-1.72	0.34	0.942251
12279	dm3.chr3R	27,049,020 – 27,049,077	- - - intron="intron;ID=intron_FBgn0039831:2_FBgn0039831:5;Name=CG12054-in;Parent=FBtr0085758;parent_type=mRNA" - - - -	16884	27,049,020 – 27,049,077	+	5	59	93.32	-2.49	0.90	0.977794
12280	dm3.chr3R	27,059,671 – 27,059,803	- - - - - - - -	16887	27,059,708 – 27,059,803	+	11	108	61.54	-0.89	0.44	0.914824
12281	dm3.chr3R	27,072,062 – 27,072,164	- - - intron="intron;ID=intron_CG31005:1_CG31005:2;Name=qless-in;Parent=FBtr0085769;parent_type=mRNA" - - - -	16888	27,072,062 – 27,072,164	+	9	105	69.62	-2.10	0.48	0.992024
12282	dm3.chr3R	27,073,409 – 27,073,506	- - - intron="intron;ID=intron_CG31005:1_CG31005:2;Name=qless-in;Parent=FBtr0085769;parent_type=mRNA" - - - -	16890	27,073,409 – 27,073,506	+	5	113	80.90	-3.37	0.67	0.997828
12283	dm3.chr3R	27,075,291 – 27,075,384	- - - intron="intron;ID=intron_CG31005:1_CG31005:2;Name=qless-in;Parent=FBtr0085769;parent_type=mRNA" - - - -	16891	27,075,291 – 27,075,384	+	6	97	80.99	-2.26	0.58	0.905014
12284	dm3.chr3R	27,078,035 – 27,078,125	- - - - - - - -	16892	27,078,035 – 27,078,125	-	7	105	59.61	-0.85	0.50	0.931211
12285	dm3.chr3R	27,128,851 – 27,128,903	- - CDS="CDS;ID=CDS_CG11340:2_73;Name=CG11340-cds;Parent=FBtr0085766;parent_type=mRNA" - - - - -	16893	27,128,851 – 27,128,903	+	3	52	98.72	-1.86	1.00	0.958249
12293	dm3.chr3R	27,179,826 – 27,179,919	- - - intron="intron;ID=intron_FBgn0085376:6_FBgn0085376:7;Name=CG34347-in;Parent=FBtr0290046,FBtr0301051;parent_type=mRNA" - - - -	16901	27,179,826 – 27,179,919	+	9	99	74.12	-1.60	0.73	0.991434
12295	dm3.chr3R	27,184,347 – 27,184,469	- - - intron="intron;ID=intron_FBgn0085376:10_FBgn0085376:11;Name=CG34347-in;Parent=FBtr0290046;parent_type=mRNA" - - - -	16904	27,184,373 – 27,184,469	+	11	108	84.25	-1.77	0.82	0.943082
12296	dm3.chr3R	27,186,543 – 27,186,674	- - - - - - - -	16905	27,186,543 – 27,186,634	+	13	118	62.77	-0.55	0.59	0.934040
12298	dm3.chr3R	27,190,389 – 27,190,490	- - - intron="intron;ID=intron_FBgn0085376:16_FBgn0085376:17;Name=CG34347-in;Parent=FBtr0290046;parent_type=mRNA" - - - -	16909	27,190,389 – 27,190,490	+	8	110	76.13	-2.27	0.51	0.957056
12299	dm3.chr3R	27,200,096 – 27,200,159	- - - - - - - -	16910	27,200,096 – 27,200,159	+	7	63	66.24	-1.22	0.45	0.905907
12300	dm3.chr3R	27,216,556 – 27,216,647	- - - - - - - -	16911	27,216,556 – 27,216,647	-	4	105	84.20	-2.13	0.81	0.947005
12303	dm3.chr3R	27,236,196 – 27,236,263	- - - intron="intron;ID=intron_CG17998:2_CG17998:3;Name=Gprk2-in;Parent=FBtr0085788;parent_type=mRNA" - - - -	16914	27,236,196 – 27,236,263	-	7	68	66.81	-1.76	0.40	0.961562
12308	dm3.chr3R	27,272,086 – 27,272,199	- - - intron="intron;ID=intron_CG17998:3_CG17998:4;Name=Gprk2-in;Parent=FBtr0085788;parent_type=mRNA" - - - -	16919	27,272,086 – 27,272,199	+	5	116	86.67	-2.19	0.76	0.900183
12308	dm3.chr3R	27,272,086 – 27,272,199		16920	27,272,086 – 27,272,199	-	5	116	86.67	-2.55	0.77	0.968550
12310	dm3.chr3R	27,290,838 – 27,290,932	- - - - - - - -	16922	27,290,838 – 27,290,932	+	8	106	65.76	-1.87	0.61	0.997043
12313	dm3.chr3R	27,300,914 – 27,301,011	- - - - - - - -	16926	27,300,914 – 27,301,011	+	12	120	81.10	-2.33	0.64	0.974287
12315	dm3.chr3R	27,317,119 – 27,317,219	- - - - - - - -	16929	27,317,119 – 27,317,219	+	6	108	90.19	-2.45	0.82	0.959378
12319	dm3.chr3R	27,337,057 – 27,337,181	- - - - - - - -	16935	27,337,089 – 27,337,181	+	8	99	87.70	-3.14	0.76	0.992960
12319	dm3.chr3R	27,337,057 – 27,337,181	- - - - - - - -	16936	27,337,089 – 27,337,181	-	8	99	87.70	-2.51	0.85	0.985139
12321	dm3.chr3R	27,346,833 – 27,346,923	- - - - - - - -	16939	27,346,833 – 27,346,923	-	9	105	68.25	-1.42	0.50	0.950514
12324	dm3.chr3R	27,366,449 – 27,366,607	- - - - - - - -	16942	27,366,449 – 27,366,567	-	12	123	75.27	-2.38	0.61	0.993512
12327	dm3.chr3R	27,385,556 – 27,385,647	- - - intron="intron;ID=intron_FBgn0039852:5_FBgn0039852:6;Name=nyo-in;Parent=FBtr0300875,FBtr0300876;parent_type=mRNA" - - - -	16946	27,385,556 – 27,385,647	+	8	103	71.18	-1.72	0.64	0.987836
12329	dm3.chr3R	27,397,602 – 27,397,676	- - - - - - - -	16948	27,397,602 – 27,397,676	+	7	78	62.19	-1.97	0.59	0.999564
12329	dm3.chr3R	27,397,602 – 27,397,676	- - - - - - - -	16949	27,397,602 – 27,397,676	-	7	78	62.19	-1.88	0.41	0.993574
12331	dm3.chr3R	27,403,047 – 27,403,145	- - CDS="CDS;ID=CDS_FBgn0043900:2_177;Name=pygo-cds;Parent=FBtr0085806;parent_type=mRNA" - - - - -	16951	27,403,047 – 27,403,145	+	15	120	82.22	-2.82	0.49	0.946905
12333	dm3.chr3R	27,404,405 – 27,404,500	- - CDS="CDS;ID=CDS_FBgn0043900:2_177;Name=pygo-cds;Parent=FBtr0085806;parent_type=mRNA" - - - - -	16953	27,404,405 – 27,404,500	-	12	109	75.20	-2.60	0.37	0.948477
12334	dm3.chr3R	27,405,209 – 27,405,314	- - CDS="CDS;ID=CDS_FBgn0043900:2_177;Name=pygo-cds;Parent=FBtr0085806;parent_type=mRNA" - - - - -	16954	27,405,209 – 27,405,314	+	12	111	84.33	-2.24	0.65	0.935068
12335	dm3.chr3R	27,426,135 – 27,426,356	- - CDS="CDS;ID=CDS_CG11525:5_70;Name=CycG-cds;Parent=FBtr0085801;parent_type=mRNA" - - - - -	16956	27,426,171 – 27,426,291	+	13	120	88.46	-2.44	0.77	0.971617
12335	dm3.chr3R	27,426,135 – 27,426,356		16957	27,426,171 – 27,426,291	-	13	120	88.46	-3.25	0.64	0.990093
12337	dm3.chr3R	27,430,010 – 27,430,218	- - - intron="intron;ID=intron_CG11525:7_CG11525:9;Name=CycG-in;Parent=FBtr0085802;parent_type=mRNA" - - - -	16960	27,430,010 – 27,430,124	-	7	123	75.42	-1.73	0.80	0.985873
12340	dm3.chr3R	27,443,945 – 27,444,043	- - - - - - - -	16964	27,443,945 – 27,444,043	+	7	120	70.19	-2.35	0.57	0.996539
12341	dm3.chr3R	27,444,090 – 27,444,202	- - - - - - - -	16965	27,444,090 – 27,444,202	+	12	118	82.41	-2.36	0.73	0.987139
12349	dm3.chr3R	27,498,558 – 27,498,708	- - - intron="intron;ID=intron_CG1815:3_CG1815:4;Name=CG1815-in;Parent=FBtr0085822,FBtr0085823,FBtr0085824;parent_type=mRNA" - - - -	16973	27,498,558 – 27,498,672	+	6	118	85.72	-2.36	0.70	0.930944
12352	dm3.chr3R	27,510,912 – 27,510,998	- - - - - - - -	16978	27,510,912 – 27,510,998	-	7	88	69.68	-1.77	0.51	0.986508
12355	dm3.chr3R	27,533,771 – 27,533,866	- - CDS="CDS;ID=CDS_FBgn0261583:1_221;Name=CG42693-cds;Parent=FBtr0302894;parent_type=mRNA" - - - - -	16981	27,533,771 – 27,533,866	+	5	117	61.33	-1.66	0.59	0.995160
12355	dm3.chr3R	27,533,771 – 27,533,866		16982	27,533,771 – 27,533,866	-	5	117	61.33	-2.89	0.52	0.999707
12359	dm3.chr3R	27,556,332 – 27,556,425	- - CDS="CDS;ID=CDS_FBgn0003870:8_227;Name=ttk-cds;Parent=FBtr0085826,FBtr0085828,FBtr0085830;parent_type=mRNA" - - - - -	16986	27,556,332 – 27,556,425	+	12	96	77.65	-2.04	0.50	0.938715
12360	dm3.chr3R	27,588,277 – 27,588,431	- - - - - - - -	16987	27,588,277 – 27,588,431	+	5	159	74.60	-1.79	0.64	0.952072
12360	dm3.chr3R	27,588,277 – 27,588,431	- - - - - - - -	16988	27,588,277 – 27,588,431	-	5	159	74.60	-1.86	0.61	0.947486
12366	dm3.chr3R	27,665,635 – 27,665,725	- - - - - - - -	16994	27,665,635 – 27,665,725	-	8	96	80.25	-1.64	0.73	0.932104
12367	dm3.chr3R	27,687,807 – 27,687,884	- - - intron="intron;ID=intron_FBgn0011224:8_FBgn0011224:7;Name=heph-in;Parent=FBtr0085887,FBtr0085888,FBtr0085879,FBtr0085880,FBtr0085881,FBtr0085882,FBtr0085883,FBtr0085884,FBtr0085885,FBtr0085886,FBtr0085878,FBtr0112864,FBtr0112865,FBtr0112866,FBtr0300263,FBtr0300264,FBtr0300265,FBtr0300266,FBtr0300267,FBtr0300268,FBtr0300269,FBtr0300270;parent_type=mRNA" - - - -	16995	27,687,807 – 27,687,884	+	12	89	91.35	-2.37	0.91	0.984048
12371	dm3.chr3R	27,742,104 – 27,742,210	- - - intron="intron;ID=intron_FBgn0011224:14_FBgn0011224:13;Name=heph-in;Parent=FBtr0112864;parent_type=mRNA" - - - -	16999	27,742,104 – 27,742,196	-	6	92	85.22	-2.11	0.75	0.936253
12376	dm3.chr3R	27,813,233 – 27,813,310	- - - intron="intron;ID=intron_CG2003:5_CG2003:2;Name=CG2003-in;Parent=FBtr0085871;parent_type=mRNA" - - - -	17005	27,813,233 – 27,813,310	-	6	83	72.82	-1.18	0.70	0.904752
12378	dm3.chr3R	27,851,656 – 27,851,747	- - - - - - - -	17007	27,851,656 – 27,851,747	+	3	113	79.94	-3.12	0.79	0.996349
12379	dm3.chr3R	27,890,893 – 27,890,983	- - - intron="intron;ID=intron_CG1483:1_CG1483:3;Name=Map205-in;Parent=FBtr0085876;parent_type=mRNA" - - - -	17008	27,890,893 – 27,890,983	+	6	91	78.85	-2.30	0.60	0.968928
12383	dm3.chr4	215,182 – 215,281	- - - - - - - -	17012	215,182 – 215,281	+	3	100	57.86	-3.34	0.49	0.999428
12384	dm3.chr4	269,187 – 269,296	- - - - - - - -	17014	269,187 – 269,296	+	4	116	49.78	-2.17	0.49	0.999490
12384	dm3.chr4	269,187 – 269,296	- - - - - - - -	17015	269,187 – 269,296	-	4	116	49.78	-1.82	0.54	0.999190
12390	dm3.chr4	479,805 – 479,871	- - - - - - - -	17021	479,805 – 479,871	-	3	66	50.78	-1.81	0.38	0.950950
12395	dm3.chr4	567,034 – 567,147	- - CDS="CDS;ID=CDS_CG1981:6_1037;Name=Thd1-cds;Parent=FBtr0089106;parent_type=mRNA" - - - - -	17027	567,034 – 567,134	-	5	100	65.92	-1.57	0.69	0.989037
12397	dm3.chr4	577,998 – 578,130	- - - - - - - -	17030	577,998 – 578,099	-	6	120	79.44	-1.90	0.72	0.934980
12397	dm3.chr4	577,998 – 578,130	- - - - - - - -	17031	578,035 – 578,130	-	6	115	75.87	-2.17	0.56	0.934171
12398	dm3.chr4	614,138 – 614,262	- - - - - - - -	17032	614,138 – 614,248	+	3	110	60.30	-3.05	0.48	0.999133
				17033	614,138 – 614,248	-	3	110	60.30	-2.80	0.32	0.970658
				17034	614,172 – 614,262	+	3	96	55.67	-2.52	0.54	0.999110
				17035	614,172 – 614,262	-	3	96	55.67	-1.95	0.38	0.928944
12404	dm3.chr4	724,813 – 725,007	- - - intron="intron;ID=intron_CG1464:1_CG1464:2;Name=ey-in;Parent=FBtr0089235;parent_type=mRNA" - - - -	17042	724,813 – 724,931	+	6	120	65.09	-1.49	0.44	0.915447
12404	dm3.chr4	724,813 – 725,007		17044	724,893 – 725,007	-	5	117	83.59	-3.07	0.70	0.993718
12405	dm3.chr4	733,901 – 734,045	- - - intron="intron;ID=intron_CG1464:3_CG1464:4;Name=ey-in;Parent=FBtr0089235,FBtr0089236,FBtr0100395,FBtr0100396;parent_type=mRNA" - - - -	17046	733,928 – 734,039	-	5	120	74.82	-1.99	0.71	0.976180
12409	dm3.chr4	817,323 – 817,380	- - - - - - - -	17051	817,323 – 817,380	-	5	57	87.89	-1.80	0.89	0.927926
12412	dm3.chr4	827,716 – 828,036	- - - - - - - -	17055	827,716 – 827,836	-	4	120	80.75	-2.35	0.73	0.971213
12412	dm3.chr4	827,716 – 828,036	- - - - - - - -	17058	827,916 – 828,036	-	4	120	83.40	-2.98	0.79	0.994512
12413	dm3.chr4	847,410 – 847,465	- - - intron="intron;ID=intron_CG11153:5_CG11153:6;Name=Sox102F-in;Parent=FBtr0100600;parent_type=mRNA" - - - -	17059	847,410 – 847,465	+	3	55	93.33	-1.90	1.02	0.983952
12415	dm3.chr4	906,258 – 906,308	- - - intron="intron;ID=intron_CG2999:4_CG2999:28;Name=unc-13-in;Parent=FBtr0089246;parent_type=mRNA" - - - -	17061	906,258 – 906,308	-	3	50	86.67	-3.06	0.69	0.969187
12416	dm3.chr4	910,362 – 910,452	- - CDS="CDS;ID=CDS_CG2999:50_1034;Name=unc-13-cds;Parent=FBtr0089247;parent_type=mRNA" - - - - -	17062	910,362 – 910,452	+	10	91	60.60	-1.56	0.36	0.966606
12417	dm3.chr4	954,350 – 954,476	- - - - - - - -	17063	954,350 – 954,476	+	5	132	52.15	-1.71	0.35	0.965410
12417	dm3.chr4	954,350 – 954,476	- - - - - - - -	17064	954,350 – 954,476	-	5	132	52.15	-2.46	0.50	0.999787
12420	dm3.chr4	1,016,876 – 1,016,994	- - - intron="intron;ID=intron_CG11186:2_CG11186:3;Name=toy-in;Parent=FBtr0089185;parent_type=mRNA" - - - -	17067	1,016,876 – 1,016,992	+	3	118	92.09	-2.37	0.90	0.967078
				17068	1,016,876 – 1,016,992	-	3	118	92.09	-3.25	0.88	0.994301
				17069	1,016,878 – 1,016,994	+	3	118	91.53	-2.39	0.90	0.970825
				17070	1,016,878 – 1,016,994	-	3	118	91.53	-3.22	0.88	0.994332
12421	dm3.chr4	1,020,679 – 1,020,822	- - - intron="intron;ID=intron_CG11186:5_CG11186:6;Name=toy-in;Parent=FBtr0089185;parent_type=mRNA" - - - -	17072	1,020,716 – 1,020,822	+	4	114	54.83	-1.81	0.38	0.976260
12427	dm3.chr4	1,268,748 – 1,268,907	- - CDS="CDS;ID=CDS_CG33653:22_1034;Name=Caps-cds;Parent=FBtr0091630;parent_type=mRNA" - - - - -	17079	1,268,748 – 1,268,867	-	13	120	80.84	-2.70	0.47	0.973697
12432	dm3.chrXHet	151,595 – 151,651	- - - - - - - -	17085	151,595 – 151,651	+	3	56	66.07	-2.35	1.02	0.995159
12434	dm3.chrXHet	159,485 – 159,596	- - - - - - - -	17088	159,485 – 159,581	-	3	108	51.77	-1.44	0.58	0.989060
12434	dm3.chrXHet	159,485 – 159,596	- - - - - - - -	17089	159,500 – 159,596	-	3	111	47.95	-2.70	0.48	0.999634
12435	dm3.chrXHet	160,605 – 160,738	- - - - - - - -	17091	160,605 – 160,738	-	3	133	61.71	-2.31	0.43	0.975541
12436	dm3.chrXHet	176,208 – 176,361	- - - - - - - -	17093	176,208 – 176,361	-	4	160	52.87	-2.25	0.29	0.980405
12437	dm3.chrXHet	176,676 – 176,806	- - - - - - - -	17094	176,676 – 176,788	+	4	113	61.19	-1.83	0.47	0.984551
				17095	176,676 – 176,788	-	4	113	61.19	-2.47	0.38	0.991087
				17096	176,690 – 176,806	+	4	116	65.20	-2.82	0.49	0.998509
				17097	176,690 – 176,806	-	4	116	65.20	-2.69	0.45	0.996149
12439	dm3.chrXHet	198,851 – 198,910	- - - - - - - -	17099	198,851 – 198,910	+	3	59	50.59	-1.96	0.50	0.996979
12442	dm3.chrXHet	203,355 – 203,543	- - - - - - - -	17102	203,355 – 203,448	+	4	93	63.06	-2.64	0.42	0.996726
				17103	203,390 – 203,488	+	4	98	63.08	-1.49	0.62	0.987473
				17104	203,412 – 203,528	+	4	116	57.16	-1.30	0.50	0.974858
12447	dm3.chrX	157,681 – 157,732	- - - - - - - -	17110	157,681 – 157,732	+	6	53	75.57	-1.33	0.77	0.935302
12449	dm3.chrX	170,335 – 170,390	- - - intron="intron;ID=intron_CG3114:8_CG3114:9;Name=ewg-in;Parent=FBtr0100582,FBtr0089441,FBtr0100577,FBtr0100578,FBtr0100579,FBtr0100580,FBtr0100581;parent_type=mRNA" - - - -	17112	170,335 – 170,390	+	11	55	88.34	-3.02	0.69	0.985039
12450	dm3.chrX	174,207 – 174,311	FBnoncoding="pre_miRNA;ID=FBtr0304371;Name=mir-980-RM;Parent=FBgn0262266;Alias=CR42973-RM;Dbxref=FlyBase_Annotation_IDs:CR42973-RM,miRBase:MI0005837" - - intron="intron;ID=intron_CG3777:1_CG3777:2;Name=CG3777-in;Parent=FBtr0070066;parent_type=mRNA" - - - "mirBase_v16=dme-mir-980\|1.7e-49"	17114	174,207 – 174,311	-	12	109	71.54	-3.51	0.61	0.999926
12456	dm3.chrX	283,415 – 283,562	- - - - - - - -	17122	283,453 – 283,562	+	4	116	77.33	-2.58	0.63	0.980107
12457	dm3.chrX	283,689 – 283,782	- - - - - - - -	17124	283,689 – 283,782	-	5	115	68.62	-2.53	0.39	0.960498
12461	dm3.chrX	337,044 – 337,098	- - - - - - - -	17128	337,044 – 337,098	+	3	54	96.30	-2.53	0.84	0.906266
12463	dm3.chrX	352,240 – 352,392	- - - - - - - -	17131	352,240 – 352,352	+	5	120	87.50	-3.06	0.80	0.992601
				17132	352,240 – 352,352	-	5	120	87.50	-2.43	0.73	0.912607
				17133	352,274 – 352,392	+	5	120	74.11	-2.55	0.73	0.996633
				17134	352,274 – 352,392	-	5	120	74.11	-2.52	0.51	0.972299
12464	dm3.chrX	370,473 – 370,587	- - - - - - - -	17135	370,473 – 370,579	-	6	108	80.06	-1.65	0.72	0.903749
12465	dm3.chrX	390,368 – 390,464	- - - - - - - -	17138	390,368 – 390,464	+	6	118	70.71	-1.29	0.73	0.945078
12466	dm3.chrX	395,738 – 395,834	- - - intron="intron;ID=intron_FBgn0004648:4_FBgn0004648:5;Name=svr-in;Parent=FBtr0070083,FBtr0290017;parent_type=mRNA" - - - -	17141	395,738 – 395,828	-	6	109	84.91	-2.81	0.79	0.991090
12466	dm3.chrX	395,738 – 395,834		17143	395,738 – 395,834	-	6	115	86.45	-2.81	0.77	0.985952
12469	dm3.chrX	415,820 – 415,882	- - - intron="intron;ID=intron_FBgn0000570:4_FBgn0000570:3;Name=elav-in;Parent=FBtr0070091;parent_type=mRNA" - - - -	17146	415,820 – 415,882	-	5	63	95.19	-2.41	0.89	0.956439
12471	dm3.chrX	420,222 – 420,286	- - - - - - - -	17150	420,222 – 420,286	-	5	71	76.02	-1.50	0.77	0.924630
12472	dm3.chrX	424,119 – 424,265	- - - - - - - -	17151	424,119 – 424,236	-	3	118	92.66	-2.85	0.79	0.952180
12477	dm3.chrX	445,764 – 445,820	- - - intron="intron;ID=intron_CG7727:1_CG7727:2;Name=Appl-in;Parent=FBtr0070109;parent_type=mRNA" - - - -	17157	445,764 – 445,820	+	5	57	73.63	-1.19	0.81	0.946925
12481	dm3.chrX	488,362 – 488,475	- - - intron="intron;ID=intron_FBgn0003986:3_FBgn0003986:4;Name=vnd-in;Parent=FBtr0070110,FBtr0110929;parent_type=mRNA" - - - -	17163	488,362 – 488,475	-	3	113	95.87	-2.76	0.98	0.993875
12486	dm3.chrX	519,222 – 519,289	- - - - - - - -	17169	519,222 – 519,289	+	5	69	82.15	-1.87	0.81	0.941560
12486	dm3.chrX	519,222 – 519,289	- - - - - - - -	17170	519,222 – 519,289	-	5	69	82.15	-2.01	0.80	0.957692
12489	dm3.chrX	552,182 – 552,369	- - - - - - - -	17174	552,182 – 552,302	-	4	120	76.73	-2.04	0.66	0.930909
12489	dm3.chrX	552,182 – 552,369	- - - - - - - -	17176	552,249 – 552,369	-	5	120	74.32	-1.96	0.67	0.975451
12493	dm3.chrX	578,145 – 578,213	- - - - - - - -	17181	578,145 – 578,213	-	9	79	66.01	-1.24	0.52	0.962122
12495	dm3.chrX	580,329 – 580,508	- - - - - - - -	17183	580,329 – 580,428	-	5	106	88.31	-2.13	0.91	0.973892
12498	dm3.chrX	586,050 – 586,169	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17188	586,050 – 586,169	+	5	120	92.65	-3.25	0.75	0.980291
12502	dm3.chrX	592,613 – 592,692	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17193	592,613 – 592,692	+	4	89	63.53	-1.77	0.68	0.994592
12503	dm3.chrX	597,788 – 597,901	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17194	597,788 – 597,901	-	5	120	82.64	-2.26	0.76	0.970427
12510	dm3.chrX	633,078 – 633,202	- - - intron="intron;ID=intron_FBgn0021764:12_FBgn0021764:13;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302259,FBtr0302260;parent_type=mRNA" - - - -	17203	633,109 – 633,202	+	5	99	74.00	-1.96	0.55	0.933053
12511	dm3.chrX	641,559 – 641,682	- - CDS="CDS;ID=CDS_FBgn0021764:20_995;Name=sdk-cds;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302259,FBtr0302260;parent_type=mRNA" - - - - -	17205	641,559 – 641,679	-	15	120	82.35	-2.86	0.38	0.918203
12512	dm3.chrX	648,268 – 648,318	- - - - - - - -	17207	648,268 – 648,318	+	3	50	96.00	-1.39	1.02	0.930034
12514	dm3.chrX	653,152 – 653,270	- - - - - - - -	17210	653,152 – 653,270	-	5	120	77.63	-3.64	0.64	0.999170
12516	dm3.chrX	658,023 – 658,142	FBnoncoding="snoRNA;ID=FBtr0091922;Name=snoRNA:Psi28S-2179-RA;Parent=FBgn0086666;Alias=snoRNA:734-RA;Dbxref=FlyBase_Annotation_IDs:CR33918-RA,REFSEQ:NR_002459;score_text=Weakly" - - intron="intron;ID=intron_FBgn0015288:2_FBgn0015288:1;Name=RpL22-in;Parent=FBtr0070148;parent_type=mRNA" - "Noncode_2.0=n3524_u3151_AJ544022_snoRNA_Drosophila\|3.8e-41" "unique_Noncode_2.0=u3151_snoRNA_Drosophila\|3.3e-41" -	17214	658,049 – 658,142	-	11	114	65.61	-0.88	0.61	0.966487
12517	dm3.chrX	662,492 – 662,676	- - - - - - - -	17215	662,492 – 662,676	+	3	188	89.01	-2.85	0.77	0.964136
12522	dm3.chrX	699,819 – 699,934	- - - intron="intron;ID=intron_FBgn0026874:4_FBgn0026874:3;Name=CG13358-in;Parent=FBtr0305568;parent_type=mRNA" - - - -	17221	699,819 – 699,934	+	4	119	73.82	-2.28	0.55	0.950181
12523	dm3.chrX	700,848 – 700,949	- - - intron="intron;ID=intron_CG7359:2_CG7359:3;Name=Sec22-in;Parent=FBtr0070141;parent_type=mRNA" - - - -	17222	700,848 – 700,949	+	5	103	77.93	-1.99	0.66	0.935072
12527	dm3.chrX	752,304 – 752,405	- - - intron="intron;ID=intron_FBgn0259100:12_FBgn0259100:11;Name=CG42248-in;Parent=FBtr0299511;parent_type=mRNA" - - - -	17226	752,304 – 752,405	-	5	102	75.35	-2.01	0.62	0.965105
12530	dm3.chrX	761,443 – 761,508	- - - - - - - -	17230	761,443 – 761,508	+	12	65	95.15	-2.47	0.90	0.973562
12533	dm3.chrX	778,673 – 778,803	- - - - - - - -	17234	778,673 – 778,774	-	4	103	75.25	-2.38	0.85	0.994719
12535	dm3.chrX	796,530 – 796,614	- - - - - - - -	17237	796,530 – 796,614	+	6	84	96.83	-1.83	0.95	0.913523
12537	dm3.chrX	809,017 – 809,133	- - - - - - - -	17240	809,017 – 809,133	-	5	116	86.21	-2.95	0.83	0.994221
12539	dm3.chrX	814,347 – 814,484	- - - - - - - -	17242	814,347 – 814,449	+	10	121	90.74	-2.76	0.78	0.972833
12544	dm3.chrX	846,175 – 846,225	- - - - - - - -	17250	846,175 – 846,225	+	4	50	93.00	-2.94	0.84	0.982978
12545	dm3.chrX	846,764 – 846,877	- - - - - - - -	17251	846,764 – 846,877	-	8	118	92.38	-1.81	0.90	0.902088
12546	dm3.chrX	848,406 – 848,497	- - - - - - - -	17252	848,406 – 848,497	+	8	106	78.29	-2.18	0.53	0.917601
12547	dm3.chrX	853,248 – 853,351	- - - - - - - -	17254	853,248 – 853,351	-	3	103	93.85	-3.02	0.93	0.994043
12548	dm3.chrX	853,626 – 853,752	- - - - - - - -	17255	853,626 – 853,729	-	7	118	60.05	-2.04	0.30	0.937311
				17256	853,653 – 853,752	+	6	99	76.57	-2.91	0.48	0.991479
				17257	853,653 – 853,752	-	6	99	76.57	-3.84	0.50	0.999412
12557	dm3.chrX	869,445 – 869,546	- - - - - - - -	17269	869,445 – 869,546	+	6	116	73.79	-2.39	0.54	0.982223
12563	dm3.chrX	903,655 – 903,794	- - - - - - - -	17275	903,655 – 903,755	-	5	120	80.72	-2.04	0.71	0.915526
				17276	903,692 – 903,794	+	5	120	76.48	-2.51	0.71	0.992301
				17277	903,692 – 903,794	-	5	120	76.48	-2.66	0.66	0.992634
12564	dm3.chrX	905,592 – 905,665	- - - - - - - -	17278	905,592 – 905,665	+	7	86	55.66	-0.71	0.46	0.904304
12568	dm3.chrX	950,834 – 951,008	- - - - - - - -	17284	950,905 – 951,008	+	4	103	68.45	-2.05	0.51	0.968905
12572	dm3.chrX	989,866 – 989,940	- - - intron="intron;ID=intron_FBgn0040397:6_FBgn0040397:5;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17289	989,866 – 989,940	-	4	74	85.81	-2.40	0.80	0.966158
12578	dm3.chrX	1,003,647 – 1,003,703	- - - intron="intron;ID=intron_FBgn0040397:7_FBgn0040397:6;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17297	1,003,647 – 1,003,703	+	4	62	77.05	-1.56	0.83	0.934076
12579	dm3.chrX	1,008,153 – 1,008,262	- - - intron="intron;ID=intron_FBgn0040397:7_FBgn0040397:6;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17299	1,008,165 – 1,008,262	-	11	111	75.83	-2.18	0.61	0.992568
12581	dm3.chrX	1,013,352 – 1,013,485	- - - intron="intron;ID=intron_FBgn0040397:7_FBgn0040397:6;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17301	1,013,352 – 1,013,485	+	4	168	67.48	-2.37	0.42	0.967499
12581	dm3.chrX	1,013,352 – 1,013,485		17302	1,013,352 – 1,013,485	-	4	168	67.48	-2.26	0.45	0.971906
12589	dm3.chrX	1,046,601 – 1,046,671	- - - - - - - -	17311	1,046,601 – 1,046,671	+	3	70	77.20	-3.57	0.99	0.998800
12590	dm3.chrX	1,048,335 – 1,048,479	- - - - - - - -	17313	1,048,335 – 1,048,439	+	3	104	97.43	-2.26	0.95	0.964693
12591	dm3.chrX	1,072,845 – 1,072,919	- - - - - - - -	17317	1,072,845 – 1,072,919	+	10	86	55.67	-1.47	0.41	0.991502
12596	dm3.chrX	1,100,272 – 1,100,386	- - - - - - - -	17322	1,100,272 – 1,100,381	+	5	114	80.97	-3.73	0.34	0.961253
				17323	1,100,272 – 1,100,381	-	5	114	80.97	-4.91	0.53	0.999673
				17325	1,100,277 – 1,100,386	-	5	114	82.51	-4.42	0.57	0.999295
12597	dm3.chrX	1,102,098 – 1,102,212	- - - - - - - -	17326	1,102,098 – 1,102,212	-	4	120	69.46	-2.35	0.44	0.955625
12598	dm3.chrX	1,103,720 – 1,103,789	- - - - - - - -	17327	1,103,720 – 1,103,789	-	6	78	69.67	-1.60	0.61	0.978442
12602	dm3.chrX	1,125,365 – 1,125,500	- - - intron="intron;ID=intron_FBgn0026875:14_FBgn0026875:13;Name=CG3638-in;Parent=FBtr0301968,FBtr0070246;parent_type=mRNA" - - - -	17332	1,125,365 – 1,125,463	-	6	101	70.26	-1.55	0.50	0.928117
				17335	1,125,396 – 1,125,500	+	5	115	77.69	-1.69	0.72	0.904682
				17336	1,125,396 – 1,125,500	-	5	115	77.69	-1.85	0.71	0.936588
12611	dm3.chrX	1,164,958 – 1,165,055	- - - intron="intron;ID=intron_FBgn0028550:6_FBgn0028550:5;Name=Atf3-in;Parent=FBtr0070244;parent_type=mRNA" - - - -	17346	1,164,958 – 1,165,055	+	5	97	80.36	-2.00	0.76	0.955798
12612	dm3.chrX	1,166,389 – 1,166,478	- - - intron="intron;ID=intron_FBgn0028550:6_FBgn0028550:5;Name=Atf3-in;Parent=FBtr0070244;parent_type=mRNA" - - - -	17347	1,166,389 – 1,166,478	+	3	89	97.75	-2.06	0.93	0.914758
12613	dm3.chrX	1,173,744 – 1,173,799	- - - - - - - -	17348	1,173,744 – 1,173,799	-	6	60	78.41	-2.14	0.67	0.974506
12615	dm3.chrX	1,188,650 – 1,188,747	- - - - - - - -	17350	1,188,650 – 1,188,747	-	4	100	76.01	-1.96	0.75	0.965267
12616	dm3.chrX	1,190,914 – 1,191,015	- - - - - - - -	17351	1,190,914 – 1,191,015	+	5	101	96.44	-1.98	0.97	0.959846
12620	dm3.chrX	1,208,269 – 1,208,384	- - - intron="intron;ID=intron_FBgn0025641:15_FBgn0025641:14;Name=DAAM-in;Parent=FBtr0070239;parent_type=mRNA" - - - -	17356	1,208,269 – 1,208,384	-	6	116	77.25	-2.67	0.53	0.988848
12623	dm3.chrX	1,210,709 – 1,210,817	- - - intron="intron;ID=intron_FBgn0025641:16_FBgn0025641:15;Name=DAAM-in;Parent=FBtr0070239;parent_type=mRNA" - - - -	17359	1,210,709 – 1,210,817	+	5	109	77.54	-2.50	0.48	0.920761
12627	dm3.chrX	1,215,988 – 1,216,085	- - - intron="intron;ID=intron_FBgn0025641:16_FBgn0025641:15;Name=DAAM-in;Parent=FBtr0070239;parent_type=mRNA" - - - -	17364	1,215,989 – 1,216,085	+	3	97	53.63	-2.90	0.25	0.969260
12628	dm3.chrX	1,230,298 – 1,230,407	- - - - - - - -	17365	1,230,298 – 1,230,407	-	6	109	68.48	-1.40	0.49	0.905468
12635	dm3.chrX	1,320,699 – 1,320,751	- - - intron="intron;ID=intron_FBgn0259108:1_FBgn0259108:3;Name=futsch-in;Parent=FBtr0112628;parent_type=mRNA" - - - -	17375	1,320,699 – 1,320,751	-	4	52	98.08	-3.67	1.00	0.998337
12655	dm3.chrX	1,448,136 – 1,448,299	- - - intron="intron;ID=intron_FBgn0025390:5_FBgn0025390:3;Name=Mur2B-in;Parent=FBtr0303587;parent_type=mRNA" - - - -	17397	1,448,136 – 1,448,226	+	7	96	73.10	-1.74	0.53	0.934216
12658	dm3.chrX	1,466,332 – 1,466,422	- - - intron="intron;ID=intron_FBgn0025390:8_FBgn0025390:7;Name=Mur2B-in;Parent=FBtr0070284,FBtr0303587;parent_type=mRNA" - - - -	17402	1,466,332 – 1,466,422	+	4	90	70.90	-2.04	0.65	0.978613
12658	dm3.chrX	1,466,332 – 1,466,422		17403	1,466,332 – 1,466,422	-	4	90	70.90	-4.32	0.80	0.999692
12660	dm3.chrX	1,473,891 – 1,473,941	- - - intron="intron;ID=intron_FBgn0000210:1_FBgn0000210:7;Name=br-in;Parent=FBtr0303564;parent_type=mRNA" - - - -	17405	1,473,891 – 1,473,941	+	3	50	100.00	-2.20	1.00	0.979015
12660	dm3.chrX	1,473,891 – 1,473,941		17406	1,473,891 – 1,473,941	-	3	50	100.00	-1.63	1.00	0.918258
12662	dm3.chrX	1,515,572 – 1,515,631	- - - intron="intron;ID=intron_FBgn0000210:5_FBgn0000210:7;Name=br-in;Parent=FBtr0300428;parent_type=mRNA" - - - -	17409	1,515,572 – 1,515,631	-	5	59	87.29	-3.37	0.68	0.991794
12663	dm3.chrX	1,518,957 – 1,519,012	- - - intron="intron;ID=intron_FBgn0000210:7_FBgn0000210:8;Name=br-in;Parent=FBtr0070261,FBtr0070262,FBtr0070263,FBtr0070265,FBtr0070266,FBtr0300427,FBtr0300428,FBtr0300429,FBtr0300430,FBtr0303562,FBtr0303563,FBtr0303564;parent_type=mRNA" - - - -	17410	1,518,957 – 1,519,012	-	4	56	90.77	-2.00	0.90	0.939441
12666	dm3.chrX	1,538,042 – 1,538,105	- - - - - - - -	17414	1,538,042 – 1,538,105	-	4	63	94.26	-2.52	1.00	0.994020
12667	dm3.chrX	1,540,580 – 1,540,648	- - - - - - - -	17415	1,540,580 – 1,540,648	+	7	69	61.29	-1.76	0.71	0.999610
12668	dm3.chrX	1,542,489 – 1,542,638	- - CDS="CDS;ID=CDS_FBgn0000210:15_963;Name=br-cds;Parent=FBtr0300430;parent_type=mRNA" - - - - -	17417	1,542,489 – 1,542,588	+	5	99	69.48	-0.97	0.73	0.911539
12668	dm3.chrX	1,542,489 – 1,542,638		17418	1,542,489 – 1,542,588	-	5	99	69.48	-1.36	0.67	0.959067
12672	dm3.chrX	1,552,141 – 1,552,282	- - - intron="intron;ID=intron_FBgn0000210:19_FBgn0000210:20;Name=br-in;Parent=FBtr0303562;parent_type=mRNA" - - - -	17423	1,552,141 – 1,552,244	-	7	116	67.87	-1.75	0.45	0.904955
12672	dm3.chrX	1,552,141 – 1,552,282		17425	1,552,181 – 1,552,282	-	5	116	88.88	-2.39	0.85	0.968119
12674	dm3.chrX	1,556,021 – 1,556,076	- - - - - - - -	17428	1,556,021 – 1,556,076	-	4	62	85.19	-2.10	0.84	0.946749
12675	dm3.chrX	1,563,544 – 1,563,640	- - - - - - - -	17429	1,563,544 – 1,563,640	-	7	106	62.55	-1.82	0.36	0.942790
12682	dm3.chrX	1,584,019 – 1,584,128	- - - - - - - -	17438	1,584,019 – 1,584,128	+	9	128	60.12	-1.51	0.36	0.955696
12682	dm3.chrX	1,584,019 – 1,584,128	- - - - - - - -	17439	1,584,019 – 1,584,128	-	9	128	60.12	-1.37	0.40	0.968518
12683	dm3.chrX	1,585,684 – 1,585,785	- - - intron="intron;ID=intron_FBgn0023531:19_FBgn0023531:18;Name=CG32809-in;Parent=FBtr0089815,FBtr0089814;parent_type=mRNA" - - - -	17440	1,585,684 – 1,585,785	+	5	119	76.86	-2.62	0.68	0.990993
12684	dm3.chrX	1,586,442 – 1,586,642	- - - - - - - -	17443	1,586,567 – 1,586,642	-	9	76	85.69	-2.43	0.62	0.901186
12686	dm3.chrX	1,596,127 – 1,596,180	- - - - - - - -	17446	1,596,127 – 1,596,180	-	7	54	78.55	-1.77	0.72	0.955284
12688	dm3.chrX	1,605,277 – 1,605,340	- - - - - - - -	17449	1,605,277 – 1,605,340	-	4	63	84.08	-2.66	0.63	0.938085
12690	dm3.chrX	1,606,091 – 1,606,217	- - - - - - - -	17451	1,606,091 – 1,606,183	-	5	109	83.35	-2.95	0.63	0.977875
				17453	1,606,118 – 1,606,216	-	5	109	85.06	-2.78	0.74	0.983851
				17454	1,606,127 – 1,606,217	-	5	101	85.06	-2.38	0.71	0.926997
12694	dm3.chrX	1,629,215 – 1,629,309	- - - - - - - -	17458	1,629,215 – 1,629,309	+	3	94	95.68	-2.07	0.95	0.952570
12694	dm3.chrX	1,629,215 – 1,629,309	- - - - - - - -	17459	1,629,215 – 1,629,309	-	3	94	95.68	-2.08	0.96	0.961615
12697	dm3.chrX	1,639,812 – 1,639,877	- - - - - - - -	17463	1,639,812 – 1,639,877	+	3	65	57.95	-0.97	0.77	0.973565
12697	dm3.chrX	1,639,812 – 1,639,877	- - - - - - - -	17464	1,639,812 – 1,639,877	-	3	65	57.95	-1.30	0.55	0.946643
12704	dm3.chrX	1,665,526 – 1,665,622	- - - - - - - -	17471	1,665,526 – 1,665,622	-	3	96	96.53	-2.12	0.93	0.936945
12705	dm3.chrX	1,667,646 – 1,667,757	- - - - - - - -	17472	1,667,646 – 1,667,757	+	7	122	58.61	-2.57	0.40	0.999524
12706	dm3.chrX	1,672,738 – 1,672,828	- - - intron="intron;ID=intron_FBgn0026086:6_FBgn0026086:7;Name=Adar-in;Parent=FBtr0070299,FBtr0070300,FBtr0100557,FBtr0305497,FBtr0305498;parent_type=mRNA" - - - -	17473	1,672,738 – 1,672,828	+	3	92	76.95	-2.68	0.76	0.991501
12706	dm3.chrX	1,672,738 – 1,672,828		17474	1,672,738 – 1,672,828	-	3	92	76.95	-2.05	0.75	0.941688
12709	dm3.chrX	1,682,883 – 1,682,986	FBnoncoding="pre_miRNA;ID=FBtr0304184;Name=mir-981-RM;Parent=FBgn0262178;Alias=CR42885-RM;Dbxref=FlyBase_Annotation_IDs:CR42885-RM,miRBase:MI0005838" - - - - - - "mirBase_v16=dsi-mir-981\|2.8e-54"	17477	1,682,883 – 1,682,986	-	12	112	82.96	-4.93	0.79	0.999634
12712	dm3.chrX	1,693,260 – 1,693,366	- - - - - - - -	17480	1,693,260 – 1,693,366	-	8	109	81.01	-2.45	0.57	0.953462
12713	dm3.chrX	1,697,523 – 1,697,604	- - - - - - - -	17481	1,697,523 – 1,697,604	-	5	82	63.90	-2.58	0.34	0.959164
12714	dm3.chrX	1,698,216 – 1,698,268	- - - - - - - -	17482	1,698,216 – 1,698,268	-	6	57	93.27	-2.07	0.94	0.963489
12716	dm3.chrX	1,703,227 – 1,703,319	- - - - - - - -	17484	1,703,227 – 1,703,319	+	5	96	65.54	-1.58	0.56	0.986252
12718	dm3.chrX	1,710,783 – 1,710,858	- - - - - - - -	17488	1,710,783 – 1,710,858	+	5	75	75.47	-2.59	0.59	0.993439
12721	dm3.chrX	1,726,029 – 1,726,130	- - - intron="intron;ID=intron_FBgn0261548:1_FBgn0261548:8;Name=CG42666-in;Parent=FBtr0302658;parent_type=mRNA" - - - -	17492	1,726,029 – 1,726,130	-	8	113	72.64	-2.36	0.51	0.989816
12723	dm3.chrX	1,730,410 – 1,730,510	- - - intron="intron;ID=intron_FBgn0261548:2_FBgn0261548:8;Name=CG42666-in;Parent=FBtr0302654;parent_type=mRNA" - - - -	17494	1,730,410 – 1,730,510	+	7	120	77.25	-3.34	0.53	0.996174
12726	dm3.chrX	1,774,509 – 1,774,561	- - - - - - - -	17499	1,774,509 – 1,774,561	-	6	58	72.22	-1.89	0.59	0.970141
12731	dm3.chrX	1,795,716 – 1,795,836	- - CDS="CDS;ID=CDS_FBgn0052803:6_1031;Name=CG32803-cds;Parent=FBtr0070356;parent_type=mRNA" intron="intron;ID=intron_FBgn0052803:6_FBgn0052803:5;Name=CG32803-in;Parent=FBtr0070356;parent_type=mRNA" - - - -	17504	1,795,716 – 1,795,836	+	6	121	72.15	-1.92	0.52	0.965966
12734	dm3.chrX	1,831,627 – 1,831,681	- - - - - - - -	17508	1,831,627 – 1,831,681	+	3	55	70.73	-2.13	0.58	0.930379
12744	dm3.chrX	1,923,245 – 1,923,351	- - - intron="intron;ID=intron_FBgn0000667:9_FBgn0000667:6;Name=Actn-in;Parent=FBtr0070344;parent_type=mRNA" - - - -	17519	1,923,245 – 1,923,351	+	3	120	74.57	-2.07	0.76	0.968337
12745	dm3.chrX	1,926,117 – 1,926,262	- - - intron="intron;ID=intron_FBgn0000667:11_FBgn0000667:10;Name=Actn-in;Parent=FBtr0070345,FBtr0070343,FBtr0070344,FBtr0303048,FBtr0303049;parent_type=mRNA" - - - -	17521	1,926,142 – 1,926,262	+	5	120	89.00	-2.12	0.88	0.959757
12746	dm3.chrX	1,927,814 – 1,927,950	- - - intron="intron;ID=intron_FBgn0000667:11_FBgn0000667:10;Name=Actn-in;Parent=FBtr0070345,FBtr0070343,FBtr0070344,FBtr0303048,FBtr0303049;parent_type=mRNA" - - - -	17522	1,927,814 – 1,927,950	-	6	145	75.14	-1.85	0.54	0.900816
12748	dm3.chrX	1,954,239 – 1,954,350	- - CDS="CDS;ID=CDS_FBgn0025625:8_981;Name=CG4290-cds;Parent=FBtr0070340;parent_type=mRNA" - - - - -	17524	1,954,239 – 1,954,350	-	15	111	77.92	-2.30	0.44	0.975551
12749	dm3.chrX	1,955,333 – 1,955,437	- - - intron="intron;ID=intron_FBgn0025625:9_FBgn0025625:8;Name=CG4290-in;Parent=FBtr0070340;parent_type=mRNA" - - - -	17525	1,955,333 – 1,955,437	-	6	111	80.21	-2.23	0.61	0.936693
12751	dm3.chrX	1,956,445 – 1,956,570	- - - - - - - -	17527	1,956,445 – 1,956,544	-	7	117	64.75	-1.68	0.49	0.969520
12758	dm3.chrX	1,992,161 – 1,992,213	- - - intron="intron;ID=intron_CG3954:3_CG3954:4;Name=csw-in;Parent=FBtr0070378;parent_type=mRNA" - - - -	17536	1,992,161 – 1,992,213	+	6	54	74.68	-1.49	0.62	0.909792
12758	dm3.chrX	1,992,161 – 1,992,213		17537	1,992,161 – 1,992,213	-	6	54	74.68	-2.03	0.50	0.932457
12762	dm3.chrX	2,007,916 – 2,008,055	- - - - - - - -	17543	2,007,916 – 2,008,055	-	5	153	69.97	-2.00	0.51	0.928349
12767	dm3.chrX	2,035,346 – 2,035,454	- - - - - - - -	17548	2,035,346 – 2,035,442	-	5	102	76.80	-2.20	0.67	0.960311
12767	dm3.chrX	2,035,346 – 2,035,454	- - - - - - - -	17549	2,035,356 – 2,035,454	-	4	102	75.14	-2.56	0.71	0.990939
12769	dm3.chrX	2,058,091 – 2,058,221	- - - - - - - -	17554	2,058,124 – 2,058,221	-	4	121	84.78	-2.21	0.87	0.972679
12770	dm3.chrX	2,074,891 – 2,074,949	- - - - - - - -	17555	2,074,891 – 2,074,949	-	7	58	63.55	-1.40	0.44	0.978555
12772	dm3.chrX	2,089,124 – 2,089,229	- - - intron="intron;ID=intron_CG3456:1_CG3456:2;Name=Mct1-in;Parent=FBtr0070393;parent_type=mRNA" - - - -	17557	2,089,124 – 2,089,229	+	5	122	72.25	-2.22	0.67	0.992803
12773	dm3.chrX	2,089,997 – 2,090,112	- - - intron="intron;ID=intron_CG3456:1_CG3456:2;Name=Mct1-in;Parent=FBtr0070393;parent_type=mRNA" - - - -	17559	2,089,997 – 2,090,112	+	3	115	89.28	-2.44	0.84	0.955761
12775	dm3.chrX	2,101,144 – 2,101,225	- - - intron="intron;ID=intron_CG33548:3_CG33548:2;Name=msta-in;Parent=FBtr0070422;parent_type=mRNA" - - - -	17562	2,101,144 – 2,101,225	-	5	87	86.56	-2.96	0.63	0.957675
12777	dm3.chrX	2,116,829 – 2,116,932	- - - - - - - -	17564	2,116,829 – 2,116,932	+	8	117	75.61	-2.22	0.49	0.917672
12780	dm3.chrX	2,136,747 – 2,136,837	- - CDS="CDS;ID=CDS_CG3218:1_890;Name=fs(1)K10-cds;Parent=FBtr0070396;parent_type=mRNA" - - - - -	17567	2,136,747 – 2,136,837	-	3	90	57.14	-1.67	0.60	0.985376
12784	dm3.chrX	2,156,437 – 2,156,567	- - - - - - - -	17572	2,156,437 – 2,156,534	+	6	115	77.02	-2.20	0.55	0.912933
12784	dm3.chrX	2,156,437 – 2,156,567	- - - - - - - -	17573	2,156,464 – 2,156,567	+	5	114	80.06	-1.70	0.81	0.925849
12792	dm3.chrX	2,196,413 – 2,196,513	- - - - - - - -	17581	2,196,413 – 2,196,513	+	6	109	85.44	-2.85	0.62	0.961551
12792	dm3.chrX	2,196,413 – 2,196,513	- - - - - - - -	17582	2,196,413 – 2,196,513	-	6	109	85.44	-2.58	0.66	0.942127
12794	dm3.chrX	2,197,161 – 2,197,262	- - - - - - - -	17584	2,197,161 – 2,197,262	-	5	115	79.27	-2.94	0.60	0.989589
12795	dm3.chrX	2,213,915 – 2,214,082	- - - - - - - -	17586	2,213,949 – 2,214,044	+	5	100	92.39	-2.55	0.93	0.987987
12796	dm3.chrX	2,226,724 – 2,226,846	- - - - - - - -	17589	2,226,742 – 2,226,846	-	3	106	93.67	-2.84	0.87	0.980872
12798	dm3.chrX	2,244,502 – 2,244,601	- - - - - - - -	17593	2,244,502 – 2,244,601	+	6	124	68.18	-1.98	0.47	0.957862
12800	dm3.chrX	2,260,802 – 2,260,986	- - - - - - - -	17595	2,260,802 – 2,260,913	+	3	114	97.08	-1.94	0.98	0.956823
12804	dm3.chrX	2,290,413 – 2,290,511	- - - - - - - -	17601	2,290,413 – 2,290,511	+	8	108	54.59	-0.86	0.43	0.938066
12813	dm3.chrX	2,366,382 – 2,366,433	- - - intron="intron;ID=intron_FBgn0261451:2_FBgn0261451:1;Name=trol-in;Parent=FBtr0091965,FBtr0305158,FBtr0305160,FBtr0305161,FBtr0305162,FBtr0305163,FBtr0305164,FBtr0305165,FBtr0305166,FBtr0305167,FBtr0305168,FBtr0305169,FBtr0305170,FBtr0305171,FBtr0305172,FBtr0305173,FBtr0305174,FBtr0305175,FBtr0305176;parent_type=mRNA" - - - -	17611	2,366,382 – 2,366,433	+	5	63	68.01	-1.88	0.59	0.989780
12815	dm3.chrX	2,392,188 – 2,392,289	- - - intron="intron;ID=intron_FBgn0261451:38_FBgn0261451:37;Name=trol-in;Parent=FBtr0091965,FBtr0305158,FBtr0305159,FBtr0305160,FBtr0305161,FBtr0305162,FBtr0305164,FBtr0305167,FBtr0305170,FBtr0305172,FBtr0305174,FBtr0305176;parent_type=mRNA" - - - -	17614	2,392,188 – 2,392,289	-	4	109	67.72	-1.54	0.63	0.923636
12816	dm3.chrX	2,402,894 – 2,402,952	- - - - - - - -	17615	2,402,894 – 2,402,952	+	6	67	68.13	-2.54	0.51	0.997652
12817	dm3.chrX	2,417,195 – 2,417,315	- - - intron="intron;ID=intron_FBgn0261451:53_FBgn0261451:52;Name=trol-in;Parent=FBtr0305159;parent_type=mRNA" - - - -	17617	2,417,195 – 2,417,315	-	3	120	88.86	-1.99	0.88	0.918391
12819	dm3.chrX	2,428,769 – 2,428,877	- - - intron="intron;ID=intron_FBgn0261451:56_FBgn0261451:55;Name=trol-in;Parent=FBtr0305158,FBtr0305159,FBtr0305160,FBtr0305161,FBtr0305163,FBtr0305167,FBtr0305168,FBtr0305169,FBtr0305170,FBtr0305171,FBtr0305172,FBtr0305173,FBtr0305174,FBtr0305175;parent_type=mRNA" - - - -	17619	2,428,769 – 2,428,877	+	5	108	75.61	-1.45	0.80	0.932812
12820	dm3.chrX	2,430,850 – 2,430,983	- - - intron="intron;ID=intron_FBgn0261451:56_FBgn0261451:55;Name=trol-in;Parent=FBtr0305158,FBtr0305159,FBtr0305160,FBtr0305161,FBtr0305163,FBtr0305167,FBtr0305168,FBtr0305169,FBtr0305170,FBtr0305171,FBtr0305172,FBtr0305173,FBtr0305174,FBtr0305175;parent_type=mRNA" - - - -	17620	2,430,850 – 2,430,943	+	3	98	83.57	-3.21	0.77	0.994105
12820	dm3.chrX	2,430,850 – 2,430,983		17621	2,430,883 – 2,430,983	+	4	109	77.22	-2.53	0.59	0.962916
12822	dm3.chrX	2,441,957 – 2,442,104	- - - - - - - -	17623	2,441,957 – 2,442,064	+	4	120	64.61	-1.97	0.42	0.923754
				17624	2,441,957 – 2,442,064	-	4	120	64.61	-2.32	0.49	0.992765
				17625	2,441,984 – 2,442,104	-	4	120	77.78	-2.15	0.67	0.949033
12824	dm3.chrX	2,470,598 – 2,470,760	- - - - - - - -	17628	2,470,634 – 2,470,737	+	4	120	85.35	-2.24	0.84	0.963196
12826	dm3.chrX	2,485,831 – 2,485,941	- - - intron="intron;ID=intron_CG9659:1_CG9659:2;Name=egh-in;Parent=FBtr0070439;parent_type=mRNA" - - - -	17631	2,485,831 – 2,485,941	-	5	113	62.25	-1.92	0.40	0.956989
12827	dm3.chrX	2,487,300 – 2,487,433	- - - intron="intron;ID=intron_CG9659:4_CG9659:2;Name=egh-in;Parent=FBtr0070440;parent_type=mRNA" - - - -	17632	2,487,300 – 2,487,393	-	5	102	77.78	-3.10	0.69	0.997559
12827	dm3.chrX	2,487,300 – 2,487,433		17634	2,487,332 – 2,487,433	-	4	101	87.54	-3.15	0.74	0.988928
12828	dm3.chrX	2,489,033 – 2,489,169	- - - intron="intron;ID=intron_CG9659:4_CG9659:2;Name=egh-in;Parent=FBtr0070440;parent_type=mRNA" - - - -	17635	2,489,033 – 2,489,139	+	5	111	72.43	-2.08	0.54	0.974795
12831	dm3.chrX	2,527,943 – 2,528,030	- - - - - - - -	17640	2,527,943 – 2,528,030	-	6	98	72.21	-2.03	0.48	0.923076
12832	dm3.chrX	2,529,991 – 2,530,088	- - - intron="intron;ID=intron_FBgn0003371:5_FBgn0003371:8;Name=sgg-in;Parent=FBtr0070474;parent_type=mRNA" - - - -	17641	2,529,991 – 2,530,088	-	5	114	72.54	-3.31	0.29	0.939908
12839	dm3.chrX	2,557,500 – 2,557,608	- - - intron="intron;ID=intron_FBgn0003371:18_FBgn0003371:23;Name=sgg-in;Parent=FBtr0070471;parent_type=mRNA" - - - -	17649	2,557,500 – 2,557,608	+	5	117	83.79	-2.58	0.74	0.975900
12840	dm3.chrX	2,580,801 – 2,580,895	- - - intron="intron;ID=intron_CG2647:1_CG2647:2;Name=per-in;Parent=FBtr0070477;parent_type=mRNA" - - - -	17651	2,580,801 – 2,580,895	-	3	94	96.45	-2.28	0.95	0.970000
12841	dm3.chrX	2,581,434 – 2,581,530	- - - intron="intron;ID=intron_CG2647:1_CG2647:2;Name=per-in;Parent=FBtr0070477;parent_type=mRNA" - - - -	17653	2,581,434 – 2,581,530	-	6	117	65.71	-1.83	0.64	0.996279
12842	dm3.chrX	2,586,810 – 2,586,913	- - - - - - - -	17655	2,586,820 – 2,586,913	+	3	95	70.92	-2.00	0.59	0.904961
12847	dm3.chrX	2,597,910 – 2,598,087	- - - - - - - -	17663	2,597,967 – 2,598,087	+	5	120	84.33	-2.27	0.70	0.917607
12855	dm3.chrX	2,665,543 – 2,665,642	- - - - - - - -	17675	2,665,543 – 2,665,642	-	11	119	76.79	-3.25	0.84	0.999208
12859	dm3.chrX	2,702,228 – 2,702,345	- - - - - - - -	17679	2,702,228 – 2,702,345	+	4	118	70.23	-1.86	0.51	0.916207
12860	dm3.chrX	2,725,872 – 2,725,937	- - - - - - - -	17681	2,725,872 – 2,725,937	+	3	65	56.92	-1.17	0.79	0.988137
12860	dm3.chrX	2,725,872 – 2,725,937	- - - - - - - -	17682	2,725,872 – 2,725,937	-	3	65	56.92	-1.19	0.53	0.920880
12863	dm3.chrX	2,749,164 – 2,749,298	- - - - - - - -	17686	2,749,203 – 2,749,298	+	4	105	86.83	-3.07	0.75	0.987598
12866	dm3.chrX	2,812,642 – 2,812,742	- - - - - - - -	17689	2,812,642 – 2,812,742	-	5	101	89.58	-2.78	0.76	0.965245
12867	dm3.chrX	2,813,747 – 2,813,846	- - - - - - - -	17690	2,813,747 – 2,813,846	+	9	102	73.47	-1.15	0.65	0.932184
12870	dm3.chrX	2,853,177 – 2,853,241	- - - intron="intron;ID=intron_CG4125:2_CG4125:3;Name=rst-in;Parent=FBtr0070562;parent_type=mRNA" - - - -	17693	2,853,177 – 2,853,241	-	8	77	75.04	-2.39	0.45	0.926435
12871	dm3.chrX	2,858,464 – 2,858,556	- - - intron="intron;ID=intron_CG4125:2_CG4125:3;Name=rst-in;Parent=FBtr0070562;parent_type=mRNA" - - - -	17694	2,858,464 – 2,858,556	+	3	95	54.12	-1.06	0.67	0.974541
12871	dm3.chrX	2,858,464 – 2,858,556		17695	2,858,464 – 2,858,556	-	3	95	54.12	-0.98	0.59	0.929780
12872	dm3.chrX	2,868,407 – 2,868,645	- - - intron="intron;ID=intron_FBgn0028369:1_FBgn0028369:2;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17697	2,868,485 – 2,868,605	+	5	120	94.25	-2.29	0.88	0.941192
12872	dm3.chrX	2,868,407 – 2,868,645		17699	2,868,525 – 2,868,645	+	5	120	92.58	-3.13	0.77	0.980831
12873	dm3.chrX	2,870,516 – 2,870,622	- - - intron="intron;ID=intron_FBgn0028369:1_FBgn0028369:2;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17700	2,870,516 – 2,870,622	+	6	107	81.32	-1.73	0.77	0.906894
12875	dm3.chrX	2,887,779 – 2,887,879	- - - intron="intron;ID=intron_FBgn0028369:1_FBgn0028369:2;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17703	2,887,779 – 2,887,879	-	11	115	80.50	-2.17	0.60	0.948224
12877	dm3.chrX	2,932,266 – 2,932,400	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17706	2,932,266 – 2,932,400	-	6	135	85.21	-2.61	0.74	0.982788
12879	dm3.chrX	2,933,805 – 2,933,877	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17710	2,933,805 – 2,933,877	-	11	72	94.49	-1.89	0.99	0.976742
12881	dm3.chrX	2,945,217 – 2,945,267	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17712	2,945,217 – 2,945,267	+	7	50	100.00	-1.65	1.00	0.922283
12882	dm3.chrX	2,945,304 – 2,945,400	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17713	2,945,304 – 2,945,400	+	5	114	70.02	-1.00	0.84	0.925618
12883	dm3.chrX	2,947,240 – 2,947,340	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17714	2,947,240 – 2,947,340	-	9	113	89.02	-2.62	0.92	0.993653
12884	dm3.chrX	2,949,443 – 2,949,499	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17715	2,949,443 – 2,949,499	+	4	56	94.44	-2.55	0.88	0.965719
12884	dm3.chrX	2,949,443 – 2,949,499		17716	2,949,443 – 2,949,499	-	4	56	94.44	-1.90	1.12	0.996908
12885	dm3.chrX	2,959,829 – 2,959,930	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17717	2,959,829 – 2,959,930	-	12	103	93.69	-2.48	0.90	0.981756
12886	dm3.chrX	2,986,094 – 2,986,163	- - - intron="intron;ID=intron_FBgn0028369:4_FBgn0028369:5;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17718	2,986,094 – 2,986,163	+	5	79	69.96	-2.18	0.48	0.938783
12887	dm3.chrX	2,997,227 – 2,997,341	- - - intron="intron;ID=intron_FBgn0028369:5_FBgn0028369:7;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17720	2,997,234 – 2,997,341	+	5	115	67.33	-1.22	0.60	0.933403
12888	dm3.chrX	3,008,875 – 3,008,938	- - - intron="intron;ID=intron_FBgn0028369:5_FBgn0028369:7;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17722	3,008,875 – 3,008,938	-	6	65	80.17	-1.85	0.68	0.927731
12893	dm3.chrX	3,047,653 – 3,047,745	- - - intron="intron;ID=intron_FBgn0004647:2_FBgn0004647:3;Name=N-in;Parent=FBtr0070507,FBtr0304659;parent_type=mRNA" - - - -	17728	3,047,653 – 3,047,745	+	8	95	65.06	-1.46	0.41	0.911605
12893	dm3.chrX	3,047,653 – 3,047,745		17729	3,047,653 – 3,047,745	-	8	95	65.06	-1.39	0.43	0.922691
12894	dm3.chrX	3,051,613 – 3,051,703	- - - intron="intron;ID=intron_FBgn0004647:4_FBgn0004647:5;Name=N-in;Parent=FBtr0070507,FBtr0304659;parent_type=mRNA" - - - -	17730	3,051,613 – 3,051,703	-	8	103	81.01	-2.66	0.58	0.973607
12895	dm3.chrX	3,054,706 – 3,054,808	- - - intron="intron;ID=intron_FBgn0004647:5_FBgn0004647:6;Name=N-in;Parent=FBtr0070507,FBtr0304659;parent_type=mRNA" - - - -	17731	3,054,706 – 3,054,808	+	5	102	78.91	-1.93	0.75	0.953423
12895	dm3.chrX	3,054,706 – 3,054,808		17732	3,054,706 – 3,054,808	-	5	102	78.91	-1.89	0.72	0.932565
12898	dm3.chrX	3,097,988 – 3,098,038	- - - intron="intron;ID=intron_FBgn0000479:1_FBgn0000479:2;Name=dnc-in;Parent=FBtr0070509;parent_type=mRNA" - - - -	17735	3,097,988 – 3,098,038	-	3	50	93.33	-1.81	0.96	0.938751
12900	dm3.chrX	3,105,999 – 3,106,089	- - - intron="intron;ID=intron_FBgn0000479:1_FBgn0000479:2;Name=dnc-in;Parent=FBtr0070509;parent_type=mRNA" - - - -	17738	3,105,999 – 3,106,089	-	7	98	64.48	-1.54	0.40	0.938658
12905	dm3.chrX	3,155,847 – 3,155,981	- - - intron="intron;ID=intron_FBgn0000479:7_FBgn0000479:8;Name=dnc-in;Parent=FBtr0070512,FBtr0070513;parent_type=mRNA" - - - -	17744	3,155,847 – 3,155,981	+	12	154	79.49	-2.16	0.51	0.901211
12908	dm3.chrX	3,165,085 – 3,165,188	- - - intron="intron;ID=intron_FBgn0000479:7_FBgn0000479:8;Name=dnc-in;Parent=FBtr0070512,FBtr0070513;parent_type=mRNA" - - - -	17747	3,165,085 – 3,165,187	+	5	102	95.63	-2.30	0.98	0.985983
				17749	3,165,086 – 3,165,188	+	5	102	95.63	-2.48	0.98	0.990543
				17750	3,165,086 – 3,165,188	-	5	102	95.63	-1.47	0.99	0.908428
12909	dm3.chrX	3,165,649 – 3,165,741	- - - intron="intron;ID=intron_FBgn0000479:7_FBgn0000479:8;Name=dnc-in;Parent=FBtr0070512,FBtr0070513;parent_type=mRNA" - - - -	17751	3,165,649 – 3,165,741	+	6	108	65.58	-1.43	0.53	0.970866
12914	dm3.chrX	3,206,998 – 3,207,060	- - - intron="intron;ID=intron_FBgn0000479:11_FBgn0000479:14;Name=dnc-in;Parent=FBtr0070518;parent_type=mRNA" - - - -	17757	3,206,998 – 3,207,060	+	7	67	64.79	-1.42	0.50	0.982184
12916	dm3.chrX	3,233,065 – 3,233,197	- - CDS="CDS;ID=CDS_FBgn0000479:27_975;Name=dnc-cds;Parent=FBtr0070519,FBtr0070520,FBtr0070521,FBtr0070509,FBtr0070511,FBtr0070512,FBtr0070513,FBtr0070515,FBtr0070516;parent_type=mRNA" - - - - -	17760	3,233,065 – 3,233,161	+	4	96	66.84	-1.50	0.61	0.969753
12916	dm3.chrX	3,233,065 – 3,233,197		17761	3,233,065 – 3,233,161	-	4	96	66.84	-2.24	0.62	0.997367
12926	dm3.chrX	3,321,474 – 3,321,566	FBnoncoding="tRNA;ID=FBtr0070533;Name=tRNA:CR32493-RA;Parent=FBgn0052493;Alias=CR32493-RA;Dbxref=FlyBase_Annotation_IDs:CR32493-RA;score_text=Weakly" tRNAscann="Gln_chrX_trna26" - intron="intron;ID=intron_FBgn0029657:4_FBgn0029657:3;Name=CG12535-in;Parent=FBtr0070534;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPN01190225.1/1900-1971\|2.3e-26" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|2.2e-20" "unique_Noncode_2.0=u183049_mRNAlike\|1.9e-20" -	17773	3,321,474 – 3,321,566	+	11	120	75.75	-2.02	0.95	0.993539
12926	dm3.chrX	3,321,474 – 3,321,566		17774	3,321,474 – 3,321,566	-	11	120	75.75	-1.42	0.95	0.977046
12928	dm3.chrX	3,343,454 – 3,343,546	- - - - - - - -	17776	3,343,454 – 3,343,546	+	4	115	65.55	-2.22	0.61	0.997282
12928	dm3.chrX	3,343,454 – 3,343,546	- - - - - - - -	17777	3,343,454 – 3,343,546	-	4	115	65.55	-2.18	0.38	0.916241
12935	dm3.chrX	3,402,967 – 3,403,029	- - - - - - - -	17785	3,402,967 – 3,403,029	+	6	62	92.80	-2.42	0.83	0.940184
12936	dm3.chrX	3,411,364 – 3,411,479	- - - intron="intron;ID=intron_CG32791:6_CG32791:7;Name=CG32791-in;Parent=FBtr0070588;parent_type=mRNA" - - - -	17787	3,411,380 – 3,411,479	+	5	100	93.40	-2.26	0.92	0.968449
12936	dm3.chrX	3,411,364 – 3,411,479		17788	3,411,380 – 3,411,479	-	5	100	93.40	-2.22	0.95	0.978287
12939	dm3.chrX	3,445,075 – 3,445,166	- - - - - - - -	17791	3,445,075 – 3,445,166	-	7	103	83.51	-2.66	0.62	0.967089
12940	dm3.chrX	3,462,106 – 3,462,203	- - - intron="intron;ID=intron_FBgn0052792:2_FBgn0052792:5;Name=CG32792-in;Parent=FBtr0290005;parent_type=mRNA" - - - -	17792	3,462,106 – 3,462,198	+	5	96	72.78	-2.13	0.63	0.979649
12940	dm3.chrX	3,462,106 – 3,462,203		17793	3,462,111 – 3,462,203	+	5	96	72.14	-2.23	0.64	0.988125
12943	dm3.chrX	3,482,425 – 3,482,507	- - - intron="intron;ID=intron_FBgn0028961:1_FBgn0028961:2;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17796	3,482,425 – 3,482,507	-	5	82	92.93	-2.55	0.88	0.976339
12944	dm3.chrX	3,484,418 – 3,484,522	- - - intron="intron;ID=intron_FBgn0028961:1_FBgn0028961:2;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17798	3,484,418 – 3,484,522	-	5	120	78.06	-2.93	0.53	0.989888
12947	dm3.chrX	3,531,496 – 3,531,612	- - - intron="intron;ID=intron_FBgn0028961:2_FBgn0028961:3;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17801	3,531,496 – 3,531,612	-	7	120	74.78	-1.72	0.76	0.982011
12948	dm3.chrX	3,533,859 – 3,533,963	- - - intron="intron;ID=intron_FBgn0028961:2_FBgn0028961:3;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17802	3,533,859 – 3,533,963	-	4	111	90.29	-2.76	0.84	0.981692
12949	dm3.chrX	3,538,122 – 3,538,214	- - - intron="intron;ID=intron_FBgn0028961:2_FBgn0028961:3;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17803	3,538,122 – 3,538,214	-	9	102	67.97	-1.85	0.45	0.979310
12950	dm3.chrX	3,544,522 – 3,544,573	- - - intron="intron;ID=intron_FBgn0028961:3_FBgn0028961:4;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17804	3,544,522 – 3,544,573	+	3	51	90.85	-2.22	1.00	0.990694
12957	dm3.chrX	3,600,482 – 3,600,551	- - - intron="intron;ID=intron_FBgn0015286:2_FBgn0015286:1;Name=Rala-in;Parent=FBtr0070583,FBtr0070584;parent_type=mRNA" - - - -	17811	3,600,482 – 3,600,551	-	5	69	90.14	-1.59	0.93	0.906537
12960	dm3.chrX	3,613,778 – 3,613,938	- - - - - - - -	17814	3,613,778 – 3,613,898	+	4	120	84.86	-2.58	0.79	0.981818
12962	dm3.chrX	3,614,146 – 3,614,220	- - - intron="intron;ID=intron_FBgn0086899:1_FBgn0086899:4;Name=tlk-in;Parent=FBtr0299580;parent_type=mRNA" - - - -	17818	3,614,146 – 3,614,220	-	7	82	65.86	-1.21	0.49	0.924330
12963	dm3.chrX	3,625,784 – 3,625,901	- - - intron="intron;ID=intron_FBgn0086899:5_FBgn0086899:13;Name=tlk-in;Parent=FBtr0299579;parent_type=mRNA" - - - -	17819	3,625,784 – 3,625,888	-	3	104	89.42	-1.52	0.97	0.927182
12965	dm3.chrX	3,633,778 – 3,633,875	- - - intron="intron;ID=intron_FBgn0086899:5_FBgn0086899:13;Name=tlk-in;Parent=FBtr0299579;parent_type=mRNA" - - - -	17823	3,633,784 – 3,633,875	-	4	100	85.69	-2.24	0.78	0.940376
12967	dm3.chrX	3,658,233 – 3,658,307	- - - intron="intron;ID=intron_FBgn0086899:8_FBgn0086899:13;Name=tlk-in;Parent=FBtr0112680;parent_type=mRNA" - - - -	17825	3,658,233 – 3,658,307	+	4	74	78.85	-2.98	0.65	0.993502
12967	dm3.chrX	3,658,233 – 3,658,307		17826	3,658,233 – 3,658,307	-	4	74	78.85	-2.13	0.75	0.967460
12968	dm3.chrX	3,665,051 – 3,665,125	- - - intron="intron;ID=intron_FBgn0086899:8_FBgn0086899:13;Name=tlk-in;Parent=FBtr0112680;parent_type=mRNA" - - - -	17827	3,665,051 – 3,665,125	+	6	74	79.54	-1.41	0.83	0.911905
12973	dm3.chrX	3,700,373 – 3,700,538	- - - intron="intron;ID=intron_FBgn0061173:2_FBgn0061173:3;Name=fd3F-in;Parent=FBtr0070602;parent_type=mRNA" - - - -	17833	3,700,373 – 3,700,538	+	7	172	69.53	-2.75	0.41	0.993120
12974	dm3.chrX	3,706,861 – 3,706,977	- - - intron="intron;ID=intron_FBgn0000542:1_FBgn0000542:2;Name=ec-in;Parent=FBtr0112801;parent_type=mRNA" - - - -	17834	3,706,861 – 3,706,977	+	7	120	65.45	-1.09	0.53	0.910991
12976	dm3.chrX	3,713,725 – 3,713,812	FBnoncoding="tRNA;ID=FBtr0070603;Name=tRNA:CR32785-RA;Parent=FBgn0052785;Alias=CR32785-RA;Dbxref=FlyBase_Annotation_IDs:CR32785-RA;score_text=Weakly" tRNAscann="Gln_chrX_trna1" - intron="intron;ID=intron_FBgn0000542:1_FBgn0000542:2;Name=ec-in;Parent=FBtr0112801;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AANI01016231.1/175977-176048\|3.8e-34" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|1.3e-24" "unique_Noncode_2.0=u183049_mRNAlike\|1.2e-24" -	17836	3,713,725 – 3,713,812	+	12	99	80.53	-1.57	0.82	0.965025
12976	dm3.chrX	3,713,725 – 3,713,812		17837	3,713,725 – 3,713,812	-	12	99	80.53	-2.81	0.79	0.998214
12977	dm3.chrX	3,716,604 – 3,716,748	- - - intron="intron;ID=intron_FBgn0000542:2_FBgn0000542:4;Name=ec-in;Parent=FBtr0112801;parent_type=mRNA" - - - -	17838	3,716,604 – 3,716,748	-	7	148	75.45	-2.00	0.52	0.938357
12978	dm3.chrX	3,721,653 – 3,721,727	FBnoncoding="tRNA;ID=FBtr0070604;Name=tRNA:P:3E-RA;Parent=FBgn0025118;Dbxref=FlyBase_Annotation_IDs:CR32784-RA;score_text=Weakly" tRNAscann="Pro_chrX_trna2" - intron="intron;ID=intron_FBgn0000542:2_FBgn0000542:4;Name=ec-in;Parent=FBtr0112801;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|1.8e-29" - - -	17839	3,721,653 – 3,721,727	+	12	74	93.37	-1.48	0.99	0.940363
12978	dm3.chrX	3,721,653 – 3,721,727		17840	3,721,653 – 3,721,727	-	12	74	93.37	-2.72	0.93	0.992808
12979	dm3.chrX	3,727,778 – 3,727,876	- - - - - - - -	17841	3,727,778 – 3,727,876	-	7	118	56.89	-1.45	0.37	0.930079
12986	dm3.chrX	3,750,990 – 3,751,106	- - - - - - - -	17848	3,750,990 – 3,751,106	+	5	117	81.62	-2.95	0.68	0.993637
12987	dm3.chrX	3,768,747 – 3,768,886	- - - intron="intron;ID=intron_CG2930:2_CG2930:3;Name=CG2930-in;Parent=FBtr0070608,FBtr0070609,FBtr0070610;parent_type=mRNA" - - - -	17852	3,768,787 – 3,768,886	+	5	106	83.50	-2.53	0.65	0.933681
12988	dm3.chrX	3,769,177 – 3,769,277	- - - intron="intron;ID=intron_CG2930:2_CG2930:3;Name=CG2930-in;Parent=FBtr0070608,FBtr0070609,FBtr0070610;parent_type=mRNA" - - - -	17854	3,769,177 – 3,769,277	+	5	106	93.26	-3.12	0.84	0.989055
12992	dm3.chrX	3,779,395 – 3,779,495	- - - intron="intron;ID=intron_CG15239:1_CG15239:2;Name=CG15239-in;Parent=FBtr0070612;parent_type=mRNA" - - - -	17859	3,779,395 – 3,779,495	-	6	108	80.51	-2.12	0.71	0.957060
12996	dm3.chrX	3,786,133 – 3,786,276	- - - - - - - -	17866	3,786,186 – 3,786,276	+	5	90	98.67	-1.81	0.97	0.920120
12998	dm3.chrX	3,794,009 – 3,794,108	- - - intron="intron;ID=intron_FBgn0260658:4_FBgn0260658:3;Name=CG42541-in;Parent=FBtr0301099,FBtr0301100;parent_type=mRNA" - - - -	17868	3,794,009 – 3,794,108	-	3	120	73.75	-1.88	0.75	0.935808
13004	dm3.chrX	3,815,606 – 3,815,701	- - - - - - - -	17875	3,815,606 – 3,815,701	+	4	95	66.19	-1.88	0.62	0.992302
13009	dm3.chrX	3,825,626 – 3,825,721	- - - - - - - -	17880	3,825,626 – 3,825,721	+	4	95	89.74	-2.19	0.86	0.939547
13010	dm3.chrX	3,830,413 – 3,830,482	- - - - - - - -	17881	3,830,413 – 3,830,482	+	6	70	65.38	-1.07	0.53	0.941686
13011	dm3.chrX	3,834,915 – 3,835,023	- - - - - - - -	17882	3,834,915 – 3,835,023	+	6	115	58.96	-1.80	0.36	0.973486
13014	dm3.chrX	3,845,686 – 3,845,786	- - CDS="CDS;ID=CDS_CG5014:4_927;Name=Vap-33-1-cds;Parent=FBtr0070618;parent_type=mRNA" - - - - -	17886	3,845,686 – 3,845,786	-	13	113	77.03	-1.58	0.61	0.949858
13018	dm3.chrX	3,878,810 – 3,878,917	- - - - - - - -	17890	3,878,810 – 3,878,917	+	3	107	66.04	-2.66	0.47	0.987639
13018	dm3.chrX	3,878,810 – 3,878,917	- - - - - - - -	17891	3,878,810 – 3,878,917	-	3	107	66.04	-2.13	0.53	0.969110
13020	dm3.chrX	3,888,182 – 3,888,238	- - - - - - - -	17893	3,888,182 – 3,888,238	+	6	58	62.68	-0.77	0.58	0.947681
13020	dm3.chrX	3,888,182 – 3,888,238	- - - - - - - -	17894	3,888,182 – 3,888,238	-	6	58	62.68	-0.99	0.69	0.990622
13024	dm3.chrX	3,909,302 – 3,909,367	- - - - - - - -	17898	3,909,302 – 3,909,367	+	9	77	84.58	-1.92	0.86	0.964710
13024	dm3.chrX	3,909,302 – 3,909,367	- - - - - - - -	17899	3,909,302 – 3,909,367	-	9	77	84.58	-3.79	0.85	0.999072
13025	dm3.chrX	3,909,527 – 3,909,613	- - - - - - - -	17900	3,909,527 – 3,909,613	+	5	87	76.38	-2.71	0.69	0.997050
13025	dm3.chrX	3,909,527 – 3,909,613	- - - - - - - -	17901	3,909,527 – 3,909,613	-	5	87	76.38	-2.40	0.63	0.989002
13027	dm3.chrX	3,931,056 – 3,931,170	- - - - - - - -	17904	3,931,056 – 3,931,170	-	12	120	82.02	-2.27	0.67	0.963179
13031	dm3.chrX	3,945,002 – 3,945,135	- - - - - - - -	17908	3,945,002 – 3,945,135	+	6	148	74.46	-2.35	0.61	0.991313
13033	dm3.chrX	3,953,811 – 3,953,901	- - - - - - - -	17911	3,953,811 – 3,953,901	+	11	101	75.09	-2.23	0.43	0.933421
13035	dm3.chrX	3,969,239 – 3,969,388	- - - - - - - -	17913	3,969,239 – 3,969,349	-	6	117	66.38	-1.51	0.58	0.983096
13037	dm3.chrX	4,002,221 – 4,002,307	- - - intron="intron;ID=intron_CG4944:6_CG4944:2;Name=cib-in;Parent=FBtr0070641;parent_type=mRNA" - - - -	17919	4,002,221 – 4,002,307	-	4	88	81.99	-2.10	0.74	0.925946
13040	dm3.chrX	4,023,163 – 4,023,215	- - - - - - - -	17922	4,023,163 – 4,023,215	+	5	52	92.31	-1.71	0.93	0.906742
13044	dm3.chrX	4,049,602 – 4,049,748	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17928	4,049,639 – 4,049,748	+	5	114	92.58	-2.45	0.84	0.944342
13049	dm3.chrX	4,069,357 – 4,069,433	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17933	4,069,357 – 4,069,433	-	7	97	70.90	-1.82	0.56	0.965383
13054	dm3.chrX	4,094,236 – 4,094,454	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17940	4,094,386 – 4,094,454	+	6	68	82.94	-2.19	0.75	0.971249
13057	dm3.chrX	4,100,155 – 4,100,247	- - - - - - - -	17944	4,100,155 – 4,100,247	-	7	109	65.70	-1.86	0.46	0.980770
13058	dm3.chrX	4,100,483 – 4,100,587	- - - - - - - -	17945	4,100,483 – 4,100,587	-	6	108	82.24	-2.31	0.61	0.919656
13059	dm3.chrX	4,120,002 – 4,120,064	- - - - - - - -	17946	4,120,002 – 4,120,064	+	6	62	72.85	-1.20	0.66	0.908005
13060	dm3.chrX	4,131,001 – 4,131,073	- - - - - - - -	17947	4,131,001 – 4,131,073	-	5	73	77.78	-2.47	0.57	0.954487
13061	dm3.chrX	4,136,802 – 4,136,893	- - - - - - - -	17948	4,136,802 – 4,136,893	-	7	92	73.97	-1.83	0.65	0.974144
13065	dm3.chrX	4,152,332 – 4,152,402	- - - - - - - -	17952	4,152,332 – 4,152,402	-	12	75	80.98	-2.29	0.66	0.985444
13066	dm3.chrX	4,153,535 – 4,153,631	- - - - - - - -	17953	4,153,535 – 4,153,631	+	8	100	72.50	-2.01	0.49	0.974321
13066	dm3.chrX	4,153,535 – 4,153,631	- - - - - - - -	17954	4,153,535 – 4,153,631	-	8	100	72.50	-2.12	0.39	0.903184
13068	dm3.chrX	4,163,209 – 4,163,303	- - CDS="CDS;ID=CDS_FBgn0029702:1_925;Name=CG15572-cds;Parent=FBtr0070647;parent_type=mRNA" - - - - -	17957	4,163,212 – 4,163,303	+	6	91	81.61	-2.38	0.60	0.946601
13071	dm3.chrX	4,184,771 – 4,184,879	- - - - - - - -	17960	4,184,771 – 4,184,879	+	3	120	68.39	-1.59	0.77	0.962893
13071	dm3.chrX	4,184,771 – 4,184,879	- - - - - - - -	17961	4,184,771 – 4,184,879	-	3	120	68.39	-1.55	0.74	0.947540
13073	dm3.chrX	4,189,355 – 4,189,426	- - - - - - - -	17963	4,189,355 – 4,189,426	+	6	72	84.95	-2.46	0.65	0.934800
13074	dm3.chrX	4,189,985 – 4,190,104	- - - - - - - -	17966	4,189,996 – 4,190,104	-	5	119	93.03	-2.35	0.88	0.959271
13075	dm3.chrX	4,192,999 – 4,193,068	- - - - - - - -	17967	4,192,999 – 4,193,068	+	6	77	60.14	-1.52	0.42	0.980612
13075	dm3.chrX	4,192,999 – 4,193,068	- - - - - - - -	17968	4,192,999 – 4,193,068	-	6	77	60.14	-0.91	0.47	0.930224
13076	dm3.chrX	4,203,115 – 4,203,227	- - - - - - - -	17969	4,203,115 – 4,203,210	+	8	119	74.67	-2.38	0.58	0.986692
13076	dm3.chrX	4,203,115 – 4,203,227	- - - - - - - -	17970	4,203,129 – 4,203,227	+	8	118	71.61	-1.84	0.54	0.962198
13078	dm3.chrX	4,207,567 – 4,207,618	- - - - - - - -	17972	4,207,567 – 4,207,618	+	4	52	95.15	-1.64	0.99	0.939791
13080	dm3.chrX	4,218,547 – 4,218,676	- - - intron="intron;ID=intron_FBgn0004625:1_FBgn0004625:2;Name=norpA-in;Parent=FBtr0301475;parent_type=mRNA" - - - -	17975	4,218,579 – 4,218,676	+	6	102	77.43	-1.80	0.62	0.909999
13081	dm3.chrX	4,218,693 – 4,218,866	- - - intron="intron;ID=intron_FBgn0004625:1_FBgn0004625:2;Name=norpA-in;Parent=FBtr0301475;parent_type=mRNA" - - - -	17977	4,218,732 – 4,218,828	+	5	98	83.78	-2.40	0.70	0.949005
13083	dm3.chrX	4,232,685 – 4,232,836	- - - intron="intron;ID=intron_FBgn0004625:3_FBgn0004625:5;Name=norpA-in;Parent=FBtr0100671,FBtr0070650,FBtr0301475;parent_type=mRNA" - - - -	17982	4,232,685 – 4,232,799	-	6	114	70.69	-1.19	0.67	0.940355
13084	dm3.chrX	4,241,907 – 4,241,986	- - - intron="intron;ID=intron_FBgn0004625:3_FBgn0004625:5;Name=norpA-in;Parent=FBtr0100671,FBtr0070650,FBtr0301475;parent_type=mRNA" - - - -	17985	4,241,907 – 4,241,986	-	7	85	72.42	-2.79	0.49	0.997412
13088	dm3.chrX	4,262,289 – 4,262,456	FBnoncoding="pre_miRNA;ID=FBtr0304309;Name=mir-983-1-RM;Parent=FBgn0262235;Alias=CR42942-RM;Dbxref=FlyBase_Annotation_IDs:CR42942-RM,miRBase:MI0005840" - - intron="intron;ID=intron_CG3626:1_CG3626:2;Name=CG3626-in;Parent=FBtr0070652;parent_type=mRNA" "Rfam_10.0=RF00949;mir-983;AC023742.4/21942-22040\|6.3e-50" - - "mirBase_v16=dme-mir-983-2\|1.2e-51"	17991	4,262,289 – 4,262,456	-	5	172	63.34	-2.22	0.41	0.990117
13091	dm3.chrX	4,278,856 – 4,278,913	- - - - - - - -	17994	4,278,856 – 4,278,913	+	4	57	92.90	-2.22	0.87	0.924653
13093	dm3.chrX	4,288,736 – 4,288,824	- - - - - - - -	17997	4,288,736 – 4,288,824	-	12	104	73.75	-2.11	0.48	0.957944
13095	dm3.chrX	4,289,826 – 4,289,931	- - - - - - - -	17999	4,289,826 – 4,289,926	+	12	119	81.73	-3.20	0.44	0.975895
13095	dm3.chrX	4,289,826 – 4,289,931	- - - - - - - -	18001	4,289,827 – 4,289,931	+	12	119	81.40	-3.01	0.43	0.955078
13096	dm3.chrX	4,291,975 – 4,292,032	- - - - - - - -	18002	4,291,975 – 4,292,032	+	6	58	75.76	-2.09	0.57	0.973444
13097	dm3.chrX	4,298,430 – 4,298,495	- - - - - - - -	18003	4,298,430 – 4,298,495	+	7	73	89.49	-3.26	0.88	0.997000
13097	dm3.chrX	4,298,430 – 4,298,495	- - - - - - - -	18004	4,298,430 – 4,298,495	-	7	73	89.49	-1.76	0.93	0.944753
13099	dm3.chrX	4,303,999 – 4,304,099	- - - - - - - -	18006	4,303,999 – 4,304,099	+	3	100	94.54	-2.05	1.00	0.981979
13106	dm3.chrX	4,349,708 – 4,349,830	- - - intron="intron;ID=intron_FBgn0000179:6_FBgn0000179:7;Name=bi-in;Parent=FBtr0070672,FBtr0300608,FBtr0300609;parent_type=mRNA" - - - -	18014	4,349,708 – 4,349,830	+	10	148	77.67	-3.53	0.68	0.999491
13108	dm3.chrX	4,366,792 – 4,366,899	- - - intron="intron;ID=intron_FBgn0000179:6_FBgn0000179:7;Name=bi-in;Parent=FBtr0070672,FBtr0300608,FBtr0300609;parent_type=mRNA" - - - -	18018	4,366,792 – 4,366,899	-	7	111	66.36	-1.86	0.35	0.935354
13109	dm3.chrX	4,384,509 – 4,384,599	- - - - - - - -	18019	4,384,509 – 4,384,599	+	10	103	75.69	-1.55	0.68	0.948826
13110	dm3.chrX	4,387,664 – 4,387,764	- - - - - - - -	18020	4,387,664 – 4,387,764	-	5	100	67.02	-1.33	0.57	0.927753
13122	dm3.chrX	4,428,229 – 4,428,339	- - - - - - - -	18036	4,428,229 – 4,428,339	-	6	111	80.47	-2.55	0.49	0.928176
13128	dm3.chrX	4,466,716 – 4,466,809	- - - - - - - -	18043	4,466,716 – 4,466,809	+	8	94	88.42	-2.86	0.78	0.989370
13133	dm3.chrX	4,500,547 – 4,500,637	- - - - - - - -	18048	4,500,547 – 4,500,637	+	5	106	84.23	-2.30	0.69	0.914993
13135	dm3.chrX	4,522,801 – 4,522,886	- - CDS="CDS;ID=CDS_FBgn0025387:4_935;Name=CG12184-cds;Parent=FBtr0070696;parent_type=mRNA" - - - - -	18050	4,522,801 – 4,522,886	+	4	88	70.91	-1.64	0.66	0.951350
13135	dm3.chrX	4,522,801 – 4,522,886		18051	4,522,801 – 4,522,886	-	4	88	70.91	-2.09	0.54	0.957905
13137	dm3.chrX	4,578,369 – 4,578,422	- - - intron="intron;ID=intron_CG2984:1_CG2984:2;Name=Pp2C1-in;Parent=FBtr0070685;parent_type=mRNA" - - - -	18053	4,578,369 – 4,578,422	+	5	53	94.72	-3.83	0.94	0.998324
13137	dm3.chrX	4,578,369 – 4,578,422		18054	4,578,369 – 4,578,422	-	5	53	94.72	-4.02	0.99	0.998901
13139	dm3.chrX	4,593,851 – 4,593,917	- - - - - - - -	18056	4,593,851 – 4,593,917	-	4	69	90.58	-2.11	0.90	0.955008
13142	dm3.chrX	4,635,275 – 4,635,368	- - - - - - - -	18061	4,635,275 – 4,635,368	-	7	108	77.07	-2.24	0.59	0.956193
13143	dm3.chrX	4,638,621 – 4,638,770	- - - - - - - -	18063	4,638,655 – 4,638,770	+	11	125	81.34	-2.22	0.87	0.992837
13144	dm3.chrX	4,639,426 – 4,639,587	- - - - - - - -	18064	4,639,426 – 4,639,587	-	8	169	76.85	-1.72	0.66	0.964172
13145	dm3.chrX	4,643,470 – 4,643,574	- - - - - - - -	18065	4,643,470 – 4,643,574	+	5	115	70.97	-2.57	0.50	0.990874
13146	dm3.chrX	4,661,043 – 4,661,130	- - - - - - - -	18066	4,661,043 – 4,661,130	+	12	87	97.25	-2.47	0.96	0.984910
13146	dm3.chrX	4,661,043 – 4,661,130	- - - - - - - -	18067	4,661,043 – 4,661,130	-	12	87	97.25	-1.97	0.93	0.913668
13148	dm3.chrX	4,673,735 – 4,673,830	- - - - - - - -	18070	4,673,735 – 4,673,830	-	6	107	81.53	-2.25	0.72	0.970000
13150	dm3.chrX	4,679,787 – 4,679,951	- - - - - - - -	18073	4,679,787 – 4,679,886	-	5	110	92.97	-3.15	0.84	0.990284
13156	dm3.chrX	4,712,357 – 4,712,537	- - - - - - - -	18081	4,712,357 – 4,712,462	-	5	124	71.20	-2.28	0.77	0.997439
13158	dm3.chrX	4,719,065 – 4,719,169	- - - - - - - -	18085	4,719,065 – 4,719,169	+	7	106	66.85	-1.32	0.52	0.974707
13160	dm3.chrX	4,721,369 – 4,721,467	- - - - - - - -	18087	4,721,369 – 4,721,467	-	5	102	80.92	-1.98	0.92	0.986347
13161	dm3.chrX	4,732,696 – 4,732,753	- - - - - - - -	18088	4,732,696 – 4,732,753	+	4	57	95.61	-1.80	0.98	0.950104
13166	dm3.chrX	4,780,643 – 4,780,796	- - - - - - - -	18094	4,780,643 – 4,780,697	-	6	61	76.09	-2.41	0.78	0.995915
13169	dm3.chrX	4,799,841 – 4,799,934	- - - - - - - -	18099	4,799,841 – 4,799,934	+	6	95	76.63	-1.79	0.65	0.955640
13173	dm3.chrX	4,816,467 – 4,816,572	- - - - - - - -	18103	4,816,467 – 4,816,572	+	3	106	77.67	-3.86	0.70	0.999108
13173	dm3.chrX	4,816,467 – 4,816,572	- - - - - - - -	18104	4,816,467 – 4,816,572	-	3	106	77.67	-3.81	0.76	0.999158
13174	dm3.chrX	4,816,729 – 4,816,862	- - - - - - - -	18105	4,816,729 – 4,816,848	+	3	120	88.33	-4.34	0.89	0.998995
				18106	4,816,729 – 4,816,848	-	3	120	88.33	-4.63	0.91	0.999113
				18107	4,816,743 – 4,816,862	+	3	120	88.33	-6.08	0.92	0.998164
				18108	4,816,743 – 4,816,862	-	3	120	88.33	-6.73	0.92	0.995946
13175	dm3.chrX	4,817,290 – 4,817,449	- - - - - - - -	18109	4,817,290 – 4,817,449	+	3	160	87.50	-3.74	0.90	0.998458
13175	dm3.chrX	4,817,290 – 4,817,449	- - - - - - - -	18110	4,817,290 – 4,817,449	-	3	160	87.50	-3.88	0.87	0.998498
13176	dm3.chrX	4,817,572 – 4,817,730	- - - - - - - -	18111	4,817,572 – 4,817,730	+	3	159	67.92	-3.63	0.83	0.999482
13176	dm3.chrX	4,817,572 – 4,817,730	- - - - - - - -	18112	4,817,572 – 4,817,730	-	3	159	67.92	-4.29	0.75	0.999779
13177	dm3.chrX	4,817,857 – 4,818,021	- - - - - - - -	18113	4,817,857 – 4,818,021	+	3	165	64.85	-3.69	0.83	0.999594
13177	dm3.chrX	4,817,857 – 4,818,021	- - - - - - - -	18114	4,817,857 – 4,818,021	-	3	165	64.85	-4.26	0.72	0.999856
13178	dm3.chrX	4,818,155 – 4,818,277	- - - - - - - -	18115	4,818,155 – 4,818,277	+	3	123	72.01	-2.14	0.74	0.983809
13178	dm3.chrX	4,818,155 – 4,818,277	- - - - - - - -	18116	4,818,155 – 4,818,277	-	3	123	72.01	-2.62	0.71	0.994825
13179	dm3.chrX	4,818,415 – 4,818,534	- - - - - - - -	18117	4,818,415 – 4,818,534	+	3	120	88.33	-6.08	0.92	0.998164
13179	dm3.chrX	4,818,415 – 4,818,534	- - - - - - - -	18118	4,818,415 – 4,818,534	-	3	120	88.33	-6.73	0.92	0.995946
13180	dm3.chrX	4,818,675 – 4,818,834	- - - - - - - -	18119	4,818,675 – 4,818,794	+	3	120	73.33	-2.37	0.77	0.991174
				18120	4,818,675 – 4,818,794	-	3	120	73.33	-2.41	0.74	0.990394
				18121	4,818,714 – 4,818,834	+	3	120	72.78	-3.78	0.87	0.999283
				18122	4,818,714 – 4,818,834	-	3	120	72.78	-4.16	0.83	0.999518
13181	dm3.chrX	4,818,957 – 4,819,108	- - - - - - - -	18123	4,818,957 – 4,819,068	+	3	120	70.17	-2.35	0.66	0.987379
				18124	4,818,957 – 4,819,068	-	3	120	70.17	-1.81	0.69	0.946241
				18125	4,818,989 – 4,819,108	+	3	120	72.22	-4.15	0.88	0.999369
				18126	4,818,989 – 4,819,108	-	3	120	72.22	-5.06	0.82	0.999570
13182	dm3.chrX	4,819,249 – 4,819,378	- - - - - - - -	18127	4,819,249 – 4,819,378	+	3	130	88.72	-4.28	0.88	0.998908
13182	dm3.chrX	4,819,249 – 4,819,378	- - - - - - - -	18128	4,819,249 – 4,819,378	-	3	130	88.72	-4.78	0.90	0.999121
13183	dm3.chrX	4,819,539 – 4,819,628	- - - - - - - -	18129	4,819,539 – 4,819,628	+	3	91	87.50	-2.28	0.81	0.920600
13184	dm3.chrX	4,819,781 – 4,819,939	- - - - - - - -	18132	4,819,821 – 4,819,939	+	3	120	88.30	-3.16	0.83	0.992794
13184	dm3.chrX	4,819,781 – 4,819,939	- - - - - - - -	18133	4,819,821 – 4,819,939	-	3	120	88.30	-3.72	0.83	0.997506
13185	dm3.chrX	4,820,048 – 4,820,207	- - - - - - - -	18134	4,820,048 – 4,820,167	+	3	120	88.27	-2.27	0.85	0.944430
				18135	4,820,048 – 4,820,167	-	3	120	88.27	-2.26	0.88	0.962579
				18136	4,820,088 – 4,820,207	+	3	120	87.22	-3.91	0.81	0.998148
				18137	4,820,088 – 4,820,207	-	3	120	87.22	-3.76	0.89	0.998452
13186	dm3.chrX	4,820,350 – 4,820,469	- - - - - - - -	18138	4,820,350 – 4,820,469	+	3	120	89.44	-4.62	0.89	0.999059
13186	dm3.chrX	4,820,350 – 4,820,469	- - - - - - - -	18139	4,820,350 – 4,820,469	-	3	120	89.44	-5.55	0.89	0.998961
13187	dm3.chrX	4,826,158 – 4,826,220	- - - intron="intron;ID=intron_FBgn0029738:7_FBgn0029738:6;Name=CG4068-in;Parent=FBtr0112950;parent_type=mRNA" - - - -	18140	4,826,158 – 4,826,220	+	3	65	88.54	-3.72	0.84	0.997560
13188	dm3.chrX	4,826,754 – 4,826,823	- - - - - - - -	18141	4,826,754 – 4,826,823	+	4	72	66.67	-2.96	0.60	0.999488
13188	dm3.chrX	4,826,754 – 4,826,823	- - - - - - - -	18142	4,826,754 – 4,826,823	-	4	72	66.67	-2.30	0.46	0.983626
13189	dm3.chrX	4,827,796 – 4,827,863	- - - - - - - -	18143	4,827,796 – 4,827,863	+	3	70	87.44	-3.11	0.84	0.993313
13193	dm3.chrX	4,839,709 – 4,839,870	- - - intron="intron;ID=intron_FBgn0004368:6_FBgn0004368:7;Name=Ptp4E-in;Parent=FBtr0070724,FBtr0070725,FBtr0301793,FBtr0301794,FBtr0301796;parent_type=mRNA" - - - -	18147	4,839,709 – 4,839,870	+	4	163	82.93	-2.41	0.68	0.937131
13193	dm3.chrX	4,839,709 – 4,839,870		18148	4,839,709 – 4,839,870	-	4	163	82.93	-2.68	0.71	0.979550
13194	dm3.chrX	4,860,567 – 4,860,690	- - - - - - - -	18149	4,860,567 – 4,860,662	+	5	98	86.33	-2.71	0.90	0.994202
13197	dm3.chrX	4,873,382 – 4,873,487	- - - - - - - -	18155	4,873,382 – 4,873,487	-	3	105	84.90	-1.96	0.90	0.953166
13198	dm3.chrX	4,881,084 – 4,881,176	- - - - - - - -	18156	4,881,084 – 4,881,176	-	8	97	67.66	-1.30	0.54	0.963810
13202	dm3.chrX	4,921,298 – 4,921,351	- - - - - - - -	18161	4,921,298 – 4,921,351	-	3	68	61.38	-1.36	0.72	0.957292
13206	dm3.chrX	4,987,212 – 4,987,271	- - - intron="intron;ID=intron_FBgn0086911:2_FBgn0086911:3;Name=rg-in;Parent=FBtr0110993,FBtr0290088,FBtr0299589;parent_type=mRNA" - - - -	18165	4,987,212 – 4,987,271	-	5	59	60.99	-0.76	0.71	0.987015
13208	dm3.chrX	5,003,897 – 5,004,046	- - - intron="intron;ID=intron_FBgn0086911:2_FBgn0086911:3;Name=rg-in;Parent=FBtr0110993,FBtr0290088,FBtr0299589;parent_type=mRNA" - - - -	18169	5,003,935 – 5,004,046	+	5	111	90.90	-3.18	0.69	0.970412
13208	dm3.chrX	5,003,897 – 5,004,046		18170	5,003,935 – 5,004,046	-	5	111	90.90	-2.67	0.74	0.928958
13210	dm3.chrX	5,024,486 – 5,024,593	- - - intron="intron;ID=intron_FBgn0086911:2_FBgn0086911:3;Name=rg-in;Parent=FBtr0110993,FBtr0290088,FBtr0299589;parent_type=mRNA" - - - -	18172	5,024,486 – 5,024,593	+	4	108	82.08	-1.68	0.84	0.903871
13210	dm3.chrX	5,024,486 – 5,024,593		18173	5,024,486 – 5,024,593	-	4	108	82.08	-1.83	0.83	0.930701
13214	dm3.chrX	5,065,977 – 5,066,069	- - - intron="intron;ID=intron_FBgn0029746:1_FBgn0029746:2;Name=CG15465-in;Parent=FBtr0070742;parent_type=mRNA" - - - -	18178	5,065,977 – 5,066,069	-	5	93	62.84	-0.78	0.62	0.930807
13224	dm3.chrX	5,126,494 – 5,126,564	- - - intron="intron;ID=intron_FBgn0086911:16_FBgn0086911:17;Name=rg-in;Parent=FBtr0290088;parent_type=mRNA" - - - -	18188	5,126,494 – 5,126,564	+	6	70	78.00	-1.94	0.57	0.911918
13224	dm3.chrX	5,126,494 – 5,126,564		18189	5,126,494 – 5,126,564	-	6	70	78.00	-2.07	0.56	0.935427
13227	dm3.chrX	5,171,442 – 5,171,508	- - - - - - - -	18193	5,171,442 – 5,171,508	+	4	66	95.45	-3.63	1.00	0.998594
13229	dm3.chrX	5,193,466 – 5,193,568	- - - intron="intron;ID=intron_FBgn0261803:3_FBgn0261803:4;Name=CG42749-in;Parent=FBtr0303278,FBtr0303279;parent_type=mRNA" - - - -	18196	5,193,466 – 5,193,568	-	4	104	68.25	-2.17	0.48	0.965816
13230	dm3.chrX	5,205,989 – 5,206,118	- - - - - - - -	18199	5,206,014 – 5,206,118	+	5	120	67.63	-1.66	0.55	0.953853
13233	dm3.chrX	5,231,915 – 5,232,053	- - - - - - - -	18203	5,231,915 – 5,232,013	+	4	119	71.24	-2.00	0.76	0.989608
13233	dm3.chrX	5,231,915 – 5,232,053	- - - - - - - -	18204	5,231,944 – 5,232,053	+	4	119	85.49	-2.99	0.81	0.993444
13234	dm3.chrX	5,242,627 – 5,242,730	- - - intron="intron;ID=intron_FBgn0029761:2_FBgn0029761:3;Name=SK-in;Parent=FBtr0301950,FBtr0301951,FBtr0301953;parent_type=mRNA" - - - -	18205	5,242,627 – 5,242,730	+	6	106	66.05	-1.63	0.43	0.945237
13236	dm3.chrX	5,252,918 – 5,253,033	- - - intron="intron;ID=intron_FBgn0029761:4_FBgn0029761:6;Name=SK-in;Parent=FBtr0301954;parent_type=mRNA" - - - -	18208	5,252,918 – 5,253,033	+	6	132	63.89	-1.93	0.42	0.977068
13236	dm3.chrX	5,252,918 – 5,253,033		18209	5,252,918 – 5,253,033	-	6	132	63.89	-3.27	0.53	0.999885
13238	dm3.chrX	5,263,239 – 5,263,318	- - - intron="intron;ID=intron_FBgn0029761:5_FBgn0029761:6;Name=SK-in;Parent=FBtr0300467,FBtr0301949,FBtr0301952;parent_type=mRNA" - - - -	18211	5,263,239 – 5,263,318	+	6	83	74.47	-2.59	0.68	0.998018
13239	dm3.chrX	5,269,360 – 5,269,452	- - - intron="intron;ID=intron_FBgn0029761:5_FBgn0029761:6;Name=SK-in;Parent=FBtr0300467,FBtr0301949,FBtr0301952;parent_type=mRNA" - - - -	18213	5,269,360 – 5,269,452	-	5	107	72.86	-1.75	0.77	0.980316
13241	dm3.chrX	5,279,230 – 5,279,323	- - - intron="intron;ID=intron_FBgn0029761:11_FBgn0029761:12;Name=SK-in;Parent=FBtr0301949,FBtr0301950,FBtr0301951,FBtr0301952,FBtr0301954;parent_type=mRNA" - - - -	18216	5,279,230 – 5,279,323	-	6	103	81.45	-2.65	0.71	0.989870
13242	dm3.chrX	5,279,861 – 5,280,011	- - - intron="intron;ID=intron_FBgn0029761:11_FBgn0029761:12;Name=SK-in;Parent=FBtr0301949,FBtr0301950,FBtr0301951,FBtr0301952,FBtr0301954;parent_type=mRNA" - - - -	18217	5,279,861 – 5,279,960	+	7	114	68.26	-2.37	0.60	0.998921
				18218	5,279,861 – 5,279,960	-	7	114	68.26	-1.94	0.47	0.980031
				18219	5,279,881 – 5,279,998	+	6	117	85.75	-2.43	0.83	0.985651
				18220	5,279,920 – 5,280,011	+	5	91	99.56	-3.42	1.00	0.997560
13243	dm3.chrX	5,280,522 – 5,280,625	- - - intron="intron;ID=intron_FBgn0029761:11_FBgn0029761:12;Name=SK-in;Parent=FBtr0301949,FBtr0301950,FBtr0301951,FBtr0301952,FBtr0301954;parent_type=mRNA" - - - -	18221	5,280,522 – 5,280,623	-	3	101	89.00	-2.13	0.87	0.935424
13244	dm3.chrX	5,280,675 – 5,280,770	- - - intron="intron;ID=intron_FBgn0029761:11_FBgn0029761:12;Name=SK-in;Parent=FBtr0301949,FBtr0301950,FBtr0301951,FBtr0301952,FBtr0301954;parent_type=mRNA" - - - -	18224	5,280,675 – 5,280,770	-	6	120	62.55	-2.83	0.31	0.988777
13246	dm3.chrX	5,293,641 – 5,293,758	- - CDS="CDS;ID=CDS_FBgn0029761:21_949;Name=SK-cds;Parent=FBtr0300467;parent_type=mRNA" - - - - -	18227	5,293,641 – 5,293,758	-	12	120	97.62	-1.86	0.98	0.951160
13251	dm3.chrX	5,309,116 – 5,309,176	- - - intron="intron;ID=intron_CG3249:4_CG3249:5;Name=yu-in;Parent=FBtr0070796,FBtr0070794,FBtr0070795;parent_type=mRNA" - - - -	18232	5,309,116 – 5,309,176	+	5	66	58.49	-2.66	0.27	0.983547
13251	dm3.chrX	5,309,116 – 5,309,176		18233	5,309,116 – 5,309,176	-	5	66	58.49	-3.78	0.35	0.999858
13253	dm3.chrX	5,327,300 – 5,327,375	- - - - - - - -	18235	5,327,300 – 5,327,375	-	7	81	61.65	-1.57	0.42	0.958769
13255	dm3.chrX	5,333,470 – 5,333,571	- - - - - - - -	18237	5,333,470 – 5,333,571	+	3	102	74.57	-2.91	0.59	0.987240
13256	dm3.chrX	5,339,291 – 5,339,428	- - - - - - - -	18238	5,339,291 – 5,339,385	+	5	95	72.44	-1.57	0.62	0.923077
13256	dm3.chrX	5,339,291 – 5,339,428	- - - - - - - -	18240	5,339,310 – 5,339,422	-	5	126	67.21	-1.72	0.58	0.955770
13264	dm3.chrX	5,413,644 – 5,413,702	- - - - - - - -	18252	5,413,644 – 5,413,702	-	3	58	91.91	-0.76	1.09	0.928975
13265	dm3.chrX	5,419,186 – 5,419,287	- - - - - - - -	18253	5,419,186 – 5,419,287	+	5	105	59.27	-1.60	0.64	0.998232
13265	dm3.chrX	5,419,186 – 5,419,287	- - - - - - - -	18254	5,419,186 – 5,419,287	-	5	105	59.27	-1.36	0.52	0.986718
13266	dm3.chrX	5,439,146 – 5,439,265	- - - intron="intron;ID=intron_CG33980:3_CG33980:4;Name=Vsx2-in;Parent=FBtr0100024;parent_type=mRNA" - - - -	18255	5,439,146 – 5,439,265	+	8	123	73.30	-2.03	0.44	0.904025
13272	dm3.chrX	5,496,562 – 5,496,670	- - - intron="intron;ID=intron_CG4136:1_CG4136:2;Name=Vsx1-in;Parent=FBtr0070781;parent_type=mRNA" - - - -	18263	5,496,562 – 5,496,670	+	5	114	92.11	-2.87	0.80	0.974628
13274	dm3.chrX	5,525,668 – 5,525,722	- - - intron="intron;ID=intron_FBgn0259994:5_FBgn0259994:4;Name=CG42492-in;Parent=FBtr0300465,FBtr0300466;parent_type=mRNA" - - - -	18265	5,525,668 – 5,525,722	+	7	57	61.67	-1.08	0.47	0.966360
13274	dm3.chrX	5,525,668 – 5,525,722		18266	5,525,668 – 5,525,722	-	7	57	61.67	-1.38	0.66	0.998596
13278	dm3.chrX	5,560,963 – 5,561,082	- - - intron="intron;ID=intron_CG4119:2_CG4119:3;Name=CG4119-in;Parent=FBtr0070799;parent_type=mRNA" - - - -	18270	5,560,963 – 5,561,082	+	4	124	66.18	-1.99	0.49	0.950372
13281	dm3.chrX	5,570,363 – 5,570,476	- - - intron="intron;ID=intron_CG3171:1_CG3171:2;Name=Tre1-in;Parent=FBtr0070848;parent_type=mRNA" - - - -	18273	5,570,363 – 5,570,476	-	5	116	80.66	-2.75	0.57	0.962480
13282	dm3.chrX	5,570,541 – 5,570,679	- - - intron="intron;ID=intron_CG3171:1_CG3171:2;Name=Tre1-in;Parent=FBtr0070848;parent_type=mRNA" - - - -	18275	5,570,581 – 5,570,679	-	5	101	76.76	-2.91	0.79	0.997714
13285	dm3.chrX	5,591,869 – 5,591,950	- - - - - - - -	18278	5,591,869 – 5,591,950	+	6	84	71.56	-1.77	0.49	0.915448
13286	dm3.chrX	5,592,102 – 5,592,271	- - - - - - - -	18279	5,592,102 – 5,592,271	-	5	170	71.00	-1.70	0.60	0.972453
13287	dm3.chrX	5,608,013 – 5,608,113	- - - - - - - -	18280	5,608,013 – 5,608,113	+	6	112	54.87	-1.99	0.25	0.935276
13289	dm3.chrX	5,615,311 – 5,615,424	- - - - - - - -	18282	5,615,311 – 5,615,424	-	6	118	73.03	-1.47	0.73	0.974489
13291	dm3.chrX	5,639,549 – 5,639,720	- - - - - - - -	18285	5,639,549 – 5,639,656	-	5	107	96.17	-2.44	0.93	0.975512
13291	dm3.chrX	5,639,549 – 5,639,720	- - - - - - - -	18286	5,639,620 – 5,639,720	-	3	100	92.67	-2.92	0.86	0.984305
13292	dm3.chrX	5,644,804 – 5,644,856	- - - intron="intron;ID=intron_CG4078:4_CG4078:5;Name=CG4078-in;Parent=FBtr0070807;parent_type=mRNA" - - - -	18287	5,644,804 – 5,644,856	+	5	52	84.04	-3.12	0.90	0.997886
13292	dm3.chrX	5,644,804 – 5,644,856		18288	5,644,804 – 5,644,856	-	5	52	84.04	-2.59	0.90	0.994567
13293	dm3.chrX	5,649,065 – 5,649,171	- - - - - - - -	18289	5,649,065 – 5,649,171	+	4	106	95.75	-2.34	0.89	0.939043
13295	dm3.chrX	5,660,932 – 5,661,057	- - - intron="intron;ID=intron_FBgn0029804:2_FBgn0029804:1;Name=CG3097-in;Parent=FBtr0070836;parent_type=mRNA" - - - -	18292	5,660,932 – 5,661,034	-	5	118	68.99	-2.08	0.54	0.987342
13298	dm3.chrX	5,684,823 – 5,684,878	- - - - - - - -	18296	5,684,823 – 5,684,878	+	5	61	75.26	-1.91	0.77	0.981775
13302	dm3.chrX	5,711,146 – 5,711,212	- - - - - - - -	18302	5,711,146 – 5,711,212	-	3	74	70.83	-1.92	0.64	0.921422
13304	dm3.chrX	5,717,442 – 5,717,584	- - - intron="intron;ID=intron_CG15765:2_CG15765:3;Name=CG15765-in;Parent=FBtr0070817;parent_type=mRNA" - - - -	18304	5,717,442 – 5,717,547	+	6	113	70.80	-1.47	0.58	0.930706
13304	dm3.chrX	5,717,442 – 5,717,584		18305	5,717,442 – 5,717,547	-	6	113	70.80	-1.77	0.51	0.936604
13306	dm3.chrX	5,721,765 – 5,721,868	- - - intron="intron;ID=intron_CG15765:2_CG15765:3;Name=CG15765-in;Parent=FBtr0070817;parent_type=mRNA" - - - -	18309	5,721,765 – 5,721,868	-	4	108	76.76	-2.65	0.54	0.966818
13309	dm3.chrX	5,726,135 – 5,726,298	- - - intron="intron;ID=intron_CG15765:2_CG15765:3;Name=CG15765-in;Parent=FBtr0070817;parent_type=mRNA" - - - -	18312	5,726,135 – 5,726,243	+	5	119	75.00	-3.23	0.81	0.999191
				18313	5,726,135 – 5,726,243	-	5	119	75.00	-2.99	0.82	0.998826
				18315	5,726,167 – 5,726,283	-	5	119	78.55	-2.01	0.81	0.983237
				18317	5,726,182 – 5,726,298	-	5	120	72.11	-1.77	0.60	0.960867
13311	dm3.chrX	5,741,131 – 5,741,186	- - - - - - - -	18319	5,741,131 – 5,741,186	+	7	55	73.48	-3.45	0.73	0.999711
13314	dm3.chrX	5,751,085 – 5,751,207	- - - - - - - -	18323	5,751,085 – 5,751,176	-	5	101	81.20	-1.82	0.93	0.977267
13314	dm3.chrX	5,751,085 – 5,751,207	- - - - - - - -	18324	5,751,111 – 5,751,207	-	5	120	77.56	-1.93	0.67	0.904038
13315	dm3.chrX	5,756,154 – 5,756,350	- - - - - - - -	18328	5,756,232 – 5,756,331	+	3	118	71.71	-1.88	0.69	0.947493
13323	dm3.chrX	5,815,266 – 5,815,342	- - - intron="intron;ID=intron_CG3726:1_CG3726:2;Name=CG3726-in;Parent=FBtr0070858;parent_type=mRNA" - - - -	18339	5,815,266 – 5,815,342	-	5	81	64.18	-2.63	0.31	0.973421
13325	dm3.chrX	5,828,307 – 5,828,368	- - - intron="intron;ID=intron_CG3726:1_CG3726:2;Name=CG3726-in;Parent=FBtr0070858;parent_type=mRNA" - - - -	18341	5,828,307 – 5,828,368	+	5	61	93.11	-2.32	0.90	0.967113
13326	dm3.chrX	5,859,773 – 5,859,868	- - - - - - - -	18343	5,859,773 – 5,859,868	+	5	100	81.07	-2.76	0.66	0.986039
13327	dm3.chrX	5,859,910 – 5,860,012	- - - - - - - -	18345	5,859,910 – 5,860,012	+	9	106	60.56	-2.55	0.46	0.999829
13327	dm3.chrX	5,859,910 – 5,860,012	- - - - - - - -	18346	5,859,910 – 5,860,012	-	9	106	60.56	-2.57	0.35	0.999033
13328	dm3.chrX	5,868,250 – 5,868,303	- - - intron="intron;ID=intron_CG14447:1_CG14447:2;Name=Grip-in;Parent=FBtr0070865;parent_type=mRNA" - - - -	18347	5,868,250 – 5,868,303	+	6	53	64.27	-0.43	0.84	0.920324
13329	dm3.chrX	5,875,055 – 5,875,105	- - - intron="intron;ID=intron_CG14447:2_CG14447:3;Name=Grip-in;Parent=FBtr0070865;parent_type=mRNA" - - - -	18348	5,875,055 – 5,875,105	+	3	50	80.00	-1.61	0.89	0.932857
13329	dm3.chrX	5,875,055 – 5,875,105		18349	5,875,055 – 5,875,105	-	3	50	80.00	-2.24	0.98	0.993464
13330	dm3.chrX	5,875,243 – 5,875,304	- - - intron="intron;ID=intron_CG14447:2_CG14447:3;Name=Grip-in;Parent=FBtr0070865;parent_type=mRNA" - - - -	18350	5,875,243 – 5,875,304	+	6	63	92.43	-2.13	0.88	0.940136
13332	dm3.chrX	5,899,221 – 5,899,274	- - - - - - - -	18352	5,899,221 – 5,899,274	+	5	53	76.04	-1.58	0.79	0.962971
13333	dm3.chrX	5,910,119 – 5,910,209	- - - - - - - -	18354	5,910,119 – 5,910,209	-	3	90	96.27	-1.73	1.01	0.962227
13335	dm3.chrX	5,916,764 – 5,916,857	- - - - - - - -	18356	5,916,764 – 5,916,857	+	6	104	68.48	-1.70	0.53	0.969089
13337	dm3.chrX	5,925,865 – 5,925,990	- - - - - - - -	18358	5,925,865 – 5,925,990	+	3	125	91.73	-2.87	0.77	0.950388
13337	dm3.chrX	5,925,865 – 5,925,990	- - - - - - - -	18359	5,925,865 – 5,925,990	-	3	125	91.73	-3.37	0.89	0.996049
13339	dm3.chrX	5,931,541 – 5,931,591	- - - - - - - -	18361	5,931,541 – 5,931,591	-	5	55	60.96	-2.56	0.39	0.996580
13343	dm3.chrX	5,948,100 – 5,948,194	- - - intron="intron;ID=intron_FBgn0029835:1_FBgn0029835:2;Name=CG5921-in;Parent=FBtr0305342,FBtr0305343;parent_type=mRNA" - - - -	18365	5,948,100 – 5,948,194	-	4	94	97.16	-2.17	0.98	0.976549
13344	dm3.chrX	5,952,113 – 5,952,187	- - - intron="intron;ID=intron_FBgn0029835:1_FBgn0029835:2;Name=CG5921-in;Parent=FBtr0305342,FBtr0305343;parent_type=mRNA" - - - -	18366	5,952,113 – 5,952,187	+	4	81	70.57	-2.97	0.38	0.953193
13344	dm3.chrX	5,952,113 – 5,952,187		18367	5,952,113 – 5,952,187	-	4	81	70.57	-2.19	0.57	0.963204
13345	dm3.chrX	5,959,125 – 5,959,193	- - - - - - - -	18368	5,959,125 – 5,959,193	+	15	77	72.27	-1.00	0.55	0.918051
13347	dm3.chrX	5,971,207 – 5,971,363	- - - intron="intron;ID=intron_CG4666:1_CG4666:2;Name=CG4666-in;Parent=FBtr0070887;parent_type=mRNA" - - - -	18371	5,971,207 – 5,971,323	+	5	117	77.03	-2.76	0.86	0.997468
				18372	5,971,207 – 5,971,323	-	5	117	77.03	-2.87	0.79	0.997642
				18373	5,971,247 – 5,971,363	+	5	117	86.43	-2.92	0.77	0.990707
				18374	5,971,247 – 5,971,363	-	5	117	86.43	-2.87	0.85	0.994479
13352	dm3.chrX	6,004,043 – 6,004,175	- - - intron="intron;ID=intron_FBgn0029846:3_FBgn0029846:2;Name=Ca-alpha1T-in;Parent=FBtr0089393,FBtr0112953,FBtr0304609,FBtr0304610;parent_type=mRNA" - - - -	18381	6,004,043 – 6,004,175	+	5	133	93.05	-2.50	0.84	0.948819
13352	dm3.chrX	6,004,043 – 6,004,175		18382	6,004,043 – 6,004,175	-	5	133	93.05	-2.88	0.93	0.993801
13357	dm3.chrX	6,039,906 – 6,039,996	- - CDS="CDS;ID=CDS_FBgn0029846:25_880;Name=Ca-alpha1T-cds;Parent=FBtr0089393,FBtr0112953,FBtr0304609,FBtr0304610;parent_type=mRNA" - - - - -	18387	6,039,906 – 6,039,996	+	5	93	86.29	-1.78	0.86	0.918692
13358	dm3.chrX	6,056,574 – 6,056,705	- - - intron="intron;ID=intron_FBgn0029846:26_FBgn0029846:25;Name=Ca-alpha1T-in;Parent=FBtr0089393,FBtr0112953,FBtr0304609,FBtr0304610;parent_type=mRNA" - - - -	18389	6,056,574 – 6,056,685	-	3	113	71.17	-3.43	0.79	0.999220
13358	dm3.chrX	6,056,574 – 6,056,705		18390	6,056,614 – 6,056,705	+	4	92	88.38	-3.22	0.77	0.990692
13363	dm3.chrX	6,087,137 – 6,087,187	- - - - - - - -	18397	6,087,137 – 6,087,187	-	5	50	88.20	-2.85	0.72	0.971612
13369	dm3.chrX	6,154,743 – 6,154,853	- - - intron="intron;ID=intron_FBgn0040918:7_FBgn0040918:5;Name=schlank-in;Parent=FBtr0070938;parent_type=mRNA" - - - -	18404	6,154,743 – 6,154,836	-	5	97	86.96	-2.83	0.62	0.923587
13370	dm3.chrX	6,155,293 – 6,155,347	- - CDS="CDS;ID=CDS_FBgn0029853:1_1005;Name=CG3781-cds;Parent=FBtr0070895;parent_type=mRNA" intron="intron;ID=intron_FBgn0040918:7_FBgn0040918:5;Name=schlank-in;Parent=FBtr0070938;parent_type=mRNA" - - - -	18406	6,155,293 – 6,155,347	+	5	55	71.51	-1.87	0.51	0.932266
13370	dm3.chrX	6,155,293 – 6,155,347		18407	6,155,293 – 6,155,347	-	5	55	71.51	-2.72	0.58	0.998040
13371	dm3.chrX	6,158,233 – 6,158,349	- - - intron="intron;ID=intron_FBgn0040918:7_FBgn0040918:5;Name=schlank-in;Parent=FBtr0070938;parent_type=mRNA" - - - -	18408	6,158,233 – 6,158,349	-	5	119	84.18	-2.77	0.75	0.986658
13376	dm3.chrX	6,195,882 – 6,196,050	- - - - - - - -	18413	6,195,882 – 6,195,988	+	6	115	78.10	-1.84	0.67	0.936275
				18414	6,195,882 – 6,195,988	-	6	115	78.10	-2.00	0.69	0.967621
				18415	6,195,917 – 6,196,022	+	6	115	71.31	-2.69	0.62	0.998889
				18416	6,195,917 – 6,196,022	-	6	115	71.31	-2.89	0.60	0.999229
				18417	6,195,948 – 6,196,050	+	6	116	67.41	-2.05	0.55	0.995584
				18418	6,195,948 – 6,196,050	-	6	116	67.41	-2.65	0.42	0.995660
13377	dm3.chrX	6,201,243 – 6,201,369	- - - - - - - -	18419	6,201,243 – 6,201,334	-	7	104	68.63	-1.32	0.60	0.966980
13377	dm3.chrX	6,201,243 – 6,201,369	- - - - - - - -	18421	6,201,267 – 6,201,369	-	7	112	69.28	-1.21	0.65	0.966107
13383	dm3.chrX	6,237,262 – 6,237,352	- - CDS="CDS;ID=CDS_CG3842:2_933;Name=CG3842-cds;Parent=FBtr0070904;parent_type=mRNA" - - - - -	18428	6,237,262 – 6,237,352	+	5	93	77.74	-2.67	0.55	0.972031
13383	dm3.chrX	6,237,262 – 6,237,352		18429	6,237,262 – 6,237,352	-	5	93	77.74	-2.42	0.56	0.942657
13384	dm3.chrX	6,240,434 – 6,240,489	- - - - - - - -	18430	6,240,434 – 6,240,489	-	3	55	90.91	-1.64	0.98	0.947003
13385	dm3.chrX	6,246,550 – 6,246,604	- - - intron="intron;ID=intron_CG3861:4_CG3861:2;Name=kdn-in;Parent=FBtr0070907;parent_type=mRNA" - - - -	18431	6,246,550 – 6,246,604	+	6	62	72.29	-2.30	0.68	0.996691
13385	dm3.chrX	6,246,550 – 6,246,604		18432	6,246,550 – 6,246,604	-	6	62	72.29	-2.62	0.52	0.994580
13389	dm3.chrX	6,276,698 – 6,276,771	- - - - - - - -	18436	6,276,698 – 6,276,771	-	5	75	63.84	-1.33	0.55	0.979876
13394	dm3.chrX	6,307,881 – 6,307,986	- - - - - - - -	18442	6,307,881 – 6,307,986	+	12	120	87.38	-2.08	0.76	0.909198
13395	dm3.chrX	6,308,855 – 6,308,956	- - - - - - - -	18443	6,308,855 – 6,308,956	+	4	111	80.60	-2.57	0.58	0.901464
13399	dm3.chrX	6,322,749 – 6,322,833	- - - - - - - -	18448	6,322,749 – 6,322,833	-	7	85	89.30	-2.39	0.82	0.960217
13403	dm3.chrX	6,368,485 – 6,368,538	- - - - - - - -	18453	6,368,485 – 6,368,538	-	6	61	65.55	-1.93	0.65	0.995773
13404	dm3.chrX	6,368,784 – 6,368,881	- - - - - - - -	18454	6,368,784 – 6,368,881	+	6	109	72.36	-1.65	0.69	0.978611
13405	dm3.chrX	6,375,103 – 6,375,238	- - - - - - - -	18455	6,375,103 – 6,375,238	+	6	149	72.39	-1.73	0.55	0.928233
13406	dm3.chrX	6,378,688 – 6,378,749	- - - intron="intron;ID=intron_FBgn0259242:5_FBgn0259242:4;Name=CG42340-in;Parent=FBtr0299863;parent_type=mRNA" - - - -	18456	6,378,688 – 6,378,749	+	5	61	73.61	-2.73	0.62	0.997903
13406	dm3.chrX	6,378,688 – 6,378,749		18457	6,378,688 – 6,378,749	-	5	61	73.61	-2.60	0.51	0.990448
13417	dm3.chrX	6,445,271 – 6,445,366	- - - intron="intron;ID=intron_FBgn0085446:3_FBgn0085446:4;Name=CG34417-in;Parent=FBtr0303205;parent_type=mRNA" - - - -	18471	6,445,271 – 6,445,366	+	4	95	86.24	-2.81	0.62	0.910624
13420	dm3.chrX	6,452,118 – 6,452,229	- - CDS="CDS;ID=CDS_FBgn0085446:8_1005;Name=CG34417-cds;Parent=FBtr0303206;parent_type=mRNA" - - - - -	18477	6,452,118 – 6,452,229	+	12	114	70.08	-1.86	0.38	0.931479
13423	dm3.chrX	6,470,342 – 6,470,466	- - - intron="intron;ID=intron_FBgn0085446:10_FBgn0085446:11;Name=CG34417-in;Parent=FBtr0301323;parent_type=mRNA" - - - -	18480	6,470,342 – 6,470,435	+	8	117	64.54	-1.88	0.51	0.991173
				18481	6,470,342 – 6,470,435	-	8	117	64.54	-2.10	0.58	0.998081
				18482	6,470,375 – 6,470,466	+	9	114	59.50	-2.46	0.28	0.985896
13424	dm3.chrX	6,472,491 – 6,472,600	- - - intron="intron;ID=intron_FBgn0085446:14_FBgn0085446:17;Name=CG34417-in;Parent=FBtr0301323;parent_type=mRNA" - - - -	18484	6,472,491 – 6,472,600	+	6	109	71.53	-1.67	0.50	0.935439
13424	dm3.chrX	6,472,491 – 6,472,600		18485	6,472,491 – 6,472,600	-	6	109	71.53	-1.73	0.54	0.969857
13425	dm3.chrX	6,482,619 – 6,482,709	- - - - - - - -	18486	6,482,619 – 6,482,709	-	3	90	94.81	-2.16	0.92	0.942312
13426	dm3.chrX	6,486,188 – 6,486,286	- - - intron="intron;ID=intron_CG10695:2_CG10695:3;Name=Pat1-in;Parent=FBtr0070945;parent_type=mRNA" - - - -	18487	6,486,188 – 6,486,286	+	3	98	84.78	-3.37	0.64	0.982207
13426	dm3.chrX	6,486,188 – 6,486,286		18488	6,486,188 – 6,486,286	-	3	98	84.78	-3.14	0.67	0.974721
13431	dm3.chrX	6,510,204 – 6,510,303	- - - intron="intron;ID=intron_CG3973:2_CG3973:3;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18496	6,510,204 – 6,510,303	+	5	103	85.69	-2.09	0.76	0.902458
13432	dm3.chrX	6,510,947 – 6,511,074	- - - intron="intron;ID=intron_CG3973:2_CG3973:3;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18498	6,510,999 – 6,511,074	-	5	75	97.02	-1.30	1.09	0.978949
13435	dm3.chrX	6,531,112 – 6,531,180	- - - intron="intron;ID=intron_CG3973:3_CG3973:4;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18502	6,531,112 – 6,531,180	-	5	69	97.95	-2.71	0.91	0.976449
13436	dm3.chrX	6,531,209 – 6,531,260	- - - intron="intron;ID=intron_CG3973:3_CG3973:4;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18503	6,531,209 – 6,531,260	+	5	53	92.28	-3.30	0.89	0.996199
13437	dm3.chrX	6,533,774 – 6,533,896	- - - intron="intron;ID=intron_CG3973:3_CG3973:4;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18506	6,533,783 – 6,533,896	-	4	113	87.35	-2.33	0.91	0.984641
13439	dm3.chrX	6,548,653 – 6,548,755	- - - - - - - -	18508	6,548,653 – 6,548,755	+	6	118	79.26	-2.22	0.61	0.939059
13439	dm3.chrX	6,548,653 – 6,548,755	- - - - - - - -	18509	6,548,653 – 6,548,755	-	6	118	79.26	-2.04	0.81	0.982343
13440	dm3.chrX	6,586,019 – 6,586,155	- - - intron="intron;ID=intron_FBgn0029893:3_FBgn0029893:1;Name=CG14442-in;Parent=FBtr0070988;parent_type=mRNA" - - - -	18510	6,586,019 – 6,586,127	+	5	108	97.59	-2.11	0.92	0.917277
				18511	6,586,019 – 6,586,127	-	5	108	97.59	-3.11	0.99	0.996667
				18512	6,586,048 – 6,586,155	-	5	107	98.13	-1.74	0.99	0.939434
13444	dm3.chrX	6,602,843 – 6,602,947	- - - intron="intron;ID=intron_FBgn0029895:1_FBgn0029895:2;Name=CG14441-in;Parent=FBtr0070959;parent_type=mRNA" - - - -	18516	6,602,843 – 6,602,947	-	6	105	72.06	-2.11	0.41	0.914441
13446	dm3.chrX	6,615,403 – 6,615,504	- - - - - - - -	18518	6,615,403 – 6,615,504	-	6	110	64.43	-1.90	0.47	0.989721
13454	dm3.chrX	6,638,471 – 6,638,578	FBnoncoding="tRNA;ID=FBtr0070979;Name=tRNA:CR32740-RA;Parent=FBgn0052740;Alias=CR32740-RA;Dbxref=FlyBase_Annotation_IDs:CR32740-RA;score_text=Weakly" tRNAscann="Phe_chrX_trna25" - - "Rfam_10.0=RF00005;tRNA;AAPN01177114.1/5440-5512\|2.8e-26" - - -	18527	6,638,471 – 6,638,578	+	11	112	82.38	-2.80	0.98	0.997590
13455	dm3.chrX	6,640,800 – 6,640,991	- - - - - - - -	18529	6,640,800 – 6,640,911	+	5	114	76.96	-2.44	0.65	0.981764
				18531	6,640,879 – 6,640,991	+	5	115	68.95	-2.36	0.39	0.939998
				18532	6,640,879 – 6,640,991	-	5	115	68.95	-1.83	0.48	0.924682
13459	dm3.chrX	6,669,032 – 6,669,090	- - - intron="intron;ID=intron_CG3135:1_CG3135:2;Name=shf-in;Parent=FBtr0070978;parent_type=mRNA" - - - -	18538	6,669,032 – 6,669,090	-	4	58	70.69	-1.68	0.64	0.954288
13460	dm3.chrX	6,673,240 – 6,673,370	- - - intron="intron;ID=intron_CG3135:1_CG3135:2;Name=shf-in;Parent=FBtr0070978;parent_type=mRNA" - - - -	18539	6,673,240 – 6,673,330	-	4	121	73.13	-2.17	0.62	0.979874
13462	dm3.chrX	6,689,133 – 6,689,188	- - - intron="intron;ID=intron_FBgn0259228:16_FBgn0259228:15;Name=C3G-in;Parent=FBtr0299792,FBtr0299795;parent_type=mRNA" - - - -	18542	6,689,133 – 6,689,188	+	7	59	79.68	-1.66	0.73	0.919611
13464	dm3.chrX	6,707,873 – 6,707,937	- - - - - - - -	18545	6,707,873 – 6,707,937	-	5	64	62.38	-1.46	0.47	0.969775
13465	dm3.chrX	6,716,939 – 6,717,054	- - - - - - - -	18546	6,716,939 – 6,717,054	+	10	116	61.78	-1.22	0.48	0.983982
13465	dm3.chrX	6,716,939 – 6,717,054	- - - - - - - -	18547	6,716,939 – 6,717,054	-	10	116	61.78	-0.94	0.48	0.954287
13467	dm3.chrX	6,732,906 – 6,732,999	- - - - - - - -	18549	6,732,906 – 6,732,999	+	5	93	89.96	-1.62	0.96	0.939229
13468	dm3.chrX	6,734,125 – 6,734,235	- - - - - - - -	18551	6,734,125 – 6,734,235	-	5	120	84.92	-2.31	0.78	0.959365
13471	dm3.chrX	6,753,180 – 6,753,296	- - - - - - - -	18557	6,753,180 – 6,753,296	-	5	116	81.93	-2.20	0.72	0.949715
13473	dm3.chrX	6,765,684 – 6,765,774	- - - intron="intron;ID=intron_CG33692:4_CG33692:5;Name=CG33692-in;Parent=FBtr0091675;parent_type=mRNA" - - - -	18559	6,765,684 – 6,765,774	-	5	95	90.96	-3.12	0.73	0.974222
13477	dm3.chrX	6,784,049 – 6,784,192	- - - - - - - -	18564	6,784,049 – 6,784,192	+	11	164	72.22	-2.56	0.48	0.995302
13477	dm3.chrX	6,784,049 – 6,784,192	- - - - - - - -	18565	6,784,049 – 6,784,192	-	11	164	72.22	-2.03	0.46	0.961454
13480	dm3.chrX	6,806,672 – 6,806,765	- - - - - - - -	18568	6,806,672 – 6,806,765	+	8	110	66.96	-2.15	0.44	0.993082
13480	dm3.chrX	6,806,672 – 6,806,765	- - - - - - - -	18569	6,806,672 – 6,806,765	-	8	110	66.96	-1.81	0.38	0.928241
13482	dm3.chrX	6,812,433 – 6,812,566	- - - intron="intron;ID=intron_FBgn0029922:1_FBgn0029922:2;Name=CG14431-in;Parent=FBtr0304108;parent_type=mRNA" - - - -	18571	6,812,433 – 6,812,526	+	4	94	82.87	-2.97	0.64	0.979155
				18573	6,812,449 – 6,812,566	+	5	123	75.73	-2.46	0.47	0.919848
				18574	6,812,449 – 6,812,566	-	5	123	75.73	-3.20	0.58	0.997863
13483	dm3.chrX	6,814,958 – 6,815,054	- - - intron="intron;ID=intron_FBgn0029922:1_FBgn0029922:2;Name=CG14431-in;Parent=FBtr0304108;parent_type=mRNA" - - - -	18575	6,814,958 – 6,815,054	-	12	120	85.03	-2.71	0.73	0.985545
13489	dm3.chrX	6,874,902 – 6,874,967	- - - - - - - -	18581	6,874,902 – 6,874,967	-	5	65	91.23	-1.90	0.89	0.911065
13494	dm3.chrX	6,901,579 – 6,901,703	- - - intron="intron;ID=intron_FBgn0027106:5_FBgn0027106:4;Name=inx7-in;Parent=FBtr0071034;parent_type=mRNA" - - - -	18587	6,901,579 – 6,901,672	-	7	113	65.34	-2.20	0.45	0.990095
13495	dm3.chrX	6,910,597 – 6,910,687	- - - - - - - -	18589	6,910,597 – 6,910,687	-	5	96	72.62	-2.27	0.71	0.996649
13497	dm3.chrX	6,939,761 – 6,939,866	- - - intron="intron;ID=intron_FBgn0029930:7_FBgn0029930:6;Name=CG12541-in;Parent=FBtr0300759;parent_type=mRNA" - - - -	18591	6,939,761 – 6,939,866	-	6	117	68.99	-1.71	0.61	0.986188
13502	dm3.chrX	6,961,734 – 6,961,799	- - - - - - - -	18597	6,961,734 – 6,961,799	+	6	65	65.95	-2.98	0.54	0.999872
13507	dm3.chrX	7,028,572 – 7,028,630	- - - - - - - -	18602	7,028,572 – 7,028,630	+	4	60	71.14	-1.65	0.67	0.940184
13508	dm3.chrX	7,032,140 – 7,032,212	- - - - - - - -	18604	7,032,140 – 7,032,212	-	3	72	90.74	-1.85	0.97	0.963813
13509	dm3.chrX	7,042,164 – 7,042,258	FBnoncoding="ncRNA;ID=FBtr0071016;Name=CR32730-RA;Parent=FBgn0047092;Alias=CG:X.3:tmp:78-RA;Dbxref=FlyBase_Annotation_IDs:CR32730-RA,REFSEQ:NR_002102;score_text=Moderately" - - - - - - -	18605	7,042,164 – 7,042,258	-	11	100	83.64	-2.18	0.66	0.938936
13514	dm3.chrX	7,087,389 – 7,087,489	- - - intron="intron;ID=intron_FBgn0029939:1_FBgn0029939:2;Name=CG9650-in;Parent=FBtr0301240;parent_type=mRNA" - - - -	18610	7,087,389 – 7,087,489	+	4	107	94.20	-1.72	0.99	0.955215
13520	dm3.chrX	7,154,602 – 7,154,701	- - - - - - - -	18616	7,154,602 – 7,154,701	+	3	99	76.49	-2.74	0.59	0.965203
13527	dm3.chrX	7,229,705 – 7,229,812	- - - - - - - -	18626	7,229,705 – 7,229,812	-	3	107	84.97	-1.93	0.93	0.965898
13531	dm3.chrX	7,248,877 – 7,248,988	- - - - - - - -	18630	7,248,877 – 7,248,983	+	7	111	69.10	-1.88	0.69	0.997246
				18631	7,248,877 – 7,248,983	-	7	111	69.10	-1.46	0.56	0.968261
				18632	7,248,881 – 7,248,988	+	7	112	66.93	-2.24	0.58	0.998944
				18633	7,248,881 – 7,248,988	-	7	112	66.93	-1.78	0.57	0.995359
13537	dm3.chrX	7,276,009 – 7,276,100	- - - - - - - -	18641	7,276,009 – 7,276,100	-	9	99	68.56	-2.72	0.52	0.999517
13539	dm3.chrX	7,278,618 – 7,278,715	- - - - - - - -	18643	7,278,618 – 7,278,715	+	3	97	95.85	-2.51	0.99	0.991431
13542	dm3.chrX	7,299,685 – 7,299,805	- - - - - - - -	18646	7,299,685 – 7,299,805	+	3	120	90.56	-2.61	0.89	0.982828
13548	dm3.chrX	7,331,156 – 7,331,256	- - - - - - - -	18652	7,331,156 – 7,331,256	+	9	121	68.64	-1.51	0.57	0.980591
13550	dm3.chrX	7,337,842 – 7,337,976	- - - - - - - -	18654	7,337,842 – 7,337,976	+	6	157	68.10	-2.28	0.46	0.988343
13551	dm3.chrX	7,349,140 – 7,349,264	- - - - - - - -	18657	7,349,163 – 7,349,264	+	7	111	78.28	-1.78	0.69	0.936761
13554	dm3.chrX	7,377,494 – 7,377,597	- - - - - - - -	18661	7,377,494 – 7,377,597	+	11	112	80.07	-2.74	0.57	0.992670
13557	dm3.chrX	7,408,566 – 7,408,710	- - - - - - - -	18664	7,408,566 – 7,408,710	-	8	145	86.72	-2.37	0.77	0.967455
13558	dm3.chrX	7,409,594 – 7,409,684	- - - - - - - -	18665	7,409,594 – 7,409,684	+	7	99	73.90	-2.39	0.57	0.992536
13560	dm3.chrX	7,417,750 – 7,417,870	- - - - - - - -	18668	7,417,750 – 7,417,870	-	3	120	91.09	-2.91	0.88	0.989994
13564	dm3.chrX	7,452,038 – 7,452,179	- - - - - - - -	18673	7,452,038 – 7,452,179	-	7	164	79.28	-2.52	0.52	0.946099
13566	dm3.chrX	7,464,586 – 7,464,639	- - - - - - - -	18675	7,464,586 – 7,464,639	+	7	63	74.16	-2.14	0.50	0.939471
13567	dm3.chrX	7,465,839 – 7,465,935	- - - - - - - -	18676	7,465,839 – 7,465,935	+	12	115	76.90	-2.38	0.58	0.978988
13567	dm3.chrX	7,465,839 – 7,465,935	- - - - - - - -	18677	7,465,839 – 7,465,935	-	12	115	76.90	-2.47	0.74	0.995597
13569	dm3.chrX	7,475,887 – 7,475,981	- - - - - - - -	18679	7,475,887 – 7,475,979	+	11	93	92.12	-2.60	0.81	0.960874
13569	dm3.chrX	7,475,887 – 7,475,981	- - - - - - - -	18680	7,475,889 – 7,475,981	+	11	93	91.17	-2.20	0.84	0.935200
13570	dm3.chrX	7,480,839 – 7,480,931	- - - - - - - -	18681	7,480,839 – 7,480,931	+	11	100	71.91	-1.50	0.53	0.961815
13571	dm3.chrX	7,482,071 – 7,482,163	- - - - - - - -	18682	7,482,071 – 7,482,163	+	5	120	72.77	-2.13	0.74	0.989485
13571	dm3.chrX	7,482,071 – 7,482,163	- - - - - - - -	18683	7,482,071 – 7,482,163	-	5	120	72.77	-1.40	0.82	0.944859
13578	dm3.chrX	7,548,400 – 7,548,506	- - - intron="intron;ID=intron_FBgn0004198:5_FBgn0004198:7;Name=ct-in;Parent=FBtr0071068,FBtr0114613,FBtr0305134;parent_type=mRNA" - - - -	18691	7,548,400 – 7,548,506	+	8	116	66.72	-1.74	0.52	0.992210
13579	dm3.chrX	7,551,854 – 7,551,913	- - - intron="intron;ID=intron_FBgn0004198:5_FBgn0004198:7;Name=ct-in;Parent=FBtr0071068,FBtr0114613,FBtr0305134;parent_type=mRNA" - - - -	18692	7,551,854 – 7,551,913	-	8	74	71.27	-2.22	0.59	0.992409
13584	dm3.chrX	7,597,510 – 7,597,561	- - - - - - - -	18699	7,597,510 – 7,597,561	+	4	54	96.19	-1.88	0.95	0.925972
13585	dm3.chrX	7,604,863 – 7,604,965	- - - - - - - -	18701	7,604,863 – 7,604,965	-	5	108	62.17	-1.44	0.51	0.978641
13589	dm3.chrX	7,645,901 – 7,645,993	- - - - - - - -	18706	7,645,901 – 7,645,993	+	4	92	92.03	-1.98	0.90	0.924916
13592	dm3.chrX	7,652,048 – 7,652,144	- - - - - - - -	18709	7,652,048 – 7,652,144	+	11	107	77.34	-1.54	0.75	0.949538
13593	dm3.chrX	7,653,366 – 7,653,417	- - - - - - - -	18710	7,653,366 – 7,653,417	-	7	51	92.72	-1.88	0.90	0.909466
13599	dm3.chrX	7,722,948 – 7,723,068	- - - intron="intron;ID=intron_FBgn0029962:1_FBgn0029962:2;Name=CG1402-in;Parent=FBtr0300019;parent_type=mRNA" - - - -	18718	7,722,948 – 7,723,041	+	9	114	85.74	-2.22	0.75	0.940502
13601	dm3.chrX	7,726,728 – 7,726,831	- - - intron="intron;ID=intron_FBgn0029962:1_FBgn0029962:2;Name=CG1402-in;Parent=FBtr0300019;parent_type=mRNA" - - - -	18721	7,726,728 – 7,726,831	-	3	103	87.67	-2.08	0.89	0.946439
13603	dm3.chrX	7,728,271 – 7,728,431	- - - intron="intron;ID=intron_FBgn0029962:1_FBgn0029962:2;Name=CG1402-in;Parent=FBtr0300019;parent_type=mRNA" - - - -	18724	7,728,271 – 7,728,379	-	9	111	75.07	-1.06	0.88	0.957468
13604	dm3.chrX	7,735,541 – 7,735,671	- - - - - - - -	18728	7,735,541 – 7,735,671	+	5	132	81.09	-3.05	0.72	0.996193
13605	dm3.chrX	7,737,923 – 7,737,984	- - - - - - - -	18729	7,737,923 – 7,737,984	-	4	61	69.42	-1.77	0.59	0.961567
13607	dm3.chrX	7,744,189 – 7,744,265	- - - - - - - -	18731	7,744,189 – 7,744,265	-	5	79	82.75	-2.43	0.66	0.944939
13608	dm3.chrX	7,749,412 – 7,749,493	- - - - - - - -	18732	7,749,412 – 7,749,493	+	9	88	74.63	-2.22	0.50	0.985357
13608	dm3.chrX	7,749,412 – 7,749,493	- - - - - - - -	18733	7,749,412 – 7,749,493	-	9	88	74.63	-2.02	0.56	0.987201
13609	dm3.chrX	7,749,793 – 7,749,895	- - - - - - - -	18734	7,749,793 – 7,749,895	+	8	110	57.20	-2.65	0.22	0.991750
13612	dm3.chrX	7,811,058 – 7,811,183	- - CDS="CDS;ID=CDS_CG1514:11_941;Name=snz-cds;Parent=FBtr0071092;parent_type=mRNA" - - - - -	18738	7,811,058 – 7,811,154	+	10	108	68.78	-1.40	0.50	0.926402
13612	dm3.chrX	7,811,058 – 7,811,183		18739	7,811,082 – 7,811,183	+	10	105	66.00	-1.44	0.44	0.953657
13615	dm3.chrX	7,828,592 – 7,828,727	- - - - - - - -	18742	7,828,592 – 7,828,727	+	8	135	70.11	-2.49	0.45	0.995533
13617	dm3.chrX	7,862,120 – 7,862,213	- - - - - - - -	18744	7,862,120 – 7,862,213	+	4	98	64.43	-1.36	0.63	0.974852
13619	dm3.chrX	7,875,805 – 7,875,917	- - - intron="intron;ID=intron_FBgn0003447:6_FBgn0003447:7;Name=sn-in;Parent=FBtr0071101;parent_type=mRNA" - - - -	18746	7,875,805 – 7,875,917	-	7	127	61.77	-1.88	0.53	0.998257
13621	dm3.chrX	7,885,996 – 7,886,053	- - - - - - - -	18748	7,885,996 – 7,886,053	-	3	58	94.22	-1.91	0.98	0.964592
13624	dm3.chrX	7,901,808 – 7,901,866	- - - intron="intron;ID=intron_CG1543:10_CG1543:4;Name=Tbh-in;Parent=FBtr0089999;parent_type=mRNA" - - - -	18751	7,901,808 – 7,901,866	+	5	62	80.20	-1.30	0.91	0.918756
13627	dm3.chrX	7,914,317 – 7,914,375	- - CDS="CDS;ID=CDS_FBgn0029989:1_949;Name=CG15333-cds;Parent=FBtr0071124;parent_type=mRNA" intron="intron;ID=intron_CG1543:10_CG1543:4;Name=Tbh-in;Parent=FBtr0089999;parent_type=mRNA" - - - -	18754	7,914,317 – 7,914,375	+	8	62	62.95	-1.93	0.45	0.996454
13628	dm3.chrX	7,952,825 – 7,952,901	- - - - - - - -	18755	7,952,825 – 7,952,901	+	11	81	80.78	-2.10	0.65	0.972453
13633	dm3.chrX	7,980,729 – 7,980,789	- - - intron="intron;ID=intron_FBgn0029995:5_FBgn0029995:4;Name=CG2256-in;Parent=FBtr0301736;parent_type=mRNA" - - - -	18761	7,980,729 – 7,980,789	-	5	61	65.55	-1.62	0.65	0.994808
13635	dm3.chrX	8,001,055 – 8,001,201	- - - - - - - -	18764	8,001,055 – 8,001,201	-	3	149	86.04	-3.63	0.63	0.989434
13637	dm3.chrX	8,015,450 – 8,015,557	- - - - - - - -	18766	8,015,450 – 8,015,557	-	11	114	54.69	-2.29	0.44	0.999753
13641	dm3.chrX	8,061,793 – 8,061,913	- - - - - - - -	18772	8,061,821 – 8,061,913	+	12	120	73.26	-1.80	0.51	0.936486
13648	dm3.chrX	8,101,928 – 8,102,033	- - - intron="intron;ID=intron_FBgn0003349:7_FBgn0003349:8;Name=sdt-in;Parent=FBtr0100376;parent_type=mRNA" - - - -	18781	8,101,928 – 8,102,033	+	6	107	61.32	-1.85	0.41	0.988765
13650	dm3.chrX	8,109,160 – 8,109,274	- - - intron="intron;ID=intron_FBgn0003349:9_FBgn0003349:13;Name=sdt-in;Parent=FBtr0089978,FBtr0100376,FBtr0100375;parent_type=mRNA" - - - -	18785	8,109,160 – 8,109,272	-	7	117	64.16	-1.52	0.39	0.931595
13652	dm3.chrX	8,112,695 – 8,112,766	- - - intron="intron;ID=intron_FBgn0003349:12_FBgn0003349:13;Name=sdt-in;Parent=FBtr0089977,FBtr0089974;parent_type=mRNA" - - - -	18788	8,112,695 – 8,112,766	+	8	79	78.38	-3.13	0.42	0.982240
13653	dm3.chrX	8,113,309 – 8,113,387	- - - intron="intron;ID=intron_FBgn0003349:12_FBgn0003349:13;Name=sdt-in;Parent=FBtr0089977,FBtr0089974;parent_type=mRNA" - - - -	18789	8,113,309 – 8,113,387	+	7	78	73.43	-2.12	0.41	0.936881
13654	dm3.chrX	8,114,542 – 8,114,636	- - - intron="intron;ID=intron_FBgn0003349:12_FBgn0003349:13;Name=sdt-in;Parent=FBtr0089977,FBtr0089974;parent_type=mRNA" - - - -	18792	8,114,542 – 8,114,636	-	6	103	85.69	-2.71	0.79	0.989553
13656	dm3.chrX	8,135,252 – 8,135,344	- - CDS="CDS;ID=CDS_CG2147:2_933;Name=CG2147-cds;Parent=FBtr0071166;parent_type=mRNA" - - - - -	18794	8,135,252 – 8,135,344	-	6	112	73.46	-1.84	0.57	0.922849
13660	dm3.chrX	8,168,084 – 8,168,142	- - - intron="intron;ID=intron_FBgn0030030:1_FBgn0030030:2;Name=CG1636-in;Parent=FBtr0071171;parent_type=mRNA" - - - -	18798	8,168,084 – 8,168,142	+	6	76	59.39	-2.18	0.61	0.999231
13660	dm3.chrX	8,168,084 – 8,168,142		18799	8,168,084 – 8,168,142	-	6	76	59.39	-1.15	0.61	0.981408
13661	dm3.chrX	8,189,458 – 8,189,600	- - - intron="intron;ID=intron_FBgn0015519:7_FBgn0015519:6;Name=nAcRalpha-7E-in;Parent=FBtr0289988;parent_type=mRNA" - - - -	18801	8,189,458 – 8,189,600	-	4	143	61.42	-1.72	0.56	0.976835
13662	dm3.chrX	8,192,596 – 8,192,650	- - - intron="intron;ID=intron_FBgn0015519:7_FBgn0015519:6;Name=nAcRalpha-7E-in;Parent=FBtr0289988;parent_type=mRNA" - - - -	18802	8,192,596 – 8,192,650	+	4	54	71.21	-1.41	0.74	0.944737
13671	dm3.chrX	8,266,346 – 8,266,439	- - - - - - - -	18811	8,266,346 – 8,266,439	+	4	93	66.11	-2.06	0.45	0.943587
13672	dm3.chrX	8,271,357 – 8,271,449	- - - - - - - -	18813	8,271,357 – 8,271,449	+	5	92	80.75	-2.35	0.60	0.911616
13675	dm3.chrX	8,293,393 – 8,293,446	- - - - - - - -	18816	8,293,393 – 8,293,446	+	12	53	96.51	-3.22	0.89	0.992665
13676	dm3.chrX	8,305,393 – 8,305,605	- - - intron="intron;ID=intron_FBgn0026758:2_FBgn0026758:3;Name=Trf2-in;Parent=FBtr0112927;parent_type=mRNA" - - - -	18817	8,305,393 – 8,305,510	+	5	120	75.69	-2.74	0.49	0.979058
				18818	8,305,393 – 8,305,510	-	5	120	75.69	-3.09	0.56	0.996926
				18820	8,305,470 – 8,305,570	-	4	120	85.76	-3.86	0.75	0.997994
13680	dm3.chrX	8,355,599 – 8,355,651	- - CDS="CDS;ID=CDS_FBgn0023506:1_1002;Name=Es2-cds;Parent=FBtr0071198;parent_type=mRNA" - - - - -	18826	8,355,599 – 8,355,651	+	6	52	64.06	-1.09	0.60	0.982065
13687	dm3.chrX	8,395,743 – 8,395,850	- - - intron="intron;ID=intron_FBgn0053181:2_FBgn0053181:5;Name=CG33181-in;Parent=FBtr0113451;parent_type=mRNA" - - - -	18833	8,395,743 – 8,395,850	+	4	133	62.42	-2.37	0.39	0.971986
13688	dm3.chrX	8,401,025 – 8,401,124	- - - intron="intron;ID=intron_FBgn0053181:3_FBgn0053181:5;Name=CG33181-in;Parent=FBtr0113455;parent_type=mRNA" - - - -	18834	8,401,025 – 8,401,124	+	5	110	77.95	-2.61	0.60	0.984305
13691	dm3.chrX	8,411,212 – 8,411,359	- - - - - - - -	18839	8,411,212 – 8,411,359	-	5	148	62.65	-2.23	0.43	0.992016
13696	dm3.chrX	8,466,867 – 8,466,921	- - CDS="CDS;ID=CDS_FBgn0030051:5_969;Name=spirit-cds;Parent=FBtr0071231;parent_type=mRNA" - - - - -	18845	8,466,867 – 8,466,921	-	6	65	68.09	-1.75	0.91	0.992919
13698	dm3.chrX	8,484,977 – 8,485,093	- - - - - - - -	18847	8,484,977 – 8,485,093	+	5	116	90.69	-2.14	0.84	0.916012
13703	dm3.chrX	8,558,411 – 8,558,476	- - - - - - - -	18854	8,558,411 – 8,558,476	-	8	68	66.54	-1.54	0.47	0.957440
13706	dm3.chrX	8,563,422 – 8,563,567	- - - - - - - -	18858	8,563,422 – 8,563,521	+	5	118	69.79	-2.66	0.59	0.998058
				18860	8,563,453 – 8,563,558	+	11	119	71.67	-2.17	0.51	0.993359
				18861	8,563,459 – 8,563,567	+	7	108	81.36	-1.92	0.68	0.939395
13713	dm3.chrX	8,633,560 – 8,633,613	- - - - - - - -	18869	8,633,560 – 8,633,613	-	8	62	68.01	-1.58	0.59	0.990476
13715	dm3.chrX	8,641,970 – 8,642,085	- - - - - - - -	18871	8,641,970 – 8,642,085	+	9	117	67.68	-1.62	0.43	0.974867
13720	dm3.chrX	8,676,108 – 8,676,163	- - - intron="intron;ID=intron_CG11354:3_CG11354:4;Name=Lim1-in;Parent=FBtr0071279;parent_type=mRNA" - - - -	18876	8,676,108 – 8,676,163	-	7	65	78.61	-1.52	0.78	0.929745
13721	dm3.chrX	8,680,076 – 8,680,152	- - - intron="intron;ID=intron_CG11354:3_CG11354:4;Name=Lim1-in;Parent=FBtr0071279;parent_type=mRNA" - - - -	18877	8,680,076 – 8,680,152	+	9	77	76.67	-1.63	0.70	0.975291
13724	dm3.chrX	8,698,058 – 8,698,108	- - - intron="intron;ID=intron_CG11354:1_CG11354:2;Name=Lim1-in;Parent=FBtr0071279;parent_type=mRNA" - - - -	18881	8,698,058 – 8,698,108	-	4	59	79.10	-2.19	0.84	0.987933
13726	dm3.chrX	8,705,854 – 8,705,992	- - - - - - - -	18884	8,705,887 – 8,705,992	+	5	105	95.81	-1.86	0.94	0.914157
13727	dm3.chrX	8,710,723 – 8,710,783	- - - - - - - -	18886	8,710,723 – 8,710,783	+	9	67	74.73	-2.48	0.61	0.996196
13731	dm3.chrX	8,735,928 – 8,735,987	- - - - - - - -	18891	8,735,928 – 8,735,987	+	12	65	72.69	-1.85	0.49	0.940696
13735	dm3.chrX	8,773,296 – 8,773,369	- - - - - - - -	18895	8,773,296 – 8,773,369	+	10	76	75.41	-1.76	0.56	0.955194
13736	dm3.chrX	8,780,254 – 8,780,381	- - - intron="intron;ID=intron_CG10701:1_CG10701:2;Name=Moe-in;Parent=FBtr0071278,FBtr0071269;parent_type=mRNA" - - - -	18896	8,780,254 – 8,780,351	-	5	97	85.67	-2.18	0.78	0.938417
13745	dm3.chrX	8,873,066 – 8,873,164	- - - - - - - -	18909	8,873,066 – 8,873,164	-	4	99	70.34	-2.13	0.65	0.985318
13746	dm3.chrX	8,875,206 – 8,875,300	- - - intron="intron;ID=intron_CG10962:2_CG10962:3;Name=CG10962-in;Parent=FBtr0071262;parent_type=mRNA" - - - -	18910	8,875,206 – 8,875,300	-	5	111	58.53	-1.47	0.40	0.911378
13747	dm3.chrX	8,876,268 – 8,876,370	- - - intron="intron;ID=intron_CG10962:2_CG10962:3;Name=CG10962-in;Parent=FBtr0071262;parent_type=mRNA" - - - -	18912	8,876,268 – 8,876,370	-	12	122	78.96	-2.14	0.65	0.978169
13754	dm3.chrX	8,904,134 – 8,904,228	- - - intron="intron;ID=intron_FBgn0261549:7_FBgn0261549:9;Name=rdgA-in;Parent=FBtr0302665;parent_type=mRNA" - - - -	18920	8,904,134 – 8,904,228	-	5	94	95.32	-2.51	0.94	0.984343
13756	dm3.chrX	8,914,201 – 8,914,297	- - - intron="intron;ID=intron_FBgn0261549:15_FBgn0261549:16;Name=rdgA-in;Parent=FBtr0302660,FBtr0302661,FBtr0302662,FBtr0302663,FBtr0302664,FBtr0302665;parent_type=mRNA" - - - -	18923	8,914,201 – 8,914,297	+	5	96	71.35	-2.12	0.48	0.966838
13756	dm3.chrX	8,914,201 – 8,914,297		18924	8,914,201 – 8,914,297	-	5	96	71.35	-2.00	0.69	0.994894
13757	dm3.chrX	8,914,360 – 8,914,454	- - - intron="intron;ID=intron_FBgn0261549:15_FBgn0261549:16;Name=rdgA-in;Parent=FBtr0302660,FBtr0302661,FBtr0302662,FBtr0302663,FBtr0302664,FBtr0302665;parent_type=mRNA" - - - -	18925	8,914,360 – 8,914,454	+	4	94	82.39	-3.46	0.81	0.998379
13757	dm3.chrX	8,914,360 – 8,914,454		18926	8,914,360 – 8,914,454	-	4	94	82.39	-4.10	0.82	0.999279
13761	dm3.chrX	8,985,257 – 8,985,353	FBnoncoding="pre_miRNA;ID=FBtr0304369;Name=mir-13b-2-RM;Parent=FBgn0262421;Alias=CR42972-RM;Dbxref=FlyBase_Annotation_IDs:CR42972-RM,miRBase:MI0000135" - - intron="intron;ID=intron_FBgn0030086:3_FBgn0030086:4;Name=CG7033-in;Parent=FBtr0071291,FBtr0071289;parent_type=mRNA" "Rfam_10.0=RF00047;mir-2;AAKO01003387.1/9775-9842\|4.2e-31" "Noncode_2.0=n178676_u177774_NW_045688_miRNA_Anopheles\|2.0e-08" "unique_Noncode_2.0=u177774_miRNA_Anopheles\|1.7e-08" "mirBase_v16=dme-mir-13b-2\|1.3e-34"	18930	8,985,257 – 8,985,347	+	13	110	71.72	-4.71	0.42	0.999926
				18931	8,985,257 – 8,985,347	-	13	110	71.72	-4.03	0.57	0.999930
				18932	8,985,257 – 8,985,353	+	13	104	69.95	-4.34	0.54	0.999977
				18933	8,985,257 – 8,985,353	-	13	104	69.95	-3.66	0.56	0.999956
13765	dm3.chrX	9,021,613 – 9,021,714	- - - intron="intron;ID=intron_CG12664:1_CG12664:2;Name=fend-in;Parent=FBtr0071349;parent_type=mRNA" - - - -	18938	9,021,613 – 9,021,714	-	7	102	67.97	-1.22	0.55	0.928700
13768	dm3.chrX	9,025,239 – 9,025,354	- - - intron="intron;ID=intron_CG12664:1_CG12664:2;Name=fend-in;Parent=FBtr0071349;parent_type=mRNA" - - - -	18942	9,025,239 – 9,025,354	-	5	120	92.73	-2.40	0.93	0.982318
13770	dm3.chrX	9,027,444 – 9,027,528	- - - intron="intron;ID=intron_CG12664:1_CG12664:2;Name=fend-in;Parent=FBtr0071349;parent_type=mRNA" - - - -	18944	9,027,444 – 9,027,528	+	4	89	65.03	-1.05	0.69	0.942529
13771	dm3.chrX	9,048,977 – 9,049,066	- - - - - - - -	18946	9,048,977 – 9,049,066	+	7	94	71.32	-2.20	0.44	0.960843
13771	dm3.chrX	9,048,977 – 9,049,066	- - - - - - - -	18947	9,048,977 – 9,049,066	-	7	94	71.32	-2.31	0.55	0.994677
13774	dm3.chrX	9,108,481 – 9,108,579	- - - - - - - -	18951	9,108,481 – 9,108,579	+	8	109	76.20	-2.11	0.65	0.987222
13779	dm3.chrX	9,160,700 – 9,160,802	- - - intron="intron;ID=intron_FBgn0052703:9_FBgn0052703:8;Name=CG32703-in;Parent=FBtr0302965,FBtr0302966;parent_type=mRNA" - - - -	18958	9,160,700 – 9,160,802	+	5	120	69.28	-1.39	0.65	0.916693
13780	dm3.chrX	9,178,106 – 9,178,226	- - - - - - - -	18960	9,178,106 – 9,178,226	-	5	120	90.06	-1.87	0.90	0.933035
13781	dm3.chrX	9,182,850 – 9,182,943	- - - intron="intron;ID=intron_FBgn0002576:3_FBgn0002576:4;Name=lz-in;Parent=FBtr0071320,FBtr0112814;parent_type=mRNA" - - - -	18961	9,182,850 – 9,182,943	-	6	99	73.15	-2.06	0.62	0.991443
13782	dm3.chrX	9,185,172 – 9,185,266	- - - intron="intron;ID=intron_FBgn0002576:3_FBgn0002576:4;Name=lz-in;Parent=FBtr0071320,FBtr0112814;parent_type=mRNA" - - - -	18962	9,185,172 – 9,185,266	+	7	105	63.44	-2.49	0.31	0.974300
13782	dm3.chrX	9,185,172 – 9,185,266		18963	9,185,172 – 9,185,266	-	7	105	63.44	-2.32	0.40	0.993126
13784	dm3.chrX	9,207,086 – 9,207,152	- - - - - - - -	18965	9,207,086 – 9,207,152	-	4	73	70.86	-1.97	0.54	0.901781
13788	dm3.chrX	9,225,758 – 9,225,960	- - - intron="intron;ID=intron_FBgn0085478:4_FBgn0085478:3;Name=CG34449-in;Parent=FBtr0112755;parent_type=mRNA" - - - -	18969	9,225,758 – 9,225,865	+	6	119	71.66	-1.82	0.52	0.934187
13788	dm3.chrX	9,225,758 – 9,225,960		18970	9,225,865 – 9,225,960	+	3	110	70.61	-2.80	0.55	0.991996
13790	dm3.chrX	9,240,872 – 9,240,963	- - - intron="intron;ID=intron_FBgn0085478:12_FBgn0085478:11;Name=CG34449-in;Parent=FBtr0112753,FBtr0112754,FBtr0112755;parent_type=mRNA" - - - -	18973	9,240,872 – 9,240,963	-	5	97	90.44	-2.86	0.87	0.990420
13794	dm3.chrX	9,271,440 – 9,271,495	- - - intron="intron;ID=intron_FBgn0261260:12_FBgn0261260:11;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18978	9,271,440 – 9,271,495	-	6	56	93.01	-1.85	0.97	0.964905
13804	dm3.chrX	9,312,640 – 9,312,694	- - - intron="intron;ID=intron_FBgn0261260:15_FBgn0261260:13;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18989	9,312,640 – 9,312,694	+	4	60	60.53	-2.78	0.47	0.998749
13806	dm3.chrX	9,317,828 – 9,317,883	- - - intron="intron;ID=intron_FBgn0261260:15_FBgn0261260:13;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18991	9,317,828 – 9,317,883	-	7	72	62.69	-1.50	0.50	0.971626
13810	dm3.chrX	9,326,670 – 9,326,772	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	18996	9,326,670 – 9,326,772	-	6	110	66.96	-1.71	0.44	0.946672
13811	dm3.chrX	9,330,307 – 9,330,397	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	18997	9,330,307 – 9,330,397	+	6	96	75.14	-1.54	0.68	0.940404
13813	dm3.chrX	9,333,516 – 9,333,657	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	19000	9,333,516 – 9,333,628	-	6	113	83.36	-2.56	0.62	0.964744
13813	dm3.chrX	9,333,516 – 9,333,657		19001	9,333,545 – 9,333,657	+	6	113	87.00	-3.44	0.81	0.997893
13814	dm3.chrX	9,341,966 – 9,342,062	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	19003	9,341,966 – 9,342,062	-	4	98	58.45	-1.35	0.74	0.994192
13818	dm3.chrX	9,366,360 – 9,366,503	- - - - - - - -	19008	9,366,360 – 9,366,469	+	11	117	80.87	-2.27	0.58	0.957277
				19009	9,366,360 – 9,366,469	-	11	117	80.87	-2.27	0.62	0.973166
				19010	9,366,398 – 9,366,503	+	8	115	68.80	-2.72	0.50	0.999522
				19011	9,366,398 – 9,366,503	-	8	115	68.80	-2.48	0.56	0.999504
13819	dm3.chrX	9,375,357 – 9,375,448	- - - intron="intron;ID=intron_FBgn0261260:17_FBgn0261260:16;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	19013	9,375,357 – 9,375,448	-	4	91	74.77	-2.59	0.62	0.990916
13823	dm3.chrX	9,398,390 – 9,398,453	- - - - - - - -	19018	9,398,390 – 9,398,453	+	11	64	82.26	-2.99	0.71	0.997732
13823	dm3.chrX	9,398,390 – 9,398,453	- - - - - - - -	19019	9,398,390 – 9,398,453	-	11	64	82.26	-4.14	0.72	0.999663
13827	dm3.chrX	9,432,792 – 9,432,907	- - - - - - - -	19023	9,432,792 – 9,432,907	+	3	115	89.74	-3.05	0.90	0.994680
13828	dm3.chrX	9,439,393 – 9,439,503	- - - - - - - -	19024	9,439,393 – 9,439,503	+	6	120	78.34	-2.21	0.66	0.976112
13829	dm3.chrX	9,439,629 – 9,439,723	- - - - - - - -	19025	9,439,629 – 9,439,723	+	6	95	73.62	-3.00	0.44	0.988730
13831	dm3.chrX	9,445,535 – 9,445,639	- - - - - - - -	19028	9,445,535 – 9,445,639	+	3	104	67.71	-1.70	0.68	0.921752
13833	dm3.chrX	9,452,191 – 9,452,328	FBnoncoding="ncRNA;ID=FBtr0303397;Name=CR42767-RA;Parent=FBgn0261835;Dbxref=FlyBase_Annotation_IDs:CR42767-RA;score_text=Weakly" - - - - - - -	19031	9,452,191 – 9,452,288	+	4	102	64.48	-1.26	0.62	0.947479
				19032	9,452,191 – 9,452,288	-	4	102	64.48	-1.92	0.47	0.959849
				19033	9,452,222 – 9,452,328	+	4	106	70.77	-1.86	0.58	0.949962
				19034	9,452,222 – 9,452,328	-	4	106	70.77	-2.58	0.58	0.995205
13835	dm3.chrX	9,478,679 – 9,478,792	- - - - - - - -	19036	9,478,679 – 9,478,792	+	7	118	63.37	-2.63	0.23	0.908032
13839	dm3.chrX	9,493,280 – 9,493,387	- - - - - - - -	19041	9,493,280 – 9,493,387	+	6	118	73.78	-2.20	0.67	0.993809
13843	dm3.chrX	9,529,012 – 9,529,125	- - - intron="intron;ID=intron_FBgn0028341:7_FBgn0028341:5;Name=l(1)G0232-in;Parent=FBtr0071407,FBtr0303559;parent_type=mRNA" - - - -	19046	9,529,012 – 9,529,125	+	6	113	72.55	-1.60	0.55	0.930420
13844	dm3.chrX	9,534,872 – 9,535,036	- - - - - - - -	19047	9,534,872 – 9,534,973	-	3	101	92.74	-2.10	0.97	0.977270
				19048	9,534,909 – 9,535,013	+	6	108	77.91	-2.37	0.53	0.954512
				19049	9,534,909 – 9,535,013	-	6	108	77.91	-3.60	0.68	0.999476
				19051	9,534,938 – 9,535,036	-	7	118	65.34	-2.67	0.42	0.998176
13848	dm3.chrX	9,540,875 – 9,540,967	- - - - - - - -	19060	9,540,875 – 9,540,967	+	6	93	76.39	-2.37	0.70	0.995415
13851	dm3.chrX	9,552,915 – 9,553,012	- - - - - - - -	19065	9,552,915 – 9,553,012	-	7	98	73.90	-2.66	0.54	0.997228
13855	dm3.chrX	9,578,368 – 9,578,436	- - - intron="intron;ID=intron_FBgn0015624:15_FBgn0015624:14;Name=nej-in;Parent=FBtr0302722,FBtr0071402;parent_type=mRNA" - - - -	19069	9,578,368 – 9,578,436	+	5	73	90.67	-2.33	0.81	0.926175
13855	dm3.chrX	9,578,368 – 9,578,436		19070	9,578,368 – 9,578,436	-	5	73	90.67	-3.75	0.88	0.998256
13863	dm3.chrX	9,615,431 – 9,615,565	- - - - - - - -	19078	9,615,431 – 9,615,539	+	5	108	98.70	-2.46	0.94	0.971032
13865	dm3.chrX	9,635,180 – 9,635,277	- - - intron="intron;ID=intron_FBgn0020378:3_FBgn0020378:5;Name=Sp1-in;Parent=FBtr0071381;parent_type=mRNA" - - - -	19082	9,635,180 – 9,635,277	+	5	98	85.34	-1.77	0.89	0.949170
13871	dm3.chrX	9,678,220 – 9,678,313	- - - - - - - -	19090	9,678,220 – 9,678,313	-	6	101	78.61	-2.84	0.67	0.996566
13873	dm3.chrX	9,691,917 – 9,692,035	- - - intron="intron;ID=intron_CG32698:1_CG32698:2;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19093	9,691,917 – 9,692,035	-	6	120	81.74	-2.21	0.60	0.902301
13874	dm3.chrX	9,693,013 – 9,693,069	- - - intron="intron;ID=intron_CG32698:1_CG32698:2;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19094	9,693,013 – 9,693,069	-	3	59	60.92	-1.41	0.62	0.960858
13876	dm3.chrX	9,709,301 – 9,709,398	- - - intron="intron;ID=intron_CG32698:2_CG32698:3;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19096	9,709,301 – 9,709,398	-	8	111	65.42	-2.25	0.29	0.928123
13880	dm3.chrX	9,722,787 – 9,722,857	- - - intron="intron;ID=intron_CG32698:2_CG32698:3;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19100	9,722,787 – 9,722,857	+	5	70	68.49	-0.84	0.95	0.945498
13882	dm3.chrX	9,733,169 – 9,733,280	- - - intron="intron;ID=intron_CG32698:5_CG32698:6;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19102	9,733,169 – 9,733,280	-	6	115	78.52	-1.96	0.59	0.904649
13888	dm3.chrX	9,780,118 – 9,780,217	- - - - - - - -	19108	9,780,118 – 9,780,217	-	6	106	73.41	-3.03	0.30	0.936468
13889	dm3.chrX	9,786,286 – 9,786,404	- - - - - - - -	19109	9,786,286 – 9,786,404	+	5	120	73.42	-2.28	0.47	0.951678
13891	dm3.chrX	9,799,468 – 9,799,604	- - - - - - - -	19112	9,799,468 – 9,799,604	+	5	139	47.67	-2.42	0.17	0.962170
13892	dm3.chrX	9,821,935 – 9,822,008	- - - - - - - -	19114	9,821,935 – 9,822,008	+	5	73	72.05	-1.99	0.49	0.937453
13899	dm3.chrX	9,847,739 – 9,847,802	- - - - - - - -	19122	9,847,739 – 9,847,802	-	5	72	87.08	-4.27	0.86	0.999175
13905	dm3.chrX	9,892,919 – 9,893,017	- - - intron="intron;ID=intron_CG32694:2_CG32694:3;Name=CG32694-in;Parent=FBtr0071410,FBtr0071411,FBtr0071412,FBtr0071413;parent_type=mRNA" - - - -	19129	9,892,919 – 9,893,017	-	5	107	87.73	-3.48	0.79	0.996649
13910	dm3.chrX	9,935,928 – 9,936,035	- - CDS="CDS;ID=CDS_FBgn0030171:13_936;Name=Cht6-cds;Parent=FBtr0112972;parent_type=mRNA" - - - - -	19134	9,935,928 – 9,936,035	+	3	107	99.38	-2.35	0.98	0.979618
13911	dm3.chrX	9,960,040 – 9,960,159	- - - - - - - -	19136	9,960,040 – 9,960,159	+	5	120	90.70	-1.73	0.94	0.937628
13913	dm3.chrX	9,965,663 – 9,965,763	- - - - - - - -	19138	9,965,663 – 9,965,763	+	6	110	66.71	-1.59	0.48	0.961747
13914	dm3.chrX	9,972,367 – 9,972,420	- - - intron="intron;ID=intron_CG32685:2_CG32685:3;Name=CG32685-in;Parent=FBtr0071489;parent_type=mRNA" - - - -	19139	9,972,367 – 9,972,420	+	5	59	75.49	-2.61	0.47	0.960033
13914	dm3.chrX	9,972,367 – 9,972,420		19140	9,972,367 – 9,972,420	-	5	59	75.49	-2.62	0.51	0.978578
13915	dm3.chrX	9,980,382 – 9,980,489	- - - - - - - -	19141	9,980,382 – 9,980,489	-	5	107	75.51	-2.26	0.48	0.909779
13918	dm3.chrX	9,988,744 – 9,988,839	- - - intron="intron;ID=intron_FBgn0083940:2_FBgn0083940:3;Name=CG34104-in;Parent=FBtr0110782,FBtr0110783;parent_type=mRNA" - - - -	19145	9,988,744 – 9,988,839	+	3	95	97.19	-3.65	0.98	0.998055
13919	dm3.chrX	10,001,355 – 10,001,471	- - - intron="intron;ID=intron_FBgn0083940:3_FBgn0083940:4;Name=CG34104-in;Parent=FBtr0110782,FBtr0110783;parent_type=mRNA" - - - -	19146	10,001,355 – 10,001,471	+	4	116	88.92	-2.01	0.85	0.905084
13920	dm3.chrX	10,001,925 – 10,002,033	- - - intron="intron;ID=intron_FBgn0083940:3_FBgn0083940:4;Name=CG34104-in;Parent=FBtr0110782,FBtr0110783;parent_type=mRNA" - - - -	19147	10,001,925 – 10,002,033	+	6	115	68.02	-2.30	0.40	0.984938
13920	dm3.chrX	10,001,925 – 10,002,033		19148	10,001,925 – 10,002,033	-	6	115	68.02	-2.66	0.46	0.998310
13922	dm3.chrX	10,011,370 – 10,011,555	- - - intron="intron;ID=intron_FBgn0083940:3_FBgn0083940:4;Name=CG34104-in;Parent=FBtr0110782,FBtr0110783;parent_type=mRNA" - - - -	19150	10,011,370 – 10,011,487	+	5	120	83.06	-1.08	1.01	0.928785
13922	dm3.chrX	10,011,370 – 10,011,555		19151	10,011,447 – 10,011,555	-	5	120	82.69	-2.66	0.84	0.994792
13928	dm3.chrX	10,064,974 – 10,065,026	- - - - - - - -	19160	10,064,974 – 10,065,026	+	6	52	93.72	-2.32	1.00	0.992402
13930	dm3.chrX	10,072,459 – 10,072,567	- - - - - - - -	19162	10,072,459 – 10,072,567	+	5	119	75.80	-2.87	0.46	0.973828
13931	dm3.chrX	10,076,157 – 10,076,249	- - - - - - - -	19165	10,076,157 – 10,076,249	-	6	108	65.59	-2.15	0.51	0.995419
13932	dm3.chrX	10,077,128 – 10,077,227	- - - - - - - -	19166	10,077,128 – 10,077,227	-	6	119	74.45	-2.10	0.51	0.905025
13937	dm3.chrX	10,102,144 – 10,102,237	- - - - - - - -	19171	10,102,144 – 10,102,237	+	9	99	61.73	-1.45	0.36	0.914861
13940	dm3.chrX	10,140,085 – 10,140,245	- - - - - - - -	19174	10,140,085 – 10,140,245	+	4	178	69.25	-2.62	0.44	0.975678
13941	dm3.chrX	10,146,859 – 10,146,993	- - - - - - - -	19176	10,146,859 – 10,146,954	-	4	105	78.80	-2.01	0.90	0.983875
13943	dm3.chrX	10,150,791 – 10,150,933	- - - - - - - -	19180	10,150,791 – 10,150,933	-	5	157	78.84	-2.86	0.59	0.989014
13944	dm3.chrX	10,176,351 – 10,176,478	- - - intron="intron;ID=intron_FBgn0259170:7_FBgn0259170:6;Name=alpha-Man-I-in;Parent=FBtr0300512;parent_type=mRNA" - - - -	19183	10,176,378 – 10,176,478	-	7	106	81.32	-1.75	0.80	0.956084
13948	dm3.chrX	10,206,697 – 10,206,790	- - - - - - - -	19187	10,206,697 – 10,206,790	+	7	115	66.56	-2.86	0.32	0.978895
13950	dm3.chrX	10,228,879 – 10,229,000	- - - - - - - -	19189	10,228,879 – 10,228,975	+	3	101	87.46	-3.02	0.92	0.996178
13950	dm3.chrX	10,228,879 – 10,229,000	- - - - - - - -	19192	10,228,897 – 10,229,000	-	5	105	80.15	-1.99	0.77	0.967010
13960	dm3.chrX	10,274,410 – 10,274,588	- - CDS="CDS;ID=CDS_CG32681:1_900;Name=CG32681-cds;Parent=FBtr0071466;parent_type=mRNA" - - - - -	19202	10,274,410 – 10,274,588	+	12	188	70.42	-2.77	0.23	0.906432
13960	dm3.chrX	10,274,410 – 10,274,588		19203	10,274,410 – 10,274,588	-	12	188	70.42	-3.01	0.28	0.986256
13961	dm3.chrX	10,279,896 – 10,280,102	- - - - - - - -	19205	10,280,015 – 10,280,102	-	5	87	97.24	-1.93	1.00	0.971530
13969	dm3.chrX	10,322,730 – 10,322,792	- - - intron="intron;ID=intron_CG32683:2_CG32683:3;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19215	10,322,730 – 10,322,792	+	5	67	55.21	-1.60	0.37	0.949090
13971	dm3.chrX	10,336,309 – 10,336,417	- - - intron="intron;ID=intron_CG32683:2_CG32683:3;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19218	10,336,309 – 10,336,417	+	5	110	89.28	-3.20	0.58	0.934091
13976	dm3.chrX	10,342,943 – 10,343,050	- - - intron="intron;ID=intron_CG32683:2_CG32683:3;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19224	10,342,943 – 10,343,050	-	4	109	80.00	-2.83	0.69	0.990188
13978	dm3.chrX	10,350,493 – 10,350,590	- - - - - - - -	19226	10,350,493 – 10,350,590	-	3	97	81.63	-2.34	0.74	0.940081
13980	dm3.chrX	10,381,032 – 10,381,143	- - - - - - - -	19228	10,381,032 – 10,381,143	-	5	112	84.80	-2.67	0.74	0.982114
13985	dm3.chrX	10,413,028 – 10,413,153	- - - intron="intron;ID=intron_FBgn0085443:11_FBgn0085443:9;Name=spri-in;Parent=FBtr0112688,FBtr0112689;parent_type=mRNA" - - - -	19233	10,413,028 – 10,413,153	+	6	136	73.11	-2.14	0.49	0.964597
13985	dm3.chrX	10,413,028 – 10,413,153		19234	10,413,028 – 10,413,153	-	6	136	73.11	-2.71	0.45	0.990346
13987	dm3.chrX	10,431,129 – 10,431,274	- - - intron="intron;ID=intron_FBgn0085443:13_FBgn0085443:12;Name=spri-in;Parent=FBtr0112689;parent_type=mRNA" - - - -	19237	10,431,154 – 10,431,274	-	5	120	85.13	-1.95	0.84	0.942729
13988	dm3.chrX	10,431,446 – 10,431,578	- - - intron="intron;ID=intron_FBgn0085443:13_FBgn0085443:12;Name=spri-in;Parent=FBtr0112689;parent_type=mRNA" - - - -	19238	10,431,446 – 10,431,565	-	4	120	75.56	-2.54	0.63	0.988430
13989	dm3.chrX	10,432,522 – 10,432,711	- - - intron="intron;ID=intron_FBgn0085443:13_FBgn0085443:12;Name=spri-in;Parent=FBtr0112689;parent_type=mRNA" - - - -	19241	10,432,522 – 10,432,632	+	5	116	86.54	-2.83	0.73	0.980173
13991	dm3.chrX	10,447,318 – 10,447,459	- - - - - - - -	19244	10,447,318 – 10,447,424	+	6	118	68.53	-2.17	0.44	0.971403
13993	dm3.chrX	10,457,082 – 10,457,225	- - - - - - - -	19248	10,457,082 – 10,457,188	-	6	113	83.19	-2.23	0.77	0.972804
13996	dm3.chrX	10,473,752 – 10,473,843	- - - intron="intron;ID=intron_FBgn0085443:17_FBgn0085443:16;Name=spri-in;Parent=FBtr0112688;parent_type=mRNA" - - - -	19253	10,473,752 – 10,473,843	+	5	110	83.98	-1.78	0.87	0.936074
13999	dm3.chrX	10,495,795 – 10,495,885	- - - intron="intron;ID=intron_CG1628:1_CG1628:2;Name=CG1628-in;Parent=FBtr0071510;parent_type=mRNA" - - - -	19256	10,495,795 – 10,495,885	-	5	95	82.18	-2.70	0.75	0.990372
14002	dm3.chrX	10,535,464 – 10,535,599	- - - intron="intron;ID=intron_FBgn0052677:2_FBgn0052677:3;Name=X11Lbeta-in;Parent=FBtr0071493;parent_type=mRNA" - - - -	19261	10,535,502 – 10,535,594	+	7	111	57.95	-0.86	0.48	0.933528
14002	dm3.chrX	10,535,464 – 10,535,599		19262	10,535,502 – 10,535,594	-	7	111	57.95	-1.10	0.42	0.915552
14003	dm3.chrX	10,541,327 – 10,541,381	- - - intron="intron;ID=intron_FBgn0052677:2_FBgn0052677:3;Name=X11Lbeta-in;Parent=FBtr0071493;parent_type=mRNA" - - - -	19265	10,541,327 – 10,541,381	+	7	58	73.75	-1.60	0.67	0.978256
14006	dm3.chrX	10,567,429 – 10,567,489	- - - - - - - -	19268	10,567,429 – 10,567,489	-	5	67	63.28	-1.00	0.65	0.954994
14007	dm3.chrX	10,568,282 – 10,568,373	- - - - - - - -	19269	10,568,282 – 10,568,373	+	7	110	63.34	-2.33	0.33	0.973434
14007	dm3.chrX	10,568,282 – 10,568,373	- - - - - - - -	19270	10,568,282 – 10,568,373	-	7	110	63.34	-2.04	0.40	0.983234
14008	dm3.chrX	10,575,837 – 10,575,954	- - - intron="intron;ID=intron_FBgn0052677:3_FBgn0052677:4;Name=X11Lbeta-in;Parent=FBtr0071493;parent_type=mRNA" - - - -	19271	10,575,837 – 10,575,954	-	5	120	78.16	-2.12	0.57	0.906551
14011	dm3.chrX	10,599,838 – 10,599,901	- - CDS="CDS;ID=CDS_FBgn0052677:10_936;Name=X11Lbeta-cds;Parent=FBtr0071493;parent_type=mRNA" - - - - -	19274	10,599,838 – 10,599,901	+	5	75	65.95	-1.54	0.53	0.948478
14012	dm3.chrX	10,612,175 – 10,612,336	- - - intron="intron;ID=intron_CG32676:2_CG32676:3;Name=CG32676-in;Parent=FBtr0071503;parent_type=mRNA" - - - -	19275	10,612,175 – 10,612,336	-	4	161	80.62	-2.40	0.65	0.940419
14016	dm3.chrX	10,641,230 – 10,641,297	- - - intron="intron;ID=intron_FBgn0003204:7_FBgn0003204:8;Name=ras-in;Parent=FBtr0071494,FBtr0071495,FBtr0071496;parent_type=mRNA" - - - -	19279	10,641,230 – 10,641,297	-	5	69	70.01	-2.26	0.49	0.981354
14017	dm3.chrX	10,642,390 – 10,642,539	- - - - - - - -	19280	10,642,390 – 10,642,506	-	5	119	87.20	-2.65	0.80	0.982770
14019	dm3.chrX	10,646,422 – 10,646,474	- - - - - - - -	19284	10,646,422 – 10,646,474	-	5	52	100.00	-1.58	1.00	0.907217
14023	dm3.chrX	10,691,231 – 10,691,324	- - CDS="CDS;ID=CDS_FBgn0030235:3_920;Name=Imp-cds;Parent=FBtr0073419;parent_type=mRNA" - - - - -	19289	10,691,231 – 10,691,324	-	7	99	63.16	-1.39	0.53	0.989158
14033	dm3.chrX	10,719,194 – 10,719,294	- - - - - - - -	19301	10,719,194 – 10,719,294	+	5	105	71.57	-2.08	0.56	0.976408
14034	dm3.chrX	10,719,327 – 10,719,447	- - - - - - - -	19303	10,719,356 – 10,719,447	+	5	105	74.24	-2.43	0.54	0.979576
14035	dm3.chrX	10,731,957 – 10,732,019	- - - intron="intron;ID=intron_FBgn0003321:8_FBgn0003321:7;Name=sbr-in;Parent=FBtr0073411;parent_type=mRNA" - - - -	19304	10,731,957 – 10,732,019	+	5	64	68.85	-1.69	0.50	0.924434
14038	dm3.chrX	10,752,461 – 10,752,584	- - CDS="CDS;ID=CDS_CG2186:3_893;Name=CG2186-cds;Parent=FBtr0073381;parent_type=mRNA" - - - - -	19307	10,752,461 – 10,752,584	-	7	140	72.38	-1.88	0.46	0.901269
14041	dm3.chrX	10,760,181 – 10,760,286	- - - - - - - -	19310	10,760,181 – 10,760,286	+	7	111	90.05	-2.90	0.64	0.903461
14047	dm3.chrX	10,810,845 – 10,810,950	- - CDS="CDS;ID=CDS_FBgn0030249:7_950;Name=CG11203-cds;Parent=FBtr0112978;parent_type=mRNA" - - - - -	19316	10,810,845 – 10,810,950	+	13	109	74.50	-1.49	0.54	0.939769
14049	dm3.chrX	10,821,595 – 10,821,694	- - CDS="CDS;ID=CDS_CG2145:1_896;Name=CG2145-cds;Parent=FBtr0073387;parent_type=mRNA" - - - - -	19318	10,821,595 – 10,821,694	+	10	109	68.31	-1.37	0.51	0.974093
14053	dm3.chrX	10,852,092 – 10,852,279	- - - intron="intron;ID=intron_FBgn0030252:3_FBgn0030252:4;Name=Myo10A-in;Parent=FBtr0273266,FBtr0273267;parent_type=mRNA" - - - -	19324	10,852,188 – 10,852,279	-	5	105	80.53	-2.18	0.83	0.981055
14054	dm3.chrX	10,854,668 – 10,854,767	- - CDS="CDS;ID=CDS_FBgn0030252:4_941;Name=Myo10A-cds;Parent=FBtr0273266,FBtr0273267;parent_type=mRNA" - - - - -	19325	10,854,668 – 10,854,767	+	12	111	73.10	-1.59	0.46	0.912488
14058	dm3.chrX	10,881,475 – 10,881,596	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19331	10,881,475 – 10,881,589	+	6	120	82.99	-2.12	0.70	0.930480
14060	dm3.chrX	10,904,225 – 10,904,317	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19336	10,904,225 – 10,904,317	+	10	103	67.52	-1.13	0.53	0.958887
14061	dm3.chrX	10,904,442 – 10,904,493	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19338	10,904,442 – 10,904,493	-	3	51	97.39	-2.99	0.96	0.993821
14063	dm3.chrX	10,915,486 – 10,915,594	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19341	10,915,486 – 10,915,594	-	5	108	97.59	-1.99	0.98	0.962614
14067	dm3.chrX	10,929,559 – 10,929,625	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19346	10,929,559 – 10,929,625	+	9	68	81.69	-1.68	0.72	0.904942
14068	dm3.chrX	10,930,166 – 10,930,217	- - CDS="CDS;ID=CDS_FBgn0259241:5_961;Name=CG42339-cds;Parent=FBtr0299861;parent_type=mRNA" intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19347	10,930,166 – 10,930,217	+	5	51	95.69	-1.88	1.01	0.977640
14070	dm3.chrX	10,937,336 – 10,937,430	- - - - - - - -	19350	10,937,336 – 10,937,430	-	5	96	71.40	-1.53	0.61	0.958619
14071	dm3.chrX	10,939,737 – 10,939,886	- - - intron="intron;ID=intron_CG11160:1_CG11160:2;Name=CG11160-in;Parent=FBtr0073390,FBtr0073391;parent_type=mRNA" - - - -	19351	10,939,737 – 10,939,886	+	7	165	80.92	-3.18	0.59	0.995884
14072	dm3.chrX	10,942,020 – 10,942,127	- - CDS="CDS;ID=CDS_CG11160:2_911;Name=CG11160-cds;Parent=FBtr0073390,FBtr0073391;parent_type=mRNA" - - - - -	19353	10,942,020 – 10,942,127	+	14	110	72.49	-3.22	0.33	0.997843
14072	dm3.chrX	10,942,020 – 10,942,127		19354	10,942,020 – 10,942,127	-	14	110	72.49	-2.49	0.38	0.992137
14086	dm3.chrX	11,054,004 – 11,054,096	- - - - - - - -	19371	11,054,004 – 11,054,096	+	6	103	79.91	-2.23	0.72	0.979962
14087	dm3.chrX	11,055,307 – 11,055,443	- - - - - - - -	19372	11,055,307 – 11,055,403	+	13	101	66.65	-1.65	0.65	0.999198
14087	dm3.chrX	11,055,307 – 11,055,443	- - - - - - - -	19373	11,055,307 – 11,055,403	-	13	101	66.65	-2.07	0.33	0.981068
14089	dm3.chrX	11,067,277 – 11,067,362	- - - - - - - -	19378	11,067,277 – 11,067,362	-	6	85	81.58	-2.27	0.87	0.991430
14090	dm3.chrX	11,076,378 – 11,076,474	- - - - - - - -	19379	11,076,378 – 11,076,474	+	12	110	78.12	-2.85	0.46	0.986972
14093	dm3.chrX	11,104,815 – 11,104,909	- - - - - - - -	19383	11,104,815 – 11,104,909	+	9	114	61.86	-1.12	0.52	0.972125
14095	dm3.chrX	11,125,623 – 11,125,759	- - - intron="intron;ID=intron_FBgn0261569:5_FBgn0261569:4;Name=CG42683-in;Parent=FBtr0302838,FBtr0302839,FBtr0303042;parent_type=mRNA" - - - -	19386	11,125,623 – 11,125,759	+	6	145	76.44	-2.32	0.59	0.986251
14098	dm3.chrX	11,139,635 – 11,139,738	- - - intron="intron;ID=intron_FBgn0261569:7_FBgn0261569:6;Name=CG42683-in;Parent=FBtr0303042;parent_type=mRNA" - - - -	19389	11,139,635 – 11,139,738	-	6	118	56.06	-2.83	0.35	0.999260
14099	dm3.chrX	11,139,927 – 11,140,020	- - - intron="intron;ID=intron_FBgn0261569:7_FBgn0261569:6;Name=CG42683-in;Parent=FBtr0303042;parent_type=mRNA" - - - -	19391	11,139,927 – 11,140,020	-	6	115	64.29	-2.96	0.49	0.999553
14100	dm3.chrX	11,146,363 – 11,146,464	- - - - - - - -	19392	11,146,363 – 11,146,464	+	5	101	90.64	-2.03	0.87	0.920976
14102	dm3.chrX	11,158,273 – 11,158,368	- - - - - - - -	19396	11,158,273 – 11,158,368	+	7	117	63.29	-1.06	0.58	0.934587
14104	dm3.chrX	11,160,733 – 11,160,921	- - - - - - - -	19400	11,160,733 – 11,160,847	-	5	117	66.10	-2.11	0.47	0.974332
14106	dm3.chrX	11,180,333 – 11,180,481	- - - - - - - -	19403	11,180,333 – 11,180,442	+	4	115	84.12	-3.48	0.80	0.997870
				19404	11,180,333 – 11,180,442	-	4	115	84.12	-3.92	0.83	0.998971
				19405	11,180,368 – 11,180,481	+	6	120	64.68	-3.24	0.36	0.999071
				19406	11,180,368 – 11,180,481	-	6	120	64.68	-3.29	0.53	0.999901
14108	dm3.chrX	11,183,703 – 11,183,795	- - - - - - - -	19408	11,183,703 – 11,183,795	+	5	96	87.21	-2.35	0.89	0.983057
14110	dm3.chrX	11,242,296 – 11,242,398	- - CDS="CDS;ID=CDS_CG11756:1_918;Name=CG11756-cds;Parent=FBtr0073450;parent_type=mRNA" - - - - -	19410	11,242,296 – 11,242,398	-	5	120	74.47	-2.17	0.55	0.944878
14113	dm3.chrX	11,274,039 – 11,274,129	- - - intron="intron;ID=intron_FBgn0001624:8_FBgn0001624:9;Name=dlg1-in;Parent=FBtr0073483,FBtr0073490,FBtr0073488,FBtr0073492,FBtr0073484,FBtr0073491,FBtr0112813,FBtr0301288,FBtr0302114;parent_type=mRNA" - - - -	19413	11,274,039 – 11,274,129	+	5	90	84.13	-3.80	0.72	0.998664
14113	dm3.chrX	11,274,039 – 11,274,129		19414	11,274,039 – 11,274,129	-	5	90	84.13	-3.22	0.67	0.993487
14114	dm3.chrX	11,274,440 – 11,274,550	- - - intron="intron;ID=intron_FBgn0001624:8_FBgn0001624:9;Name=dlg1-in;Parent=FBtr0073483,FBtr0073490,FBtr0073488,FBtr0073492,FBtr0073484,FBtr0073491,FBtr0112813,FBtr0301288,FBtr0302114;parent_type=mRNA" - - - -	19415	11,274,440 – 11,274,535	+	5	112	82.96	-2.35	0.79	0.975455
14114	dm3.chrX	11,274,440 – 11,274,550		19416	11,274,448 – 11,274,550	+	5	112	84.20	-2.43	0.86	0.988051
14116	dm3.chrX	11,279,719 – 11,279,871	- - - intron="intron;ID=intron_FBgn0001624:10_FBgn0001624:12;Name=dlg1-in;Parent=FBtr0073488,FBtr0073484;parent_type=mRNA" - - - -	19419	11,279,719 – 11,279,838	+	4	119	95.80	-1.78	0.97	0.936733
14116	dm3.chrX	11,279,719 – 11,279,871		19420	11,279,759 – 11,279,871	+	4	112	92.55	-2.26	0.89	0.952187
14119	dm3.chrX	11,290,638 – 11,290,784	- - - intron="intron;ID=intron_FBgn0001624:23_FBgn0001624:24;Name=dlg1-in;Parent=FBtr0073489,FBtr0073487,FBtr0073485,FBtr0073486,FBtr0301289;parent_type=mRNA" - - - -	19423	11,290,638 – 11,290,784	+	6	163	75.40	-2.41	0.67	0.994082
14120	dm3.chrX	11,290,938 – 11,291,088	- - - intron="intron;ID=intron_FBgn0001624:23_FBgn0001624:24;Name=dlg1-in;Parent=FBtr0073489,FBtr0073487,FBtr0073485,FBtr0073486,FBtr0301289;parent_type=mRNA" - - - -	19424	11,290,938 – 11,291,050	+	6	112	72.81	-3.78	0.40	0.999044
14120	dm3.chrX	11,290,938 – 11,291,088		19425	11,290,970 – 11,291,088	+	5	120	83.38	-2.65	0.74	0.981774
14122	dm3.chrX	11,304,955 – 11,305,126	- - CDS="CDS;ID=CDS_FBgn0030296:3_973;Name=CG15196-cds;Parent=FBtr0300849;parent_type=mRNA" - - - - -	19428	11,304,995 – 11,305,097	+	6	117	73.28	-1.83	0.64	0.967501
14122	dm3.chrX	11,304,955 – 11,305,126		19429	11,304,995 – 11,305,097	-	6	117	73.28	-1.81	0.62	0.957056
14123	dm3.chrX	11,317,136 – 11,317,233	- - - intron="intron;ID=intron_CG1743:1_CG1743:2;Name=Gs2-in;Parent=FBtr0073494;parent_type=mRNA" - - - -	19431	11,317,136 – 11,317,233	+	3	97	78.80	-2.84	0.92	0.996999
14125	dm3.chrX	11,344,538 – 11,344,638	- - - - - - - -	19435	11,344,538 – 11,344,638	+	4	105	80.33	-3.80	0.65	0.998522
14129	dm3.chrX	11,350,948 – 11,350,999	- - CDS="CDS;ID=CDS_CG1745:3_938;Name=HP5-cds;Parent=FBtr0073499;parent_type=mRNA" - - - - -	19441	11,350,948 – 11,350,999	-	3	51	92.81	-2.67	0.85	0.966868
14130	dm3.chrX	11,358,219 – 11,358,269	- - - intron="intron;ID=intron_FBgn0262685:1_FBgn0262685:2;Name=CG43155-in;Parent=FBtr0305607;parent_type=mRNA" - - - -	19442	11,358,219 – 11,358,269	+	6	57	74.72	-1.51	0.98	0.979043
14131	dm3.chrX	11,359,023 – 11,359,091	- - - intron="intron;ID=intron_FBgn0262685:1_FBgn0262685:2;Name=CG43155-in;Parent=FBtr0305607;parent_type=mRNA" - - - -	19443	11,359,023 – 11,359,091	+	4	68	97.06	-2.40	0.95	0.977401
14132	dm3.chrX	11,386,995 – 11,387,210	- - - - - - - -	19445	11,387,035 – 11,387,155	+	5	120	81.57	-2.27	0.68	0.944600
14132	dm3.chrX	11,386,995 – 11,387,210	- - - - - - - -	19446	11,387,035 – 11,387,155	-	5	120	81.57	-2.15	0.68	0.922111
14133	dm3.chrX	11,391,110 – 11,391,163	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19448	11,391,110 – 11,391,163	+	5	53	95.85	-1.33	1.02	0.925584
14135	dm3.chrX	11,398,374 – 11,398,484	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19450	11,398,374 – 11,398,484	+	3	116	83.92	-2.54	0.78	0.967902
14135	dm3.chrX	11,398,374 – 11,398,484		19451	11,398,374 – 11,398,484	-	3	116	83.92	-2.64	0.70	0.939739
14140	dm3.chrX	11,420,456 – 11,420,519	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19457	11,420,456 – 11,420,519	+	3	63	81.28	-2.20	0.74	0.924296
14141	dm3.chrX	11,421,716 – 11,421,815	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19458	11,421,716 – 11,421,815	+	7	112	73.05	-3.34	0.33	0.981672
14141	dm3.chrX	11,421,716 – 11,421,815		19459	11,421,716 – 11,421,815	-	7	112	73.05	-3.20	0.32	0.964974
14143	dm3.chrX	11,438,478 – 11,438,636	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19461	11,438,478 – 11,438,586	+	3	115	78.59	-1.46	0.92	0.931299
14143	dm3.chrX	11,438,478 – 11,438,636		19462	11,438,586 – 11,438,636	+	5	50	99.20	-2.24	1.00	0.982812
14145	dm3.chrX	11,443,875 – 11,443,990	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19465	11,443,875 – 11,443,985	+	5	119	62.43	-1.95	0.38	0.931959
14146	dm3.chrX	11,454,839 – 11,454,974	- - - - - - - -	19470	11,454,839 – 11,454,955	-	6	121	68.41	-1.97	0.55	0.992376
14151	dm3.chrX	11,474,049 – 11,474,253	FBnoncoding="ncRNA;ID=FBtr0073515;Name=roX2-RB;Parent=FBgn0019660;Dbxref=FlyBase_Annotation_IDs:CR32665-RB,REFSEQ:NR_002104;score_text=Weakly" - - - - "Noncode_2.0=n5303_u4666_U85981_roX\|2e-112" "unique_Noncode_2.0=u4666_roX\|1e-112" -	19476	11,474,049 – 11,474,154	+	9	115	73.06	-3.29	0.50	0.999247
14152	dm3.chrX	11,494,958 – 11,495,072	- - - intron="intron;ID=intron_FBgn0030318:1_FBgn0030318:2;Name=rho-4-in;Parent=FBtr0073519;parent_type=mRNA" - - - -	19480	11,494,958 – 11,495,072	-	5	118	74.57	-2.27	0.53	0.948750
14153	dm3.chrX	11,496,154 – 11,496,251	- - - intron="intron;ID=intron_FBgn0030318:1_FBgn0030318:2;Name=rho-4-in;Parent=FBtr0073519;parent_type=mRNA" - - - -	19481	11,496,154 – 11,496,251	+	4	113	75.31	-2.45	0.55	0.957148
14156	dm3.chrX	11,511,797 – 11,511,914	- - CDS="CDS;ID=CDS_FBgn0002723:1_1005;Name=Met-cds;Parent=FBtr0073521;parent_type=mRNA" - - - - -	19484	11,511,797 – 11,511,914	-	9	118	68.23	-2.21	0.28	0.911201
14157	dm3.chrX	11,520,138 – 11,520,244	- - - intron="intron;ID=intron_FBgn0004370:5_FBgn0004370:6;Name=Ptp10D-in;Parent=FBtr0073522,FBtr0273235;parent_type=mRNA" - - - -	19486	11,520,138 – 11,520,244	-	5	107	93.40	-3.22	0.82	0.988941
14164	dm3.chrX	11,560,301 – 11,560,459	- - - intron="intron;ID=intron_FBgn0004370:6_FBgn0004370:7;Name=Ptp10D-in;Parent=FBtr0073525,FBtr0073522,FBtr0073524,FBtr0273235;parent_type=mRNA" - - - -	19495	11,560,335 – 11,560,443	+	6	116	70.59	-1.83	0.58	0.975455
				19496	11,560,335 – 11,560,443	-	6	116	70.59	-2.86	0.53	0.998244
				19497	11,560,368 – 11,560,459	+	5	100	76.11	-1.83	0.73	0.966289
14166	dm3.chrX	11,567,977 – 11,568,082	- - - intron="intron;ID=intron_FBgn0004370:15_FBgn0004370:17;Name=Ptp10D-in;Parent=FBtr0073525,FBtr0073524;parent_type=mRNA" - - - -	19500	11,567,977 – 11,568,082	+	12	119	72.55	-4.71	0.36	0.999867
14166	dm3.chrX	11,567,977 – 11,568,082		19501	11,567,977 – 11,568,082	-	12	119	72.55	-3.14	0.26	0.967274
14167	dm3.chrX	11,572,943 – 11,573,037	- - - - - - - -	19503	11,572,943 – 11,573,037	-	6	113	70.50	-1.76	0.60	0.970329
14169	dm3.chrX	11,582,222 – 11,582,277	- - - intron="intron;ID=intron_CG1822:4_CG1822:5;Name=bif-in;Parent=FBtr0073526,FBtr0073527;parent_type=mRNA" - - - -	19505	11,582,222 – 11,582,277	-	5	55	85.56	-2.71	0.61	0.925524
14170	dm3.chrX	11,583,336 – 11,583,483	- - CDS="CDS;ID=CDS_CG1822:5_897;Name=bif-cds;Parent=FBtr0073526,FBtr0073527;parent_type=mRNA" - - - - -	19507	11,583,336 – 11,583,452	-	6	117	84.18	-1.99	0.75	0.925104
14170	dm3.chrX	11,583,336 – 11,583,483		19509	11,583,376 – 11,583,483	-	6	110	83.83	-2.21	0.71	0.943632
14171	dm3.chrX	11,591,843 – 11,591,934	- - - intron="intron;ID=intron_FBgn0011754:9_FBgn0011754:10;Name=PhKgamma-in;Parent=FBtr0090002,FBtr0301500,FBtr0301501;parent_type=mRNA" - - - -	19510	11,591,843 – 11,591,934	-	5	91	88.46	-3.10	0.79	0.992417
14172	dm3.chrX	11,596,444 – 11,596,584	- - - intron="intron;ID=intron_FBgn0011754:13_FBgn0011754:14;Name=PhKgamma-in;Parent=FBtr0301500,FBtr0301501;parent_type=mRNA" - - - -	19511	11,596,444 – 11,596,551	+	11	118	92.06	-3.30	0.67	0.973880
14173	dm3.chrX	11,608,916 – 11,609,054	- - - intron="intron;ID=intron_FBgn0030328:12_FBgn0030328:10;Name=Amun-in;Parent=FBtr0303338;parent_type=mRNA" - - - -	19515	11,608,950 – 11,609,054	-	5	106	94.27	-2.39	0.88	0.953701
14178	dm3.chrX	11,657,182 – 11,657,340	- - CDS="CDS;ID=CDS_CG9369:3_905;Name=m-cds;Parent=FBtr0073555;parent_type=mRNA" - - - - -	19520	11,657,182 – 11,657,340	+	11	175	73.93	-1.43	0.66	0.973976
14179	dm3.chrX	11,659,542 – 11,659,665	- - - - - - - -	19522	11,659,542 – 11,659,665	+	3	149	61.71	-1.26	0.69	0.947080
14180	dm3.chrX	11,659,906 – 11,660,035	- - - - - - - -	19525	11,659,941 – 11,660,035	+	7	98	70.77	-1.53	0.65	0.979064
14182	dm3.chrX	11,686,487 – 11,686,600	- - - - - - - -	19528	11,686,487 – 11,686,600	+	5	113	84.42	-1.95	0.80	0.933705
14188	dm3.chrX	11,771,222 – 11,771,358	- - - - - - - -	19535	11,771,222 – 11,771,358	+	4	136	79.80	-2.53	0.70	0.980224
14188	dm3.chrX	11,771,222 – 11,771,358	- - - - - - - -	19536	11,771,222 – 11,771,358	-	4	136	79.80	-4.08	0.73	0.999404
14191	dm3.chrX	11,781,891 – 11,782,057	- - - - "Rfam_10.0=RF00031;SECIS;AAGH01001964.1/2115-2182\|2.7e-18" - - -	19539	11,781,891 – 11,781,995	+	12	122	50.59	-2.13	0.43	0.999598
				19540	11,781,891 – 11,781,995	-	12	122	50.59	-2.02	0.32	0.995759
				19541	11,781,995 – 11,782,057	+	10	71	69.47	-2.44	0.81	0.999174
14192	dm3.chrX	11,814,219 – 11,814,390	FBnoncoding="ncRNA;ID=FBtr0073592;Name=CR32660-RA;Parent=FBgn0052660;Dbxref=FlyBase_Annotation_IDs:CR32660-RA,REFSEQ:NR_002107;score_text=Weakly" - - - - - - -	19543	11,814,219 – 11,814,390	-	5	179	68.98	-2.31	0.56	0.995714
14196	dm3.chrX	11,833,765 – 11,833,897	- - CDS="CDS;ID=CDS_FBgn0005563:5_904;Name=cac-cds;Parent=FBtr0073585;parent_type=mRNA" - - - - -	19547	11,833,765 – 11,833,874	+	14	115	84.09	-2.20	0.60	0.925125
14196	dm3.chrX	11,833,765 – 11,833,897		19548	11,833,765 – 11,833,874	-	14	115	84.09	-2.01	0.65	0.920873
14198	dm3.chrX	11,864,590 – 11,864,711	- - CDS="CDS;ID=CDS_FBgn0005563:22_904;Name=cac-cds;Parent=FBtr0073585;parent_type=mRNA" - - - - -	19552	11,864,590 – 11,864,706	+	15	120	84.89	-2.75	0.65	0.988108
14198	dm3.chrX	11,864,590 – 11,864,711		19553	11,864,590 – 11,864,706	-	15	120	84.89	-2.79	0.71	0.993549
14200	dm3.chrX	11,896,808 – 11,896,870	- - - intron="intron;ID=intron_FBgn0001083:15_FBgn0001083:14;Name=fw-in;Parent=FBtr0073580;parent_type=mRNA" - - - -	19556	11,896,808 – 11,896,870	+	7	69	72.40	-1.85	0.51	0.938475
14205	dm3.chrX	11,933,127 – 11,933,196	- - - - - - - -	19561	11,933,127 – 11,933,196	+	10	69	92.01	-2.58	0.89	0.988380
14206	dm3.chrX	11,935,258 – 11,935,385	- - - - - - - -	19562	11,935,258 – 11,935,385	+	11	145	84.70	-2.87	0.53	0.948268
14207	dm3.chrX	11,935,437 – 11,935,498	- - - - - - - -	19563	11,935,437 – 11,935,498	-	3	61	81.71	-1.84	0.91	0.958828
14208	dm3.chrX	11,935,831 – 11,935,904	- - - - - - - -	19564	11,935,831 – 11,935,904	+	6	88	64.44	-3.01	0.34	0.996403
14209	dm3.chrX	11,939,894 – 11,939,985	- - - - - - - -	19565	11,939,894 – 11,939,985	+	5	100	90.59	-2.15	0.85	0.925198
14214	dm3.chrX	11,964,812 – 11,964,907	- - CDS="CDS;ID=CDS_FBgn0085352:2_1005;Name=CG34323-cds;Parent=FBtr0112525;parent_type=mRNA" - - - - -	19572	11,964,812 – 11,964,907	-	6	114	62.96	-1.11	0.56	0.958306
14215	dm3.chrX	11,968,750 – 11,968,849	- - - - - - - -	19573	11,968,750 – 11,968,849	+	9	109	67.70	-1.54	0.66	0.996402
14217	dm3.chrX	11,981,375 – 11,981,453	FBnoncoding="ncRNA;ID=FBtr0073625;Name=CR32657-RA;Parent=FBgn0052657;Dbxref=FlyBase_Annotation_IDs:CR32657-RA,REFSEQ:NR_002108;score_text=Weakly" - - - - - - -	19575	11,981,375 – 11,981,453	+	5	87	70.65	-3.29	0.63	0.999677
14217	dm3.chrX	11,981,375 – 11,981,453		19576	11,981,375 – 11,981,453	-	5	87	70.65	-2.85	0.67	0.999304
14221	dm3.chrX	12,000,568 – 12,000,698	- - - - - - - -	19581	12,000,568 – 12,000,698	-	12	147	86.05	-2.84	0.72	0.990708
14222	dm3.chrX	12,014,656 – 12,014,710	- - - - - - - -	19582	12,014,656 – 12,014,710	+	7	54	81.66	-2.20	0.66	0.932246
14222	dm3.chrX	12,014,656 – 12,014,710	- - - - - - - -	19583	12,014,656 – 12,014,710	-	7	54	81.66	-1.89	0.89	0.978454
14227	dm3.chrX	12,031,296 – 12,031,391	- - - - - - - -	19589	12,031,296 – 12,031,391	-	6	95	82.27	-2.66	0.61	0.976843
14228	dm3.chrX	12,049,842 – 12,049,962	- - - - - - - -	19590	12,049,842 – 12,049,962	+	11	139	83.58	-3.70	0.50	0.995249
14228	dm3.chrX	12,049,842 – 12,049,962	- - - - - - - -	19591	12,049,842 – 12,049,962	-	11	139	83.58	-2.73	0.56	0.954976
14229	dm3.chrX	12,053,509 – 12,053,606	- - - - - - - -	19593	12,053,509 – 12,053,606	-	7	110	67.95	-2.16	0.37	0.942401
14230	dm3.chrX	12,078,402 – 12,078,491	- - - - - - - -	19594	12,078,402 – 12,078,491	-	6	91	71.69	-1.72	0.60	0.984922
14231	dm3.chrX	12,079,259 – 12,079,325	- - - - - - - -	19596	12,079,259 – 12,079,325	-	4	69	94.07	-2.16	0.96	0.975886
14233	dm3.chrX	12,085,219 – 12,085,272	- - - - - - - -	19598	12,085,219 – 12,085,272	+	6	63	81.78	-2.78	0.83	0.995613
14233	dm3.chrX	12,085,219 – 12,085,272	- - - - - - - -	19599	12,085,219 – 12,085,272	-	6	63	81.78	-1.88	0.77	0.921947
14234	dm3.chrX	12,086,089 – 12,086,186	- - - - - - - -	19600	12,086,089 – 12,086,186	+	4	101	79.09	-2.32	0.62	0.923205
14236	dm3.chrX	12,095,194 – 12,095,249	- - - intron="intron;ID=intron_FBgn0259240:3_FBgn0259240:4;Name=Ten-a-in;Parent=FBtr0300203;parent_type=mRNA" - - - -	19602	12,095,194 – 12,095,249	-	6	57	92.76	-2.66	0.80	0.951862
14241	dm3.chrX	12,112,115 – 12,112,178	- - - intron="intron;ID=intron_FBgn0259240:4_FBgn0259240:5;Name=Ten-a-in;Parent=FBtr0300203;parent_type=mRNA" - - - -	19608	12,112,115 – 12,112,178	-	5	63	97.78	-2.73	0.99	0.993686
14242	dm3.chrX	12,115,318 – 12,115,461	- - - intron="intron;ID=intron_FBgn0259240:4_FBgn0259240:5;Name=Ten-a-in;Parent=FBtr0300203;parent_type=mRNA" - - - -	19609	12,115,318 – 12,115,422	-	6	112	73.84	-1.88	0.61	0.978587
14243	dm3.chrX	12,119,154 – 12,119,273	- - - intron="intron;ID=intron_FBgn0259240:4_FBgn0259240:5;Name=Ten-a-in;Parent=FBtr0300203;parent_type=mRNA" - - - -	19611	12,119,154 – 12,119,251	+	6	99	76.22	-1.95	0.53	0.908286
				19613	12,119,181 – 12,119,273	+	6	100	75.31	-2.50	0.54	0.985546
				19614	12,119,181 – 12,119,273	-	6	100	75.31	-2.29	0.48	0.933326
14247	dm3.chrX	12,129,770 – 12,129,836	- - - - - - - -	19621	12,129,770 – 12,129,836	-	5	74	80.84	-1.49	0.87	0.918894
14250	dm3.chrX	12,136,879 – 12,136,996	- - - - - - - -	19625	12,136,879 – 12,136,996	-	4	127	83.38	-2.47	0.74	0.960751
14251	dm3.chrX	12,144,472 – 12,144,539	- - - - - - - -	19626	12,144,472 – 12,144,539	-	12	70	90.39	-2.06	0.89	0.966910
14252	dm3.chrX	12,154,593 – 12,154,724	- - - - - - - -	19627	12,154,593 – 12,154,724	+	7	140	74.03	-2.94	0.40	0.987770
14253	dm3.chrX	12,157,272 – 12,157,362	- - - - - - - -	19628	12,157,272 – 12,157,362	+	4	96	83.21	-3.36	0.69	0.994316
14254	dm3.chrX	12,159,591 – 12,159,681	- - - - - - - -	19630	12,159,591 – 12,159,681	-	8	120	74.41	-1.64	0.63	0.916802
14255	dm3.chrX	12,170,798 – 12,170,890	- - - intron="intron;ID=intron_FBgn0259240:9_FBgn0259240:10;Name=Ten-a-in;Parent=FBtr0300201,FBtr0300202,FBtr0300203,FBtr0300204,FBtr0299858,FBtr0299859,FBtr0299860;parent_type=mRNA" - - - -	19631	12,170,798 – 12,170,890	+	5	92	93.36	-2.69	0.91	0.988191
14258	dm3.chrX	12,200,677 – 12,200,783	- - - intron="intron;ID=intron_FBgn0259240:15_FBgn0259240:16;Name=Ten-a-in;Parent=FBtr0300201,FBtr0300202,FBtr0300203,FBtr0300204,FBtr0299858,FBtr0299859,FBtr0299860;parent_type=mRNA" - - - -	19634	12,200,677 – 12,200,783	-	6	110	53.08	-1.64	0.27	0.908815
14261	dm3.chrX	12,211,724 – 12,211,831	- - - intron="intron;ID=intron_FBgn0259240:18_FBgn0259240:19;Name=Ten-a-in;Parent=FBtr0300201,FBtr0300202,FBtr0300203,FBtr0300204,FBtr0299858,FBtr0299859,FBtr0299860;parent_type=mRNA" - - - -	19637	12,211,724 – 12,211,831	-	6	114	66.77	-2.12	0.35	0.942902
14262	dm3.chrX	12,220,355 – 12,220,462	- - - intron="intron;ID=intron_FBgn0259240:20_FBgn0259240:22;Name=Ten-a-in;Parent=FBtr0300202,FBtr0300203,FBtr0300204,FBtr0299859,FBtr0299860;parent_type=mRNA" - - - -	19639	12,220,355 – 12,220,462	-	6	110	78.07	-1.96	0.75	0.980806
14265	dm3.chrX	12,246,751 – 12,246,865	- - - - - - - -	19643	12,246,751 – 12,246,865	-	4	115	76.49	-2.63	0.60	0.977908
14266	dm3.chrX	12,249,540 – 12,249,641	- - - - - - - -	19644	12,249,540 – 12,249,641	-	4	107	58.69	-2.33	0.35	0.982750
14267	dm3.chrX	12,254,545 – 12,254,679	- - - - - - - -	19645	12,254,545 – 12,254,679	+	10	147	78.88	-2.81	0.44	0.961620
14273	dm3.chrX	12,296,318 – 12,296,409	- - - - - - - -	19652	12,296,318 – 12,296,409	+	4	92	78.44	-2.05	0.64	0.900027
14274	dm3.chrX	12,300,592 – 12,300,789	- - CDS="CDS;ID=CDS_CG32651:1_918;Name=CG32651-cds;Parent=FBtr0073672;parent_type=mRNA" - - - - -	19653	12,300,592 – 12,300,712	-	6	120	77.94	-3.02	0.38	0.951097
14274	dm3.chrX	12,300,592 – 12,300,789		19655	12,300,672 – 12,300,789	-	6	120	73.67	-2.37	0.43	0.950870
14277	dm3.chrX	12,309,028 – 12,309,124	- - - - - - - -	19658	12,309,028 – 12,309,124	-	5	114	77.44	-2.12	0.73	0.980897
14279	dm3.chrX	12,314,466 – 12,314,593	- - - - - - - -	19660	12,314,466 – 12,314,564	+	6	112	79.67	-1.98	0.70	0.935806
14279	dm3.chrX	12,314,466 – 12,314,593	- - - - - - - -	19661	12,314,494 – 12,314,593	+	6	118	83.18	-2.66	0.66	0.970224
14281	dm3.chrX	12,319,113 – 12,319,206	- - - - - - - -	19663	12,319,113 – 12,319,206	+	11	93	100.00	-1.80	1.00	0.944448
14282	dm3.chrX	12,324,222 – 12,324,332	- - - - - - - -	19665	12,324,222 – 12,324,332	-	8	137	67.33	-1.35	0.64	0.971723
14283	dm3.chrX	12,324,586 – 12,324,700	- - - - - - - -	19666	12,324,586 – 12,324,700	+	8	118	85.34	-2.50	0.68	0.966787
14289	dm3.chrX	12,367,064 – 12,367,119	- - - intron="intron;ID=intron_FBgn0259143:3_FBgn0259143:4;Name=CG42258-in;Parent=FBtr0299559;parent_type=mRNA" - - - -	19673	12,367,064 – 12,367,119	+	4	55	94.83	-4.01	0.98	0.998794
14289	dm3.chrX	12,367,064 – 12,367,119		19674	12,367,064 – 12,367,119	-	4	55	94.83	-2.29	0.98	0.986109
14292	dm3.chrX	12,396,935 – 12,397,050	- - - intron="intron;ID=intron_CG2556:1_CG2556:2;Name=CG2556-in;Parent=FBtr0073652;parent_type=mRNA" - - - -	19678	12,396,935 – 12,397,050	-	5	117	72.87	-2.06	0.67	0.987874
14293	dm3.chrX	12,397,284 – 12,397,375	- - - intron="intron;ID=intron_CG2556:1_CG2556:2;Name=CG2556-in;Parent=FBtr0073652;parent_type=mRNA" - - - -	19679	12,397,284 – 12,397,375	+	5	107	89.66	-2.28	0.86	0.954812
14294	dm3.chrX	12,408,017 – 12,408,114	- - - intron="intron;ID=intron_CG2556:1_CG2556:2;Name=CG2556-in;Parent=FBtr0073652;parent_type=mRNA" - - - -	19680	12,408,017 – 12,408,114	-	4	97	95.51	-1.86	0.98	0.956553
14297	dm3.chrX	12,429,183 – 12,429,286	- - - - - - - -	19683	12,429,183 – 12,429,286	+	6	103	75.15	-1.46	0.64	0.920359
14297	dm3.chrX	12,429,183 – 12,429,286	- - - - - - - -	19684	12,429,183 – 12,429,286	-	6	103	75.15	-1.87	0.67	0.983864
14298	dm3.chrX	12,429,357 – 12,429,453	- - - - - - - -	19685	12,429,357 – 12,429,453	-	12	109	78.00	-1.22	0.81	0.933137
14300	dm3.chrX	12,435,619 – 12,435,706	- - - - - - - -	19689	12,435,619 – 12,435,706	-	7	102	71.36	-2.32	0.63	0.996132
14301	dm3.chrX	12,436,474 – 12,436,579	- - - - - - - -	19690	12,436,474 – 12,436,579	+	5	120	76.52	-2.88	0.51	0.982352
14302	dm3.chrX	12,444,683 – 12,444,792	- - - - - - - -	19691	12,444,683 – 12,444,792	+	5	109	86.12	-2.37	0.79	0.963531
14304	dm3.chrX	12,452,878 – 12,452,969	- - - - - - - -	19693	12,452,878 – 12,452,969	-	9	92	69.74	-1.70	0.56	0.991698
14306	dm3.chrX	12,459,512 – 12,459,596	- - - - - - - -	19695	12,459,512 – 12,459,596	+	3	84	98.41	-1.46	1.02	0.928964
14312	dm3.chrX	12,530,384 – 12,530,481	FBnoncoding="pre_miRNA;ID=FBtr0304203;Name=mir-970-RM;Parent=FBgn0262187;Alias=CR42894-RM;Dbxref=FlyBase_Annotation_IDs:CR42894-RM,miRBase:MI0005827" - - intron="intron;ID=intron_FBgn0030412:4_FBgn0030412:5;Name=tomosyn-in;Parent=FBtr0073677,FBtr0073678,FBtr0073679,FBtr0073676,FBtr0300375,FBtr0300376;parent_type=mRNA" - - - "mirBase_v16=dme-mir-970\|5.6e-40"	19701	12,530,384 – 12,530,481	+	12	104	72.81	-1.53	0.73	0.990369
14313	dm3.chrX	12,537,097 – 12,537,184	- - - intron="intron;ID=intron_FBgn0030412:16_FBgn0030412:19;Name=tomosyn-in;Parent=FBtr0073677,FBtr0073676;parent_type=mRNA" - - - -	19702	12,537,097 – 12,537,184	-	6	91	68.58	-1.82	0.45	0.939368
14315	dm3.chrX	12,558,443 – 12,558,560	- - - intron="intron;ID=intron_CG4070:6_CG4070:3;Name=Tis11-in;Parent=FBtr0073683;parent_type=mRNA" - - - -	19704	12,558,443 – 12,558,557	+	3	114	98.25	-2.78	1.00	0.994539
14315	dm3.chrX	12,558,443 – 12,558,560		19706	12,558,446 – 12,558,560	+	3	114	98.25	-2.74	0.99	0.993168
14316	dm3.chrX	12,562,134 – 12,562,251	- - - intron="intron;ID=intron_CG4070:6_CG4070:3;Name=Tis11-in;Parent=FBtr0073683;parent_type=mRNA" - - - -	19707	12,562,134 – 12,562,251	+	5	118	84.18	-2.29	0.69	0.904201
14318	dm3.chrX	12,563,362 – 12,563,505	- - - intron="intron;ID=intron_CG4070:6_CG4070:3;Name=Tis11-in;Parent=FBtr0073683;parent_type=mRNA" - - - -	19709	12,563,362 – 12,563,474	+	5	120	87.70	-2.48	0.73	0.916028
14318	dm3.chrX	12,563,362 – 12,563,505		19710	12,563,362 – 12,563,474	-	5	120	87.70	-2.97	0.72	0.977413
14320	dm3.chrX	12,587,700 – 12,587,755	- - - intron="intron;ID=intron_CG4013:6_CG4013:7;Name=Smr-in;Parent=FBtr0073706,FBtr0073707,FBtr0073708;parent_type=mRNA" - - - -	19713	12,587,700 – 12,587,755	-	8	57	92.82	-2.35	1.02	0.994980
14322	dm3.chrX	12,620,126 – 12,620,216	- - - intron="intron;ID=intron_CG4013:2_CG4013:3;Name=Smr-in;Parent=FBtr0073706;parent_type=mRNA" - - - -	19716	12,620,126 – 12,620,216	-	5	102	60.62	-1.79	0.40	0.967454
14323	dm3.chrX	12,624,749 – 12,624,813	- - - intron="intron;ID=intron_CG4013:2_CG4013:3;Name=Smr-in;Parent=FBtr0073706;parent_type=mRNA" - - - -	19717	12,624,749 – 12,624,813	+	3	65	95.85	-2.47	0.91	0.965256
14323	dm3.chrX	12,624,749 – 12,624,813		19718	12,624,749 – 12,624,813	-	3	65	95.85	-2.97	0.98	0.995747
14324	dm3.chrX	12,639,994 – 12,640,134	- - - intron="intron;ID=intron_CG4004:3_CG4004:4;Name=CG4004-in;Parent=FBtr0073687;parent_type=mRNA" - - - -	19719	12,639,994 – 12,640,134	+	3	140	81.38	-3.21	0.76	0.995681
14324	dm3.chrX	12,639,994 – 12,640,134		19720	12,639,994 – 12,640,134	-	3	140	81.38	-3.95	0.70	0.998632
14329	dm3.chrX	12,675,050 – 12,675,160	- - - intron="intron;ID=intron_CG32647:2_CG32647:3;Name=CG32647-in;Parent=FBtr0073702,FBtr0073703;parent_type=mRNA" - - - -	19725	12,675,050 – 12,675,160	-	3	110	75.30	-2.66	0.61	0.979648
14330	dm3.chrX	12,676,220 – 12,676,348	- - - intron="intron;ID=intron_CG32647:2_CG32647:3;Name=CG32647-in;Parent=FBtr0073702,FBtr0073703;parent_type=mRNA" - - - -	19727	12,676,258 – 12,676,348	-	5	93	73.55	-1.85	0.60	0.953530
14332	dm3.chrX	12,711,962 – 12,712,017	- - - intron="intron;ID=intron_FBgn0259171:10_FBgn0259171:9;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19730	12,711,962 – 12,712,017	-	5	55	93.82	-1.76	0.98	0.955722
14333	dm3.chrX	12,719,388 – 12,719,439	- - - intron="intron;ID=intron_FBgn0259171:10_FBgn0259171:9;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19731	12,719,388 – 12,719,439	+	3	58	55.88	-1.49	0.60	0.988102
14336	dm3.chrX	12,733,523 – 12,733,627	- - - intron="intron;ID=intron_FBgn0259171:11_FBgn0259171:10;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19735	12,733,523 – 12,733,624	-	5	118	61.32	-1.58	0.42	0.915197
14336	dm3.chrX	12,733,523 – 12,733,627		19736	12,733,526 – 12,733,627	-	5	118	60.43	-1.49	0.44	0.939987
14337	dm3.chrX	12,741,419 – 12,741,568	- - - intron="intron;ID=intron_FBgn0259171:11_FBgn0259171:10;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19738	12,741,456 – 12,741,568	+	6	119	78.82	-2.45	0.51	0.935759
14338	dm3.chrX	12,752,684 – 12,752,763	- - - intron="intron;ID=intron_FBgn0259171:11_FBgn0259171:10;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19739	12,752,684 – 12,752,763	+	4	80	74.34	-1.87	0.67	0.927195
14339	dm3.chrX	12,764,449 – 12,764,662	- - - intron="intron;ID=intron_FBgn0259171:11_FBgn0259171:10;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19742	12,764,548 – 12,764,660	-	5	118	67.66	-2.47	0.53	0.997461
				19743	12,764,550 – 12,764,662	+	5	119	65.76	-2.14	0.36	0.923121
				19744	12,764,550 – 12,764,662	-	5	119	65.76	-2.45	0.43	0.992984
14340	dm3.chrX	12,765,856 – 12,766,008	- - - intron="intron;ID=intron_FBgn0259171:11_FBgn0259171:10;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19745	12,765,856 – 12,766,008	-	6	159	77.20	-2.65	0.59	0.990460
14350	dm3.chrX	12,847,871 – 12,847,943	- - - intron="intron;ID=intron_FBgn0030437:9_FBgn0030437:8;Name=CG4395-in;Parent=FBtr0073753;parent_type=mRNA" - - - -	19756	12,847,871 – 12,847,943	-	6	72	64.03	-0.87	0.57	0.939447
14351	dm3.chrX	12,851,479 – 12,851,592	- - - - - - - -	19757	12,851,479 – 12,851,592	-	6	113	70.07	-2.49	0.44	0.992003
14354	dm3.chrX	12,865,675 – 12,865,808	- - CDS="CDS;ID=CDS_FBgn0030438:3_1027;Name=CG15721-cds;Parent=FBtr0305600;parent_type=mRNA" - - - - -	19760	12,865,675 – 12,865,786	-	3	111	88.59	-2.09	0.86	0.920550
14355	dm3.chrX	12,869,334 – 12,869,424	- - CDS="CDS;ID=CDS_FBgn0030439:1_1027;Name=CG12716-cds;Parent=FBtr0073752;parent_type=mRNA" - - - - -	19762	12,869,334 – 12,869,424	+	7	99	60.03	-1.56	0.35	0.928708
14357	dm3.chrX	12,884,100 – 12,884,199	- - - - - - - -	19764	12,884,100 – 12,884,199	+	6	118	69.21	-2.15	0.51	0.971688
14359	dm3.chrX	12,885,511 – 12,885,607	- - - - - - - -	19768	12,885,511 – 12,885,607	-	6	117	73.32	-3.52	0.43	0.997036
14361	dm3.chrX	12,887,775 – 12,887,870	- - - - - - - -	19770	12,887,775 – 12,887,870	+	3	97	88.24	-2.34	0.84	0.947837
14367	dm3.chrX	12,905,418 – 12,905,568	- - - - - - - -	19777	12,905,418 – 12,905,530	+	6	120	71.05	-1.86	0.60	0.983891
				19778	12,905,418 – 12,905,530	-	6	120	71.05	-1.37	0.66	0.953658
				19779	12,905,452 – 12,905,568	+	6	120	61.90	-2.60	0.44	0.999193
				19780	12,905,452 – 12,905,568	-	6	120	61.90	-1.17	0.50	0.962371
14371	dm3.chrX	12,924,270 – 12,924,334	- - - - - - - -	19784	12,924,270 – 12,924,334	+	6	65	78.76	-2.03	0.59	0.925621
14376	dm3.chrX	12,956,085 – 12,956,190	FBnoncoding="pre_miRNA;ID=FBtr0304281;Name=mir-971-RM;Parent=FBgn0262222;Alias=CR42929-RM;Dbxref=FlyBase_Annotation_IDs:CR42929-RM,miRBase:MI0005828" - - - - - - "mirBase_v16=dme-mir-971\|4.1e-44"	19791	12,956,085 – 12,956,190	+	11	117	70.86	-2.65	0.68	0.999407
14376	dm3.chrX	12,956,085 – 12,956,190		19792	12,956,085 – 12,956,190	-	11	117	70.86	-1.09	0.61	0.906252
14377	dm3.chrX	12,956,321 – 12,956,414	- - - - - - - -	19793	12,956,321 – 12,956,414	+	5	96	86.52	-7.07	0.88	0.994812
14377	dm3.chrX	12,956,321 – 12,956,414	- - - - - - - -	19794	12,956,321 – 12,956,414	-	5	96	86.52	-4.70	0.94	0.999137
14385	dm3.chrX	13,013,709 – 13,013,834	- - - intron="intron;ID=intron_CG4346:1_CG4346:2;Name=CG42237-in;Parent=FBtr0073722;parent_type=mRNA" - - - -	19805	13,013,709 – 13,013,799	-	5	96	84.15	-2.18	0.74	0.926790
14388	dm3.chrX	13,019,975 – 13,020,077	- - - intron="intron;ID=intron_FBgn0052638:3_FBgn0052638:2;Name=CG32638-in;Parent=FBtr0300453;parent_type=mRNA" - - - -	19809	13,019,975 – 13,020,070	+	5	116	75.48	-2.06	0.61	0.938267
14393	dm3.chrX	13,043,134 – 13,043,231	- - - intron="intron;ID=intron_CG32645:1_CG32645:2;Name=CG32645-in;Parent=FBtr0073725;parent_type=mRNA" - - - -	19817	13,043,134 – 13,043,231	+	5	97	68.32	-2.28	0.42	0.980032
14401	dm3.chrX	13,103,938 – 13,104,034	- - - intron="intron;ID=intron_FBgn0005410:15_FBgn0005410:14;Name=sno-in;Parent=FBtr0073735,FBtr0073736,FBtr0112848,FBtr0112849;parent_type=mRNA" - - - -	19826	13,103,938 – 13,104,034	+	6	101	73.13	-1.47	0.61	0.911634
14403	dm3.chrX	13,121,158 – 13,121,254	- - - intron="intron;ID=intron_FBgn0004456:9_FBgn0004456:8;Name=mew-in;Parent=FBtr0073731;parent_type=mRNA" - - - -	19829	13,121,158 – 13,121,254	+	3	109	81.48	-2.97	0.61	0.965450
14405	dm3.chrX	13,127,824 – 13,127,917	- - - intron="intron;ID=intron_FBgn0004456:9_FBgn0004456:8;Name=mew-in;Parent=FBtr0073731;parent_type=mRNA" - - - -	19832	13,127,824 – 13,127,917	+	5	93	86.32	-2.21	0.80	0.951860
14408	dm3.chrX	13,139,707 – 13,139,802	- - - intron="intron;ID=intron_FBgn0004456:11_FBgn0004456:9;Name=mew-in;Parent=FBtr0073731;parent_type=mRNA" - - - -	19835	13,139,707 – 13,139,802	+	4	120	71.78	-2.52	0.65	0.992375
14410	dm3.chrX	13,168,417 – 13,168,483	- - - - - - - -	19838	13,168,417 – 13,168,483	+	6	72	90.39	-2.33	0.78	0.903078
14411	dm3.chrX	13,175,278 – 13,175,374	- - - intron="intron;ID=intron_FBgn0041210:14_FBgn0041210:13;Name=HDAC4-in;Parent=FBtr0301298,FBtr0301299;parent_type=mRNA" - - - -	19840	13,175,278 – 13,175,374	-	4	100	88.40	-3.18	0.80	0.992875
14414	dm3.chrX	13,182,250 – 13,182,346	- - - - - - - -	19843	13,182,250 – 13,182,346	+	5	105	65.10	-2.09	0.57	0.994820
14416	dm3.chrX	13,195,845 – 13,195,936	- - - - - - - -	19846	13,195,845 – 13,195,936	+	4	95	71.15	-3.32	0.51	0.998535
14416	dm3.chrX	13,195,845 – 13,195,936	- - - - - - - -	19847	13,195,845 – 13,195,936	-	4	95	71.15	-4.19	0.43	0.999501
14419	dm3.chrX	13,225,752 – 13,225,855	- - - - - - - -	19851	13,225,752 – 13,225,855	+	7	117	60.96	-1.18	0.44	0.917003
14421	dm3.chrX	13,242,549 – 13,242,639	- - - - - - - -	19853	13,242,549 – 13,242,639	+	7	96	66.02	-0.84	0.61	0.939644
14422	dm3.chrX	13,242,824 – 13,242,904	- - - - - - - -	19854	13,242,824 – 13,242,904	-	3	94	81.21	-2.79	0.63	0.957557
14423	dm3.chrX	13,245,182 – 13,245,300	- - - - - - - -	19855	13,245,182 – 13,245,300	+	5	120	95.68	-2.63	0.95	0.989084
14425	dm3.chrX	13,247,763 – 13,247,815	- - - - - - - -	19860	13,247,763 – 13,247,815	-	6	59	90.80	-3.05	0.67	0.947967
14426	dm3.chrX	13,257,059 – 13,257,118	- - - intron="intron;ID=intron_CG10617:1_CG10617:2;Name=Syt12-in;Parent=FBtr0073767;parent_type=mRNA" - - - -	19861	13,257,059 – 13,257,118	-	9	71	74.53	-2.35	0.44	0.946430
14427	dm3.chrX	13,267,230 – 13,267,325	- - - intron="intron;ID=intron_CG1640:13_CG1640:2;Name=CG1640-in;Parent=FBtr0073774;parent_type=mRNA" - - - -	19862	13,267,230 – 13,267,325	-	4	114	69.23	-2.06	0.58	0.969338
14428	dm3.chrX	13,271,166 – 13,271,225	- - - intron="intron;ID=intron_CG1640:3_CG1640:4;Name=CG1640-in;Parent=FBtr0073769,FBtr0073770,FBtr0073771,FBtr0073772,FBtr0073773,FBtr0073774;parent_type=mRNA" - - - -	19863	13,271,166 – 13,271,225	+	5	59	63.64	-1.24	0.50	0.903139
14430	dm3.chrX	13,285,315 – 13,285,425	- - - - - - - -	19865	13,285,315 – 13,285,425	+	6	135	50.50	-1.75	0.27	0.908848
14431	dm3.chrX	13,288,919 – 13,289,059	- - - - - - - -	19868	13,288,919 – 13,289,059	-	3	143	84.83	-2.97	0.75	0.984883
14432	dm3.chrX	13,291,996 – 13,292,141	- - - intron="intron;ID=intron_CG1673:1_CG1673:2;Name=CG1673-in;Parent=FBtr0073777;parent_type=mRNA" - - - -	19869	13,291,996 – 13,292,105	+	7	113	70.24	-2.65	0.48	0.996155
14432	dm3.chrX	13,291,996 – 13,292,141		19870	13,291,996 – 13,292,105	-	7	113	70.24	-2.69	0.40	0.987537
14438	dm3.chrX	13,317,233 – 13,317,328	- - - - - - - -	19878	13,317,233 – 13,317,328	+	3	95	52.28	-1.74	0.45	0.981068
14438	dm3.chrX	13,317,233 – 13,317,328	- - - - - - - -	19879	13,317,233 – 13,317,328	-	3	95	52.28	-1.62	0.50	0.987531
14443	dm3.chrX	13,367,987 – 13,368,056	- - - - - - - -	19884	13,367,987 – 13,368,056	-	7	72	73.02	-0.99	0.70	0.913246
14444	dm3.chrX	13,374,088 – 13,374,212	- - - - - - - -	19886	13,374,121 – 13,374,212	+	11	97	87.11	-1.88	0.87	0.958320
14444	dm3.chrX	13,374,088 – 13,374,212	- - - - - - - -	19887	13,374,121 – 13,374,212	-	11	97	87.11	-1.91	0.81	0.930353
14448	dm3.chrX	13,415,803 – 13,415,899	- - - intron="intron;ID=intron_FBgn0030491:2_FBgn0030491:3;Name=CG15753-in;Parent=FBtr0273441;parent_type=mRNA" - - - -	19891	13,415,803 – 13,415,899	-	5	117	79.07	-3.30	0.63	0.996468
14452	dm3.chrX	13,428,169 – 13,428,235	- - - - - - - -	19895	13,428,169 – 13,428,235	+	5	70	70.12	-1.77	0.57	0.967943
14453	dm3.chrX	13,432,676 – 13,432,743	- - - - - - - -	19897	13,432,676 – 13,432,743	-	6	80	73.36	-2.22	0.66	0.991490
14458	dm3.chrX	13,465,381 – 13,465,497	- - - intron="intron;ID=intron_FBgn0052632:1_FBgn0052632:2;Name=Tango13-in;Parent=FBtr0113443;parent_type=mRNA" - - - -	19902	13,465,381 – 13,465,495	-	5	120	87.49	-1.88	0.90	0.947170
14458	dm3.chrX	13,465,381 – 13,465,497		19903	13,465,383 – 13,465,497	-	5	120	87.83	-1.92	0.90	0.950404
14461	dm3.chrX	13,476,540 – 13,476,597	- - - intron="intron;ID=intron_FBgn0052632:5_FBgn0052632:6;Name=Tango13-in;Parent=FBtr0073803,FBtr0113443;parent_type=mRNA" - - - -	19907	13,476,540 – 13,476,597	-	4	57	97.37	-2.45	0.98	0.987420
14463	dm3.chrX	13,481,053 – 13,481,183	- - - intron="intron;ID=intron_FBgn0052632:10_FBgn0052632:12;Name=Tango13-in;Parent=FBtr0073803;parent_type=mRNA" - - - -	19909	13,481,053 – 13,481,168	-	6	118	67.30	-2.10	0.39	0.961727
14463	dm3.chrX	13,481,053 – 13,481,183		19910	13,481,091 – 13,481,183	-	5	95	79.02	-2.62	0.68	0.987966
14473	dm3.chrX	13,543,443 – 13,543,562	- - CDS="CDS;ID=CDS_FBgn0030505:4_975;Name=NFAT-cds;Parent=FBtr0301451;parent_type=mRNA" - - - - -	19920	13,543,443 – 13,543,562	+	12	119	76.03	-1.48	0.65	0.964495
14474	dm3.chrX	13,552,133 – 13,552,223	- - CDS="CDS;ID=CDS_FBgn0030505:11_975;Name=NFAT-cds;Parent=FBtr0301451;parent_type=mRNA" - - - - -	19921	13,552,133 – 13,552,223	+	7	120	87.40	-2.72	1.00	0.997174
14476	dm3.chrX	13,563,335 – 13,563,406	- - - - - - - -	19923	13,563,335 – 13,563,406	+	4	76	67.34	-2.16	0.62	0.994500
14476	dm3.chrX	13,563,335 – 13,563,406	- - - - - - - -	19924	13,563,335 – 13,563,406	-	4	76	67.34	-0.94	0.77	0.914441
14479	dm3.chrX	13,583,976 – 13,584,073	- - - intron="intron;ID=intron_CG9940:2_CG9940:3;Name=CG9940-in;Parent=FBtr0073844,FBtr0073845;parent_type=mRNA" - - - -	19927	13,583,976 – 13,584,073	-	7	110	58.07	-2.33	0.22	0.921093
14480	dm3.chrX	13,588,331 – 13,588,463	- - - intron="intron;ID=intron_FBgn0052627:1_FBgn0052627:6;Name=NnaD-in;Parent=FBtr0304971;parent_type=mRNA" - - - -	19928	13,588,331 – 13,588,423	-	5	97	74.71	-1.99	0.66	0.978678
14482	dm3.chrX	13,606,587 – 13,606,639	- - - intron="intron;ID=intron_FBgn0052627:12_FBgn0052627:13;Name=NnaD-in;Parent=FBtr0073813,FBtr0073814,FBtr0073815,FBtr0113441,FBtr0304971,FBtr0304972,FBtr0304973;parent_type=mRNA" - - - -	19932	13,606,587 – 13,606,639	+	3	52	90.38	-0.50	1.11	0.907821
14490	dm3.chrX	13,630,851 – 13,630,948	- - - - - - - -	19946	13,630,857 – 13,630,948	+	4	114	81.99	-2.11	0.79	0.944714
14492	dm3.chrX	13,680,678 – 13,680,805	- - - intron="intron;ID=intron_FBgn0053174:3_FBgn0053174:4;Name=inaE-in;Parent=FBtr0073825,FBtr0073826,FBtr0290302,FBtr0290303;parent_type=mRNA" - - - -	19948	13,680,678 – 13,680,805	-	3	127	92.13	-2.69	0.81	0.947746
14494	dm3.chrX	13,681,978 – 13,682,034	- - - intron="intron;ID=intron_FBgn0053174:3_FBgn0053174:4;Name=inaE-in;Parent=FBtr0073825,FBtr0073826,FBtr0290302,FBtr0290303;parent_type=mRNA" - - - -	19951	13,681,978 – 13,682,034	+	6	56	78.93	-1.94	0.67	0.955646
14495	dm3.chrX	13,688,715 – 13,688,792	- - - - - - - -	19952	13,688,715 – 13,688,792	-	6	77	91.00	-2.34	0.79	0.913199
14497	dm3.chrX	13,695,421 – 13,695,557	- - - - - - - -	19954	13,695,421 – 13,695,515	+	6	110	65.04	-3.85	0.62	0.999946
				19955	13,695,421 – 13,695,515	-	6	110	65.04	-3.60	0.66	0.999925
				19956	13,695,453 – 13,695,553	+	6	119	48.35	-3.52	0.38	0.999968
				19957	13,695,453 – 13,695,553	-	6	119	48.35	-4.35	0.32	0.999983
				19958	13,695,457 – 13,695,557	+	7	115	52.09	-3.96	0.49	0.999994
				19959	13,695,457 – 13,695,557	-	7	115	52.09	-4.89	0.46	0.999996
14499	dm3.chrX	13,709,870 – 13,709,969	- - - intron="intron;ID=intron_CG10997:1_CG10997:2;Name=Clic-in;Parent=FBtr0073835;parent_type=mRNA" - - - -	19961	13,709,870 – 13,709,969	+	5	99	97.94	-2.71	0.83	0.920778
14499	dm3.chrX	13,709,870 – 13,709,969		19962	13,709,870 – 13,709,969	-	5	99	97.94	-4.38	0.83	0.997163
14500	dm3.chrX	13,710,020 – 13,710,123	- - - intron="intron;ID=intron_CG10997:1_CG10997:2;Name=Clic-in;Parent=FBtr0073835;parent_type=mRNA" - - - -	19963	13,710,020 – 13,710,123	+	6	117	65.62	-1.35	0.55	0.978018
14503	dm3.chrX	13,721,042 – 13,721,178	- - CDS="CDS;ID=CDS_FBgn0030530:4_955;Name=jub-cds;Parent=FBtr0303419;parent_type=mRNA" - - - - -	19967	13,721,042 – 13,721,146	+	11	108	67.55	-1.28	0.44	0.944091
				19968	13,721,042 – 13,721,146	-	11	108	67.55	-0.89	0.54	0.957109
				19969	13,721,062 – 13,721,178	+	8	117	72.77	-1.59	0.54	0.905307
				19970	13,721,062 – 13,721,178	-	8	117	72.77	-1.44	0.62	0.940234
14510	dm3.chrX	13,801,316 – 13,801,376	- - - intron="intron;ID=intron_FBgn0085375:10_FBgn0085375:9;Name=mamo-in;Parent=FBtr0303571;parent_type=mRNA" - - - -	19977	13,801,316 – 13,801,376	+	5	65	88.60	-2.71	0.84	0.985622
14510	dm3.chrX	13,801,316 – 13,801,376		19978	13,801,316 – 13,801,376	-	5	65	88.60	-2.80	0.85	0.989621
14512	dm3.chrX	13,813,236 – 13,813,297	- - - intron="intron;ID=intron_FBgn0085375:10_FBgn0085375:9;Name=mamo-in;Parent=FBtr0303571;parent_type=mRNA" - - - -	19980	13,813,236 – 13,813,297	+	8	62	74.23	-1.94	0.49	0.964760
14513	dm3.chrX	13,815,834 – 13,815,903	- - - intron="intron;ID=intron_FBgn0085375:10_FBgn0085375:9;Name=mamo-in;Parent=FBtr0303571;parent_type=mRNA" - - - -	19981	13,815,834 – 13,815,903	+	5	69	80.29	-2.75	0.64	0.989590
14513	dm3.chrX	13,815,834 – 13,815,903		19982	13,815,834 – 13,815,903	-	5	69	80.29	-2.04	0.66	0.922244
14515	dm3.chrX	13,828,825 – 13,828,921	- - - - - - - -	19984	13,828,825 – 13,828,921	+	7	112	71.98	-1.56	0.72	0.987321
14525	dm3.chrX	13,887,506 – 13,887,563	- - - - - - - -	19995	13,887,506 – 13,887,563	+	7	58	76.18	-2.64	0.66	0.997813
14525	dm3.chrX	13,887,506 – 13,887,563	- - - - - - - -	19996	13,887,506 – 13,887,563	-	7	58	76.18	-2.17	0.53	0.966905
14526	dm3.chrX	13,895,306 – 13,895,424	- - - - - - - -	19997	13,895,306 – 13,895,424	-	3	142	71.06	-2.67	0.61	0.990915
14528	dm3.chrX	13,908,833 – 13,908,924	FBnoncoding="tRNA;ID=FBtr0073857;Name=tRNA:R:12Ee-RA;Parent=FBgn0011952;Dbxref=FlyBase_Annotation_IDs:CR32624-RA;score_text=Weakly" tRNAscann="Arg_chrX_trna5" - - "Rfam_10.0=RF00005;tRNA;AAJJ01004069.1/7732-7804\|2.5e-32" - - -	19999	13,908,833 – 13,908,924	+	13	110	71.03	-1.24	0.57	0.953585
14528	dm3.chrX	13,908,833 – 13,908,924		20000	13,908,833 – 13,908,924	-	13	110	71.03	-1.75	0.53	0.986851
14529	dm3.chrX	13,910,222 – 13,910,329	FBnoncoding="tRNA;ID=FBtr0073860;Name=tRNA:R:12Ea-RA;Parent=FBgn0011948;Dbxref=FlyBase_Annotation_IDs:CR32622-RA;score_text=Weakly" tRNAscann="Arg_chrX_trna8" - - "Rfam_10.0=RF00005;tRNA;AAJJ01004069.1/7732-7804\|7.4e-30" - - -	20001	13,910,222 – 13,910,329	+	9	120	66.61	-0.97	0.90	0.980598
14529	dm3.chrX	13,910,222 – 13,910,329		20002	13,910,222 – 13,910,329	-	9	120	66.61	-1.84	0.83	0.998035
14530	dm3.chrX	13,911,250 – 13,911,341	FBnoncoding="tRNA;ID=FBtr0073863;Name=tRNA:R:12Ed-RA;Parent=FBgn0011951;Dbxref=FlyBase_Annotation_IDs:CR32617-RA;score_text=Weakly" tRNAscann="Arg_chrX_trna11" - - "Rfam_10.0=RF00005;tRNA;AAJJ01004069.1/7732-7804\|2.3e-26" - - -	20003	13,911,250 – 13,911,341	+	11	100	55.29	-0.42	0.66	0.984407
14530	dm3.chrX	13,911,250 – 13,911,341		20004	13,911,250 – 13,911,341	-	11	100	55.29	-1.06	0.85	0.997163
14533	dm3.chrX	13,938,521 – 13,938,641	- - - - - - - -	20007	13,938,521 – 13,938,641	+	12	120	96.21	-2.30	0.88	0.931875
14534	dm3.chrX	13,947,131 – 13,947,189	- - CDS="CDS;ID=CDS_FBgn0053242:1_960;Name=Ste:CG33242-cds;Parent=FBtr0300091;parent_type=mRNA" - - - - -	20009	13,947,131 – 13,947,189	+	3	59	69.49	-1.97	0.72	0.980807
14538	dm3.chrX	13,982,193 – 13,982,291	- - - - - - - -	20014	13,982,193 – 13,982,291	+	6	114	74.11	-2.22	0.46	0.904486
14538	dm3.chrX	13,982,193 – 13,982,291	- - - - - - - -	20015	13,982,193 – 13,982,291	-	6	114	74.11	-2.59	0.47	0.976163
14542	dm3.chrX	13,987,532 – 13,987,592	- - - - - - - -	20019	13,987,532 – 13,987,592	+	5	61	73.08	-1.46	1.00	0.979212
14543	dm3.chrX	13,989,086 – 13,989,190	- - - - - - - -	20021	13,989,086 – 13,989,190	+	5	116	85.27	-2.08	0.84	0.959522
14546	dm3.chrX	13,997,395 – 13,997,490	FBnoncoding="tRNA;ID=FBtr0073872;Name=tRNA:S4:12Ee-RA;Parent=FBgn0011977;Dbxref=FlyBase_Annotation_IDs:CR32608-RA;score_text=Weakly" tRNAscann="Ser_chrX_trna22" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000077.1/46163-46244\|4.6e-40" - - -	20024	13,997,395 – 13,997,490	+	13	96	83.64	-1.14	0.90	0.912631
14546	dm3.chrX	13,997,395 – 13,997,490		20025	13,997,395 – 13,997,490	-	13	96	83.64	-1.40	0.86	0.942589
14547	dm3.chrX	13,998,012 – 13,998,067	- - - - - - - -	20026	13,998,012 – 13,998,067	+	8	55	75.23	-1.62	0.65	0.966164
14549	dm3.chrX	14,011,761 – 14,011,868	FBnoncoding="tRNA;ID=FBtr0073870;Name=tRNA:S7:12Eg-RA;Parent=FBgn0011983;Dbxref=FlyBase_Annotation_IDs:CR32609-RA;score_text=Weakly" tRNAscann="Ser_chrX_trna20" - - "Rfam_10.0=RF00005;tRNA;BABH01061698.1/19-99\|3.1e-35" - - -	20030	14,011,761 – 14,011,868	+	12	111	83.10	-1.12	0.93	0.911777
14549	dm3.chrX	14,011,761 – 14,011,868		20031	14,011,761 – 14,011,868	-	12	111	83.10	-1.23	0.98	0.950966
14550	dm3.chrX	14,019,365 – 14,019,433	- - - - - - - -	20032	14,019,365 – 14,019,433	+	5	82	66.85	-2.31	0.42	0.965280
14550	dm3.chrX	14,019,365 – 14,019,433	- - - - - - - -	20033	14,019,365 – 14,019,433	-	5	82	66.85	-2.28	0.41	0.953506
14552	dm3.chrX	14,036,784 – 14,036,888	- - - - - - - -	20035	14,036,784 – 14,036,883	-	9	114	69.17	-1.43	0.48	0.925977
14554	dm3.chrX	14,086,846 – 14,086,920	- - - - - - - -	20038	14,086,846 – 14,086,920	-	6	74	63.74	-2.59	0.42	0.998710
14555	dm3.chrX	14,099,606 – 14,099,736	- - - intron="intron;ID=intron_FBgn0040153:3_FBgn0040153:1;Name=l(1)G0469-in;Parent=FBtr0113318;parent_type=mRNA" - - - -	20039	14,099,606 – 14,099,719	-	5	120	87.83	-2.75	0.77	0.977394
14555	dm3.chrX	14,099,606 – 14,099,736		20040	14,099,623 – 14,099,736	-	5	120	85.81	-4.66	0.79	0.999406
14556	dm3.chrX	14,102,075 – 14,102,167	- - - intron="intron;ID=intron_FBgn0040153:6_FBgn0040153:4;Name=l(1)G0469-in;Parent=FBtr0073927;parent_type=mRNA" - - - -	20041	14,102,075 – 14,102,167	-	6	99	72.77	-2.56	0.50	0.991587
14564	dm3.chrX	14,140,237 – 14,140,372	- - CDS="CDS;ID=CDS_FBgn0260482:4_980;Name=CG32599-cds;Parent=FBtr0073904;parent_type=mRNA" - - - - -	20053	14,140,237 – 14,140,336	-	4	99	66.50	-1.43	0.58	0.944879
14564	dm3.chrX	14,140,237 – 14,140,372		20054	14,140,259 – 14,140,372	+	5	113	65.04	-1.27	0.47	0.902567
14565	dm3.chrX	14,165,319 – 14,165,374	- - - intron="intron;ID=intron_FBgn0002917:7_FBgn0002917:8;Name=na-in;Parent=FBtr0112815;parent_type=mRNA" - - - -	20055	14,165,319 – 14,165,374	-	6	55	96.97	-1.89	0.96	0.939680
14568	dm3.chrX	14,193,140 – 14,193,235	- - - intron="intron;ID=intron_FBgn0030562:4_FBgn0030562:3;Name=CG9400-in;Parent=FBtr0112982;parent_type=mRNA" - - - -	20058	14,193,140 – 14,193,235	-	7	113	67.16	-2.30	0.40	0.981332
14570	dm3.chrX	14,206,652 – 14,206,769	- - - - - - - -	20060	14,206,652 – 14,206,769	-	3	117	96.58	-3.51	0.97	0.997637
14571	dm3.chrX	14,206,987 – 14,207,092	- - - - - - - -	20062	14,206,987 – 14,207,092	-	3	108	84.69	-4.10	0.66	0.997935
14573	dm3.chrX	14,214,562 – 14,214,675	- - - - - - - -	20064	14,214,562 – 14,214,675	-	3	113	80.56	-2.24	0.77	0.940822
14575	dm3.chrX	14,221,700 – 14,221,860	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20066	14,221,700 – 14,221,820	+	5	120	93.92	-2.33	0.83	0.900210
14575	dm3.chrX	14,221,700 – 14,221,860		20067	14,221,700 – 14,221,820	-	5	120	93.92	-3.12	0.82	0.985668
14579	dm3.chrX	14,226,563 – 14,226,659	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20073	14,226,563 – 14,226,659	-	7	104	69.18	-1.61	0.57	0.986433
14582	dm3.chrX	14,236,413 – 14,236,504	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20076	14,236,413 – 14,236,504	+	5	121	70.15	-1.68	0.79	0.979321
14584	dm3.chrX	14,239,432 – 14,239,540	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20079	14,239,432 – 14,239,540	-	6	120	73.05	-1.68	0.60	0.949306
14587	dm3.chrX	14,246,494 – 14,246,596	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20083	14,246,494 – 14,246,596	+	6	113	75.09	-1.81	0.56	0.908613
14589	dm3.chrX	14,254,136 – 14,254,330	- - - intron="intron;ID=intron_CG32600:3_CG32600:4;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" "Rfam_10.0=RF00136;SNORD81;AASW01047298.1/2708-2783\|1.9e-13" - - -	20085	14,254,136 – 14,254,254	-	5	121	81.42	-2.14	0.68	0.927012
14589	dm3.chrX	14,254,136 – 14,254,330		20086	14,254,174 – 14,254,290	-	5	120	77.77	-2.20	0.62	0.953791
14592	dm3.chrX	14,265,299 – 14,265,404	- - - intron="intron;ID=intron_CG32600:3_CG32600:4;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20090	14,265,299 – 14,265,404	-	3	105	84.19	-2.72	0.68	0.941224
14595	dm3.chrX	14,282,771 – 14,282,966	- - - - - - - -	20095	14,282,874 – 14,282,966	-	6	118	82.21	-2.60	0.66	0.966001
14598	dm3.chrX	14,306,890 – 14,306,982	- - - intron="intron;ID=intron_CG32600:5_CG32600:6;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20098	14,306,890 – 14,306,982	-	7	112	69.13	-1.26	0.68	0.965746
14599	dm3.chrX	14,308,165 – 14,308,241	- - - intron="intron;ID=intron_CG32600:5_CG32600:6;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20099	14,308,165 – 14,308,241	+	5	82	77.81	-2.41	0.59	0.972066
14600	dm3.chrX	14,318,175 – 14,318,279	- - - intron="intron;ID=intron_CG32600:5_CG32600:6;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20102	14,318,175 – 14,318,279	-	9	115	82.67	-3.05	0.57	0.988259
14601	dm3.chrX	14,326,301 – 14,326,492	- - - intron="intron;ID=intron_CG32600:6_CG32600:7;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20103	14,326,301 – 14,326,404	+	6	103	91.97	-2.62	0.79	0.951665
				20104	14,326,301 – 14,326,404	-	6	103	91.97	-2.50	0.77	0.914747
				20105	14,326,313 – 14,326,416	+	6	103	91.33	-2.61	0.74	0.922739
14604	dm3.chrX	14,336,034 – 14,336,171	- - - intron="intron;ID=intron_CG32600:6_CG32600:7;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20110	14,336,034 – 14,336,171	-	5	140	69.05	-1.63	0.58	0.975160
14608	dm3.chrX	14,368,442 – 14,368,501	- - CDS="CDS;ID=CDS_CG9411:3_911;Name=CG9411-cds;Parent=FBtr0073916;parent_type=mRNA" - - - - -	20114	14,368,442 – 14,368,501	+	6	65	60.24	-1.31	0.41	0.912263
14609	dm3.chrX	14,375,900 – 14,376,009	- - - - - - - -	20115	14,375,900 – 14,376,009	+	6	118	65.10	-3.31	0.37	0.998872
14611	dm3.chrX	14,381,771 – 14,381,864	- - - - - - - -	20118	14,381,771 – 14,381,864	-	5	106	70.05	-2.28	0.53	0.990310
14615	dm3.chrX	14,397,899 – 14,398,007	- - - - - - - -	20124	14,397,899 – 14,398,007	-	5	111	71.79	-1.87	0.65	0.986513
14616	dm3.chrX	14,400,586 – 14,400,727	- - - - - - - -	20127	14,400,626 – 14,400,727	-	4	118	76.26	-2.31	0.61	0.945431
14619	dm3.chrX	14,412,360 – 14,412,459	- - - - - - - -	20130	14,412,360 – 14,412,459	+	6	112	63.44	-1.38	0.48	0.971600
14620	dm3.chrX	14,416,331 – 14,416,423	- - - - - - - -	20131	14,416,331 – 14,416,423	+	6	104	71.41	-3.46	0.72	0.999717
14620	dm3.chrX	14,416,331 – 14,416,423	- - - - - - - -	20132	14,416,331 – 14,416,423	-	6	104	71.41	-1.94	0.63	0.986837
14621	dm3.chrX	14,422,146 – 14,422,297	- - - - - - - -	20133	14,422,146 – 14,422,297	+	4	154	97.38	-1.90	0.94	0.902343
14621	dm3.chrX	14,422,146 – 14,422,297	- - - - - - - -	20134	14,422,146 – 14,422,297	-	4	154	97.38	-1.98	0.96	0.943231
14622	dm3.chrX	14,426,125 – 14,426,243	- - - - - - - -	20135	14,426,125 – 14,426,243	-	4	118	89.80	-2.09	0.90	0.954455
14624	dm3.chrX	14,433,877 – 14,434,021	- - - - - - - -	20138	14,433,877 – 14,434,021	-	5	150	80.90	-2.31	0.68	0.965013
14627	dm3.chrX	14,459,220 – 14,459,336	- - - - - - - -	20142	14,459,220 – 14,459,336	-	9	138	75.13	-1.34	0.69	0.916197
14629	dm3.chrX	14,468,385 – 14,468,500	- - - - - - - -	20145	14,468,408 – 14,468,500	+	5	96	67.96	-1.64	0.60	0.975110
14631	dm3.chrX	14,481,818 – 14,481,948	- - - intron="intron;ID=intron_FBgn0030574:5_FBgn0030574:4;Name=CG9413-in;Parent=FBtr0073943,FBtr0073944;parent_type=mRNA" - - - -	20147	14,481,818 – 14,481,948	+	5	142	63.74	-1.59	0.51	0.973498
14631	dm3.chrX	14,481,818 – 14,481,948		20148	14,481,818 – 14,481,948	-	5	142	63.74	-2.67	0.53	0.999322
14638	dm3.chrX	14,511,697 – 14,511,752	- - - intron="intron;ID=intron_FBgn0015773:6_FBgn0015773:5;Name=NetA-in;Parent=FBtr0073942;parent_type=mRNA" - - - -	20156	14,511,697 – 14,511,752	+	7	57	75.06	-1.66	0.72	0.978726
14640	dm3.chrX	14,519,854 – 14,519,944	- - - intron="intron;ID=intron_FBgn0015773:7_FBgn0015773:6;Name=NetA-in;Parent=FBtr0073942;parent_type=mRNA" - - - -	20158	14,519,854 – 14,519,944	+	7	91	80.41	-2.28	0.78	0.989591
14641	dm3.chrX	14,536,532 – 14,536,583	- - - intron="intron;ID=intron_FBgn0015773:7_FBgn0015773:6;Name=NetA-in;Parent=FBtr0073942;parent_type=mRNA" - - - -	20159	14,536,532 – 14,536,583	+	5	51	99.22	-2.14	0.98	0.968008
14641	dm3.chrX	14,536,532 – 14,536,583		20160	14,536,532 – 14,536,583	-	5	51	99.22	-2.99	1.01	0.996396
14647	dm3.chrX	14,576,052 – 14,576,144	- - - - - - - -	20167	14,576,052 – 14,576,144	+	3	92	97.10	-1.87	0.98	0.948079
14651	dm3.chrX	14,590,776 – 14,590,910	- - - intron="intron;ID=intron_FBgn0015774:7_FBgn0015774:6;Name=NetB-in;Parent=FBtr0073940,FBtr0302016,FBtr0302017,FBtr0302018,FBtr0304874,FBtr0304875;parent_type=mRNA" - - - -	20171	14,590,776 – 14,590,866	-	5	107	64.88	-1.23	0.63	0.970997
14653	dm3.chrX	14,593,243 – 14,593,341	- - - intron="intron;ID=intron_FBgn0015774:7_FBgn0015774:6;Name=NetB-in;Parent=FBtr0073940,FBtr0302016,FBtr0302017,FBtr0302018,FBtr0304874,FBtr0304875;parent_type=mRNA" - - - -	20174	14,593,243 – 14,593,341	+	5	117	90.15	-2.01	0.93	0.964216
14653	dm3.chrX	14,593,243 – 14,593,341		20175	14,593,243 – 14,593,341	-	5	117	90.15	-1.86	0.95	0.960518
14657	dm3.chrX	14,624,443 – 14,624,550	- - - - - - - -	20180	14,624,443 – 14,624,550	-	6	114	69.29	-2.35	0.53	0.997161
14658	dm3.chrX	14,626,831 – 14,626,941	- - - - - - - -	20181	14,626,831 – 14,626,941	+	6	120	70.68	-2.12	0.74	0.995775
14659	dm3.chrX	14,627,047 – 14,627,154	- - - - - - - -	20182	14,627,047 – 14,627,154	-	4	108	97.98	-2.14	0.96	0.959187
14660	dm3.chrX	14,631,119 – 14,631,211	- - - - - - - -	20183	14,631,119 – 14,631,211	-	11	112	77.56	-2.91	0.57	0.996332
14663	dm3.chrX	14,643,444 – 14,643,501	- - - - - - - -	20186	14,643,444 – 14,643,501	-	6	57	81.40	-2.62	0.68	0.989593
14669	dm3.chrX	14,686,057 – 14,686,170	- - CDS="CDS;ID=CDS_FBgn0003301:4_1031;Name=rut-cds;Parent=FBtr0305581;parent_type=mRNA" - - - - -	20197	14,686,065 – 14,686,170	-	14	120	77.58	-2.36	0.45	0.938942
14671	dm3.chrX	14,699,603 – 14,699,708	- - - intron="intron;ID=intron_FBgn0003301:19_FBgn0003301:18;Name=rut-in;Parent=FBtr0073992,FBtr0305581;parent_type=mRNA" - - - -	20199	14,699,603 – 14,699,708	-	3	105	83.71	-2.60	0.74	0.956969
14672	dm3.chrX	14,703,480 – 14,703,600	- - - intron="intron;ID=intron_FBgn0003301:19_FBgn0003301:18;Name=rut-in;Parent=FBtr0073992,FBtr0305581;parent_type=mRNA" - - - -	20201	14,703,480 – 14,703,600	-	5	120	89.03	-1.70	0.90	0.905666
14675	dm3.chrX	14,747,764 – 14,747,872	- - - - - - - -	20204	14,747,764 – 14,747,862	-	7	108	58.26	-1.44	0.37	0.954622
14678	dm3.chrX	14,777,993 – 14,778,083	- - - - - - - -	20208	14,777,993 – 14,778,083	+	5	90	96.44	-2.32	0.91	0.951068
14679	dm3.chrX	14,786,599 – 14,786,731	- - - intron="intron;ID=intron_FBgn0030592:3_FBgn0030592:2;Name=CG9514-in;Parent=FBtr0073980;parent_type=mRNA" - - - -	20209	14,786,599 – 14,786,695	-	5	96	83.74	-2.50	0.66	0.948500
14679	dm3.chrX	14,786,599 – 14,786,731		20210	14,786,635 – 14,786,731	-	5	100	93.56	-2.96	0.83	0.981255
14680	dm3.chrX	14,786,869 – 14,786,977	- - - intron="intron;ID=intron_FBgn0030592:3_FBgn0030592:2;Name=CG9514-in;Parent=FBtr0073980;parent_type=mRNA" - - - -	20211	14,786,869 – 14,786,977	+	5	111	85.05	-2.16	0.75	0.923253
14682	dm3.chrX	14,792,194 – 14,792,301	- - - - - - - -	20213	14,792,194 – 14,792,301	-	5	119	92.78	-3.38	0.80	0.991947
14683	dm3.chrX	14,792,902 – 14,792,963	- - - - - - - -	20214	14,792,902 – 14,792,963	+	8	61	86.66	-2.73	0.70	0.974811
14684	dm3.chrX	14,793,590 – 14,793,756	- - - - - - - -	20217	14,793,628 – 14,793,729	-	8	117	69.84	-1.38	0.51	0.937984
14684	dm3.chrX	14,793,590 – 14,793,756	- - - - - - - -	20218	14,793,650 – 14,793,756	-	6	114	86.56	-2.10	0.76	0.908955
14686	dm3.chrX	14,840,789 – 14,840,909	- - - intron="intron;ID=intron_FBgn0027601:6_FBgn0027601:4;Name=CG9009-in;Parent=FBtr0303294;parent_type=mRNA" - - - -	20220	14,840,789 – 14,840,909	-	5	120	69.70	-2.46	0.48	0.990206
14697	dm3.chrX	14,885,078 – 14,885,153	- - - intron="intron;ID=intron_FBgn0000535:6_FBgn0000535:7;Name=eag-in;Parent=FBtr0111009,FBtr0073955,FBtr0303286;parent_type=mRNA" - - - -	20232	14,885,078 – 14,885,153	-	6	80	73.73	-1.50	0.61	0.935087
14700	dm3.chrX	14,905,559 – 14,905,649	- - - - - - - -	20236	14,905,559 – 14,905,649	-	11	96	65.23	-0.90	0.46	0.915672
14703	dm3.chrX	14,923,702 – 14,923,841	- - - intron="intron;ID=intron_CG32594:1_CG32594:2;Name=be-in;Parent=FBtr0073956,FBtr0073957;parent_type=mRNA" - - - -	20240	14,923,702 – 14,923,841	+	5	145	62.77	-2.06	0.39	0.949659
14708	dm3.chrX	14,955,628 – 14,955,730	- - - intron="intron;ID=intron_FBgn0030600:23_FBgn0030600:22;Name=hiw-in;Parent=FBtr0073970;parent_type=mRNA" - - - -	20245	14,955,628 – 14,955,730	-	6	119	75.11	-1.82	0.60	0.921368
14709	dm3.chrX	14,959,350 – 14,959,445	- - - - - - - -	20247	14,959,350 – 14,959,445	-	4	95	93.86	-3.29	0.86	0.993055
14710	dm3.chrX	14,972,146 – 14,972,241	- - - - - - - -	20248	14,972,146 – 14,972,241	+	4	110	78.29	-2.26	0.67	0.962498
14712	dm3.chrX	14,984,730 – 14,984,840	- - - - - - - -	20250	14,984,730 – 14,984,840	-	6	120	81.58	-3.39	0.78	0.998777
14714	dm3.chrX	14,986,344 – 14,986,514	- - - - - - - -	20252	14,986,344 – 14,986,458	+	6	120	68.42	-3.13	0.50	0.999598
				20253	14,986,344 – 14,986,458	-	6	120	68.42	-2.00	0.40	0.939498
				20254	14,986,381 – 14,986,488	+	5	120	85.29	-3.79	0.68	0.997674
				20255	14,986,381 – 14,986,488	-	5	120	85.29	-2.69	0.64	0.934274
				20256	14,986,418 – 14,986,514	+	6	109	72.45	-2.22	0.51	0.978491
14715	dm3.chrX	14,990,339 – 14,990,433	- - - intron="intron;ID=intron_FBgn0030613:8_FBgn0030613:11;Name=rab3-GEF-in;Parent=FBtr0073993;parent_type=mRNA" - - - -	20257	14,990,339 – 14,990,433	+	6	98	72.57	-2.29	0.81	0.997792
14718	dm3.chrX	15,025,983 – 15,026,138	- - - intron="intron;ID=intron_CG33968:2_CG33968:3;Name=drd-in;Parent=FBtr0100009;parent_type=mRNA" - - - -	20261	15,025,983 – 15,026,138	-	7	157	78.77	-2.44	0.52	0.947715
14721	dm3.chrX	15,072,576 – 15,072,717	- - CDS="CDS;ID=CDS_FBgn0030618:1_908;Name=CG15028-cds;Parent=FBtr0073996;parent_type=mRNA" - - - - -	20264	15,072,576 – 15,072,717	+	6	149	73.22	-1.61	0.59	0.936665
14724	dm3.chrX	15,080,933 – 15,081,024	- - CDS="CDS;ID=CDS_CG15029:4_896;Name=CG15029-cds;Parent=FBtr0073998;parent_type=mRNA" - - - - -	20267	15,080,933 – 15,081,024	-	5	100	69.56	-1.70	0.57	0.952643
14726	dm3.chrX	15,092,133 – 15,092,233	- - - - - - - -	20269	15,092,133 – 15,092,233	+	6	120	60.69	-1.69	0.39	0.941569
14727	dm3.chrX	15,106,358 – 15,106,448	- - - - - - - -	20271	15,106,358 – 15,106,448	-	6	106	74.35	-1.96	0.57	0.950655
14729	dm3.chrX	15,112,265 – 15,112,367	- - - - - - - -	20273	15,112,265 – 15,112,367	-	4	102	85.71	-2.50	0.72	0.938686
14730	dm3.chrX	15,125,589 – 15,125,748	- - - - - - - -	20274	15,125,589 – 15,125,748	-	3	174	66.86	-2.30	0.48	0.941002
14731	dm3.chrX	15,128,121 – 15,128,225	- - - - - - - -	20275	15,128,121 – 15,128,225	+	7	115	76.66	-2.11	0.67	0.988933
14732	dm3.chrX	15,133,404 – 15,133,522	- - - - - - - -	20277	15,133,404 – 15,133,522	-	6	121	78.94	-2.11	0.73	0.983437
14735	dm3.chrX	15,156,127 – 15,156,230	- - - - - - - -	20281	15,156,127 – 15,156,230	-	11	112	70.15	-1.43	0.60	0.990362
14737	dm3.chrX	15,161,105 – 15,161,182	- - - - - - - -	20284	15,161,105 – 15,161,182	+	10	81	70.42	-1.89	0.49	0.977590
14740	dm3.chrX	15,167,700 – 15,167,786	- - - - - - - -	20289	15,167,700 – 15,167,786	-	5	91	78.56	-2.13	0.72	0.972857
14745	dm3.chrX	15,185,598 – 15,185,690	- - - - - - - -	20294	15,185,598 – 15,185,690	-	4	92	72.73	-1.54	0.73	0.923633
14746	dm3.chrX	15,192,623 – 15,192,746	- - - - - - - -	20295	15,192,623 – 15,192,746	-	6	129	76.83	-1.59	0.67	0.904545
14748	dm3.chrX	15,195,939 – 15,196,068	- - - intron="intron;ID=intron_FBgn0261703:2_FBgn0261703:3;Name=gce-in;Parent=FBtr0303199;parent_type=mRNA" - - - -	20297	15,195,939 – 15,196,068	-	8	152	74.32	-2.09	0.49	0.917171
14751	dm3.chrX	15,236,138 – 15,236,225	- - - - - - - -	20300	15,236,138 – 15,236,225	+	5	89	65.00	-4.10	0.42	0.999914
14751	dm3.chrX	15,236,138 – 15,236,225	- - - - - - - -	20301	15,236,138 – 15,236,225	-	5	89	65.00	-2.52	0.30	0.952958
14752	dm3.chrX	15,239,904 – 15,239,957	- - - intron="intron;ID=intron_CG6227:2_CG6227:3;Name=CG6227-in;Parent=FBtr0074011;parent_type=mRNA" - - - -	20302	15,239,904 – 15,239,957	+	3	63	54.75	-1.90	0.42	0.939191
14755	dm3.chrX	15,272,231 – 15,272,473	- - CDS="CDS;ID=CDS_FBgn0000028:11_955;Name=acj6-cds;Parent=FBtr0290063,FBtr0290064,FBtr0305195;parent_type=mRNA" - - - - -	20308	15,272,423 – 15,272,473	+	9	57	81.13	-2.28	0.70	0.968419
14759	dm3.chrX	15,294,966 – 15,295,056	- - - intron="intron;ID=intron_CG9176:15_CG9176:17;Name=cngl-in;Parent=FBtr0089294,FBtr0089293;parent_type=mRNA" - - - -	20316	15,294,966 – 15,295,056	-	7	97	70.45	-1.25	0.64	0.936772
14762	dm3.chrX	15,321,116 – 15,321,208	- - - intron="intron;ID=intron_CG18210:1_CG18210:2;Name=CG18210-in;Parent=FBtr0074081;parent_type=mRNA" - - - -	20319	15,321,116 – 15,321,208	-	6	102	71.23	-1.44	0.55	0.909186
14768	dm3.chrX	15,346,514 – 15,346,582	- - - - - - - -	20325	15,346,514 – 15,346,582	-	6	68	70.54	-1.33	0.71	0.980401
14771	dm3.chrX	15,370,076 – 15,370,196	- - - - - - - -	20329	15,370,076 – 15,370,196	-	4	120	79.03	-2.34	0.64	0.945136
14777	dm3.chrX	15,380,891 – 15,380,985	- - - - - - - -	20336	15,380,891 – 15,380,985	+	3	101	92.57	-2.56	1.00	0.994717
14778	dm3.chrX	15,381,138 – 15,381,189	- - - - - - - -	20337	15,381,138 – 15,381,189	-	3	51	88.24	-2.31	0.94	0.985646
14784	dm3.chrX	15,417,907 – 15,417,999	- - - - - - - -	20345	15,417,907 – 15,417,999	+	7	112	72.27	-2.91	0.43	0.983208
14784	dm3.chrX	15,417,907 – 15,417,999	- - - - - - - -	20346	15,417,907 – 15,417,999	-	7	112	72.27	-3.70	0.61	0.999648
14789	dm3.chrX	15,442,957 – 15,443,090	- - - - - - - -	20354	15,442,957 – 15,443,090	-	5	154	60.57	-2.80	0.41	0.998344
14790	dm3.chrX	15,444,641 – 15,444,767	- - - - - - - -	20355	15,444,641 – 15,444,749	-	5	108	96.30	-2.14	0.91	0.925198
14792	dm3.chrX	15,458,310 – 15,458,408	- - - - - - - -	20359	15,458,310 – 15,458,408	-	6	98	77.25	-1.72	0.62	0.920128
14793	dm3.chrX	15,459,455 – 15,459,546	- - - - - - - -	20360	15,459,455 – 15,459,546	-	5	100	85.35	-1.93	0.82	0.923703
14795	dm3.chrX	15,492,808 – 15,492,873	- - - - - - - -	20362	15,492,808 – 15,492,873	-	8	78	59.02	-1.78	0.44	0.995201
14797	dm3.chrX	15,511,220 – 15,511,313	- - - intron="intron;ID=intron_CG9224:1_CG9224:2;Name=sog-in;Parent=FBtr0074063;parent_type=mRNA" - - - -	20364	15,511,220 – 15,511,313	+	5	102	73.10	-2.48	0.52	0.977731
14797	dm3.chrX	15,511,220 – 15,511,313		20365	15,511,220 – 15,511,313	-	5	102	73.10	-3.10	0.61	0.998572
14798	dm3.chrX	15,516,568 – 15,516,647	- - - intron="intron;ID=intron_CG9224:1_CG9224:2;Name=sog-in;Parent=FBtr0074063;parent_type=mRNA" - - - -	20366	15,516,568 – 15,516,647	-	11	79	79.48	-1.83	0.60	0.938914
14799	dm3.chrX	15,534,775 – 15,534,876	- - - - - - - -	20367	15,534,775 – 15,534,876	+	5	101	96.63	-1.60	0.99	0.928019
14801	dm3.chrX	15,568,894 – 15,569,004	- - - - - - - -	20370	15,568,894 – 15,569,004	+	6	120	82.89	-2.69	0.59	0.943234
14803	dm3.chrX	15,575,336 – 15,575,449	- - - - - - - -	20374	15,575,336 – 15,575,449	-	4	114	59.45	-2.24	0.67	0.999417
14804	dm3.chrX	15,586,613 – 15,586,707	- - - - - - - -	20376	15,586,613 – 15,586,707	-	7	101	72.15	-1.91	0.47	0.911403
14806	dm3.chrX	15,591,870 – 15,591,971	- - - intron="intron;ID=intron_CG8128:1_CG8128:2;Name=CG8128-in;Parent=FBtr0074053;parent_type=mRNA" - - - -	20378	15,591,870 – 15,591,971	-	6	117	77.02	-1.65	0.69	0.917624
14811	dm3.chrX	15,653,851 – 15,653,941	- - - - - - - -	20383	15,653,851 – 15,653,941	+	5	101	70.37	-1.68	0.63	0.959380
14812	dm3.chrX	15,654,415 – 15,654,557	- - - intron="intron;ID=intron_CG8948:1_CG8948:18;Name=Graf-in;Parent=FBtr0074198;parent_type=mRNA" - - - -	20385	15,654,432 – 15,654,548	+	6	120	79.48	-2.52	0.58	0.978114
				20387	15,654,441 – 15,654,557	+	6	117	81.55	-2.34	0.67	0.972736
				20388	15,654,441 – 15,654,557	-	6	117	81.55	-1.91	0.72	0.936944
14813	dm3.chrX	15,656,716 – 15,656,857	- - - - - - - -	20390	15,656,716 – 15,656,819	-	4	108	65.62	-1.77	0.49	0.949114
14813	dm3.chrX	15,656,716 – 15,656,857	- - - - - - - -	20391	15,656,750 – 15,656,857	+	4	113	64.66	-1.52	0.60	0.979406
14814	dm3.chrX	15,680,632 – 15,680,790	- - - intron="intron;ID=intron_FBgn0030692:1_FBgn0030692:2;Name=mRpS30-in;Parent=FBtr0074094;parent_type=mRNA" - - - -	20394	15,680,632 – 15,680,750	-	5	120	85.61	-2.30	0.75	0.939450
14814	dm3.chrX	15,680,632 – 15,680,790		20396	15,680,670 – 15,680,790	-	5	120	83.83	-3.10	0.70	0.993669
14815	dm3.chrX	15,683,439 – 15,683,539	- - - intron="intron;ID=intron_CG8497:13_CG8497:2;Name=Rhp-in;Parent=FBtr0074096;parent_type=mRNA" - - - -	20397	15,683,439 – 15,683,539	+	5	116	85.32	-2.68	0.87	0.993084
14818	dm3.chrX	15,692,700 – 15,692,801	- - - intron="intron;ID=intron_FBgn0052581:4_FBgn0052581:3;Name=CG32581-in;Parent=FBtr0074184;parent_type=mRNA" - - - -	20401	15,692,700 – 15,692,801	-	6	116	71.10	-2.10	0.46	0.947674
14821	dm3.chrX	15,698,221 – 15,698,382	- - - - - - - -	20408	15,698,221 – 15,698,382	+	5	171	76.46	-2.47	0.49	0.923489
14821	dm3.chrX	15,698,221 – 15,698,382	- - - - - - - -	20409	15,698,221 – 15,698,382	-	5	171	76.46	-2.78	0.45	0.949075
14822	dm3.chrX	15,699,082 – 15,699,194	- - - - - - - -	20410	15,699,082 – 15,699,194	+	5	117	84.41	-2.33	0.69	0.903873
14831	dm3.chrX	15,716,494 – 15,716,654	- - - intron="intron;ID=intron_FBgn0003345:11_FBgn0003345:12;Name=sd-in;Parent=FBtr0074099,FBtr0074100,FBtr0074101,FBtr0112824,FBtr0112825,FBtr0112826,FBtr0112827,FBtr0301543,FBtr0301544;parent_type=mRNA" - - - -	20421	15,716,494 – 15,716,614	+	4	120	87.36	-2.85	0.64	0.925146
				20422	15,716,494 – 15,716,614	-	4	120	87.36	-3.71	0.70	0.996067
				20424	15,716,534 – 15,716,654	-	4	120	86.92	-4.34	0.77	0.999055
14833	dm3.chrX	15,740,795 – 15,740,946	- - - intron="intron;ID=intron_CG8578:5_CG8578:6;Name=CG8578-in;Parent=FBtr0074104;parent_type=mRNA" - - - -	20426	15,740,795 – 15,740,946	+	5	159	88.58	-2.17	0.95	0.985202
14836	dm3.chrX	15,755,004 – 15,755,107	- - - intron="intron;ID=intron_CG10545:4_CG10545:10;Name=Gbeta13F-in;Parent=FBtr0074111;parent_type=mRNA" - - - -	20429	15,755,004 – 15,755,107	-	6	107	75.96	-2.13	0.70	0.991703
14838	dm3.chrX	15,765,158 – 15,765,292	- - - intron="intron;ID=intron_FBgn0030701:4_FBgn0030701:5;Name=CG16952-in;Parent=FBtr0074116;parent_type=mRNA" - - - -	20432	15,765,186 – 15,765,292	+	6	113	79.66	-2.57	0.67	0.991112
14838	dm3.chrX	15,765,158 – 15,765,292		20433	15,765,186 – 15,765,292	-	6	113	79.66	-2.29	0.61	0.961077
14844	dm3.chrX	15,803,867 – 15,803,990	- - - - - - - -	20441	15,803,867 – 15,803,984	-	4	118	78.30	-2.93	0.59	0.989263
14844	dm3.chrX	15,803,867 – 15,803,990	- - - - - - - -	20442	15,803,873 – 15,803,990	-	4	118	77.30	-3.00	0.59	0.993142
14845	dm3.chrX	15,804,612 – 15,804,770	- - - - - - - -	20443	15,804,612 – 15,804,770	+	5	164	77.81	-2.66	0.52	0.967740
14848	dm3.chrX	15,815,293 – 15,815,413	- - - - - - - -	20447	15,815,293 – 15,815,413	+	4	120	78.21	-2.46	0.54	0.918228
14849	dm3.chrX	15,816,216 – 15,816,318	- - - intron="intron;ID=intron_FBgn0030707:1_FBgn0030707:3;Name=CG8916-in;Parent=FBtr0301232;parent_type=mRNA" - - - -	20449	15,816,218 – 15,816,318	-	5	100	82.88	-1.83	0.83	0.943772
14851	dm3.chrX	15,859,990 – 15,860,084	FBnoncoding="pre_miRNA;ID=FBtr0304254;Name=mir-927-RM;Parent=FBgn0262210;Alias=CR42917-RM;Dbxref=FlyBase_Annotation_IDs:CR42917-RM,miRBase:MI0005843" - - intron="intron;ID=intron_FBgn0259110:26_FBgn0259110:25;Name=mmd-in;Parent=FBtr0299534,FBtr0299535,FBtr0299536;parent_type=mRNA" "Rfam_10.0=RF00950;mir-927;AABU01002771.1/5147408-5147485\|6.8e-36" - - "mirBase_v16=dme-mir-927\|3.4e-41"	20451	15,859,990 – 15,860,084	+	14	96	76.17	-4.82	0.81	0.999711
14851	dm3.chrX	15,859,990 – 15,860,084		20452	15,859,990 – 15,860,084	-	14	96	76.17	-4.08	0.88	0.999450
14853	dm3.chrX	15,876,565 – 15,876,681	- - - - - - - -	20454	15,876,565 – 15,876,681	+	5	120	92.53	-2.41	0.81	0.914255
14853	dm3.chrX	15,876,565 – 15,876,681	- - - - - - - -	20455	15,876,565 – 15,876,681	-	5	120	92.53	-2.75	0.82	0.970035
14854	dm3.chrX	15,876,759 – 15,876,934	- - - - - - - -	20458	15,876,799 – 15,876,908	+	5	120	93.32	-2.67	0.80	0.938903
14854	dm3.chrX	15,876,759 – 15,876,934	- - - - - - - -	20459	15,876,833 – 15,876,934	+	5	120	86.26	-1.93	0.89	0.953091
14856	dm3.chrX	15,952,098 – 15,952,212	- - CDS="CDS;ID=CDS_CG32580:12_935;Name=Muc14A-cds;Parent=FBtr0074205;parent_type=mRNA" - - - - -	20461	15,952,098 – 15,952,212	-	5	120	81.47	-2.16	0.70	0.940124
14859	dm3.chrX	15,957,547 – 15,957,690	- - - - - - - -	20464	15,957,547 – 15,957,690	+	7	144	68.85	-2.10	0.45	0.981067
14864	dm3.chrX	15,980,494 – 15,980,567	- - - - - - - -	20472	15,980,494 – 15,980,567	+	6	73	70.41	-2.10	0.41	0.952344
14870	dm3.chrX	15,990,365 – 15,990,420	- - - intron="intron;ID=intron_FBgn0259700:4_FBgn0259700:3;Name=CG42354-in;Parent=FBtr0299949;parent_type=mRNA" - - - -	20478	15,990,365 – 15,990,420	-	3	55	91.30	-3.14	0.99	0.997814
14871	dm3.chrX	15,995,333 – 15,995,392	- - - intron="intron;ID=intron_FBgn0259700:7_FBgn0259700:6;Name=CG42354-in;Parent=FBtr0299951;parent_type=mRNA" - - - -	20479	15,995,333 – 15,995,392	+	5	60	94.44	-2.63	0.93	0.987875
14872	dm3.chrX	15,999,928 – 16,000,081	- - - - - - - -	20481	15,999,928 – 16,000,046	+	3	119	93.84	-2.62	0.90	0.978405
				20482	15,999,928 – 16,000,046	-	3	119	93.84	-3.34	0.86	0.992715
				20483	15,999,967 – 16,000,081	+	3	114	85.84	-2.11	0.89	0.962319
				20484	15,999,967 – 16,000,081	-	3	114	85.84	-3.69	0.88	0.998373
14880	dm3.chrX	16,035,936 – 16,036,088	- - - intron="intron;ID=intron_FBgn0042650:4_FBgn0042650:3;Name=disco-r-in;Parent=FBtr0074251;parent_type=mRNA" - - - -	20493	16,035,936 – 16,036,049	+	5	120	95.51	-2.43	1.01	0.993471
14880	dm3.chrX	16,035,936 – 16,036,088		20494	16,035,936 – 16,036,049	-	5	120	95.51	-2.48	1.00	0.993121
14881	dm3.chrX	16,036,673 – 16,036,766	- - - intron="intron;ID=intron_FBgn0042650:4_FBgn0042650:3;Name=disco-r-in;Parent=FBtr0074251;parent_type=mRNA" - - - -	20496	16,036,673 – 16,036,766	+	3	93	86.31	-2.02	0.88	0.939859
14882	dm3.chrX	16,036,999 – 16,037,075	- - - intron="intron;ID=intron_FBgn0042650:4_FBgn0042650:3;Name=disco-r-in;Parent=FBtr0074251;parent_type=mRNA" - - - -	20497	16,036,999 – 16,037,075	+	5	76	97.36	-3.10	0.99	0.996704
14885	dm3.chrX	16,061,815 – 16,061,994	- - - - - - - -	20501	16,061,815 – 16,061,928	+	4	115	79.34	-2.73	0.70	0.989410
14886	dm3.chrX	16,067,763 – 16,067,882	- - - - - - - -	20504	16,067,763 – 16,067,868	-	6	105	74.38	-1.31	0.74	0.935144
14887	dm3.chrX	16,068,315 – 16,068,409	- - - - - - - -	20506	16,068,315 – 16,068,409	-	11	111	70.07	-1.51	0.56	0.947571
14891	dm3.chrX	16,085,259 – 16,085,375	FBnoncoding="pre_miRNA;ID=FBtr0304408;Name=mir-985-RM;Parent=FBgn0262283;Alias=CR42990-RM;Dbxref=FlyBase_Annotation_IDs:CR42990-RM,miRBase:MI0005844" - - - - - - "mirBase_v16=dme-mir-985\|4.6e-44"	20513	16,085,259 – 16,085,375	+	5	116	80.68	-4.01	0.69	0.999310
14891	dm3.chrX	16,085,259 – 16,085,375		20514	16,085,259 – 16,085,375	-	5	116	80.68	-4.60	0.78	0.999593
14894	dm3.chrX	16,124,664 – 16,124,729	- - - - - - - -	20518	16,124,664 – 16,124,729	+	3	65	57.95	-0.97	0.77	0.973565
14894	dm3.chrX	16,124,664 – 16,124,729	- - - - - - - -	20519	16,124,664 – 16,124,729	-	3	65	57.95	-1.30	0.55	0.946643
14898	dm3.chrX	16,148,700 – 16,148,915	FBnoncoding="snRNA;ID=FBtr0074208;Name=snRNA:U2:14B-RA;Parent=FBgn0003920;Dbxref=FlyBase_Annotation_IDs:CR32913-RA,REFSEQ:NR_002130;score_text=Weakly" - - - "Rfam_10.0=RF00004;U2;AANI01017247.1/37186-37381\|2.1e-87" "Noncode_2.0=n356_u336_AE003501_snRNA_Drosophila\|3e-105" "unique_Noncode_2.0=u336_snRNA_Drosophila\|2e-105" -	20523	16,148,700 – 16,148,820	+	13	120	96.88	-3.39	1.01	0.998384
				20524	16,148,700 – 16,148,820	-	13	120	96.88	-5.66	0.95	0.998418
				20525	16,148,740 – 16,148,860	+	13	120	95.56	-2.68	1.03	0.997103
				20526	16,148,740 – 16,148,860	-	13	120	95.56	-5.02	0.91	0.998956
14902	dm3.chrX	16,172,827 – 16,172,986	- - - intron="intron;ID=intron_CG3525:1_CG3525:2;Name=eas-in;Parent=FBtr0074215,FBtr0074211;parent_type=mRNA" - - - -	20532	16,172,827 – 16,172,946	+	5	120	91.83	-2.36	0.87	0.961239
14902	dm3.chrX	16,172,827 – 16,172,986		20533	16,172,867 – 16,172,986	+	5	120	88.83	-2.60	0.85	0.983602
14907	dm3.chrX	16,200,248 – 16,200,394	- - - - - - - -	20538	16,200,248 – 16,200,363	-	6	116	71.87	-1.29	0.65	0.926884
14907	dm3.chrX	16,200,248 – 16,200,394	- - - - - - - -	20539	16,200,288 – 16,200,394	-	6	108	86.31	-2.52	0.70	0.951019
14908	dm3.chrX	16,214,380 – 16,214,473	- - - - - - - -	20540	16,214,380 – 16,214,473	+	5	96	93.10	-1.68	0.97	0.939909
14912	dm3.chrX	16,243,361 – 16,243,425	- - - - - - - -	20545	16,243,361 – 16,243,425	+	3	64	57.29	-0.92	0.77	0.972692
14912	dm3.chrX	16,243,361 – 16,243,425	- - - - - - - -	20546	16,243,361 – 16,243,425	-	3	64	57.29	-1.31	0.55	0.956033
14913	dm3.chrX	16,267,442 – 16,267,533	- - - intron="intron;ID=intron_FBgn0004598:5_FBgn0004598:6;Name=Fur2-in;Parent=FBtr0074265,FBtr0074266;parent_type=mRNA" - - - -	20547	16,267,442 – 16,267,533	-	5	99	86.93	-2.18	0.78	0.914064
14914	dm3.chrX	16,267,726 – 16,267,897	- - - intron="intron;ID=intron_FBgn0004598:5_FBgn0004598:6;Name=Fur2-in;Parent=FBtr0074265,FBtr0074266;parent_type=mRNA" - - - -	20549	16,267,795 – 16,267,897	-	6	115	67.93	-1.92	0.44	0.960084
14921	dm3.chrX	16,324,455 – 16,324,584	- - - intron="intron;ID=intron_FBgn0026575:3_FBgn0026575:4;Name=hang-in;Parent=FBtr0290069;parent_type=mRNA" - - - -	20558	16,324,455 – 16,324,548	+	5	93	95.81	-1.82	0.94	0.906811
14924	dm3.chrX	16,362,551 – 16,362,644	- - - intron="intron;ID=intron_FBgn0260993:3_FBgn0260993:2;Name=para-in;Parent=FBtr0074298,FBtr0111022,FBtr0111023,FBtr0290121,FBtr0303655,FBtr0303656,FBtr0303657,FBtr0303658,FBtr0303659,FBtr0303660,FBtr0303661,FBtr0303662,FBtr0303663,FBtr0303664,FBtr0303665,FBtr0303666,FBtr0303667,FBtr0303668,FBtr0303669,FBtr0303670,FBtr0303671,FBtr0303672,FBtr0303673,FBtr0303674,FBtr0303675,FBtr0303676,FBtr0303677,FBtr0303678,FBtr0303679,FBtr0303680,FBtr0303681,FBtr0303682,FBtr0303683,FBtr0303684,FBtr0303685,FBtr0303686,FBtr0303687,FBtr0303688,FBtr0303689,FBtr0303690,FBtr0303691,FBtr0303692,FBtr0303693,FBtr0303694,FBtr0303695,FBtr0303696,FBtr0303697,FBtr0303698,FBtr0303699,FBtr0303700,FBtr0303701,FBtr0303702,FBtr0303703,FBtr0303704,FBtr0303705,FBtr0303706,FBtr0303707;parent_type=mRNA" - - - -	20562	16,362,551 – 16,362,644	-	11	108	62.30	-2.25	0.36	0.993016
14925	dm3.chrX	16,375,989 – 16,376,089	- - - intron="intron;ID=intron_FBgn0260993:11_FBgn0260993:9;Name=para-in;Parent=FBtr0290121,FBtr0303674,FBtr0303675,FBtr0303686,FBtr0303688,FBtr0303690,FBtr0303694,FBtr0303701,FBtr0303702,FBtr0303703,FBtr0303707;parent_type=mRNA" - - - -	20563	16,375,989 – 16,376,089	+	11	103	61.55	-1.43	0.38	0.972205
14925	dm3.chrX	16,375,989 – 16,376,089		20564	16,375,989 – 16,376,089	-	11	103	61.55	-2.65	0.50	0.999920
14928	dm3.chrX	16,393,876 – 16,393,966	- - - intron="intron;ID=intron_FBgn0260993:26_FBgn0260993:25;Name=para-in;Parent=FBtr0074298,FBtr0111022,FBtr0111023,FBtr0290121,FBtr0303655,FBtr0303656,FBtr0303658,FBtr0303660,FBtr0303661,FBtr0303663,FBtr0303666,FBtr0303667,FBtr0303670,FBtr0303671,FBtr0303674,FBtr0303675,FBtr0303676,FBtr0303677,FBtr0303678,FBtr0303679,FBtr0303681,FBtr0303682,FBtr0303684,FBtr0303686,FBtr0303687,FBtr0303689,FBtr0303690,FBtr0303691,FBtr0303695,FBtr0303700,FBtr0303701,FBtr0303703,FBtr0303704,FBtr0303706,FBtr0303707;parent_type=mRNA" - - - -	20567	16,393,876 – 16,393,966	+	5	93	96.89	-1.67	1.06	0.984231
14929	dm3.chrX	16,398,221 – 16,398,333	- - CDS="CDS;ID=CDS_FBgn0260993:28_955;Name=para-cds;Parent=FBtr0303661,FBtr0303667,FBtr0303676,FBtr0303677,FBtr0303678,FBtr0303679,FBtr0303689;parent_type=mRNA" - - - - -	20569	16,398,221 – 16,398,333	-	9	112	87.95	-2.12	0.82	0.950940
14930	dm3.chrX	16,399,226 – 16,399,351	- - - intron="intron;ID=intron_FBgn0260993:29_FBgn0260993:28;Name=para-in;Parent=FBtr0303661,FBtr0303667,FBtr0303676,FBtr0303677,FBtr0303678,FBtr0303679,FBtr0303689,FBtr0303699,FBtr0303705;parent_type=mRNA" - - - -	20570	16,399,226 – 16,399,351	-	8	129	83.60	-3.30	0.73	0.997402
14931	dm3.chrX	16,399,534 – 16,399,633	- - CDS="CDS;ID=CDS_FBgn0260993:29_1001;Name=para-cds;Parent=FBtr0303698;parent_type=mRNA" - - - - -	20571	16,399,534 – 16,399,633	+	15	120	88.11	-2.03	0.78	0.905629
14933	dm3.chrX	16,410,715 – 16,410,828	- - - intron="intron;ID=intron_FBgn0260993:35_FBgn0260993:34;Name=para-in;Parent=FBtr0074298,FBtr0111022,FBtr0111023,FBtr0303655,FBtr0303656,FBtr0303657,FBtr0303659,FBtr0303660,FBtr0303661,FBtr0303662,FBtr0303663,FBtr0303664,FBtr0303665,FBtr0303666,FBtr0303667,FBtr0303668,FBtr0303669,FBtr0303670,FBtr0303671,FBtr0303672,FBtr0303673,FBtr0303674,FBtr0303675,FBtr0303676,FBtr0303677,FBtr0303678,FBtr0303679,FBtr0303681,FBtr0303690,FBtr0303691,FBtr0303692,FBtr0303693;parent_type=mRNA" - - - -	20573	16,410,715 – 16,410,828	+	5	115	82.46	-2.67	0.67	0.978316
14933	dm3.chrX	16,410,715 – 16,410,828		20574	16,410,715 – 16,410,828	-	5	115	82.46	-2.91	0.73	0.993510
14939	dm3.chrX	16,477,562 – 16,477,695	- - - intron="intron;ID=intron_FBgn0030758:3_FBgn0030758:1;Name=CanA-14F-in;Parent=FBtr0305198;parent_type=mRNA" - - - -	20580	16,477,562 – 16,477,655	+	4	120	75.15	-2.18	0.61	0.929710
14942	dm3.chrX	16,479,626 – 16,479,728	- - - intron="intron;ID=intron_FBgn0030758:3_FBgn0030758:1;Name=CanA-14F-in;Parent=FBtr0305198;parent_type=mRNA" - - - -	20585	16,479,626 – 16,479,728	+	4	106	83.02	-2.37	0.78	0.973499
14942	dm3.chrX	16,479,626 – 16,479,728		20586	16,479,626 – 16,479,728	-	4	106	83.02	-2.59	0.65	0.945583
14943	dm3.chrX	16,481,973 – 16,482,138	- - - - - - - -	20587	16,481,973 – 16,482,138	+	5	166	82.86	-2.26	0.72	0.952391
14946	dm3.chrX	16,489,612 – 16,489,895	- - - - - - - -	20591	16,489,612 – 16,489,723	+	6	123	70.19	-2.52	0.43	0.985446
				20592	16,489,648 – 16,489,756	+	5	115	79.55	-2.59	0.63	0.981588
				20594	16,489,688 – 16,489,796	+	4	115	81.38	-2.30	0.74	0.957445
				20596	16,489,775 – 16,489,895	+	5	120	81.17	-2.30	0.65	0.922742
14949	dm3.chrX	16,530,618 – 16,530,723	- - - - - - - -	20600	16,530,618 – 16,530,723	-	6	110	72.56	-1.38	0.63	0.924592
14950	dm3.chrX	16,534,855 – 16,534,962	- - - - - - - -	20601	16,534,855 – 16,534,962	-	5	120	80.95	-2.10	0.76	0.954342
14951	dm3.chrX	16,549,565 – 16,549,666	- - - - - - - -	20602	16,549,565 – 16,549,666	-	5	108	89.02	-1.98	0.93	0.967988
14952	dm3.chrX	16,564,369 – 16,564,459	- - - intron="intron;ID=intron_FBgn0030769:4_FBgn0030769:3;Name=CG13012-in;Parent=FBtr0290216;parent_type=mRNA" - - - -	20603	16,564,369 – 16,564,459	+	3	90	88.15	-1.92	0.98	0.979422
14953	dm3.chrX	16,567,261 – 16,567,372	- - - - - - - -	20604	16,567,261 – 16,567,372	-	5	120	71.18	-2.41	0.50	0.984952
14955	dm3.chrX	16,568,501 – 16,568,605	- - - - - - - -	20606	16,568,501 – 16,568,595	+	5	97	68.87	-3.01	0.57	0.999548
				20607	16,568,501 – 16,568,595	-	5	97	68.87	-1.65	0.66	0.989996
				20608	16,568,501 – 16,568,605	+	6	115	71.73	-2.46	0.46	0.984273
14957	dm3.chrX	16,617,041 – 16,617,283	- - - intron="intron;ID=intron_CG32572:2_CG32572:3;Name=CG32572-in;Parent=FBtr0074324;parent_type=mRNA" - - - -	20612	16,617,142 – 16,617,257	+	5	120	91.11	-3.55	0.94	0.998319
14958	dm3.chrX	16,643,579 – 16,643,673	- - - intron="intron;ID=intron_CG9634:1_CG9634:2;Name=CG9634-in;Parent=FBtr0074359;parent_type=mRNA" - - - -	20614	16,643,579 – 16,643,673	+	5	94	79.16	-1.75	0.79	0.940727
14960	dm3.chrX	16,662,725 – 16,662,787	- - - intron="intron;ID=intron_FBgn0001250:9_FBgn0001250:8;Name=if-in;Parent=FBtr0074357,FBtr0301352,FBtr0301353,FBtr0301354;parent_type=mRNA" - - - -	20616	16,662,725 – 16,662,787	+	9	70	79.27	-1.66	0.70	0.903799
14961	dm3.chrX	16,671,992 – 16,672,119	- - - intron="intron;ID=intron_FBgn0001250:11_FBgn0001250:10;Name=if-in;Parent=FBtr0074357,FBtr0301352,FBtr0301353,FBtr0301354;parent_type=mRNA" - - - -	20618	16,671,992 – 16,672,083	-	9	117	69.85	-2.00	0.51	0.980427
14963	dm3.chrX	16,674,409 – 16,674,467	- - - intron="intron;ID=intron_FBgn0001250:12_FBgn0001250:11;Name=if-in;Parent=FBtr0301354;parent_type=mRNA" - - - -	20621	16,674,409 – 16,674,467	+	6	69	73.62	-2.27	0.59	0.986787
14964	dm3.chrX	16,675,146 – 16,675,236	- - - - - - - -	20622	16,675,146 – 16,675,236	-	5	98	87.81	-2.59	0.74	0.944049
14968	dm3.chrX	16,714,313 – 16,714,408	- - - intron="intron;ID=intron_FBgn0030796:4_FBgn0030796:5;Name=CG4829-in;Parent=FBtr0112994;parent_type=mRNA" - - - -	20628	16,714,313 – 16,714,408	-	6	99	72.32	-2.83	0.29	0.901157
14969	dm3.chrX	16,720,319 – 16,720,410	- - - - - - - -	20629	16,720,319 – 16,720,410	-	4	91	95.97	-2.57	0.96	0.988538
14974	dm3.chrX	16,736,340 – 16,736,447	- - CDS="CDS;ID=CDS_FBgn0024941:5_933;Name=RSG7-cds;Parent=FBtr0074350;parent_type=mRNA" - - - - -	20634	16,736,340 – 16,736,447	+	14	120	70.72	-1.59	0.50	0.949657
14974	dm3.chrX	16,736,340 – 16,736,447		20635	16,736,340 – 16,736,447	-	14	120	70.72	-1.80	0.55	0.988305
14979	dm3.chrX	16,770,545 – 16,770,599	- - - - - - - -	20642	16,770,545 – 16,770,599	-	11	66	67.37	-1.12	0.54	0.927383
14986	dm3.chrX	16,815,272 – 16,815,405	- - - intron="intron;ID=intron_CG4928:1_CG4928:2;Name=CG4928-in;Parent=FBtr0074344;parent_type=mRNA" - - - -	20650	16,815,304 – 16,815,405	+	12	110	70.15	-2.19	0.62	0.999236
14987	dm3.chrX	16,828,538 – 16,828,676	- - - intron="intron;ID=intron_CG4928:4_CG4928:5;Name=CG4928-in;Parent=FBtr0074344,FBtr0074345;parent_type=mRNA" - - - -	20651	16,828,538 – 16,828,641	+	5	110	78.30	-2.30	0.68	0.977246
14987	dm3.chrX	16,828,538 – 16,828,676		20652	16,828,538 – 16,828,641	-	5	110	78.30	-2.47	0.59	0.965726
14988	dm3.chrX	16,830,841 – 16,830,952	- - - - - - - -	20654	16,830,841 – 16,830,952	+	4	112	87.44	-2.60	0.84	0.983389
14989	dm3.chrX	16,836,551 – 16,836,622	- - CDS="CDS;ID=CDS_CG13001:1_929;Name=CG13001-cds;Parent=FBtr0074417;parent_type=mRNA" - - - - -	20655	16,836,551 – 16,836,622	+	11	72	87.28	-2.49	0.87	0.990939
14990	dm3.chrX	16,840,469 – 16,840,619	- - - - - - - -	20657	16,840,469 – 16,840,583	+	5	115	77.71	-2.24	0.59	0.955744
14991	dm3.chrX	16,840,775 – 16,840,838	- - - - - - - -	20659	16,840,775 – 16,840,838	+	6	66	81.04	-2.32	0.71	0.980705
14992	dm3.chrX	16,858,022 – 16,858,120	- - - intron="intron;ID=intron_CG9086:2_CG9086:3;Name=CG9086-in;Parent=FBtr0074415;parent_type=mRNA" - - - -	20660	16,858,022 – 16,858,120	+	7	106	62.59	-2.41	0.32	0.971864
14994	dm3.chrX	16,867,008 – 16,867,065	- - - intron="intron;ID=intron_FBgn0030810:3_FBgn0030810:2;Name=CG9059-in;Parent=FBtr0074413,FBtr0299584;parent_type=mRNA" - - - -	20662	16,867,008 – 16,867,065	-	13	59	88.57	-2.63	0.71	0.974120
14997	dm3.chrX	16,895,165 – 16,895,260	- - - - - - - -	20665	16,895,165 – 16,895,260	+	5	96	90.99	-2.93	0.86	0.991097
14998	dm3.chrX	16,897,604 – 16,897,694	- - - - - - - -	20666	16,897,604 – 16,897,694	+	7	102	57.19	-2.51	0.32	0.996642
15000	dm3.chrX	16,903,667 – 16,903,816	- - - - - - - -	20670	16,903,697 – 16,903,816	-	6	119	79.21	-1.89	0.66	0.934131
15002	dm3.chrX	16,907,029 – 16,907,103	- - - - - - - -	20672	16,907,029 – 16,907,103	-	6	92	69.32	-1.44	0.62	0.939182
15003	dm3.chrX	16,914,002 – 16,914,114	- - - - - - - -	20673	16,914,002 – 16,914,112	-	5	112	91.47	-2.45	0.80	0.927926
15009	dm3.chrX	16,947,948 – 16,948,048	- - - - - - - -	20681	16,947,948 – 16,948,048	-	7	106	58.88	-1.06	0.41	0.912556
15012	dm3.chrX	16,958,936 – 16,959,046	- - - - - - - -	20684	16,958,936 – 16,959,046	-	4	127	76.08	-2.23	0.67	0.950677
15014	dm3.chrX	16,970,947 – 16,971,012	- - CDS="CDS;ID=CDS_FBgn0030812:16_1021;Name=CG8949-cds;Parent=FBtr0074412,FBtr0304839,FBtr0304840;parent_type=mRNA" - - - - -	20686	16,970,947 – 16,971,012	+	13	73	81.19	-1.41	0.77	0.908631
15018	dm3.chrX	16,983,050 – 16,983,103	- - - - - - - -	20690	16,983,050 – 16,983,103	+	6	66	63.49	-0.94	0.78	0.967316
15019	dm3.chrX	16,987,843 – 16,987,948	- - - intron="intron;ID=intron_CG16700:1_CG16700:2;Name=CG16700-in;Parent=FBtr0074383;parent_type=mRNA" - - - -	20692	16,987,843 – 16,987,948	-	4	108	70.65	-1.94	0.56	0.953136
15025	dm3.chrX	17,039,414 – 17,039,911	FBnoncoding="snoRNA;ID=FBtr0113568;Name=snoRNA:Psi28S-1135f-RA;Parent=FBgn0083007;Dbxref=FlyBase_Annotation_IDs:CR34599-RA,REFSEQ:NR_003741;score_text=Weakly" - - intron="intron;ID=intron_CG8922:2_CG8922:3;Name=RpS5a-in;Parent=FBtr0074406;parent_type=mRNA" "Rfam_10.0=RF00540;snopsi18S-1854;AC012160.7/77140-77294\|1.5e-62" - - -	20698	17,039,414 – 17,039,515	-	12	115	72.49	-1.35	0.63	0.969761
				20699	17,039,486 – 17,039,583	+	11	108	54.15	-2.08	0.30	0.994059
				20700	17,039,486 – 17,039,583	-	11	108	54.15	-2.18	0.23	0.980124
				20701	17,039,488 – 17,039,583	+	10	105	57.35	-2.03	0.38	0.997683
				20702	17,039,488 – 17,039,583	-	10	105	57.35	-2.17	0.46	0.999620
				20704	17,039,642 – 17,039,753	-	12	137	68.49	-2.66	0.83	0.999350
				20706	17,039,753 – 17,039,911	-	12	182	65.24	-2.01	0.39	0.988616
15026	dm3.chrX	17,040,020 – 17,040,082	FBnoncoding="snoRNA;ID=FBtr0113571;Name=snoRNA:Psi18S-1854a-RA;Parent=FBgn0083042;Dbxref=FlyBase_Annotation_IDs:CR34602-RA,REFSEQ:NR_003744;score_text=Weakly" - - intron="intron;ID=intron_CG8922:2_CG8922:3;Name=RpS5a-in;Parent=FBtr0074406;parent_type=mRNA" "Rfam_10.0=RF00540;snopsi18S-1854;AABU01002771.1/6317023-6317176\|2.3e-28" - - -	20707	17,040,020 – 17,040,082	-	12	75	73.55	-2.58	0.92	0.997959
15027	dm3.chrX	17,040,609 – 17,040,718	- - - intron="intron;ID=intron_CG8922:2_CG8922:3;Name=RpS5a-in;Parent=FBtr0074406;parent_type=mRNA" - - - -	20709	17,040,609 – 17,040,718	-	11	114	61.91	-1.24	0.70	0.997672
15031	dm3.chrX	17,056,240 – 17,056,297	- - - intron="intron;ID=intron_FBgn0000163:1_FBgn0000163:3;Name=baz-in;Parent=FBtr0074388;parent_type=mRNA" - - - -	20714	17,056,240 – 17,056,297	+	7	58	83.36	-2.23	0.72	0.951170
15032	dm3.chrX	17,058,374 – 17,058,477	- - - intron="intron;ID=intron_FBgn0000163:1_FBgn0000163:3;Name=baz-in;Parent=FBtr0074388;parent_type=mRNA" - - - -	20716	17,058,374 – 17,058,474	-	5	102	72.38	-1.40	0.72	0.940342
15032	dm3.chrX	17,058,374 – 17,058,477		20717	17,058,377 – 17,058,477	-	5	102	72.84	-1.46	0.70	0.952518
15033	dm3.chrX	17,058,637 – 17,058,722	- - - intron="intron;ID=intron_FBgn0000163:1_FBgn0000163:3;Name=baz-in;Parent=FBtr0074388;parent_type=mRNA" - - - -	20718	17,058,637 – 17,058,722	+	5	89	90.73	-2.81	0.85	0.987616
15040	dm3.chrX	17,105,018 – 17,105,118	- - - - - - - -	20727	17,105,018 – 17,105,118	+	5	117	82.66	-2.22	0.73	0.933047
15041	dm3.chrX	17,115,219 – 17,115,310	- - - - - - - -	20729	17,115,219 – 17,115,310	+	8	99	70.31	-2.50	0.52	0.997346
15046	dm3.chrX	17,135,848 – 17,135,973	- - CDS="CDS;ID=CDS_FBgn0030833:1_980;Name=CG8915-cds;Parent=FBtr0074447;parent_type=mRNA" intron="intron;ID=intron_FBgn0262111:1_FBgn0262111:2;Name=f-in;Parent=FBtr0304067;parent_type=mRNA" - - - -	20737	17,135,848 – 17,135,973	-	7	126	66.21	-2.21	0.36	0.985213
15049	dm3.chrX	17,157,699 – 17,157,799	- - - intron="intron;ID=intron_FBgn0262111:5_FBgn0262111:9;Name=f-in;Parent=FBtr0304061;parent_type=mRNA" - - - -	20740	17,157,699 – 17,157,799	-	10	115	62.03	-0.68	0.51	0.909780
15051	dm3.chrX	17,174,279 – 17,174,339	- - CDS="CDS;ID=CDS_FBgn0262111:22_980;Name=f-cds;Parent=FBtr0304063,FBtr0304064,FBtr0304066;parent_type=mRNA" - - - - -	20742	17,174,279 – 17,174,339	+	4	68	58.59	-1.19	0.71	0.990686
15060	dm3.chrX	17,216,809 – 17,216,923	- - CDS="CDS;ID=CDS_CG5488:3_904;Name=B-H2-cds;Parent=FBtr0074429;parent_type=mRNA" - - - - -	20754	17,216,809 – 17,216,923	-	10	120	67.15	-1.71	0.36	0.936371
15062	dm3.chrX	17,233,246 – 17,233,345	- - - - - - - -	20756	17,233,246 – 17,233,345	+	10	102	92.18	-1.36	0.98	0.907799
15064	dm3.chrX	17,236,038 – 17,236,099	- - - - - - - -	20758	17,236,038 – 17,236,099	-	5	70	58.15	-1.17	0.43	0.917632
15065	dm3.chrX	17,240,515 – 17,240,625	- - - - - - - -	20759	17,240,515 – 17,240,625	+	5	110	95.09	-1.68	0.96	0.913456
15070	dm3.chrX	17,264,981 – 17,265,087	- - - - - - - -	20765	17,264,981 – 17,265,087	+	7	106	70.69	-1.46	0.51	0.939142
15070	dm3.chrX	17,264,981 – 17,265,087	- - - - - - - -	20766	17,264,981 – 17,265,087	-	7	106	70.69	-1.92	0.45	0.968330
15071	dm3.chrX	17,274,193 – 17,274,243	- - - - - - - -	20767	17,274,193 – 17,274,243	+	4	50	98.00	-5.16	0.99	0.998620
15071	dm3.chrX	17,274,193 – 17,274,243	- - - - - - - -	20768	17,274,193 – 17,274,243	-	4	50	98.00	-2.45	1.00	0.990356
15072	dm3.chrX	17,274,347 – 17,274,437	- - - - - - - -	20769	17,274,347 – 17,274,437	+	6	94	76.79	-2.87	0.55	0.991932
15074	dm3.chrX	17,295,962 – 17,296,058	- - CDS="CDS;ID=CDS_CG5529:3_905;Name=B-H1-cds;Parent=FBtr0074430;parent_type=mRNA" - - - - -	20772	17,295,962 – 17,296,058	+	7	117	61.61	-1.68	0.42	0.973390
15075	dm3.chrX	17,297,457 – 17,297,566	- - - - - - - -	20773	17,297,457 – 17,297,566	+	9	111	94.58	-1.80	0.93	0.914700
15081	dm3.chrX	17,332,012 – 17,332,197	- - - - - - - -	20781	17,332,012 – 17,332,126	-	4	115	90.83	-2.50	0.85	0.967087
				20782	17,332,052 – 17,332,155	+	4	115	86.22	-2.60	0.88	0.990395
				20783	17,332,052 – 17,332,155	-	4	115	86.22	-2.86	0.82	0.990912
15083	dm3.chrX	17,333,645 – 17,333,745	- - - - - - - -	20787	17,333,645 – 17,333,745	+	4	100	85.50	-2.73	0.80	0.987213
15084	dm3.chrX	17,334,239 – 17,334,351	- - - - - - - -	20789	17,334,239 – 17,334,351	-	5	116	82.68	-2.51	0.65	0.943879
15087	dm3.chrX	17,351,427 – 17,351,579	- - - - - - - -	20792	17,351,427 – 17,351,579	-	5	166	75.82	-1.70	0.69	0.936106
15088	dm3.chrX	17,352,184 – 17,352,301	- - - - - - - -	20793	17,352,184 – 17,352,301	-	13	118	79.98	-2.10	0.67	0.991661
15090	dm3.chrX	17,359,904 – 17,359,999	- - - intron="intron;ID=intron_FBgn0030842:6_FBgn0030842:5;Name=CG8557-in;Parent=FBtr0074434;parent_type=mRNA" - - - -	20795	17,359,904 – 17,359,999	-	6	110	81.20	-2.34	0.64	0.942604
15091	dm3.chrX	17,362,578 – 17,362,677	- - - intron="intron;ID=intron_FBgn0030842:6_FBgn0030842:5;Name=CG8557-in;Parent=FBtr0074434;parent_type=mRNA" - - - -	20796	17,362,578 – 17,362,677	+	5	116	75.50	-2.38	0.68	0.991172
15094	dm3.chrX	17,373,832 – 17,373,908	- - - intron="intron;ID=intron_FBgn0030842:6_FBgn0030842:5;Name=CG8557-in;Parent=FBtr0074434;parent_type=mRNA" - - - -	20800	17,373,832 – 17,373,908	-	9	77	78.79	-2.09	0.54	0.964597
15095	dm3.chrX	17,374,823 – 17,374,937	- - - intron="intron;ID=intron_FBgn0030842:6_FBgn0030842:5;Name=CG8557-in;Parent=FBtr0074434;parent_type=mRNA" - - - -	20801	17,374,823 – 17,374,937	+	5	114	82.91	-2.16	0.74	0.943487
15097	dm3.chrX	17,384,956 – 17,385,043	- - - - - - - -	20803	17,384,956 – 17,385,043	+	6	104	76.45	-2.91	0.82	0.998374
15097	dm3.chrX	17,384,956 – 17,385,043	- - - - - - - -	20804	17,384,956 – 17,385,043	-	6	104	76.45	-1.67	0.69	0.917121
15098	dm3.chrX	17,391,194 – 17,391,287	- - - intron="intron;ID=intron_FBgn0030842:8_FBgn0030842:7;Name=CG8557-in;Parent=FBtr0300436;parent_type=mRNA" - - - -	20805	17,391,194 – 17,391,287	+	6	100	73.79	-1.95	0.55	0.956825
15107	dm3.chrX	17,418,450 – 17,418,504	- - - - - - - -	20816	17,418,450 – 17,418,504	+	5	54	94.44	-2.74	0.86	0.974824
15108	dm3.chrX	17,436,015 – 17,436,255	- - - - - - - -	20819	17,436,135 – 17,436,255	-	5	120	90.58	-2.56	0.77	0.937520
15109	dm3.chrX	17,438,441 – 17,438,552	- - - - - - - -	20820	17,438,441 – 17,438,541	+	7	110	73.80	-1.97	0.67	0.991449
15109	dm3.chrX	17,438,441 – 17,438,552	- - - - - - - -	20821	17,438,459 – 17,438,552	+	6	93	83.58	-2.26	0.72	0.963618
15110	dm3.chrX	17,445,382 – 17,445,477	- - - - - - - -	20822	17,445,382 – 17,445,477	+	7	105	68.79	-1.79	0.63	0.994991
15119	dm3.chrX	17,484,292 – 17,484,466	- - CDS="CDS;ID=CDS_FBgn0030846:1_969;Name=CG12992-cds;Parent=FBtr0300778;parent_type=mRNA" intron="intron;ID=intron_CG12991:2_CG12991:3;Name=CG12991-in;Parent=FBtr0074448,FBtr0074449;parent_type=mRNA" - - - -	20834	17,484,357 – 17,484,466	-	5	120	68.72	-1.91	0.49	0.928684
15121	dm3.chrX	17,490,025 – 17,490,137	- - - - - - - -	20836	17,490,025 – 17,490,137	-	6	114	74.50	-2.04	0.59	0.982870
15123	dm3.chrX	17,503,091 – 17,503,203	- - - - - - - -	20839	17,503,091 – 17,503,203	+	6	120	72.46	-1.88	0.60	0.981319
15125	dm3.chrX	17,506,345 – 17,506,408	- - - - - - - -	20843	17,506,345 – 17,506,408	-	4	63	87.04	-2.58	0.93	0.993548
15127	dm3.chrX	17,522,779 – 17,522,874	- - CDS="CDS;ID=CDS_CG8326:2_900;Name=CG8326-cds;Parent=FBtr0074486;parent_type=mRNA" - - - - -	20845	17,522,779 – 17,522,874	-	6	111	75.68	-2.01	0.56	0.917558
15132	dm3.chrX	17,530,395 – 17,530,490	- - CDS="CDS;ID=CDS_CG5800:1_912;Name=CG5800-cds;Parent=FBtr0074453;parent_type=mRNA" - - - - -	20850	17,530,395 – 17,530,490	+	7	101	67.80	-1.39	0.54	0.976278
15132	dm3.chrX	17,530,395 – 17,530,490		20851	17,530,395 – 17,530,490	-	7	101	67.80	-1.67	0.56	0.993036
15141	dm3.chrX	17,561,834 – 17,561,930	- - - intron="intron;ID=intron_CG5870:4_CG5870:5;Name=beta-Spec-in;Parent=FBtr0074454;parent_type=mRNA" - - - -	20862	17,561,834 – 17,561,930	-	3	107	72.56	-1.95	0.63	0.905214
15145	dm3.chrX	17,586,007 – 17,586,105	- - - intron="intron;ID=intron_CG32556:2_CG32556:3;Name=CG32556-in;Parent=FBtr0074477;parent_type=mRNA" - - - -	20867	17,586,007 – 17,586,105	-	5	120	75.00	-1.72	0.74	0.950920
15146	dm3.chrX	17,593,399 – 17,593,511	- - - - - - - -	20868	17,593,399 – 17,593,511	+	5	118	95.80	-2.09	0.91	0.920992
15147	dm3.chrX	17,599,659 – 17,599,768	- - - - - - - -	20870	17,599,659 – 17,599,768	-	6	118	68.78	-1.82	0.50	0.968339
15148	dm3.chrX	17,604,012 – 17,604,205	- - - - - - - -	20871	17,604,012 – 17,604,125	-	5	120	79.08	-2.14	0.70	0.960271
				20872	17,604,045 – 17,604,165	+	5	120	86.22	-3.50	0.72	0.996284
				20873	17,604,045 – 17,604,165	-	5	120	86.22	-3.66	0.65	0.995687
				20874	17,604,085 – 17,604,205	+	5	120	90.28	-2.52	0.84	0.969312
				20875	17,604,085 – 17,604,205	-	5	120	90.28	-2.39	0.82	0.942049
15151	dm3.chrX	17,618,351 – 17,618,409	- - - intron="intron;ID=intron_FBgn0261570:5_FBgn0261570:6;Name=CG42684-in;Parent=FBtr0302836;parent_type=mRNA" - - - -	20880	17,618,351 – 17,618,409	-	7	62	82.64	-1.86	0.75	0.943749
15155	dm3.chrX	17,629,819 – 17,629,915	- - - intron="intron;ID=intron_FBgn0261570:6_FBgn0261570:7;Name=CG42684-in;Parent=FBtr0302836;parent_type=mRNA" - - - -	20884	17,629,819 – 17,629,915	-	4	96	86.24	-2.16	0.84	0.954150
15160	dm3.chrX	17,639,923 – 17,640,013	- - - intron="intron;ID=intron_FBgn0261570:8_FBgn0261570:9;Name=CG42684-in;Parent=FBtr0302833;parent_type=mRNA" - - - -	20889	17,639,923 – 17,640,013	-	5	91	81.09	-2.41	0.63	0.951421
15162	dm3.chrX	17,648,092 – 17,648,188	- - - - - - - -	20891	17,648,092 – 17,648,188	+	11	115	88.82	-2.22	0.76	0.906399
15169	dm3.chrX	17,724,638 – 17,724,722	- - - - - - - -	20898	17,724,638 – 17,724,722	-	3	84	89.68	-2.52	0.81	0.942164
15171	dm3.chrX	17,726,739 – 17,726,792	- - - intron="intron;ID=intron_CG6398:1_CG6398:2;Name=CG6398-in;Parent=FBtr0074462;parent_type=mRNA" - - - -	20900	17,726,739 – 17,726,792	+	5	53	91.13	-2.98	0.73	0.965265
15173	dm3.chrX	17,733,600 – 17,733,717	- - - intron="intron;ID=intron_CG6398:1_CG6398:2;Name=CG6398-in;Parent=FBtr0074462;parent_type=mRNA" - - - -	20902	17,733,600 – 17,733,717	-	4	120	73.73	-1.76	0.65	0.939150
15174	dm3.chrX	17,752,367 – 17,752,463	- - - - - - - -	20904	17,752,367 – 17,752,463	-	4	103	67.01	-2.55	0.41	0.970259
15175	dm3.chrX	17,766,100 – 17,766,208	- - - intron="intron;ID=intron_FBgn0259168:9_FBgn0259168:8;Name=mnb-in;Parent=FBtr0300508,FBtr0300509,FBtr0300510,FBtr0299619;parent_type=mRNA" - - - -	20906	17,766,100 – 17,766,208	-	5	110	94.39	-2.01	0.93	0.941981
15180	dm3.chrX	17,801,654 – 17,801,756	- - - - - - - -	20912	17,801,654 – 17,801,756	-	5	105	87.02	-2.25	0.78	0.930651
15184	dm3.chrX	17,827,737 – 17,827,839	- - - intron="intron;ID=intron_FBgn0003380:8_FBgn0003380:4;Name=Sh-in;Parent=FBtr0089660,FBtr0089658;parent_type=mRNA" - - - -	20916	17,827,737 – 17,827,839	+	5	112	68.88	-2.06	0.43	0.922444
15186	dm3.chrX	17,835,071 – 17,835,194	- - CDS="CDS;ID=CDS_FBgn0003380:6_995;Name=Sh-cds;Parent=FBtr0089657;parent_type=mRNA" - - - - -	20919	17,835,071 – 17,835,184	-	13	116	82.96	-1.75	0.82	0.966544
15188	dm3.chrX	17,864,147 – 17,864,289	- - - intron="intron;ID=intron_FBgn0003380:17_FBgn0003380:16;Name=Sh-in;Parent=FBtr0089657,FBtr0089658,FBtr0089663;parent_type=mRNA" - - - -	20922	17,864,147 – 17,864,265	-	6	120	78.25	-2.79	0.73	0.997356
15188	dm3.chrX	17,864,147 – 17,864,289		20923	17,864,187 – 17,864,289	-	6	110	74.76	-3.09	0.58	0.998530
15192	dm3.chrX	17,875,359 – 17,875,453	- - - intron="intron;ID=intron_FBgn0003380:18_FBgn0003380:17;Name=Sh-in;Parent=FBtr0089657,FBtr0089658;parent_type=mRNA" - - - -	20927	17,875,359 – 17,875,453	-	8	118	79.13	-2.80	0.45	0.923532
15193	dm3.chrX	17,877,369 – 17,877,456	- - - intron="intron;ID=intron_FBgn0003380:18_FBgn0003380:17;Name=Sh-in;Parent=FBtr0089657,FBtr0089658;parent_type=mRNA" - - - -	20928	17,877,369 – 17,877,456	+	7	95	66.38	-1.75	0.39	0.917707
15195	dm3.chrX	17,879,607 – 17,879,661	- - - intron="intron;ID=intron_FBgn0003380:18_FBgn0003380:17;Name=Sh-in;Parent=FBtr0089657,FBtr0089658;parent_type=mRNA" - - - -	20930	17,879,607 – 17,879,661	+	5	54	96.30	-2.11	0.99	0.980543
15195	dm3.chrX	17,879,607 – 17,879,661		20931	17,879,607 – 17,879,661	-	5	54	96.30	-1.88	0.96	0.938972
15197	dm3.chrX	17,883,603 – 17,883,659	- - - intron="intron;ID=intron_FBgn0003380:18_FBgn0003380:17;Name=Sh-in;Parent=FBtr0089657,FBtr0089658;parent_type=mRNA" - - - -	20933	17,883,603 – 17,883,659	+	9	70	66.40	-1.43	0.57	0.984056
15198	dm3.chrX	17,890,475 – 17,890,570	- - - - - - - -	20934	17,890,475 – 17,890,570	-	5	95	69.16	-2.20	0.43	0.968088
15199	dm3.chrX	17,893,109 – 17,893,203	- - - - - - - -	20935	17,893,109 – 17,893,203	-	7	109	70.13	-2.13	0.38	0.904659
15200	dm3.chrX	17,896,985 – 17,897,041	- - - - - - - -	20936	17,896,985 – 17,897,041	+	4	56	86.01	-2.08	0.91	0.975594
15202	dm3.chrX	17,906,487 – 17,906,591	- - - - - - - -	20938	17,906,487 – 17,906,591	+	6	115	59.12	-1.59	0.50	0.995379
15202	dm3.chrX	17,906,487 – 17,906,591	- - - - - - - -	20939	17,906,487 – 17,906,591	-	6	115	59.12	-1.08	0.44	0.918840
15203	dm3.chrX	17,909,275 – 17,909,357	- - - - - - - -	20940	17,909,275 – 17,909,357	+	6	83	83.48	-2.81	0.77	0.994226
15203	dm3.chrX	17,909,275 – 17,909,357	- - - - - - - -	20941	17,909,275 – 17,909,357	-	6	83	83.48	-2.32	0.68	0.947418
15205	dm3.chrX	17,916,310 – 17,916,543	- - - - - - - -	20945	17,916,418 – 17,916,528	+	4	116	82.49	-1.76	0.86	0.929691
				20946	17,916,418 – 17,916,528	-	4	116	82.49	-2.65	0.73	0.978660
				20947	17,916,435 – 17,916,543	+	5	115	69.78	-1.83	0.58	0.968839
				20948	17,916,435 – 17,916,543	-	5	115	69.78	-2.67	0.56	0.997301
15208	dm3.chrX	17,928,379 – 17,928,472	- - - - - - - -	20951	17,928,379 – 17,928,472	+	3	119	82.07	-2.97	0.89	0.996577
15210	dm3.chrX	17,932,778 – 17,932,861	- - - - - - - -	20953	17,932,778 – 17,932,861	+	5	100	48.39	-0.85	0.44	0.930867
15217	dm3.chrX	17,986,955 – 17,987,059	- - - - - - - -	20960	17,986,955 – 17,987,059	-	5	119	67.88	-2.23	0.67	0.997752
15219	dm3.chrX	18,012,492 – 18,012,558	- - - - - - - -	20962	18,012,492 – 18,012,558	+	4	70	88.94	-3.04	0.72	0.972180
15221	dm3.chrX	18,018,383 – 18,018,475	FBnoncoding="pre_miRNA;ID=FBtr0304365;Name=mir-969-RM;Parent=FBgn0262263;Alias=CR42970-RM;Dbxref=FlyBase_Annotation_IDs:CR42970-RM,miRBase:MI0005826" - - - - - - "mirBase_v16=dsi-mir-969\|9.1e-48"	20965	18,018,383 – 18,018,475	+	12	115	76.08	-2.59	0.86	0.998094
15222	dm3.chrX	18,022,248 – 18,022,349	FBnoncoding="pre_miRNA;ID=FBtr0304410;Name=mir-210-RM;Parent=FBgn0262433;Alias=CR42991-RM;Dbxref=FlyBase_Annotation_IDs:CR42991-RM,miRBase:MI0000376" - - - "Rfam_10.0=RF00679;mir-210;AANI01015309.1/4756-4850\|4.6e-34" "Noncode_2.0=n178690_u177788_NW_045813_miRNA_Anopheles\|3.5e-13" "unique_Noncode_2.0=u177788_miRNA_Anopheles\|3.1e-13" "mirBase_v16=dme-mir-210\|2.7e-51"	20966	18,022,248 – 18,022,349	+	15	115	79.95	-3.25	0.94	0.998677
15222	dm3.chrX	18,022,248 – 18,022,349		20967	18,022,248 – 18,022,349	-	15	115	79.95	-2.16	0.83	0.994956
15224	dm3.chrX	18,031,612 – 18,031,743	- - - - - - - -	20971	18,031,612 – 18,031,674	+	5	66	89.20	-1.42	0.98	0.932496
15224	dm3.chrX	18,031,612 – 18,031,743	- - - - - - - -	20972	18,031,674 – 18,031,743	-	6	74	75.09	-2.60	0.67	0.997005
15229	dm3.chrX	18,055,058 – 18,055,149	- - - - - - - -	20978	18,055,058 – 18,055,149	+	7	110	69.10	-1.81	0.56	0.985195
15229	dm3.chrX	18,055,058 – 18,055,149	- - - - - - - -	20979	18,055,058 – 18,055,149	-	7	110	69.10	-2.44	0.60	0.998565
15230	dm3.chrX	18,065,815 – 18,065,869	- - - - - - - -	20980	18,065,815 – 18,065,869	+	3	54	98.77	-2.09	1.00	0.976156
15231	dm3.chrX	18,069,816 – 18,069,913	- - - - - - - -	20981	18,069,816 – 18,069,913	+	11	113	71.28	-2.23	0.43	0.952862
15231	dm3.chrX	18,069,816 – 18,069,913	- - - - - - - -	20982	18,069,816 – 18,069,913	-	11	113	71.28	-2.38	0.53	0.993949
15232	dm3.chrX	18,075,419 – 18,075,545	- - - - - - - -	20983	18,075,419 – 18,075,519	-	10	102	77.46	-2.01	0.64	0.976762
15233	dm3.chrX	18,084,168 – 18,084,271	- - - intron="intron;ID=intron_FBgn0083228:4_FBgn0083228:5;Name=Frq2-in;Parent=FBtr0301627;parent_type=mRNA" - - - -	20986	18,084,168 – 18,084,271	+	5	124	64.91	-2.40	0.44	0.992731
15239	dm3.chrX	18,092,451 – 18,092,533	- - - intron="intron;ID=intron_FBgn0083228:5_FBgn0083228:6;Name=Frq2-in;Parent=FBtr0074546,FBtr0301627,FBtr0301628;parent_type=mRNA" - - - -	20993	18,092,451 – 18,092,533	+	6	85	72.37	-1.03	0.79	0.938718
15243	dm3.chrX	18,120,158 – 18,120,259	- - - - - - - -	20998	18,120,158 – 18,120,259	-	8	109	61.61	-1.86	0.34	0.969951
15244	dm3.chrX	18,120,905 – 18,120,962	- - - - - - - -	21000	18,120,905 – 18,120,962	-	5	63	88.55	-2.29	0.89	0.977497
15247	dm3.chrX	18,124,039 – 18,124,194	- - - - - - - -	21003	18,124,039 – 18,124,136	+	6	113	73.12	-2.66	0.41	0.962506
15249	dm3.chrX	18,126,032 – 18,126,145	- - - - - - - -	21006	18,126,032 – 18,126,145	-	5	113	79.64	-1.94	0.69	0.932680
15252	dm3.chrX	18,132,500 – 18,132,650	- - - - - - - -	21009	18,132,500 – 18,132,614	+	5	115	82.59	-2.28	0.65	0.918099
				21010	18,132,500 – 18,132,614	-	5	115	82.59	-2.62	0.74	0.987949
				21011	18,132,540 – 18,132,650	-	6	115	72.56	-2.13	0.44	0.941852
15253	dm3.chrX	18,133,677 – 18,133,781	- - - - - - - -	21012	18,133,677 – 18,133,781	+	4	104	80.49	-2.27	0.76	0.973372
15253	dm3.chrX	18,133,677 – 18,133,781	- - - - - - - -	21013	18,133,677 – 18,133,781	-	4	104	80.49	-2.72	0.84	0.995337
15254	dm3.chrX	18,133,962 – 18,134,132	- - - - - - - -	21015	18,133,962 – 18,134,061	-	5	100	89.13	-1.91	0.86	0.903559
15254	dm3.chrX	18,133,962 – 18,134,132	- - - - - - - -	21016	18,134,025 – 18,134,132	+	6	116	70.23	-1.86	0.51	0.975612
15255	dm3.chrX	18,136,331 – 18,136,427	- - - intron="intron;ID=intron_FBgn0030904:3_FBgn0030904:2;Name=upd2-in;Parent=FBtr0300182;parent_type=mRNA" - - - -	21018	18,136,331 – 18,136,427	-	3	101	86.90	-1.96	0.94	0.967651
15258	dm3.chrX	18,148,660 – 18,148,721	- - - - - - - -	21021	18,148,660 – 18,148,721	+	6	63	79.82	-2.11	0.67	0.957767
15259	dm3.chrX	18,152,838 – 18,152,942	- - - - - - - -	21022	18,152,838 – 18,152,942	+	6	116	63.91	-4.58	0.40	0.999959
15259	dm3.chrX	18,152,838 – 18,152,942	- - - - - - - -	21023	18,152,838 – 18,152,942	-	6	116	63.91	-4.01	0.52	0.999966
15262	dm3.chrX	18,175,524 – 18,175,651	- - - intron="intron;ID=intron_FBgn0053542:3_FBgn0053542:4;Name=upd3-in;Parent=FBtr0113465;parent_type=mRNA" - - - -	21028	18,175,547 – 18,175,651	-	5	117	67.83	-1.51	0.64	0.946111
15264	dm3.chrX	18,189,491 – 18,189,599	- - - - - - - -	21030	18,189,491 – 18,189,599	-	4	119	86.18	-2.32	0.76	0.919495
15266	dm3.chrX	18,195,074 – 18,195,166	- - - - - - - -	21032	18,195,074 – 18,195,166	-	11	97	68.52	-1.26	0.65	0.990094
15271	dm3.chrX	18,207,586 – 18,207,658	- - - - - - - -	21037	18,207,586 – 18,207,658	+	3	76	85.71	-2.73	0.83	0.985371
15274	dm3.chrX	18,224,284 – 18,224,384	- - - intron="intron;ID=intron_FBgn0030913:4_FBgn0030913:3;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21041	18,224,284 – 18,224,384	+	5	100	88.90	-2.47	0.76	0.937096
15276	dm3.chrX	18,231,434 – 18,231,531	- - - intron="intron;ID=intron_FBgn0030913:5_FBgn0030913:4;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21043	18,231,434 – 18,231,531	-	4	120	59.34	-1.01	0.66	0.952264
15280	dm3.chrX	18,239,319 – 18,239,386	- - - intron="intron;ID=intron_FBgn0030913:5_FBgn0030913:4;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21047	18,239,319 – 18,239,386	+	10	77	75.37	-1.59	0.67	0.977960
15282	dm3.chrX	18,247,094 – 18,247,184	- - - intron="intron;ID=intron_FBgn0030913:5_FBgn0030913:4;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21050	18,247,094 – 18,247,184	-	5	91	77.46	-2.26	0.62	0.951112
15285	dm3.chrX	18,269,474 – 18,269,617	- - - intron="intron;ID=intron_FBgn0014467:11_FBgn0014467:12;Name=CrebB-17A-in;Parent=FBtr0074554,FBtr0074555,FBtr0074556,FBtr0112878;parent_type=mRNA" - - - -	21053	18,269,474 – 18,269,580	+	5	120	78.61	-2.21	0.59	0.905495
				21054	18,269,474 – 18,269,580	-	5	120	78.61	-2.48	0.58	0.954703
				21055	18,269,513 – 18,269,617	+	4	116	79.55	-3.73	0.77	0.999060
				21056	18,269,513 – 18,269,617	-	4	116	79.55	-3.07	0.70	0.995300
15288	dm3.chrX	18,288,992 – 18,289,166	- - - intron="intron;ID=intron_CG32549:9_CG32549:3;Name=CG32549-in;Parent=FBtr0074571;parent_type=mRNA" - - - -	21059	18,288,992 – 18,289,088	-	3	96	77.27	-2.31	0.77	0.969410
15299	dm3.chrX	18,329,461 – 18,329,560	- - - - - - - -	21077	18,329,461 – 18,329,560	+	5	120	69.60	-2.05	0.54	0.964213
15307	dm3.chrX	18,349,053 – 18,349,148	- - - intron="intron;ID=intron_FBgn0052547:5_FBgn0052547:4;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21087	18,349,053 – 18,349,148	-	7	116	65.30	-0.75	0.62	0.936757
15308	dm3.chrX	18,354,322 – 18,354,423	- - - intron="intron;ID=intron_FBgn0052547:6_FBgn0052547:5;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21088	18,354,322 – 18,354,423	+	5	120	78.60	-1.94	0.76	0.962058
15313	dm3.chrX	18,367,446 – 18,367,536	- - - intron="intron;ID=intron_FBgn0052547:7_FBgn0052547:6;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21095	18,367,446 – 18,367,536	-	6	98	55.00	-1.90	0.36	0.988245
15321	dm3.chrX	18,414,574 – 18,414,692	- - - - - - - -	21108	18,414,574 – 18,414,692	+	4	123	68.09	-1.00	0.82	0.934648
15326	dm3.chrX	18,433,146 – 18,433,227	- - - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" - - - -	21114	18,433,146 – 18,433,227	-	11	84	91.20	-1.96	0.89	0.940690
15328	dm3.chrX	18,437,241 – 18,437,343	- - - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" - - - -	21116	18,437,241 – 18,437,337	+	3	107	68.25	-2.10	0.52	0.910328
15328	dm3.chrX	18,437,241 – 18,437,343		21117	18,437,249 – 18,437,343	+	3	109	68.57	-2.27	0.49	0.901145
15330	dm3.chrX	18,443,471 – 18,443,576	- - - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" - - - -	21120	18,443,471 – 18,443,576	+	3	117	89.37	-2.71	0.82	0.971942
15331	dm3.chrX	18,443,937 – 18,444,046	- - - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" - - - -	21122	18,443,937 – 18,444,046	-	11	122	79.73	-2.30	0.74	0.991426
15333	dm3.chrX	18,459,796 – 18,459,891	FBnoncoding="tRNA;ID=FBtr0074600;Name=tRNA:CR32546-RA;Parent=FBgn0052546;Alias=CR32546-RA;Dbxref=FlyBase_Annotation_IDs:CR32546-RA;score_text=Weakly" tRNAscann="Pro_chrX_trna14" - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|2.5e-29" - - -	21124	18,459,796 – 18,459,891	+	10	104	72.22	-0.90	0.91	0.969103
15333	dm3.chrX	18,459,796 – 18,459,891		21125	18,459,796 – 18,459,891	-	10	104	72.22	-2.28	0.87	0.998562
15334	dm3.chrX	18,471,091 – 18,471,189	- - - - - - - -	21126	18,471,091 – 18,471,189	-	9	109	80.03	-2.54	0.62	0.981207
15335	dm3.chrX	18,474,386 – 18,474,467	- - - - - - - -	21127	18,474,386 – 18,474,467	+	12	90	65.32	-1.76	0.40	0.978484
15336	dm3.chrX	18,484,818 – 18,484,896	- - - - - - - -	21129	18,484,818 – 18,484,896	+	5	90	75.24	-2.04	0.61	0.940366
15340	dm3.chrX	18,506,485 – 18,506,645	- - CDS="CDS;ID=CDS_CG15040:1_904;Name=CG15040-cds;Parent=FBtr0074618;parent_type=mRNA" - - - - -	21133	18,506,485 – 18,506,605	+	3	120	87.22	-2.31	0.81	0.933297
15342	dm3.chrX	18,517,779 – 18,517,834	- - - - - - - -	21136	18,517,779 – 18,517,834	-	5	55	91.64	-2.16	0.91	0.964004
15345	dm3.chrX	18,533,331 – 18,533,422	- - CDS="CDS;ID=CDS_FBgn0027335:6_977;Name=Rip11-cds;Parent=FBtr0074616;parent_type=mRNA" - - - - -	21139	18,533,331 – 18,533,422	+	5	97	89.50	-2.36	0.85	0.962883
15346	dm3.chrX	18,535,019 – 18,535,126	- - - intron="intron;ID=intron_FBgn0027335:9_FBgn0027335:8;Name=Rip11-in;Parent=FBtr0074616,FBtr0301545;parent_type=mRNA" - - - -	21140	18,535,019 – 18,535,119	+	5	115	80.90	-2.37	0.72	0.974313
15353	dm3.chrX	18,574,593 – 18,574,701	- - - - - - - -	21152	18,574,593 – 18,574,701	-	3	108	75.58	-2.01	0.76	0.940916
15355	dm3.chrX	18,583,032 – 18,583,083	- - - - - - - -	21154	18,583,032 – 18,583,083	+	3	51	93.46	-4.00	0.99	0.998887
15355	dm3.chrX	18,583,032 – 18,583,083	- - - - - - - -	21155	18,583,032 – 18,583,083	-	3	51	93.46	-4.21	1.01	0.999044
15357	dm3.chrX	18,592,765 – 18,592,878	- - - - - - - -	21158	18,592,765 – 18,592,878	-	3	114	85.21	-2.60	0.69	0.910246
15358	dm3.chrX	18,599,132 – 18,599,227	- - - - - - - -	21159	18,599,132 – 18,599,227	-	4	104	85.26	-2.47	0.86	0.985514
15360	dm3.chrX	18,602,095 – 18,602,210	- - - - - - - -	21161	18,602,095 – 18,602,210	+	3	115	87.98	-2.88	0.79	0.979260
15361	dm3.chrX	18,608,506 – 18,608,616	- - - intron="intron;ID=intron_FBgn0259197:5_FBgn0259197:4;Name=CCKLR-17D1-in;Parent=FBtr0299681;parent_type=mRNA" - - - -	21162	18,608,506 – 18,608,616	+	4	113	86.67	-2.46	0.81	0.964087
15368	dm3.chrX	18,654,034 – 18,654,167	- - - - - - - -	21172	18,654,062 – 18,654,167	-	6	115	60.62	-2.51	0.26	0.958972
15369	dm3.chrX	18,661,661 – 18,661,711	- - - intron="intron;ID=intron_FBgn0030954:5_FBgn0030954:4;Name=CCKLR-17D3-in;Parent=FBtr0113003;parent_type=mRNA" - - - -	21174	18,661,661 – 18,661,711	-	4	51	79.87	-1.50	0.88	0.932434
15375	dm3.chrX	18,690,925 – 18,691,025	- - - - - - - -	21180	18,690,925 – 18,691,025	-	5	109	45.76	-1.85	0.23	0.936660
15381	dm3.chrX	18,750,554 – 18,750,701	- - - intron="intron;ID=intron_CG7322:1_CG7322:2;Name=CG7322-in;Parent=FBtr0074654;parent_type=mRNA" - - - -	21188	18,750,590 – 18,750,701	+	5	112	89.26	-2.68	0.78	0.969022
15381	dm3.chrX	18,750,554 – 18,750,701		21189	18,750,590 – 18,750,701	-	5	112	89.26	-2.01	0.84	0.903757
15384	dm3.chrX	18,771,291 – 18,771,382	- - CDS="CDS;ID=CDS_FBgn0085430:5_950;Name=CG34401-cds;Parent=FBtr0112653;parent_type=mRNA" - - - - -	21192	18,771,291 – 18,771,382	-	9	95	73.82	-1.62	0.65	0.982552
15388	dm3.chrX	18,785,960 – 18,786,020	- - - intron="intron;ID=intron_CG7358:2_CG7358:3;Name=CG7358-in;Parent=FBtr0074652;parent_type=mRNA" - - - -	21197	18,785,960 – 18,786,020	-	4	64	74.66	-2.70	0.53	0.979638
15399	dm3.chrX	18,849,725 – 18,849,854	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21209	18,849,725 – 18,849,817	+	3	92	90.23	-2.52	0.92	0.985733
15399	dm3.chrX	18,849,725 – 18,849,854		21211	18,849,752 – 18,849,854	+	3	102	91.22	-3.10	0.93	0.995797
15401	dm3.chrX	18,868,911 – 18,869,060	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21213	18,868,911 – 18,869,060	+	7	170	80.11	-1.83	0.74	0.946862
15403	dm3.chrX	18,875,515 – 18,875,632	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21215	18,875,515 – 18,875,631	+	11	117	80.31	-2.02	0.56	0.935330
15403	dm3.chrX	18,875,515 – 18,875,632		21216	18,875,515 – 18,875,632	+	11	117	80.32	-2.02	0.56	0.937660
15404	dm3.chrX	18,878,541 – 18,878,658	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21219	18,878,563 – 18,878,658	-	10	121	86.70	-2.19	0.80	0.957555
15405	dm3.chrX	18,880,014 – 18,880,088	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21220	18,880,014 – 18,880,088	+	7	83	61.25	-1.77	0.34	0.943070
15405	dm3.chrX	18,880,014 – 18,880,088		21221	18,880,014 – 18,880,088	-	7	83	61.25	-1.48	0.46	0.986212
15406	dm3.chrX	18,891,372 – 18,891,490	- - - intron="intron;ID=intron_FBgn0260232:3_FBgn0260232:4;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21222	18,891,372 – 18,891,490	+	5	122	86.82	-2.36	0.75	0.936613
15415	dm3.chrX	18,926,785 – 18,926,893	- - - - - - - -	21233	18,926,785 – 18,926,893	-	4	118	91.59	-2.61	0.89	0.982989
15416	dm3.chrX	18,936,907 – 18,937,002	- - - - - - - -	21235	18,936,907 – 18,937,002	-	5	95	82.79	-2.27	0.82	0.980129
15418	dm3.chrX	18,938,518 – 18,938,632	- - - - - - - -	21238	18,938,518 – 18,938,615	+	11	112	74.90	-1.72	0.56	0.950179
15418	dm3.chrX	18,938,518 – 18,938,632	- - - - - - - -	21239	18,938,531 – 18,938,632	+	9	113	78.37	-1.78	0.67	0.938703
15422	dm3.chrX	18,965,411 – 18,965,572	- - - - - - - -	21243	18,965,411 – 18,965,572	+	4	166	62.46	-3.09	0.36	0.991485
15422	dm3.chrX	18,965,411 – 18,965,572	- - - - - - - -	21244	18,965,411 – 18,965,572	-	4	166	62.46	-2.65	0.36	0.963468
15423	dm3.chrX	18,972,940 – 18,973,031	- - - - - - - -	21245	18,972,940 – 18,973,031	+	3	105	70.00	-2.23	0.56	0.945896
15425	dm3.chrX	18,974,493 – 18,974,592	- - - - - - - -	21249	18,974,493 – 18,974,586	-	6	117	66.75	-1.73	0.53	0.976801
				21250	18,974,493 – 18,974,592	+	6	119	69.87	-1.97	0.51	0.965550
				21251	18,974,493 – 18,974,592	-	6	119	69.87	-2.10	0.47	0.959124
15433	dm3.chrX	18,996,802 – 18,996,869	- - - - - - - -	21263	18,996,802 – 18,996,869	+	9	89	86.21	-4.01	0.41	0.982084
15433	dm3.chrX	18,996,802 – 18,996,869	- - - - - - - -	21264	18,996,802 – 18,996,869	-	9	89	86.21	-2.99	0.59	0.955517
15437	dm3.chrX	19,013,959 – 19,014,085	- - - - - - - -	21269	19,013,984 – 19,014,085	+	8	104	64.85	-1.83	0.35	0.922034
15437	dm3.chrX	19,013,959 – 19,014,085	- - - - - - - -	21270	19,013,984 – 19,014,085	-	8	104	64.85	-2.58	0.38	0.996865
15439	dm3.chrX	19,030,874 – 19,030,950	- - - intron="intron;ID=intron_FBgn0259169:4_FBgn0259169:1;Name=RhoGAP18B-in;Parent=FBtr0299623;parent_type=mRNA" - - - -	21272	19,030,874 – 19,030,950	+	6	84	60.67	-1.27	0.63	0.995872
15439	dm3.chrX	19,030,874 – 19,030,950		21273	19,030,874 – 19,030,950	-	6	84	60.67	-0.96	0.47	0.903847
15442	dm3.chrX	19,057,752 – 19,057,849	- - - - - - - -	21279	19,057,752 – 19,057,849	+	3	120	59.59	-1.83	0.48	0.940341
15444	dm3.chrX	19,087,504 – 19,087,624	- - - - - - - -	21281	19,087,504 – 19,087,597	+	6	95	68.89	-2.68	0.40	0.994759
15444	dm3.chrX	19,087,504 – 19,087,624	- - - - - - - -	21282	19,087,504 – 19,087,597	-	6	95	68.89	-2.57	0.40	0.992514
15446	dm3.chrX	19,091,138 – 19,091,206	- - - - - - - -	21286	19,091,138 – 19,091,206	+	4	68	85.05	-2.50	0.68	0.918682
15449	dm3.chrX	19,104,857 – 19,105,017	- - CDS="CDS;ID=CDS_FBgn0030998:4_1001;Name=CG14195-cds;Parent=FBtr0074692;parent_type=mRNA" - - - - -	21291	19,104,857 – 19,104,977	-	12	120	81.21	-2.78	0.57	0.990307
15452	dm3.chrX	19,121,979 – 19,122,106	- - - intron="intron;ID=intron_CG7884:1_CG7884:2;Name=CG7884-in;Parent=FBtr0074674;parent_type=mRNA" - - - -	21296	19,122,015 – 19,122,106	-	4	91	95.13	-2.64	0.82	0.927809
15455	dm3.chrX	19,155,852 – 19,155,937	- - - - - - - -	21299	19,155,852 – 19,155,937	+	6	88	70.70	-1.87	0.43	0.904896
15457	dm3.chrX	19,160,029 – 19,160,230	- - - intron="intron;ID=intron_FBgn0040068:4_FBgn0040068:5;Name=vav-in;Parent=FBtr0113316;parent_type=mRNA" - - - -	21302	19,160,029 – 19,160,121	+	3	110	78.23	-2.96	0.57	0.966322
15457	dm3.chrX	19,160,029 – 19,160,230		21303	19,160,029 – 19,160,121	-	3	110	78.23	-3.45	0.69	0.997205
15459	dm3.chrX	19,162,840 – 19,163,004	- - - - - - - -	21308	19,162,840 – 19,162,954	-	5	118	90.22	-3.24	0.84	0.994814
				21310	19,162,876 – 19,162,991	-	6	115	73.97	-2.18	0.65	0.994845
				21312	19,162,888 – 19,163,004	-	6	118	72.69	-2.55	0.57	0.997703
15461	dm3.chrX	19,172,574 – 19,172,637	- - - intron="intron;ID=intron_FBgn0031010:4_FBgn0031010:2;Name=CG8028-in;Parent=FBtr0074685;parent_type=mRNA" - - - -	21314	19,172,574 – 19,172,637	+	3	68	64.77	-3.20	0.82	0.999285
15461	dm3.chrX	19,172,574 – 19,172,637		21315	19,172,574 – 19,172,637	-	3	68	64.77	-2.49	0.71	0.997193
15462	dm3.chrX	19,189,293 – 19,189,393	- - - intron="intron;ID=intron_FBgn0031011:5_FBgn0031011:3;Name=CG8034-in;Parent=FBtr0074684;parent_type=mRNA" - - - -	21316	19,189,293 – 19,189,393	+	6	107	70.07	-3.77	0.32	0.997554
15463	dm3.chrX	19,193,665 – 19,193,818	- - - - - - - -	21317	19,193,665 – 19,193,818	+	4	191	61.11	-1.58	0.48	0.914994
15466	dm3.chrX	19,202,695 – 19,202,787	- - - - - - - -	21320	19,202,695 – 19,202,787	+	3	93	84.27	-2.89	0.64	0.936241
15467	dm3.chrX	19,204,920 – 19,204,976	- - - - - - - -	21321	19,204,920 – 19,204,976	+	5	58	67.26	-2.26	0.49	0.993166
15468	dm3.chrX	19,208,133 – 19,208,269	- - - intron="intron;ID=intron_CG8062:1_CG8062:2;Name=out-in;Parent=FBtr0074682;parent_type=mRNA" - - - -	21322	19,208,133 – 19,208,234	-	5	120	75.87	-1.65	0.73	0.933386
15470	dm3.chrX	19,218,369 – 19,218,498	- - - - - - - -	21327	19,218,404 – 19,218,498	+	4	110	53.68	-1.60	0.37	0.909570
15470	dm3.chrX	19,218,369 – 19,218,498	- - - - - - - -	21328	19,218,404 – 19,218,498	-	4	110	53.68	-1.80	0.35	0.932129
15472	dm3.chrX	19,219,786 – 19,219,876	- - - - - - - -	21332	19,219,786 – 19,219,876	+	3	90	87.04	-3.81	0.79	0.997687
15472	dm3.chrX	19,219,786 – 19,219,876	- - - - - - - -	21333	19,219,786 – 19,219,876	-	3	90	87.04	-4.58	0.81	0.999134
15473	dm3.chrX	19,248,566 – 19,248,702	- - - intron="intron;ID=intron_FBgn0031016:1_FBgn0031016:3;Name=kek5-in;Parent=FBtr0074707;parent_type=mRNA" - - - -	21335	19,248,588 – 19,248,702	+	4	120	83.62	-2.46	0.67	0.919426
15474	dm3.chrX	19,253,217 – 19,253,336	- - - intron="intron;ID=intron_FBgn0031016:1_FBgn0031016:3;Name=kek5-in;Parent=FBtr0074707;parent_type=mRNA" - - - -	21336	19,253,217 – 19,253,336	-	4	120	76.93	-2.44	0.55	0.956344
15478	dm3.chrX	19,256,815 – 19,256,932	- - - intron="intron;ID=intron_FBgn0031016:1_FBgn0031016:3;Name=kek5-in;Parent=FBtr0074707;parent_type=mRNA" - - - -	21340	19,256,815 – 19,256,932	+	3	119	74.22	-3.22	0.44	0.973892
15480	dm3.chrX	19,260,634 – 19,260,768	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21342	19,260,634 – 19,260,768	-	5	150	73.81	-2.59	0.43	0.928381
15481	dm3.chrX	19,268,249 – 19,268,359	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21343	19,268,249 – 19,268,359	+	4	116	75.96	-2.91	0.53	0.986272
15481	dm3.chrX	19,268,249 – 19,268,359		21344	19,268,249 – 19,268,359	-	4	116	75.96	-2.92	0.55	0.989555
15490	dm3.chrX	19,290,554 – 19,290,699	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21354	19,290,554 – 19,290,659	+	4	106	91.65	-1.89	0.90	0.908873
				21355	19,290,554 – 19,290,659	-	4	106	91.65	-2.18	0.95	0.979925
				21356	19,290,579 – 19,290,699	+	5	120	94.30	-2.17	0.92	0.955106
15491	dm3.chrX	19,292,649 – 19,292,754	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21359	19,292,649 – 19,292,754	-	4	120	85.25	-2.04	0.90	0.968851
15493	dm3.chrX	19,293,507 – 19,293,601	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21361	19,293,507 – 19,293,601	+	4	110	66.24	-2.40	0.68	0.998141
15497	dm3.chrX	19,303,266 – 19,303,417	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21366	19,303,266 – 19,303,382	+	5	120	90.17	-2.70	0.95	0.994682
15497	dm3.chrX	19,303,266 – 19,303,417		21367	19,303,266 – 19,303,382	-	5	120	90.17	-3.06	0.84	0.992372
15498	dm3.chrX	19,309,318 – 19,309,419	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21369	19,309,318 – 19,309,419	+	3	101	78.72	-4.91	0.74	0.999589
15498	dm3.chrX	19,309,318 – 19,309,419		21370	19,309,318 – 19,309,419	-	3	101	78.72	-3.36	0.77	0.997428
15499	dm3.chrX	19,309,465 – 19,309,558	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21371	19,309,465 – 19,309,558	-	5	108	56.68	-2.25	0.30	0.944191
15501	dm3.chrX	19,312,335 – 19,312,442	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21373	19,312,335 – 19,312,442	-	5	120	89.48	-2.40	0.78	0.915847
15503	dm3.chrX	19,312,966 – 19,313,187	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21376	19,313,006 – 19,313,108	+	5	120	86.92	-2.00	0.87	0.948161
15504	dm3.chrX	19,316,339 – 19,316,397	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21378	19,316,339 – 19,316,397	+	4	60	80.73	-2.72	0.62	0.970179
15505	dm3.chrX	19,318,161 – 19,318,276	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21379	19,318,161 – 19,318,276	+	4	115	67.18	-2.20	0.46	0.951766
15508	dm3.chrX	19,319,893 – 19,320,013	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21383	19,319,893 – 19,320,013	+	3	120	79.17	-2.12	0.72	0.912562
15512	dm3.chrX	19,330,844 – 19,330,974	- - - intron="intron;ID=intron_FBgn0031016:4_FBgn0031016:5;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21387	19,330,844 – 19,330,964	+	3	120	80.06	-2.84	0.83	0.995231
15512	dm3.chrX	19,330,844 – 19,330,974		21388	19,330,884 – 19,330,974	+	3	96	87.94	-1.87	0.98	0.976041
15518	dm3.chrX	19,353,538 – 19,353,744	- - - intron="intron;ID=intron_FBgn0031016:5_FBgn0031016:6;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21398	19,353,561 – 19,353,665	-	5	120	89.96	-2.24	0.95	0.984891
15518	dm3.chrX	19,353,538 – 19,353,744		21400	19,353,600 – 19,353,705	-	5	120	89.25	-2.94	0.83	0.989256
15523	dm3.chrX	19,389,567 – 19,389,645	- - - intron="intron;ID=intron_CG3400:1_CG3400:2;Name=Pfrx-in;Parent=FBtr0074713;parent_type=mRNA" - - - -	21406	19,389,567 – 19,389,645	+	7	106	73.19	-2.46	0.51	0.976429
15527	dm3.chrX	19,396,424 – 19,396,498	- - - intron="intron;ID=intron_CG3400:5_CG3400:6;Name=Pfrx-in;Parent=FBtr0074716;parent_type=mRNA" - - - -	21416	19,396,424 – 19,396,498	-	4	86	66.12	-2.26	0.45	0.973885
15530	dm3.chrX	19,424,849 – 19,424,969	- - - - - - - -	21419	19,424,849 – 19,424,969	-	3	120	89.64	-2.00	0.93	0.958241
15531	dm3.chrX	19,427,102 – 19,427,188	- - - - - - - -	21420	19,427,102 – 19,427,188	+	11	102	64.36	-3.48	0.17	0.991488
15531	dm3.chrX	19,427,102 – 19,427,188	- - - - - - - -	21421	19,427,102 – 19,427,188	-	11	102	64.36	-5.46	0.23	0.999939
15533	dm3.chrX	19,442,497 – 19,442,565	- - - - - - - -	21423	19,442,497 – 19,442,565	+	3	68	58.42	-2.21	0.88	0.997883
15533	dm3.chrX	19,442,497 – 19,442,565	- - - - - - - -	21424	19,442,497 – 19,442,565	-	3	68	58.42	-1.88	0.96	0.993978
15534	dm3.chrX	19,442,709 – 19,442,796	- - - - - - - -	21425	19,442,709 – 19,442,796	+	8	97	83.53	-2.53	0.63	0.949975
15536	dm3.chrX	19,445,332 – 19,445,441	- - - - - - - -	21427	19,445,332 – 19,445,441	+	3	113	89.32	-4.01	0.91	0.998722
15538	dm3.chrX	19,452,097 – 19,452,164	- - - - - - - -	21429	19,452,097 – 19,452,164	+	5	74	72.64	-2.30	0.62	0.991093
15539	dm3.chrX	19,452,781 – 19,452,883	FBnoncoding="pre_miRNA;ID=FBtr0304294;Name=mir-975-RM;Parent=FBgn0262228;Alias=CR42935-RM;Dbxref=FlyBase_Annotation_IDs:CR42935-RM,miRBase:MI0005832" - - - - - - "mirBase_v16=dme-mir-975\|4.1e-47"	21431	19,452,781 – 19,452,883	+	8	107	70.56	-3.33	0.44	0.999454
15540	dm3.chrX	19,452,934 – 19,453,035	FBnoncoding="pre_miRNA;ID=FBtr0304532;Name=mir-976-RM;Parent=FBgn0262341;Alias=CR43048-RM;Dbxref=FlyBase_Annotation_IDs:CR43048-RM,miRBase:MI0005833" - - - - - - "mirBase_v16=dme-mir-976\|1.6e-46"	21432	19,452,934 – 19,453,035	+	9	120	65.63	-3.53	0.56	0.999940
15540	dm3.chrX	19,452,934 – 19,453,035		21433	19,452,934 – 19,453,035	-	9	120	65.63	-3.11	0.27	0.990755
15541	dm3.chrX	19,455,269 – 19,455,364	FBnoncoding="pre_miRNA;ID=FBtr0304474;Name=mir-978-RM;Parent=FBgn0262314;Alias=CR43021-RM;Dbxref=FlyBase_Annotation_IDs:CR43021-RM,miRBase:MI0005835" - - - - - - "mirBase_v16=dme-mir-978\|3.8e-47"	21434	19,455,269 – 19,455,364	+	8	103	71.84	-2.06	0.55	0.991674
15541	dm3.chrX	19,455,269 – 19,455,364		21435	19,455,269 – 19,455,364	-	8	103	71.84	-1.73	0.47	0.918469
15542	dm3.chrX	19,460,148 – 19,460,200	- - - intron="intron;ID=intron_FBgn0000257:1_FBgn0000257:3;Name=car-in;Parent=FBtr0074727;parent_type=mRNA" - - - -	21436	19,460,148 – 19,460,200	-	3	52	89.68	-2.63	0.81	0.957430
15543	dm3.chrX	19,469,618 – 19,469,723	- - CDS="CDS;ID=CDS_FBgn0031030:13_980;Name=Tao-1-cds;Parent=FBtr0074771,FBtr0303999;parent_type=mRNA" - - - - -	21437	19,469,618 – 19,469,723	+	9	111	61.68	-2.30	0.25	0.939031
15548	dm3.chrX	19,491,712 – 19,491,816	- - - - - - - -	21443	19,491,712 – 19,491,816	+	5	104	74.90	-2.06	0.55	0.925676
15550	dm3.chrX	19,500,304 – 19,500,382	- - - intron="intron;ID=intron_CG14207:1_CG14207:5;Name=CG14207-in;Parent=FBtr0074734;parent_type=mRNA" - - - -	21446	19,500,304 – 19,500,382	-	5	88	87.20	-1.79	0.98	0.976935
15555	dm3.chrX	19,559,894 – 19,560,041	- - - - - - - -	21451	19,559,894 – 19,560,041	+	5	153	71.68	-3.16	0.42	0.995763
15556	dm3.chrX	19,561,160 – 19,561,214	- - - - - - - -	21452	19,561,160 – 19,561,214	-	5	54	96.11	-2.20	0.97	0.978197
15565	dm3.chrX	19,630,780 – 19,630,911	- - - intron="intron;ID=intron_CG14234:1_CG14234:2;Name=CG14234-in;Parent=FBtr0074790;parent_type=mRNA" - - - -	21464	19,630,804 – 19,630,911	-	5	111	59.26	-1.62	0.40	0.949528
15568	dm3.chrX	19,646,757 – 19,646,863	- - - intron="intron;ID=intron_CG12703:2_CG12703:3;Name=CG12703-in;Parent=FBtr0074795;parent_type=mRNA" - - - -	21468	19,646,757 – 19,646,863	+	3	112	61.18	-2.95	0.32	0.967583
15568	dm3.chrX	19,646,757 – 19,646,863		21469	19,646,757 – 19,646,863	-	3	112	61.18	-3.05	0.29	0.956263
15570	dm3.chrX	19,647,774 – 19,647,877	- - - intron="intron;ID=intron_CG12703:2_CG12703:3;Name=CG12703-in;Parent=FBtr0074795;parent_type=mRNA" - - - -	21471	19,647,774 – 19,647,877	+	3	103	89.32	-2.85	0.79	0.972837
15573	dm3.chrX	19,657,415 – 19,657,481	- - - - - - - -	21477	19,657,415 – 19,657,481	-	6	66	80.51	-2.23	0.67	0.972903
15574	dm3.chrX	19,666,290 – 19,666,386	- - - - - - - -	21478	19,666,290 – 19,666,386	+	5	96	98.96	-2.05	0.98	0.961121
15575	dm3.chrX	19,671,798 – 19,671,898	- - CDS="CDS;ID=CDS_CG12701:3_936;Name=vfl-cds;Parent=FBtr0074808;parent_type=mRNA" - - - - -	21480	19,671,798 – 19,671,898	-	6	102	56.24	-1.47	0.36	0.956343
15576	dm3.chrX	19,680,188 – 19,680,238	- - - - - - - -	21481	19,680,188 – 19,680,238	+	5	50	91.60	-1.71	0.95	0.936794
15580	dm3.chrX	19,736,709 – 19,736,808	- - - intron="intron;ID=intron_FBgn0261811:4_FBgn0261811:3;Name=pico-in;Parent=FBtr0303996;parent_type=mRNA" - - - -	21485	19,736,709 – 19,736,808	+	4	103	82.19	-2.25	0.78	0.956110
15580	dm3.chrX	19,736,709 – 19,736,808		21486	19,736,709 – 19,736,808	-	4	103	82.19	-1.97	0.81	0.930269
15581	dm3.chrX	19,738,778 – 19,738,874	- - - intron="intron;ID=intron_FBgn0261811:4_FBgn0261811:3;Name=pico-in;Parent=FBtr0303996;parent_type=mRNA" - - - -	21487	19,738,778 – 19,738,874	+	5	120	68.44	-1.72	0.53	0.901553
15583	dm3.chrX	19,770,781 – 19,770,839	- - - intron="intron;ID=intron_CG32529:2_CG32529:6;Name=CG32529-in;Parent=FBtr0074800;parent_type=mRNA" - - - -	21490	19,770,781 – 19,770,839	+	10	66	62.72	-1.11	0.56	0.989252
15583	dm3.chrX	19,770,781 – 19,770,839		21491	19,770,781 – 19,770,839	-	10	66	62.72	-1.40	0.41	0.952850
15584	dm3.chrX	19,775,060 – 19,775,153	- - - intron="intron;ID=intron_CG32529:2_CG32529:6;Name=CG32529-in;Parent=FBtr0074800;parent_type=mRNA" - - - -	21492	19,775,060 – 19,775,153	-	8	113	54.19	-1.79	0.33	0.979203
15586	dm3.chrX	19,778,751 – 19,778,858	- - - intron="intron;ID=intron_CG32529:2_CG32529:6;Name=CG32529-in;Parent=FBtr0074800;parent_type=mRNA" - - - -	21494	19,778,751 – 19,778,857	+	5	106	88.67	-2.26	0.84	0.952035
15586	dm3.chrX	19,778,751 – 19,778,858		21496	19,778,752 – 19,778,858	+	5	106	88.07	-2.07	0.85	0.936564
15588	dm3.chrX	19,789,971 – 19,790,065	- - - intron="intron;ID=intron_CG32529:4_CG32529:6;Name=CG32529-in;Parent=FBtr0074801;parent_type=mRNA" - - - -	21498	19,789,971 – 19,790,065	+	5	110	76.66	-2.70	0.54	0.982077
15589	dm3.chrX	19,792,135 – 19,792,195	- - - intron="intron;ID=intron_CG32529:4_CG32529:6;Name=CG32529-in;Parent=FBtr0074801;parent_type=mRNA" - - - -	21499	19,792,135 – 19,792,195	+	6	70	60.82	-1.64	0.40	0.959776
15599	dm3.chrX	19,871,729 – 19,871,849	- - - - - - - -	21510	19,871,729 – 19,871,849	-	5	120	89.31	-2.11	0.83	0.915866
15600	dm3.chrX	19,886,735 – 19,886,842	- - - - - - - -	21511	19,886,735 – 19,886,842	+	7	121	73.21	-2.38	0.68	0.997621
15600	dm3.chrX	19,886,735 – 19,886,842	- - - - - - - -	21512	19,886,735 – 19,886,842	-	7	121	73.21	-3.34	0.63	0.999662
15601	dm3.chrX	19,888,329 – 19,888,394	- - - - - - - -	21513	19,888,329 – 19,888,394	+	5	65	90.89	-3.66	0.97	0.998742
15601	dm3.chrX	19,888,329 – 19,888,394	- - - - - - - -	21514	19,888,329 – 19,888,394	-	5	65	90.89	-2.13	0.84	0.908873
15603	dm3.chrX	19,889,271 – 19,889,351	- - - - - - - -	21516	19,889,271 – 19,889,351	+	10	80	83.57	-2.43	0.78	0.992952
15603	dm3.chrX	19,889,271 – 19,889,351	- - - - - - - -	21517	19,889,271 – 19,889,351	-	10	80	83.57	-2.91	0.71	0.996881
15612	dm3.chrX	19,947,617 – 19,947,697	- - - - - - - -	21526	19,947,617 – 19,947,697	+	4	84	79.27	-1.64	0.80	0.904036
15616	dm3.chrX	19,970,294 – 19,970,438	- - - - - - - -	21530	19,970,294 – 19,970,404	-	3	118	82.49	-2.58	0.68	0.935636
15616	dm3.chrX	19,970,294 – 19,970,438	- - - - - - - -	21531	19,970,334 – 19,970,438	-	3	118	78.51	-2.20	0.70	0.920853
15617	dm3.chrX	19,983,742 – 19,983,878	- - - - - - - -	21532	19,983,742 – 19,983,850	+	5	120	91.13	-2.15	0.85	0.915672
15619	dm3.chrX	20,012,017 – 20,012,092	- - - - - - - -	21535	20,012,017 – 20,012,092	-	4	75	90.44	-2.97	0.79	0.981578
15622	dm3.chrX	20,047,031 – 20,047,143	- - - intron="intron;ID=intron_FBgn0031089:6_FBgn0031089:7;Name=CG9572-in;Parent=FBtr0070006,FBtr0303256,FBtr0303257;parent_type=mRNA" - - - -	21539	20,047,031 – 20,047,143	-	6	120	88.51	-2.45	0.79	0.958968
15624	dm3.chrX	20,054,694 – 20,054,783	- - - - - - - -	21541	20,054,694 – 20,054,783	-	3	100	85.00	-2.87	0.81	0.989187
15626	dm3.chrX	20,067,580 – 20,067,674	- - - - - - - -	21543	20,067,580 – 20,067,674	-	6	120	59.88	-1.32	0.56	0.990769
15630	dm3.chrX	20,107,432 – 20,107,578	- - - - - - - -	21547	20,107,432 – 20,107,578	+	6	158	69.55	-1.86	0.44	0.930699
15631	dm3.chrX	20,128,420 – 20,128,498	- - - - - - - -	21548	20,128,420 – 20,128,498	-	6	78	66.99	-1.50	0.46	0.941370
15637	dm3.chrX	20,149,453 – 20,149,588	- - - - - - - -	21555	20,149,453 – 20,149,553	+	4	113	52.02	-1.63	0.39	0.970875
				21556	20,149,453 – 20,149,553	-	4	113	52.02	-1.36	0.40	0.937765
				21557	20,149,487 – 20,149,588	+	4	110	53.69	-1.29	0.44	0.967187
				21558	20,149,487 – 20,149,588	-	4	110	53.69	-1.51	0.35	0.908593
15638	dm3.chrX	20,149,799 – 20,149,905	- - - - - - - -	21559	20,149,799 – 20,149,905	-	8	121	66.64	-2.12	0.39	0.976263
15642	dm3.chrX	20,185,667 – 20,185,767	- - - - - - - -	21563	20,185,667 – 20,185,767	+	4	108	62.30	-2.21	0.44	0.986115
15644	dm3.chrX	20,190,256 – 20,190,382	- - - - - - - -	21566	20,190,292 – 20,190,382	+	4	108	61.95	-3.13	0.24	0.942239
15645	dm3.chrX	20,193,810 – 20,193,906	- - - - - - - -	21567	20,193,810 – 20,193,906	-	8	96	95.65	-2.70	0.86	0.970709
15646	dm3.chrX	20,194,459 – 20,194,574	- - - - - - - -	21568	20,194,459 – 20,194,574	+	5	115	84.99	-2.28	0.83	0.975786
15652	dm3.chrX	20,213,158 – 20,213,225	- - - - - - - -	21574	20,213,158 – 20,213,225	+	11	68	90.72	-2.61	0.94	0.994146
15652	dm3.chrX	20,213,158 – 20,213,225	- - - - - - - -	21575	20,213,158 – 20,213,225	-	11	68	90.72	-2.24	0.93	0.985244
15658	dm3.chrX	20,251,408 – 20,251,469	- - - - - - - -	21583	20,251,408 – 20,251,469	-	7	64	73.19	-1.08	0.74	0.939880
15660	dm3.chrX	20,262,186 – 20,262,337	- - - - - - - -	21585	20,262,186 – 20,262,297	-	3	111	92.79	-2.78	0.81	0.954877
15669	dm3.chrX	20,307,226 – 20,307,326	- - - - - - - -	21596	20,307,226 – 20,307,326	-	5	124	54.44	-1.85	0.34	0.934375
15671	dm3.chrX	20,312,159 – 20,312,253	- - CDS="CDS;ID=CDS_FBgn0031116:3_897;Name=CG1695-cds;Parent=FBtr0077308;parent_type=mRNA" - - - - -	21598	20,312,159 – 20,312,253	+	14	120	78.91	-2.08	0.59	0.936147
15673	dm3.chrX	20,325,255 – 20,325,363	- - - - - - - -	21601	20,325,255 – 20,325,363	-	3	108	89.24	-2.36	0.84	0.941442
15674	dm3.chrX	20,326,191 – 20,326,301	- - - - - - - -	21603	20,326,191 – 20,326,301	-	3	112	47.31	-2.04	0.27	0.904945
15678	dm3.chrX	20,333,822 – 20,333,982	- - CDS="CDS;ID=CDS_FBgn0052506:5_963;Name=CG32506-cds;Parent=FBtr0300211;parent_type=mRNA" - - - - -	21608	20,333,883 – 20,333,982	+	13	112	77.96	-2.79	0.54	0.994303
15690	dm3.chrX	20,411,188 – 20,411,325	- - - intron="intron;ID=intron_FBgn0259162:1_FBgn0259162:2;Name=RunxB-in;Parent=FBtr0299603,FBtr0299604;parent_type=mRNA" - - - -	21625	20,411,227 – 20,411,325	+	7	106	67.67	-1.09	0.55	0.938526
15696	dm3.chrX	20,442,771 – 20,442,897	- - - - - - - -	21632	20,442,771 – 20,442,897	+	11	144	78.07	-2.36	0.58	0.982399
15696	dm3.chrX	20,442,771 – 20,442,897	- - - - - - - -	21633	20,442,771 – 20,442,897	-	11	144	78.07	-2.30	0.65	0.989495
15697	dm3.chrX	20,454,033 – 20,454,187	- - - - - - - -	21634	20,454,033 – 20,454,187	+	5	168	68.94	-2.21	0.45	0.973922
15699	dm3.chrX	20,478,475 – 20,478,576	- - - intron="intron;ID=intron_FBgn0083981:6_FBgn0083981:5;Name=RunxA-in;Parent=FBtr0110992;parent_type=mRNA" - - - -	21636	20,478,475 – 20,478,576	+	10	102	84.33	-2.22	0.74	0.973735
15701	dm3.chrX	20,490,688 – 20,490,808	- - - - - - - -	21638	20,490,688 – 20,490,808	+	12	120	94.81	-2.65	0.91	0.986051
15706	dm3.chrX	20,523,788 – 20,523,922	- - - - - - - -	21643	20,523,788 – 20,523,922	+	6	136	83.22	-2.63	0.60	0.943946
15709	dm3.chrX	20,536,612 – 20,536,708	- - - - - - - -	21646	20,536,612 – 20,536,708	+	4	100	66.33	-2.29	0.69	0.998008
15709	dm3.chrX	20,536,612 – 20,536,708	- - - - - - - -	21647	20,536,612 – 20,536,708	-	4	100	66.33	-2.25	0.73	0.998031
15712	dm3.chrX	20,554,543 – 20,554,609	- - - - - - - -	21650	20,554,543 – 20,554,609	-	9	73	72.05	-2.07	0.39	0.925198
15717	dm3.chrX	20,594,058 – 20,594,156	- - - - - - - -	21655	20,594,058 – 20,594,156	+	11	102	75.96	-1.67	0.63	0.978553
15718	dm3.chrX	20,600,663 – 20,600,772	- - - - - - - -	21657	20,600,663 – 20,600,772	+	5	120	91.31	-2.57	0.82	0.957506
15719	dm3.chrX	20,607,333 – 20,607,434	- - - - - - - -	21658	20,607,333 – 20,607,434	+	10	118	65.32	-1.90	0.36	0.947205
15720	dm3.chrX	20,615,125 – 20,615,222	- - - - - - - -	21659	20,615,125 – 20,615,222	+	4	120	78.99	-1.80	0.83	0.945515
15722	dm3.chrX	20,629,731 – 20,629,824	- - - - - - - -	21661	20,629,731 – 20,629,824	-	6	100	76.50	-2.02	0.66	0.976252
15725	dm3.chrX	20,643,027 – 20,643,117	- - - - - - - -	21665	20,643,027 – 20,643,117	-	12	116	55.60	-2.29	0.32	0.996393
15728	dm3.chrX	20,646,510 – 20,646,595	- - CDS="CDS;ID=CDS_FBgn0085387:4_954;Name=shakB-cds;Parent=FBtr0112569,FBtr0112570,FBtr0112571;parent_type=mRNA" - - - - -	21668	20,646,510 – 20,646,595	+	15	85	82.94	-2.09	0.58	0.925340
15728	dm3.chrX	20,646,510 – 20,646,595		21669	20,646,510 – 20,646,595	-	15	85	82.94	-2.01	0.61	0.931722
15735	dm3.chrX	20,698,531 – 20,698,592	- - - - - - - -	21676	20,698,531 – 20,698,592	-	6	61	81.20	-1.72	0.82	0.956746
15736	dm3.chrX	20,726,851 – 20,726,901	- - - - - - - -	21677	20,726,851 – 20,726,901	+	5	50	98.80	-1.72	1.02	0.961406
15740	dm3.chrX	20,736,216 – 20,736,332	- - CDS="CDS;ID=CDS_FBgn0262822:1_1032;Name=CG43193-cds;Parent=FBtr0306065;parent_type=mRNA" - - - - -	21685	20,736,216 – 20,736,332	-	3	116	80.35	-2.67	0.74	0.981478
15742	dm3.chrX	20,764,037 – 20,764,163	- - - - - - - -	21687	20,764,037 – 20,764,148	+	11	115	81.03	-2.69	0.51	0.971535
15742	dm3.chrX	20,764,037 – 20,764,163	- - - - - - - -	21689	20,764,055 – 20,764,163	+	12	118	87.47	-3.23	0.60	0.984218
15746	dm3.chrX	20,784,516 – 20,784,652	- - - - - - - -	21694	20,784,516 – 20,784,617	+	5	105	95.22	-2.77	0.81	0.943373
15747	dm3.chrX	20,784,820 – 20,784,996	- - - - - - - -	21696	20,784,820 – 20,784,933	+	4	117	91.45	-2.41	0.86	0.957928
15749	dm3.chrX	20,794,276 – 20,794,372	- - - - - - - -	21700	20,794,276 – 20,794,372	+	7	105	72.84	-1.79	0.64	0.988218
15749	dm3.chrX	20,794,276 – 20,794,372	- - - - - - - -	21701	20,794,276 – 20,794,372	-	7	105	72.84	-1.24	0.65	0.935341
15750	dm3.chrX	20,798,232 – 20,798,375	- - - - - - - -	21702	20,798,232 – 20,798,347	+	10	115	79.52	-3.04	0.81	0.998569
				21703	20,798,232 – 20,798,347	-	10	115	79.52	-2.36	0.75	0.992232
				21704	20,798,267 – 20,798,375	+	10	109	73.89	-2.45	0.62	0.998174
				21705	20,798,267 – 20,798,375	-	10	109	73.89	-1.63	0.66	0.984355
15751	dm3.chrX	20,800,913 – 20,801,003	- - - - - - - -	21706	20,800,913 – 20,801,003	+	4	93	77.54	-2.19	0.64	0.942801
15754	dm3.chrX	20,821,605 – 20,821,673	- - - - - - - -	21709	20,821,605 – 20,821,673	+	5	68	95.88	-2.50	0.86	0.939629
15754	dm3.chrX	20,821,605 – 20,821,673	- - - - - - - -	21710	20,821,605 – 20,821,673	-	5	68	95.88	-3.95	0.95	0.998430
15755	dm3.chrX	20,822,935 – 20,822,987	- - - - - - - -	21711	20,822,935 – 20,822,987	+	6	64	81.31	-1.91	0.75	0.914613
15758	dm3.chrX	20,847,273 – 20,847,378	- - - - - - - -	21715	20,847,273 – 20,847,378	+	8	120	80.95	-2.21	0.76	0.984697
15758	dm3.chrX	20,847,273 – 20,847,378	- - - - - - - -	21716	20,847,273 – 20,847,378	-	8	120	80.95	-2.67	0.60	0.984055
15759	dm3.chrX	20,849,504 – 20,849,563	- - - - - - - -	21717	20,849,504 – 20,849,563	+	6	68	73.23	-1.61	0.75	0.977005
15759	dm3.chrX	20,849,504 – 20,849,563	- - - - - - - -	21718	20,849,504 – 20,849,563	-	6	68	73.23	-1.82	0.64	0.972287
15763	dm3.chrX	20,874,899 – 20,875,016	- - - - - - - -	21722	20,874,899 – 20,874,989	+	12	106	74.84	-1.84	0.49	0.920067
15763	dm3.chrX	20,874,899 – 20,875,016	- - - - - - - -	21723	20,874,899 – 20,874,989	-	12	106	74.84	-2.57	0.51	0.994748
15766	dm3.chrX	20,936,423 – 20,936,537	- - - intron="intron;ID=intron_FBgn0052512:3_FBgn0052512:2;Name=CG32512-in;Parent=FBtr0077262;parent_type=mRNA" - - - -	21727	20,936,423 – 20,936,537	+	5	114	94.82	-2.44	0.86	0.941552
15766	dm3.chrX	20,936,423 – 20,936,537		21728	20,936,423 – 20,936,537	-	5	114	94.82	-2.10	0.91	0.936911
15768	dm3.chrX	20,943,142 – 20,943,251	- - - - - - - -	21730	20,943,142 – 20,943,251	+	5	117	89.52	-3.10	0.72	0.977372
15769	dm3.chrX	20,943,573 – 20,943,785	- - - - - - - -	21732	20,943,573 – 20,943,682	+	4	111	72.67	-2.44	0.51	0.950332
15772	dm3.chrX	20,965,298 – 20,965,404	- - CDS="CDS;ID=CDS_CG33670:1_936;Name=stg1-cds;Parent=FBtr0091649;parent_type=mRNA" - - - - -	21736	20,965,298 – 20,965,404	+	5	109	86.38	-2.81	0.67	0.962677
15772	dm3.chrX	20,965,298 – 20,965,404		21737	20,965,298 – 20,965,404	-	5	109	86.38	-2.35	0.82	0.971858
15775	dm3.chrX	20,970,552 – 20,970,672	- - CDS="CDS;ID=CDS_FBgn0031155:1_943;Name=CG15446-cds;Parent=FBtr0300353;parent_type=mRNA" intron="intron;ID=intron_CG33670:1_CG33670:2;Name=stg1-in;Parent=FBtr0091649;parent_type=mRNA" - - - -	21740	20,970,552 – 20,970,672	-	6	120	80.22	-2.00	0.68	0.947886
15777	dm3.chrX	20,991,638 – 20,991,737	- - - - - - - -	21742	20,991,638 – 20,991,737	+	6	100	78.52	-1.68	0.75	0.956758
15779	dm3.chrX	20,999,408 – 20,999,550	- - - intron="intron;ID=intron_FBgn0083956:1_FBgn0083956:3;Name=CG34120-in;Parent=FBtr0110827,FBtr0299591;parent_type=mRNA" - - - -	21746	20,999,446 – 20,999,550	+	5	113	79.20	-1.96	0.79	0.964207
15780	dm3.chrX	21,004,521 – 21,004,643	- - CDS="CDS;ID=CDS_FBgn0083956:8_925;Name=CG34120-cds;Parent=FBtr0110826;parent_type=mRNA" - - - - -	21747	21,004,521 – 21,004,643	+	7	147	70.10	-2.20	0.52	0.989860
15780	dm3.chrX	21,004,521 – 21,004,643		21748	21,004,521 – 21,004,643	-	7	147	70.10	-2.17	0.44	0.960232
15786	dm3.chrX	21,050,727 – 21,050,893	- - - - - - - -	21755	21,050,727 – 21,050,831	-	6	120	82.07	-2.32	0.84	0.988004
15788	dm3.chrX	21,067,162 – 21,067,275	- - - - - - - -	21759	21,067,163 – 21,067,275	+	5	120	82.52	-2.11	0.70	0.906439
15791	dm3.chrX	21,081,328 – 21,081,423	- - - intron="intron;ID=intron_FBgn0052521:3_FBgn0052521:2;Name=CG32521-in;Parent=FBtr0077236;parent_type=mRNA" - - - -	21762	21,081,328 – 21,081,423	+	5	113	60.22	-1.41	0.41	0.934600
15794	dm3.chrX	21,099,831 – 21,099,956	- - - intron="intron;ID=intron_FBgn0052521:6_FBgn0052521:5;Name=CG32521-in;Parent=FBtr0077235;parent_type=mRNA" - - - -	21768	21,099,866 – 21,099,956	-	5	90	92.34	-4.56	0.91	0.999009
15795	dm3.chrX	21,108,802 – 21,108,951	- - - intron="intron;ID=intron_FBgn0052521:6_FBgn0052521:5;Name=CG32521-in;Parent=FBtr0077235;parent_type=mRNA" - - - -	21769	21,108,802 – 21,108,951	-	10	156	72.44	-1.82	0.47	0.956652
15797	dm3.chrX	21,117,255 – 21,117,358	- - - intron="intron;ID=intron_FBgn0052521:6_FBgn0052521:5;Name=CG32521-in;Parent=FBtr0077235;parent_type=mRNA" - - - -	21771	21,117,255 – 21,117,358	-	8	104	65.16	-0.95	0.51	0.964379
15798	dm3.chrX	21,127,494 – 21,127,575	- - - intron="intron;ID=intron_FBgn0052521:6_FBgn0052521:5;Name=CG32521-in;Parent=FBtr0077235;parent_type=mRNA" - - - -	21772	21,127,494 – 21,127,575	-	11	86	82.44	-2.56	0.53	0.956974
15801	dm3.chrX	21,150,767 – 21,150,860	- - - intron="intron;ID=intron_FBgn0052521:7_FBgn0052521:6;Name=CG32521-in;Parent=FBtr0077236,FBtr0077234,FBtr0077235;parent_type=mRNA" - - - -	21776	21,150,767 – 21,150,859	-	4	93	75.72	-3.06	0.42	0.967529
15801	dm3.chrX	21,150,767 – 21,150,860		21777	21,150,767 – 21,150,860	-	4	94	75.99	-3.11	0.42	0.970494
15803	dm3.chrX	21,172,723 – 21,172,821	- - - - - - - -	21779	21,172,723 – 21,172,816	-	5	102	83.45	-1.87	0.86	0.947431
15803	dm3.chrX	21,172,723 – 21,172,821	- - - - - - - -	21780	21,172,723 – 21,172,821	-	5	102	83.75	-1.75	0.83	0.900659
15807	dm3.chrX	21,218,431 – 21,218,529	- - - intron="intron;ID=intron_FBgn0015527:3_FBgn0015527:2;Name=pen-in;Parent=FBtr0077223;parent_type=mRNA" - - - -	21785	21,218,431 – 21,218,529	+	4	98	73.58	-2.05	0.68	0.979004
15808	dm3.chrX	21,220,883 – 21,220,981	- - - - - - - -	21786	21,220,883 – 21,220,981	-	5	111	73.35	-2.30	0.55	0.973365
15810	dm3.chrX	21,238,664 – 21,238,754	- - - intron="intron;ID=intron_CG1414:2_CG1414:3;Name=bbx-in;Parent=FBtr0100598;parent_type=mRNA" - - - -	21788	21,238,664 – 21,238,754	+	6	100	81.36	-2.34	0.71	0.975271
15811	dm3.chrX	21,240,579 – 21,240,673	- - - intron="intron;ID=intron_CG1414:6_CG1414:3;Name=bbx-in;Parent=FBtr0100599;parent_type=mRNA" - - - -	21790	21,240,579 – 21,240,673	-	7	97	80.52	-2.25	0.64	0.946848
15818	dm3.chrX	21,278,103 – 21,278,209	- - - - - - - -	21798	21,278,103 – 21,278,209	+	4	120	66.28	-2.29	0.39	0.938594
15819	dm3.chrX	21,288,077 – 21,288,183	- - - - - - - -	21799	21,288,077 – 21,288,183	-	12	111	89.50	-2.79	0.69	0.963913
15821	dm3.chrX	21,313,286 – 21,313,389	- - - intron="intron;ID=intron_FBgn0259245:10_FBgn0259245:9;Name=CG42343-in;Parent=FBtr0299898,FBtr0299901;parent_type=mRNA" - - - -	21801	21,313,286 – 21,313,389	+	7	108	55.17	-2.50	0.14	0.911128
15822	dm3.chrX	21,315,596 – 21,315,686	- - - intron="intron;ID=intron_FBgn0259245:11_FBgn0259245:10;Name=CG42343-in;Parent=FBtr0299898,FBtr0299899;parent_type=mRNA" - - - -	21803	21,315,596 – 21,315,686	-	5	90	66.70	-2.93	0.48	0.999140
15824	dm3.chrX	21,318,061 – 21,318,168	- - - intron="intron;ID=intron_FBgn0259245:11_FBgn0259245:10;Name=CG42343-in;Parent=FBtr0299898,FBtr0299899;parent_type=mRNA" - - - -	21806	21,318,061 – 21,318,168	-	5	107	88.35	-2.68	0.76	0.966198
15831	dm3.chrX	21,363,459 – 21,363,595	- - - - - - - -	21815	21,363,459 – 21,363,560	-	3	101	73.79	-2.24	0.62	0.923785
15839	dm3.chrX	21,433,513 – 21,433,607	- - - - - - - -	21826	21,433,513 – 21,433,607	+	5	109	80.62	-1.82	0.74	0.930453
15842	dm3.chrX	21,447,125 – 21,447,251	- - - - - - - -	21831	21,447,142 – 21,447,246	-	5	114	76.28	-2.87	0.59	0.993361
15842	dm3.chrX	21,447,125 – 21,447,251	- - - - - - - -	21833	21,447,148 – 21,447,251	-	5	113	77.94	-2.25	0.65	0.958855
15850	dm3.chrX	21,508,804 – 21,508,885	- - - - - - - -	21842	21,508,804 – 21,508,885	+	3	82	54.29	-2.47	0.59	0.999606
15850	dm3.chrX	21,508,804 – 21,508,885	- - - - - - - -	21843	21,508,804 – 21,508,885	-	3	82	54.29	-2.38	0.45	0.997571
15852	dm3.chrX	21,572,357 – 21,572,530	- - - - - - - -	21845	21,572,357 – 21,572,530	-	3	175	55.45	-3.03	0.33	0.994723
15853	dm3.chrX	21,575,400 – 21,575,526	- - - - - - - -	21846	21,575,400 – 21,575,526	+	3	128	48.77	-1.57	0.40	0.940038
15854	dm3.chrX	21,624,699 – 21,624,751	- - - - - - - -	21847	21,624,699 – 21,624,751	-	13	52	58.60	-0.51	0.51	0.956435
15855	dm3.chrX	21,658,794 – 21,658,866	- - - - - - - -	21848	21,658,794 – 21,658,866	-	6	72	54.68	-2.12	0.30	0.991419
15856	dm3.chrX	21,664,635 – 21,664,827	- - - - - - - -	21850	21,664,635 – 21,664,749	-	3	119	56.09	-2.13	0.50	0.995007
15856	dm3.chrX	21,664,635 – 21,664,827	- - - - - - - -	21851	21,664,671 – 21,664,787	-	3	119	62.25	-1.36	0.76	0.978824
15858	dm3.chrX	21,667,045 – 21,667,192	- - - - - - - -	21854	21,667,045 – 21,667,192	-	4	152	76.87	-2.16	0.62	0.913727
15860	dm3.chrX	21,774,085 – 21,774,189	- - - - - - - -	21856	21,774,085 – 21,774,189	-	4	110	62.73	-1.47	0.52	0.967276
15862	dm3.chrX	21,792,524 – 21,792,624	- - - - - - - -	21858	21,792,524 – 21,792,624	+	5	101	63.42	-1.40	0.53	0.977186
15866	dm3.chrX	21,800,169 – 21,800,232	- - - - - - - -	21864	21,800,169 – 21,800,232	-	3	63	55.03	-1.06	0.56	0.951540
15871	dm3.chrX	21,902,724 – 21,902,795	- - - intron="intron;ID=intron_FBgn0027279:11_FBgn0027279:12;Name=l(1)G0196-in;Parent=FBtr0299526;parent_type=mRNA" - - - -	21869	21,902,724 – 21,902,795	+	6	72	72.00	-1.50	0.61	0.966004
15875	dm3.chrX	21,983,799 – 21,983,891	- - - - - - - -	21874	21,983,799 – 21,983,891	-	7	106	78.02	-1.84	0.67	0.921664
15878	dm3.chrX	22,062,248 – 22,062,354	- - - - - - - -	21878	22,062,248 – 22,062,354	+	5	108	90.82	-2.27	0.81	0.906456
15882	dm3.chrX	22,076,250 – 22,076,315	- - - - - - - -	21882	22,076,250 – 22,076,315	-	5	65	84.62	-2.10	0.73	0.905130
15884	dm3.chrX	22,079,156 – 22,079,255	- - - - - - - -	21885	22,079,156 – 22,079,255	+	3	99	88.93	-2.06	0.86	0.905948
15887	dm3.chrX	22,129,043 – 22,129,141	- - - - - - - -	21888	22,129,043 – 22,129,141	+	4	99	52.83	-1.85	0.32	0.945932
15888	dm3.chrX	22,162,696 – 22,162,786	- - - - - - - -	21890	22,162,696 – 22,162,786	-	5	90	76.64	-2.32	0.54	0.933901
15891	dm3.chrX	22,218,639 – 22,218,721	- - - - - - - -	21893	22,218,639 – 22,218,721	+	5	87	73.80	-1.52	0.80	0.964033
15895	dm3.chrX	22,261,031 – 22,261,088	- - - - - - - -	21897	22,261,031 – 22,261,088	+	5	60	76.86	-2.31	0.78	0.992522
15895	dm3.chrX	22,261,031 – 22,261,088	- - - - - - - -	21898	22,261,031 – 22,261,088	-	5	60	76.86	-2.11	0.62	0.948550
15899	dm3.chrX	22,274,045 – 22,274,188	- - - intron="intron;ID=intron_FBgn0259677:2_FBgn0259677:3;Name=CG42346-in;Parent=FBtr0299928;parent_type=mRNA" - - - -	21904	22,274,045 – 22,274,188	+	5	154	62.65	-1.84	0.50	0.994367
15903	dm3.chrX	22,338,909 – 22,339,022	- - - - - - - -	21910	22,338,909 – 22,339,022	-	12	120	79.83	-1.73	0.74	0.956313
15909	dm3.chrYHet	79,970 – 80,055	- - - - - - - -	21916	79,970 – 80,055	+	5	98	52.31	-2.24	0.49	0.999549
15909	dm3.chrYHet	79,970 – 80,055	- - - - - - - -	21917	79,970 – 80,055	-	5	98	52.31	-3.45	0.68	0.999972
15910	dm3.chrYHet	152,971 – 153,092	- - - - - - - -	21920	152,996 – 153,092	+	4	114	59.14	-1.87	0.62	0.997018
15910	dm3.chrYHet	152,971 – 153,092	- - - - - - - -	21921	152,996 – 153,092	-	4	114	59.14	-1.48	0.51	0.960036
15911	dm3.chrYHet	164,789 – 164,893	- - - intron="intron;ID=intron_CG40440:161863-162113_CG40440:191730-191814;Name=Ppr-Y-in;Parent=FBtr0113889;parent_type=mRNA" - - - -	21923	164,789 – 164,893	-	4	104	65.87	-2.49	0.51	0.996763
15912	dm3.chrYHet	308,010 – 308,079	- - - - - - - -	21924	308,010 – 308,079	+	3	70	65.66	-2.13	0.59	0.971092

Generated by rnazIndex.pl (part of RNAz 1.0) on Wed Apr 20 11:05:43 2011