Index

Locus ID	Seq. ID	Location	Custom annotation	Window ID	Location	Strand	N	Length	Mean pairwise ID	z	SCI	P
1	dm3.chr2LHet	36,615 – 36,721	- - - - - - - -	1	36,615 – 36,721	-	3	106	60.69	-0.95	0.50	0.515802
2	dm3.chr2LHet	56,175 – 56,286	- - - - - - - -	2	56,175 – 56,228	-	5	55	71.35	-1.22	0.68	0.924536
2	dm3.chr2LHet	56,175 – 56,286	- - - - - - - -	3	56,228 – 56,286	-	5	70	54.83	-0.43	0.45	0.538424
3	dm3.chr2LHet	56,457 – 56,517	- - - - - - - -	4	56,457 – 56,517	+	5	62	76.25	-1.84	0.59	0.897052
4	dm3.chr2LHet	121,787 – 121,907	- - - - - - - -	5	121,787 – 121,907	+	4	120	61.94	-1.73	0.61	0.996050
4	dm3.chr2LHet	121,787 – 121,907	- - - - - - - -	6	121,787 – 121,907	-	4	120	61.94	-1.10	0.74	0.986738
5	dm3.chr2LHet	181,214 – 181,304	- - - - - - - -	7	181,214 – 181,304	+	4	102	65.29	-1.88	0.50	0.980030
5	dm3.chr2LHet	181,214 – 181,304	- - - - - - - -	8	181,214 – 181,304	-	4	102	65.29	-1.86	0.54	0.987914
6	dm3.chr2LHet	258,180 – 258,250	- - - - - - - -	9	258,180 – 258,250	+	5	70	58.35	-2.24	0.59	0.999720
6	dm3.chr2LHet	258,180 – 258,250	- - - - - - - -	10	258,180 – 258,250	-	5	70	58.35	-1.67	0.31	0.840669
7	dm3.chr2LHet	292,555 – 292,670	- - - - - - - -	11	292,555 – 292,666	+	4	114	60.70	-2.07	0.30	0.775806
7	dm3.chr2LHet	292,555 – 292,670	- - - - - - - -	12	292,564 – 292,670	+	4	109	60.06	-2.15	0.29	0.837298
8	dm3.chr2LHet	311,360 – 311,412	- - - - - - - -	13	311,360 – 311,412	+	6	56	53.38	-1.22	0.59	0.998114
9	dm3.chr2LHet	316,478 – 316,591	- - - - - - - -	14	316,478 – 316,591	+	3	118	59.31	-1.55	0.49	0.884508
9	dm3.chr2LHet	316,478 – 316,591	- - - - - - - -	15	316,478 – 316,591	-	3	118	59.31	-1.29	0.53	0.845792
10	dm3.chr2LHet	354,935 – 355,038	- - - - - - - -	16	354,935 – 355,038	-	3	113	51.37	-0.42	0.51	0.560288
11	dm3.chr2L	17,778 – 17,878	- - - intron="intron;ID=intron_CG2671:12_CG2671:11;Name=l(2)gl-in;Parent=FBtr0078171;parent_type=mRNA" - - - -	17	17,778 – 17,878	-	5	101	54.19	-1.77	0.23	0.516824
12	dm3.chr2L	19,501 – 19,654	- - - - - - - -	18	19,501 – 19,654	+	5	159	67.33	-2.11	0.51	0.992602
13	dm3.chr2L	24,690 – 24,741	- - - intron="intron;ID=intron_FBgn0031209:5_FBgn0031209:4;Name=Ir21a-in;Parent=FBtr0113008;parent_type=mRNA" - - - -	19	24,690 – 24,741	-	3	51	97.39	-1.34	1.02	0.911107
14	dm3.chr2L	41,296 – 41,468	- - - intron="intron;ID=intron_FBgn0051973:15_FBgn0051973:14;Name=Cda5-in;Parent=FBtr0078163,FBtr0078164,FBtr0113415,FBtr0113416;parent_type=mRNA" - - - -	20	41,296 – 41,403	+	8	119	70.13	-1.79	0.46	0.923059
				21	41,332 – 41,443	+	8	120	85.67	-1.94	0.78	0.898055
				22	41,332 – 41,443	-	8	120	85.67	-2.13	0.80	0.951734
				23	41,363 – 41,468	+	8	121	80.62	-1.80	0.64	0.820223
				24	41,363 – 41,468	-	8	121	80.62	-1.69	0.68	0.834153
15	dm3.chr2L	43,502 – 43,631	- - - intron="intron;ID=intron_FBgn0051973:15_FBgn0051973:14;Name=Cda5-in;Parent=FBtr0078163,FBtr0078164,FBtr0113415,FBtr0113416;parent_type=mRNA" - - - -	25	43,502 – 43,597	+	4	97	89.41	-1.98	0.80	0.784397
15	dm3.chr2L	43,502 – 43,631		26	43,538 – 43,631	+	5	113	68.02	-1.30	0.51	0.668174
16	dm3.chr2L	47,774 – 47,879	- - - intron="intron;ID=intron_FBgn0051973:15_FBgn0051973:14;Name=Cda5-in;Parent=FBtr0078163,FBtr0078164,FBtr0113415,FBtr0113416;parent_type=mRNA" - - - -	27	47,774 – 47,879	+	3	112	60.60	-1.10	0.51	0.583321
17	dm3.chr2L	47,926 – 48,023	- - - intron="intron;ID=intron_FBgn0051973:15_FBgn0051973:14;Name=Cda5-in;Parent=FBtr0078163,FBtr0078164,FBtr0113415,FBtr0113416;parent_type=mRNA" - - - -	28	47,926 – 48,023	+	4	99	63.28	-1.41	0.40	0.637089
17	dm3.chr2L	47,926 – 48,023		29	47,926 – 48,023	-	4	99	63.28	-1.41	0.38	0.531272
18	dm3.chr2L	73,228 – 73,397	- - - intron="intron;ID=intron_FBgn0031213:1_FBgn0031213:4;Name=galectin-in;Parent=FBtr0078101;parent_type=mRNA" - - - -	30	73,228 – 73,334	-	5	116	64.74	-2.97	0.35	0.995075
18	dm3.chr2L	73,228 – 73,397		31	73,334 – 73,397	-	5	63	88.57	-2.49	0.68	0.849417
19	dm3.chr2L	92,599 – 92,691	- - - - - - - -	32	92,599 – 92,691	+	9	106	76.60	-1.98	0.45	0.723271
19	dm3.chr2L	92,599 – 92,691	- - - - - - - -	33	92,599 – 92,691	-	9	106	76.60	-2.99	0.37	0.959955
20	dm3.chr2L	127,044 – 127,138	- - - intron="intron;ID=intron_FBgn0025683:9_FBgn0025683:8;Name=CG3164-in;Parent=FBtr0078153,FBtr0078155;parent_type=mRNA" - - - -	34	127,044 – 127,138	+	8	120	71.32	-1.56	0.43	0.519754
21	dm3.chr2L	135,480 – 135,598	- - - - - - - -	35	135,480 – 135,598	-	9	119	66.94	-1.69	0.53	0.995518
22	dm3.chr2L	136,632 – 136,733	- - - - - - - -	36	136,632 – 136,733	+	5	101	65.18	-1.81	0.55	0.974761
23	dm3.chr2L	143,193 – 143,290	- - - - - - - -	37	143,193 – 143,290	+	4	120	75.76	-1.78	0.66	0.887984
24	dm3.chr2L	146,099 – 146,196	- - - intron="intron;ID=intron_FBgn0259818:2_FBgn0259818:1;Name=CG42399-in;Parent=FBtr0301929;parent_type=mRNA" - - - -	38	146,099 – 146,196	-	7	114	71.58	-1.97	0.50	0.924264
25	dm3.chr2L	175,350 – 175,453	- - CDS="CDS;ID=CDS_FBgn0016977:4_872;Name=spen-cds;Parent=FBtr0306341;parent_type=mRNA" - - - - -	39	175,350 – 175,446	+	12	108	72.39	-1.40	0.53	0.918272
				40	175,350 – 175,446	-	12	108	72.39	-1.75	0.53	0.975215
				41	175,360 – 175,453	+	12	105	71.97	-1.47	0.56	0.960354
				42	175,360 – 175,453	-	12	105	71.97	-2.05	0.55	0.993772
26	dm3.chr2L	178,464 – 178,571	- - - intron="intron;ID=intron_FBgn0016977:4_FBgn0016977:6;Name=spen-in;Parent=FBtr0306341;parent_type=mRNA" - - - -	43	178,464 – 178,571	+	3	109	87.77	-3.30	0.74	0.988643
27	dm3.chr2L	212,102 – 212,196	- - - - - - - -	44	212,102 – 212,196	+	7	97	78.46	-0.96	0.71	0.604851
28	dm3.chr2L	224,212 – 224,311	- - - - - - - -	45	224,212 – 224,311	+	5	107	86.34	-2.42	0.79	0.967041
29	dm3.chr2L	224,422 – 224,513	- - - - - - - -	46	224,422 – 224,513	-	8	109	70.60	-2.05	0.35	0.738621
30	dm3.chr2L	226,122 – 226,233	- - CDS="CDS;ID=CDS_FBgn0086902:8_784;Name=kis-cds;Parent=FBtr0299837;parent_type=mRNA" - - - - -	47	226,122 – 226,233	+	12	120	83.27	-2.47	0.41	0.520743
31	dm3.chr2L	231,514 – 231,576	- - - intron="intron;ID=intron_FBgn0086902:15_FBgn0086902:14;Name=kis-in;Parent=FBtr0078144,FBtr0299837;parent_type=mRNA" - - - -	48	231,514 – 231,576	+	12	66	86.50	-1.00	0.91	0.721430
32	dm3.chr2L	242,095 – 242,198	- - - - - - - -	49	242,095 – 242,195	+	6	101	77.64	-1.26	0.70	0.792030
				50	242,095 – 242,195	-	6	101	77.64	-0.98	0.74	0.678575
				51	242,098 – 242,198	-	6	101	76.96	-1.20	0.73	0.839518
33	dm3.chr2L	243,033 – 243,125	FBnoncoding="pre_miRNA;ID=FBtr0304343;Name=mir-965-RM;Parent=FBgn0262252;Alias=CR42959-RM;Dbxref=FlyBase_Annotation_IDs:CR42959-RM,miRBase:MI0005821" - - intron="intron;ID=intron_FBgn0086902:20_FBgn0086902:19;Name=kis-in;Parent=FBtr0078144,FBtr0299837;parent_type=mRNA" - - - "mirBase_v16=dme-mir-965\|3.6e-47"	52	243,033 – 243,125	+	13	94	78.90	-1.99	0.70	0.990483
33	dm3.chr2L	243,033 – 243,125		53	243,033 – 243,125	-	13	94	78.90	-3.85	0.78	0.999712
34	dm3.chr2L	249,542 – 249,639	- - - intron="intron;ID=intron_FBgn0086902:20_FBgn0086902:19;Name=kis-in;Parent=FBtr0078144,FBtr0299837;parent_type=mRNA" - - - -	54	249,542 – 249,639	+	5	97	80.31	-2.51	0.65	0.975205
34	dm3.chr2L	249,542 – 249,639		55	249,542 – 249,639	-	5	97	80.31	-2.17	0.62	0.899031
35	dm3.chr2L	268,036 – 268,115	- - - intron="intron;ID=intron_CG3645:1_CG3645:6;Name=CG3645-in;Parent=FBtr0078141;parent_type=mRNA" - - - -	56	268,036 – 268,115	+	3	79	75.53	-2.25	0.51	0.732771
35	dm3.chr2L	268,036 – 268,115		57	268,036 – 268,115	-	3	79	75.53	-2.39	0.55	0.894823
36	dm3.chr2L	278,334 – 278,461	- - - intron="intron;ID=intron_CG11561:2_CG11561:3;Name=smo-in;Parent=FBtr0078129;parent_type=mRNA" - - - -	58	278,334 – 278,461	+	5	152	77.05	-2.22	0.51	0.848784
37	dm3.chr2L	286,649 – 286,753	- - - - - - - -	59	286,649 – 286,753	-	7	105	72.71	-1.65	0.55	0.971532
38	dm3.chr2L	301,073 – 301,164	- - - intron="intron;ID=intron_CG2699:2_CG2699:3;Name=Pi3K21B-in;Parent=FBtr0078132;parent_type=mRNA" - - - -	60	301,073 – 301,164	-	5	109	73.88	-1.85	0.47	0.595610
39	dm3.chr2L	327,175 – 327,265	- - - intron="intron;ID=intron_CG31920:1_CG31920:2;Name=CG31920-in;Parent=FBtr0078097;parent_type=mRNA" - - - -	61	327,175 – 327,265	-	5	97	88.47	-2.09	0.80	0.887067
40	dm3.chr2L	327,305 – 327,413	- - - intron="intron;ID=intron_CG31920:1_CG31920:2;Name=CG31920-in;Parent=FBtr0078097;parent_type=mRNA" - - - -	62	327,305 – 327,413	-	5	120	81.00	-1.34	0.74	0.522130
41	dm3.chr2L	333,225 – 333,316	- - - - - - - -	63	333,225 – 333,316	-	7	99	66.57	-1.45	0.39	0.810450
42	dm3.chr2L	335,064 – 335,159	- - - intron="intron;ID=intron_CG4574:4_CG4574:5;Name=Plc21C-in;Parent=FBtr0078049,FBtr0078050,FBtr0078051,FBtr0078047,FBtr0078048;parent_type=mRNA" - - - -	64	335,064 – 335,159	-	6	112	74.27	-1.69	0.44	0.507233
43	dm3.chr2L	337,339 – 337,391	- - - intron="intron;ID=intron_CG4574:8_CG4574:9;Name=Plc21C-in;Parent=FBtr0078049,FBtr0078050,FBtr0078051,FBtr0078047,FBtr0078048;parent_type=mRNA" - - - -	65	337,339 – 337,391	+	5	52	97.69	-0.81	1.02	0.682366
44	dm3.chr2L	340,754 – 340,851	- - CDS="CDS;ID=CDS_CG4574:11_747;Name=Plc21C-cds;Parent=FBtr0078049,FBtr0078050,FBtr0078051,FBtr0078047,FBtr0078048;parent_type=mRNA" - - - - -	66	340,754 – 340,851	+	5	97	91.65	-2.28	0.85	0.940148
45	dm3.chr2L	346,367 – 346,441	- - - - - - - -	67	346,367 – 346,441	+	6	78	71.58	-1.54	0.62	0.964656
46	dm3.chr2L	370,176 – 370,231	- - - - - - - -	68	370,176 – 370,231	-	3	55	96.36	-1.29	0.93	0.540482
47	dm3.chr2L	386,100 – 386,232	- - - intron="intron;ID=intron_CG3935:3_CG3935:4;Name=al-in;Parent=FBtr0078053;parent_type=mRNA" - - - -	69	386,100 – 386,203	+	12	117	77.18	-2.47	0.54	0.987443
				70	386,100 – 386,203	-	12	117	77.18	-2.39	0.44	0.929803
				71	386,128 – 386,232	+	12	120	70.72	-2.66	0.54	0.999196
				72	386,128 – 386,232	-	12	120	70.72	-2.44	0.47	0.996358
48	dm3.chr2L	388,424 – 388,515	- - - - - - - -	73	388,424 – 388,515	-	12	107	77.23	-1.82	0.61	0.963965
49	dm3.chr2L	389,003 – 389,115	- - - - - - - -	74	389,003 – 389,095	-	11	109	83.21	-1.57	0.69	0.737449
49	dm3.chr2L	389,003 – 389,115	- - - - - - - -	75	389,022 – 389,115	+	12	93	89.24	-1.71	0.77	0.670707
50	dm3.chr2L	392,474 – 392,572	- - - - - - - -	76	392,474 – 392,572	+	5	98	96.22	-3.16	0.95	0.995910
51	dm3.chr2L	426,999 – 427,096	- - - - - - - -	77	426,999 – 427,096	-	6	104	80.22	-3.24	0.55	0.993290
52	dm3.chr2L	430,709 – 430,817	- - - - - - - -	78	430,709 – 430,817	-	5	120	82.15	-2.10	0.72	0.925445
53	dm3.chr2L	431,147 – 431,333	- - - - - - - -	79	431,147 – 431,333	-	5	187	96.41	-1.64	0.90	0.684159
54	dm3.chr2L	433,965 – 434,076	- - - intron="intron;ID=intron_FBgn0004583:1_FBgn0004583:2;Name=ex-in;Parent=FBtr0078059;parent_type=mRNA" - - - -	80	433,965 – 434,055	+	6	92	93.31	-1.93	0.93	0.942183
				81	433,965 – 434,055	-	6	92	93.31	-2.24	0.91	0.965623
				82	433,981 – 434,076	+	4	95	97.89	-2.07	0.96	0.952107
				83	433,981 – 434,076	-	4	95	97.89	-2.04	0.95	0.939856
55	dm3.chr2L	434,793 – 434,893	- - - intron="intron;ID=intron_FBgn0004583:1_FBgn0004583:2;Name=ex-in;Parent=FBtr0078059;parent_type=mRNA" - - - -	84	434,793 – 434,893	+	5	114	76.70	-1.69	0.54	0.542517
56	dm3.chr2L	435,359 – 435,492	- - - intron="intron;ID=intron_FBgn0004583:1_FBgn0004583:2;Name=ex-in;Parent=FBtr0078059;parent_type=mRNA" - - - -	85	435,359 – 435,492	-	4	133	82.76	-1.83	0.65	0.544165
57	dm3.chr2L	437,961 – 438,051	- - - intron="intron;ID=intron_FBgn0004583:1_FBgn0004583:2;Name=ex-in;Parent=FBtr0078059;parent_type=mRNA" - - - -	86	437,961 – 438,051	-	4	90	94.57	-1.28	0.94	0.658078
58	dm3.chr2L	442,157 – 442,208	- - - intron="intron;ID=intron_FBgn0004583:3_FBgn0004583:4;Name=ex-in;Parent=FBtr0078059;parent_type=mRNA" - - - -	87	442,157 – 442,208	+	4	51	86.27	-1.60	0.77	0.546158
59	dm3.chr2L	448,086 – 448,190	- - - - - - - -	88	448,086 – 448,190	+	8	106	68.73	-2.73	0.20	0.733838
60	dm3.chr2L	454,740 – 454,800	- - - - - - - -	89	454,740 – 454,800	+	5	60	68.83	-1.90	0.50	0.975872
60	dm3.chr2L	454,740 – 454,800	- - - - - - - -	90	454,740 – 454,800	-	5	60	68.83	-1.41	0.49	0.850685
61	dm3.chr2L	464,856 – 464,950	- - CDS="CDS;ID=CDS_CG4297:2_718;Name=CG4297-cds;Parent=FBtr0078085;parent_type=mRNA" - - - - -	91	464,856 – 464,950	+	7	115	74.17	-1.70	0.54	0.786112
61	dm3.chr2L	464,856 – 464,950		92	464,856 – 464,950	-	7	115	74.17	-1.59	0.57	0.790313
62	dm3.chr2L	477,695 – 477,782	- - CDS="CDS;ID=CDS_CG4427:3_739;Name=cbt-cds;Parent=FBtr0078084;parent_type=mRNA" - - - - -	93	477,695 – 477,782	-	10	98	54.05	-0.94	0.36	0.866833
63	dm3.chr2L	490,028 – 490,120	- - - - - - - -	94	490,028 – 490,120	+	8	99	67.97	-2.36	0.22	0.618180
64	dm3.chr2L	493,246 – 493,304	- - - - - - - -	95	493,246 – 493,304	+	5	58	100.00	-1.75	1.00	0.939583
64	dm3.chr2L	493,246 – 493,304	- - - - - - - -	96	493,246 – 493,304	-	5	58	100.00	-1.98	1.00	0.964637
65	dm3.chr2L	494,829 – 494,956	- - - - - - - -	97	494,829 – 494,920	-	6	101	68.14	-1.65	0.41	0.823531
65	dm3.chr2L	494,829 – 494,956	- - - - - - - -	98	494,853 – 494,956	-	5	104	69.87	-0.95	0.61	0.794399
66	dm3.chr2L	495,956 – 496,074	- - - - - - - -	99	495,956 – 496,049	+	6	95	81.37	-3.56	0.71	0.998881
66	dm3.chr2L	495,956 – 496,074	- - - - - - - -	100	495,975 – 496,074	+	6	99	82.20	-1.91	0.79	0.953422
67	dm3.chr2L	518,190 – 518,283	- - - - - - - -	101	518,190 – 518,283	+	8	110	71.47	-3.31	0.27	0.965641
68	dm3.chr2L	519,304 – 519,396	- - - - - - - -	102	519,304 – 519,396	-	12	114	78.15	-2.10	0.66	0.985596
69	dm3.chr2L	528,275 – 528,355	- - - intron="intron;ID=intron_CG2762:2_CG2762:3;Name=ush-in;Parent=FBtr0078063;parent_type=mRNA" - - - -	103	528,275 – 528,355	-	5	81	84.69	-1.54	0.74	0.559294
70	dm3.chr2L	533,374 – 533,478	- - - intron="intron;ID=intron_CG2762:2_CG2762:3;Name=ush-in;Parent=FBtr0078063;parent_type=mRNA" - - - -	104	533,374 – 533,478	+	7	107	59.51	-1.40	0.27	0.655935
71	dm3.chr2L	541,402 – 541,546	- - - - - - - -	105	541,402 – 541,520	+	5	120	89.52	-2.55	0.78	0.953793
				106	541,402 – 541,520	-	5	120	89.52	-3.05	0.74	0.982474
				107	541,428 – 541,546	+	5	120	87.15	-1.71	0.74	0.542893
				108	541,428 – 541,546	-	5	120	87.15	-2.31	0.85	0.974116
72	dm3.chr2L	553,467 – 553,568	- - - - - - - -	109	553,467 – 553,568	-	5	101	79.39	-2.64	0.45	0.830199
73	dm3.chr2L	569,725 – 569,830	- - CDS="CDS;ID=CDS_FBgn0031266:3_826;Name=CG2807-cds;Parent=FBtr0078068;parent_type=mRNA" - - - - -	110	569,725 – 569,830	+	14	106	72.26	-1.04	0.45	0.702317
74	dm3.chr2L	570,866 – 570,986	- - CDS="CDS;ID=CDS_FBgn0031266:3_826;Name=CG2807-cds;Parent=FBtr0078068;parent_type=mRNA" - - - - -	111	570,866 – 570,986	+	15	120	81.32	-2.14	0.43	0.650999
75	dm3.chr2L	592,983 – 593,038	- - - intron="intron;ID=intron_FBgn0010323:4_FBgn0010323:2;Name=Gsc-in;Parent=FBtr0078072;parent_type=mRNA" - - - -	112	592,983 – 593,038	-	9	64	65.71	-0.79	0.46	0.602829
76	dm3.chr2L	593,618 – 593,732	- - CDS="CDS;ID=CDS_FBgn0010323:4_705;Name=Gsc-cds;Parent=FBtr0078072;parent_type=mRNA" - - - - -	113	593,618 – 593,732	-	13	120	81.80	-1.49	0.65	0.769860
77	dm3.chr2L	595,406 – 595,509	- - - - - - - -	114	595,406 – 595,498	-	12	120	83.35	-1.73	0.73	0.837760
77	dm3.chr2L	595,406 – 595,509	- - - - - - - -	115	595,406 – 595,509	-	12	120	86.13	-2.09	0.65	0.758953
78	dm3.chr2L	597,251 – 597,365	- - - - - - - -	116	597,251 – 597,342	-	7	112	76.53	-3.04	0.40	0.963710
78	dm3.chr2L	597,251 – 597,365	- - - - - - - -	117	597,275 – 597,365	-	6	93	81.03	-1.95	0.83	0.978022
79	dm3.chr2L	605,470 – 605,559	- - - - - - - -	118	605,470 – 605,559	-	6	91	76.40	-1.68	0.55	0.804105
80	dm3.chr2L	606,480 – 606,583	- - - - - - - -	119	606,480 – 606,583	+	10	107	81.78	-1.51	0.60	0.512852
81	dm3.chr2L	611,159 – 611,280	- - - - - - - -	120	611,159 – 611,280	+	6	122	71.01	-1.31	0.47	0.703869
82	dm3.chr2L	611,306 – 611,392	- - - - - - - -	121	611,306 – 611,392	+	9	89	70.19	-1.84	0.36	0.872291
83	dm3.chr2L	613,505 – 613,599	- - - - - - - -	122	613,505 – 613,599	+	5	94	88.21	-2.74	0.74	0.967495
84	dm3.chr2L	615,548 – 615,621	- - - - - - - -	123	615,548 – 615,621	-	8	73	77.06	-1.32	0.56	0.628190
85	dm3.chr2L	624,120 – 624,212	- - - - - - - -	124	624,120 – 624,212	+	9	102	76.95	-1.99	0.39	0.526272
86	dm3.chr2L	624,369 – 624,473	- - - - - - - -	125	624,369 – 624,473	-	5	104	89.42	-2.65	0.73	0.945026
87	dm3.chr2L	630,016 – 630,160	- - - - - - - -	126	630,016 – 630,123	+	6	111	83.08	-1.42	0.78	0.758560
				127	630,045 – 630,160	+	6	115	86.03	-2.56	0.73	0.974208
				128	630,045 – 630,160	-	6	115	86.03	-1.74	0.75	0.763976
88	dm3.chr2L	631,340 – 631,400	- - - - - - - -	129	631,340 – 631,400	+	10	62	74.20	-0.28	0.82	0.692737
88	dm3.chr2L	631,340 – 631,400	- - - - - - - -	130	631,340 – 631,400	-	10	62	74.20	-0.61	0.79	0.854142
89	dm3.chr2L	632,152 – 632,257	- - - - - - - -	131	632,152 – 632,253	+	7	120	68.93	-2.02	0.33	0.570084
89	dm3.chr2L	632,152 – 632,257	- - - - - - - -	132	632,153 – 632,257	+	7	120	67.38	-1.60	0.43	0.810357
90	dm3.chr2L	650,423 – 650,524	- - - intron="intron;ID=intron_CG17941:6_CG17941:7;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	133	650,423 – 650,524	-	11	120	90.46	-2.88	0.83	0.989556
91	dm3.chr2L	653,970 – 654,075	- - - intron="intron;ID=intron_CG17941:5_CG17941:6;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	134	653,970 – 654,075	+	3	125	74.86	-3.07	0.53	0.983899
92	dm3.chr2L	656,207 – 656,323	- - - intron="intron;ID=intron_CG17941:3_CG17941:4;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	135	656,207 – 656,323	+	6	116	85.79	-1.35	0.84	0.693136
93	dm3.chr2L	658,537 – 658,639	- - - intron="intron;ID=intron_CG17941:2_CG17941:3;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	136	658,537 – 658,639	+	6	103	77.19	-1.58	0.73	0.949445
93	dm3.chr2L	658,537 – 658,639		137	658,537 – 658,639	-	6	103	77.19	-2.30	0.74	0.994421
94	dm3.chr2L	660,764 – 660,822	- - - intron="intron;ID=intron_CG17941:2_CG17941:3;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	138	660,764 – 660,822	-	3	61	88.89	-3.04	0.94	0.996639
95	dm3.chr2L	672,772 – 672,826	- - - intron="intron;ID=intron_CG17941:2_CG17941:3;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	139	672,772 – 672,826	+	5	56	75.05	-1.50	0.79	0.960341
95	dm3.chr2L	672,772 – 672,826		140	672,772 – 672,826	-	5	56	75.05	-1.10	0.67	0.671497
96	dm3.chr2L	673,608 – 673,666	- - - intron="intron;ID=intron_CG17941:2_CG17941:3;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	141	673,608 – 673,666	+	4	58	97.13	-1.52	0.96	0.825292
96	dm3.chr2L	673,608 – 673,666		142	673,608 – 673,666	-	4	58	97.13	-2.46	0.97	0.985712
97	dm3.chr2L	674,882 – 674,990	- - - intron="intron;ID=intron_CG17941:2_CG17941:3;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	143	674,882 – 674,990	-	5	108	95.92	-1.52	0.91	0.656787
98	dm3.chr2L	675,318 – 675,418	- - - intron="intron;ID=intron_CG17941:2_CG17941:3;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	144	675,318 – 675,418	-	5	100	96.60	-1.93	0.98	0.961693
99	dm3.chr2L	685,851 – 685,958	- - - intron="intron;ID=intron_CG17941:2_CG17941:3;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	145	685,851 – 685,958	-	5	116	86.32	-1.42	0.91	0.863171
100	dm3.chr2L	713,830 – 713,886	- - - intron="intron;ID=intron_CG17941:1_CG17941:2;Name=ds-in;Parent=FBtr0078045;parent_type=mRNA" - - - -	146	713,830 – 713,886	+	7	59	84.28	-1.49	0.75	0.692850
101	dm3.chr2L	723,731 – 723,847	- - - - - - - -	147	723,731 – 723,847	-	5	116	82.99	-1.55	0.75	0.711774
102	dm3.chr2L	734,357 – 734,439	- - - - - - - -	148	734,357 – 734,439	+	5	83	67.68	-1.87	0.36	0.767794
102	dm3.chr2L	734,357 – 734,439	- - - - - - - -	149	734,357 – 734,439	-	5	83	67.68	-1.69	0.53	0.975206
103	dm3.chr2L	744,073 – 744,182	- - - - - - - -	150	744,073 – 744,182	+	5	118	70.46	-1.25	0.52	0.633221
104	dm3.chr2L	746,687 – 746,801	- - - - - - - -	151	746,687 – 746,801	+	8	116	81.15	-2.31	0.48	0.810927
105	dm3.chr2L	755,607 – 755,714	- - - intron="intron;ID=intron_FBgn0031275:3_FBgn0031275:4;Name=GABA-B-R3-in;Parent=FBtr0078001,FBtr0301439;parent_type=mRNA" - - - -	152	755,607 – 755,714	-	6	120	65.14	-0.80	0.55	0.829887
106	dm3.chr2L	763,854 – 763,921	- - - - - - - -	153	763,854 – 763,921	-	11	76	86.78	-1.92	0.76	0.874157
107	dm3.chr2L	769,795 – 769,866	- - - - - - - -	154	769,795 – 769,866	-	4	71	92.02	-1.24	0.98	0.851376
108	dm3.chr2L	774,386 – 774,498	- - - - - - - -	155	774,386 – 774,498	+	5	118	84.05	-1.82	0.75	0.825383
109	dm3.chr2L	775,441 – 775,557	- - - - - - - -	156	775,441 – 775,557	+	5	119	88.10	-2.45	0.84	0.975751
110	dm3.chr2L	778,551 – 778,663	- - - - - - - -	157	778,551 – 778,663	-	5	129	67.32	-1.68	0.38	0.599151
111	dm3.chr2L	780,059 – 780,127	- - - - - - - -	158	780,059 – 780,127	+	5	68	73.09	-1.03	0.63	0.695251
111	dm3.chr2L	780,059 – 780,127	- - - - - - - -	159	780,059 – 780,127	-	5	68	73.09	-1.14	0.76	0.923779
112	dm3.chr2L	782,097 – 782,210	- - CDS="CDS;ID=CDS_FBgn0041250:2_835;Name=Gr21a-cds;Parent=FBtr0078006;parent_type=mRNA" - - - - -	160	782,097 – 782,210	+	5	114	92.63	-1.79	0.91	0.891164
113	dm3.chr2L	790,237 – 790,359	- - - intron="intron;ID=intron_CG3324:1_CG3324:2;Name=Pkg21D-in;Parent=FBtr0078042;parent_type=mRNA" - - - -	161	790,237 – 790,328	-	8	101	69.06	-1.27	0.49	0.810197
113	dm3.chr2L	790,237 – 790,359		162	790,255 – 790,359	-	7	118	74.65	-1.31	0.73	0.917607
114	dm3.chr2L	797,274 – 797,372	- - - - - - - -	163	797,274 – 797,372	+	10	102	78.26	-1.28	0.58	0.680347
115	dm3.chr2L	799,086 – 799,187	- - - - - - - -	164	799,086 – 799,187	+	3	101	92.41	-2.20	0.84	0.870524
116	dm3.chr2L	799,880 – 800,023	- - - - - - - -	165	799,880 – 799,983	+	4	114	80.80	-1.79	0.72	0.785216
				166	799,880 – 799,983	-	4	114	80.80	-2.06	0.72	0.904471
				167	799,909 – 800,023	+	4	114	82.60	-1.51	0.77	0.677869
				168	799,909 – 800,023	-	4	114	82.60	-2.12	0.82	0.965697
117	dm3.chr2L	800,291 – 800,464	- - - - - - - -	169	800,291 – 800,464	+	4	176	75.14	-2.75	0.39	0.872952
118	dm3.chr2L	804,787 – 804,904	- - - - - - - -	170	804,787 – 804,904	+	5	120	89.24	-2.62	0.60	0.701617
119	dm3.chr2L	814,638 – 814,786	- - CDS="CDS;ID=CDS_FBgn0031281:3_835;Name=Saf6-cds;Parent=FBtr0078041;parent_type=mRNA" - - - - -	171	814,638 – 814,746	-	12	119	70.66	-1.35	0.47	0.856826
119	dm3.chr2L	814,638 – 814,786		172	814,666 – 814,786	-	12	120	77.07	-1.05	0.55	0.500000
120	dm3.chr2L	818,165 – 818,283	- - - - - - - -	173	818,165 – 818,283	+	7	118	65.24	-0.71	0.48	0.549168
121	dm3.chr2L	819,689 – 819,753	- - - - - - - -	174	819,689 – 819,753	-	6	64	69.27	-1.43	0.51	0.940717
122	dm3.chr2L	831,091 – 831,224	- - - intron="intron;ID=intron_CG3727:4_CG3727:5;Name=dock-in;Parent=FBtr0078013,FBtr0078014,FBtr0078015;parent_type=mRNA" - - - -	175	831,091 – 831,184	-	3	95	92.96	-2.87	0.65	0.735209
122	dm3.chr2L	831,091 – 831,224		176	831,113 – 831,224	+	10	116	60.88	-0.58	0.43	0.568234
123	dm3.chr2L	841,207 – 841,299	- - - intron="intron;ID=intron_FBgn0020304:8_FBgn0020304:7;Name=drongo-in;Parent=FBtr0078037,FBtr0302121;parent_type=mRNA" - - - -	177	841,207 – 841,299	+	3	110	80.73	-2.33	0.72	0.936409
124	dm3.chr2L	842,067 – 842,159	- - - intron="intron;ID=intron_FBgn0020304:8_FBgn0020304:7;Name=drongo-in;Parent=FBtr0078037,FBtr0302121;parent_type=mRNA" - - - -	178	842,067 – 842,159	+	5	108	73.86	-1.48	0.57	0.658006
124	dm3.chr2L	842,067 – 842,159		179	842,067 – 842,159	-	5	108	73.86	-1.47	0.66	0.860637
125	dm3.chr2L	842,692 – 842,793	- - - - - - - -	180	842,692 – 842,793	+	5	108	67.01	-0.68	0.59	0.545961
126	dm3.chr2L	844,341 – 844,442	- - - - - - - -	181	844,341 – 844,442	+	5	101	80.40	-1.65	0.67	0.702904
126	dm3.chr2L	844,341 – 844,442	- - - - - - - -	182	844,341 – 844,442	-	5	101	80.40	-1.69	0.66	0.706431
127	dm3.chr2L	845,827 – 845,916	- - - - - - - -	183	845,827 – 845,916	-	8	92	67.84	-0.78	0.47	0.545255
128	dm3.chr2L	857,550 – 857,651	FBnoncoding="pre_miRNA;ID=FBtr0304182;Name=mir-375-RM;Parent=FBgn0262177;Alias=CR42884-RM;Dbxref=FlyBase_Annotation_IDs:CR42884-RM,miRBase:MI0005813" - - - - - - "mirBase_v16=dsi-mir-375\|4.2e-50"	184	857,550 – 857,651	+	13	119	77.38	-2.01	0.73	0.992252
129	dm3.chr2L	876,655 – 876,790	- - - - - - - -	185	876,655 – 876,790	+	12	164	79.73	-2.44	0.56	0.959578
129	dm3.chr2L	876,655 – 876,790	- - - - - - - -	186	876,655 – 876,790	-	12	164	79.73	-2.01	0.58	0.872822
130	dm3.chr2L	886,362 – 886,454	- - - - - - - -	187	886,362 – 886,454	+	6	102	72.36	-1.65	0.48	0.626283
131	dm3.chr2L	889,491 – 889,592	- - - - - - - -	188	889,491 – 889,592	+	12	118	77.28	-1.55	0.74	0.958487
132	dm3.chr2L	892,658 – 892,755	- - - - - - - -	189	892,658 – 892,755	+	7	106	60.35	-2.04	0.30	0.894230
133	dm3.chr2L	901,461 – 901,549	- - - - "Rfam_10.0=RF00003;U1;AY187768.1/1130-1294\|2.2e-26" "Noncode_2.0=n5572_u344_X53544_snRNA_Drosophila\|2.2e-26" "unique_Noncode_2.0=u3858_snRNA_Drosophila\|1.9e-26" -	190	901,461 – 901,549	+	10	92	82.78	-1.62	0.87	0.967660
134	dm3.chr2L	902,180 – 902,276	- - - - - - - -	191	902,180 – 902,276	-	6	96	92.01	-2.06	0.86	0.913419
135	dm3.chr2L	906,015 – 906,107	- - - - - - - -	192	906,015 – 906,107	+	9	93	76.25	-1.96	0.55	0.968045
135	dm3.chr2L	906,015 – 906,107	- - - - - - - -	193	906,015 – 906,107	-	9	93	76.25	-3.26	0.55	0.999307
136	dm3.chr2L	907,553 – 907,651	- - - - - - - -	194	907,553 – 907,651	+	6	104	69.74	-1.38	0.56	0.940601
137	dm3.chr2L	918,354 – 918,414	- - - - - - - -	195	918,354 – 918,414	-	4	60	96.39	-1.46	0.98	0.871663
138	dm3.chr2L	919,841 – 919,904	- - - - - - - -	196	919,841 – 919,904	+	6	63	72.35	-0.94	0.61	0.749206
138	dm3.chr2L	919,841 – 919,904	- - - - - - - -	197	919,841 – 919,904	-	6	63	72.35	-1.33	0.54	0.831325
139	dm3.chr2L	947,004 – 947,104	- - - intron="intron;ID=intron_FBgn0028481:2_FBgn0028481:3;Name=CG4341-in;Parent=FBtr0077949;parent_type=mRNA" - - - -	198	947,004 – 947,104	-	11	109	76.68	-1.54	0.68	0.971450
140	dm3.chr2L	962,114 – 962,221	- - - - - - - -	199	962,114 – 962,221	-	6	107	67.70	-1.73	0.45	0.960461
141	dm3.chr2L	968,555 – 968,655	- - - - - - - -	200	968,555 – 968,655	+	6	100	79.24	-1.49	0.67	0.820479
141	dm3.chr2L	968,555 – 968,655	- - - - - - - -	201	968,555 – 968,655	-	6	100	79.24	-1.60	0.64	0.826377
142	dm3.chr2L	987,511 – 987,566	- - - - - - - -	202	987,511 – 987,566	+	5	65	66.27	-1.02	0.58	0.827428
143	dm3.chr2L	987,661 – 987,721	- - - - - - - -	203	987,661 – 987,721	-	6	60	68.68	-0.96	0.49	0.633363
144	dm3.chr2L	987,795 – 987,898	- - - - - - - -	204	987,795 – 987,898	-	5	120	60.02	-0.89	0.41	0.522320
145	dm3.chr2L	993,246 – 993,340	- - - - - - - -	205	993,246 – 993,340	-	4	99	75.13	-1.66	0.59	0.702069
146	dm3.chr2L	994,491 – 994,619	- - - - - - - -	206	994,491 – 994,619	-	4	131	64.98	-1.26	0.48	0.715207
147	dm3.chr2L	995,916 – 996,037	- - - - - - - -	207	995,916 – 996,037	+	3	138	79.02	-1.47	0.72	0.500000
148	dm3.chr2L	1,024,563 – 1,024,701	- - - intron="intron;ID=intron_FBgn0031294:10_FBgn0031294:9;Name=IA-2-in;Parent=FBtr0301416,FBtr0301417;parent_type=mRNA" - - - -	208	1,024,563 – 1,024,676	+	6	117	71.71	-1.00	0.66	0.818358
148	dm3.chr2L	1,024,563 – 1,024,701		209	1,024,599 – 1,024,701	+	6	115	75.14	-1.28	0.63	0.666464
149	dm3.chr2L	1,036,946 – 1,037,105	- - - intron="intron;ID=intron_FBgn0031294:11_FBgn0031294:10;Name=IA-2-in;Parent=FBtr0301416;parent_type=mRNA" - - - -	210	1,036,946 – 1,037,105	-	5	168	65.25	-1.41	0.37	0.523259
150	dm3.chr2L	1,044,331 – 1,044,437	- - - - - - - -	211	1,044,331 – 1,044,437	-	10	118	76.87	-1.70	0.46	0.628951
151	dm3.chr2L	1,046,062 – 1,046,251	- - - - - - - -	212	1,046,062 – 1,046,155	+	3	93	95.70	-2.26	0.83	0.794678
				213	1,046,062 – 1,046,155	-	3	93	95.70	-1.53	0.99	0.913296
				214	1,046,155 – 1,046,250	+	5	113	75.05	-1.35	0.68	0.727765
				215	1,046,156 – 1,046,251	+	5	113	74.39	-1.57	0.66	0.847341
152	dm3.chr2L	1,047,047 – 1,047,105	- - - intron="intron;ID=intron_FBgn0031294:13_FBgn0031294:12;Name=IA-2-in;Parent=FBtr0301417;parent_type=mRNA" - - - -	216	1,047,047 – 1,047,105	+	5	62	89.26	-2.62	0.80	0.967634
153	dm3.chr2L	1,065,800 – 1,065,890	- - - intron="intron;ID=intron_CG4385:1_CG4385:2;Name=S-in;Parent=FBtr0077993;parent_type=mRNA" - - - -	217	1,065,800 – 1,065,890	-	4	90	88.15	-2.38	0.71	0.853715
154	dm3.chr2L	1,065,897 – 1,065,990	- - - intron="intron;ID=intron_CG4385:1_CG4385:2;Name=S-in;Parent=FBtr0077993;parent_type=mRNA" - - - -	218	1,065,897 – 1,065,990	-	5	95	75.27	-1.63	0.55	0.795971
155	dm3.chr2L	1,073,335 – 1,073,437	- - - intron="intron;ID=intron_CG4385:1_CG4385:2;Name=S-in;Parent=FBtr0077993;parent_type=mRNA" - - - -	219	1,073,335 – 1,073,437	-	6	105	79.18	-3.15	0.41	0.967428
156	dm3.chr2L	1,090,798 – 1,090,897	- - - intron="intron;ID=intron_FBgn0031299:10_FBgn0031299:9;Name=CG4629-in;Parent=FBtr0077992;parent_type=mRNA" - - - -	220	1,090,798 – 1,090,897	+	10	109	69.16	-0.98	0.45	0.536375
157	dm3.chr2L	1,100,845 – 1,100,981	- - - intron="intron;ID=intron_FBgn0031299:10_FBgn0031299:9;Name=CG4629-in;Parent=FBtr0077992;parent_type=mRNA" - - - -	221	1,100,845 – 1,100,941	+	8	117	75.82	-1.69	0.49	0.555304
157	dm3.chr2L	1,100,845 – 1,100,981		222	1,100,870 – 1,100,981	-	8	117	86.88	-2.17	0.62	0.643502
158	dm3.chr2L	1,101,371 – 1,101,465	- - - intron="intron;ID=intron_FBgn0031299:10_FBgn0031299:9;Name=CG4629-in;Parent=FBtr0077992;parent_type=mRNA" - - - -	223	1,101,371 – 1,101,465	+	6	103	65.14	-0.95	0.45	0.704592
159	dm3.chr2L	1,118,887 – 1,118,957	- - - - - - - -	224	1,118,887 – 1,118,957	-	6	70	77.41	-1.54	0.56	0.688801
160	dm3.chr2L	1,138,858 – 1,138,960	- - CDS="CDS;ID=CDS_CG4577:2_723;Name=CG4577-cds;Parent=FBtr0077957;parent_type=mRNA" - - - - -	225	1,138,858 – 1,138,960	+	12	108	78.38	-1.56	0.53	0.734811
161	dm3.chr2L	1,152,792 – 1,152,906	- - CDS="CDS;ID=CDS_CG33979:3_705;Name=capt-cds;Parent=FBtr0100023;parent_type=mRNA" - - - - -	226	1,152,792 – 1,152,906	+	13	120	74.42	-1.29	0.44	0.599795
162	dm3.chr2L	1,154,456 – 1,154,561	- - - intron="intron;ID=intron_CG33979:7_CG33979:8;Name=capt-in;Parent=FBtr0100023;parent_type=mRNA" - - - -	227	1,154,456 – 1,154,561	+	6	115	67.94	-2.48	0.38	0.983797
162	dm3.chr2L	1,154,456 – 1,154,561		228	1,154,456 – 1,154,561	-	6	115	67.94	-3.25	0.57	0.999828
163	dm3.chr2L	1,192,397 – 1,192,517	- - CDS="CDS;ID=CDS_CG5001:5_750;Name=CG5001-cds;Parent=FBtr0077972;parent_type=mRNA" - - - - -	229	1,192,397 – 1,192,517	-	15	120	78.58	-2.94	0.30	0.906065
164	dm3.chr2L	1,193,376 – 1,193,467	- - - intron="intron;ID=intron_CG5001:5_CG5001:6;Name=CG5001-in;Parent=FBtr0077972;parent_type=mRNA" - - - -	230	1,193,376 – 1,193,467	-	12	124	60.26	-1.30	0.38	0.866645
165	dm3.chr2L	1,204,207 – 1,204,300	- - - - - - - -	231	1,204,207 – 1,204,300	-	7	98	65.05	-0.70	0.48	0.539949
166	dm3.chr2L	1,205,033 – 1,205,123	- - - - - - - -	232	1,205,033 – 1,205,123	+	6	100	72.37	-3.00	0.56	0.998499
167	dm3.chr2L	1,206,610 – 1,206,718	- - - - - - - -	233	1,206,610 – 1,206,718	+	10	117	64.44	-2.35	0.32	0.987646
168	dm3.chr2L	1,218,148 – 1,218,267	- - - - - - - -	234	1,218,148 – 1,218,267	+	5	120	93.55	-2.01	0.86	0.850887
169	dm3.chr2L	1,218,448 – 1,218,667	- - - - - - - -	235	1,218,448 – 1,218,552	-	5	120	85.08	-1.68	0.78	0.756525
169	dm3.chr2L	1,218,448 – 1,218,667	- - - - - - - -	236	1,218,552 – 1,218,667	+	5	120	85.13	-2.28	0.65	0.802743
170	dm3.chr2L	1,230,489 – 1,230,589	- - - - - - - -	237	1,230,489 – 1,230,589	-	8	107	72.99	-1.34	0.46	0.630121
171	dm3.chr2L	1,237,689 – 1,237,855	- - - - - - - -	238	1,237,689 – 1,237,792	-	8	109	90.94	-3.38	0.89	0.997435
				239	1,237,721 – 1,237,818	-	8	97	88.35	-2.63	0.75	0.973059
				240	1,237,755 – 1,237,855	+	7	100	73.83	-1.10	0.55	0.732669
				241	1,237,755 – 1,237,855	-	7	100	73.83	-1.65	0.63	0.981923
172	dm3.chr2L	1,242,856 – 1,242,946	- - - - - - - -	242	1,242,856 – 1,242,946	+	7	118	69.13	-1.00	0.57	0.669212
173	dm3.chr2L	1,245,236 – 1,245,327	- - - - - - - -	243	1,245,236 – 1,245,327	+	7	114	56.53	-1.00	0.35	0.537977
174	dm3.chr2L	1,250,003 – 1,250,110	- - - - - - - -	244	1,250,003 – 1,250,110	+	9	120	79.53	-1.94	0.74	0.975224
174	dm3.chr2L	1,250,003 – 1,250,110	- - - - - - - -	245	1,250,003 – 1,250,110	-	9	120	79.53	-2.26	0.81	0.993225
175	dm3.chr2L	1,257,424 – 1,257,475	- - - intron="intron;ID=intron_FBgn0041097:1_FBgn0041097:2;Name=robo3-in;Parent=FBtr0077921;parent_type=mRNA" - - - -	246	1,257,424 – 1,257,475	+	3	51	94.77	-1.92	0.89	0.826816
175	dm3.chr2L	1,257,424 – 1,257,475		247	1,257,424 – 1,257,475	-	3	51	94.77	-1.57	0.97	0.894426
176	dm3.chr2L	1,262,236 – 1,262,326	- - - intron="intron;ID=intron_FBgn0041097:1_FBgn0041097:2;Name=robo3-in;Parent=FBtr0077921;parent_type=mRNA" - - - -	248	1,262,236 – 1,262,326	+	6	107	77.91	-1.46	0.69	0.770794
176	dm3.chr2L	1,262,236 – 1,262,326		249	1,262,236 – 1,262,326	-	6	107	77.91	-1.40	0.67	0.676487
177	dm3.chr2L	1,265,251 – 1,265,356	- - - intron="intron;ID=intron_FBgn0041097:1_FBgn0041097:2;Name=robo3-in;Parent=FBtr0077921;parent_type=mRNA" - - - -	250	1,265,251 – 1,265,356	+	8	119	69.06	-1.15	0.40	0.554280
178	dm3.chr2L	1,270,776 – 1,270,875	- - - intron="intron;ID=intron_FBgn0041097:1_FBgn0041097:2;Name=robo3-in;Parent=FBtr0077921;parent_type=mRNA" - - - -	251	1,270,776 – 1,270,875	+	12	125	83.39	-2.30	0.55	0.800034
179	dm3.chr2L	1,275,066 – 1,275,167	- - - intron="intron;ID=intron_FBgn0041097:2_FBgn0041097:3;Name=robo3-in;Parent=FBtr0077921;parent_type=mRNA" - - - -	252	1,275,066 – 1,275,167	-	8	104	69.73	-0.97	0.49	0.593697
180	dm3.chr2L	1,275,910 – 1,276,003	- - - intron="intron;ID=intron_FBgn0041097:2_FBgn0041097:3;Name=robo3-in;Parent=FBtr0077921;parent_type=mRNA" - - - -	253	1,275,910 – 1,276,003	+	7	96	60.83	-1.52	0.31	0.847140
181	dm3.chr2L	1,277,773 – 1,277,870	- - - intron="intron;ID=intron_FBgn0041097:2_FBgn0041097:3;Name=robo3-in;Parent=FBtr0077921;parent_type=mRNA" - - - -	254	1,277,773 – 1,277,866	-	6	103	63.06	-1.54	0.34	0.519543
181	dm3.chr2L	1,277,773 – 1,277,870		255	1,277,779 – 1,277,870	-	4	93	78.64	-2.57	0.46	0.769906
182	dm3.chr2L	1,286,362 – 1,286,480	- - CDS="CDS;ID=CDS_FBgn0041097:7_857;Name=robo3-cds;Parent=FBtr0077921;parent_type=mRNA" - - - - -	256	1,286,362 – 1,286,480	-	14	118	69.16	-1.19	0.38	0.744803
183	dm3.chr2L	1,293,150 – 1,293,268	- - CDS="CDS;ID=CDS_FBgn0041097:12_857;Name=robo3-cds;Parent=FBtr0077921;parent_type=mRNA" - - - - -	257	1,293,150 – 1,293,268	+	11	118	75.39	-2.17	0.39	0.922046
184	dm3.chr2L	1,296,787 – 1,296,879	- - - - - - - -	258	1,296,787 – 1,296,879	-	3	92	75.00	-1.15	0.78	0.532482
185	dm3.chr2L	1,304,776 – 1,304,882	- - - - - - - -	259	1,304,776 – 1,304,882	+	6	107	87.81	-2.20	0.66	0.718091
185	dm3.chr2L	1,304,776 – 1,304,882	- - - - - - - -	260	1,304,776 – 1,304,882	-	6	107	87.81	-2.69	0.73	0.969934
186	dm3.chr2L	1,306,099 – 1,306,191	- - - - - - - -	261	1,306,099 – 1,306,191	+	10	109	76.79	-2.06	0.41	0.617903
187	dm3.chr2L	1,307,051 – 1,307,155	- - - - - - - -	262	1,307,051 – 1,307,155	-	12	120	90.97	-2.51	0.71	0.879508
188	dm3.chr2L	1,307,868 – 1,307,958	- - - - - - - -	263	1,307,868 – 1,307,958	+	8	101	71.84	-1.58	0.38	0.515958
189	dm3.chr2L	1,310,146 – 1,310,287	- - - - - - - -	264	1,310,146 – 1,310,287	-	7	160	66.29	-1.70	0.36	0.836485
190	dm3.chr2L	1,324,319 – 1,324,436	- - - - - - - -	265	1,324,319 – 1,324,436	-	3	120	93.26	-1.32	0.93	0.655135
191	dm3.chr2L	1,342,960 – 1,343,046	- - - - - - - -	266	1,342,960 – 1,343,046	+	7	99	64.36	-0.78	0.45	0.620894
191	dm3.chr2L	1,342,960 – 1,343,046	- - - - - - - -	267	1,342,960 – 1,343,046	-	7	99	64.36	-0.81	0.49	0.802355
192	dm3.chr2L	1,353,120 – 1,353,181	- - CDS="CDS;ID=CDS_FBgn0031333:1_754;Name=CG5561-cds;Parent=FBtr0077947;parent_type=mRNA" - - - - -	268	1,353,120 – 1,353,181	+	5	63	61.71	-2.45	0.58	0.999405
193	dm3.chr2L	1,366,974 – 1,367,096	- - - - - - - -	269	1,366,974 – 1,367,078	+	6	113	80.92	-1.39	0.85	0.907281
193	dm3.chr2L	1,366,974 – 1,367,096	- - - - - - - -	270	1,367,005 – 1,367,096	+	7	105	76.92	-1.50	0.81	0.963650
194	dm3.chr2L	1,373,332 – 1,373,424	- - - - - - - -	271	1,373,332 – 1,373,424	-	6	104	90.65	-2.37	0.68	0.666175
195	dm3.chr2L	1,375,371 – 1,375,467	- - - - - - - -	272	1,375,371 – 1,375,467	-	5	113	58.81	-1.61	0.29	0.517203
196	dm3.chr2L	1,376,447 – 1,376,539	- - - - - - - -	273	1,376,447 – 1,376,539	-	7	96	69.83	-0.85	0.51	0.531019
197	dm3.chr2L	1,395,202 – 1,395,289	- - - intron="intron;ID=intron_FBgn0002543:12_FBgn0002543:11;Name=lea-in;Parent=FBtr0077941;parent_type=mRNA" - - - -	274	1,395,202 – 1,395,289	-	9	95	76.42	-2.10	0.65	0.990679
198	dm3.chr2L	1,399,540 – 1,399,734	- - - intron="intron;ID=intron_FBgn0002543:14_FBgn0002543:13;Name=lea-in;Parent=FBtr0077941;parent_type=mRNA" - - - -	275	1,399,540 – 1,399,631	-	8	99	67.20	-0.68	0.48	0.500000
198	dm3.chr2L	1,399,540 – 1,399,734		276	1,399,631 – 1,399,734	-	3	104	83.50	-2.37	0.74	0.929473
199	dm3.chr2L	1,405,819 – 1,405,941	- - - intron="intron;ID=intron_FBgn0002543:14_FBgn0002543:13;Name=lea-in;Parent=FBtr0077941;parent_type=mRNA" - - - -	277	1,405,819 – 1,405,931	-	6	114	53.08	-0.96	0.37	0.810633
				278	1,405,829 – 1,405,941	+	6	114	55.61	-1.67	0.28	0.815591
				279	1,405,829 – 1,405,941	-	6	114	55.61	-1.66	0.46	0.995545
200	dm3.chr2L	1,421,112 – 1,421,205	- - - - - - - -	280	1,421,112 – 1,421,205	+	12	112	60.74	-1.94	0.26	0.887276
201	dm3.chr2L	1,422,829 – 1,422,899	- - - - - - - -	281	1,422,829 – 1,422,899	+	7	70	65.67	-0.80	0.55	0.865295
202	dm3.chr2L	1,432,594 – 1,432,705	- - - - - - - -	282	1,432,594 – 1,432,705	-	9	120	77.69	-1.78	0.43	0.508995
203	dm3.chr2L	1,440,591 – 1,440,684	- - - - - - - -	283	1,440,591 – 1,440,684	+	7	117	66.45	-2.30	0.27	0.787042
204	dm3.chr2L	1,445,513 – 1,445,638	- - - - - - - -	284	1,445,513 – 1,445,618	-	8	117	57.97	-1.93	0.22	0.691541
204	dm3.chr2L	1,445,513 – 1,445,638	- - - - - - - -	285	1,445,531 – 1,445,638	-	9	114	58.49	-1.55	0.37	0.977585
205	dm3.chr2L	1,489,716 – 1,489,814	- - - - - - - -	286	1,489,716 – 1,489,814	-	9	110	78.81	-1.67	0.56	0.689555
206	dm3.chr2L	1,490,348 – 1,490,439	- - - - - - - -	287	1,490,348 – 1,490,439	-	10	102	73.03	-0.85	0.58	0.573973
207	dm3.chr2L	1,491,908 – 1,492,055	- - - - - - - -	288	1,491,908 – 1,492,055	+	5	149	83.60	-2.09	0.56	0.518665
208	dm3.chr2L	1,517,611 – 1,517,703	- - - - - - - -	289	1,517,611 – 1,517,703	-	7	95	66.06	0.08	0.72	0.590304
209	dm3.chr2L	1,543,143 – 1,543,198	- - - - - - - -	290	1,543,143 – 1,543,198	-	7	56	74.68	-1.19	0.54	0.690274
210	dm3.chr2L	1,547,820 – 1,547,915	- - - - - - - -	291	1,547,820 – 1,547,915	+	7	99	80.29	-2.50	0.63	0.987643
211	dm3.chr2L	1,586,411 – 1,586,538	- - CDS="CDS;ID=CDS_FBgn0031347:1_773;Name=CG10869-cds;Parent=FBtr0077917;parent_type=mRNA" intron="intron;ID=intron_CG14351:2_CG14351:3;Name=haf-in;Parent=FBtr0077875;parent_type=mRNA" - - - -	292	1,586,411 – 1,586,505	+	7	106	63.55	-1.50	0.44	0.963945
211	dm3.chr2L	1,586,411 – 1,586,538		293	1,586,442 – 1,586,538	-	7	105	63.41	-2.30	0.22	0.790220
212	dm3.chr2L	1,598,065 – 1,598,155	- - - intron="intron;ID=intron_CG31935:2_CG31935:3;Name=CG31935-in;Parent=FBtr0077916;parent_type=mRNA" - - - -	294	1,598,065 – 1,598,155	+	8	107	77.80	-1.67	0.59	0.817738
213	dm3.chr2L	1,603,062 – 1,603,179	- - CDS="CDS;ID=CDS_CG14351:6_705;Name=haf-cds;Parent=FBtr0077875;parent_type=mRNA" - - - - -	295	1,603,062 – 1,603,179	-	9	127	59.78	-1.72	0.25	0.640390
214	dm3.chr2L	1,603,501 – 1,603,621	- - CDS="CDS;ID=CDS_CG14351:6_705;Name=haf-cds;Parent=FBtr0077875;parent_type=mRNA" - - - - -	296	1,603,501 – 1,603,621	+	15	120	82.65	-1.85	0.47	0.521987
215	dm3.chr2L	1,606,519 – 1,606,637	- - - intron="intron;ID=intron_CG14351:10_CG14351:11;Name=haf-in;Parent=FBtr0077875;parent_type=mRNA" - - - -	297	1,606,519 – 1,606,637	+	12	120	76.69	-1.85	0.60	0.984378
216	dm3.chr2L	1,613,664 – 1,613,759	- - - intron="intron;ID=intron_CG7361:1_CG7361:3;Name=RFeSP-in;Parent=FBtr0077915;parent_type=mRNA" - - - -	298	1,613,664 – 1,613,759	+	6	96	61.31	-1.03	0.38	0.727077
217	dm3.chr2L	1,622,535 – 1,622,626	- - - - - - - -	299	1,622,535 – 1,622,626	-	12	115	72.22	-1.67	0.65	0.981614
218	dm3.chr2L	1,637,499 – 1,637,603	- - - - - - - -	300	1,637,499 – 1,637,603	-	7	112	76.13	-1.85	0.46	0.571962
219	dm3.chr2L	1,640,501 – 1,640,603	- - - - - - - -	301	1,640,501 – 1,640,603	+	5	112	82.44	-1.44	0.76	0.594229
220	dm3.chr2L	1,645,705 – 1,645,811	- - - - - - - -	302	1,645,705 – 1,645,811	-	7	111	71.12	-1.31	0.59	0.875544
221	dm3.chr2L	1,651,231 – 1,651,313	- - - - - - - -	303	1,651,231 – 1,651,313	-	5	86	88.09	-2.04	0.79	0.854273
222	dm3.chr2L	1,654,390 – 1,654,482	- - - intron="intron;ID=intron_FBgn0086758:4_FBgn0086758:8;Name=chinmo-in;Parent=FBtr0077877,FBtr0303933,FBtr0303935;parent_type=mRNA" - - - -	304	1,654,390 – 1,654,482	+	8	105	73.79	-0.72	0.65	0.538470
223	dm3.chr2L	1,677,225 – 1,677,298	- - - intron="intron;ID=intron_FBgn0086758:6_FBgn0086758:7;Name=chinmo-in;Parent=FBtr0077878,FBtr0303934;parent_type=mRNA" - - - -	305	1,677,225 – 1,677,298	+	6	76	78.18	-2.36	0.56	0.968609
224	dm3.chr2L	1,687,171 – 1,687,267	- - - intron="intron;ID=intron_FBgn0086758:7_FBgn0086758:8;Name=chinmo-in;Parent=FBtr0077878,FBtr0303934;parent_type=mRNA" - - - -	306	1,687,171 – 1,687,267	-	5	120	77.16	-1.98	0.73	0.953670
225	dm3.chr2L	1,693,873 – 1,693,968	- - - intron="intron;ID=intron_FBgn0086758:8_FBgn0086758:9;Name=chinmo-in;Parent=FBtr0077877,FBtr0077878,FBtr0303933,FBtr0303934,FBtr0303935;parent_type=mRNA" - - - -	307	1,693,873 – 1,693,968	+	8	111	71.47	-1.19	0.53	0.665969
226	dm3.chr2L	1,696,779 – 1,696,870	- - - - - - - -	308	1,696,779 – 1,696,870	+	10	116	75.64	-2.25	0.57	0.980124
226	dm3.chr2L	1,696,779 – 1,696,870	- - - - - - - -	309	1,696,779 – 1,696,870	-	10	116	75.64	-2.06	0.53	0.938136
227	dm3.chr2L	1,703,772 – 1,703,868	- - - - - - - -	310	1,703,772 – 1,703,868	+	9	103	80.46	-1.39	0.64	0.641536
228	dm3.chr2L	1,709,099 – 1,709,205	- - - intron="intron;ID=intron_CG17660:5_CG17660:6;Name=CG17660-in;Parent=FBtr0077912;parent_type=mRNA" - - - -	311	1,709,099 – 1,709,205	+	13	106	57.63	-0.37	0.43	0.750480
229	dm3.chr2L	1,740,597 – 1,740,701	- - - intron="intron;ID=intron_CG17646:13_CG17646:2;Name=CG17646-in;Parent=FBtr0077886;parent_type=mRNA" - - - -	312	1,740,597 – 1,740,701	-	9	116	66.01	-1.56	0.35	0.702995
230	dm3.chr2L	1,752,981 – 1,753,095	- - - - - - - -	313	1,752,981 – 1,753,095	+	6	114	76.75	-1.32	0.65	0.730425
231	dm3.chr2L	1,754,258 – 1,754,362	- - - - - - - -	314	1,754,258 – 1,754,362	-	3	104	59.67	-1.54	0.59	0.961255
232	dm3.chr2L	1,760,993 – 1,761,067	- - - - - - - -	315	1,760,993 – 1,761,067	+	7	80	62.15	-1.93	0.51	0.998603
232	dm3.chr2L	1,760,993 – 1,761,067	- - - - - - - -	316	1,760,993 – 1,761,067	-	7	80	62.15	-0.80	0.40	0.588863
233	dm3.chr2L	1,761,100 – 1,761,228	- - - - - - - -	317	1,761,100 – 1,761,195	-	8	120	85.18	-2.58	0.58	0.829028
233	dm3.chr2L	1,761,100 – 1,761,228	- - - - - - - -	318	1,761,127 – 1,761,228	-	8	113	75.22	-1.56	0.52	0.666477
234	dm3.chr2L	1,764,647 – 1,764,738	- - - - - - - -	319	1,764,647 – 1,764,738	-	5	91	88.50	-2.34	0.73	0.883307
235	dm3.chr2L	1,767,306 – 1,767,406	- - - - - - - -	320	1,767,306 – 1,767,406	-	6	113	87.92	-2.01	0.71	0.656279
236	dm3.chr2L	1,768,157 – 1,768,273	- - - - - - - -	321	1,768,157 – 1,768,273	+	8	120	77.17	-1.86	0.55	0.906409
237	dm3.chr2L	1,768,785 – 1,768,876	- - - - - - - -	322	1,768,785 – 1,768,876	+	5	92	89.28	-2.36	0.87	0.977198
237	dm3.chr2L	1,768,785 – 1,768,876	- - - - - - - -	323	1,768,785 – 1,768,876	-	5	92	89.28	-2.42	0.78	0.941935
238	dm3.chr2L	1,769,415 – 1,769,514	- - - - - - - -	324	1,769,415 – 1,769,514	+	9	117	76.59	-2.89	0.68	0.998407
239	dm3.chr2L	1,774,579 – 1,774,723	- - - - - - - -	325	1,774,579 – 1,774,683	+	7	110	75.77	-1.13	0.64	0.629777
				326	1,774,579 – 1,774,683	-	7	110	75.77	-1.40	0.55	0.574767
				327	1,774,618 – 1,774,723	-	8	115	75.16	-1.40	0.52	0.595018
240	dm3.chr2L	1,780,335 – 1,780,435	- - - - - - - -	328	1,780,335 – 1,780,435	-	6	101	80.52	-2.20	0.55	0.851131
241	dm3.chr2L	1,782,036 – 1,782,133	- - - - - - - -	329	1,782,036 – 1,782,133	+	8	112	70.28	-1.49	0.46	0.828346
242	dm3.chr2L	1,798,832 – 1,798,929	- - - - - - - -	330	1,798,832 – 1,798,929	+	7	116	74.46	-1.72	0.74	0.983071
243	dm3.chr2L	1,800,504 – 1,800,557	- - - - - - - -	331	1,800,504 – 1,800,557	-	5	57	64.65	-1.66	0.46	0.958269
244	dm3.chr2L	1,808,444 – 1,808,554	- - - - - - - -	332	1,808,444 – 1,808,554	+	9	120	66.92	-0.87	0.42	0.551811
245	dm3.chr2L	1,813,631 – 1,813,724	- - - - - - - -	333	1,813,631 – 1,813,724	+	9	116	74.03	-0.90	0.64	0.591094
245	dm3.chr2L	1,813,631 – 1,813,724	- - - - - - - -	334	1,813,631 – 1,813,724	-	9	116	74.03	-2.24	0.83	0.996753
246	dm3.chr2L	1,815,628 – 1,815,722	- - - - - - - -	335	1,815,628 – 1,815,722	+	8	119	66.14	-1.02	0.44	0.574338
247	dm3.chr2L	1,818,918 – 1,819,011	- - - - - - - -	336	1,818,918 – 1,819,011	-	9	113	80.01	-1.32	0.65	0.574169
248	dm3.chr2L	1,819,701 – 1,819,807	- - - - - - - -	337	1,819,701 – 1,819,807	+	7	117	78.81	-1.98	0.58	0.905028
249	dm3.chr2L	1,820,760 – 1,820,854	- - - - - - - -	338	1,820,760 – 1,820,854	-	8	108	85.57	-1.43	0.80	0.681738
250	dm3.chr2L	1,821,449 – 1,821,558	- - CDS="CDS;ID=CDS_FBgn0051933:1_841;Name=CG31933-cds;Parent=FBtr0077896;parent_type=mRNA" - - - - -	339	1,821,449 – 1,821,558	+	6	118	73.51	-1.42	0.57	0.797050
251	dm3.chr2L	1,826,398 – 1,826,488	- - - - - - - -	340	1,826,398 – 1,826,488	+	4	120	67.49	-1.35	0.55	0.733513
251	dm3.chr2L	1,826,398 – 1,826,488	- - - - - - - -	341	1,826,398 – 1,826,488	-	4	120	67.49	-1.19	0.55	0.594218
252	dm3.chr2L	1,827,031 – 1,827,149	- - - - - - - -	342	1,827,031 – 1,827,149	+	6	118	71.70	-1.68	0.55	0.950137
253	dm3.chr2L	1,831,670 – 1,831,778	FBnoncoding="pre_miRNA;ID=FBtr0304391;Name=mir-2280-RM;Parent=FBgn0262275;Alias=CR42982-RM;Dbxref=FlyBase_Annotation_IDs:CR42982-RM,miRBase:MI0011290" - - - - - - "mirBase_v16=dme-mir-2280\|7.1e-49"	343	1,831,670 – 1,831,778	+	6	116	66.34	-1.79	0.38	0.860979
253	dm3.chr2L	1,831,670 – 1,831,778		344	1,831,670 – 1,831,778	-	6	116	66.34	-2.10	0.52	0.995560
254	dm3.chr2L	1,841,941 – 1,842,046	- - - intron="intron;ID=intron_FBgn0051665:2_FBgn0051665:3;Name=CG31665-in;Parent=FBtr0089787,FBtr0089786,FBtr0304911;parent_type=mRNA" - - - -	345	1,841,941 – 1,842,046	+	6	105	90.92	-1.71	0.85	0.781112
255	dm3.chr2L	1,845,823 – 1,845,978	- - - intron="intron;ID=intron_FBgn0051665:3_FBgn0051665:4;Name=CG31665-in;Parent=FBtr0089787,FBtr0089786,FBtr0304911;parent_type=mRNA" - - - -	346	1,845,823 – 1,845,923	+	5	120	58.51	-1.58	0.35	0.814875
				347	1,845,843 – 1,845,953	+	6	110	69.09	-1.32	0.45	0.724269
				348	1,845,843 – 1,845,953	-	6	110	69.09	-1.27	0.46	0.723653
				349	1,845,883 – 1,845,978	-	6	96	70.15	-2.19	0.41	0.960271
256	dm3.chr2L	1,853,535 – 1,853,607	- - CDS="CDS;ID=CDS_FBgn0051665:9_856;Name=CG31665-cds;Parent=FBtr0089786;parent_type=mRNA" - - - - -	350	1,853,535 – 1,853,607	+	15	72	75.33	-1.43	0.43	0.620914
257	dm3.chr2L	1,866,445 – 1,866,551	- - CDS="CDS;ID=CDS_FBgn0051663:7_747;Name=CG31663-cds;Parent=FBtr0077893;parent_type=mRNA" - - - - -	351	1,866,445 – 1,866,551	-	14	119	69.10	-1.00	0.43	0.761684
258	dm3.chr2L	1,884,505 – 1,884,617	- - - - - - - -	352	1,884,505 – 1,884,617	-	6	120	58.25	-1.34	0.29	0.631076
259	dm3.chr2L	1,885,440 – 1,885,539	- - - intron="intron;ID=intron_FBgn0031374:1_FBgn0031374:2;Name=CG7337-in;Parent=FBtr0077811,FBtr0113012;parent_type=mRNA" - - - -	353	1,885,440 – 1,885,539	+	4	99	86.01	-2.59	0.67	0.903355
259	dm3.chr2L	1,885,440 – 1,885,539		354	1,885,440 – 1,885,539	-	4	99	86.01	-1.94	0.77	0.795400
260	dm3.chr2L	1,887,219 – 1,887,317	- - - intron="intron;ID=intron_FBgn0031374:1_FBgn0031374:2;Name=CG7337-in;Parent=FBtr0077811,FBtr0113012;parent_type=mRNA" - - - -	355	1,887,219 – 1,887,317	+	4	120	74.79	-1.22	0.71	0.643131
261	dm3.chr2L	1,898,201 – 1,898,332	- - - intron="intron;ID=intron_FBgn0031374:1_FBgn0031374:2;Name=CG7337-in;Parent=FBtr0077811,FBtr0113012;parent_type=mRNA" - - - -	356	1,898,201 – 1,898,291	+	7	100	75.42	-1.38	0.57	0.786542
				357	1,898,234 – 1,898,330	+	5	97	92.72	-2.21	0.79	0.800589
				358	1,898,234 – 1,898,332	+	6	104	83.38	-1.73	0.74	0.841104
262	dm3.chr2L	1,903,956 – 1,904,075	- - - intron="intron;ID=intron_FBgn0031374:1_FBgn0031374:2;Name=CG7337-in;Parent=FBtr0077811,FBtr0113012;parent_type=mRNA" - - - -	359	1,903,956 – 1,904,075	-	6	120	72.95	-1.50	0.53	0.764609
263	dm3.chr2L	1,909,846 – 1,909,964	- - - - - - - -	360	1,909,846 – 1,909,964	-	8	120	72.84	-1.78	0.39	0.636957
264	dm3.chr2L	1,936,766 – 1,936,856	- - CDS="CDS;ID=CDS_FBgn0031374:12_770;Name=CG7337-cds;Parent=FBtr0113011,FBtr0113012;parent_type=mRNA" - - - - -	361	1,936,766 – 1,936,856	-	10	93	63.39	-1.48	0.30	0.622159
265	dm3.chr2L	1,938,086 – 1,938,165	FBnoncoding="tRNA;ID=FBtr0077872;Name=tRNA:G3:22BCa-RA;Parent=FBgn0011859;Dbxref=FlyBase_Annotation_IDs:CR31667-RA;score_text=Weakly" tRNAscann="Gly_chr2L_trna40" - intron="intron;ID=intron_FBgn0031374:14_FBgn0031374:15;Name=CG7337-in;Parent=FBtr0077811,FBtr0110882,FBtr0110883,FBtr0113011,FBtr0113012;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|8.2e-32" "Noncode_2.0=n122145_u121243_DQ595536_piRNA_human\|9.5e-07" "unique_Noncode_2.0=u121243_piRNA_human\|8.3e-07" -	362	1,938,086 – 1,938,165	+	15	81	77.35	-1.75	0.84	0.994229
265	dm3.chr2L	1,938,086 – 1,938,165		363	1,938,086 – 1,938,165	-	15	81	77.35	-1.83	0.90	0.994438
266	dm3.chr2L	1,948,458 – 1,948,556	- - - - - - - -	364	1,948,458 – 1,948,556	+	10	105	62.87	-1.04	0.42	0.921015
267	dm3.chr2L	1,965,421 – 1,965,525	FBnoncoding="tRNA;ID=FBtr0077812;Name=tRNA:CR31942-RA;Parent=FBgn0051942;Alias=CR31942-RA;Dbxref=FlyBase_Annotation_IDs:CR31942-RA;score_text=Weakly" tRNAscann="Arg_chr2L_trna1" - - "Rfam_10.0=RF00005;tRNA;AAPU01010529.1/69809-69881\|7.1e-30" - - -	365	1,965,421 – 1,965,525	+	12	120	74.44	-1.34	0.89	0.983609
267	dm3.chr2L	1,965,421 – 1,965,525		366	1,965,421 – 1,965,525	-	12	120	74.44	-2.64	0.90	0.998519
268	dm3.chr2L	1,986,505 – 1,986,601	- - - intron="intron;ID=intron_FBgn0001125:6_FBgn0001125:4;Name=Got2-in;Parent=FBtr0077868;parent_type=mRNA" - - - -	367	1,986,505 – 1,986,601	+	8	110	59.43	-1.79	0.51	0.998742
268	dm3.chr2L	1,986,505 – 1,986,601		368	1,986,505 – 1,986,601	-	8	110	59.43	-1.33	0.40	0.955387
269	dm3.chr2L	1,986,700 – 1,986,796	- - - intron="intron;ID=intron_FBgn0001125:6_FBgn0001125:4;Name=Got2-in;Parent=FBtr0077868;parent_type=mRNA" - - - -	369	1,986,700 – 1,986,796	+	7	117	70.72	-1.35	0.49	0.664608
270	dm3.chr2L	2,001,656 – 2,001,752	- - - intron="intron;ID=intron_FBgn0053543:5_FBgn0053543:4;Name=CG33543-in;Parent=FBtr0091509;parent_type=mRNA" - - - -	370	2,001,656 – 2,001,752	+	6	106	73.40	-1.30	0.60	0.753623
270	dm3.chr2L	2,001,656 – 2,001,752		371	2,001,656 – 2,001,752	-	6	106	73.40	-0.95	0.66	0.632639
271	dm3.chr2L	2,002,342 – 2,002,445	- - - intron="intron;ID=intron_FBgn0053543:6_FBgn0053543:5;Name=CG33543-in;Parent=FBtr0091509;parent_type=mRNA" - - - -	372	2,002,342 – 2,002,445	-	5	112	80.77	-3.76	0.74	0.999191
272	dm3.chr2L	2,009,493 – 2,009,609	FBnoncoding="tRNA;ID=FBtr0077819;Name=tRNA:CR31944-RA;Parent=FBgn0051944;Alias=CR31944-RA;Dbxref=FlyBase_Annotation_IDs:CR31944-RA;score_text=Weakly" tRNAscann="Gln_chr2L_trna3" - - "Rfam_10.0=RF00005;tRNA;AANI01016231.1/175977-176048\|5.4e-34" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|1.9e-24" "unique_Noncode_2.0=u183049_mRNAlike\|1.7e-24" -	373	2,009,493 – 2,009,609	+	13	135	76.63	-0.62	0.81	0.779514
272	dm3.chr2L	2,009,493 – 2,009,609		374	2,009,493 – 2,009,609	-	13	135	76.63	-1.93	0.86	0.994367
273	dm3.chr2L	2,010,627 – 2,010,724	FBnoncoding="tRNA;ID=FBtr0077862;Name=tRNA:CR31939-RA;Parent=FBgn0051939;Alias=CR31939-RA;Dbxref=FlyBase_Annotation_IDs:CR31939-RA;score_text=Weakly" tRNAscann="Gln_chr2L_trna39" - intron="intron;ID=intron_FBgn0031384:1_FBgn0031384:4;Name=CG4238-in;Parent=FBtr0301068;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AANI01016231.1/175977-176048\|4.4e-34" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|1.5e-24" "unique_Noncode_2.0=u183049_mRNAlike\|1.3e-24" -	375	2,010,627 – 2,010,724	+	12	114	83.72	-2.33	0.89	0.992814
273	dm3.chr2L	2,010,627 – 2,010,724		376	2,010,627 – 2,010,724	-	12	114	83.72	-1.56	0.84	0.923214
274	dm3.chr2L	2,010,858 – 2,010,949	FBnoncoding="tRNA;ID=FBtr0077861;Name=tRNA:CR31940-RA;Parent=FBgn0051940;Alias=CR31940-RA;Dbxref=FlyBase_Annotation_IDs:CR31940-RA;score_text=Weakly" tRNAscann="Gln_chr2L_trna38" - intron="intron;ID=intron_FBgn0031384:1_FBgn0031384:4;Name=CG4238-in;Parent=FBtr0301068;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AANI01016231.1/175977-176048\|2.4e-29" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|2.1e-20" "unique_Noncode_2.0=u183049_mRNAlike\|1.9e-20" -	377	2,010,858 – 2,010,949	+	11	95	85.78	-2.63	0.94	0.996402
274	dm3.chr2L	2,010,858 – 2,010,949		378	2,010,858 – 2,010,949	-	11	95	85.78	-1.48	0.95	0.956025
275	dm3.chr2L	2,016,654 – 2,016,781	- - - intron="intron;ID=intron_FBgn0031384:1_FBgn0031384:4;Name=CG4238-in;Parent=FBtr0301068;parent_type=mRNA" - - - -	379	2,016,654 – 2,016,781	+	5	137	70.95	-1.72	0.39	0.522795
276	dm3.chr2L	2,017,759 – 2,017,850	- - CDS="CDS;ID=CDS_FBgn0031384:2_788;Name=CG4238-cds;Parent=FBtr0301067;parent_type=mRNA" intron="intron;ID=intron_FBgn0031384:1_FBgn0031384:4;Name=CG4238-in;Parent=FBtr0301068;parent_type=mRNA" - - - -	380	2,017,759 – 2,017,850	-	13	117	76.70	-1.14	0.62	0.545311
277	dm3.chr2L	2,019,030 – 2,019,189	- - - intron="intron;ID=intron_FBgn0031384:2_FBgn0031384:4;Name=CG4238-in;Parent=FBtr0301067;parent_type=mRNA" - - - -	381	2,019,030 – 2,019,189	+	5	160	78.94	-2.21	0.54	0.831124
278	dm3.chr2L	2,019,883 – 2,019,979	- - - intron="intron;ID=intron_FBgn0031384:2_FBgn0031384:4;Name=CG4238-in;Parent=FBtr0301067;parent_type=mRNA" - - - -	382	2,019,883 – 2,019,979	+	6	99	86.97	-1.90	0.74	0.756328
279	dm3.chr2L	2,034,927 – 2,035,041	- - CDS="CDS;ID=CDS_FBgn0259192:1_760;Name=CG42296-cds;Parent=FBtr0299676;parent_type=mRNA" - - - - -	383	2,034,927 – 2,035,041	+	10	114	75.65	-2.05	0.50	0.967398
280	dm3.chr2L	2,045,440 – 2,045,534	- - - - - - - -	384	2,045,440 – 2,045,534	+	7	102	64.64	-1.72	0.30	0.534281
280	dm3.chr2L	2,045,440 – 2,045,534	- - - - - - - -	385	2,045,440 – 2,045,534	-	7	102	64.64	-2.22	0.26	0.750964
281	dm3.chr2L	2,049,815 – 2,049,884	- - - - - - - -	386	2,049,815 – 2,049,884	+	10	84	73.02	-1.32	0.53	0.641616
282	dm3.chr2L	2,056,773 – 2,056,866	- - - intron="intron;ID=intron_CG15377:3_CG15377:4;Name=Or22c-in;Parent=FBtr0077826;parent_type=mRNA" - - - -	387	2,056,773 – 2,056,866	+	5	98	93.68	-1.76	0.97	0.948633
283	dm3.chr2L	2,058,222 – 2,058,347	- - - - - - - -	388	2,058,222 – 2,058,312	-	7	117	69.02	-1.74	0.56	0.954234
				389	2,058,251 – 2,058,347	+	8	120	68.74	-2.50	0.46	0.992592
				390	2,058,251 – 2,058,347	-	8	120	68.74	-2.54	0.33	0.928753
284	dm3.chr2L	2,060,252 – 2,060,368	- - - intron="intron;ID=intron_FBgn0053516:2_FBgn0053516:1;Name=dpr3-in;Parent=FBtr0300671;parent_type=mRNA" - - - -	391	2,060,252 – 2,060,368	+	9	120	81.66	-1.58	0.61	0.714436
285	dm3.chr2L	2,064,918 – 2,064,981	- - - intron="intron;ID=intron_FBgn0053516:4_FBgn0053516:3;Name=dpr3-in;Parent=FBtr0300671;parent_type=mRNA" - - - -	392	2,064,918 – 2,064,981	+	4	63	93.33	-2.48	0.70	0.626229
286	dm3.chr2L	2,078,028 – 2,078,126	- - - intron="intron;ID=intron_FBgn0053516:7_FBgn0053516:6;Name=dpr3-in;Parent=FBtr0300671;parent_type=mRNA" - - - -	393	2,078,028 – 2,078,126	-	6	111	61.94	-1.83	0.27	0.560291
287	dm3.chr2L	2,078,668 – 2,078,769	- - - intron="intron;ID=intron_FBgn0053516:7_FBgn0053516:6;Name=dpr3-in;Parent=FBtr0300671;parent_type=mRNA" - - - -	394	2,078,668 – 2,078,769	-	5	109	81.27	-1.35	0.71	0.530890
288	dm3.chr2L	2,084,746 – 2,084,855	- - - - - - - -	395	2,084,746 – 2,084,855	+	8	117	80.11	-1.88	0.60	0.809073
289	dm3.chr2L	2,088,306 – 2,088,398	- - - - - - - -	396	2,088,306 – 2,088,398	-	3	93	93.53	-1.93	0.88	0.828903
290	dm3.chr2L	2,091,978 – 2,092,107	- - - - - - - -	397	2,091,978 – 2,092,107	-	7	143	75.89	-2.39	0.52	0.957450
291	dm3.chr2L	2,097,957 – 2,098,069	- - - intron="intron;ID=intron_FBgn0053516:8_FBgn0053516:7;Name=dpr3-in;Parent=FBtr0300671;parent_type=mRNA" - - - -	398	2,097,957 – 2,098,069	-	9	140	70.42	-2.53	0.31	0.870470
292	dm3.chr2L	2,112,677 – 2,112,732	- - - - - - - -	399	2,112,677 – 2,112,732	+	3	57	70.59	-2.43	0.60	0.982159
293	dm3.chr2L	2,119,000 – 2,119,109	- - - - - - - -	400	2,119,000 – 2,119,109	+	7	115	48.41	-1.80	0.16	0.644807
294	dm3.chr2L	2,119,266 – 2,119,343	- - - - - - - -	401	2,119,266 – 2,119,343	-	3	88	55.74	-1.61	0.48	0.923050
295	dm3.chr2L	2,125,638 – 2,125,739	- - - - - - - -	402	2,125,638 – 2,125,739	+	6	103	77.25	-2.20	0.55	0.959917
295	dm3.chr2L	2,125,638 – 2,125,739	- - - - - - - -	403	2,125,638 – 2,125,739	-	6	103	77.25	-2.14	0.50	0.905487
296	dm3.chr2L	2,129,131 – 2,129,270	- - CDS="CDS;ID=CDS_CG4259:1_747;Name=CG4259-cds;Parent=FBtr0077854;parent_type=mRNA" - - - - -	404	2,129,131 – 2,129,232	-	5	101	85.94	-1.89	0.74	0.772134
296	dm3.chr2L	2,129,131 – 2,129,270		405	2,129,163 – 2,129,270	-	5	107	88.88	-1.53	0.83	0.634384
297	dm3.chr2L	2,129,762 – 2,129,855	- - - - - - - -	406	2,129,762 – 2,129,855	+	8	97	85.88	-2.03	0.76	0.921590
298	dm3.chr2L	2,136,687 – 2,136,799	- - - - - - - -	407	2,136,687 – 2,136,799	+	14	113	69.19	-0.39	0.49	0.531925
299	dm3.chr2L	2,144,834 – 2,144,932	- - CDS="CDS;ID=CDS_FBgn0031390:16_802;Name=tho2-cds;Parent=FBtr0301660;parent_type=mRNA" - - - - -	408	2,144,834 – 2,144,932	+	7	104	70.08	-1.86	0.40	0.905477
299	dm3.chr2L	2,144,834 – 2,144,932		409	2,144,834 – 2,144,932	-	7	104	70.08	-1.44	0.49	0.915415
300	dm3.chr2L	2,151,582 – 2,151,677	- - - - - - - -	410	2,151,582 – 2,151,677	+	4	95	62.48	-1.61	0.56	0.967283
301	dm3.chr2L	2,155,572 – 2,155,625	- - - - - - - -	411	2,155,572 – 2,155,625	+	3	53	92.31	-4.14	0.85	0.998088
301	dm3.chr2L	2,155,572 – 2,155,625	- - - - - - - -	412	2,155,572 – 2,155,625	-	3	53	92.31	-3.45	0.82	0.992638
302	dm3.chr2L	2,165,177 – 2,165,267	- - - - - - - -	413	2,165,177 – 2,165,267	+	7	104	75.48	-2.25	0.35	0.618119
303	dm3.chr2L	2,167,730 – 2,167,826	- - - - - - - -	414	2,167,730 – 2,167,826	-	7	111	66.68	-1.07	0.54	0.925048
304	dm3.chr2L	2,169,540 – 2,169,633	- - - - - - - -	415	2,169,540 – 2,169,633	-	5	111	82.95	-1.92	0.71	0.832177
305	dm3.chr2L	2,176,479 – 2,176,543	- - - - - - - -	416	2,176,479 – 2,176,543	+	3	71	54.37	-2.35	0.23	0.596703
305	dm3.chr2L	2,176,479 – 2,176,543	- - - - - - - -	417	2,176,479 – 2,176,543	-	3	71	54.37	-1.82	0.49	0.982417
306	dm3.chr2L	2,176,626 – 2,176,733	- - - - - - - -	418	2,176,626 – 2,176,733	+	10	123	76.96	-1.70	0.63	0.938912
307	dm3.chr2L	2,184,663 – 2,184,759	- - - - - - - -	419	2,184,663 – 2,184,759	+	3	96	97.92	-1.17	0.98	0.690062
308	dm3.chr2L	2,187,004 – 2,187,079	FBnoncoding="tRNA;ID=FBtr0077834;Name=tRNA:CR31946-RA;Parent=FBgn0051946;Alias=CR31946-RA;Dbxref=FlyBase_Annotation_IDs:CR31946-RA;score_text=Weakly" tRNAscann="Arg_chr2L_trna5" - - "Rfam_10.0=RF00005;tRNA;AABU01002692.1/2165640-2165712\|8.0e-35" - - -	420	2,187,004 – 2,187,079	+	13	75	89.65	-2.18	0.87	0.969231
308	dm3.chr2L	2,187,004 – 2,187,079		421	2,187,004 – 2,187,079	-	13	75	89.65	-2.52	0.67	0.883419
309	dm3.chr2L	2,200,508 – 2,200,621	- - - - - - - -	422	2,200,508 – 2,200,621	-	4	119	81.94	-2.13	0.64	0.766813
310	dm3.chr2L	2,200,781 – 2,200,941	- - - - - - - -	423	2,200,781 – 2,200,941	+	5	166	82.22	-1.63	0.65	0.512191
311	dm3.chr2L	2,226,022 – 2,226,142	- - - - - - - -	424	2,226,022 – 2,226,142	-	6	120	87.67	-1.24	0.87	0.670607
312	dm3.chr2L	2,240,831 – 2,240,921	- - - - - - - -	425	2,240,831 – 2,240,921	+	11	116	76.92	-1.83	0.47	0.578913
313	dm3.chr2L	2,245,717 – 2,245,824	FBnoncoding="ncRNA;ID=FBtr0304029;Name=CR42859-RA;Parent=FBgn0262106;Dbxref=FlyBase_Annotation_IDs:CR42859-RA;score_text=Strongly" - - - - - - -	426	2,245,717 – 2,245,824	+	7	107	76.75	-1.15	0.86	0.935836
314	dm3.chr2L	2,246,574 – 2,246,675	- - - - - - - -	427	2,246,574 – 2,246,675	+	8	112	68.94	-2.01	0.32	0.664544
315	dm3.chr2L	2,248,873 – 2,248,935	- - - - - - - -	428	2,248,873 – 2,248,935	+	6	74	70.14	-1.97	0.56	0.980170
316	dm3.chr2L	2,262,880 – 2,262,978	- - - - - - - -	429	2,262,880 – 2,262,978	+	5	112	83.77	-3.25	0.81	0.997386
316	dm3.chr2L	2,262,880 – 2,262,978	- - - - - - - -	430	2,262,880 – 2,262,978	-	5	112	83.77	-3.95	0.74	0.998961
317	dm3.chr2L	2,266,208 – 2,266,338	- - - - - - - -	431	2,266,208 – 2,266,306	+	6	112	77.68	-2.26	0.70	0.984834
				432	2,266,208 – 2,266,306	-	6	112	77.68	-1.58	0.71	0.886129
				433	2,266,233 – 2,266,338	+	8	116	66.85	-2.29	0.38	0.978938
318	dm3.chr2L	2,274,059 – 2,274,170	- - - - - - - -	434	2,274,059 – 2,274,170	+	10	117	65.53	-1.87	0.34	0.916794
319	dm3.chr2L	2,278,759 – 2,278,870	- - - - - - - -	435	2,278,759 – 2,278,870	+	7	117	65.47	-1.51	0.34	0.663567
319	dm3.chr2L	2,278,759 – 2,278,870	- - - - - - - -	436	2,278,759 – 2,278,870	-	7	117	65.47	-2.18	0.32	0.941184
320	dm3.chr2L	2,278,942 – 2,279,038	- - - - - - - -	437	2,278,942 – 2,279,038	-	7	104	77.22	-1.31	0.58	0.519106
321	dm3.chr2L	2,283,189 – 2,283,286	- - - - - - - -	438	2,283,189 – 2,283,286	-	5	117	81.63	-1.66	0.71	0.735602
322	dm3.chr2L	2,287,927 – 2,287,986	- - - - - - - -	439	2,287,927 – 2,287,986	+	7	62	72.70	-2.02	0.41	0.898803
322	dm3.chr2L	2,287,927 – 2,287,986	- - - - - - - -	440	2,287,927 – 2,287,986	-	7	62	72.70	-2.06	0.54	0.988628
323	dm3.chr2L	2,292,518 – 2,292,611	- - - - - - - -	441	2,292,518 – 2,292,611	+	5	114	68.29	-2.18	0.41	0.893024
323	dm3.chr2L	2,292,518 – 2,292,611	- - - - - - - -	442	2,292,518 – 2,292,611	-	5	114	68.29	-2.90	0.33	0.955988
324	dm3.chr2L	2,300,870 – 2,300,960	- - - - - - - -	443	2,300,870 – 2,300,960	-	7	98	73.19	-1.87	0.37	0.574845
325	dm3.chr2L	2,302,069 – 2,302,138	- - - - - - - -	444	2,302,069 – 2,302,138	+	7	73	60.93	-1.97	0.22	0.578193
325	dm3.chr2L	2,302,069 – 2,302,138	- - - - - - - -	445	2,302,069 – 2,302,138	-	7	73	60.93	-1.95	0.24	0.683763
326	dm3.chr2L	2,305,138 – 2,305,228	- - - - - - - -	446	2,305,138 – 2,305,228	+	9	102	89.99	-1.94	0.75	0.667588
326	dm3.chr2L	2,305,138 – 2,305,228	- - - - - - - -	447	2,305,138 – 2,305,228	-	9	102	89.99	-1.70	0.91	0.917251
327	dm3.chr2L	2,318,017 – 2,318,107	- - - intron="intron;ID=intron_FBgn0031414:1_FBgn0031414:2;Name=eys-in;Parent=FBtr0114370;parent_type=mRNA" - - - -	448	2,318,017 – 2,318,107	-	6	92	86.26	-1.77	0.82	0.884173
328	dm3.chr2L	2,322,884 – 2,322,976	- - - intron="intron;ID=intron_FBgn0031414:1_FBgn0031414:2;Name=eys-in;Parent=FBtr0114370;parent_type=mRNA" - - - -	449	2,322,884 – 2,322,976	-	6	92	84.71	-1.91	0.68	0.781297
329	dm3.chr2L	2,328,783 – 2,328,883	- - - intron="intron;ID=intron_FBgn0031414:3_FBgn0031414:4;Name=eys-in;Parent=FBtr0114370;parent_type=mRNA" - - - -	450	2,328,783 – 2,328,883	-	6	118	69.62	-1.92	0.42	0.899670
330	dm3.chr2L	2,331,032 – 2,331,135	- - - intron="intron;ID=intron_CG9967:7_CG9967:2;Name=CG9967-in;Parent=FBtr0100648;parent_type=mRNA" - - - -	451	2,331,032 – 2,331,135	-	5	112	75.88	-1.37	0.70	0.784188
331	dm3.chr2L	2,331,212 – 2,331,302	- - - intron="intron;ID=intron_CG9967:7_CG9967:2;Name=CG9967-in;Parent=FBtr0100648;parent_type=mRNA" - - - -	452	2,331,212 – 2,331,302	-	5	95	88.95	-1.14	0.90	0.596296
332	dm3.chr2L	2,331,757 – 2,331,885	- - - intron="intron;ID=intron_CG9967:7_CG9967:2;Name=CG9967-in;Parent=FBtr0100648;parent_type=mRNA" - - - -	453	2,331,757 – 2,331,851	+	9	111	62.29	-1.58	0.31	0.726380
332	dm3.chr2L	2,331,757 – 2,331,885		454	2,331,781 – 2,331,885	+	9	121	61.77	-2.42	0.28	0.976914
333	dm3.chr2L	2,333,321 – 2,333,425	- - - intron="intron;ID=intron_CG9967:7_CG9967:2;Name=CG9967-in;Parent=FBtr0100648;parent_type=mRNA" - - - -	455	2,333,321 – 2,333,425	+	9	109	72.35	-1.96	0.33	0.743522
334	dm3.chr2L	2,344,133 – 2,344,223	- - - intron="intron;ID=intron_FBgn0031414:5_FBgn0031414:6;Name=eys-in;Parent=FBtr0114370;parent_type=mRNA" - - - -	456	2,344,133 – 2,344,223	+	12	120	83.74	-3.01	0.54	0.967654
334	dm3.chr2L	2,344,133 – 2,344,223		457	2,344,133 – 2,344,223	-	12	120	83.74	-2.65	0.53	0.883989
335	dm3.chr2L	2,359,621 – 2,359,730	- - - - - - - -	458	2,359,621 – 2,359,730	+	8	118	76.66	-2.02	0.47	0.779079
335	dm3.chr2L	2,359,621 – 2,359,730	- - - - - - - -	459	2,359,621 – 2,359,730	-	8	118	76.66	-1.70	0.50	0.625598
336	dm3.chr2L	2,364,914 – 2,365,018	- - - - - - - -	460	2,364,914 – 2,365,018	+	7	110	62.33	-1.18	0.38	0.802770
336	dm3.chr2L	2,364,914 – 2,365,018	- - - - - - - -	461	2,364,914 – 2,365,018	-	7	110	62.33	-1.22	0.33	0.585923
337	dm3.chr2L	2,375,893 – 2,376,040	- - - - - - - -	462	2,375,893 – 2,376,009	+	6	119	85.93	-2.33	0.56	0.632470
				463	2,375,933 – 2,376,040	+	4	109	78.24	-3.18	0.60	0.995171
				464	2,375,933 – 2,376,040	-	4	109	78.24	-2.55	0.58	0.958369
338	dm3.chr2L	2,388,584 – 2,388,676	- - - - - - - -	465	2,388,584 – 2,388,676	-	11	111	81.43	-1.75	0.61	0.708722
339	dm3.chr2L	2,392,598 – 2,392,705	- - - - - - - -	466	2,392,598 – 2,392,705	-	12	118	79.44	-2.09	0.48	0.861139
340	dm3.chr2L	2,398,204 – 2,398,297	- - - - - - - -	467	2,398,204 – 2,398,297	+	6	116	80.70	-2.42	0.71	0.976938
341	dm3.chr2L	2,403,882 – 2,403,981	- - - intron="intron;ID=intron_CG9887:3_CG9887:4;Name=VGlut-in;Parent=FBtr0077769;parent_type=mRNA" - - - -	468	2,403,882 – 2,403,981	+	9	112	65.64	-1.62	0.36	0.756457
342	dm3.chr2L	2,411,016 – 2,411,116	- - - - - - - -	469	2,411,016 – 2,411,116	-	13	103	66.95	-0.70	0.54	0.947297
343	dm3.chr2L	2,412,877 – 2,412,967	- - - - - - - -	470	2,412,877 – 2,412,967	+	5	92	93.23	-1.32	0.92	0.660775
344	dm3.chr2L	2,415,375 – 2,415,441	- - - - - - - -	471	2,415,375 – 2,415,441	-	8	69	60.09	-1.64	0.28	0.846657
345	dm3.chr2L	2,416,141 – 2,416,243	- - CDS="CDS;ID=CDS_FBgn0051948:1_757;Name=CG31948-cds;Parent=FBtr0077788;parent_type=mRNA" - - - - -	472	2,416,141 – 2,416,243	+	5	120	59.91	-0.93	0.43	0.658201
346	dm3.chr2L	2,430,156 – 2,430,286	- - - intron="intron;ID=intron_CG9885:1_CG9885:2;Name=dpp-in;Parent=FBtr0077771;parent_type=mRNA" - - - -	473	2,430,156 – 2,430,266	+	3	112	91.92	-2.20	0.81	0.812193
				474	2,430,195 – 2,430,286	+	7	95	86.15	-3.01	0.83	0.995287
				475	2,430,195 – 2,430,286	-	7	95	86.15	-2.05	0.65	0.603219
347	dm3.chr2L	2,433,384 – 2,433,491	- - - intron="intron;ID=intron_CG9885:1_CG9885:2;Name=dpp-in;Parent=FBtr0077771;parent_type=mRNA" - - - -	476	2,433,384 – 2,433,491	+	6	109	83.90	-1.76	0.77	0.855227
348	dm3.chr2L	2,436,714 – 2,436,806	- - - intron="intron;ID=intron_CG9885:1_CG9885:2;Name=dpp-in;Parent=FBtr0077771;parent_type=mRNA" - - - -	477	2,436,714 – 2,436,806	+	8	103	64.94	-1.73	0.38	0.916483
349	dm3.chr2L	2,445,013 – 2,445,123	- - - intron="intron;ID=intron_CG9885:1_CG9885:2;Name=dpp-in;Parent=FBtr0077771;parent_type=mRNA" - - - -	478	2,445,013 – 2,445,123	+	11	116	69.67	-1.50	0.38	0.771877
350	dm3.chr2L	2,446,804 – 2,446,949	- - - intron="intron;ID=intron_CG9885:1_CG9885:2;Name=dpp-in;Parent=FBtr0077771;parent_type=mRNA" - - - -	479	2,446,804 – 2,446,949	-	6	152	81.38	-1.64	0.67	0.733766
351	dm3.chr2L	2,451,468 – 2,451,558	- - - intron="intron;ID=intron_CG9885:4_CG9885:2;Name=dpp-in;Parent=FBtr0077772;parent_type=mRNA" - - - -	480	2,451,468 – 2,451,558	+	8	103	70.50	-1.59	0.40	0.748575
351	dm3.chr2L	2,451,468 – 2,451,558		481	2,451,468 – 2,451,558	-	8	103	70.50	-1.88	0.34	0.709283
352	dm3.chr2L	2,452,542 – 2,452,638	- - - intron="intron;ID=intron_CG9885:6_CG9885:2;Name=dpp-in;Parent=FBtr0077774;parent_type=mRNA" - - - -	482	2,452,542 – 2,452,638	+	7	117	68.82	-0.66	0.59	0.570380
353	dm3.chr2L	2,453,592 – 2,453,693	- - - intron="intron;ID=intron_CG9885:6_CG9885:2;Name=dpp-in;Parent=FBtr0077774;parent_type=mRNA" - - - -	483	2,453,592 – 2,453,693	+	5	101	92.57	-2.34	0.75	0.761666
354	dm3.chr2L	2,455,044 – 2,455,141	- - CDS="CDS;ID=CDS_CG9885:2_706;Name=dpp-cds;Parent=FBtr0077772,FBtr0077773,FBtr0077774,FBtr0077775;parent_type=mRNA" - - - - -	484	2,455,044 – 2,455,141	+	12	107	89.57	-1.20	0.90	0.718094
355	dm3.chr2L	2,455,830 – 2,455,944	- - CDS="CDS;ID=CDS_CG9885:2_746;Name=dpp-cds;Parent=FBtr0077771;parent_type=mRNA" - - - - -	485	2,455,830 – 2,455,944	-	14	117	79.62	-1.75	0.48	0.719105
356	dm3.chr2L	2,457,157 – 2,457,256	- - - intron="intron;ID=intron_CG9885:2_CG9885:3;Name=dpp-in;Parent=FBtr0077772,FBtr0077773,FBtr0077774,FBtr0077775,FBtr0077771;parent_type=mRNA" - - - -	486	2,457,157 – 2,457,256	+	6	105	75.49	-1.00	0.75	0.761213
357	dm3.chr2L	2,467,281 – 2,467,348	- - - - - - - -	487	2,467,281 – 2,467,348	+	10	76	74.62	-0.68	0.65	0.614533
358	dm3.chr2L	2,468,942 – 2,469,042	- - - - - - - -	488	2,468,942 – 2,469,042	-	5	100	68.74	-0.90	0.56	0.709433
359	dm3.chr2L	2,471,492 – 2,471,583	- - - - - - - -	489	2,471,492 – 2,471,583	+	9	115	65.07	-1.44	0.34	0.523233
360	dm3.chr2L	2,476,604 – 2,476,732	- - - - - - - -	490	2,476,604 – 2,476,701	+	6	104	84.33	-4.49	0.72	0.999534
				491	2,476,604 – 2,476,701	-	6	104	84.33	-3.63	0.74	0.998568
				492	2,476,625 – 2,476,732	+	5	115	90.06	-2.91	0.86	0.991662
				493	2,476,625 – 2,476,732	-	5	115	90.06	-2.27	0.83	0.938642
361	dm3.chr2L	2,480,912 – 2,481,010	- - - - - - - -	494	2,480,912 – 2,481,010	-	10	117	84.76	-1.25	0.80	0.569397
362	dm3.chr2L	2,494,104 – 2,494,179	- - - intron="intron;ID=intron_CG9884:1_CG9884:2;Name=oaf-in;Parent=FBtr0077777,FBtr0077778,FBtr0077779,FBtr0077780;parent_type=mRNA" - - - -	495	2,494,104 – 2,494,179	+	8	76	79.80	-2.42	0.75	0.995086
362	dm3.chr2L	2,494,104 – 2,494,179		496	2,494,104 – 2,494,179	-	8	76	79.80	-2.51	0.72	0.995483
363	dm3.chr2L	2,510,785 – 2,510,878	- - - - - - - -	497	2,510,785 – 2,510,878	-	12	117	82.16	-1.92	0.59	0.697529
364	dm3.chr2L	2,515,497 – 2,515,599	- - - - - - - -	498	2,515,497 – 2,515,599	+	5	111	64.09	-1.29	0.48	0.911030
364	dm3.chr2L	2,515,497 – 2,515,599	- - - - - - - -	499	2,515,497 – 2,515,599	-	5	111	64.09	-1.81	0.41	0.948192
365	dm3.chr2L	2,519,412 – 2,519,516	- - - - - - - -	500	2,519,412 – 2,519,516	+	12	109	76.82	-1.23	0.53	0.647999
366	dm3.chr2L	2,530,513 – 2,530,584	- - - - - - - -	501	2,530,513 – 2,530,584	+	6	79	65.39	-2.24	0.48	0.994335
366	dm3.chr2L	2,530,513 – 2,530,584	- - - - - - - -	502	2,530,513 – 2,530,584	-	6	79	65.39	-2.46	0.47	0.996739
367	dm3.chr2L	2,531,447 – 2,531,552	- - - - - - - -	503	2,531,447 – 2,531,552	-	6	111	86.25	-2.14	0.90	0.981381
368	dm3.chr2L	2,533,114 – 2,533,204	- - - - - - - -	504	2,533,114 – 2,533,204	+	5	118	64.17	-1.29	0.40	0.634309
368	dm3.chr2L	2,533,114 – 2,533,204	- - - - - - - -	505	2,533,114 – 2,533,204	-	5	118	64.17	-1.30	0.38	0.536656
369	dm3.chr2L	2,539,269 – 2,539,363	- - - - - - - -	506	2,539,269 – 2,539,363	+	5	94	94.26	-1.87	0.85	0.719702
369	dm3.chr2L	2,539,269 – 2,539,363	- - - - - - - -	507	2,539,269 – 2,539,363	-	5	94	94.26	-2.34	0.82	0.874692
370	dm3.chr2L	2,548,780 – 2,548,870	- - - - - - - -	508	2,548,780 – 2,548,870	+	4	90	59.13	-0.62	0.57	0.812276
371	dm3.chr2L	2,586,077 – 2,586,182	- - - - - - - -	509	2,586,077 – 2,586,182	-	6	108	69.06	-0.82	0.55	0.650243
372	dm3.chr2L	2,586,299 – 2,586,401	- - - - - - - -	510	2,586,299 – 2,586,401	-	5	112	85.78	-1.82	0.74	0.672349
373	dm3.chr2L	2,592,610 – 2,592,713	- - CDS="CDS;ID=CDS_FBgn0031439:3_777;Name=CG15394-cds;Parent=FBtr0113016;parent_type=mRNA" - - - - -	511	2,592,610 – 2,592,713	-	5	120	78.76	-1.22	0.78	0.706776
374	dm3.chr2L	2,593,894 – 2,593,984	- - - - - - - -	512	2,593,894 – 2,593,984	-	12	112	80.54	-2.60	0.38	0.709979
375	dm3.chr2L	2,594,543 – 2,594,680	- - - - - - - -	513	2,594,543 – 2,594,680	+	11	161	80.89	-2.50	0.40	0.606378
376	dm3.chr2L	2,596,670 – 2,596,723	- - - - - - - -	514	2,596,670 – 2,596,723	-	6	53	79.12	-1.67	0.71	0.929053
377	dm3.chr2L	2,601,588 – 2,601,744	- - - - - - - -	515	2,601,588 – 2,601,684	-	12	109	68.42	-1.87	0.33	0.859209
377	dm3.chr2L	2,601,588 – 2,601,744	- - - - - - - -	516	2,601,638 – 2,601,744	-	12	114	78.48	-2.41	0.48	0.951712
378	dm3.chr2L	2,603,778 – 2,603,876	- - - - - - - -	517	2,603,778 – 2,603,876	-	8	108	69.06	-1.59	0.48	0.929615
379	dm3.chr2L	2,612,211 – 2,612,267	- - - - - - - -	518	2,612,211 – 2,612,267	+	7	57	75.50	-1.03	0.57	0.552688
380	dm3.chr2L	2,612,497 – 2,612,613	- - - - - - - -	519	2,612,497 – 2,612,613	+	5	120	76.91	-1.85	0.60	0.813262
381	dm3.chr2L	2,612,736 – 2,612,800	- - - - - - - -	520	2,612,736 – 2,612,800	-	6	66	79.96	-1.97	0.51	0.629311
382	dm3.chr2L	2,615,767 – 2,615,865	- - - - - - - -	521	2,615,767 – 2,615,865	+	11	105	79.65	-1.67	0.55	0.817497
383	dm3.chr2L	2,629,445 – 2,629,556	- - - - - - - -	522	2,629,445 – 2,629,556	+	3	111	80.13	-1.85	0.70	0.641424
384	dm3.chr2L	2,645,516 – 2,645,615	- - - - - - - -	523	2,645,516 – 2,645,615	+	9	113	67.40	-1.10	0.55	0.959555
385	dm3.chr2L	2,649,234 – 2,649,351	- - CDS="CDS;ID=CDS_FBgn0053125:1_825;Name=CG33125-cds;Parent=FBtr0302456;parent_type=mRNA" - - - - -	524	2,649,234 – 2,649,351	+	6	120	65.56	-1.06	0.47	0.824200
386	dm3.chr2L	2,649,547 – 2,649,705	- - CDS="CDS;ID=CDS_FBgn0053125:1_825;Name=CG33125-cds;Parent=FBtr0302456;parent_type=mRNA" - - - - -	525	2,649,547 – 2,649,665	-	6	119	75.89	-3.12	0.60	0.998817
				526	2,649,586 – 2,649,705	+	5	119	90.92	-3.49	0.85	0.996723
				527	2,649,586 – 2,649,705	-	5	119	90.92	-4.19	0.93	0.998978
387	dm3.chr2L	2,668,029 – 2,668,108	- - - - - - - -	528	2,668,029 – 2,668,108	-	6	79	71.24	-1.64	0.49	0.915945
388	dm3.chr2L	2,672,411 – 2,672,510	- - - - - - - -	529	2,672,411 – 2,672,510	+	3	107	87.54	-1.29	0.88	0.582735
389	dm3.chr2L	2,691,361 – 2,691,466	- - - intron="intron;ID=intron_FBgn0051690:5_FBgn0051690:6;Name=CG31690-in;Parent=FBtr0301682;parent_type=mRNA" - - - -	530	2,691,361 – 2,691,466	+	12	116	89.41	-2.60	0.83	0.983477
389	dm3.chr2L	2,691,361 – 2,691,466		531	2,691,361 – 2,691,466	-	12	116	89.41	-2.54	0.78	0.966072
390	dm3.chr2L	2,693,989 – 2,694,093	- - - intron="intron;ID=intron_FBgn0051690:5_FBgn0051690:6;Name=CG31690-in;Parent=FBtr0301682;parent_type=mRNA" - - - -	532	2,693,989 – 2,694,093	+	7	111	75.33	-1.53	0.59	0.844725
390	dm3.chr2L	2,693,989 – 2,694,093		533	2,693,989 – 2,694,093	-	7	111	75.33	-1.73	0.76	0.981526
391	dm3.chr2L	2,697,146 – 2,697,241	- - - - - - - -	534	2,697,146 – 2,697,241	-	12	116	75.36	-0.73	0.68	0.513760
392	dm3.chr2L	2,704,036 – 2,704,131	- - - - - - - -	535	2,704,036 – 2,704,131	-	8	102	70.40	-0.91	0.51	0.526776
393	dm3.chr2L	2,721,872 – 2,721,974	- - - - - - - -	536	2,721,872 – 2,721,974	-	12	113	82.39	-3.14	0.50	0.987271
394	dm3.chr2L	2,723,544 – 2,723,637	- - - - - - - -	537	2,723,544 – 2,723,637	-	7	93	74.70	-1.01	0.58	0.531291
395	dm3.chr2L	2,729,275 – 2,729,394	- - - - - - - -	538	2,729,275 – 2,729,394	-	5	120	84.46	-1.73	0.75	0.703733
396	dm3.chr2L	2,731,942 – 2,732,044	- - - intron="intron;ID=intron_CG31689:14_CG31689:2;Name=CG31689-in;Parent=FBtr0077708;parent_type=mRNA" - - - -	539	2,731,942 – 2,732,044	+	7	110	58.07	-1.83	0.28	0.883461
397	dm3.chr2L	2,734,436 – 2,734,536	- - - intron="intron;ID=intron_CG31689:14_CG31689:2;Name=CG31689-in;Parent=FBtr0077708;parent_type=mRNA" - - - -	540	2,734,436 – 2,734,536	-	4	100	71.96	-1.06	0.69	0.667143
398	dm3.chr2L	2,736,531 – 2,736,675	- - - intron="intron;ID=intron_CG31689:2_CG31689:3;Name=CG31689-in;Parent=FBtr0077705,FBtr0077707,FBtr0077708;parent_type=mRNA" - - - -	541	2,736,531 – 2,736,645	-	6	120	76.55	-1.68	0.49	0.615712
398	dm3.chr2L	2,736,531 – 2,736,675		542	2,736,570 – 2,736,675	+	6	118	79.73	-1.96	0.53	0.628126
399	dm3.chr2L	2,739,978 – 2,740,048	- - - - - - - -	543	2,739,978 – 2,740,048	-	6	70	70.26	-1.43	0.47	0.831433
400	dm3.chr2L	2,750,044 – 2,750,180	- - - - - - - -	544	2,750,044 – 2,750,140	+	6	116	70.84	-1.40	0.56	0.797462
400	dm3.chr2L	2,750,044 – 2,750,180	- - - - - - - -	545	2,750,079 – 2,750,180	+	5	120	80.50	-2.07	0.67	0.855089
401	dm3.chr2L	2,778,705 – 2,778,770	- - - - - - - -	546	2,778,705 – 2,778,770	+	3	74	53.52	-0.73	0.62	0.891603
402	dm3.chr2L	2,784,319 – 2,784,455	- - - intron="intron;ID=intron_CG3139:9_CG3139:10;Name=Syt1-in;Parent=FBtr0077726,FBtr0077727,FBtr0077728,FBtr0077729;parent_type=mRNA" - - - -	547	2,784,319 – 2,784,434	-	12	118	82.59	-1.20	0.70	0.598357
				548	2,784,357 – 2,784,455	+	11	100	84.32	-1.44	0.74	0.643212
				549	2,784,357 – 2,784,455	-	11	100	84.32	-1.88	0.71	0.859345
403	dm3.chr2L	2,798,672 – 2,798,764	- - - - - - - -	550	2,798,672 – 2,798,764	-	7	101	80.62	-1.65	0.68	0.755823
404	dm3.chr2L	2,800,569 – 2,800,728	- - - - - - - -	551	2,800,569 – 2,800,688	+	3	119	66.48	-2.22	0.45	0.908620
				552	2,800,569 – 2,800,688	-	3	119	66.48	-2.25	0.35	0.610657
				553	2,800,609 – 2,800,728	+	4	119	66.42	-1.52	0.49	0.834899
405	dm3.chr2L	2,801,389 – 2,801,493	- - - - - - - -	554	2,801,389 – 2,801,493	+	7	104	74.43	-2.36	0.34	0.655265
406	dm3.chr2L	2,804,617 – 2,804,713	- - - - - - - -	555	2,804,617 – 2,804,713	-	6	97	74.95	-1.34	0.64	0.839465
407	dm3.chr2L	2,833,987 – 2,834,079	- - - - - - - -	556	2,833,987 – 2,834,079	+	5	100	76.66	-1.70	0.52	0.515212
408	dm3.chr2L	2,834,433 – 2,834,490	- - - - - - - -	557	2,834,433 – 2,834,490	-	4	57	67.25	-0.30	1.04	0.791461
409	dm3.chr2L	2,837,014 – 2,837,066	- - - intron="intron;ID=intron_FBgn0031466:4_FBgn0031466:3;Name=CG3119-in;Parent=FBtr0077692;parent_type=mRNA" - - - -	558	2,837,014 – 2,837,066	-	5	52	95.00	-1.84	0.99	0.966708
410	dm3.chr2L	2,858,063 – 2,858,160	- - - intron="intron;ID=intron_CG2991:1_CG2991:8;Name=CG2991-in;Parent=FBtr0077625;parent_type=mRNA" - - - -	559	2,858,063 – 2,858,160	+	7	119	60.36	-2.81	0.36	0.998259
410	dm3.chr2L	2,858,063 – 2,858,160		560	2,858,063 – 2,858,160	-	7	119	60.36	-1.09	0.42	0.805831
411	dm3.chr2L	2,862,369 – 2,862,463	- - - intron="intron;ID=intron_CG2991:8_CG2991:2;Name=CG2991-in;Parent=FBtr0077625;parent_type=mRNA" - - - -	561	2,862,369 – 2,862,463	-	4	97	69.55	-1.95	0.70	0.988416
412	dm3.chr2L	2,875,806 – 2,875,857	- - CDS="CDS;ID=CDS_FBgn0031478:2_835;Name=CG8814-cds;Parent=FBtr0077629;parent_type=mRNA" - - - - -	562	2,875,806 – 2,875,857	+	5	51	63.73	-1.22	0.52	0.955063
413	dm3.chr2L	2,884,196 – 2,884,342	- - - - - - - -	563	2,884,196 – 2,884,342	-	4	147	76.70	-1.76	0.59	0.663162
414	dm3.chr2L	2,886,754 – 2,886,849	- - - intron="intron;ID=intron_FBgn0041111:1_FBgn0041111:4;Name=lilli-in;Parent=FBtr0077632,FBtr0077633;parent_type=mRNA" - - - -	564	2,886,754 – 2,886,849	+	8	97	77.26	-1.70	0.67	0.934805
414	dm3.chr2L	2,886,754 – 2,886,849		565	2,886,754 – 2,886,849	-	8	97	77.26	-1.49	0.62	0.787683
415	dm3.chr2L	2,891,819 – 2,891,912	- - - intron="intron;ID=intron_FBgn0041111:5_FBgn0041111:8;Name=lilli-in;Parent=FBtr0290041;parent_type=mRNA" - - - -	566	2,891,819 – 2,891,912	-	3	103	89.30	-2.16	0.76	0.709701
416	dm3.chr2L	2,892,538 – 2,892,636	- - - intron="intron;ID=intron_FBgn0041111:5_FBgn0041111:8;Name=lilli-in;Parent=FBtr0290041;parent_type=mRNA" - - - -	567	2,892,538 – 2,892,636	+	9	114	80.77	-2.37	0.51	0.894843
417	dm3.chr2L	2,892,673 – 2,892,779	- - - intron="intron;ID=intron_FBgn0041111:5_FBgn0041111:8;Name=lilli-in;Parent=FBtr0290041;parent_type=mRNA" - - - -	568	2,892,673 – 2,892,779	+	7	113	67.52	-1.54	0.68	0.990317
418	dm3.chr2L	2,898,214 – 2,898,345	- - - intron="intron;ID=intron_FBgn0041111:5_FBgn0041111:8;Name=lilli-in;Parent=FBtr0290041;parent_type=mRNA" - - - -	569	2,898,214 – 2,898,308	+	4	110	80.06	-0.75	0.89	0.516968
418	dm3.chr2L	2,898,214 – 2,898,345		570	2,898,249 – 2,898,345	+	4	110	82.00	-1.23	0.80	0.568276
419	dm3.chr2L	2,908,191 – 2,908,242	- - - intron="intron;ID=intron_FBgn0041111:5_FBgn0041111:8;Name=lilli-in;Parent=FBtr0290041;parent_type=mRNA" - - - -	571	2,908,191 – 2,908,242	+	3	53	71.34	-3.31	0.72	0.998971
419	dm3.chr2L	2,908,191 – 2,908,242		572	2,908,191 – 2,908,242	-	3	53	71.34	-2.23	0.42	0.568653
420	dm3.chr2L	2,914,654 – 2,914,745	- - - intron="intron;ID=intron_FBgn0041111:7_FBgn0041111:12;Name=lilli-in;Parent=FBtr0290039;parent_type=mRNA" - - - -	573	2,914,654 – 2,914,745	-	10	112	66.52	-0.95	0.54	0.897910
421	dm3.chr2L	2,919,973 – 2,920,092	- - - intron="intron;ID=intron_FBgn0041111:7_FBgn0041111:12;Name=lilli-in;Parent=FBtr0290039;parent_type=mRNA" - - - -	574	2,919,973 – 2,920,092	+	5	119	86.05	-1.40	0.82	0.612198
422	dm3.chr2L	2,932,786 – 2,932,881	- - - intron="intron;ID=intron_FBgn0041111:9_FBgn0041111:10;Name=lilli-in;Parent=FBtr0077632;parent_type=mRNA" - - - -	575	2,932,786 – 2,932,881	-	5	102	58.37	-2.08	0.20	0.533148
423	dm3.chr2L	2,955,182 – 2,955,362	- - - intron="intron;ID=intron_FBgn0010263:1_FBgn0010263:2;Name=Rbp9-in;Parent=FBtr0290237,FBtr0290238;parent_type=mRNA" - - - -	576	2,955,182 – 2,955,287	-	3	120	86.39	-1.56	0.84	0.678163
423	dm3.chr2L	2,955,182 – 2,955,362		577	2,955,246 – 2,955,362	-	5	120	84.58	-1.21	0.82	0.535720
424	dm3.chr2L	2,962,727 – 2,962,838	- - CDS="CDS;ID=CDS_FBgn0010263:10_801;Name=Rbp9-cds;Parent=FBtr0077639,FBtr0077638,FBtr0077637,FBtr0077640,FBtr0100468,FBtr0290237,FBtr0290238;parent_type=mRNA" - - - - -	578	2,962,727 – 2,962,838	-	14	112	71.79	-1.22	0.39	0.669140
425	dm3.chr2L	2,966,974 – 2,967,105	- - - - - - - -	579	2,966,974 – 2,967,105	+	6	146	75.38	-2.04	0.70	0.984547
425	dm3.chr2L	2,966,974 – 2,967,105	- - - - - - - -	580	2,966,974 – 2,967,105	-	6	146	75.38	-2.01	0.68	0.980070
426	dm3.chr2L	2,994,367 – 2,994,441	- - - - - - - -	581	2,994,367 – 2,994,441	-	7	78	72.41	-1.11	0.60	0.883304
427	dm3.chr2L	3,000,211 – 3,000,262	- - - - - - - -	582	3,000,211 – 3,000,262	+	6	52	88.96	-1.99	0.73	0.689395
427	dm3.chr2L	3,000,211 – 3,000,262	- - - - - - - -	583	3,000,211 – 3,000,262	-	6	52	88.96	-2.43	0.80	0.960542
428	dm3.chr2L	3,001,585 – 3,001,649	- - - - - - - -	584	3,001,585 – 3,001,649	+	6	64	92.71	-0.84	0.97	0.583945
429	dm3.chr2L	3,005,897 – 3,005,993	- - - - - - - -	585	3,005,897 – 3,005,993	-	4	96	73.63	-1.69	0.55	0.698262
430	dm3.chr2L	3,015,724 – 3,015,815	- - - - - - - -	586	3,015,724 – 3,015,815	-	9	107	59.64	-2.83	0.32	0.998550
431	dm3.chr2L	3,026,909 – 3,027,016	- - - - - - - -	587	3,026,909 – 3,027,016	+	12	117	64.97	-0.51	0.54	0.914374
432	dm3.chr2L	3,029,175 – 3,029,253	- - - - - - - -	588	3,029,175 – 3,029,253	+	5	80	81.50	-1.75	0.67	0.735034
433	dm3.chr2L	3,046,087 – 3,046,203	- - - intron="intron;ID=intron_CG3524:2_CG3524:3;Name=v(2)k05816-in;Parent=FBtr0077657;parent_type=mRNA" - - - -	589	3,046,087 – 3,046,203	-	4	118	63.18	-2.43	0.24	0.677053
434	dm3.chr2L	3,046,641 – 3,046,863	- - - intron="intron;ID=intron_CG3524:2_CG3524:3;Name=v(2)k05816-in;Parent=FBtr0077657;parent_type=mRNA" - - - -	590	3,046,641 – 3,046,732	-	4	91	74.54	-2.07	0.47	0.739967
				591	3,046,732 – 3,046,843	+	5	117	76.15	-2.38	0.58	0.980119
				592	3,046,751 – 3,046,863	+	5	119	77.48	-2.06	0.46	0.583070
435	dm3.chr2L	3,048,685 – 3,048,844	FBnoncoding="snRNA;ID=FBtr0077658;Name=snRNA:U5:23D-RA;Parent=FBgn0003934;Dbxref=FlyBase_Annotation_IDs:CR32999-RA,REFSEQ:NR_001612;score_text=Weakly" - - intron="intron;ID=intron_CG3524:3_CG3524:4;Name=v(2)k05816-in;Parent=FBtr0077657;parent_type=mRNA" "Rfam_10.0=RF00020;U5;AC092187.2/3453-3572\|1.8e-62" "Noncode_2.0=n362_u342_AE003581_snRNA_Drosophila\|4.8e-69" "unique_Noncode_2.0=u342_snRNA_Drosophila\|4.2e-69" -	593	3,048,685 – 3,048,844	+	12	161	79.95	-2.64	0.61	0.994842
436	dm3.chr2L	3,059,399 – 3,059,535	- - - intron="intron;ID=intron_FBgn0027571:2_FBgn0027571:3;Name=CG3523-in;Parent=FBtr0290093;parent_type=mRNA" - - - -	594	3,059,399 – 3,059,535	+	6	151	69.87	-1.35	0.46	0.700770
437	dm3.chr2L	3,060,085 – 3,060,203	- - - intron="intron;ID=intron_FBgn0027571:3_FBgn0027571:4;Name=CG3523-in;Parent=FBtr0077659,FBtr0290093;parent_type=mRNA" - - - -	595	3,060,085 – 3,060,203	+	12	118	64.11	-0.71	0.42	0.640459
438	dm3.chr2L	3,067,766 – 3,067,864	- - - - - - - -	596	3,067,766 – 3,067,864	+	11	113	66.75	-3.02	0.44	0.999593
438	dm3.chr2L	3,067,766 – 3,067,864	- - - - - - - -	597	3,067,766 – 3,067,864	-	11	113	66.75	-1.59	0.31	0.571807
439	dm3.chr2L	3,079,749 – 3,079,839	- - - - - - - -	598	3,079,749 – 3,079,839	+	7	115	63.82	-1.89	0.30	0.650298
439	dm3.chr2L	3,079,749 – 3,079,839	- - - - - - - -	599	3,079,749 – 3,079,839	-	7	115	63.82	-2.34	0.49	0.997612
440	dm3.chr2L	3,082,003 – 3,082,110	- - - intron="intron;ID=intron_FBgn0015600:7_FBgn0015600:6;Name=toc-in;Parent=FBtr0077665;parent_type=mRNA" - - - -	600	3,082,003 – 3,082,110	-	9	114	57.52	-1.67	0.22	0.522500
441	dm3.chr2L	3,089,231 – 3,089,321	- - - intron="intron;ID=intron_FBgn0015600:7_FBgn0015600:6;Name=toc-in;Parent=FBtr0077665;parent_type=mRNA" - - - -	601	3,089,231 – 3,089,321	-	6	103	70.26	-2.15	0.34	0.711111
442	dm3.chr2L	3,089,358 – 3,089,465	- - - intron="intron;ID=intron_FBgn0015600:7_FBgn0015600:6;Name=toc-in;Parent=FBtr0077665;parent_type=mRNA" - - - -	602	3,089,358 – 3,089,465	-	5	110	85.83	-1.72	0.79	0.747141
443	dm3.chr2L	3,094,775 – 3,094,874	- - - - - - - -	603	3,094,775 – 3,094,874	+	5	101	93.82	-1.67	0.86	0.617031
444	dm3.chr2L	3,099,231 – 3,099,329	- - - intron="intron;ID=intron_FBgn0015600:11_FBgn0015600:10;Name=toc-in;Parent=FBtr0110903;parent_type=mRNA" - - - -	604	3,099,231 – 3,099,329	+	5	120	78.40	-1.76	0.61	0.808746
445	dm3.chr2L	3,100,246 – 3,100,298	- - - intron="intron;ID=intron_FBgn0015600:12_FBgn0015600:11;Name=toc-in;Parent=FBtr0110903;parent_type=mRNA" - - - -	605	3,100,246 – 3,100,298	+	5	59	64.60	-1.37	0.57	0.957967
446	dm3.chr2L	3,113,897 – 3,114,046	- - - - - - - -	606	3,113,897 – 3,114,016	-	6	119	70.08	-1.23	0.63	0.964486
446	dm3.chr2L	3,113,897 – 3,114,046	- - - - - - - -	607	3,113,936 – 3,114,046	-	7	111	62.91	-0.85	0.44	0.803013
447	dm3.chr2L	3,138,887 – 3,138,944	- - - intron="intron;ID=intron_FBgn0015600:17_FBgn0015600:16;Name=toc-in;Parent=FBtr0077662;parent_type=mRNA" - - - -	608	3,138,887 – 3,138,944	-	5	64	78.93	-1.43	0.72	0.725812
448	dm3.chr2L	3,139,242 – 3,139,350	- - - intron="intron;ID=intron_FBgn0015600:17_FBgn0015600:16;Name=toc-in;Parent=FBtr0077662;parent_type=mRNA" - - - -	609	3,139,242 – 3,139,350	+	5	135	63.18	-2.45	0.28	0.871122
449	dm3.chr2L	3,139,947 – 3,140,080	- - - intron="intron;ID=intron_FBgn0015600:17_FBgn0015600:16;Name=toc-in;Parent=FBtr0077662;parent_type=mRNA" - - - -	610	3,139,947 – 3,140,051	+	7	116	63.16	-1.57	0.32	0.742104
449	dm3.chr2L	3,139,947 – 3,140,080		611	3,139,983 – 3,140,080	+	7	108	59.27	-2.19	0.19	0.796368
450	dm3.chr2L	3,140,855 – 3,140,966	- - - intron="intron;ID=intron_FBgn0015600:17_FBgn0015600:16;Name=toc-in;Parent=FBtr0077662;parent_type=mRNA" - - - -	612	3,140,855 – 3,140,966	-	6	119	83.48	-1.46	0.80	0.783086
451	dm3.chr2L	3,142,079 – 3,142,179	- - - intron="intron;ID=intron_FBgn0015600:17_FBgn0015600:16;Name=toc-in;Parent=FBtr0077662;parent_type=mRNA" - - - -	613	3,142,079 – 3,142,179	+	4	100	79.67	-2.25	0.53	0.742723
452	dm3.chr2L	3,142,740 – 3,142,808	- - - intron="intron;ID=intron_FBgn0015600:17_FBgn0015600:16;Name=toc-in;Parent=FBtr0077662;parent_type=mRNA" - - - -	614	3,142,740 – 3,142,808	+	5	68	65.05	-0.30	0.61	0.518513
453	dm3.chr2L	3,143,248 – 3,143,431	- - - intron="intron;ID=intron_FBgn0015600:17_FBgn0015600:16;Name=toc-in;Parent=FBtr0077662;parent_type=mRNA" - - - -	615	3,143,248 – 3,143,340	+	3	94	54.64	-1.81	0.43	0.965930
453	dm3.chr2L	3,143,248 – 3,143,431		616	3,143,340 – 3,143,431	+	7	109	74.56	-1.78	0.53	0.850078
454	dm3.chr2L	3,149,232 – 3,149,332	- - - - - - - -	617	3,149,232 – 3,149,332	+	8	109	78.52	-1.46	0.76	0.918089
455	dm3.chr2L	3,182,335 – 3,182,428	- - - intron="intron;ID=intron_FBgn0085422:2_FBgn0085422:1;Name=CG34393-in;Parent=FBtr0112637;parent_type=mRNA" - - - -	618	3,182,335 – 3,182,428	-	5	95	76.63	-1.44	0.75	0.862632
456	dm3.chr2L	3,190,147 – 3,190,202	- - - intron="intron;ID=intron_FBgn0085422:8_FBgn0085422:7;Name=CG34393-in;Parent=FBtr0112637;parent_type=mRNA" - - - -	619	3,190,147 – 3,190,202	-	7	61	76.54	-2.19	0.43	0.836532
457	dm3.chr2L	3,199,844 – 3,199,897	- - - - - - - -	620	3,199,844 – 3,199,897	-	7	67	69.98	-1.56	0.49	0.806084
458	dm3.chr2L	3,200,281 – 3,200,333	- - - - - - - -	621	3,200,281 – 3,200,333	-	6	56	85.12	-1.40	0.76	0.500000
459	dm3.chr2L	3,214,312 – 3,214,414	- - - - - - - -	622	3,214,312 – 3,214,414	+	10	109	69.66	-1.69	0.47	0.984254
460	dm3.chr2L	3,220,340 – 3,220,456	- - - - - - - -	623	3,220,340 – 3,220,456	+	6	117	78.84	-1.39	0.61	0.500000
461	dm3.chr2L	3,228,924 – 3,229,001	- - - - - - - -	624	3,228,924 – 3,229,001	-	7	80	66.16	-1.45	0.36	0.728202
462	dm3.chr2L	3,229,572 – 3,229,670	- - - - - - - -	625	3,229,572 – 3,229,670	-	12	110	72.46	-1.50	0.43	0.770038
463	dm3.chr2L	3,240,719 – 3,240,811	- - - - - - - -	626	3,240,719 – 3,240,811	+	5	101	82.11	-1.84	0.69	0.731228
464	dm3.chr2L	3,245,103 – 3,245,210	- - - - - - - -	627	3,245,103 – 3,245,210	+	6	109	78.94	-1.32	0.65	0.639936
465	dm3.chr2L	3,245,334 – 3,245,385	- - - - - - - -	628	3,245,334 – 3,245,385	+	9	53	67.75	-1.24	0.44	0.867679
466	dm3.chr2L	3,245,870 – 3,246,006	- - - - - - - -	629	3,245,870 – 3,246,006	+	3	147	62.56	-1.30	0.54	0.721395
466	dm3.chr2L	3,245,870 – 3,246,006	- - - - - - - -	630	3,245,870 – 3,246,006	-	3	147	62.56	-1.62	0.47	0.734338
467	dm3.chr2L	3,246,431 – 3,246,524	- - - - - - - -	631	3,246,431 – 3,246,524	+	7	109	83.08	-2.73	0.52	0.910767
468	dm3.chr2L	3,259,911 – 3,259,974	- - - - - - - -	632	3,259,911 – 3,259,974	+	8	63	72.70	-1.01	0.53	0.553646
469	dm3.chr2L	3,265,027 – 3,265,122	- - - - - - - -	633	3,265,027 – 3,265,122	+	7	104	63.00	-1.27	0.52	0.983224
470	dm3.chr2L	3,265,755 – 3,265,807	- - - - - - - -	634	3,265,755 – 3,265,807	-	7	57	67.65	-1.10	0.49	0.816579
471	dm3.chr2L	3,268,936 – 3,269,026	- - - - - - - -	635	3,268,936 – 3,269,026	-	8	110	60.66	-1.55	0.32	0.790360
472	dm3.chr2L	3,269,335 – 3,269,426	- - - - - - - -	636	3,269,335 – 3,269,426	-	5	92	71.89	-1.40	0.54	0.641708
473	dm3.chr2L	3,272,180 – 3,272,241	- - - - - - - -	637	3,272,180 – 3,272,241	-	6	69	76.96	-1.04	0.72	0.632977
474	dm3.chr2L	3,275,226 – 3,275,366	- - - - - - - -	638	3,275,226 – 3,275,341	+	7	116	62.54	-1.18	0.45	0.949161
474	dm3.chr2L	3,275,226 – 3,275,366	- - - - - - - -	639	3,275,265 – 3,275,366	+	8	115	57.78	-1.00	0.52	0.983896
475	dm3.chr2L	3,302,098 – 3,302,242	- - - intron="intron;ID=intron_CG9663:1_CG9663:2;Name=CG9663-in;Parent=FBtr0077604;parent_type=mRNA" - - - -	640	3,302,098 – 3,302,242	+	4	159	77.61	-2.24	0.49	0.682573
475	dm3.chr2L	3,302,098 – 3,302,242		641	3,302,098 – 3,302,242	-	4	159	77.61	-2.42	0.47	0.757158
476	dm3.chr2L	3,305,559 – 3,305,666	- - - - - - - -	642	3,305,559 – 3,305,666	-	9	108	66.93	-1.76	0.35	0.896465
477	dm3.chr2L	3,317,855 – 3,317,909	- - - intron="intron;ID=intron_FBgn0031519:2_FBgn0031519:1;Name=CG3326-in;Parent=FBtr0077603;parent_type=mRNA" - - - -	643	3,317,855 – 3,317,909	-	3	54	95.06	-1.43	0.99	0.893344
478	dm3.chr2L	3,343,191 – 3,343,317	- - - intron="intron;ID=intron_CG3327:3_CG3327:4;Name=E23-in;Parent=FBtr0089981;parent_type=mRNA" - - - -	644	3,343,191 – 3,343,287	-	8	112	60.45	-2.49	0.26	0.959140
478	dm3.chr2L	3,343,191 – 3,343,317		645	3,343,222 – 3,343,317	-	5	105	68.12	-2.12	0.76	0.997863
479	dm3.chr2L	3,349,213 – 3,349,306	- - - intron="intron;ID=intron_CG3327:3_CG3327:4;Name=E23-in;Parent=FBtr0089981;parent_type=mRNA" - - - -	646	3,349,213 – 3,349,306	+	6	119	73.44	-1.78	0.51	0.750833
480	dm3.chr2L	3,366,393 – 3,366,502	- - - intron="intron;ID=intron_FBgn0085423:13_FBgn0085423:12;Name=CG34394-in;Parent=FBtr0112638,FBtr0112639,FBtr0112641,FBtr0306333;parent_type=mRNA" - - - -	647	3,366,393 – 3,366,502	-	7	120	68.41	-1.73	0.32	0.549759
481	dm3.chr2L	3,368,731 – 3,368,821	- - - intron="intron;ID=intron_FBgn0085423:15_FBgn0085423:14;Name=CG34394-in;Parent=FBtr0112639,FBtr0112641;parent_type=mRNA" - - - -	648	3,368,731 – 3,368,821	-	3	110	64.94	-1.86	0.56	0.913195
482	dm3.chr2L	3,381,199 – 3,381,345	- - - - - - - -	649	3,381,199 – 3,381,345	-	6	172	63.00	-1.02	0.38	0.500000
483	dm3.chr2L	3,381,947 – 3,382,040	- - - - - - - -	650	3,381,947 – 3,382,040	+	9	111	61.62	-1.07	0.36	0.605415
484	dm3.chr2L	3,386,140 – 3,386,235	- - - - - - - -	651	3,386,140 – 3,386,235	-	6	98	83.14	-2.61	0.53	0.889596
485	dm3.chr2L	3,391,263 – 3,391,313	- - - - - - - -	652	3,391,263 – 3,391,313	+	5	51	82.54	-2.48	0.68	0.963194
485	dm3.chr2L	3,391,263 – 3,391,313	- - - - - - - -	653	3,391,263 – 3,391,313	-	5	51	82.54	-2.92	0.52	0.940820
486	dm3.chr2L	3,392,656 – 3,392,805	- - - - - - - -	654	3,392,656 – 3,392,770	+	6	118	80.33	-2.51	0.46	0.813732
486	dm3.chr2L	3,392,656 – 3,392,805	- - - - - - - -	655	3,392,696 – 3,392,805	+	6	114	81.93	-2.35	0.61	0.931764
487	dm3.chr2L	3,393,029 – 3,393,127	- - - - - - - -	656	3,393,029 – 3,393,127	+	9	108	68.80	-1.49	0.34	0.500000
488	dm3.chr2L	3,402,662 – 3,402,766	- - - - - - - -	657	3,402,662 – 3,402,766	-	6	107	83.42	-1.59	0.72	0.702618
489	dm3.chr2L	3,414,581 – 3,414,716	- - - intron="intron;ID=intron_FBgn0031530:7_FBgn0031530:6;Name=pgant2-in;Parent=FBtr0077592,FBtr0303992;parent_type=mRNA" - - - -	658	3,414,581 – 3,414,693	-	8	120	75.33	-1.88	0.54	0.935775
489	dm3.chr2L	3,414,581 – 3,414,716		659	3,414,613 – 3,414,716	-	8	122	73.07	-2.41	0.46	0.979598
490	dm3.chr2L	3,415,018 – 3,415,113	- - - intron="intron;ID=intron_FBgn0031530:7_FBgn0031530:6;Name=pgant2-in;Parent=FBtr0077592,FBtr0303992;parent_type=mRNA" - - - -	660	3,415,018 – 3,415,113	-	8	97	77.94	-1.58	0.53	0.656861
491	dm3.chr2L	3,419,751 – 3,419,805	- - - intron="intron;ID=intron_FBgn0031530:7_FBgn0031530:6;Name=pgant2-in;Parent=FBtr0077592,FBtr0303992;parent_type=mRNA" - - - -	661	3,419,751 – 3,419,805	+	3	54	97.53	-2.13	0.92	0.916930
491	dm3.chr2L	3,419,751 – 3,419,805		662	3,419,751 – 3,419,805	-	3	54	97.53	-1.65	0.93	0.764512
492	dm3.chr2L	3,431,619 – 3,431,737	- - - - - - - -	663	3,431,619 – 3,431,737	+	5	120	96.13	-2.10	0.83	0.714066
493	dm3.chr2L	3,441,223 – 3,441,313	- - - - - - - -	664	3,441,223 – 3,441,313	+	5	90	86.22	-2.48	0.66	0.906659
493	dm3.chr2L	3,441,223 – 3,441,313	- - - - - - - -	665	3,441,223 – 3,441,313	-	5	90	86.22	-2.15	0.69	0.817822
494	dm3.chr2L	3,444,030 – 3,444,124	- - - - - - - -	666	3,444,030 – 3,444,124	+	7	108	66.42	-1.22	0.46	0.683996
495	dm3.chr2L	3,453,412 – 3,453,484	- - CDS="CDS;ID=CDS_FBgn0031535:3_777;Name=CG12795-cds;Parent=FBtr0113019;parent_type=mRNA" - - - - -	667	3,453,412 – 3,453,484	-	13	81	69.92	-0.82	0.67	0.899882
496	dm3.chr2L	3,463,261 – 3,463,428	- - CDS="CDS;ID=CDS_CG3241:3_706;Name=msl-2-cds;Parent=FBtr0077571;parent_type=mRNA" - - - - -	668	3,463,261 – 3,463,428	+	9	184	67.07	-2.48	0.39	0.995343
496	dm3.chr2L	3,463,261 – 3,463,428		669	3,463,261 – 3,463,428	-	9	184	67.07	-2.47	0.38	0.994152
497	dm3.chr2L	3,481,942 – 3,482,047	- - - intron="intron;ID=intron_FBgn0031542:2_FBgn0031542:1;Name=CG15414-in;Parent=FBtr0077568;parent_type=mRNA" - - - -	670	3,481,942 – 3,482,047	+	6	106	76.08	-1.77	0.48	0.730182
498	dm3.chr2L	3,482,351 – 3,482,446	- - - intron="intron;ID=intron_FBgn0031542:2_FBgn0031542:1;Name=CG15414-in;Parent=FBtr0077568;parent_type=mRNA" - - - -	671	3,482,351 – 3,482,446	+	6	98	76.81	-1.75	0.61	0.914308
499	dm3.chr2L	3,485,291 – 3,485,385	- - - intron="intron;ID=intron_FBgn0031542:2_FBgn0031542:1;Name=CG15414-in;Parent=FBtr0077568;parent_type=mRNA" - - - -	672	3,485,291 – 3,485,385	-	8	118	67.16	-1.14	0.45	0.579775
500	dm3.chr2L	3,489,233 – 3,489,358	- - - intron="intron;ID=intron_FBgn0031542:2_FBgn0031542:1;Name=CG15414-in;Parent=FBtr0077568;parent_type=mRNA" - - - -	673	3,489,233 – 3,489,337	-	12	118	68.08	-1.51	0.34	0.652367
500	dm3.chr2L	3,489,233 – 3,489,358		674	3,489,266 – 3,489,358	-	12	112	69.23	-1.51	0.38	0.773446
501	dm3.chr2L	3,516,289 – 3,516,389	- - - - - - - -	675	3,516,289 – 3,516,389	+	13	105	66.43	-0.89	0.43	0.825400
502	dm3.chr2L	3,519,796 – 3,519,886	- - - - - - - -	676	3,519,796 – 3,519,886	-	6	90	68.74	-0.80	0.53	0.688694
503	dm3.chr2L	3,528,948 – 3,529,038	- - - intron="intron;ID=intron_FBgn0031549:3_FBgn0031549:2;Name=Spindly-in;Parent=FBtr0301590;parent_type=mRNA" - - - -	677	3,528,948 – 3,529,038	-	12	106	60.60	-0.99	0.44	0.933513
504	dm3.chr2L	3,555,725 – 3,555,804	- - - - - - - -	678	3,555,725 – 3,555,804	+	4	81	88.52	-1.96	0.79	0.774101
505	dm3.chr2L	3,582,713 – 3,582,798	- - - - - - - -	679	3,582,713 – 3,582,798	-	9	89	87.35	-1.98	0.70	0.781887
506	dm3.chr2L	3,587,227 – 3,587,383	- - - - - - - -	680	3,587,227 – 3,587,383	-	6	168	78.73	-1.35	0.73	0.783056
507	dm3.chr2L	3,592,589 – 3,592,690	- - - - - - - -	681	3,592,589 – 3,592,690	-	9	111	83.71	-1.94	0.72	0.923723
508	dm3.chr2L	3,594,369 – 3,594,512	- - - - - - - -	682	3,594,369 – 3,594,512	+	13	150	90.11	-2.09	0.80	0.928726
509	dm3.chr2L	3,598,406 – 3,598,501	- - - - - - - -	683	3,598,406 – 3,598,501	+	8	102	87.49	-2.76	0.58	0.879985
510	dm3.chr2L	3,606,254 – 3,606,362	- - CDS="CDS;ID=CDS_CG3851:1_705;Name=odd-cds;Parent=FBtr0077557;parent_type=mRNA" - - - - -	684	3,606,254 – 3,606,362	+	12	117	74.73	-1.03	0.64	0.791492
511	dm3.chr2L	3,609,325 – 3,609,417	- - - - - - - -	685	3,609,325 – 3,609,417	-	7	103	71.52	-1.15	0.53	0.635731
512	dm3.chr2L	3,617,771 – 3,617,868	- - - - - - - -	686	3,617,771 – 3,617,868	+	11	117	60.42	-2.15	0.26	0.934342
512	dm3.chr2L	3,617,771 – 3,617,868	- - - - - - - -	687	3,617,771 – 3,617,868	-	11	117	60.42	-2.00	0.23	0.783548
513	dm3.chr2L	3,629,220 – 3,629,324	- - - intron="intron;ID=intron_FBgn0000721:13_FBgn0000721:10;Name=for-in;Parent=FBtr0089308;parent_type=mRNA" - - - -	688	3,629,220 – 3,629,320	+	4	101	62.63	-3.34	0.51	0.999795
				689	3,629,220 – 3,629,320	-	4	101	62.63	-2.13	0.49	0.992855
				690	3,629,224 – 3,629,324	+	4	102	64.44	-3.15	0.55	0.999652
				691	3,629,224 – 3,629,324	-	4	102	64.44	-2.21	0.55	0.995673
514	dm3.chr2L	3,632,593 – 3,632,647	- - - - - - - -	692	3,632,593 – 3,632,647	+	5	54	89.44	-2.58	0.73	0.924219
515	dm3.chr2L	3,639,549 – 3,639,656	- - - - - - - -	693	3,639,549 – 3,639,656	+	6	120	64.61	-1.18	0.44	0.751072
516	dm3.chr2L	3,640,187 – 3,640,285	- - - - - - - -	694	3,640,187 – 3,640,285	+	7	113	74.93	-1.41	0.55	0.520095
517	dm3.chr2L	3,640,401 – 3,640,499	- - - - - - - -	695	3,640,401 – 3,640,499	+	13	118	74.19	-1.11	0.62	0.858253
517	dm3.chr2L	3,640,401 – 3,640,499	- - - - - - - -	696	3,640,401 – 3,640,499	-	13	118	74.19	-1.05	0.59	0.766209
518	dm3.chr2L	3,659,014 – 3,659,064	- - - - - - - -	697	3,659,014 – 3,659,064	+	8	50	96.93	-1.11	0.99	0.748303
519	dm3.chr2L	3,665,181 – 3,665,275	- - - intron="intron;ID=intron_FBgn0085369:1_FBgn0085369:2;Name=CG34340-in;Parent=FBtr0302391;parent_type=mRNA" - - - -	698	3,665,181 – 3,665,275	+	9	106	84.28	-1.45	0.72	0.612010
520	dm3.chr2L	3,666,272 – 3,666,410	- - - intron="intron;ID=intron_FBgn0085369:1_FBgn0085369:2;Name=CG34340-in;Parent=FBtr0302391;parent_type=mRNA" - - - -	699	3,666,272 – 3,666,410	+	9	143	76.41	-1.59	0.56	0.916181
521	dm3.chr2L	3,671,347 – 3,671,449	- - - - - - - -	700	3,671,347 – 3,671,449	-	11	116	70.59	-1.17	0.42	0.542638
522	dm3.chr2L	3,683,486 – 3,683,538	- - - intron="intron;ID=intron_FBgn0085369:4_FBgn0085369:5;Name=CG34340-in;Parent=FBtr0302391;parent_type=mRNA" - - - -	701	3,683,486 – 3,683,538	+	7	56	73.84	-0.77	0.72	0.736369
523	dm3.chr2L	3,685,049 – 3,685,196	- - - intron="intron;ID=intron_FBgn0085369:6_FBgn0085369:7;Name=CG34340-in;Parent=FBtr0302391;parent_type=mRNA" - - - -	702	3,685,049 – 3,685,196	-	12	152	87.92	-2.09	0.75	0.891209
524	dm3.chr2L	3,685,766 – 3,685,859	- - - intron="intron;ID=intron_FBgn0085369:6_FBgn0085369:7;Name=CG34340-in;Parent=FBtr0302391;parent_type=mRNA" - - - -	703	3,685,766 – 3,685,859	-	12	117	68.55	-1.70	0.31	0.508392
525	dm3.chr2L	3,686,501 – 3,686,600	- - - intron="intron;ID=intron_FBgn0085369:6_FBgn0085369:7;Name=CG34340-in;Parent=FBtr0302391;parent_type=mRNA" - - - -	704	3,686,501 – 3,686,600	+	8	105	73.68	-1.02	0.61	0.648645
526	dm3.chr2L	3,702,070 – 3,702,121	- - CDS="CDS;ID=CDS_FBgn0262621:2_782;Name=CG43145-cds;Parent=FBtr0305483;parent_type=mRNA" - - - - -	705	3,702,070 – 3,702,121	+	5	51	83.73	-2.20	0.69	0.913419
527	dm3.chr2L	3,712,327 – 3,712,438	- - CDS="CDS;ID=CDS_FBgn0051955:1_843;Name=CG31955-cds;Parent=FBtr0077540,FBtr0303782;parent_type=mRNA" - - - - -	706	3,712,327 – 3,712,438	-	6	120	73.51	-1.99	0.53	0.950006
528	dm3.chr2L	3,723,779 – 3,723,863	- - - intron="intron;ID=intron_FBgn0003386:10_FBgn0003386:11;Name=Shaw-in;Parent=FBtr0089274;parent_type=mRNA" - - - -	707	3,723,779 – 3,723,863	+	4	84	93.25	-0.65	1.03	0.707078
529	dm3.chr2L	3,736,787 – 3,736,872	- - - - - - - -	708	3,736,787 – 3,736,872	+	6	98	61.34	-0.88	0.62	0.964527
529	dm3.chr2L	3,736,787 – 3,736,872	- - - - - - - -	709	3,736,787 – 3,736,872	-	6	98	61.34	-1.07	0.63	0.983321
530	dm3.chr2L	3,740,357 – 3,740,436	- - - - - - - -	710	3,740,357 – 3,740,436	+	5	79	96.94	-1.57	0.88	0.500000
531	dm3.chr2L	3,744,701 – 3,744,832	- - - - - - - -	711	3,744,701 – 3,744,832	-	4	132	88.59	-2.08	0.70	0.578112
532	dm3.chr2L	3,752,324 – 3,752,437	- - - - - - - -	712	3,752,324 – 3,752,437	+	5	116	77.79	-1.89	0.77	0.975257
533	dm3.chr2L	3,755,651 – 3,755,757	- - - - - - - -	713	3,755,651 – 3,755,756	-	6	108	92.64	-2.36	0.75	0.798937
533	dm3.chr2L	3,755,651 – 3,755,757	- - - - - - - -	714	3,755,656 – 3,755,757	-	6	104	92.03	-2.33	0.78	0.869921
534	dm3.chr2L	3,758,900 – 3,759,006	- - - intron="intron;ID=intron_CG31959:4_CG31959:5;Name=CG31959-in;Parent=FBtr0077488;parent_type=mRNA" - - - -	715	3,758,900 – 3,759,006	-	10	109	65.27	-1.04	0.34	0.500000
535	dm3.chr2L	3,759,739 – 3,759,838	- - - - - - - -	716	3,759,739 – 3,759,838	-	10	119	84.77	-3.34	0.46	0.957951
536	dm3.chr2L	3,775,867 – 3,775,974	- - - intron="intron;ID=intron_CG10021:2_CG10021:3;Name=bowl-in;Parent=FBtr0077490,FBtr0077491,FBtr0077492;parent_type=mRNA" - - - -	717	3,775,867 – 3,775,974	-	6	115	88.75	-1.75	0.78	0.664259
537	dm3.chr2L	3,787,615 – 3,787,707	- - - - - - - -	718	3,787,615 – 3,787,707	+	5	92	83.48	-1.92	0.60	0.549106
538	dm3.chr2L	3,796,911 – 3,797,026	- - - - - - - -	719	3,796,911 – 3,797,026	+	6	119	79.23	-1.69	0.72	0.932878
538	dm3.chr2L	3,796,911 – 3,797,026	- - - - - - - -	720	3,796,911 – 3,797,026	-	6	119	79.23	-1.16	0.71	0.650027
539	dm3.chr2L	3,799,370 – 3,799,462	- - - - - - - -	721	3,799,370 – 3,799,462	+	13	94	63.92	-0.28	0.45	0.588810
540	dm3.chr2L	3,817,964 – 3,818,056	- - - - - - - -	722	3,817,964 – 3,818,056	-	11	106	67.58	-1.22	0.48	0.922989
541	dm3.chr2L	3,825,336 – 3,825,427	- - - - - - - -	723	3,825,336 – 3,825,427	+	10	117	78.89	-1.19	0.69	0.642764
541	dm3.chr2L	3,825,336 – 3,825,427	- - - - - - - -	724	3,825,336 – 3,825,427	-	10	117	78.89	-1.96	0.62	0.929427
542	dm3.chr2L	3,843,912 – 3,844,005	- - - - - - - -	725	3,843,912 – 3,844,005	+	12	115	85.95	-2.41	0.62	0.885898
543	dm3.chr2L	3,846,078 – 3,846,183	- - - - - - - -	726	3,846,078 – 3,846,183	-	7	109	67.88	-1.74	0.43	0.935745
544	dm3.chr2L	3,849,590 – 3,849,683	- - - - - - - -	727	3,849,590 – 3,849,683	+	12	109	75.34	-1.46	0.55	0.819436
545	dm3.chr2L	3,858,053 – 3,858,172	- - - - - - - -	728	3,858,053 – 3,858,156	+	11	115	80.19	-2.14	0.76	0.985576
545	dm3.chr2L	3,858,053 – 3,858,172	- - - - - - - -	729	3,858,058 – 3,858,172	+	12	120	81.69	-1.90	0.67	0.941893
546	dm3.chr2L	3,877,778 – 3,877,831	- - - intron="intron;ID=intron_FBgn0000256:5_FBgn0000256:4;Name=capu-in;Parent=FBtr0077511,FBtr0077512,FBtr0077513,FBtr0290077,FBtr0290078,FBtr0290079,FBtr0290080,FBtr0290081,FBtr0290082;parent_type=mRNA" - - - -	730	3,877,778 – 3,877,831	+	6	56	81.73	-1.43	0.82	0.871308
546	dm3.chr2L	3,877,778 – 3,877,831		731	3,877,778 – 3,877,831	-	6	56	81.73	-2.15	0.73	0.964726
547	dm3.chr2L	3,880,752 – 3,880,856	- - - - - - - -	732	3,880,752 – 3,880,856	+	4	115	70.92	-1.28	0.64	0.764566
548	dm3.chr2L	3,897,608 – 3,897,659	- - - - - - - -	733	3,897,608 – 3,897,659	+	3	56	80.36	-1.24	0.90	0.819595
549	dm3.chr2L	3,902,659 – 3,902,771	- - - - - - - -	734	3,902,659 – 3,902,771	+	6	119	76.50	-2.32	0.46	0.894676
550	dm3.chr2L	3,909,592 – 3,909,695	- - - intron="intron;ID=intron_FBgn0051774:2_FBgn0051774:1;Name=fred-in;Parent=FBtr0077508,FBtr0290301;parent_type=mRNA" - - - -	735	3,909,592 – 3,909,695	+	6	108	83.89	-2.14	0.75	0.950804
550	dm3.chr2L	3,909,592 – 3,909,695		736	3,909,592 – 3,909,695	-	6	108	83.89	-3.28	0.75	0.997583
551	dm3.chr2L	3,915,246 – 3,915,296	- - - intron="intron;ID=intron_FBgn0051774:5_FBgn0051774:4;Name=fred-in;Parent=FBtr0290301;parent_type=mRNA" - - - -	737	3,915,246 – 3,915,296	+	4	50	97.00	-1.14	0.97	0.647813
552	dm3.chr2L	3,934,165 – 3,934,258	- - - intron="intron;ID=intron_FBgn0051774:9_FBgn0051774:8;Name=fred-in;Parent=FBtr0077508,FBtr0290301;parent_type=mRNA" - - - -	738	3,934,165 – 3,934,258	-	12	107	74.50	-0.61	0.60	0.507916
553	dm3.chr2L	3,934,857 – 3,934,949	- - - intron="intron;ID=intron_FBgn0051774:9_FBgn0051774:8;Name=fred-in;Parent=FBtr0077508,FBtr0290301;parent_type=mRNA" - - - -	739	3,934,857 – 3,934,948	+	8	100	80.27	-1.73	0.61	0.768756
553	dm3.chr2L	3,934,857 – 3,934,949		740	3,934,858 – 3,934,949	+	8	100	80.53	-1.76	0.62	0.792060
554	dm3.chr2L	3,935,853 – 3,935,917	- - - intron="intron;ID=intron_FBgn0051774:9_FBgn0051774:8;Name=fred-in;Parent=FBtr0077508,FBtr0290301;parent_type=mRNA" - - - -	741	3,935,853 – 3,935,917	-	5	64	99.37	-1.63	1.00	0.924603
555	dm3.chr2L	3,937,846 – 3,937,939	- - - intron="intron;ID=intron_FBgn0051774:9_FBgn0051774:8;Name=fred-in;Parent=FBtr0077508,FBtr0290301;parent_type=mRNA" - - - -	742	3,937,846 – 3,937,939	+	12	116	80.56	-2.76	0.32	0.511409
556	dm3.chr2L	3,941,863 – 3,941,976	- - - intron="intron;ID=intron_FBgn0051774:9_FBgn0051774:8;Name=fred-in;Parent=FBtr0077508,FBtr0290301;parent_type=mRNA" - - - -	743	3,941,863 – 3,941,957	+	12	118	79.06	-1.60	0.69	0.907914
556	dm3.chr2L	3,941,863 – 3,941,976		744	3,941,880 – 3,941,976	+	12	112	82.27	-2.31	0.61	0.938234
557	dm3.chr2L	3,945,736 – 3,945,827	- - - intron="intron;ID=intron_FBgn0051774:9_FBgn0051774:8;Name=fred-in;Parent=FBtr0077508,FBtr0290301;parent_type=mRNA" - - - -	745	3,945,736 – 3,945,827	+	7	126	51.29	-1.44	0.31	0.749635
557	dm3.chr2L	3,945,736 – 3,945,827		746	3,945,736 – 3,945,827	-	7	126	51.29	-1.33	0.29	0.531092
558	dm3.chr2L	3,952,677 – 3,952,768	- - - - - - - -	747	3,952,677 – 3,952,768	+	9	111	73.84	-1.57	0.47	0.632591
558	dm3.chr2L	3,952,677 – 3,952,768	- - - - - - - -	748	3,952,677 – 3,952,768	-	9	111	73.84	-2.22	0.43	0.910813
559	dm3.chr2L	3,967,464 – 3,967,562	- - - - - - - -	749	3,967,464 – 3,967,562	-	5	98	82.65	-1.99	0.83	0.969743
560	dm3.chr2L	3,972,446 – 3,972,537	- - - - - - - -	750	3,972,446 – 3,972,537	-	5	92	88.51	-3.06	0.65	0.960988
561	dm3.chr2L	3,985,432 – 3,985,526	- - - - - - - -	751	3,985,432 – 3,985,526	-	8	100	80.78	-1.26	0.70	0.656476
562	dm3.chr2L	4,000,128 – 4,000,248	- - - - - - - -	752	4,000,128 – 4,000,248	+	5	120	79.88	-1.88	0.55	0.577408
563	dm3.chr2L	4,005,113 – 4,005,215	- - CDS="CDS;ID=CDS_FBgn0031579:1_842;Name=CG15422-cds;Parent=FBtr0077505;parent_type=mRNA" - - - - -	753	4,005,113 – 4,005,215	+	11	120	75.36	-1.90	0.53	0.905345
564	dm3.chr2L	4,011,281 – 4,011,341	- - - - - - - -	754	4,011,281 – 4,011,341	-	11	62	92.05	-1.35	0.91	0.733394
565	dm3.chr2L	4,019,919 – 4,020,013	- - - - - - - -	755	4,019,919 – 4,020,013	-	6	102	70.23	-1.45	0.42	0.599235
566	dm3.chr2L	4,025,693 – 4,025,745	- - - - - - - -	756	4,025,693 – 4,025,745	+	7	57	68.18	-1.70	0.36	0.752722
567	dm3.chr2L	4,028,271 – 4,028,355	- - - - - - - -	757	4,028,271 – 4,028,355	+	8	85	72.94	-1.88	0.38	0.846746
568	dm3.chr2L	4,033,094 – 4,033,197	- - - intron="intron;ID=intron_CG12676:2_CG12676:3;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	758	4,033,094 – 4,033,197	+	3	104	94.23	-1.48	0.91	0.649947
569	dm3.chr2L	4,049,745 – 4,049,835	- - - intron="intron;ID=intron_CG12676:2_CG12676:3;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	759	4,049,745 – 4,049,835	-	6	114	75.54	-2.30	0.40	0.645552
570	dm3.chr2L	4,055,103 – 4,055,194	- - - intron="intron;ID=intron_CG12676:2_CG12676:3;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	760	4,055,103 – 4,055,194	+	4	100	77.61	-1.94	0.89	0.977764
571	dm3.chr2L	4,058,131 – 4,058,184	- - - intron="intron;ID=intron_CG12676:2_CG12676:3;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	761	4,058,131 – 4,058,184	-	5	53	95.09	-2.72	0.94	0.990475
572	dm3.chr2L	4,064,617 – 4,064,700	- - - intron="intron;ID=intron_CG12676:2_CG12676:3;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	762	4,064,617 – 4,064,700	-	6	103	63.19	-1.61	0.39	0.801326
573	dm3.chr2L	4,071,651 – 4,071,709	- - - intron="intron;ID=intron_CG12676:2_CG12676:3;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	763	4,071,651 – 4,071,709	+	5	58	91.38	-2.42	0.86	0.963768
574	dm3.chr2L	4,073,766 – 4,073,856	- - - intron="intron;ID=intron_CG12676:2_CG12676:3;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	764	4,073,766 – 4,073,856	-	12	104	81.34	-2.05	0.49	0.708864
575	dm3.chr2L	4,085,263 – 4,085,329	- - - intron="intron;ID=intron_CG12676:5_CG12676:6;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	765	4,085,263 – 4,085,329	+	13	76	83.07	-1.90	0.56	0.667323
576	dm3.chr2L	4,086,927 – 4,087,056	- - - intron="intron;ID=intron_CG12676:5_CG12676:6;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	766	4,086,927 – 4,087,056	+	7	144	81.95	-2.22	0.53	0.763633
576	dm3.chr2L	4,086,927 – 4,087,056		767	4,086,927 – 4,087,056	-	7	144	81.95	-2.27	0.59	0.902246
577	dm3.chr2L	4,089,334 – 4,089,454	- - - intron="intron;ID=intron_CG12676:5_CG12676:6;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	768	4,089,334 – 4,089,454	+	3	120	94.44	-1.93	0.84	0.656483
578	dm3.chr2L	4,090,322 – 4,090,392	- - - intron="intron;ID=intron_CG12676:5_CG12676:6;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	769	4,090,322 – 4,090,392	-	7	72	63.49	-0.64	0.50	0.624343
579	dm3.chr2L	4,094,228 – 4,094,318	- - - intron="intron;ID=intron_CG12676:5_CG12676:6;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	770	4,094,228 – 4,094,318	+	10	94	73.10	-1.49	0.50	0.878779
580	dm3.chr2L	4,108,264 – 4,108,360	- - - intron="intron;ID=intron_CG12676:8_CG12676:9;Name=ed-in;Parent=FBtr0077465;parent_type=mRNA" - - - -	771	4,108,264 – 4,108,360	-	5	104	83.37	-1.87	0.76	0.881207
581	dm3.chr2L	4,116,527 – 4,116,597	- - - - - - - -	772	4,116,527 – 4,116,597	-	5	74	82.67	-1.89	0.60	0.507665
582	dm3.chr2L	4,128,556 – 4,128,650	- - - - - - - -	773	4,128,556 – 4,128,650	+	5	97	92.21	-2.26	0.78	0.806908
582	dm3.chr2L	4,128,556 – 4,128,650	- - - - - - - -	774	4,128,556 – 4,128,650	-	5	97	92.21	-4.03	0.92	0.998718
583	dm3.chr2L	4,130,590 – 4,130,698	- - - - - - - -	775	4,130,590 – 4,130,698	+	6	109	81.86	-1.90	0.64	0.805752
584	dm3.chr2L	4,133,115 – 4,133,208	- - - - - - - -	776	4,133,115 – 4,133,208	-	9	95	70.33	-0.90	0.49	0.601302
585	dm3.chr2L	4,138,880 – 4,138,972	- - - - - - - -	777	4,138,880 – 4,138,972	-	8	92	78.59	-2.54	0.49	0.978191
586	dm3.chr2L	4,150,846 – 4,150,957	- - CDS="CDS;ID=CDS_CG2955:1_721;Name=CG2955-cds;Parent=FBtr0077468;parent_type=mRNA" - - - - -	778	4,150,846 – 4,150,957	-	5	111	65.23	-1.23	0.44	0.558066
587	dm3.chr2L	4,151,724 – 4,151,806	- - - - - - - -	779	4,151,724 – 4,151,806	-	6	85	86.91	-1.63	0.80	0.750999
588	dm3.chr2L	4,153,475 – 4,153,614	- - - - - - - -	780	4,153,475 – 4,153,589	-	12	119	96.12	-1.97	0.82	0.626751
588	dm3.chr2L	4,153,475 – 4,153,614	- - - - - - - -	781	4,153,509 – 4,153,614	-	12	118	89.15	-1.81	0.71	0.548754
589	dm3.chr2L	4,154,810 – 4,154,901	- - - - - - - -	782	4,154,810 – 4,154,901	+	6	108	79.74	-2.80	0.49	0.946738
590	dm3.chr2L	4,157,641 – 4,157,719	- - - - - - - -	783	4,157,641 – 4,157,719	+	5	95	66.09	-2.14	0.27	0.603689
591	dm3.chr2L	4,162,781 – 4,162,879	- - - - - - - -	784	4,162,781 – 4,162,879	-	12	119	93.33	-1.63	0.90	0.808747
592	dm3.chr2L	4,167,258 – 4,167,376	- - - - - - - -	785	4,167,258 – 4,167,376	+	12	139	75.31	-1.35	0.57	0.875035
592	dm3.chr2L	4,167,258 – 4,167,376	- - - - - - - -	786	4,167,258 – 4,167,376	-	12	139	75.31	-1.52	0.58	0.937581
593	dm3.chr2L	4,168,059 – 4,168,157	- - - - - - - -	787	4,168,059 – 4,168,157	-	9	108	61.16	-0.42	0.49	0.804355
594	dm3.chr2L	4,171,517 – 4,171,635	- - - - - - - -	788	4,171,517 – 4,171,624	-	7	107	78.19	-2.22	0.48	0.794669
594	dm3.chr2L	4,171,517 – 4,171,635	- - - - - - - -	789	4,171,523 – 4,171,635	-	8	115	79.37	-2.18	0.68	0.973304
595	dm3.chr2L	4,178,369 – 4,178,476	- - - - - - - -	790	4,178,369 – 4,178,476	+	6	110	81.34	-1.69	0.60	0.530225
596	dm3.chr2L	4,211,219 – 4,211,335	- - - intron="intron;ID=intron_CG3352:1_CG3352:2;Name=ft-in;Parent=FBtr0077478;parent_type=mRNA" - - - -	791	4,211,219 – 4,211,309	-	10	98	61.13	-1.21	0.31	0.571714
596	dm3.chr2L	4,211,219 – 4,211,335		792	4,211,233 – 4,211,335	-	11	110	66.47	-0.76	0.46	0.744918
597	dm3.chr2L	4,221,928 – 4,221,982	- - - - - - - -	793	4,221,928 – 4,221,982	+	8	54	94.11	-2.66	0.70	0.791137
597	dm3.chr2L	4,221,928 – 4,221,982	- - - - - - - -	794	4,221,928 – 4,221,982	-	8	54	94.11	-3.23	0.99	0.998050
598	dm3.chr2L	4,223,835 – 4,223,886	- - - - - - - -	795	4,223,835 – 4,223,886	-	3	63	81.32	-2.95	0.58	0.939153
599	dm3.chr2L	4,228,798 – 4,228,888	- - - - - - - -	796	4,228,798 – 4,228,888	-	5	99	75.96	-1.22	0.65	0.583659
600	dm3.chr2L	4,236,372 – 4,236,488	- - - - - - - -	797	4,236,372 – 4,236,488	+	6	118	74.54	-1.44	0.57	0.644060
601	dm3.chr2L	4,243,222 – 4,243,341	- - - - - - - -	798	4,243,222 – 4,243,341	+	3	119	87.01	-2.46	0.77	0.926380
602	dm3.chr2L	4,243,945 – 4,244,085	- - - - - - - -	799	4,243,945 – 4,244,085	-	4	156	79.63	-2.14	0.73	0.956847
603	dm3.chr2L	4,252,453 – 4,252,556	- - - - - - - -	800	4,252,453 – 4,252,556	+	8	118	77.39	-2.31	0.46	0.886370
604	dm3.chr2L	4,252,790 – 4,252,890	- - - - - - - -	801	4,252,790 – 4,252,890	+	8	110	72.43	-1.71	0.61	0.981899
605	dm3.chr2L	4,253,649 – 4,253,744	- - - - - - - -	802	4,253,649 – 4,253,744	+	5	97	93.13	-2.39	0.92	0.978952
606	dm3.chr2L	4,259,010 – 4,259,120	- - - - - - - -	803	4,259,010 – 4,259,120	-	4	110	78.99	-1.16	0.81	0.706761
607	dm3.chr2L	4,259,652 – 4,259,767	- - - - - - - -	804	4,259,652 – 4,259,767	-	6	119	81.06	-1.82	0.55	0.559725
608	dm3.chr2L	4,262,314 – 4,262,409	- - - - - - - -	805	4,262,314 – 4,262,409	-	8	118	73.97	-1.58	0.56	0.838424
609	dm3.chr2L	4,263,989 – 4,264,092	- - - - - - - -	806	4,263,989 – 4,264,092	-	7	112	77.00	-1.80	0.52	0.662446
610	dm3.chr2L	4,265,603 – 4,265,680	- - - - - - - -	807	4,265,603 – 4,265,680	+	5	81	86.77	-2.31	0.81	0.962000
610	dm3.chr2L	4,265,603 – 4,265,680	- - - - - - - -	808	4,265,603 – 4,265,680	-	5	81	86.77	-2.67	0.77	0.979053
611	dm3.chr2L	4,267,729 – 4,267,841	- - - - - - - -	809	4,267,729 – 4,267,841	+	4	120	82.29	-1.42	0.83	0.792748
612	dm3.chr2L	4,272,224 – 4,272,317	- - - - - - - -	810	4,272,224 – 4,272,317	-	5	93	96.08	-2.71	0.91	0.982863
613	dm3.chr2L	4,276,141 – 4,276,236	- - - - - - - -	811	4,276,141 – 4,276,236	-	6	98	68.02	-1.81	0.53	0.992104
614	dm3.chr2L	4,280,865 – 4,280,918	- - - - - - - -	812	4,280,865 – 4,280,918	-	5	57	89.84	-0.86	0.96	0.608858
615	dm3.chr2L	4,281,329 – 4,281,418	- - - - - - - -	813	4,281,329 – 4,281,418	+	6	90	76.27	-2.13	0.48	0.799094
616	dm3.chr2L	4,281,535 – 4,281,631	- - - - - - - -	814	4,281,535 – 4,281,631	-	6	97	64.50	-1.56	0.44	0.946087
617	dm3.chr2L	4,282,772 – 4,282,877	- - - - - - - -	815	4,282,772 – 4,282,877	+	5	107	64.89	-2.51	0.30	0.929445
618	dm3.chr2L	4,312,724 – 4,312,826	- - - intron="intron;ID=intron_FBgn0010473:11_FBgn0010473:13;Name=tutl-in;Parent=FBtr0089269;parent_type=mRNA" - - - -	816	4,312,724 – 4,312,826	+	11	115	73.07	-2.12	0.38	0.886542
618	dm3.chr2L	4,312,724 – 4,312,826		817	4,312,724 – 4,312,826	-	11	115	73.07	-2.14	0.33	0.737891
619	dm3.chr2L	4,316,279 – 4,316,383	- - - intron="intron;ID=intron_FBgn0010473:12_FBgn0010473:14;Name=tutl-in;Parent=FBtr0089271;parent_type=mRNA" - - - -	818	4,316,279 – 4,316,383	+	12	116	78.71	-3.83	0.88	0.999369
619	dm3.chr2L	4,316,279 – 4,316,383		819	4,316,279 – 4,316,383	-	12	116	78.71	-2.43	0.79	0.997144
620	dm3.chr2L	4,316,405 – 4,316,508	- - - intron="intron;ID=intron_FBgn0010473:12_FBgn0010473:14;Name=tutl-in;Parent=FBtr0089271;parent_type=mRNA" - - - -	820	4,316,405 – 4,316,508	+	11	111	85.34	-1.37	0.77	0.663482
621	dm3.chr2L	4,318,889 – 4,319,030	- - CDS="CDS;ID=CDS_FBgn0010473:16_811;Name=tutl-cds;Parent=FBtr0301863;parent_type=mRNA" - - - - -	821	4,318,889 – 4,318,990	+	12	115	85.48	-1.57	0.81	0.867316
621	dm3.chr2L	4,318,889 – 4,319,030		822	4,318,911 – 4,319,030	+	11	119	83.35	-2.66	0.67	0.991022
622	dm3.chr2L	4,319,071 – 4,319,122	- - - intron="intron;ID=intron_FBgn0010473:16_FBgn0010473:17;Name=tutl-in;Parent=FBtr0301863;parent_type=mRNA" - - - -	823	4,319,071 – 4,319,122	+	4	51	85.62	-2.13	0.77	0.904205
623	dm3.chr2L	4,325,880 – 4,326,003	- - - intron="intron;ID=intron_CG16857:1_CG16857:2;Name=CG16857-in;Parent=FBtr0077425;parent_type=mRNA" - - - -	824	4,325,880 – 4,325,996	+	5	124	76.19	-1.78	0.54	0.589918
				825	4,325,880 – 4,325,996	-	5	124	76.19	-2.58	0.60	0.983054
				826	4,325,887 – 4,326,003	-	5	120	77.59	-1.42	0.72	0.774445
624	dm3.chr2L	4,326,289 – 4,326,349	- - - intron="intron;ID=intron_CG16857:1_CG16857:2;Name=CG16857-in;Parent=FBtr0077425;parent_type=mRNA" - - - -	827	4,326,289 – 4,326,349	-	12	66	77.71	-2.17	0.37	0.693961
625	dm3.chr2L	4,332,497 – 4,332,589	- - - - - - - -	828	4,332,497 – 4,332,589	+	4	94	72.42	-2.49	0.42	0.883517
626	dm3.chr2L	4,332,704 – 4,332,823	- - - - - - - -	829	4,332,704 – 4,332,823	+	5	120	86.91	-1.54	0.84	0.741714
627	dm3.chr2L	4,333,492 – 4,333,545	- - - - - - - -	830	4,333,492 – 4,333,545	-	5	53	70.57	-1.97	0.55	0.980792
628	dm3.chr2L	4,334,466 – 4,334,543	- - - intron="intron;ID=intron_FBgn0020762:2_FBgn0020762:3;Name=Atet-in;Parent=FBtr0077426,FBtr0112899;parent_type=mRNA" - - - -	831	4,334,466 – 4,334,543	+	5	92	62.19	-2.28	0.25	0.635340
629	dm3.chr2L	4,357,490 – 4,357,585	- - - - - - - -	832	4,357,490 – 4,357,585	+	6	102	80.25	-1.44	0.71	0.740499
630	dm3.chr2L	4,361,694 – 4,361,814	- - - - - - - -	833	4,361,694 – 4,361,801	+	9	120	71.74	-1.66	0.56	0.980007
				834	4,361,694 – 4,361,801	-	9	120	71.74	-1.25	0.53	0.879314
				835	4,361,724 – 4,361,814	+	9	117	74.01	-2.36	0.45	0.932972
				836	4,361,724 – 4,361,814	-	9	117	74.01	-3.05	0.37	0.973192
631	dm3.chr2L	4,382,691 – 4,382,821	- - - - - - - -	837	4,382,691 – 4,382,788	-	4	120	71.51	-1.73	0.45	0.526463
631	dm3.chr2L	4,382,691 – 4,382,821	- - - - - - - -	838	4,382,731 – 4,382,821	-	3	111	65.84	-1.61	0.49	0.590418
632	dm3.chr2L	4,388,308 – 4,388,403	- - - - - - - -	839	4,388,308 – 4,388,403	+	11	103	67.70	-0.54	0.48	0.512818
633	dm3.chr2L	4,399,608 – 4,399,706	- - - intron="intron;ID=intron_FBgn0022153:9_FBgn0022153:10;Name=l(2)k05819-in;Parent=FBtr0077432,FBtr0305968;parent_type=mRNA" - - - -	840	4,399,608 – 4,399,706	+	11	105	59.14	-0.23	0.47	0.751243
634	dm3.chr2L	4,407,971 – 4,408,090	- - CDS="CDS;ID=CDS_FBgn0031602:1_850;Name=CG15431-cds;Parent=FBtr0077459;parent_type=mRNA" - - - - -	841	4,407,971 – 4,408,090	-	14	120	73.17	-1.46	0.39	0.710605
635	dm3.chr2L	4,408,424 – 4,408,534	- - CDS="CDS;ID=CDS_FBgn0031602:2_850;Name=CG15431-cds;Parent=FBtr0077459;parent_type=mRNA" - - - - -	842	4,408,424 – 4,408,534	-	12	120	69.53	-0.57	0.50	0.510071
636	dm3.chr2L	4,409,297 – 4,409,399	- - - - - - - -	843	4,409,297 – 4,409,399	-	7	109	81.17	-1.34	0.80	0.822753
637	dm3.chr2L	4,418,946 – 4,419,060	FBnoncoding="tRNA;ID=FBtr0077458;Name=tRNA:CR31963-RA;Parent=FBgn0051963;Alias=CR31963-RA;Dbxref=FlyBase_Annotation_IDs:CR31963-RA;score_text=Weakly" tRNAscann="Trp_chr2L_trna34" - - "Rfam_10.0=RF00005;tRNA;AACT01024226.1/911-979\|8.0e-30" - - -	844	4,418,946 – 4,419,060	+	12	128	75.39	-0.74	0.89	0.920786
637	dm3.chr2L	4,418,946 – 4,419,060		845	4,418,946 – 4,419,060	-	12	128	75.39	-0.66	0.88	0.899838
638	dm3.chr2L	4,422,629 – 4,422,725	- - - - - - - -	846	4,422,629 – 4,422,725	+	6	101	77.87	-1.47	0.62	0.711495
639	dm3.chr2L	4,435,497 – 4,435,597	- - - - - - - -	847	4,435,497 – 4,435,597	+	6	106	82.03	-1.66	0.62	0.558073
639	dm3.chr2L	4,435,497 – 4,435,597	- - - - - - - -	848	4,435,497 – 4,435,597	-	6	106	82.03	-1.94	0.65	0.847068
640	dm3.chr2L	4,440,669 – 4,440,768	- - - - - - - -	849	4,440,669 – 4,440,768	+	11	117	86.46	-1.96	0.75	0.884963
641	dm3.chr2L	4,448,008 – 4,448,123	- - CDS="CDS;ID=CDS_CG15438:2_718;Name=CG15438-cds;Parent=FBtr0077456;parent_type=mRNA" - - - - -	850	4,448,008 – 4,448,123	-	15	115	72.13	-1.70	0.32	0.700513
642	dm3.chr2L	4,453,264 – 4,453,355	- - CDS="CDS;ID=CDS_CG15440:2_743;Name=CG15440-cds;Parent=FBtr0077454;parent_type=mRNA" - - - - -	851	4,453,264 – 4,453,355	+	13	111	64.04	-0.64	0.44	0.638268
643	dm3.chr2L	4,465,106 – 4,465,202	- - - - - - - -	852	4,465,106 – 4,465,202	+	7	97	67.89	-2.31	0.25	0.744161
644	dm3.chr2L	4,474,237 – 4,474,316	- - - intron="intron;ID=intron_FBgn0011603:13_FBgn0011603:10;Name=ine-in;Parent=FBtr0077448;parent_type=mRNA" - - - -	853	4,474,237 – 4,474,316	-	6	95	70.54	-1.42	0.47	0.607574
645	dm3.chr2L	4,475,361 – 4,475,423	- - - intron="intron;ID=intron_FBgn0011603:16_FBgn0011603:13;Name=ine-in;Parent=FBtr0077448;parent_type=mRNA" - - - -	854	4,475,361 – 4,475,423	+	5	62	95.81	-1.56	0.94	0.815082
646	dm3.chr2L	4,478,113 – 4,478,218	- - - - - - - -	855	4,478,113 – 4,478,218	+	12	117	68.66	-2.39	0.31	0.946575
646	dm3.chr2L	4,478,113 – 4,478,218	- - - - - - - -	856	4,478,113 – 4,478,218	-	12	117	68.66	-2.82	0.29	0.981164
647	dm3.chr2L	4,479,163 – 4,479,300	- - - - - - - -	857	4,479,163 – 4,479,263	-	7	107	87.78	-2.05	0.66	0.517756
647	dm3.chr2L	4,479,163 – 4,479,300	- - - - - - - -	858	4,479,193 – 4,479,300	-	4	108	96.28	-1.71	0.90	0.725769
648	dm3.chr2L	4,485,411 – 4,485,502	- - - intron="intron;ID=intron_FBgn0053196:7_FBgn0053196:6;Name=dp-in;Parent=FBtr0290006,FBtr0305136,FBtr0305137,FBtr0305138,FBtr0305139,FBtr0305140,FBtr0305141,FBtr0305142,FBtr0305143,FBtr0305144,FBtr0305145,FBtr0305146;parent_type=mRNA" - - - -	859	4,485,411 – 4,485,502	+	4	93	67.75	-2.60	0.42	0.983410
648	dm3.chr2L	4,485,411 – 4,485,502		860	4,485,411 – 4,485,502	-	4	93	67.75	-1.30	0.63	0.927761
649	dm3.chr2L	4,550,358 – 4,550,449	- - - intron="intron;ID=intron_FBgn0053196:71_FBgn0053196:70;Name=dp-in;Parent=FBtr0290006,FBtr0305136,FBtr0305137,FBtr0305138,FBtr0305139,FBtr0305140,FBtr0305141,FBtr0305142,FBtr0305143,FBtr0305144,FBtr0305145,FBtr0305146;parent_type=mRNA" - - - -	861	4,550,358 – 4,550,449	-	12	113	68.75	-2.28	0.28	0.761093
650	dm3.chr2L	4,550,756 – 4,550,849	- - - intron="intron;ID=intron_FBgn0053196:71_FBgn0053196:70;Name=dp-in;Parent=FBtr0290006,FBtr0305136,FBtr0305137,FBtr0305138,FBtr0305139,FBtr0305140,FBtr0305141,FBtr0305142,FBtr0305143,FBtr0305144,FBtr0305145,FBtr0305146;parent_type=mRNA" - - - -	862	4,550,756 – 4,550,849	-	12	113	80.39	-1.32	0.63	0.513711
651	dm3.chr2L	4,565,142 – 4,565,193	- - - intron="intron;ID=intron_FBgn0053196:77_FBgn0053196:76;Name=dp-in;Parent=FBtr0290006,FBtr0305136,FBtr0305137,FBtr0305138,FBtr0305139,FBtr0305140,FBtr0305141,FBtr0305142,FBtr0305143,FBtr0305144,FBtr0305145,FBtr0305146;parent_type=mRNA" - - - -	863	4,565,142 – 4,565,193	+	6	56	82.28	-2.38	0.49	0.668202
652	dm3.chr2L	4,567,093 – 4,567,183	- - - intron="intron;ID=intron_FBgn0053196:77_FBgn0053196:76;Name=dp-in;Parent=FBtr0290006,FBtr0305136,FBtr0305137,FBtr0305138,FBtr0305139,FBtr0305140,FBtr0305141,FBtr0305142,FBtr0305143,FBtr0305144,FBtr0305145,FBtr0305146;parent_type=mRNA" - - - -	864	4,567,093 – 4,567,183	-	12	119	82.42	-3.21	0.28	0.621465
653	dm3.chr2L	4,567,395 – 4,567,512	- - - intron="intron;ID=intron_FBgn0053196:77_FBgn0053196:76;Name=dp-in;Parent=FBtr0290006,FBtr0305136,FBtr0305137,FBtr0305138,FBtr0305139,FBtr0305140,FBtr0305141,FBtr0305142,FBtr0305143,FBtr0305144,FBtr0305145,FBtr0305146;parent_type=mRNA" - - - -	865	4,567,395 – 4,567,512	+	5	118	84.27	-2.52	0.55	0.782127
653	dm3.chr2L	4,567,395 – 4,567,512		866	4,567,395 – 4,567,512	-	5	118	84.27	-2.68	0.66	0.962640
654	dm3.chr2L	4,567,670 – 4,567,766	- - - intron="intron;ID=intron_FBgn0053196:77_FBgn0053196:76;Name=dp-in;Parent=FBtr0290006,FBtr0305136,FBtr0305137,FBtr0305138,FBtr0305139,FBtr0305140,FBtr0305141,FBtr0305142,FBtr0305143,FBtr0305144,FBtr0305145,FBtr0305146;parent_type=mRNA" - - - -	867	4,567,670 – 4,567,766	-	10	110	72.89	-1.33	0.55	0.838299
655	dm3.chr2L	4,581,874 – 4,581,974	- - - intron="intron;ID=intron_FBgn0053196:81_FBgn0053196:80;Name=dp-in;Parent=FBtr0290006,FBtr0305136,FBtr0305137,FBtr0305138,FBtr0305139,FBtr0305140,FBtr0305141,FBtr0305142,FBtr0305143,FBtr0305144,FBtr0305145,FBtr0305146;parent_type=mRNA" - - - -	868	4,581,874 – 4,581,974	+	7	102	82.10	-1.53	0.64	0.603980
656	dm3.chr2L	4,582,715 – 4,582,806	- - - intron="intron;ID=intron_FBgn0053196:81_FBgn0053196:80;Name=dp-in;Parent=FBtr0290006,FBtr0305136,FBtr0305137,FBtr0305138,FBtr0305139,FBtr0305140,FBtr0305141,FBtr0305142,FBtr0305143,FBtr0305144,FBtr0305145,FBtr0305146;parent_type=mRNA" - - - -	869	4,582,715 – 4,582,806	+	5	91	95.38	-1.60	0.88	0.595686
657	dm3.chr2L	4,590,814 – 4,590,924	- - - intron="intron;ID=intron_FBgn0053196:81_FBgn0053196:80;Name=dp-in;Parent=FBtr0290006,FBtr0305136,FBtr0305137,FBtr0305138,FBtr0305139,FBtr0305140,FBtr0305141,FBtr0305142,FBtr0305143,FBtr0305144,FBtr0305145,FBtr0305146;parent_type=mRNA" - - - -	870	4,590,814 – 4,590,924	+	9	113	84.68	-2.01	0.62	0.788575
658	dm3.chr2L	4,592,353 – 4,592,444	- - - - - - - -	871	4,592,353 – 4,592,444	+	10	92	96.53	-1.31	0.93	0.599772
659	dm3.chr2L	4,595,236 – 4,595,346	- - - - - - - -	872	4,595,236 – 4,595,346	-	5	110	92.67	-2.50	0.69	0.658465
660	dm3.chr2L	4,599,164 – 4,599,283	- - - - - - - -	873	4,599,164 – 4,599,283	-	5	119	79.33	-1.87	0.57	0.743835
661	dm3.chr2L	4,601,896 – 4,602,084	- - - - - - - -	874	4,601,896 – 4,602,084	+	3	192	49.73	-2.15	0.20	0.540481
661	dm3.chr2L	4,601,896 – 4,602,084	- - - - - - - -	875	4,601,896 – 4,602,084	-	3	192	49.73	-2.96	0.31	0.996894
662	dm3.chr2L	4,608,830 – 4,608,907	- - - - - - - -	876	4,608,830 – 4,608,907	+	3	87	61.15	-1.19	0.56	0.799620
663	dm3.chr2L	4,611,709 – 4,611,812	- - - - - - - -	877	4,611,709 – 4,611,812	-	12	119	63.23	-1.82	0.22	0.574291
664	dm3.chr2L	4,615,802 – 4,615,868	- - - - - - - -	878	4,615,802 – 4,615,868	+	5	66	96.06	-1.76	0.92	0.838088
664	dm3.chr2L	4,615,802 – 4,615,868	- - - - - - - -	879	4,615,802 – 4,615,868	-	5	66	96.06	-2.39	0.83	0.868691
665	dm3.chr2L	4,619,936 – 4,620,106	- - - - - - - -	880	4,619,936 – 4,620,046	+	12	119	86.10	-2.67	0.66	0.973793
				881	4,619,936 – 4,620,046	-	12	119	86.10	-2.05	0.75	0.932230
				882	4,619,966 – 4,620,077	+	12	119	89.43	-2.91	0.92	0.996435
				883	4,619,966 – 4,620,077	-	12	119	89.43	-3.55	0.94	0.998659
				884	4,620,006 – 4,620,106	+	8	102	86.25	-2.05	0.59	0.537683
				885	4,620,006 – 4,620,106	-	8	102	86.25	-3.07	0.54	0.959779
666	dm3.chr2L	4,623,140 – 4,623,247	- - - - - - - -	886	4,623,140 – 4,623,247	-	12	118	75.19	-1.55	0.47	0.711280
667	dm3.chr2L	4,627,618 – 4,627,718	- - - - - - - -	887	4,627,618 – 4,627,718	-	5	100	98.00	-3.14	0.99	0.996723
668	dm3.chr2L	4,634,757 – 4,634,847	- - - - - - - -	888	4,634,757 – 4,634,847	-	10	97	86.28	-1.46	0.81	0.716226
669	dm3.chr2L	4,637,947 – 4,638,057	- - - - - - - -	889	4,637,947 – 4,638,057	-	5	111	85.39	-1.89	0.70	0.671647
670	dm3.chr2L	4,641,503 – 4,641,618	- - CDS="CDS;ID=CDS_FBgn0083938:2_763;Name=BG642163-cds;Parent=FBtr0110769;parent_type=mRNA" - - - - -	890	4,641,503 – 4,641,618	+	4	120	81.16	-1.85	0.62	0.586363
670	dm3.chr2L	4,641,503 – 4,641,618		891	4,641,503 – 4,641,618	-	4	120	81.16	-1.54	0.71	0.607999
671	dm3.chr2L	4,644,264 – 4,644,415	- - CDS="CDS;ID=CDS_FBgn0031617:2_763;Name=CG15635-cds;Parent=FBtr0300354;parent_type=mRNA" - - - - -	892	4,644,264 – 4,644,415	+	6	153	67.81	-1.63	0.42	0.925574
671	dm3.chr2L	4,644,264 – 4,644,415		893	4,644,264 – 4,644,415	-	6	153	67.81	-1.65	0.45	0.958811
672	dm3.chr2L	4,644,618 – 4,644,679	- - CDS="CDS;ID=CDS_FBgn0031617:2_763;Name=CG15635-cds;Parent=FBtr0300354;parent_type=mRNA" - - - - -	894	4,644,618 – 4,644,679	+	6	70	67.60	-1.10	0.48	0.638950
673	dm3.chr2L	4,646,100 – 4,646,163	- - CDS="CDS;ID=CDS_FBgn0031617:2_763;Name=CG15635-cds;Parent=FBtr0300354;parent_type=mRNA" - - - - -	895	4,646,100 – 4,646,163	+	6	81	65.31	-1.57	0.40	0.656380
674	dm3.chr2L	4,661,823 – 4,661,969	- - - - - - - -	896	4,661,823 – 4,661,877	-	4	54	81.79	-1.31	0.75	0.500000
674	dm3.chr2L	4,661,823 – 4,661,969	- - - - - - - -	897	4,661,877 – 4,661,969	-	3	96	66.43	-2.59	0.34	0.834242
675	dm3.chr2L	4,668,890 – 4,668,944	- - - - - - - -	898	4,668,890 – 4,668,944	+	3	55	70.73	-2.13	0.58	0.930379
675	dm3.chr2L	4,668,890 – 4,668,944	- - - - - - - -	899	4,668,890 – 4,668,944	-	3	55	70.73	-1.95	0.53	0.768757
676	dm3.chr2L	4,677,426 – 4,677,533	- - - - - - - -	900	4,677,426 – 4,677,533	-	11	120	64.41	-1.36	0.35	0.714322
677	dm3.chr2L	4,683,810 – 4,683,924	- - CDS="CDS;ID=CDS_CG12205:2_719;Name=Bsg25A-cds;Parent=FBtr0077423;parent_type=mRNA" intron="intron;ID=intron_CG11929:2_CG11929:3;Name=CG11929-in;Parent=FBtr0077377;parent_type=mRNA" - - - -	901	4,683,810 – 4,683,924	-	6	116	77.95	-2.06	0.55	0.905405
678	dm3.chr2L	4,691,363 – 4,691,467	- - - - - - - -	902	4,691,363 – 4,691,467	-	8	120	68.89	-2.07	0.38	0.865240
679	dm3.chr2L	4,710,395 – 4,710,491	- - - intron="intron;ID=intron_FBgn0085380:2_FBgn0085380:3;Name=CG34351-in;Parent=FBtr0112561;parent_type=mRNA" - - - -	903	4,710,395 – 4,710,491	+	7	118	70.69	-1.90	0.36	0.535291
680	dm3.chr2L	4,714,564 – 4,714,654	- - - intron="intron;ID=intron_FBgn0085380:3_FBgn0085380:4;Name=CG34351-in;Parent=FBtr0112561;parent_type=mRNA" - - - -	904	4,714,564 – 4,714,654	+	10	95	69.02	-0.56	0.60	0.835319
681	dm3.chr2L	4,717,523 – 4,717,616	- - - intron="intron;ID=intron_FBgn0085380:3_FBgn0085380:4;Name=CG34351-in;Parent=FBtr0112561;parent_type=mRNA" - - - -	905	4,717,523 – 4,717,616	+	6	95	86.44	-2.31	0.68	0.886357
682	dm3.chr2L	4,717,955 – 4,718,059	- - - intron="intron;ID=intron_FBgn0085380:4_FBgn0085380:5;Name=CG34351-in;Parent=FBtr0112561;parent_type=mRNA" - - - -	906	4,717,955 – 4,718,059	-	7	114	67.20	-1.40	0.59	0.970031
683	dm3.chr2L	4,724,247 – 4,724,378	- - - - - - - -	907	4,724,247 – 4,724,348	+	10	111	61.56	-0.40	0.51	0.840359
683	dm3.chr2L	4,724,247 – 4,724,378	- - - - - - - -	908	4,724,273 – 4,724,378	+	11	114	56.72	-0.51	0.41	0.748352
684	dm3.chr2L	4,725,804 – 4,725,906	- - - - - - - -	909	4,725,804 – 4,725,906	+	6	118	69.07	-1.47	0.52	0.914103
685	dm3.chr2L	4,730,229 – 4,730,311	- - - - - - - -	910	4,730,229 – 4,730,311	+	12	84	84.82	-1.36	0.68	0.568640
686	dm3.chr2L	4,751,334 – 4,751,447	- - - intron="intron;ID=intron_FBgn0031627:7_FBgn0031627:6;Name=CG15630-in;Parent=FBtr0077418;parent_type=mRNA" - - - -	911	4,751,334 – 4,751,447	-	7	113	71.92	-1.76	0.38	0.762144
687	dm3.chr2L	4,760,618 – 4,760,712	- - - intron="intron;ID=intron_FBgn0031627:7_FBgn0031627:6;Name=CG15630-in;Parent=FBtr0077418;parent_type=mRNA" - - - -	912	4,760,618 – 4,760,712	+	5	99	82.54	-2.42	0.46	0.507845
688	dm3.chr2L	4,761,203 – 4,761,306	- - - intron="intron;ID=intron_FBgn0031627:7_FBgn0031627:6;Name=CG15630-in;Parent=FBtr0077418;parent_type=mRNA" - - - -	913	4,761,203 – 4,761,306	+	12	117	68.58	-1.79	0.36	0.847650
689	dm3.chr2L	4,763,334 – 4,763,441	- - CDS="CDS;ID=CDS_FBgn0260428:1_761;Name=CG42523-cds;Parent=FBtr0300851;parent_type=mRNA" intron="intron;ID=intron_FBgn0031627:7_FBgn0031627:6;Name=CG15630-in;Parent=FBtr0077418;parent_type=mRNA" - - - -	914	4,763,334 – 4,763,441	-	5	120	76.88	-1.35	0.69	0.775583
690	dm3.chr2L	4,783,926 – 4,784,023	- - - intron="intron;ID=intron_FBgn0031627:7_FBgn0031627:6;Name=CG15630-in;Parent=FBtr0077418;parent_type=mRNA" - - - -	915	4,783,926 – 4,784,023	-	12	120	88.85	-2.20	0.64	0.628822
691	dm3.chr2L	4,787,534 – 4,787,627	- - - intron="intron;ID=intron_FBgn0031627:7_FBgn0031627:6;Name=CG15630-in;Parent=FBtr0077418;parent_type=mRNA" - - - -	916	4,787,534 – 4,787,627	-	7	109	64.14	-1.22	0.41	0.642901
692	dm3.chr2L	4,790,999 – 4,791,092	- - - intron="intron;ID=intron_FBgn0031627:7_FBgn0031627:6;Name=CG15630-in;Parent=FBtr0077418;parent_type=mRNA" - - - -	917	4,790,999 – 4,791,092	-	8	93	80.75	-1.86	0.60	0.820628
693	dm3.chr2L	4,797,909 – 4,798,008	- - - intron="intron;ID=intron_CG3244:2_CG3244:3;Name=Clect27-in;Parent=FBtr0077417;parent_type=mRNA" - - - -	918	4,797,909 – 4,798,006	-	5	97	71.64	-1.28	0.56	0.738564
693	dm3.chr2L	4,797,909 – 4,798,008		919	4,797,911 – 4,798,008	-	5	97	70.97	-1.64	0.56	0.935205
694	dm3.chr2L	4,799,836 – 4,799,928	- - - - - - - -	920	4,799,836 – 4,799,928	+	12	111	57.52	-1.63	0.28	0.882735
695	dm3.chr2L	4,801,986 – 4,802,079	- - - - - - - -	921	4,801,986 – 4,802,079	-	9	100	62.41	-1.58	0.27	0.717979
696	dm3.chr2L	4,805,484 – 4,805,596	- - - - - - - -	922	4,805,484 – 4,805,596	+	11	114	80.25	-2.25	0.76	0.993329
696	dm3.chr2L	4,805,484 – 4,805,596	- - - - - - - -	923	4,805,484 – 4,805,596	-	11	114	80.25	-2.48	0.72	0.995560
697	dm3.chr2L	4,820,593 – 4,820,685	- - - - - - - -	924	4,820,593 – 4,820,685	+	12	113	70.42	-0.95	0.48	0.572109
698	dm3.chr2L	4,848,243 – 4,848,369	- - CDS="CDS;ID=CDS_FBgn0031638:1_722;Name=CG11927-cds;Parent=FBtr0077386;parent_type=mRNA" - - - - -	925	4,848,243 – 4,848,340	+	3	116	66.26	-2.36	0.56	0.980376
				926	4,848,243 – 4,848,340	-	3	116	66.26	-2.22	0.61	0.982448
				927	4,848,270 – 4,848,369	-	3	108	64.13	-1.50	0.52	0.730077
699	dm3.chr2L	4,856,538 – 4,856,643	- - - intron="intron;ID=intron_FBgn0051660:2_FBgn0051660:3;Name=pog-in;Parent=FBtr0077388,FBtr0100301,FBtr0304909,FBtr0304910;parent_type=mRNA" - - - -	928	4,856,538 – 4,856,643	+	5	105	72.55	-1.48	0.49	0.526307
700	dm3.chr2L	4,858,770 – 4,858,866	- - - intron="intron;ID=intron_FBgn0051660:2_FBgn0051660:3;Name=pog-in;Parent=FBtr0077388,FBtr0100301,FBtr0304909,FBtr0304910;parent_type=mRNA" - - - -	929	4,858,770 – 4,858,866	+	11	105	84.43	-1.28	0.74	0.547768
701	dm3.chr2L	4,862,539 – 4,862,699	- - - intron="intron;ID=intron_FBgn0051660:2_FBgn0051660:3;Name=pog-in;Parent=FBtr0077388,FBtr0100301,FBtr0304909,FBtr0304910;parent_type=mRNA" - - - -	930	4,862,539 – 4,862,699	-	4	184	72.10	-1.43	0.57	0.734217
702	dm3.chr2L	4,864,169 – 4,864,233	- - - intron="intron;ID=intron_FBgn0051660:2_FBgn0051660:3;Name=pog-in;Parent=FBtr0077388,FBtr0100301,FBtr0304909,FBtr0304910;parent_type=mRNA" - - - -	931	4,864,169 – 4,864,233	-	9	72	82.38	-1.56	0.63	0.540157
703	dm3.chr2L	4,865,933 – 4,866,026	- - CDS="CDS;ID=CDS_FBgn0051660:3_857;Name=pog-cds;Parent=FBtr0304909,FBtr0304910;parent_type=mRNA" - - - - -	932	4,865,933 – 4,866,026	+	6	98	72.41	-0.98	0.60	0.655283
704	dm3.chr2L	4,872,575 – 4,872,695	- - CDS="CDS;ID=CDS_FBgn0051660:11_857;Name=pog-cds;Parent=FBtr0304909,FBtr0304910;parent_type=mRNA" - - - - -	933	4,872,575 – 4,872,695	-	14	120	83.10	-1.69	0.66	0.875059
705	dm3.chr2L	4,885,596 – 4,885,666	- - - - - - - -	934	4,885,596 – 4,885,666	+	8	71	66.89	-3.40	0.82	0.999762
705	dm3.chr2L	4,885,596 – 4,885,666	- - - - - - - -	935	4,885,596 – 4,885,666	-	8	71	66.89	-1.39	0.65	0.992487
706	dm3.chr2L	4,888,846 – 4,888,937	- - - - - - - -	936	4,888,846 – 4,888,937	-	6	114	57.54	-1.03	0.43	0.783585
707	dm3.chr2L	4,922,748 – 4,922,840	- - - - - - - -	937	4,922,748 – 4,922,840	+	4	104	50.66	-1.40	0.28	0.601584
708	dm3.chr2L	5,000,016 – 5,000,120	- - - intron="intron;ID=intron_FBgn0053113:10_FBgn0053113:8;Name=Rtnl1-in;Parent=FBtr0079041;parent_type=mRNA" - - - -	938	5,000,016 – 5,000,120	+	7	112	66.19	-1.48	0.35	0.571360
709	dm3.chr2L	5,000,704 – 5,000,784	- - - - - - - -	939	5,000,704 – 5,000,784	-	5	97	75.93	-1.32	0.65	0.615015
710	dm3.chr2L	5,001,447 – 5,001,541	- - - - - - - -	940	5,001,447 – 5,001,541	+	8	100	66.93	-1.66	0.51	0.987522
710	dm3.chr2L	5,001,447 – 5,001,541	- - - - - - - -	941	5,001,447 – 5,001,541	-	8	100	66.93	-1.14	0.45	0.799411
711	dm3.chr2L	5,023,956 – 5,024,084	- - - intron="intron;ID=intron_CG16858:2_CG16858:3;Name=vkg-in;Parent=FBtr0079036;parent_type=mRNA" - - - -	942	5,023,956 – 5,024,048	+	3	96	87.86	-2.52	0.90	0.985591
711	dm3.chr2L	5,023,956 – 5,024,084		943	5,023,982 – 5,024,084	+	3	103	90.10	-1.41	0.89	0.627289
712	dm3.chr2L	5,036,279 – 5,036,379	- - - intron="intron;ID=intron_CG4145:8_CG4145:9;Name=Cg25C-in;Parent=FBtr0079001,FBtr0079002,FBtr0079003;parent_type=mRNA" - - - -	944	5,036,279 – 5,036,379	+	4	112	74.96	-4.61	0.72	0.999771
712	dm3.chr2L	5,036,279 – 5,036,379		945	5,036,279 – 5,036,379	-	4	112	74.96	-3.30	0.60	0.998064
713	dm3.chr2L	5,058,094 – 5,058,152	- - CDS="CDS;ID=CDS_FBgn0031678:1_825;Name=CG31918-cds;Parent=FBtr0079028;parent_type=mRNA" - - - - -	946	5,058,094 – 5,058,152	-	6	61	68.03	-0.47	0.59	0.525009
714	dm3.chr2L	5,062,828 – 5,062,923	- - CDS="CDS;ID=CDS_FBgn0028572:2_754;Name=qtc-cds;Parent=FBtr0079012;parent_type=mRNA" - - - - -	947	5,062,828 – 5,062,923	+	8	96	76.98	-1.27	0.57	0.733797
715	dm3.chr2L	5,063,917 – 5,064,082	- - - intron="intron;ID=intron_FBgn0028572:2_FBgn0028572:6;Name=qtc-in;Parent=FBtr0079012,FBtr0100260,FBtr0100259;parent_type=mRNA" - - - -	948	5,063,917 – 5,064,082	-	6	187	71.21	-2.24	0.41	0.906658
716	dm3.chr2L	5,067,150 – 5,067,268	- - CDS="CDS;ID=CDS_FBgn0028572:6_825;Name=qtc-cds;Parent=FBtr0302569;parent_type=mRNA" - - - - -	949	5,067,150 – 5,067,268	+	12	120	82.70	-1.59	0.61	0.638056
717	dm3.chr2L	5,068,563 – 5,068,698	FBnoncoding="pre_miRNA;ID=FBtr0304261;Name=mir-2495-RM;Parent=FBgn0262213;Alias=CR42920-RM;Dbxref=FlyBase_Annotation_IDs:CR42920-RM,miRBase:MI0011584" - - intron="intron;ID=intron_FBgn0028572:8_FBgn0028572:10;Name=qtc-in;Parent=FBtr0079014,FBtr0079013,FBtr0079015,FBtr0079012,FBtr0100260;parent_type=mRNA" - - - "mirBase_v16=dme-mir-2495\|2.7e-61"	950	5,068,563 – 5,068,661	+	9	108	69.64	-1.99	0.49	0.986272
				951	5,068,563 – 5,068,661	-	9	108	69.64	-2.32	0.42	0.985515
				952	5,068,593 – 5,068,698	+	7	108	71.30	-1.27	0.61	0.945579
				953	5,068,593 – 5,068,698	-	7	108	71.30	-1.76	0.54	0.976737
718	dm3.chr2L	5,070,975 – 5,071,084	- - - intron="intron;ID=intron_FBgn0028696:1_FBgn0028696:4;Name=RpL37A-in;Parent=FBtr0302570;parent_type=mRNA" - - - -	954	5,070,975 – 5,071,084	+	4	120	66.23	-2.49	0.36	0.926385
719	dm3.chr2L	5,071,389 – 5,071,567	- - - intron="intron;ID=intron_FBgn0028696:5_FBgn0028696:7;Name=RpL37A-in;Parent=FBtr0302570;parent_type=mRNA" - - - -	955	5,071,389 – 5,071,567	+	5	183	70.24	-2.73	0.53	0.996821
720	dm3.chr2L	5,087,932 – 5,088,050	- - - intron="intron;ID=intron_FBgn0031681:10_FBgn0031681:9;Name=pgant5-in;Parent=FBtr0111024,FBtr0079026;parent_type=mRNA" - - - -	956	5,087,932 – 5,088,050	+	5	120	83.95	-1.80	0.67	0.586356
721	dm3.chr2L	5,090,566 – 5,090,661	- - - intron="intron;ID=intron_FBgn0031681:10_FBgn0031681:9;Name=pgant5-in;Parent=FBtr0111024,FBtr0079026;parent_type=mRNA" - - - -	957	5,090,566 – 5,090,661	+	4	120	68.77	-1.86	0.59	0.932131
722	dm3.chr2L	5,097,932 – 5,098,060	- - CDS="CDS;ID=CDS_FBgn0031683:4_747;Name=CG4230-cds;Parent=FBtr0079019;parent_type=mRNA" - - - - -	958	5,097,932 – 5,098,039	+	10	111	75.43	-0.97	0.58	0.708670
				959	5,097,963 – 5,098,059	+	9	111	65.22	-0.86	0.47	0.847571
				960	5,097,967 – 5,098,060	+	9	111	64.76	-1.43	0.45	0.968662
				961	5,097,967 – 5,098,060	-	9	111	64.76	-1.25	0.39	0.818363
723	dm3.chr2L	5,102,863 – 5,102,983	- - CDS="CDS;ID=CDS_FBgn0261836:2_840;Name=Msp-300-cds;Parent=FBtr0303388;parent_type=mRNA" - - - - -	962	5,102,863 – 5,102,983	-	13	120	79.09	-1.27	0.60	0.803111
724	dm3.chr2L	5,103,923 – 5,104,013	- - - intron="intron;ID=intron_FBgn0261836:2_FBgn0261836:4;Name=Msp-300-in;Parent=FBtr0303388,FBtr0303389;parent_type=mRNA" - - - -	963	5,103,923 – 5,104,013	-	6	90	60.64	-1.53	0.35	0.853545
725	dm3.chr2L	5,122,407 – 5,122,501	- - CDS="CDS;ID=CDS_FBgn0261836:6_720;Name=Msp-300-cds;Parent=FBtr0303383;parent_type=mRNA" - - - - -	964	5,122,407 – 5,122,501	+	12	107	73.82	-0.52	0.69	0.688933
726	dm3.chr2L	5,127,088 – 5,127,206	- - CDS="CDS;ID=CDS_FBgn0261836:9_840;Name=Msp-300-cds;Parent=FBtr0303388;parent_type=mRNA" - - - - -	965	5,127,088 – 5,127,206	-	15	118	77.13	-1.51	0.48	0.862364
727	dm3.chr2L	5,141,303 – 5,141,539	- - CDS="CDS;ID=CDS_FBgn0261836:12_720;Name=Msp-300-cds;Parent=FBtr0303383;parent_type=mRNA" - - - - -	966	5,141,303 – 5,141,423	+	11	120	74.42	-2.28	0.54	0.989912
				967	5,141,303 – 5,141,423	-	11	120	74.42	-2.73	0.64	0.998859
				968	5,141,423 – 5,141,539	+	12	120	77.89	-1.42	0.61	0.856485
728	dm3.chr2L	5,152,159 – 5,152,252	- - - - - - - -	969	5,152,159 – 5,152,252	+	11	109	62.24	-0.44	0.50	0.737655
728	dm3.chr2L	5,152,159 – 5,152,252	- - - - - - - -	970	5,152,159 – 5,152,252	-	11	109	62.24	-1.04	0.53	0.978478
729	dm3.chr2L	5,154,775 – 5,154,874	- - CDS="CDS;ID=CDS_FBgn0261836:20_841;Name=Msp-300-cds;Parent=FBtr0303386;parent_type=mRNA" - - - - -	971	5,154,775 – 5,154,874	+	15	114	73.63	-2.67	0.41	0.992442
729	dm3.chr2L	5,154,775 – 5,154,874		972	5,154,775 – 5,154,874	-	15	114	73.63	-2.25	0.34	0.880039
730	dm3.chr2L	5,155,326 – 5,155,446	- - CDS="CDS;ID=CDS_FBgn0261836:21_840;Name=Msp-300-cds;Parent=FBtr0303388;parent_type=mRNA" - - - - -	973	5,155,326 – 5,155,446	-	14	120	80.37	-1.34	0.55	0.522452
731	dm3.chr2L	5,181,170 – 5,181,301	- - CDS="CDS;ID=CDS_FBgn0261836:25_838;Name=Msp-300-cds;Parent=FBtr0303387;parent_type=mRNA" - - - - -	974	5,181,170 – 5,181,261	+	13	104	58.71	-1.91	0.19	0.805793
731	dm3.chr2L	5,181,170 – 5,181,301		975	5,181,191 – 5,181,301	+	13	114	61.97	-1.87	0.21	0.790303
732	dm3.chr2L	5,202,230 – 5,202,285	- - CDS="CDS;ID=CDS_FBgn0261836:32_840;Name=Msp-300-cds;Parent=FBtr0303388;parent_type=mRNA" - - - - -	976	5,202,230 – 5,202,285	+	14	62	72.18	-2.21	0.28	0.723961
733	dm3.chr2L	5,202,385 – 5,202,519	FBnoncoding="snoRNA;ID=FBtr0113538;Name=snoRNA:Psi18S-525k-RA;Parent=FBgn0083028;Dbxref=FlyBase_Annotation_IDs:CR34569-RA,REFSEQ:NR_003755;score_text=Weakly" - - intron="intron;ID=intron_FBgn0261836:32_FBgn0261836:33;Name=Msp-300-in;Parent=FBtr0303389;parent_type=mRNA" - - - -	977	5,202,385 – 5,202,519	+	12	136	76.38	-1.04	0.60	0.725194
734	dm3.chr2L	5,207,576 – 5,207,680	- - - intron="intron;ID=intron_FBgn0031688:1_FBgn0031688:2;Name=Cyp28d2-in;Parent=FBtr0079061;parent_type=mRNA" - - - -	978	5,207,576 – 5,207,680	+	3	104	93.57	-1.29	0.91	0.518495
735	dm3.chr2L	5,221,977 – 5,222,097	- - - intron="intron;ID=intron_CG14026:7_CG14026:3;Name=tkv-in;Parent=FBtr0079089;parent_type=mRNA" - - - -	979	5,221,977 – 5,222,097	+	5	120	84.42	-1.99	0.64	0.663783
736	dm3.chr2L	5,229,082 – 5,229,176	- - - intron="intron;ID=intron_CG14026:7_CG14026:3;Name=tkv-in;Parent=FBtr0079089;parent_type=mRNA" - - - -	980	5,229,082 – 5,229,176	-	7	109	73.56	-1.98	0.47	0.871334
737	dm3.chr2L	5,230,694 – 5,230,788	- - - intron="intron;ID=intron_CG14026:7_CG14026:3;Name=tkv-in;Parent=FBtr0079089;parent_type=mRNA" - - - -	981	5,230,694 – 5,230,788	+	8	113	58.75	-4.42	0.42	0.999978
737	dm3.chr2L	5,230,694 – 5,230,788		982	5,230,694 – 5,230,788	-	8	113	58.75	-2.71	0.16	0.829202
738	dm3.chr2L	5,232,034 – 5,232,131	- - - intron="intron;ID=intron_CG14026:7_CG14026:3;Name=tkv-in;Parent=FBtr0079089;parent_type=mRNA" - - - -	983	5,232,034 – 5,232,131	+	8	104	70.46	-1.74	0.42	0.834993
739	dm3.chr2L	5,239,373 – 5,239,471	- - - - - - - -	984	5,239,373 – 5,239,471	+	8	120	80.84	-1.70	0.65	0.712522
740	dm3.chr2L	5,240,766 – 5,240,850	FBnoncoding="tRNA;ID=FBtr0079064;Name=tRNA:CR31971-RA;Parent=FBgn0051971;Alias=CR31971-RA;Dbxref=FlyBase_Annotation_IDs:CR31971-RA;score_text=Weakly" tRNAscann="Asp_chr2L_trna8" - - "Rfam_10.0=RF00005;tRNA;ABJB010887279.1/1267-1338\|5.1e-24" "Noncode_2.0=n112842_u111940_DQ604839_piRNA_Norway\|2.6e-07" "unique_Noncode_2.0=u111940_piRNA_Norway\|2.3e-07" -	985	5,240,766 – 5,240,850	+	11	84	80.59	-1.13	0.89	0.934624
740	dm3.chr2L	5,240,766 – 5,240,850		986	5,240,766 – 5,240,850	-	11	84	80.59	-0.72	0.84	0.737664
741	dm3.chr2L	5,241,608 – 5,241,698	- - - intron="intron;ID=intron_CG14026:6_CG14026:2;Name=tkv-in;Parent=FBtr0079088;parent_type=mRNA" - - - -	987	5,241,608 – 5,241,698	-	9	114	84.65	-1.05	0.84	0.546786
742	dm3.chr2L	5,245,678 – 5,245,777	- - - - - - - -	988	5,245,678 – 5,245,769	+	6	91	89.22	-2.36	0.87	0.979409
742	dm3.chr2L	5,245,678 – 5,245,777	- - - - - - - -	989	5,245,687 – 5,245,777	+	6	100	80.66	-1.77	0.74	0.930932
743	dm3.chr2L	5,249,883 – 5,249,984	- - - - - - - -	990	5,249,883 – 5,249,984	+	4	113	69.47	-2.01	0.52	0.934744
744	dm3.chr2L	5,250,298 – 5,250,419	- - - - - - - -	991	5,250,298 – 5,250,410	-	8	113	80.72	-1.64	0.67	0.812095
744	dm3.chr2L	5,250,298 – 5,250,419	- - - - - - - -	992	5,250,309 – 5,250,419	-	8	111	80.59	-2.16	0.71	0.975517
745	dm3.chr2L	5,254,133 – 5,254,231	- - - - - - - -	993	5,254,133 – 5,254,231	+	6	102	75.83	-1.65	0.64	0.943006
745	dm3.chr2L	5,254,133 – 5,254,231	- - - - - - - -	994	5,254,133 – 5,254,231	-	6	102	75.83	-1.35	0.55	0.628889
746	dm3.chr2L	5,257,866 – 5,257,983	- - - - - - - -	995	5,257,866 – 5,257,958	+	8	97	76.43	-1.65	0.44	0.500000
				996	5,257,866 – 5,257,958	-	8	97	76.43	-1.08	0.61	0.628149
				997	5,257,886 – 5,257,983	+	9	119	73.83	-1.62	0.45	0.636756
				998	5,257,886 – 5,257,983	-	9	119	73.83	-2.32	0.60	0.994635
747	dm3.chr2L	5,273,126 – 5,273,299	- - CDS="CDS;ID=CDS_FBgn0000228:5_826;Name=Bsg25D-cds;Parent=FBtr0079084,FBtr0079085;parent_type=mRNA" - - - - -	999	5,273,126 – 5,273,299	+	13	177	74.56	-1.17	0.45	0.559319
748	dm3.chr2L	5,276,175 – 5,276,267	- - - intron="intron;ID=intron_FBgn0000228:8_FBgn0000228:7;Name=Bsg25D-in;Parent=FBtr0079084,FBtr0079085,FBtr0302568;parent_type=mRNA" - - - -	1000	5,276,175 – 5,276,267	-	3	92	95.65	-1.53	0.95	0.815418
749	dm3.chr2L	5,276,766 – 5,276,919	- - - intron="intron;ID=intron_FBgn0000228:9_FBgn0000228:8;Name=Bsg25D-in;Parent=FBtr0079084,FBtr0079085,FBtr0302567,FBtr0302568;parent_type=mRNA" - - - -	1001	5,276,766 – 5,276,919	-	5	158	62.19	-1.51	0.35	0.767769
750	dm3.chr2L	5,283,673 – 5,283,793	- - - - - - - -	1002	5,283,673 – 5,283,770	-	8	109	84.73	-2.17	0.81	0.964595
				1003	5,283,701 – 5,283,793	+	7	92	81.32	-1.95	0.63	0.785685
				1004	5,283,701 – 5,283,793	-	7	92	81.32	-3.01	0.67	0.994346
751	dm3.chr2L	5,284,250 – 5,284,388	- - - - - - - -	1005	5,284,250 – 5,284,388	+	8	148	61.75	-1.88	0.23	0.512867
752	dm3.chr2L	5,288,421 – 5,288,521	- - - - - - - -	1006	5,288,421 – 5,288,521	+	6	110	62.15	-0.65	0.43	0.526591
753	dm3.chr2L	5,291,414 – 5,291,505	- - - - - - - -	1007	5,291,414 – 5,291,505	-	6	111	59.43	-1.80	0.29	0.761237
754	dm3.chr2L	5,296,744 – 5,296,876	- - - - - - - -	1008	5,296,744 – 5,296,839	+	4	95	73.90	-1.95	0.66	0.960716
				1009	5,296,784 – 5,296,876	+	3	94	80.29	-3.98	0.70	0.998817
				1010	5,296,784 – 5,296,876	-	3	94	80.29	-2.70	0.56	0.878782
755	dm3.chr2L	5,309,970 – 5,310,020	- - - - - - - -	1011	5,309,970 – 5,310,020	+	3	50	89.33	-2.16	0.98	0.987149
755	dm3.chr2L	5,309,970 – 5,310,020	- - - - - - - -	1012	5,309,970 – 5,310,020	-	3	50	89.33	-3.01	0.97	0.997184
756	dm3.chr2L	5,347,803 – 5,347,894	- - - intron="intron;ID=intron_FBgn0016920:3_FBgn0016920:4;Name=nompC-in;Parent=FBtr0304843;parent_type=mRNA" - - - -	1013	5,347,803 – 5,347,894	+	10	97	71.55	-0.99	0.51	0.528865
757	dm3.chr2L	5,378,140 – 5,378,230	- - - - - - - -	1014	5,378,140 – 5,378,230	+	6	100	67.89	-1.66	0.60	0.974086
758	dm3.chr2L	5,391,853 – 5,391,948	- - - - - - - -	1015	5,391,853 – 5,391,948	+	6	98	81.26	-2.70	0.46	0.909561
759	dm3.chr2L	5,394,209 – 5,394,299	- - - - - - - -	1016	5,394,209 – 5,394,299	-	10	116	73.50	-0.52	0.70	0.529464
760	dm3.chr2L	5,411,799 – 5,411,866	- - - intron="intron;ID=intron_CG6604:3_CG6604:4;Name=H15-in;Parent=FBtr0079076;parent_type=mRNA" - - - -	1017	5,411,799 – 5,411,866	-	8	68	74.21	-1.69	0.40	0.528502
761	dm3.chr2L	5,416,981 – 5,417,101	- - - - - - - -	1018	5,416,981 – 5,417,073	+	11	107	78.55	-2.51	0.62	0.991981
761	dm3.chr2L	5,416,981 – 5,417,101	- - - - - - - -	1019	5,417,005 – 5,417,101	+	11	116	72.11	-2.20	0.45	0.977869
762	dm3.chr2L	5,422,559 – 5,422,661	- - - - - - - -	1020	5,422,559 – 5,422,661	+	10	104	79.83	-1.03	0.71	0.514180
763	dm3.chr2L	5,429,624 – 5,429,723	- - - - - - - -	1021	5,429,624 – 5,429,723	+	12	120	84.04	-1.64	0.64	0.500000
764	dm3.chr2L	5,431,457 – 5,431,561	- - - - - - - -	1022	5,431,457 – 5,431,561	+	5	104	73.58	-1.19	0.75	0.877145
764	dm3.chr2L	5,431,457 – 5,431,561	- - - - - - - -	1023	5,431,457 – 5,431,561	-	5	104	73.58	-1.40	0.59	0.714623
765	dm3.chr2L	5,438,603 – 5,438,738	- - - intron="intron;ID=intron_FBgn0051647:3_FBgn0051647:2;Name=CG31647-in;Parent=FBtr0079132;parent_type=mRNA" - - - -	1024	5,438,603 – 5,438,693	-	7	100	80.92	-1.85	0.79	0.962978
				1025	5,438,637 – 5,438,732	+	10	111	72.01	-1.59	0.47	0.849549
				1026	5,438,637 – 5,438,732	-	10	111	72.01	-2.85	0.62	0.999427
				1027	5,438,639 – 5,438,738	+	10	120	69.42	-1.18	0.46	0.611531
				1028	5,438,639 – 5,438,738	-	10	120	69.42	-2.41	0.59	0.998578
766	dm3.chr2L	5,439,526 – 5,439,592	- - - - - - - -	1029	5,439,526 – 5,439,592	+	11	68	84.89	-1.12	0.83	0.706895
767	dm3.chr2L	5,439,955 – 5,440,090	- - - - - - - -	1030	5,439,955 – 5,440,061	+	10	118	81.80	-2.43	0.69	0.988410
				1031	5,439,989 – 5,440,090	+	10	108	69.54	-2.27	0.95	0.997539
				1032	5,439,989 – 5,440,090	-	10	108	69.54	0.06	0.69	0.641277
768	dm3.chr2L	5,448,132 – 5,448,270	- - - - - - - -	1033	5,448,132 – 5,448,236	+	9	106	78.35	-1.02	0.64	0.614963
				1034	5,448,132 – 5,448,236	-	9	106	78.35	-1.75	0.73	0.980103
				1035	5,448,161 – 5,448,270	-	8	115	79.61	-1.81	0.60	0.882170
769	dm3.chr2L	5,453,067 – 5,453,139	- - - - - - - -	1036	5,453,067 – 5,453,139	+	9	82	56.38	-2.11	0.46	0.999542
769	dm3.chr2L	5,453,067 – 5,453,139	- - - - - - - -	1037	5,453,067 – 5,453,139	-	9	82	56.38	-1.46	0.29	0.862231
770	dm3.chr2L	5,478,785 – 5,478,888	- - - - - - - -	1038	5,478,785 – 5,478,888	+	11	110	84.05	-1.62	0.75	0.842925
771	dm3.chr2L	5,479,958 – 5,480,063	- - - - - - - -	1039	5,479,958 – 5,480,063	-	12	113	84.71	-2.78	0.71	0.990777
772	dm3.chr2L	5,482,732 – 5,482,842	- - - - - - - -	1040	5,482,732 – 5,482,842	-	10	115	82.60	-1.86	0.55	0.683331
773	dm3.chr2L	5,483,090 – 5,483,203	- - - - - - - -	1041	5,483,090 – 5,483,203	+	9	113	91.27	-1.84	0.79	0.706273
773	dm3.chr2L	5,483,090 – 5,483,203	- - - - - - - -	1042	5,483,090 – 5,483,203	-	9	113	91.27	-1.71	0.79	0.600614
774	dm3.chr2L	5,491,597 – 5,491,704	- - - - - - - -	1043	5,491,597 – 5,491,704	-	12	118	75.61	-1.83	0.44	0.800348
775	dm3.chr2L	5,492,172 – 5,492,283	- - - - - - - -	1044	5,492,172 – 5,492,283	+	12	119	87.08	-2.30	0.55	0.609709
776	dm3.chr2L	5,494,411 – 5,494,523	- - - - - - - -	1045	5,494,411 – 5,494,523	+	11	112	94.81	-2.00	1.00	0.984035
776	dm3.chr2L	5,494,411 – 5,494,523	- - - - - - - -	1046	5,494,411 – 5,494,523	-	11	112	94.81	-1.68	0.98	0.949027
777	dm3.chr2L	5,501,630 – 5,501,742	- - - - - - - -	1047	5,501,630 – 5,501,742	-	6	116	82.79	-1.39	0.80	0.771449
778	dm3.chr2L	5,518,812 – 5,518,877	- - - - - - - -	1048	5,518,812 – 5,518,877	+	12	71	85.45	-2.22	0.68	0.921442
779	dm3.chr2L	5,519,909 – 5,519,987	- - - - - - - -	1049	5,519,909 – 5,519,987	+	5	78	72.68	-1.43	0.57	0.845050
779	dm3.chr2L	5,519,909 – 5,519,987	- - - - - - - -	1050	5,519,909 – 5,519,987	-	5	78	72.68	-1.43	0.57	0.845050
780	dm3.chr2L	5,545,864 – 5,545,955	- - - - - - - -	1051	5,545,864 – 5,545,955	+	10	105	63.50	-3.11	0.40	0.999741
780	dm3.chr2L	5,545,864 – 5,545,955	- - - - - - - -	1052	5,545,864 – 5,545,955	-	10	105	63.50	-2.55	0.27	0.980056
781	dm3.chr2L	5,565,618 – 5,565,779	FBnoncoding="snRNA;ID=FBtr0079108;Name=snRNA:U4:25F-RA;Parent=FBgn0041719;Dbxref=FlyBase_Annotation_IDs:CR32998-RA,REFSEQ:NR_001620;score_text=Weakly" - - - "Rfam_10.0=RF00015;U4;AE014134.5/5565619-5565763\|7.3e-65" "Noncode_2.0=n369_u349_AE003610_snRNA_Drosophila\|1.2e-66" "unique_Noncode_2.0=u349_snRNA_Drosophila\|1.0e-66" -	1053	5,565,618 – 5,565,779	+	13	173	74.77	-2.00	0.44	0.928658
782	dm3.chr2L	5,569,354 – 5,569,490	- - - - - - - -	1054	5,569,354 – 5,569,458	+	9	114	79.38	-1.80	0.51	0.720213
782	dm3.chr2L	5,569,354 – 5,569,490	- - - - - - - -	1055	5,569,378 – 5,569,490	+	10	116	80.88	-1.49	0.59	0.506611
783	dm3.chr2L	5,580,588 – 5,580,721	- - CDS="CDS;ID=CDS_FBgn0031722:3_719;Name=CG14011-cds;Parent=FBtr0079118;parent_type=mRNA" - - - - -	1056	5,580,588 – 5,580,691	+	13	114	67.39	-2.43	0.37	0.994882
				1057	5,580,588 – 5,580,691	-	13	114	67.39	-3.52	0.46	0.999928
				1058	5,580,624 – 5,580,721	+	13	110	62.55	-1.60	0.27	0.757977
				1059	5,580,624 – 5,580,721	-	13	110	62.55	-2.30	0.34	0.995903
784	dm3.chr2L	5,581,603 – 5,581,712	- - - - - - - -	1060	5,581,603 – 5,581,708	+	4	114	79.66	-1.89	0.70	0.857799
				1061	5,581,603 – 5,581,708	-	4	114	79.66	-2.39	0.67	0.958021
				1062	5,581,603 – 5,581,712	+	4	109	82.57	-2.16	0.68	0.877581
				1063	5,581,603 – 5,581,712	-	4	109	82.57	-1.93	0.68	0.756796
785	dm3.chr2L	5,587,620 – 5,587,719	- - CDS="CDS;ID=CDS_FBgn0031723:1_827;Name=CG7251-cds;Parent=FBtr0079117;parent_type=mRNA" - - - - -	1064	5,587,620 – 5,587,719	+	5	102	81.34	-1.45	0.70	0.530492
786	dm3.chr2L	5,612,084 – 5,612,185	- - - intron="intron;ID=intron_FBgn0031725:10_FBgn0031725:9;Name=CG14010-in;Parent=FBtr0302933;parent_type=mRNA" - - - -	1065	5,612,084 – 5,612,185	+	12	113	77.76	-2.10	0.42	0.803068
787	dm3.chr2L	5,619,866 – 5,619,959	- - - - - - - -	1066	5,619,866 – 5,619,959	-	12	107	72.03	-1.53	0.38	0.577627
788	dm3.chr2L	5,631,345 – 5,631,395	- - - intron="intron;ID=intron_FBgn0051646:2_FBgn0051646:1;Name=CG31646-in;Parent=FBtr0079114;parent_type=mRNA" - - - -	1067	5,631,345 – 5,631,395	+	7	55	74.07	-1.26	0.54	0.634572
789	dm3.chr2L	5,633,852 – 5,633,952	- - - intron="intron;ID=intron_FBgn0051646:5_FBgn0051646:4;Name=CG31646-in;Parent=FBtr0079114;parent_type=mRNA" - - - -	1068	5,633,852 – 5,633,952	-	12	121	63.41	-1.34	0.34	0.698288
790	dm3.chr2L	5,640,947 – 5,641,049	FBnoncoding="pre_miRNA;ID=FBtr0304351;Name=mir-959-RM;Parent=FBgn0262256;Alias=CR42963-RM;Dbxref=FlyBase_Annotation_IDs:CR42963-RM,miRBase:MI0005814" - - intron="intron;ID=intron_FBgn0051646:10_FBgn0051646:9;Name=CG31646-in;Parent=FBtr0079114;parent_type=mRNA" - - - "mirBase_v16=dme-mir-959\|1.6e-46"	1069	5,640,947 – 5,641,049	+	9	116	77.53	-1.26	0.84	0.938171
791	dm3.chr2L	5,641,072 – 5,641,170	FBnoncoding="pre_miRNA;ID=FBtr0304489;Name=mir-960-RM;Parent=FBgn0262321;Alias=CR43028-RM;Dbxref=FlyBase_Annotation_IDs:CR43028-RM,miRBase:MI0005815" - - intron="intron;ID=intron_FBgn0051646:10_FBgn0051646:9;Name=CG31646-in;Parent=FBtr0079114;parent_type=mRNA" - - - "mirBase_v16=dme-mir-960\|2.3e-42"	1070	5,641,072 – 5,641,170	+	11	113	62.34	-1.52	0.34	0.894984
792	dm3.chr2L	5,642,114 – 5,642,206	FBnoncoding="pre_miRNA;ID=FBtr0304325;Name=mir-964-RM;Parent=FBgn0262243;Alias=CR42950-RM;Dbxref=FlyBase_Annotation_IDs:CR42950-RM,miRBase:MI0005819" - - intron="intron;ID=intron_FBgn0051646:11_FBgn0051646:10;Name=CG31646-in;Parent=FBtr0079114;parent_type=mRNA" - - - "mirBase_v16=dme-mir-964\|8.8e-45"	1071	5,642,114 – 5,642,206	+	12	95	67.94	-4.45	0.51	0.999984
792	dm3.chr2L	5,642,114 – 5,642,206		1072	5,642,114 – 5,642,206	-	12	95	67.94	-3.59	0.51	0.999960
793	dm3.chr2L	5,651,763 – 5,651,859	- - CDS="CDS;ID=CDS_FBgn0051646:12_829;Name=CG31646-cds;Parent=FBtr0079114;parent_type=mRNA" - - - - -	1073	5,651,763 – 5,651,859	+	7	97	64.18	-1.81	0.40	0.967642
794	dm3.chr2L	5,654,817 – 5,654,875	- - - intron="intron;ID=intron_FBgn0051646:13_FBgn0051646:12;Name=CG31646-in;Parent=FBtr0079114;parent_type=mRNA" - - - -	1074	5,654,817 – 5,654,875	+	5	58	95.52	-2.88	0.99	0.996185
795	dm3.chr2L	5,656,243 – 5,656,345	- - - intron="intron;ID=intron_FBgn0051646:13_FBgn0051646:12;Name=CG31646-in;Parent=FBtr0079114;parent_type=mRNA" - - - -	1075	5,656,243 – 5,656,345	+	9	109	71.41	-2.40	0.36	0.943333
796	dm3.chr2L	5,661,405 – 5,661,522	- - - - - - - -	1076	5,661,405 – 5,661,522	+	6	119	68.71	-1.13	0.44	0.562209
797	dm3.chr2L	5,673,966 – 5,674,067	- - - - - - - -	1077	5,673,966 – 5,674,067	-	6	105	72.91	-1.25	0.57	0.596407
798	dm3.chr2L	5,680,296 – 5,680,424	- - - - - - - -	1078	5,680,296 – 5,680,424	+	5	135	82.24	-2.59	0.64	0.970284
799	dm3.chr2L	5,694,429 – 5,694,523	- - - - - - - -	1079	5,694,429 – 5,694,523	+	12	112	68.83	-1.74	0.33	0.731392
800	dm3.chr2L	5,709,732 – 5,709,823	- - - intron="intron;ID=intron_FBgn0031730:1_FBgn0031730:2;Name=CG7236-in;Parent=FBtr0079133;parent_type=mRNA" - - - -	1080	5,709,732 – 5,709,823	-	8	109	73.20	-1.19	0.59	0.738747
801	dm3.chr2L	5,724,551 – 5,724,658	- - - - - - - -	1081	5,724,551 – 5,724,658	+	5	108	74.35	-1.55	0.52	0.500000
802	dm3.chr2L	5,724,867 – 5,724,982	- - - - - - - -	1082	5,724,867 – 5,724,957	-	7	90	70.85	-1.47	0.43	0.771991
802	dm3.chr2L	5,724,867 – 5,724,982	- - - - - - - -	1083	5,724,886 – 5,724,982	-	7	117	62.50	-1.57	0.41	0.921715
803	dm3.chr2L	5,736,172 – 5,736,290	- - CDS="CDS;ID=CDS_FBgn0031734:7_719;Name=CG11147-cds;Parent=FBtr0079165,FBtr0079166;parent_type=mRNA" - - - - -	1084	5,736,172 – 5,736,290	-	14	131	72.52	-1.11	0.55	0.879036
804	dm3.chr2L	5,757,204 – 5,757,307	- - - - - - - -	1085	5,757,204 – 5,757,304	+	5	101	83.22	-1.47	0.81	0.772117
804	dm3.chr2L	5,757,204 – 5,757,307	- - - - - - - -	1086	5,757,207 – 5,757,307	+	5	101	83.42	-1.62	0.83	0.871847
805	dm3.chr2L	5,771,063 – 5,771,183	- - CDS="CDS;ID=CDS_FBgn0031738:5_791;Name=CG9171-cds;Parent=FBtr0301234,FBtr0301235,FBtr0301236;parent_type=mRNA" - - - - -	1087	5,771,063 – 5,771,183	-	13	120	79.98	-1.38	0.54	0.593113
806	dm3.chr2L	5,773,552 – 5,773,619	- - - intron="intron;ID=intron_FBgn0031738:6_FBgn0031738:5;Name=CG9171-in;Parent=FBtr0301234,FBtr0301235;parent_type=mRNA" - - - -	1088	5,773,552 – 5,773,619	+	11	72	77.37	-1.59	0.56	0.859417
807	dm3.chr2L	5,784,821 – 5,784,920	- - - intron="intron;ID=intron_FBgn0031738:6_FBgn0031738:5;Name=CG9171-in;Parent=FBtr0301234,FBtr0301235;parent_type=mRNA" - - - -	1089	5,784,821 – 5,784,920	+	5	99	89.99	-2.07	0.77	0.763416
808	dm3.chr2L	5,790,368 – 5,790,464	- - - intron="intron;ID=intron_FBgn0031738:8_FBgn0031738:6;Name=CG9171-in;Parent=FBtr0301235;parent_type=mRNA" - - - -	1090	5,790,368 – 5,790,464	-	5	97	69.48	-1.76	0.44	0.849949
809	dm3.chr2L	5,803,458 – 5,803,559	- - CDS="CDS;ID=CDS_FBgn0031740:2_791;Name=CG7239-cds;Parent=FBtr0079139;parent_type=mRNA" - - - - -	1091	5,803,458 – 5,803,559	+	5	103	58.11	-0.66	0.40	0.500000
809	dm3.chr2L	5,803,458 – 5,803,559		1092	5,803,458 – 5,803,559	-	5	103	58.11	-0.67	0.40	0.508739
810	dm3.chr2L	5,821,382 – 5,821,479	- - - - - - - -	1093	5,821,382 – 5,821,479	+	7	103	67.12	-1.37	0.40	0.665749
810	dm3.chr2L	5,821,382 – 5,821,479	- - - - - - - -	1094	5,821,382 – 5,821,479	-	7	103	67.12	-1.51	0.36	0.588372
811	dm3.chr2L	5,853,638 – 5,853,741	- - - intron="intron;ID=intron_FBgn0085410:9_FBgn0085410:10;Name=CG34381-in;Parent=FBtr0112618,FBtr0112619;parent_type=mRNA" - - - -	1095	5,853,638 – 5,853,741	+	8	107	57.17	-1.34	0.29	0.737434
812	dm3.chr2L	5,857,570 – 5,857,670	- - - - - - - -	1096	5,857,570 – 5,857,670	-	6	119	62.31	-1.53	0.31	0.512999
813	dm3.chr2L	5,863,996 – 5,864,138	- - - intron="intron;ID=intron_CG8965:1_CG8965:2;Name=CG8965-in;Parent=FBtr0079158;parent_type=mRNA" - - - -	1097	5,863,996 – 5,864,092	-	3	103	78.41	-2.37	0.57	0.789277
				1098	5,864,029 – 5,864,128	+	5	102	66.40	-1.37	0.40	0.532141
				1099	5,864,029 – 5,864,128	-	5	102	66.40	-2.13	0.41	0.962130
				1100	5,864,041 – 5,864,138	+	5	104	68.57	-2.10	0.60	0.994862
				1101	5,864,041 – 5,864,138	-	5	104	68.57	-1.84	0.54	0.975906
814	dm3.chr2L	5,868,948 – 5,869,051	- - - intron="intron;ID=intron_CG8965:1_CG8965:2;Name=CG8965-in;Parent=FBtr0079158;parent_type=mRNA" - - - -	1102	5,868,948 – 5,869,051	+	5	103	79.73	-2.46	0.57	0.941655
814	dm3.chr2L	5,868,948 – 5,869,051		1103	5,868,948 – 5,869,051	-	5	103	79.73	-2.93	0.48	0.959876
815	dm3.chr2L	5,881,057 – 5,881,161	- - - - - - - -	1104	5,881,057 – 5,881,161	+	12	119	69.29	-1.96	0.39	0.957691
815	dm3.chr2L	5,881,057 – 5,881,161	- - - - - - - -	1105	5,881,057 – 5,881,161	-	12	119	69.29	-2.04	0.34	0.913019
816	dm3.chr2L	5,882,320 – 5,882,458	- - - - - - - -	1106	5,882,320 – 5,882,458	-	6	153	80.55	-2.03	0.64	0.899525
817	dm3.chr2L	5,901,192 – 5,901,294	- - - - - - - -	1107	5,901,192 – 5,901,294	+	7	108	75.19	-1.20	0.63	0.604554
817	dm3.chr2L	5,901,192 – 5,901,294	- - - - - - - -	1108	5,901,192 – 5,901,294	-	7	108	75.19	-1.65	0.59	0.833289
818	dm3.chr2L	5,902,085 – 5,902,182	- - - - - - - -	1109	5,902,085 – 5,902,182	-	6	102	66.24	-2.52	0.26	0.901657
819	dm3.chr2L	5,922,663 – 5,922,754	- - - - - - - -	1110	5,922,663 – 5,922,754	-	4	91	99.45	-1.31	1.00	0.827832
820	dm3.chr2L	5,940,760 – 5,940,850	- - - - - - - -	1111	5,940,760 – 5,940,850	+	5	90	98.44	-2.64	0.98	0.990491
820	dm3.chr2L	5,940,760 – 5,940,850	- - - - - - - -	1112	5,940,760 – 5,940,850	-	5	90	98.44	-3.67	0.99	0.998133
821	dm3.chr2L	5,942,980 – 5,943,100	- - CDS="CDS;ID=CDS_FBgn0261055:1_696;Name=Sfp26Ad-cds;Parent=FBtr0301935;parent_type=mRNA" - - - - -	1113	5,942,980 – 5,943,100	-	5	120	76.32	-1.38	0.59	0.554465
822	dm3.chr2L	5,967,062 – 5,967,162	- - CDS="CDS;ID=CDS_FBgn0031756:2_840;Name=CG13992-cds;Parent=FBtr0079237;parent_type=mRNA" - - - - -	1114	5,967,062 – 5,967,162	+	10	109	58.96	-1.02	0.40	0.865425
822	dm3.chr2L	5,967,062 – 5,967,162		1115	5,967,062 – 5,967,162	-	10	109	58.96	-0.41	0.51	0.839809
823	dm3.chr2L	5,984,003 – 5,984,118	- - CDS="CDS;ID=CDS_CG9075:3_705;Name=eIF-4a-cds;Parent=FBtr0079175;parent_type=mRNA" - - - - -	1116	5,984,003 – 5,984,118	+	15	115	80.61	-1.65	0.51	0.666298
824	dm3.chr2L	5,996,402 – 5,996,503	- - CDS="CDS;ID=CDS_CG9088:2_723;Name=lid-cds;Parent=FBtr0079231,FBtr0079232;parent_type=mRNA" - - - - -	1117	5,996,402 – 5,996,500	+	8	112	67.47	-2.19	0.58	0.998867
				1118	5,996,402 – 5,996,500	-	8	112	67.47	-2.90	0.60	0.999823
				1119	5,996,403 – 5,996,503	+	7	110	73.62	-2.03	0.62	0.991994
				1120	5,996,403 – 5,996,503	-	7	110	73.62	-2.99	0.64	0.999446
825	dm3.chr2L	6,001,979 – 6,002,093	- - - - - - - -	1121	6,001,979 – 6,002,093	+	5	116	64.02	-1.08	0.53	0.931695
826	dm3.chr2L	6,011,211 – 6,011,311	- - - - - - - -	1122	6,011,211 – 6,011,311	+	6	107	81.35	-1.87	0.70	0.901479
827	dm3.chr2L	6,015,140 – 6,015,266	- - - intron="intron;ID=intron_CG11607:1_CG11607:2;Name=H2.0-in;Parent=FBtr0079227;parent_type=mRNA" - - - -	1123	6,015,140 – 6,015,266	+	5	130	74.92	-1.86	0.50	0.782543
828	dm3.chr2L	6,023,425 – 6,023,519	- - - - - - - -	1124	6,023,425 – 6,023,519	+	11	110	72.91	-2.43	0.28	0.617382
829	dm3.chr2L	6,056,194 – 6,056,300	- - - intron="intron;ID=intron_CG13995:1_CG13995:2;Name=CG13995-in;Parent=FBtr0079187;parent_type=mRNA" - - - -	1125	6,056,194 – 6,056,300	-	3	120	88.89	-2.26	0.72	0.681569
830	dm3.chr2L	6,056,511 – 6,056,562	- - - intron="intron;ID=intron_CG13995:1_CG13995:2;Name=CG13995-in;Parent=FBtr0079187;parent_type=mRNA" - - - -	1126	6,056,511 – 6,056,562	+	6	60	72.84	-1.35	0.61	0.822537
831	dm3.chr2L	6,077,105 – 6,077,203	- - - - - - - -	1127	6,077,105 – 6,077,203	-	3	98	97.28	-1.29	0.97	0.732464
832	dm3.chr2L	6,110,641 – 6,110,692	- - - intron="intron;ID=intron_FBgn0051641:3_FBgn0051641:4;Name=stai-in;Parent=FBtr0079197,FBtr0079198;parent_type=mRNA" - - - -	1128	6,110,641 – 6,110,692	+	3	51	100.00	-0.96	1.00	0.603604
833	dm3.chr2L	6,112,443 – 6,112,535	- - - intron="intron;ID=intron_FBgn0051641:3_FBgn0051641:4;Name=stai-in;Parent=FBtr0079197,FBtr0079198;parent_type=mRNA" - - - -	1129	6,112,443 – 6,112,535	-	3	101	85.81	-1.88	0.77	0.698612
834	dm3.chr2L	6,114,148 – 6,114,244	- - - intron="intron;ID=intron_FBgn0051641:4_FBgn0051641:6;Name=stai-in;Parent=FBtr0079197,FBtr0079198;parent_type=mRNA" - - - -	1130	6,114,148 – 6,114,244	-	5	120	76.97	-1.95	0.66	0.908712
835	dm3.chr2L	6,127,633 – 6,127,686	- - CDS="CDS;ID=CDS_FBgn0031782:4_705;Name=WDR79-cds;Parent=FBtr0079210;parent_type=mRNA" - - - - -	1131	6,127,633 – 6,127,686	-	5	53	90.57	-1.46	1.03	0.969697
836	dm3.chr2L	6,133,393 – 6,133,486	- - - - - - - -	1132	6,133,393 – 6,133,486	+	4	93	94.17	-3.06	0.97	0.996609
837	dm3.chr2L	6,133,975 – 6,134,066	- - - - - - - -	1133	6,133,975 – 6,134,066	+	10	104	69.88	-1.26	0.39	0.559023
838	dm3.chr2L	6,135,847 – 6,135,966	- - - - - - - -	1134	6,135,847 – 6,135,950	-	12	120	84.45	-1.37	0.69	0.536690
838	dm3.chr2L	6,135,847 – 6,135,966	- - - - - - - -	1135	6,135,870 – 6,135,966	-	11	114	87.10	-1.47	0.74	0.507239
839	dm3.chr2L	6,136,378 – 6,136,511	- - - - - - - -	1136	6,136,378 – 6,136,511	+	6	156	76.64	-1.86	0.47	0.544555
840	dm3.chr2L	6,145,799 – 6,145,892	- - - - - - - -	1137	6,145,799 – 6,145,892	-	8	100	63.66	-0.71	0.42	0.513284
841	dm3.chr2L	6,150,976 – 6,151,079	- - - - - - - -	1138	6,150,976 – 6,151,079	-	3	103	94.17	-2.23	0.89	0.929687
842	dm3.chr2L	6,156,164 – 6,156,241	- - - - - - - -	1139	6,156,164 – 6,156,241	+	10	78	69.94	-1.81	0.30	0.677273
843	dm3.chr2L	6,156,700 – 6,156,791	- - - - - - - -	1140	6,156,700 – 6,156,791	+	4	93	64.42	-1.92	0.42	0.859688
843	dm3.chr2L	6,156,700 – 6,156,791	- - - - - - - -	1141	6,156,700 – 6,156,791	-	4	93	64.42	-1.56	0.55	0.935313
844	dm3.chr2L	6,171,096 – 6,171,204	- - - - - - - -	1142	6,171,096 – 6,171,204	-	9	114	72.82	-1.65	0.39	0.561471
845	dm3.chr2L	6,172,934 – 6,172,985	- - - - - - - -	1143	6,172,934 – 6,172,985	+	5	51	92.16	-2.08	0.77	0.664660
846	dm3.chr2L	6,178,562 – 6,178,645	- - - - - - - -	1144	6,178,562 – 6,178,645	+	7	86	67.99	-1.12	0.58	0.894095
846	dm3.chr2L	6,178,562 – 6,178,645	- - - - - - - -	1145	6,178,562 – 6,178,645	-	7	86	67.99	-1.85	0.51	0.977605
847	dm3.chr2L	6,181,239 – 6,181,298	- - - intron="intron;ID=intron_FBgn0085409:1_FBgn0085409:2;Name=CG34380-in;Parent=FBtr0112617;parent_type=mRNA" - - - -	1146	6,181,239 – 6,181,298	+	5	61	93.05	-1.96	0.77	0.500000
848	dm3.chr2L	6,186,351 – 6,186,459	- - - intron="intron;ID=intron_FBgn0085409:1_FBgn0085409:2;Name=CG34380-in;Parent=FBtr0112617;parent_type=mRNA" - - - -	1147	6,186,351 – 6,186,459	+	11	115	72.69	-1.87	0.42	0.918719
849	dm3.chr2L	6,187,882 – 6,187,982	- - - intron="intron;ID=intron_FBgn0085409:1_FBgn0085409:2;Name=CG34380-in;Parent=FBtr0112617;parent_type=mRNA" - - - -	1148	6,187,882 – 6,187,982	+	9	102	72.85	-1.26	0.45	0.537218
850	dm3.chr2L	6,197,002 – 6,197,113	- - - intron="intron;ID=intron_FBgn0085409:5_FBgn0085409:6;Name=CG34380-in;Parent=FBtr0112617;parent_type=mRNA" - - - -	1149	6,197,002 – 6,197,113	-	9	119	70.78	-1.08	0.56	0.865768
851	dm3.chr2L	6,213,580 – 6,213,641	- - - - - - - -	1150	6,213,580 – 6,213,641	-	8	67	75.14	-2.47	0.41	0.928391
852	dm3.chr2L	6,217,636 – 6,217,739	- - - - - - - -	1151	6,217,636 – 6,217,739	-	12	119	78.58	-1.02	0.60	0.500000
853	dm3.chr2L	6,218,822 – 6,218,916	- - - - - - - -	1152	6,218,822 – 6,218,916	+	10	120	63.04	-0.73	0.49	0.801247
853	dm3.chr2L	6,218,822 – 6,218,916	- - - - - - - -	1153	6,218,822 – 6,218,916	-	10	120	63.04	-0.53	0.55	0.836479
854	dm3.chr2L	6,220,112 – 6,220,212	- - - - - - - -	1154	6,220,112 – 6,220,212	+	6	100	89.60	-2.24	0.69	0.734049
855	dm3.chr2L	6,222,873 – 6,222,945	- - - - - - - -	1155	6,222,873 – 6,222,945	-	6	72	76.05	-2.25	0.43	0.878052
856	dm3.chr2L	6,230,702 – 6,230,812	- - - - - - - -	1156	6,230,702 – 6,230,812	-	8	114	56.56	-1.24	0.33	0.870258
857	dm3.chr2L	6,233,020 – 6,233,111	- - - - - - - -	1157	6,233,020 – 6,233,111	+	11	108	68.49	-1.59	0.49	0.970112
858	dm3.chr2L	6,238,759 – 6,238,853	- - - - - - - -	1158	6,238,759 – 6,238,853	+	7	104	69.52	-1.76	0.44	0.883918
859	dm3.chr2L	6,244,410 – 6,244,520	- - - - - - - -	1159	6,244,410 – 6,244,520	+	6	116	73.34	-1.62	0.47	0.717800
860	dm3.chr2L	6,246,255 – 6,246,310	- - - - - - - -	1160	6,246,255 – 6,246,310	+	5	55	91.77	-2.39	0.93	0.985081
861	dm3.chr2L	6,255,535 – 6,255,652	- - - intron="intron;ID=intron_FBgn0053531:1_FBgn0053531:2;Name=Ddr-in;Parent=FBtr0091497,FBtr0301305;parent_type=mRNA" - - - -	1161	6,255,535 – 6,255,652	+	5	120	93.82	-1.52	0.89	0.650320
862	dm3.chr2L	6,260,957 – 6,261,057	- - - intron="intron;ID=intron_FBgn0053531:1_FBgn0053531:2;Name=Ddr-in;Parent=FBtr0091497,FBtr0301305;parent_type=mRNA" - - - -	1162	6,260,957 – 6,261,057	-	12	116	78.12	-1.54	0.73	0.957981
863	dm3.chr2L	6,270,534 – 6,270,635	- - - - - - - -	1163	6,270,534 – 6,270,635	+	9	104	76.90	-2.44	0.57	0.989668
863	dm3.chr2L	6,270,534 – 6,270,635	- - - - - - - -	1164	6,270,534 – 6,270,635	-	9	104	76.90	-2.00	0.55	0.941641
864	dm3.chr2L	6,271,674 – 6,271,768	- - - - - - - -	1165	6,271,674 – 6,271,768	-	11	120	83.82	-1.81	0.84	0.943832
865	dm3.chr2L	6,277,737 – 6,277,823	- - - intron="intron;ID=intron_FBgn0053531:2_FBgn0053531:3;Name=Ddr-in;Parent=FBtr0091497,FBtr0301305;parent_type=mRNA" - - - -	1166	6,277,737 – 6,277,823	-	6	87	77.14	-1.76	0.57	0.856919
866	dm3.chr2L	6,278,991 – 6,279,099	- - - intron="intron;ID=intron_FBgn0053531:3_FBgn0053531:4;Name=Ddr-in;Parent=FBtr0091497,FBtr0301305;parent_type=mRNA" - - - -	1167	6,278,991 – 6,279,099	+	6	111	86.83	-2.51	0.94	0.994188
867	dm3.chr2L	6,283,000 – 6,283,120	- - - intron="intron;ID=intron_FBgn0053531:3_FBgn0053531:4;Name=Ddr-in;Parent=FBtr0091497,FBtr0301305;parent_type=mRNA" - - - -	1168	6,283,000 – 6,283,120	+	4	120	92.64	-2.01	0.79	0.628971
868	dm3.chr2L	6,287,236 – 6,287,338	- - - intron="intron;ID=intron_FBgn0053531:3_FBgn0053531:4;Name=Ddr-in;Parent=FBtr0091497,FBtr0301305;parent_type=mRNA" - - - -	1169	6,287,236 – 6,287,334	-	4	98	79.76	-2.51	0.73	0.986212
868	dm3.chr2L	6,287,236 – 6,287,338		1170	6,287,240 – 6,287,338	-	5	98	77.06	-1.82	0.69	0.923909
869	dm3.chr2L	6,302,292 – 6,302,428	- - - intron="intron;ID=intron_FBgn0053531:14_FBgn0053531:15;Name=Ddr-in;Parent=FBtr0091497;parent_type=mRNA" - - - -	1171	6,302,292 – 6,302,407	+	12	120	85.88	-2.83	0.67	0.987159
				1172	6,302,292 – 6,302,407	-	12	120	85.88	-3.05	0.68	0.993631
				1173	6,302,330 – 6,302,428	+	11	112	77.79	-3.07	0.52	0.997310
				1174	6,302,330 – 6,302,428	-	11	112	77.79	-3.16	0.54	0.998293
870	dm3.chr2L	6,304,084 – 6,304,161	- - - intron="intron;ID=intron_FBgn0053531:16_FBgn0053531:17;Name=Ddr-in;Parent=FBtr0091497;parent_type=mRNA" - - - -	1175	6,304,084 – 6,304,161	+	4	81	80.25	-2.52	0.47	0.701315
871	dm3.chr2L	6,325,506 – 6,325,611	- - CDS="CDS;ID=CDS_FBgn0021873:3_786;Name=Gef26-cds;Parent=FBtr0300038,FBtr0300039;parent_type=mRNA" - - - - -	1176	6,325,506 – 6,325,611	-	15	117	77.18	-2.35	0.42	0.935473
872	dm3.chr2L	6,338,685 – 6,338,804	- - - - - - - -	1177	6,338,685 – 6,338,804	-	5	120	79.77	-1.61	0.59	0.523819
873	dm3.chr2L	6,343,158 – 6,343,209	- - - intron="intron;ID=intron_CG11567:3_CG11567:4;Name=Cpr-in;Parent=FBtr0079250;parent_type=mRNA" - - - -	1178	6,343,158 – 6,343,209	+	6	62	64.73	-0.58	0.72	0.858542
874	dm3.chr2L	6,351,659 – 6,351,769	- - - - - - - -	1179	6,351,659 – 6,351,769	+	8	135	59.38	-1.85	0.37	0.975436
874	dm3.chr2L	6,351,659 – 6,351,769	- - - - - - - -	1180	6,351,659 – 6,351,769	-	8	135	59.38	-2.88	0.51	0.999885
875	dm3.chr2L	6,372,294 – 6,372,439	- - - - - - - -	1181	6,372,294 – 6,372,404	-	5	120	85.11	-2.33	0.73	0.931034
875	dm3.chr2L	6,372,294 – 6,372,439	- - - - - - - -	1182	6,372,331 – 6,372,439	-	5	121	74.06	-1.51	0.53	0.500000
876	dm3.chr2L	6,379,179 – 6,379,290	- - CDS="CDS;ID=CDS_FBgn0259714:2_786;Name=CG42368-cds;Parent=FBtr0299967;parent_type=mRNA" - - - - -	1183	6,379,179 – 6,379,290	+	9	116	75.08	-1.21	0.53	0.559201
877	dm3.chr2L	6,379,604 – 6,379,672	- - - intron="intron;ID=intron_FBgn0259714:3_FBgn0259714:2;Name=CG42368-in;Parent=FBtr0299967;parent_type=mRNA" - - - -	1184	6,379,604 – 6,379,672	+	7	76	73.92	-1.93	0.44	0.654206
878	dm3.chr2L	6,393,616 – 6,393,733	- - - intron="intron;ID=intron_FBgn0259714:8_FBgn0259714:7;Name=CG42368-in;Parent=FBtr0299967;parent_type=mRNA" - - - -	1185	6,393,616 – 6,393,733	-	11	143	62.20	-1.11	0.32	0.567031
879	dm3.chr2L	6,395,449 – 6,395,548	- - - intron="intron;ID=intron_FBgn0259714:9_FBgn0259714:8;Name=CG42368-in;Parent=FBtr0299967;parent_type=mRNA" - - - -	1186	6,395,449 – 6,395,548	+	4	113	71.66	-2.24	0.47	0.859603
880	dm3.chr2L	6,397,573 – 6,397,674	- - - intron="intron;ID=intron_FBgn0259714:9_FBgn0259714:8;Name=CG42368-in;Parent=FBtr0299967;parent_type=mRNA" - - - -	1187	6,397,573 – 6,397,674	+	5	120	79.74	-1.80	0.64	0.721591
881	dm3.chr2L	6,410,273 – 6,410,427	- - - intron="intron;ID=intron_FBgn0259714:10_FBgn0259714:9;Name=CG42368-in;Parent=FBtr0299967;parent_type=mRNA" - - - -	1188	6,410,273 – 6,410,387	+	5	120	93.81	-2.70	0.81	0.948001
				1189	6,410,273 – 6,410,387	-	5	120	93.81	-1.28	0.90	0.500000
				1190	6,410,313 – 6,410,427	+	5	120	90.72	-1.74	0.86	0.797465
882	dm3.chr2L	6,412,711 – 6,412,816	- - CDS="CDS;ID=CDS_FBgn0031811:1_780;Name=CG13982-cds;Parent=FBtr0079256;parent_type=mRNA" - - - - -	1191	6,412,711 – 6,412,816	+	8	105	71.58	-1.23	0.54	0.865968
883	dm3.chr2L	6,452,331 – 6,452,488	- - CDS="CDS;ID=CDS_CG9528:2_738;Name=retm-cds;Parent=FBtr0079272;parent_type=mRNA" - - - - -	1192	6,452,331 – 6,452,448	+	13	117	85.45	-2.15	0.59	0.838605
				1193	6,452,331 – 6,452,448	-	13	117	85.45	-2.99	0.70	0.995698
				1194	6,452,371 – 6,452,488	-	13	117	87.18	-2.55	0.62	0.936079
884	dm3.chr2L	6,455,160 – 6,455,237	- - - intron="intron;ID=intron_CG9528:1_CG9528:2;Name=retm-in;Parent=FBtr0079272;parent_type=mRNA" - - - -	1195	6,455,160 – 6,455,237	+	6	87	68.08	-1.69	0.44	0.840608
884	dm3.chr2L	6,455,160 – 6,455,237		1196	6,455,160 – 6,455,237	-	6	87	68.08	-2.48	0.57	0.998059
885	dm3.chr2L	6,459,342 – 6,459,437	- - - - - - - -	1197	6,459,342 – 6,459,437	-	11	112	74.21	-0.60	0.75	0.596918
886	dm3.chr2L	6,472,669 – 6,472,767	- - - - - - - -	1198	6,472,669 – 6,472,767	-	5	112	76.89	-1.58	0.76	0.892026
887	dm3.chr2L	6,478,239 – 6,478,359	- - CDS="CDS;ID=CDS_FBgn0086357:2_835;Name=Sec61alpha-cds;Parent=FBtr0079266;parent_type=mRNA" - - - - -	1199	6,478,239 – 6,478,359	-	15	120	85.69	-1.38	0.69	0.510205
888	dm3.chr2L	6,480,819 – 6,480,885	- - - - - - - -	1200	6,480,819 – 6,480,885	-	6	75	67.05	-2.39	0.40	0.992380
889	dm3.chr2L	6,480,967 – 6,481,084	- - - - - - - -	1201	6,480,967 – 6,481,065	+	5	98	93.37	-2.53	0.79	0.904632
				1202	6,480,967 – 6,481,065	-	5	98	93.37	-4.08	0.88	0.998390
				1203	6,480,988 – 6,481,084	+	5	96	94.06	-2.38	0.81	0.873600
				1204	6,480,988 – 6,481,084	-	5	96	94.06	-2.80	0.82	0.964473
890	dm3.chr2L	6,502,335 – 6,502,463	- - - intron="intron;ID=intron_CG31637:1_CG31637:2;Name=CG31637-in;Parent=FBtr0079287;parent_type=mRNA" - - - -	1205	6,502,335 – 6,502,463	-	9	134	70.81	-2.01	0.30	0.631644
891	dm3.chr2L	6,505,805 – 6,505,903	- - - intron="intron;ID=intron_CG31637:1_CG31637:2;Name=CG31637-in;Parent=FBtr0079287;parent_type=mRNA" - - - -	1206	6,505,805 – 6,505,903	+	3	102	90.40	-1.98	0.78	0.609488
892	dm3.chr2L	6,510,801 – 6,510,853	- - - intron="intron;ID=intron_CG31637:1_CG31637:2;Name=CG31637-in;Parent=FBtr0079287;parent_type=mRNA" - - - -	1207	6,510,801 – 6,510,853	-	4	58	69.70	-0.99	0.67	0.700136
893	dm3.chr2L	6,511,119 – 6,511,222	- - - intron="intron;ID=intron_CG31637:1_CG31637:2;Name=CG31637-in;Parent=FBtr0079287;parent_type=mRNA" - - - -	1208	6,511,119 – 6,511,222	-	8	116	83.20	-1.41	0.80	0.805654
894	dm3.chr2L	6,514,964 – 6,515,058	- - - intron="intron;ID=intron_CG31637:1_CG31637:2;Name=CG31637-in;Parent=FBtr0079287;parent_type=mRNA" - - - -	1209	6,514,964 – 6,515,058	+	6	94	67.10	-0.75	0.63	0.872064
894	dm3.chr2L	6,514,964 – 6,515,058		1210	6,514,964 – 6,515,058	-	6	94	67.10	-1.30	0.56	0.954324
895	dm3.chr2L	6,516,252 – 6,516,358	- - - intron="intron;ID=intron_CG31637:1_CG31637:2;Name=CG31637-in;Parent=FBtr0079287;parent_type=mRNA" - - - -	1211	6,516,252 – 6,516,350	-	6	120	69.32	-1.63	0.45	0.803105
895	dm3.chr2L	6,516,252 – 6,516,358		1212	6,516,262 – 6,516,358	-	6	113	72.12	-1.14	0.54	0.513563
896	dm3.chr2L	6,540,930 – 6,541,044	- - - - - - - -	1213	6,540,930 – 6,541,044	+	12	116	82.27	-1.04	0.77	0.577640
897	dm3.chr2L	6,566,489 – 6,566,541	- - - - - - - -	1214	6,566,489 – 6,566,541	-	5	52	87.50	-2.90	0.67	0.958119
898	dm3.chr2L	6,579,044 – 6,579,249	- - - intron="intron;ID=intron_CG11319:4_CG11319:5;Name=CG11319-in;Parent=FBtr0089641;parent_type=mRNA" - - - -	1215	6,579,044 – 6,579,107	-	4	63	78.47	-0.91	0.93	0.809805
898	dm3.chr2L	6,579,044 – 6,579,249		1216	6,579,107 – 6,579,249	-	5	152	70.17	-2.53	0.32	0.874344
899	dm3.chr2L	6,580,651 – 6,580,746	- - - intron="intron;ID=intron_CG11319:2_CG11319:3;Name=CG11319-in;Parent=FBtr0089641;parent_type=mRNA" - - - -	1217	6,580,651 – 6,580,746	+	8	117	73.90	-1.34	0.58	0.754048
900	dm3.chr2L	6,595,655 – 6,595,764	- - - intron="intron;ID=intron_CG11319:1_CG11319:2;Name=CG11319-in;Parent=FBtr0089641;parent_type=mRNA" - - - -	1218	6,595,655 – 6,595,764	+	7	110	84.04	-2.34	0.49	0.523377
901	dm3.chr2L	6,616,585 – 6,616,676	- - - - - - - -	1219	6,616,585 – 6,616,676	-	6	97	92.62	-2.26	0.75	0.731199
902	dm3.chr2L	6,623,450 – 6,623,574	- - CDS="CDS;ID=CDS_FBgn0085374:2_776;Name=CG34345-cds;Parent=FBtr0112553;parent_type=mRNA" - - - - -	1220	6,623,450 – 6,623,574	-	9	125	61.82	-1.25	0.31	0.590780
903	dm3.chr2L	6,637,593 – 6,637,671	- - - intron="intron;ID=intron_FBgn0051635:4_FBgn0051635:3;Name=CG31635-in;Parent=FBtr0113410;parent_type=mRNA" - - - -	1221	6,637,593 – 6,637,671	-	7	81	71.62	-1.16	0.48	0.578857
904	dm3.chr2L	6,643,813 – 6,643,930	- - - intron="intron;ID=intron_FBgn0051635:8_FBgn0051635:7;Name=CG31635-in;Parent=FBtr0079326,FBtr0113410;parent_type=mRNA" - - - -	1222	6,643,813 – 6,643,930	+	5	118	71.95	-1.42	0.62	0.908020
905	dm3.chr2L	6,653,683 – 6,653,786	- - CDS="CDS;ID=CDS_FBgn0031842:8_841;Name=Tango1-cds;Parent=FBtr0079295;parent_type=mRNA" - - - - -	1223	6,653,683 – 6,653,786	+	13	118	74.23	-1.41	0.44	0.526993
906	dm3.chr2L	6,684,005 – 6,684,057	- - - - - - - -	1224	6,684,005 – 6,684,057	+	6	58	68.23	-0.92	0.57	0.615291
907	dm3.chr2L	6,685,508 – 6,685,608	- - CDS="CDS;ID=CDS_FBgn0031849:2_722;Name=CG11327-cds;Parent=FBtr0079316;parent_type=mRNA" - - - - -	1225	6,685,508 – 6,685,608	+	6	115	69.14	-1.08	0.50	0.546301
908	dm3.chr2L	6,698,404 – 6,698,505	- - - intron="intron;ID=intron_FBgn0031850:11_FBgn0031850:10;Name=Tsp-in;Parent=FBtr0079311,FBtr0079312,FBtr0079313,FBtr0079314,FBtr0114488;parent_type=mRNA" - - - -	1226	6,698,404 – 6,698,505	-	7	108	84.25	-1.95	0.67	0.787966
909	dm3.chr2L	6,713,166 – 6,713,276	- - - - - - - -	1227	6,713,166 – 6,713,276	-	11	114	67.39	-0.97	0.45	0.749451
910	dm3.chr2L	6,722,632 – 6,722,744	- - - intron="intron;ID=intron_FBgn0025777:9_FBgn0025777:8;Name=homer-in;Parent=FBtr0079307;parent_type=mRNA" - - - -	1228	6,722,632 – 6,722,744	-	5	118	70.26	-1.39	0.51	0.690920
911	dm3.chr2L	6,741,992 – 6,742,085	- - - - - - - -	1229	6,741,992 – 6,742,085	-	5	108	69.64	-1.03	0.59	0.638093
912	dm3.chr2L	6,745,620 – 6,745,761	- - - - - - - -	1230	6,745,620 – 6,745,761	+	6	144	74.10	-1.75	0.51	0.813986
913	dm3.chr2L	6,746,761 – 6,746,890	- - - - - - - -	1231	6,746,761 – 6,746,873	+	5	114	85.71	-2.56	0.78	0.979623
913	dm3.chr2L	6,746,761 – 6,746,890	- - - - - - - -	1232	6,746,800 – 6,746,890	-	5	93	79.00	-1.54	0.61	0.598045
914	dm3.chr2L	6,766,938 – 6,767,090	- - - - - - - -	1233	6,766,938 – 6,767,053	+	12	119	78.63	-2.12	0.52	0.950264
				1234	6,766,938 – 6,767,053	-	12	119	78.63	-2.71	0.52	0.993045
				1235	6,766,978 – 6,767,090	+	12	115	66.68	-0.56	0.48	0.743816
				1236	6,766,978 – 6,767,090	-	12	115	66.68	-0.46	0.45	0.513458
915	dm3.chr2L	6,769,229 – 6,769,327	- - - intron="intron;ID=intron_FBgn0031857:12_FBgn0031857:11;Name=CG11321-in;Parent=FBtr0079386;parent_type=mRNA" - - - -	1237	6,769,229 – 6,769,327	+	3	98	67.27	-4.16	0.64	0.999792
915	dm3.chr2L	6,769,229 – 6,769,327		1238	6,769,229 – 6,769,327	-	3	98	67.27	-5.57	0.66	0.999866
916	dm3.chr2L	6,771,740 – 6,771,831	- - - - - - - -	1239	6,771,740 – 6,771,831	+	7	98	57.89	-0.96	0.35	0.729445
916	dm3.chr2L	6,771,740 – 6,771,831	- - - - - - - -	1240	6,771,740 – 6,771,831	-	7	98	57.89	-0.83	0.41	0.865669
917	dm3.chr2L	6,773,773 – 6,773,831	- - - - - - - -	1241	6,773,773 – 6,773,831	+	9	67	69.46	-0.35	0.69	0.627954
917	dm3.chr2L	6,773,773 – 6,773,831	- - - - - - - -	1242	6,773,773 – 6,773,831	-	9	67	69.46	-0.63	0.60	0.631252
918	dm3.chr2L	6,781,207 – 6,781,277	- - - intron="intron;ID=intron_FBgn0015776:4_FBgn0015776:3;Name=nrv1-in;Parent=FBtr0079384;parent_type=mRNA" - - - -	1243	6,781,207 – 6,781,277	+	3	70	99.05	-1.99	0.88	0.718016
918	dm3.chr2L	6,781,207 – 6,781,277		1244	6,781,207 – 6,781,277	-	3	70	99.05	-1.21	0.95	0.509963
919	dm3.chr2L	6,783,522 – 6,783,652	- - - intron="intron;ID=intron_FBgn0015776:4_FBgn0015776:3;Name=nrv1-in;Parent=FBtr0079384;parent_type=mRNA" - - - -	1245	6,783,522 – 6,783,615	+	11	122	63.21	-1.42	0.32	0.568555
919	dm3.chr2L	6,783,522 – 6,783,652		1246	6,783,550 – 6,783,652	+	10	118	72.14	-1.43	0.42	0.606166
920	dm3.chr2L	6,784,017 – 6,784,116	- - - intron="intron;ID=intron_FBgn0015776:4_FBgn0015776:3;Name=nrv1-in;Parent=FBtr0079384;parent_type=mRNA" - - - -	1247	6,784,017 – 6,784,116	+	8	118	73.58	-2.17	0.39	0.763936
921	dm3.chr2L	6,784,453 – 6,784,561	- - - intron="intron;ID=intron_FBgn0015776:4_FBgn0015776:3;Name=nrv1-in;Parent=FBtr0079384;parent_type=mRNA" - - - -	1248	6,784,453 – 6,784,561	+	6	109	85.97	-1.15	0.87	0.650543
922	dm3.chr2L	6,784,601 – 6,784,691	- - - intron="intron;ID=intron_FBgn0015776:4_FBgn0015776:3;Name=nrv1-in;Parent=FBtr0079384;parent_type=mRNA" - - - -	1249	6,784,601 – 6,784,691	-	5	90	94.22	-0.88	0.97	0.550767
923	dm3.chr2L	6,799,737 – 6,799,817	FBnoncoding="tRNA;ID=FBtr0079338;Name=tRNA:CR31631-RA;Parent=FBgn0051631;Alias=CR31631-RA;Dbxref=FlyBase_Annotation_IDs:CR31631-RA;score_text=Weakly" tRNAscann="Arg_chr2L_trna9" - - "Rfam_10.0=RF00005;tRNA;AASV01033824.1/1067-1139\|1.4e-33" "Noncode_2.0=n190285_u187588_AK030470_mRNAlike\|2.0e-29" "unique_Noncode_2.0=u187588_mRNAlike\|1.8e-29" -	1250	6,799,737 – 6,799,817	+	13	95	71.06	-1.20	0.93	0.984489
923	dm3.chr2L	6,799,737 – 6,799,817		1251	6,799,737 – 6,799,817	-	13	95	71.06	-1.97	0.81	0.998274
924	dm3.chr2L	6,805,285 – 6,805,405	- - - - - - - -	1252	6,805,285 – 6,805,405	+	6	120	73.32	-1.50	0.75	0.970392
925	dm3.chr2L	6,807,764 – 6,807,863	- - - - - - - -	1253	6,807,764 – 6,807,863	-	5	99	97.78	-1.90	0.90	0.795508
926	dm3.chr2L	6,810,697 – 6,810,748	- - - - - - - -	1254	6,810,697 – 6,810,748	+	9	65	70.72	-1.24	0.61	0.880658
927	dm3.chr2L	6,813,438 – 6,813,522	- - - - - - - -	1255	6,813,438 – 6,813,522	+	11	84	96.90	-3.89	0.91	0.997701
927	dm3.chr2L	6,813,438 – 6,813,522	- - - - - - - -	1256	6,813,438 – 6,813,522	-	11	84	96.90	-1.42	0.98	0.863847
928	dm3.chr2L	6,813,626 – 6,813,719	- - - - - - - -	1257	6,813,626 – 6,813,719	-	8	103	71.07	-2.27	0.34	0.914964
929	dm3.chr2L	6,815,617 – 6,815,745	- - - - - - - -	1258	6,815,617 – 6,815,745	-	10	143	73.38	-2.18	0.33	0.781629
930	dm3.chr2L	6,821,640 – 6,821,730	- - - - - - - -	1259	6,821,640 – 6,821,730	+	11	116	73.17	-1.91	0.46	0.854063
931	dm3.chr2L	6,824,119 – 6,824,213	- - - intron="intron;ID=intron_CG31632:1_CG31632:2;Name=sens-2-in;Parent=FBtr0079341;parent_type=mRNA" - - - -	1260	6,824,119 – 6,824,213	+	12	116	74.42	-1.68	0.45	0.644860
932	dm3.chr2L	6,830,189 – 6,830,305	- - - intron="intron;ID=intron_CG31632:1_CG31632:2;Name=sens-2-in;Parent=FBtr0079341;parent_type=mRNA" - - - -	1261	6,830,189 – 6,830,305	+	12	118	86.21	-2.40	0.93	0.993268
933	dm3.chr2L	6,851,951 – 6,852,115	- - - - - - - -	1262	6,851,951 – 6,852,071	+	5	120	74.20	-2.26	0.62	0.988238
				1263	6,851,951 – 6,852,071	-	5	120	74.20	-1.70	0.57	0.870533
				1264	6,851,991 – 6,852,111	+	5	120	75.74	-1.43	0.67	0.826103
				1265	6,851,996 – 6,852,115	+	5	120	73.41	-1.18	0.58	0.548077
934	dm3.chr2L	6,854,116 – 6,854,230	- - - - - - - -	1266	6,854,116 – 6,854,230	+	6	115	70.45	-0.87	0.53	0.541229
935	dm3.chr2L	6,862,378 – 6,862,562	- - CDS="CDS;ID=CDS_CG10806:6_755;Name=Nha1-cds;Parent=FBtr0079374;parent_type=mRNA" - - - - -	1267	6,862,378 – 6,862,473	-	14	120	74.70	-1.00	0.61	0.681002
				1268	6,862,393 – 6,862,513	-	14	120	80.03	-1.44	0.51	0.583680
				1269	6,862,443 – 6,862,562	+	14	119	77.17	-1.70	0.38	0.515598
				1270	6,862,443 – 6,862,562	-	14	119	77.17	-1.71	0.44	0.792130
936	dm3.chr2L	6,867,671 – 6,867,764	- - - intron="intron;ID=intron_CG10806:1_CG10806:2;Name=Nha1-in;Parent=FBtr0079374;parent_type=mRNA" - - - -	1271	6,867,671 – 6,867,762	+	7	116	60.43	-1.59	0.39	0.913429
				1272	6,867,671 – 6,867,762	-	7	116	60.43	-1.69	0.34	0.831587
				1273	6,867,673 – 6,867,764	+	7	115	59.69	-1.43	0.37	0.819401
				1274	6,867,673 – 6,867,764	-	7	115	59.69	-1.49	0.34	0.738115
937	dm3.chr2L	6,871,126 – 6,871,226	- - - - - - - -	1275	6,871,126 – 6,871,226	+	7	100	61.55	-3.40	0.23	0.996451
938	dm3.chr2L	6,871,638 – 6,871,778	- - - - - - - -	1276	6,871,638 – 6,871,778	-	7	142	78.52	-1.81	0.55	0.839679
939	dm3.chr2L	6,876,279 – 6,876,427	- - - - - - - -	1277	6,876,279 – 6,876,427	-	5	148	73.38	-2.27	0.37	0.668261
940	dm3.chr2L	6,886,298 – 6,886,419	- - - - - - - -	1278	6,886,298 – 6,886,419	+	6	135	74.99	-1.99	0.51	0.877962
941	dm3.chr2L	6,913,702 – 6,913,802	- - CDS="CDS;ID=CDS_CG4488:1_705;Name=wee-cds;Parent=FBtr0079371;parent_type=mRNA" - - - - -	1279	6,913,702 – 6,913,802	+	7	101	68.26	-0.87	0.50	0.749042
942	dm3.chr2L	6,918,572 – 6,918,685	- - - - - - - -	1280	6,918,572 – 6,918,685	-	10	122	64.66	-1.72	0.28	0.660400
943	dm3.chr2L	6,920,716 – 6,920,856	- - - - - - - -	1281	6,920,716 – 6,920,856	+	12	142	97.18	-2.30	0.94	0.968118
944	dm3.chr2L	6,921,119 – 6,921,170	- - - intron="intron;ID=intron_FBgn0004838:1_FBgn0004838:5;Name=Hrb27C-in;Parent=FBtr0079346;parent_type=mRNA" - - - -	1282	6,921,119 – 6,921,170	+	6	51	88.50	-1.74	0.74	0.576127
944	dm3.chr2L	6,921,119 – 6,921,170		1283	6,921,119 – 6,921,170	-	6	51	88.50	-2.34	0.84	0.973703
945	dm3.chr2L	6,940,731 – 6,940,816	- - CDS="CDS;ID=CDS_FBgn0031869:17_870;Name=CG18304-cds;Parent=FBtr0079367,FBtr0306285;parent_type=mRNA" - - - - -	1284	6,940,731 – 6,940,816	-	13	87	79.56	-1.74	0.45	0.599583
946	dm3.chr2L	6,948,800 – 6,948,916	- - - - - - - -	1285	6,948,800 – 6,948,916	+	7	118	63.80	-2.05	0.32	0.963507
947	dm3.chr2L	6,951,746 – 6,951,858	- - CDS="CDS;ID=CDS_CG3423:5_706;Name=SA-cds;Parent=FBtr0079349;parent_type=mRNA" - - - - -	1286	6,951,746 – 6,951,858	+	14	112	82.19	-1.80	0.56	0.744119
948	dm3.chr2L	6,956,300 – 6,956,480	- - - intron="intron;ID=intron_CG13775:1_CG13775:2;Name=CG13775-in;Parent=FBtr0079363;parent_type=mRNA" - - - -	1287	6,956,300 – 6,956,405	+	3	105	85.58	-2.82	0.58	0.817822
				1288	6,956,340 – 6,956,445	+	5	120	70.16	-1.47	0.47	0.657561
				1289	6,956,340 – 6,956,445	-	5	120	70.16	-1.81	0.49	0.911529
				1290	6,956,366 – 6,956,480	-	5	115	75.44	-1.25	0.64	0.681483
949	dm3.chr2L	6,983,289 – 6,983,547	- - CDS="CDS;ID=CDS_FBgn0031879:10_696;Name=uif-cds;Parent=FBtr0079354,FBtr0290119,FBtr0302162;parent_type=mRNA" - - - - -	1291	6,983,289 – 6,983,401	+	15	117	72.80	-1.08	0.40	0.509953
				1292	6,983,289 – 6,983,401	-	15	117	72.80	-0.99	0.42	0.529363
				1293	6,983,321 – 6,983,441	+	15	120	84.63	-2.71	0.56	0.978204
				1294	6,983,441 – 6,983,547	-	15	113	67.01	-0.60	0.44	0.685030
950	dm3.chr2L	6,999,791 – 6,999,903	- - - - - - - -	1295	6,999,791 – 6,999,903	+	12	118	77.92	-1.24	0.56	0.556048
951	dm3.chr2L	7,006,895 – 7,006,994	- - - intron="intron;ID=intron_FBgn0031879:14_FBgn0031879:13;Name=uif-in;Parent=FBtr0079354,FBtr0290119,FBtr0302162;parent_type=mRNA" - - - -	1296	7,006,895 – 7,006,994	-	8	107	66.15	-1.14	0.38	0.589641
952	dm3.chr2L	7,010,367 – 7,010,502	- - - - - - - -	1297	7,010,367 – 7,010,469	-	5	105	84.93	-3.22	0.76	0.995970
952	dm3.chr2L	7,010,367 – 7,010,502	- - - - - - - -	1298	7,010,405 – 7,010,502	-	8	102	63.42	-2.48	0.44	0.998210
953	dm3.chr2L	7,021,421 – 7,021,515	- - - intron="intron;ID=intron_CG31628:1_CG31628:2;Name=ade3-in;Parent=FBtr0079431,FBtr0100353;parent_type=mRNA" - - - -	1299	7,021,421 – 7,021,515	-	5	96	98.31	-1.89	0.92	0.840196
954	dm3.chr2L	7,035,000 – 7,035,094	- - - intron="intron;ID=intron_CG11266:11_CG11266:3;Name=CG11266-in;Parent=FBtr0089637;parent_type=mRNA" - - - -	1300	7,035,000 – 7,035,094	+	13	115	77.85	-2.28	0.73	0.995308
954	dm3.chr2L	7,035,000 – 7,035,094		1301	7,035,000 – 7,035,094	-	13	115	77.85	-1.77	0.50	0.770314
955	dm3.chr2L	7,081,571 – 7,081,674	- - - intron="intron;ID=intron_CG13780:2_CG13780:3;Name=Pvf2-in;Parent=FBtr0079423;parent_type=mRNA" - - - -	1302	7,081,571 – 7,081,674	-	6	115	68.00	-1.73	0.34	0.598912
956	dm3.chr2L	7,083,228 – 7,083,284	- - CDS="CDS;ID=CDS_CG13780:2_719;Name=Pvf2-cds;Parent=FBtr0079423;parent_type=mRNA" - - - - -	1303	7,083,228 – 7,083,284	+	6	58	76.47	-1.46	0.57	0.699265
956	dm3.chr2L	7,083,228 – 7,083,284		1304	7,083,228 – 7,083,284	-	6	58	76.47	-1.30	0.56	0.514748
957	dm3.chr2L	7,089,325 – 7,089,421	- - - - - - - -	1305	7,089,325 – 7,089,421	-	5	97	92.80	-2.76	0.63	0.688212
958	dm3.chr2L	7,118,349 – 7,118,404	- - - intron="intron;ID=intron_FBgn0085407:5_FBgn0085407:4;Name=Pvf3-in;Parent=FBtr0112611,FBtr0112612;parent_type=mRNA" - - - -	1306	7,118,349 – 7,118,404	+	9	55	89.63	-3.16	0.63	0.972110
958	dm3.chr2L	7,118,349 – 7,118,404		1307	7,118,349 – 7,118,404	-	9	55	89.63	-1.78	0.75	0.607905
959	dm3.chr2L	7,119,810 – 7,119,932	- - - intron="intron;ID=intron_FBgn0085407:6_FBgn0085407:5;Name=Pvf3-in;Parent=FBtr0112612;parent_type=mRNA" - - - -	1308	7,119,810 – 7,119,916	+	4	111	73.27	-1.53	0.60	0.749673
959	dm3.chr2L	7,119,810 – 7,119,932		1309	7,119,834 – 7,119,932	+	4	102	75.50	-1.96	0.65	0.934602
960	dm3.chr2L	7,125,468 – 7,125,560	- - - intron="intron;ID=intron_FBgn0085407:6_FBgn0085407:5;Name=Pvf3-in;Parent=FBtr0112612;parent_type=mRNA" - - - -	1310	7,125,468 – 7,125,560	+	9	114	61.03	-1.39	0.33	0.728606
961	dm3.chr2L	7,129,843 – 7,129,897	- - - intron="intron;ID=intron_FBgn0085407:6_FBgn0085407:5;Name=Pvf3-in;Parent=FBtr0112612;parent_type=mRNA" - - - -	1311	7,129,843 – 7,129,897	-	6	70	58.65	-1.40	0.44	0.967225
962	dm3.chr2L	7,135,469 – 7,135,563	- - - - - - - -	1312	7,135,469 – 7,135,563	+	4	114	83.82	-1.84	0.73	0.738306
963	dm3.chr2L	7,142,408 – 7,142,501	- - - - - - - -	1313	7,142,408 – 7,142,501	+	7	99	65.49	-1.33	0.45	0.935930
963	dm3.chr2L	7,142,408 – 7,142,501	- - - - - - - -	1314	7,142,408 – 7,142,501	-	7	99	65.49	-1.52	0.33	0.680951
964	dm3.chr2L	7,150,796 – 7,150,894	- - - - - - - -	1315	7,150,796 – 7,150,894	-	6	110	69.64	-1.23	0.45	0.527590
965	dm3.chr2L	7,151,959 – 7,152,054	- - - - - - - -	1316	7,151,959 – 7,152,054	-	4	120	71.69	-2.12	0.57	0.970570
966	dm3.chr2L	7,155,149 – 7,155,245	- - - - - - - -	1317	7,155,149 – 7,155,245	-	7	113	72.19	-1.87	0.39	0.769458
967	dm3.chr2L	7,162,999 – 7,163,053	- - - - - - - -	1318	7,162,999 – 7,163,053	+	9	70	79.93	-1.48	0.66	0.607680
967	dm3.chr2L	7,162,999 – 7,163,053	- - - - - - - -	1319	7,162,999 – 7,163,053	-	9	70	79.93	-1.41	0.82	0.887550
968	dm3.chr2L	7,168,526 – 7,168,619	- - - - - - - -	1320	7,168,526 – 7,168,619	-	9	101	73.41	-0.80	0.61	0.619476
969	dm3.chr2L	7,169,226 – 7,169,404	- - - - - - - -	1321	7,169,226 – 7,169,335	-	11	119	82.82	-2.03	0.56	0.809527
				1322	7,169,258 – 7,169,374	+	8	117	92.39	-1.78	0.83	0.710720
				1323	7,169,258 – 7,169,374	-	8	117	92.39	-2.68	0.90	0.989379
				1324	7,169,298 – 7,169,404	-	8	113	77.83	-1.13	0.72	0.679392
970	dm3.chr2L	7,187,038 – 7,187,128	- - CDS="CDS;ID=CDS_CG4496:2_708;Name=CG4496-cds;Parent=FBtr0079419;parent_type=mRNA" - - - - -	1325	7,187,038 – 7,187,128	-	6	96	67.22	-1.48	0.39	0.755765
971	dm3.chr2L	7,198,539 – 7,198,643	- - - intron="intron;ID=intron_CG4502:1_CG4502:7;Name=CG4502-in;Parent=FBtr0079417;parent_type=mRNA" - - - -	1326	7,198,539 – 7,198,643	+	8	119	59.46	-2.03	0.30	0.961311
971	dm3.chr2L	7,198,539 – 7,198,643		1327	7,198,539 – 7,198,643	-	8	119	59.46	-0.92	0.39	0.731928
972	dm3.chr2L	7,206,306 – 7,206,382	- - - - - - - -	1328	7,206,306 – 7,206,382	-	13	79	76.64	-1.27	0.48	0.586341
973	dm3.chr2L	7,208,215 – 7,208,311	- - CDS="CDS;ID=CDS_FBgn0031897:2_761;Name=CG13784-cds;Parent=FBtr0110799;parent_type=mRNA" - - - - -	1329	7,208,215 – 7,208,311	+	14	97	86.56	-2.29	0.56	0.804681
974	dm3.chr2L	7,210,458 – 7,210,568	- - - intron="intron;ID=intron_FBgn0031897:7_FBgn0031897:5;Name=CG13784-in;Parent=FBtr0110799;parent_type=mRNA" - - - -	1330	7,210,458 – 7,210,555	+	7	110	75.13	-2.97	0.33	0.932384
				1331	7,210,458 – 7,210,555	-	7	110	75.13	-3.33	0.30	0.961159
				1332	7,210,466 – 7,210,568	+	6	115	80.52	-2.95	0.64	0.993987
				1333	7,210,466 – 7,210,568	-	6	115	80.52	-3.58	0.59	0.998206
975	dm3.chr2L	7,220,616 – 7,220,715	- - - - - - - -	1334	7,220,616 – 7,220,715	+	11	113	66.09	-1.36	0.38	0.827754
976	dm3.chr2L	7,243,569 – 7,243,630	- - - - - - - -	1335	7,243,569 – 7,243,630	+	8	68	81.72	-0.98	0.81	0.544319
976	dm3.chr2L	7,243,569 – 7,243,630	- - - - - - - -	1336	7,243,569 – 7,243,630	-	8	68	81.72	-1.23	0.83	0.786507
977	dm3.chr2L	7,262,866 – 7,262,961	- - - - - - - -	1337	7,262,866 – 7,262,961	+	5	100	94.02	-2.32	0.79	0.803652
978	dm3.chr2L	7,263,105 – 7,263,232	- - - - - - - -	1338	7,263,105 – 7,263,232	-	6	127	81.03	-1.21	0.77	0.625255
979	dm3.chr2L	7,275,878 – 7,275,980	- - CDS="CDS;ID=CDS_CG4698:1_705;Name=Wnt4-cds;Parent=FBtr0089291;parent_type=mRNA" - - - - -	1339	7,275,878 – 7,275,980	+	8	105	76.77	-1.16	0.63	0.564922
980	dm3.chr2L	7,288,417 – 7,288,509	- - - - - - - -	1340	7,288,417 – 7,288,509	+	8	104	76.75	-1.89	0.45	0.519756
981	dm3.chr2L	7,300,551 – 7,300,654	- - - - - - - -	1341	7,300,551 – 7,300,654	-	9	116	76.27	-1.68	0.46	0.552938
982	dm3.chr2L	7,301,920 – 7,302,014	- - - - - - - -	1342	7,301,920 – 7,302,014	+	12	115	72.24	-2.43	0.34	0.905057
983	dm3.chr2L	7,324,456 – 7,324,549	- - - - - - - -	1343	7,324,456 – 7,324,549	+	8	108	86.58	-1.69	0.72	0.526902
984	dm3.chr2L	7,337,564 – 7,337,670	- - - intron="intron;ID=intron_FBgn0031902:1_FBgn0031902:2;Name=Wnt6-in;Parent=FBtr0303251;parent_type=mRNA" - - - -	1344	7,337,564 – 7,337,670	-	10	108	70.16	-0.99	0.48	0.588202
985	dm3.chr2L	7,339,670 – 7,339,776	- - - intron="intron;ID=intron_FBgn0031902:1_FBgn0031902:2;Name=Wnt6-in;Parent=FBtr0303251;parent_type=mRNA" - - - -	1345	7,339,670 – 7,339,776	-	10	122	77.33	-2.03	0.43	0.591270
986	dm3.chr2L	7,353,922 – 7,354,054	- - - - - - - -	1346	7,353,922 – 7,354,018	+	11	96	96.82	-1.28	0.94	0.614530
986	dm3.chr2L	7,353,922 – 7,354,054	- - - - - - - -	1347	7,353,934 – 7,354,054	+	12	120	96.46	-1.45	0.93	0.716622
987	dm3.chr2L	7,356,439 – 7,356,535	- - - - - - - -	1348	7,356,439 – 7,356,535	+	6	100	84.78	-2.39	0.68	0.939394
988	dm3.chr2L	7,366,447 – 7,366,542	- - - intron="intron;ID=intron_FBgn0031903:1_FBgn0031903:2;Name=Wnt10-in;Parent=FBtr0303207;parent_type=mRNA" - - - -	1349	7,366,447 – 7,366,542	+	7	114	78.80	-1.44	0.73	0.807530
989	dm3.chr2L	7,370,568 – 7,370,658	- - - intron="intron;ID=intron_FBgn0031903:3_FBgn0031903:4;Name=Wnt10-in;Parent=FBtr0303207;parent_type=mRNA" - - - -	1350	7,370,568 – 7,370,658	-	7	107	69.68	-1.63	0.50	0.940593
990	dm3.chr2L	7,370,715 – 7,370,771	- - - intron="intron;ID=intron_FBgn0031903:3_FBgn0031903:4;Name=Wnt10-in;Parent=FBtr0303207;parent_type=mRNA" - - - -	1351	7,370,715 – 7,370,771	+	12	59	84.05	-2.33	0.51	0.838560
990	dm3.chr2L	7,370,715 – 7,370,771		1352	7,370,715 – 7,370,771	-	12	59	84.05	-2.29	0.57	0.914769
991	dm3.chr2L	7,373,439 – 7,373,540	- - - intron="intron;ID=intron_FBgn0031903:3_FBgn0031903:4;Name=Wnt10-in;Parent=FBtr0303207;parent_type=mRNA" - - - -	1353	7,373,439 – 7,373,540	+	6	115	82.71	-2.66	0.64	0.969715
991	dm3.chr2L	7,373,439 – 7,373,540		1354	7,373,439 – 7,373,540	-	6	115	82.71	-5.07	0.71	0.999699
992	dm3.chr2L	7,374,267 – 7,374,391	- - - intron="intron;ID=intron_FBgn0031903:3_FBgn0031903:4;Name=Wnt10-in;Parent=FBtr0303207;parent_type=mRNA" - - - -	1355	7,374,267 – 7,374,362	-	12	110	85.25	-2.90	0.45	0.831113
				1356	7,374,301 – 7,374,391	+	10	101	82.30	-2.35	0.54	0.833099
				1357	7,374,301 – 7,374,391	-	10	101	82.30	-3.09	0.59	0.991221
993	dm3.chr2L	7,388,284 – 7,388,381	- - - - - - - -	1358	7,388,284 – 7,388,381	-	6	98	61.44	-2.72	0.40	0.999275
994	dm3.chr2L	7,401,916 – 7,402,047	- - - intron="intron;ID=intron_FBgn0031907:2_FBgn0031907:6;Name=CG5171-in;Parent=FBtr0302587;parent_type=mRNA" - - - -	1359	7,401,916 – 7,402,047	-	8	151	75.21	-1.54	0.59	0.808711
995	dm3.chr2L	7,402,268 – 7,402,368	- - - intron="intron;ID=intron_FBgn0031907:2_FBgn0031907:6;Name=CG5171-in;Parent=FBtr0302587;parent_type=mRNA" - - - -	1360	7,402,268 – 7,402,368	-	4	100	95.33	-1.94	0.91	0.889138
996	dm3.chr2L	7,416,203 – 7,416,295	- - - intron="intron;ID=intron_CG5229:4_CG5229:5;Name=chm-in;Parent=FBtr0079443;parent_type=mRNA" - - - -	1361	7,416,203 – 7,416,295	+	5	98	92.99	-1.07	0.93	0.524607
997	dm3.chr2L	7,420,304 – 7,420,394	- - - intron="intron;ID=intron_CG5229:5_CG5229:6;Name=chm-in;Parent=FBtr0079443;parent_type=mRNA" - - - -	1362	7,420,304 – 7,420,394	+	5	90	89.33	-1.24	0.87	0.536000
998	dm3.chr2L	7,425,800 – 7,425,876	FBnoncoding="pre_miRNA;ID=FBtr0304472;Name=mir-275-RM;Parent=FBgn0262453;Alias=CR43020-RM;Dbxref=FlyBase_Annotation_IDs:CR43020-RM,miRBase:MI0000356" - - - "Rfam_10.0=RF00757;mir-275;AAKO01000986.1/85073-85163\|3.2e-34" "Noncode_2.0=n178702_u177800_NW_045834_miRNA_Anopheles\|2.3e-07" "unique_Noncode_2.0=u177800_miRNA_Anopheles\|2.0e-07" "mirBase_v16=dya-mir-275\|2.6e-38"	1363	7,425,800 – 7,425,876	+	15	82	78.75	-3.21	0.75	0.999527
998	dm3.chr2L	7,425,800 – 7,425,876		1364	7,425,800 – 7,425,876	-	15	82	78.75	-2.30	0.71	0.996786
999	dm3.chr2L	7,432,396 – 7,432,501	- - - intron="intron;ID=intron_CG5958:2_CG5958:3;Name=CG5958-in;Parent=FBtr0079466;parent_type=mRNA" - - - -	1365	7,432,396 – 7,432,501	+	8	111	70.75	-1.95	0.38	0.847892
1000	dm3.chr2L	7,436,362 – 7,436,415	- - - - - - - -	1366	7,436,362 – 7,436,415	+	3	59	82.46	-2.27	0.95	0.990863
1001	dm3.chr2L	7,451,824 – 7,451,876	- - - - - - - -	1367	7,451,824 – 7,451,876	+	7	63	74.39	-1.03	0.62	0.559525
1001	dm3.chr2L	7,451,824 – 7,451,876	- - - - - - - -	1368	7,451,824 – 7,451,876	-	7	63	74.39	-1.30	0.66	0.853419
1002	dm3.chr2L	7,459,978 – 7,460,080	- - CDS="CDS;ID=CDS_FBgn0045495:6_774;Name=Gr28b-cds;Parent=FBtr0079459;parent_type=mRNA" - - - - -	1369	7,459,978 – 7,460,080	+	3	120	59.65	-1.81	0.53	0.958818
1003	dm3.chr2L	7,460,866 – 7,460,982	- - - - - - - -	1370	7,460,866 – 7,460,982	-	5	120	90.14	-2.06	0.74	0.671088
1004	dm3.chr2L	7,470,139 – 7,470,234	- - - intron="intron;ID=intron_FBgn0031918:1_FBgn0031918:2;Name=CG6055-in;Parent=FBtr0079449;parent_type=mRNA" - - - -	1371	7,470,139 – 7,470,234	-	8	108	68.19	-1.56	0.43	0.887333
1005	dm3.chr2L	7,486,291 – 7,486,348	- - - intron="intron;ID=intron_FBgn0260486:13_FBgn0260486:12;Name=CG42533-in;Parent=FBtr0300897;parent_type=mRNA" - - - -	1372	7,486,291 – 7,486,348	-	5	65	65.44	-2.76	0.35	0.984592
1006	dm3.chr2L	7,495,506 – 7,495,611	- - CDS="CDS;ID=CDS_FBgn0260486:13_757;Name=CG42533-cds;Parent=FBtr0300897;parent_type=mRNA" - - - - -	1373	7,495,506 – 7,495,611	+	14	105	80.46	-2.93	0.37	0.943252
1007	dm3.chr2L	7,495,816 – 7,495,906	- - - - - - - -	1374	7,495,816 – 7,495,906	+	9	100	56.89	-1.11	0.28	0.527155
1008	dm3.chr2L	7,496,229 – 7,496,298	- - - - - - - -	1375	7,496,229 – 7,496,298	+	7	70	72.14	-1.13	0.55	0.630409
1009	dm3.chr2L	7,503,245 – 7,503,325	- - - intron="intron;ID=intron_FBgn0085403:4_FBgn0085403:3;Name=Rapgap1-in;Parent=FBtr0112606;parent_type=mRNA" - - - -	1376	7,503,245 – 7,503,325	+	6	85	87.43	-3.32	0.87	0.997766
1010	dm3.chr2L	7,513,145 – 7,513,235	- - - intron="intron;ID=intron_FBgn0085403:4_FBgn0085403:3;Name=Rapgap1-in;Parent=FBtr0112606;parent_type=mRNA" - - - -	1377	7,513,145 – 7,513,235	-	8	104	74.11	-1.83	0.47	0.695658
1011	dm3.chr2L	7,527,797 – 7,527,891	- - - - - - - -	1378	7,527,797 – 7,527,891	-	7	95	73.96	-1.14	0.58	0.596681
1012	dm3.chr2L	7,540,740 – 7,540,856	- - - intron="intron;ID=intron_FBgn0085403:7_FBgn0085403:6;Name=Rapgap1-in;Parent=FBtr0112605;parent_type=mRNA" - - - -	1379	7,540,740 – 7,540,856	+	3	117	88.89	-2.24	0.71	0.633745
1013	dm3.chr2L	7,551,170 – 7,551,263	- - - - - - - -	1380	7,551,170 – 7,551,263	+	9	108	63.09	-1.91	0.29	0.900676
1014	dm3.chr2L	7,556,009 – 7,556,106	- - - - - - - -	1381	7,556,009 – 7,556,106	+	10	103	76.46	-1.88	0.40	0.538254
1014	dm3.chr2L	7,556,009 – 7,556,106	- - - - - - - -	1382	7,556,009 – 7,556,106	-	10	103	76.46	-1.74	0.42	0.500000
1015	dm3.chr2L	7,584,833 – 7,584,930	- - - - - - - -	1383	7,584,833 – 7,584,930	+	7	113	74.77	-1.47	0.61	0.850289
1016	dm3.chr2L	7,597,735 – 7,597,836	- - - - - - - -	1384	7,597,735 – 7,597,836	-	9	112	76.57	-2.09	0.55	0.954229
1017	dm3.chr2L	7,600,921 – 7,601,012	- - - - - - - -	1385	7,600,921 – 7,601,012	+	5	93	75.19	-2.18	0.69	0.987025
1018	dm3.chr2L	7,602,474 – 7,602,594	- - - - - - - -	1386	7,602,474 – 7,602,574	+	9	109	66.25	-1.67	0.30	0.556474
				1387	7,602,474 – 7,602,574	-	9	109	66.25	-1.49	0.38	0.808059
				1388	7,602,494 – 7,602,594	-	9	108	56.58	-1.50	0.22	0.508830
1019	dm3.chr2L	7,602,717 – 7,602,801	- - - - - - - -	1389	7,602,717 – 7,602,801	-	3	86	68.38	-1.33	0.59	0.622894
1020	dm3.chr2L	7,623,658 – 7,623,763	- - - - - - - -	1390	7,623,658 – 7,623,753	-	5	106	77.09	-2.32	0.46	0.772583
				1391	7,623,668 – 7,623,763	+	5	107	81.14	-1.93	0.58	0.548152
				1392	7,623,668 – 7,623,763	-	5	107	81.14	-2.59	0.41	0.508932
1021	dm3.chr2L	7,624,718 – 7,624,811	- - - - - - - -	1393	7,624,718 – 7,624,811	-	8	107	76.15	-1.26	0.61	0.718556
1022	dm3.chr2L	7,634,203 – 7,634,299	- - - - - - - -	1394	7,634,203 – 7,634,299	-	5	110	58.37	-1.67	0.29	0.693665
1023	dm3.chr2L	7,641,742 – 7,641,858	- - - - - - - -	1395	7,641,742 – 7,641,858	-	5	132	70.58	-1.25	0.49	0.519846
1024	dm3.chr2L	7,652,962 – 7,653,052	- - - intron="intron;ID=intron_FBgn0024290:9_FBgn0024290:8;Name=Slob-in;Parent=FBtr0079519,FBtr0079517,FBtr0079518,FBtr0100158,FBtr0303527;parent_type=mRNA" - - - -	1396	7,652,962 – 7,653,052	+	7	93	82.33	-1.31	0.74	0.668352
1024	dm3.chr2L	7,652,962 – 7,653,052		1397	7,652,962 – 7,653,052	-	7	93	82.33	-1.47	0.70	0.690838
1025	dm3.chr2L	7,655,117 – 7,655,234	- - CDS="CDS;ID=CDS_FBgn0024290:9_842;Name=Slob-cds;Parent=FBtr0079519,FBtr0079518,FBtr0303527;parent_type=mRNA" - - - - -	1398	7,655,117 – 7,655,234	-	12	120	94.14	-1.49	0.86	0.521545
1026	dm3.chr2L	7,664,872 – 7,665,061	- - - intron="intron;ID=intron_FBgn0024290:17_FBgn0024290:16;Name=Slob-in;Parent=FBtr0079517,FBtr0303528;parent_type=mRNA" - - - -	1399	7,664,872 – 7,664,943	+	7	72	91.52	-1.57	0.83	0.594668
1026	dm3.chr2L	7,664,872 – 7,665,061		1400	7,664,943 – 7,665,061	-	5	118	69.87	-1.36	0.47	0.726364
1027	dm3.chr2L	7,668,079 – 7,668,136	- - - intron="intron;ID=intron_FBgn0040299:1_FBgn0040299:3;Name=Myo28B1-in;Parent=FBtr0079473,FBtr0079474;parent_type=mRNA" - - - -	1401	7,668,079 – 7,668,136	+	6	59	78.79	-2.19	0.41	0.566378
1028	dm3.chr2L	7,668,613 – 7,668,706	- - - intron="intron;ID=intron_FBgn0040299:1_FBgn0040299:3;Name=Myo28B1-in;Parent=FBtr0079473,FBtr0079474;parent_type=mRNA" - - - -	1402	7,668,613 – 7,668,706	-	7	112	63.83	-1.46	0.44	0.948609
1029	dm3.chr2L	7,668,896 – 7,668,986	- - - intron="intron;ID=intron_FBgn0040299:1_FBgn0040299:3;Name=Myo28B1-in;Parent=FBtr0079473,FBtr0079474;parent_type=mRNA" - - - -	1403	7,668,896 – 7,668,986	+	6	90	77.63	-2.26	0.47	0.896496
1030	dm3.chr2L	7,670,149 – 7,670,246	- - - intron="intron;ID=intron_FBgn0040299:1_FBgn0040299:3;Name=Myo28B1-in;Parent=FBtr0079473,FBtr0079474;parent_type=mRNA" - - - -	1404	7,670,149 – 7,670,246	+	6	103	90.24	-2.13	0.71	0.627456
1031	dm3.chr2L	7,672,198 – 7,672,296	- - - intron="intron;ID=intron_FBgn0040299:1_FBgn0040299:3;Name=Myo28B1-in;Parent=FBtr0079473,FBtr0079474;parent_type=mRNA" - - - -	1405	7,672,198 – 7,672,296	+	6	103	89.83	-2.54	0.77	0.948552
1032	dm3.chr2L	7,679,693 – 7,679,783	- - - intron="intron;ID=intron_FBgn0040299:2_FBgn0040299:3;Name=Myo28B1-in;Parent=FBtr0079475,FBtr0079476;parent_type=mRNA" - - - -	1406	7,679,693 – 7,679,783	-	6	96	72.13	-1.79	0.46	0.858532
1033	dm3.chr2L	7,679,886 – 7,679,980	- - - intron="intron;ID=intron_FBgn0040299:2_FBgn0040299:3;Name=Myo28B1-in;Parent=FBtr0079475,FBtr0079476;parent_type=mRNA" - - - -	1407	7,679,886 – 7,679,980	-	11	111	65.76	-1.38	0.49	0.951501
1034	dm3.chr2L	7,683,752 – 7,683,848	- - - intron="intron;ID=intron_FBgn0040299:6_FBgn0040299:9;Name=Myo28B1-in;Parent=FBtr0079473,FBtr0079475;parent_type=mRNA" - - - -	1408	7,683,752 – 7,683,848	+	12	96	86.46	-1.73	0.71	0.727986
1035	dm3.chr2L	7,740,557 – 7,740,654	- - - - - - - -	1409	7,740,557 – 7,740,652	-	8	102	75.53	-2.45	0.64	0.993721
1035	dm3.chr2L	7,740,557 – 7,740,654	- - - - - - - -	1410	7,740,557 – 7,740,654	-	8	104	74.73	-2.35	0.64	0.993733
1036	dm3.chr2L	7,749,821 – 7,749,916	- - - - - - - -	1411	7,749,821 – 7,749,916	+	6	112	90.55	-2.97	0.59	0.835275
1037	dm3.chr2L	7,780,477 – 7,780,625	- - CDS="CDS;ID=CDS_FBgn0003961:1_789;Name=Uro-cds;Parent=FBtr0079486;parent_type=mRNA" - - - - -	1412	7,780,477 – 7,780,588	+	10	120	72.15	-0.83	0.57	0.715015
1037	dm3.chr2L	7,780,477 – 7,780,625		1413	7,780,517 – 7,780,625	-	10	117	67.60	-1.66	0.30	0.552115
1038	dm3.chr2L	7,788,394 – 7,788,487	- - CDS="CDS;ID=CDS_CG7149:2_722;Name=CG7149-cds;Parent=FBtr0079496;parent_type=mRNA" - - - - -	1414	7,788,394 – 7,788,487	+	14	98	71.70	-2.50	0.20	0.641590
1039	dm3.chr2L	7,821,476 – 7,821,557	- - - - - - - -	1415	7,821,476 – 7,821,557	-	8	86	60.91	-2.55	0.13	0.777340
1040	dm3.chr2L	7,824,277 – 7,824,369	- - CDS="CDS;ID=CDS_FBgn0027515:5_782;Name=CG7115-cds;Parent=FBtr0079523,FBtr0079524;parent_type=mRNA" - - - - -	1416	7,824,277 – 7,824,369	-	15	108	66.51	-1.02	0.54	0.974164
1041	dm3.chr2L	7,829,754 – 7,829,856	- - - intron="intron;ID=intron_CG7109:1_CG7109:2;Name=mts-in;Parent=FBtr0079525;parent_type=mRNA" - - - -	1417	7,829,754 – 7,829,856	-	7	124	64.52	-1.83	0.27	0.700652
1042	dm3.chr2L	7,833,692 – 7,833,785	- - - - - - - -	1418	7,833,692 – 7,833,785	+	8	95	65.95	-2.34	0.38	0.993947
1043	dm3.chr2L	7,833,861 – 7,833,977	- - - - - - - -	1419	7,833,861 – 7,833,952	-	10	117	80.26	-2.52	0.51	0.919236
1043	dm3.chr2L	7,833,861 – 7,833,977	- - - - - - - -	1420	7,833,876 – 7,833,977	+	9	119	74.65	-2.34	0.48	0.985426
1044	dm3.chr2L	7,844,698 – 7,844,823	- - - - - - - -	1421	7,844,698 – 7,844,792	-	6	104	90.48	-2.56	0.69	0.838468
				1422	7,844,728 – 7,844,823	+	6	104	75.91	-2.35	0.49	0.940322
				1423	7,844,728 – 7,844,823	-	6	104	75.91	-2.64	0.54	0.988799
1045	dm3.chr2L	7,851,585 – 7,851,671	- - CDS="CDS;ID=CDS_FBgn0031955:5_838;Name=CG14535-cds;Parent=FBtr0079564;parent_type=mRNA" - - - - -	1424	7,851,585 – 7,851,671	+	4	86	84.69	-1.73	0.73	0.622666
1045	dm3.chr2L	7,851,585 – 7,851,671		1425	7,851,585 – 7,851,671	-	4	86	84.69	-1.50	0.77	0.562540
1046	dm3.chr2L	7,854,460 – 7,854,555	- - - intron="intron;ID=intron_FBgn0031955:7_FBgn0031955:6;Name=CG14535-in;Parent=FBtr0079564;parent_type=mRNA" - - - -	1426	7,854,460 – 7,854,555	-	12	116	71.75	-0.64	0.61	0.533540
1047	dm3.chr2L	7,857,823 – 7,857,892	- - CDS="CDS;ID=CDS_CG7106:1_720;Name=lectin-28C-cds;Parent=FBtr0079527;parent_type=mRNA" - - - - -	1427	7,857,823 – 7,857,892	+	3	69	56.52	-0.71	0.63	0.864781
1048	dm3.chr2L	7,870,953 – 7,871,081	- - - intron="intron;ID=intron_CG7105:1_CG7105:2;Name=Proct-in;Parent=FBtr0079562;parent_type=mRNA" - - - -	1428	7,870,953 – 7,871,051	+	5	102	92.67	-2.96	0.89	0.991932
				1429	7,870,953 – 7,871,051	-	5	102	92.67	-2.57	0.90	0.982696
				1430	7,870,991 – 7,871,081	+	6	95	87.13	-1.85	0.68	0.509419
1049	dm3.chr2L	7,883,141 – 7,883,203	- - - - - - - -	1431	7,883,141 – 7,883,203	+	6	62	82.58	-2.20	0.62	0.892714
1049	dm3.chr2L	7,883,141 – 7,883,203	- - - - - - - -	1432	7,883,141 – 7,883,203	-	6	62	82.58	-2.07	0.80	0.973068
1050	dm3.chr2L	7,899,603 – 7,899,693	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1433	7,899,603 – 7,899,693	+	5	102	88.82	-2.37	0.83	0.957952
1050	dm3.chr2L	7,899,603 – 7,899,693		1434	7,899,603 – 7,899,693	-	5	102	88.82	-1.30	0.97	0.891418
1051	dm3.chr2L	7,899,876 – 7,899,977	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1435	7,899,876 – 7,899,977	-	3	101	86.75	-1.42	0.89	0.749359
1052	dm3.chr2L	7,901,857 – 7,901,948	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1436	7,901,857 – 7,901,948	+	3	99	88.93	-1.15	0.91	0.545585
1053	dm3.chr2L	7,913,491 – 7,913,613	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1437	7,913,491 – 7,913,583	+	6	94	91.29	-1.32	0.88	0.581681
				1438	7,913,491 – 7,913,583	-	6	94	91.29	-1.57	0.89	0.796261
				1439	7,913,518 – 7,913,613	+	8	118	71.00	-1.35	0.59	0.830873
1054	dm3.chr2L	7,915,695 – 7,915,748	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1440	7,915,695 – 7,915,748	+	5	53	87.36	-1.16	1.00	0.914919
1055	dm3.chr2L	7,923,993 – 7,924,083	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1441	7,923,993 – 7,924,083	-	6	102	78.94	-0.48	0.88	0.507539
1056	dm3.chr2L	7,936,059 – 7,936,151	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1442	7,936,059 – 7,936,151	+	6	112	58.70	-2.21	0.31	0.971703
1057	dm3.chr2L	7,939,535 – 7,939,634	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1443	7,939,535 – 7,939,634	-	5	99	80.80	-1.62	0.63	0.556363
1058	dm3.chr2L	7,941,151 – 7,941,245	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1444	7,941,151 – 7,941,245	+	7	103	73.52	-1.47	0.50	0.668872
1058	dm3.chr2L	7,941,151 – 7,941,245		1445	7,941,151 – 7,941,245	-	7	103	73.52	-1.29	0.56	0.727522
1059	dm3.chr2L	7,947,154 – 7,947,247	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1446	7,947,154 – 7,947,247	-	5	109	76.37	-3.18	0.61	0.997719
1060	dm3.chr2L	7,952,125 – 7,952,216	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1447	7,952,125 – 7,952,216	-	11	120	79.74	-1.45	0.62	0.519989
1061	dm3.chr2L	7,954,018 – 7,954,116	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1448	7,954,018 – 7,954,116	+	5	106	71.23	-1.18	0.54	0.500000
1061	dm3.chr2L	7,954,018 – 7,954,116		1449	7,954,018 – 7,954,116	-	5	106	71.23	-2.45	0.65	0.996656
1062	dm3.chr2L	7,957,956 – 7,958,065	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:2;Name=Snoo-in;Parent=FBtr0112717;parent_type=mRNA" - - - -	1450	7,957,956 – 7,958,065	+	4	121	66.67	-2.33	0.49	0.984845
1062	dm3.chr2L	7,957,956 – 7,958,065		1451	7,957,956 – 7,958,065	-	4	121	66.67	-2.31	0.39	0.913522
1063	dm3.chr2L	7,962,603 – 7,962,700	- - - intron="intron;ID=intron_FBgn0085450:8_FBgn0085450:4;Name=Snoo-in;Parent=FBtr0112720;parent_type=mRNA" - - - -	1452	7,962,603 – 7,962,700	+	8	103	71.85	-2.50	0.48	0.993804
1064	dm3.chr2L	7,993,439 – 7,993,530	- - - intron="intron;ID=intron_FBgn0031969:5_FBgn0031969:4;Name=pes-in;Parent=FBtr0114550;parent_type=mRNA" - - - -	1453	7,993,439 – 7,993,530	-	10	109	66.39	-1.78	0.42	0.936212
1065	dm3.chr2L	7,998,749 – 7,998,855	- - - - - - - -	1454	7,998,749 – 7,998,855	-	6	115	54.40	-1.34	0.34	0.857934
1066	dm3.chr2L	8,035,191 – 8,035,321	- - - intron="intron;ID=intron_FBgn0044323:5_FBgn0044323:6;Name=Cka-in;Parent=FBtr0079536,FBtr0079537,FBtr0079538,FBtr0079539,FBtr0306000,FBtr0306001;parent_type=mRNA" - - - -	1455	8,035,191 – 8,035,287	-	6	108	69.66	-1.40	0.52	0.872954
1066	dm3.chr2L	8,035,191 – 8,035,321		1456	8,035,218 – 8,035,321	-	8	110	65.73	-1.73	0.28	0.614860
1067	dm3.chr2L	8,044,716 – 8,044,830	- - - intron="intron;ID=intron_CG7466:2_CG7466:3;Name=CG7466-in;Parent=FBtr0079541;parent_type=mRNA" - - - -	1457	8,044,716 – 8,044,830	+	8	114	69.61	-1.17	0.60	0.925276
1068	dm3.chr2L	8,052,511 – 8,052,631	- - CDS="CDS;ID=CDS_CG7466:6_722;Name=CG7466-cds;Parent=FBtr0079541;parent_type=mRNA" - - - - -	1458	8,052,511 – 8,052,631	+	12	120	82.85	-2.59	0.73	0.994139
1069	dm3.chr2L	8,060,768 – 8,060,874	- - CDS="CDS;ID=CDS_CG14472:8_705;Name=poe-cds;Parent=FBtr0079545;parent_type=mRNA" - - - - -	1459	8,060,768 – 8,060,874	+	14	106	73.57	-2.04	0.36	0.913259
1070	dm3.chr2L	8,075,067 – 8,075,220	- - - - - - - -	1460	8,075,067 – 8,075,220	-	12	156	72.45	-0.16	0.68	0.514054
1071	dm3.chr2L	8,075,532 – 8,075,625	- - CDS="CDS;ID=CDS_CG7586:5_738;Name=Mcr-cds;Parent=FBtr0079543;parent_type=mRNA" - - - - -	1461	8,075,532 – 8,075,625	-	13	106	71.07	-0.63	0.54	0.553234
1072	dm3.chr2L	8,086,674 – 8,086,733	- - - intron="intron;ID=intron_FBgn0011219:2_FBgn0011219:5;Name=Bsg-in;Parent=FBtr0079569;parent_type=mRNA" - - - -	1462	8,086,674 – 8,086,733	+	7	76	76.00	-2.10	0.49	0.723223
1073	dm3.chr2L	8,086,826 – 8,086,930	- - - intron="intron;ID=intron_FBgn0011219:2_FBgn0011219:5;Name=Bsg-in;Parent=FBtr0079569;parent_type=mRNA" - - - -	1463	8,086,826 – 8,086,930	-	6	116	79.05	-1.44	0.67	0.747129
1074	dm3.chr2L	8,105,931 – 8,106,059	- - - intron="intron;ID=intron_FBgn0011219:10_FBgn0011219:11;Name=Bsg-in;Parent=FBtr0079570,FBtr0079568,FBtr0079569,FBtr0079574,FBtr0079573,FBtr0079567,FBtr0079571,FBtr0079572,FBtr0079566;parent_type=mRNA" - - - -	1464	8,105,931 – 8,106,059	+	12	156	71.02	-0.83	0.49	0.500000
1075	dm3.chr2L	8,106,185 – 8,106,359	- - - intron="intron;ID=intron_FBgn0011219:10_FBgn0011219:11;Name=Bsg-in;Parent=FBtr0079570,FBtr0079568,FBtr0079569,FBtr0079574,FBtr0079573,FBtr0079567,FBtr0079571,FBtr0079572,FBtr0079566;parent_type=mRNA" - - - -	1465	8,106,185 – 8,106,300	+	5	115	74.58	-1.19	0.64	0.700143
1075	dm3.chr2L	8,106,185 – 8,106,359		1466	8,106,300 – 8,106,359	-	5	59	97.97	-1.75	1.00	0.951638
1076	dm3.chr2L	8,109,700 – 8,109,790	- - - intron="intron;ID=intron_FBgn0011219:14_FBgn0011219:16;Name=Bsg-in;Parent=FBtr0079574;parent_type=mRNA" - - - -	1467	8,109,700 – 8,109,790	-	7	91	87.77	-2.18	0.82	0.945588
1077	dm3.chr2L	8,113,620 – 8,113,811	- - - - - - - -	1468	8,113,620 – 8,113,753	-	8	135	68.11	-1.38	0.42	0.767680
				1469	8,113,753 – 8,113,811	+	5	58	97.24	-1.41	0.99	0.873994
				1470	8,113,753 – 8,113,811	-	5	58	97.24	-2.02	0.95	0.941834
1078	dm3.chr2L	8,114,895 – 8,114,987	- - - - - - - -	1471	8,114,895 – 8,114,987	-	7	102	85.33	-1.83	0.76	0.806292
1079	dm3.chr2L	8,115,870 – 8,116,062	- - - - - - - -	1472	8,115,870 – 8,115,965	+	7	96	78.39	-1.96	0.51	0.848690
				1473	8,115,942 – 8,116,038	+	7	105	85.83	-1.80	0.99	0.983478
				1474	8,115,965 – 8,116,062	+	6	103	91.73	-1.31	1.00	0.920215
				1475	8,115,965 – 8,116,062	-	6	103	91.73	-2.05	1.00	0.987490
1080	dm3.chr2L	8,116,155 – 8,116,235	- - - - - - - -	1476	8,116,155 – 8,116,235	-	9	95	75.48	-2.46	0.38	0.892060
1081	dm3.chr2L	8,127,864 – 8,127,914	- - - intron="intron;ID=intron_FBgn0031988:1_FBgn0031988:2;Name=CG8668-in;Parent=FBtr0079576;parent_type=mRNA" - - - -	1477	8,127,864 – 8,127,914	+	5	50	92.80	-2.39	0.88	0.963650
1081	dm3.chr2L	8,127,864 – 8,127,914		1478	8,127,864 – 8,127,914	-	5	50	92.80	-1.84	0.84	0.720051
1082	dm3.chr2L	8,128,946 – 8,129,104	- - - intron="intron;ID=intron_FBgn0031988:1_FBgn0031988:2;Name=CG8668-in;Parent=FBtr0079576;parent_type=mRNA" - - - -	1479	8,128,946 – 8,129,064	+	3	121	66.57	-2.41	0.51	0.975148
1082	dm3.chr2L	8,128,946 – 8,129,104		1480	8,128,985 – 8,129,104	+	4	119	77.50	-1.98	0.58	0.817481
1083	dm3.chr2L	8,129,709 – 8,129,826	- - - intron="intron;ID=intron_FBgn0031988:1_FBgn0031988:2;Name=CG8668-in;Parent=FBtr0079576;parent_type=mRNA" - - - -	1481	8,129,709 – 8,129,826	+	5	120	73.84	-1.39	0.57	0.755641
1084	dm3.chr2L	8,144,401 – 8,144,521	- - - - - - - -	1482	8,144,401 – 8,144,521	+	4	120	80.06	-1.59	0.73	0.794474
1085	dm3.chr2L	8,145,399 – 8,145,495	- - - - - - - -	1483	8,145,399 – 8,145,495	+	6	96	74.08	-1.46	0.57	0.853109
1086	dm3.chr2L	8,146,804 – 8,146,876	- - - - - - - -	1484	8,146,804 – 8,146,876	+	6	72	73.52	-0.90	0.62	0.689518
1086	dm3.chr2L	8,146,804 – 8,146,876	- - - - - - - -	1485	8,146,804 – 8,146,876	-	6	72	73.52	-0.85	0.69	0.802943
1087	dm3.chr2L	8,154,691 – 8,154,822	- - - intron="intron;ID=intron_FBgn0051607:4_FBgn0051607:5;Name=CG31607-in;Parent=FBtr0079579;parent_type=mRNA" - - - -	1486	8,154,691 – 8,154,804	+	5	120	91.62	-2.68	0.88	0.985375
				1487	8,154,691 – 8,154,804	-	5	120	91.62	-3.23	0.79	0.989199
				1488	8,154,731 – 8,154,822	-	5	120	77.17	-1.74	0.69	0.856339
1088	dm3.chr2L	8,155,637 – 8,155,739	- - - - - - - -	1489	8,155,637 – 8,155,739	+	7	112	56.38	-2.88	0.50	0.999950
1088	dm3.chr2L	8,155,637 – 8,155,739	- - - - - - - -	1490	8,155,637 – 8,155,739	-	7	112	56.38	-2.86	0.31	0.999127
1089	dm3.chr2L	8,170,984 – 8,171,075	- - - intron="intron;ID=intron_FBgn0031993:1_FBgn0031993:2;Name=CG8486-in;Parent=FBtr0300332,FBtr0300333,FBtr0300334,FBtr0303398,FBtr0303399,FBtr0303400;parent_type=mRNA" - - - -	1491	8,170,984 – 8,171,075	-	5	92	82.80	-1.49	0.83	0.809616
1090	dm3.chr2L	8,173,578 – 8,173,686	- - CDS="CDS;ID=CDS_FBgn0031993:4_782;Name=CG8486-cds;Parent=FBtr0300332,FBtr0300334,FBtr0303398,FBtr0303399,FBtr0303400;parent_type=mRNA" - - - - -	1492	8,173,578 – 8,173,686	+	10	117	69.19	-1.26	0.39	0.706649
1091	dm3.chr2L	8,177,537 – 8,177,647	- - CDS="CDS;ID=CDS_FBgn0031993:12_841;Name=CG8486-cds;Parent=FBtr0300333;parent_type=mRNA" - - - - -	1493	8,177,537 – 8,177,647	+	15	120	75.59	-1.89	0.33	0.500000
1092	dm3.chr2L	8,178,154 – 8,178,261	- - CDS="CDS;ID=CDS_FBgn0031993:13_841;Name=CG8486-cds;Parent=FBtr0300333;parent_type=mRNA" - - - - -	1494	8,178,154 – 8,178,261	+	13	117	78.57	-2.99	0.57	0.998248
1093	dm3.chr2L	8,193,006 – 8,193,181	- - - intron="intron;ID=intron_FBgn0031995:5_FBgn0031995:4;Name=CG8475-in;Parent=FBtr0079638;parent_type=mRNA" - - - -	1495	8,193,006 – 8,193,110	-	12	116	62.96	-1.35	0.45	0.984060
1093	dm3.chr2L	8,193,006 – 8,193,181		1496	8,193,081 – 8,193,181	-	12	108	67.91	-0.53	0.46	0.500000
1094	dm3.chr2L	8,196,324 – 8,196,424	- - - - - - - -	1497	8,196,324 – 8,196,424	+	13	117	67.71	-0.95	0.50	0.872240
1095	dm3.chr2L	8,196,936 – 8,196,990	- - - - - - - -	1498	8,196,936 – 8,196,990	-	5	54	87.22	-2.24	0.70	0.837981
1096	dm3.chr2L	8,219,851 – 8,219,948	- - CDS="CDS;ID=CDS_FBgn0032005:6_789;Name=Snx6-cds;Parent=FBtr0079631;parent_type=mRNA" - - - - -	1499	8,219,851 – 8,219,948	-	13	116	70.66	-1.33	0.48	0.899540
1097	dm3.chr2L	8,220,279 – 8,220,331	- - CDS="CDS;ID=CDS_FBgn0032005:7_878;Name=Snx6-cds;Parent=FBtr0306170;parent_type=mRNA" - - - - -	1500	8,220,279 – 8,220,331	-	5	52	85.77	-2.22	0.73	0.915921
1098	dm3.chr2L	8,236,285 – 8,236,375	- - - - - - - -	1501	8,236,285 – 8,236,375	-	7	105	61.72	-1.50	0.34	0.780582
1099	dm3.chr2L	8,245,733 – 8,245,812	- - CDS="CDS;ID=CDS_FBgn0032010:6_782;Name=CG8086-cds;Parent=FBtr0273380;parent_type=mRNA" - - - - -	1502	8,245,733 – 8,245,812	-	11	79	81.81	-1.40	0.64	0.624030
1100	dm3.chr2L	8,249,066 – 8,249,138	- - CDS="CDS;ID=CDS_FBgn0032010:10_880;Name=CG8086-cds;Parent=FBtr0273381;parent_type=mRNA" - - - - -	1503	8,249,066 – 8,249,138	+	12	72	76.22	-1.27	0.58	0.843448
1101	dm3.chr2L	8,249,590 – 8,249,647	- - CDS="CDS;ID=CDS_FBgn0032010:10_880;Name=CG8086-cds;Parent=FBtr0273381;parent_type=mRNA" - - - - -	1504	8,249,590 – 8,249,647	+	10	63	70.22	-1.59	0.39	0.762155
1102	dm3.chr2L	8,262,086 – 8,262,201	- - CDS="CDS;ID=CDS_FBgn0003502:7_705;Name=Btk29A-cds;Parent=FBtr0079615,FBtr0079617,FBtr0079618;parent_type=mRNA" intron="intron;ID=intron_FBgn0003502:7_FBgn0003502:6;Name=Btk29A-in;Parent=FBtr0079615,FBtr0079616,FBtr0079617,FBtr0079618,FBtr0112835,FBtr0112836;parent_type=mRNA" - - - -	1505	8,262,086 – 8,262,201	-	12	119	64.24	-0.34	0.55	0.898555
1103	dm3.chr2L	8,290,681 – 8,290,806	FBnoncoding="tRNA;ID=FBtr0079596;Name=tRNA:K5:29A-RA;Parent=FBgn0011902;Dbxref=FlyBase_Annotation_IDs:CR31899-RA;score_text=Weakly" tRNAscann="Lys_chr2L_trna11" - intron="intron;ID=intron_FBgn0003502:17_FBgn0003502:16;Name=Btk29A-in;Parent=FBtr0079616,FBtr0079617,FBtr0112836;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAJJ01001092.1/1840-1912\|1.5e-34" - - -	1506	8,290,681 – 8,290,806	+	13	146	70.93	-1.80	0.67	0.996861
1103	dm3.chr2L	8,290,681 – 8,290,806		1507	8,290,681 – 8,290,806	-	13	146	70.93	-1.74	0.60	0.993736
1104	dm3.chr2L	8,292,728 – 8,292,780	- - - intron="intron;ID=intron_FBgn0003502:17_FBgn0003502:16;Name=Btk29A-in;Parent=FBtr0079616,FBtr0079617,FBtr0112836;parent_type=mRNA" - - - -	1508	8,292,728 – 8,292,780	-	7	57	85.48	-1.58	0.98	0.968434
1105	dm3.chr2L	8,294,735 – 8,294,837	- - - intron="intron;ID=intron_FBgn0003502:17_FBgn0003502:16;Name=Btk29A-in;Parent=FBtr0079616,FBtr0079617,FBtr0112836;parent_type=mRNA" - - - -	1509	8,294,735 – 8,294,837	+	4	112	80.22	-1.20	0.84	0.740627
1106	dm3.chr2L	8,297,985 – 8,298,054	- - - intron="intron;ID=intron_FBgn0003502:17_FBgn0003502:16;Name=Btk29A-in;Parent=FBtr0079616,FBtr0079617,FBtr0112836;parent_type=mRNA" - - - -	1510	8,297,985 – 8,298,054	+	5	74	66.19	-1.23	0.54	0.909077
1107	dm3.chr2L	8,301,820 – 8,301,919	- - - intron="intron;ID=intron_CG7870:3_CG7870:4;Name=wol-in;Parent=FBtr0079614;parent_type=mRNA" - - - -	1511	8,301,820 – 8,301,919	-	12	110	61.09	-0.60	0.56	0.969157
1108	dm3.chr2L	8,311,622 – 8,311,738	- - CDS="CDS;ID=CDS_CG7806:1_722;Name=CG7806-cds;Parent=FBtr0079600;parent_type=mRNA" - - - - -	1512	8,311,622 – 8,311,738	-	14	118	75.42	-1.24	0.48	0.721451
1109	dm3.chr2L	8,325,388 – 8,325,480	- - - - - - - -	1513	8,325,388 – 8,325,480	-	6	108	65.92	-1.57	0.43	0.889596
1110	dm3.chr2L	8,346,550 – 8,346,668	- - - - - - - -	1514	8,346,550 – 8,346,668	-	11	120	73.25	-1.73	0.37	0.619624
1111	dm3.chr2L	8,348,021 – 8,348,156	- - - intron="intron;ID=intron_CG7778:1_CG7778:2;Name=CG7778-in;Parent=FBtr0079606;parent_type=mRNA" - - - -	1515	8,348,021 – 8,348,156	+	8	146	68.95	-1.10	0.46	0.618645
1112	dm3.chr2L	8,364,601 – 8,364,697	- - - - - - - -	1516	8,364,601 – 8,364,697	+	6	100	81.08	-1.46	0.66	0.641864
1112	dm3.chr2L	8,364,601 – 8,364,697	- - - - - - - -	1517	8,364,601 – 8,364,697	-	6	100	81.08	-2.06	0.64	0.927598
1113	dm3.chr2L	8,371,018 – 8,371,152	- - - intron="intron;ID=intron_FBgn0032029:1_FBgn0032029:3;Name=CG17292-in;Parent=FBtr0079648;parent_type=mRNA" - - - -	1518	8,371,018 – 8,371,119	+	7	106	57.17	-0.61	0.51	0.905739
				1519	8,371,018 – 8,371,119	-	7	106	57.17	-1.00	0.46	0.943596
				1520	8,371,054 – 8,371,152	+	6	105	59.93	-1.66	0.35	0.916850
1114	dm3.chr2L	8,377,893 – 8,377,943	- - CDS="CDS;ID=CDS_FBgn0032032:4_841;Name=CG17294-cds;Parent=FBtr0079651;parent_type=mRNA" - - - - -	1521	8,377,893 – 8,377,943	-	12	56	68.13	-0.99	0.54	0.921654
1115	dm3.chr2L	8,397,102 – 8,397,203	- - CDS="CDS;ID=CDS_FBgn0032039:1_722;Name=CG13385-cds;Parent=FBtr0079660;parent_type=mRNA" - - - - -	1522	8,397,102 – 8,397,203	+	6	121	68.17	-1.04	0.54	0.659674
1116	dm3.chr2L	8,408,166 – 8,408,271	- - - - - - - -	1523	8,408,166 – 8,408,271	+	12	116	71.41	-1.45	0.55	0.963893
1117	dm3.chr2L	8,417,699 – 8,417,794	- - - intron="intron;ID=intron_CG13388:1_CG13388:2;Name=Akap200-in;Parent=FBtr0079664,FBtr0079667;parent_type=mRNA" - - - -	1524	8,417,699 – 8,417,794	+	7	109	70.88	-1.65	0.63	0.983044
1117	dm3.chr2L	8,417,699 – 8,417,794		1525	8,417,699 – 8,417,794	-	7	109	70.88	-1.73	0.70	0.992110
1118	dm3.chr2L	8,421,236 – 8,421,386	- - - intron="intron;ID=intron_CG13388:7_CG13388:2;Name=Akap200-in;Parent=FBtr0079665;parent_type=mRNA" - - - -	1526	8,421,236 – 8,421,337	+	3	101	79.93	-3.54	0.42	0.956526
				1527	8,421,278 – 8,421,386	+	3	108	84.21	-3.71	0.53	0.984219
				1528	8,421,278 – 8,421,386	-	3	108	84.21	-2.58	0.52	0.509785
1119	dm3.chr2L	8,421,616 – 8,421,755	- - - intron="intron;ID=intron_CG13388:7_CG13388:2;Name=Akap200-in;Parent=FBtr0079665;parent_type=mRNA" - - - -	1529	8,421,616 – 8,421,717	+	8	116	80.09	-2.92	0.42	0.911806
				1530	8,421,616 – 8,421,717	-	8	116	80.09	-3.31	0.50	0.991814
				1531	8,421,645 – 8,421,755	+	6	120	84.00	-0.84	0.91	0.629519
				1532	8,421,645 – 8,421,755	-	6	120	84.00	-1.43	0.76	0.629744
1120	dm3.chr2L	8,423,671 – 8,423,739	- - - intron="intron;ID=intron_CG13388:7_CG13388:2;Name=Akap200-in;Parent=FBtr0079665;parent_type=mRNA" - - - -	1533	8,423,671 – 8,423,739	+	8	71	60.52	-1.26	0.29	0.557289
1121	dm3.chr2L	8,425,865 – 8,425,957	- - - intron="intron;ID=intron_CG13388:7_CG13388:2;Name=Akap200-in;Parent=FBtr0079665;parent_type=mRNA" - - - -	1534	8,425,865 – 8,425,957	-	4	96	79.50	-1.18	0.97	0.927174
1122	dm3.chr2L	8,434,301 – 8,434,397	- - CDS="CDS;ID=CDS_CG13400:2_711;Name=D12-cds;Parent=FBtr0079707;parent_type=mRNA" - - - - -	1535	8,434,301 – 8,434,397	-	12	111	65.06	-1.02	0.36	0.534984
1123	dm3.chr2L	8,443,771 – 8,443,848	- - CDS="CDS;ID=CDS_FBgn0051897:1_774;Name=CG31897-cds;Parent=FBtr0079673;parent_type=mRNA" - - - - -	1536	8,443,771 – 8,443,848	-	6	78	61.11	-1.38	0.43	0.963151
1124	dm3.chr2L	8,444,871 – 8,445,009	- - CDS="CDS;ID=CDS_FBgn0051897:1_774;Name=CG31897-cds;Parent=FBtr0079673;parent_type=mRNA" - - - - -	1537	8,444,871 – 8,444,987	-	7	120	67.85	-1.24	0.40	0.618842
1124	dm3.chr2L	8,444,871 – 8,445,009		1538	8,444,889 – 8,445,009	-	7	120	69.68	-1.41	0.48	0.920008
1125	dm3.chr2L	8,463,960 – 8,464,084	- - - - - - - -	1539	8,463,960 – 8,464,062	+	5	110	86.62	-1.85	0.76	0.714770
				1540	8,463,960 – 8,464,062	-	5	110	86.62	-1.81	0.76	0.684392
				1541	8,463,991 – 8,464,084	+	4	119	72.96	-1.91	0.64	0.919086
				1542	8,463,991 – 8,464,084	-	4	119	72.96	-2.65	0.75	0.996178
1126	dm3.chr2L	8,470,383 – 8,470,502	- - - intron="intron;ID=intron_FBgn0262029:1_FBgn0262029:2;Name=d-in;Parent=FBtr0303924;parent_type=mRNA" - - - -	1543	8,470,383 – 8,470,502	+	5	143	70.43	-2.51	0.53	0.987682
1126	dm3.chr2L	8,470,383 – 8,470,502		1544	8,470,383 – 8,470,502	-	5	143	70.43	-2.06	0.47	0.869453
1127	dm3.chr2L	8,476,016 – 8,476,096	- - - intron="intron;ID=intron_FBgn0262029:1_FBgn0262029:2;Name=d-in;Parent=FBtr0303924;parent_type=mRNA" - - - -	1545	8,476,016 – 8,476,096	-	4	91	78.73	-1.43	0.67	0.506202
1128	dm3.chr2L	8,481,770 – 8,481,862	FBnoncoding="tRNA;ID=FBtr0079677;Name=tRNA:CR31896-RA;Parent=FBgn0051896;Alias=CR31896-RA;Dbxref=FlyBase_Annotation_IDs:CR31896-RA;score_text=Weakly" tRNAscann="Asp_chr2L_trna12" - intron="intron;ID=intron_FBgn0262029:4_FBgn0262029:7;Name=d-in;Parent=FBtr0303923;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010887279.1/1267-1338\|5.9e-27" "Noncode_2.0=n112842_u111940_DQ604839_piRNA_Norway\|7.4e-08" "unique_Noncode_2.0=u111940_piRNA_Norway\|6.4e-08" -	1546	8,481,770 – 8,481,862	+	11	95	72.66	-1.33	0.87	0.991777
1128	dm3.chr2L	8,481,770 – 8,481,862		1547	8,481,770 – 8,481,862	-	11	95	72.66	-1.00	0.83	0.982476
1129	dm3.chr2L	8,490,449 – 8,490,499	- - - - - - - -	1548	8,490,449 – 8,490,499	+	3	51	76.97	-1.60	0.70	0.669825
1130	dm3.chr2L	8,490,609 – 8,490,719	- - - - - - - -	1549	8,490,609 – 8,490,719	-	6	124	72.45	-2.18	0.45	0.930001
1131	dm3.chr2L	8,496,446 – 8,496,537	- - - intron="intron;ID=intron_FBgn0032048:6_FBgn0032048:5;Name=Dh31-in;Parent=FBtr0079699,FBtr0300450;parent_type=mRNA" - - - -	1550	8,496,446 – 8,496,537	-	4	98	83.82	-1.29	0.79	0.500000
1132	dm3.chr2L	8,541,760 – 8,541,847	FBnoncoding="tRNA;ID=FBtr0079690;Name=tRNA:CR31603-RA;Parent=FBgn0051603;Alias=CR31603-RA;Dbxref=FlyBase_Annotation_IDs:CR31603-RA;score_text=Weakly" tRNAscann="Asp_chr2L_trna13" - - "Rfam_10.0=RF00005;tRNA;ABJB010887279.1/1267-1338\|5.5e-27" "Noncode_2.0=n112842_u111940_DQ604839_piRNA_Norway\|6.9e-08" "unique_Noncode_2.0=u111940_piRNA_Norway\|6.0e-08" -	1551	8,541,760 – 8,541,847	+	10	91	83.41	-1.31	0.98	0.959413
1132	dm3.chr2L	8,541,760 – 8,541,847		1552	8,541,760 – 8,541,847	-	10	91	83.41	-0.96	0.93	0.861508
1133	dm3.chr2L	8,552,793 – 8,552,897	- - - intron="intron;ID=intron_FBgn0011259:4_FBgn0011259:5;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1553	8,552,793 – 8,552,897	+	5	111	69.06	-1.90	0.37	0.705128
1134	dm3.chr2L	8,557,169 – 8,557,270	- - - intron="intron;ID=intron_FBgn0011259:4_FBgn0011259:5;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1554	8,557,169 – 8,557,270	+	11	118	71.39	-0.99	0.52	0.555293
1135	dm3.chr2L	8,561,025 – 8,561,142	- - - intron="intron;ID=intron_FBgn0011259:4_FBgn0011259:5;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1555	8,561,025 – 8,561,119	+	12	111	71.98	-1.58	0.44	0.806885
				1556	8,561,025 – 8,561,119	-	12	111	71.98	-1.45	0.50	0.883210
				1557	8,561,046 – 8,561,142	-	11	125	74.01	-1.40	0.56	0.730207
1136	dm3.chr2L	8,563,650 – 8,563,720	- - - intron="intron;ID=intron_FBgn0011259:4_FBgn0011259:5;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1558	8,563,650 – 8,563,720	+	6	83	67.48	-0.97	0.49	0.518750
1137	dm3.chr2L	8,570,028 – 8,570,140	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1559	8,570,028 – 8,570,140	+	5	112	86.43	-1.84	0.81	0.880752
1138	dm3.chr2L	8,577,334 – 8,577,386	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1560	8,577,334 – 8,577,386	+	5	52	85.77	-1.47	0.78	0.579977
1139	dm3.chr2L	8,583,122 – 8,583,232	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1561	8,583,122 – 8,583,232	+	12	117	71.82	-0.38	0.64	0.671865
1140	dm3.chr2L	8,585,640 – 8,585,746	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1562	8,585,640 – 8,585,746	+	8	114	81.63	-2.21	0.52	0.733460
1141	dm3.chr2L	8,586,294 – 8,586,386	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1563	8,586,294 – 8,586,386	-	9	120	64.71	-2.44	0.27	0.913334
1142	dm3.chr2L	8,591,587 – 8,591,653	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1564	8,591,587 – 8,591,653	-	5	66	85.89	-1.77	0.74	0.718077
1143	dm3.chr2L	8,591,919 – 8,592,028	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1565	8,591,919 – 8,592,028	+	6	117	73.79	-2.33	0.43	0.919889
1143	dm3.chr2L	8,591,919 – 8,592,028		1566	8,591,919 – 8,592,028	-	6	117	73.79	-1.71	0.47	0.688415
1144	dm3.chr2L	8,605,848 – 8,605,954	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1567	8,605,848 – 8,605,954	+	3	107	55.59	-1.40	0.56	0.951390
1145	dm3.chr2L	8,613,212 – 8,613,291	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1568	8,613,212 – 8,613,291	+	8	81	80.72	-2.19	0.55	0.867462
1146	dm3.chr2L	8,614,383 – 8,614,459	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1569	8,614,383 – 8,614,459	-	4	79	62.00	-0.21	0.63	0.601915
1147	dm3.chr2L	8,616,880 – 8,617,006	- - - intron="intron;ID=intron_FBgn0011259:5_FBgn0011259:6;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1570	8,616,880 – 8,617,006	+	5	135	79.82	-1.60	0.65	0.720970
1148	dm3.chr2L	8,634,404 – 8,634,523	- - - intron="intron;ID=intron_FBgn0011259:6_FBgn0011259:7;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1571	8,634,404 – 8,634,504	+	11	120	64.62	-1.30	0.37	0.742810
1148	dm3.chr2L	8,634,404 – 8,634,523		1572	8,634,431 – 8,634,523	+	8	118	75.92	-1.75	0.57	0.803635
1149	dm3.chr2L	8,657,884 – 8,657,937	- - - intron="intron;ID=intron_FBgn0011259:14_FBgn0011259:15;Name=Sema-1a-in;Parent=FBtr0079691,FBtr0303877,FBtr0303878,FBtr0303879;parent_type=mRNA" - - - -	1573	8,657,884 – 8,657,937	+	5	53	93.96	-1.03	1.01	0.831990
1150	dm3.chr2L	8,679,084 – 8,679,203	FBnoncoding="tRNA;ID=FBtr0079728;Name=tRNA:CR31889-RA;Parent=FBgn0051889;Alias=CR31889-RA;Dbxref=FlyBase_Annotation_IDs:CR31889-RA;score_text=Weakly" tRNAscann="Asp_chr2L_trna16" - intron="intron;ID=intron_CG9287:1_CG9287:2;Name=CG9287-in;Parent=FBtr0079753;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010887279.1/1267-1338\|8.1e-27" "Noncode_2.0=n112842_u111940_DQ604839_piRNA_Norway\|1.0e-07" "unique_Noncode_2.0=u111940_piRNA_Norway\|8.7e-08" -	1574	8,679,084 – 8,679,203	+	10	123	76.95	-1.15	0.80	0.939565
1150	dm3.chr2L	8,679,084 – 8,679,203		1575	8,679,084 – 8,679,203	-	10	123	76.95	-1.19	0.77	0.936586
1151	dm3.chr2L	8,698,014 – 8,698,172	- - - - - - - -	1576	8,698,014 – 8,698,132	+	6	118	77.53	-2.38	0.53	0.956894
				1577	8,698,052 – 8,698,172	+	6	120	80.48	-2.77	0.55	0.979304
				1578	8,698,052 – 8,698,172	-	6	120	80.48	-2.35	0.43	0.620716
1152	dm3.chr2L	8,698,525 – 8,698,642	- - - - - - - -	1579	8,698,525 – 8,698,642	-	5	120	85.73	-2.32	0.68	0.880160
1153	dm3.chr2L	8,699,678 – 8,699,779	- - - - - - - -	1580	8,699,678 – 8,699,779	+	12	117	86.60	-1.90	0.66	0.566211
1154	dm3.chr2L	8,703,736 – 8,703,830	- - - - - - - -	1581	8,703,736 – 8,703,830	+	10	109	77.87	-1.38	0.64	0.807226
1154	dm3.chr2L	8,703,736 – 8,703,830	- - - - - - - -	1582	8,703,736 – 8,703,830	-	10	109	77.87	-2.21	0.51	0.938086
1155	dm3.chr2L	8,704,059 – 8,704,140	- - - - - - - -	1583	8,704,059 – 8,704,140	+	6	95	63.63	-0.81	0.58	0.869530
1156	dm3.chr2L	8,715,726 – 8,715,819	- - - intron="intron;ID=intron_FBgn0003209:9_FBgn0003209:8;Name=raw-in;Parent=FBtr0079746,FBtr0303868;parent_type=mRNA" - - - -	1584	8,715,726 – 8,715,819	-	8	107	75.84	-1.67	0.60	0.896378
1157	dm3.chr2L	8,726,674 – 8,726,797	- - - intron="intron;ID=intron_FBgn0003209:9_FBgn0003209:8;Name=raw-in;Parent=FBtr0079746,FBtr0303868;parent_type=mRNA" - - - -	1585	8,726,674 – 8,726,785	+	3	116	54.23	-2.12	0.30	0.836352
1157	dm3.chr2L	8,726,674 – 8,726,797		1586	8,726,681 – 8,726,797	+	3	116	56.03	-2.24	0.30	0.862986
1158	dm3.chr2L	8,732,721 – 8,732,825	- - - intron="intron;ID=intron_FBgn0003209:9_FBgn0003209:8;Name=raw-in;Parent=FBtr0079746,FBtr0303868;parent_type=mRNA" - - - -	1587	8,732,721 – 8,732,825	-	6	104	95.83	-4.02	0.88	0.997833
1159	dm3.chr2L	8,733,746 – 8,733,838	- - - intron="intron;ID=intron_FBgn0003209:9_FBgn0003209:8;Name=raw-in;Parent=FBtr0079746,FBtr0303868;parent_type=mRNA" - - - -	1588	8,733,746 – 8,733,838	+	6	109	73.77	-1.55	0.49	0.549002
1160	dm3.chr2L	8,733,900 – 8,733,992	- - - intron="intron;ID=intron_FBgn0003209:9_FBgn0003209:8;Name=raw-in;Parent=FBtr0079746,FBtr0303868;parent_type=mRNA" - - - -	1589	8,733,900 – 8,733,992	+	6	117	68.51	-2.14	0.61	0.994357
1160	dm3.chr2L	8,733,900 – 8,733,992		1590	8,733,900 – 8,733,992	-	6	117	68.51	-1.53	0.65	0.972039
1161	dm3.chr2L	8,743,210 – 8,743,336	- - - - - - - -	1591	8,743,210 – 8,743,313	+	12	117	71.05	-1.32	0.57	0.931454
1161	dm3.chr2L	8,743,210 – 8,743,336	- - - - - - - -	1592	8,743,235 – 8,743,336	-	11	120	71.54	-1.20	0.49	0.510348
1162	dm3.chr2L	8,743,892 – 8,743,992	- - - - - - - -	1593	8,743,892 – 8,743,992	+	10	115	78.29	-1.26	0.60	0.555578
1163	dm3.chr2L	8,746,827 – 8,746,924	- - - - - - - -	1594	8,746,827 – 8,746,924	-	8	106	85.89	-1.51	0.81	0.801919
1164	dm3.chr2L	8,753,997 – 8,754,096	- - - - - - - -	1595	8,753,997 – 8,754,096	+	11	120	78.31	-1.79	0.60	0.877592
1165	dm3.chr2L	8,759,027 – 8,759,090	- - - - - - - -	1596	8,759,027 – 8,759,090	+	12	67	88.56	-1.76	0.75	0.684202
1165	dm3.chr2L	8,759,027 – 8,759,090	- - - - - - - -	1597	8,759,027 – 8,759,090	-	12	67	88.56	-2.32	0.58	0.592227
1166	dm3.chr2L	8,762,113 – 8,762,203	- - - - - - - -	1598	8,762,113 – 8,762,203	-	8	104	79.34	-1.68	0.56	0.538535
1167	dm3.chr2L	8,764,695 – 8,764,793	- - - - - - - -	1599	8,764,695 – 8,764,793	-	5	108	81.86	-0.93	0.85	0.567294
1168	dm3.chr2L	8,793,472 – 8,793,581	- - - - - - - -	1600	8,793,472 – 8,793,581	-	6	114	83.57	-2.12	0.60	0.781420
1169	dm3.chr2L	8,794,640 – 8,794,741	- - - - - - - -	1601	8,794,640 – 8,794,741	-	11	112	80.88	-1.17	0.74	0.650914
1170	dm3.chr2L	8,803,072 – 8,803,166	- - - - - - - -	1602	8,803,072 – 8,803,166	+	5	107	74.09	-1.33	0.59	0.626414
1170	dm3.chr2L	8,803,072 – 8,803,166	- - - - - - - -	1603	8,803,072 – 8,803,166	-	5	107	74.09	-1.65	0.54	0.735478
1171	dm3.chr2L	8,805,733 – 8,805,845	- - - - - - - -	1604	8,805,733 – 8,805,845	-	6	113	93.59	-2.64	0.86	0.974540
1172	dm3.chr2L	8,807,528 – 8,807,621	- - - - - - - -	1605	8,807,528 – 8,807,621	-	12	118	72.55	-2.22	0.36	0.776825
1173	dm3.chr2L	8,812,315 – 8,812,417	- - - - - - - -	1606	8,812,315 – 8,812,417	+	11	113	74.09	-1.07	0.68	0.910619
1174	dm3.chr2L	8,822,341 – 8,822,439	- - - - - - - -	1607	8,822,341 – 8,822,439	-	11	106	92.93	-1.67	0.99	0.965090
1175	dm3.chr2L	8,825,927 – 8,826,026	- - - - - - - -	1608	8,825,927 – 8,826,026	+	10	121	68.11	-0.78	0.49	0.685487
1176	dm3.chr2L	8,838,832 – 8,838,900	- - - - - - - -	1609	8,838,832 – 8,838,900	-	5	72	68.63	-1.23	0.58	0.882242
1177	dm3.chr2L	8,844,511 – 8,844,567	- - - - - - - -	1610	8,844,511 – 8,844,567	-	6	65	68.36	-1.70	0.35	0.500000
1178	dm3.chr2L	8,849,393 – 8,849,495	- - - - - - - -	1611	8,849,393 – 8,849,495	+	8	106	73.98	-1.31	0.52	0.638503
1179	dm3.chr2L	8,856,436 – 8,856,527	- - - - - - - -	1612	8,856,436 – 8,856,527	+	12	107	86.73	-1.68	0.71	0.618676
1180	dm3.chr2L	8,861,096 – 8,861,222	- - - - - - - -	1613	8,861,096 – 8,861,191	+	11	111	79.95	-1.89	0.82	0.982522
1180	dm3.chr2L	8,861,096 – 8,861,222	- - - - - - - -	1614	8,861,126 – 8,861,222	+	6	106	80.19	-1.74	0.61	0.724904
1181	dm3.chr2L	8,864,117 – 8,864,233	- - CDS="CDS;ID=CDS_FBgn0052987:1_825;Name=CG32987-cds;Parent=FBtr0079735;parent_type=mRNA" - - - - -	1615	8,864,117 – 8,864,233	-	7	116	64.33	-1.81	0.29	0.817803
1182	dm3.chr2L	8,867,760 – 8,867,858	- - - - - - - -	1616	8,867,760 – 8,867,858	+	7	105	66.64	-1.24	0.46	0.813335
1183	dm3.chr2L	8,868,867 – 8,868,932	- - - - - - - -	1617	8,868,867 – 8,868,932	-	5	65	69.69	-1.31	0.51	0.735027
1184	dm3.chr2L	8,869,593 – 8,869,650	- - - - - - - -	1618	8,869,593 – 8,869,650	+	4	57	57.44	-1.12	0.53	0.947562
1184	dm3.chr2L	8,869,593 – 8,869,650	- - - - - - - -	1619	8,869,593 – 8,869,650	-	4	57	57.44	-1.01	0.58	0.960626
1185	dm3.chr2L	8,876,054 – 8,876,169	- - - - - - - -	1620	8,876,054 – 8,876,169	+	10	120	66.61	-1.10	0.52	0.931742
1185	dm3.chr2L	8,876,054 – 8,876,169	- - - - - - - -	1621	8,876,054 – 8,876,169	-	10	120	66.61	-0.35	0.55	0.547333
1186	dm3.chr2L	8,879,431 – 8,879,523	- - - - - - - -	1622	8,879,431 – 8,879,523	-	11	122	66.38	-2.23	0.46	0.991417
1187	dm3.chr2L	8,886,357 – 8,886,449	- - - - - - - -	1623	8,886,357 – 8,886,449	+	5	104	82.55	-2.23	0.59	0.821857
1187	dm3.chr2L	8,886,357 – 8,886,449	- - - - - - - -	1624	8,886,357 – 8,886,449	-	5	104	82.55	-1.63	0.78	0.857622
1188	dm3.chr2L	8,894,098 – 8,894,189	- - - - - - - -	1625	8,894,098 – 8,894,189	+	8	114	73.63	-0.59	0.74	0.583263
1189	dm3.chr2L	8,913,835 – 8,913,935	- - - intron="intron;ID=intron_FBgn0085427:3_FBgn0085427:4;Name=CG34398-in;Parent=FBtr0303889;parent_type=mRNA" - - - -	1626	8,913,835 – 8,913,935	+	11	100	76.14	-2.22	0.38	0.842443
1190	dm3.chr2L	8,917,581 – 8,917,635	- - - intron="intron;ID=intron_FBgn0085427:6_FBgn0085427:7;Name=CG34398-in;Parent=FBtr0112648,FBtr0112649,FBtr0303890,FBtr0303893,FBtr0303894;parent_type=mRNA" - - - -	1627	8,917,581 – 8,917,635	-	5	54	93.70	-2.39	0.98	0.990728
1191	dm3.chr2L	8,922,390 – 8,922,483	- - - intron="intron;ID=intron_FBgn0085427:6_FBgn0085427:7;Name=CG34398-in;Parent=FBtr0112648,FBtr0112649,FBtr0303890,FBtr0303893,FBtr0303894;parent_type=mRNA" - - - -	1628	8,922,390 – 8,922,483	+	8	105	79.06	-1.83	0.53	0.739295
1192	dm3.chr2L	8,935,698 – 8,935,812	- - - - - - - -	1629	8,935,698 – 8,935,812	+	5	114	73.84	-1.03	0.61	0.554277
1193	dm3.chr2L	8,940,834 – 8,940,933	- - - intron="intron;ID=intron_FBgn0032076:4_FBgn0032076:2;Name=CG9510-in;Parent=FBtr0299780;parent_type=mRNA" - - - -	1630	8,940,834 – 8,940,933	+	5	99	87.07	-2.23	0.69	0.817852
1193	dm3.chr2L	8,940,834 – 8,940,933		1631	8,940,834 – 8,940,933	-	5	99	87.07	-1.99	0.76	0.835488
1194	dm3.chr2L	8,975,288 – 8,975,383	- - - - - - - -	1632	8,975,288 – 8,975,383	+	3	97	87.94	-2.43	0.77	0.901868
1195	dm3.chr2L	8,988,266 – 8,988,378	- - - intron="intron;ID=intron_CG9552:1_CG9552:2;Name=rost-in;Parent=FBtr0079782;parent_type=mRNA" - - - -	1633	8,988,266 – 8,988,378	-	6	116	80.53	-2.58	0.64	0.984976
1196	dm3.chr2L	9,005,707 – 9,005,822	- - - - - - - -	1634	9,005,707 – 9,005,822	+	5	115	56.18	-1.09	0.35	0.775014
1197	dm3.chr2L	9,020,054 – 9,020,147	- - - - - - - -	1635	9,020,054 – 9,020,147	+	12	113	79.05	-1.37	0.62	0.661650
1198	dm3.chr2L	9,023,833 – 9,023,931	- - - - - - - -	1636	9,023,833 – 9,023,931	-	5	99	84.19	-3.14	0.77	0.995337
1199	dm3.chr2L	9,026,906 – 9,027,011	- - - - - - - -	1637	9,026,906 – 9,027,011	+	11	109	85.55	-1.59	0.69	0.594197
1199	dm3.chr2L	9,026,906 – 9,027,011	- - - - - - - -	1638	9,026,906 – 9,027,011	-	11	109	85.55	-2.04	0.55	0.517826
1200	dm3.chr2L	9,049,865 – 9,049,959	- - - - - - - -	1639	9,049,865 – 9,049,959	+	6	100	82.47	-2.22	0.80	0.979444
1201	dm3.chr2L	9,050,382 – 9,050,475	- - - - - - - -	1640	9,050,382 – 9,050,475	+	9	94	70.37	-0.82	0.58	0.823685
1202	dm3.chr2L	9,054,292 – 9,054,416	- - - intron="intron;ID=intron_FBgn0051708:4_FBgn0051708:3;Name=CG31708-in;Parent=FBtr0079777,FBtr0079776,FBtr0303881;parent_type=mRNA" - - - -	1641	9,054,292 – 9,054,416	+	12	151	55.51	-1.15	0.35	0.897105
1203	dm3.chr2L	9,057,335 – 9,057,386	- - - intron="intron;ID=intron_FBgn0051708:6_FBgn0051708:5;Name=CG31708-in;Parent=FBtr0079777,FBtr0079776,FBtr0303881;parent_type=mRNA" - - - -	1642	9,057,335 – 9,057,386	+	7	59	80.16	-1.59	0.59	0.538782
1204	dm3.chr2L	9,076,392 – 9,076,492	- - - - - - - -	1643	9,076,392 – 9,076,492	+	7	104	74.30	-1.84	0.47	0.861118
1205	dm3.chr2L	9,096,871 – 9,096,962	- - - - - - - -	1644	9,096,871 – 9,096,962	+	12	115	68.84	-2.16	0.28	0.761273
1206	dm3.chr2L	9,114,444 – 9,114,534	- - - - - - - -	1645	9,114,444 – 9,114,534	-	10	100	69.27	-1.44	0.51	0.959602
1207	dm3.chr2L	9,119,579 – 9,119,675	- - - - - - - -	1646	9,119,579 – 9,119,675	+	12	106	67.02	-2.00	0.35	0.950917
1207	dm3.chr2L	9,119,579 – 9,119,675	- - - - - - - -	1647	9,119,579 – 9,119,675	-	12	106	67.02	-2.26	0.30	0.940239
1208	dm3.chr2L	9,122,692 – 9,122,788	- - - - - - - -	1648	9,122,692 – 9,122,788	+	7	105	80.38	-2.07	0.50	0.722871
1208	dm3.chr2L	9,122,692 – 9,122,788	- - - - - - - -	1649	9,122,692 – 9,122,788	-	7	105	80.38	-2.36	0.39	0.534820
1209	dm3.chr2L	9,125,810 – 9,125,900	- - - - - - - -	1650	9,125,810 – 9,125,900	+	8	103	77.77	-0.96	0.72	0.559222
1210	dm3.chr2L	9,126,099 – 9,126,195	- - - intron="intron;ID=intron_FBgn0052982:1_FBgn0052982:2;Name=CG32982-in;Parent=FBtr0079771,FBtr0301039,FBtr0301040,FBtr0303888;parent_type=mRNA" - - - -	1651	9,126,099 – 9,126,195	+	9	108	74.35	-1.84	0.44	0.785235
1211	dm3.chr2L	9,156,354 – 9,156,476	- - - intron="intron;ID=intron_FBgn0052982:6_FBgn0052982:7;Name=CG32982-in;Parent=FBtr0110960,FBtr0079771,FBtr0301039,FBtr0301040,FBtr0303888;parent_type=mRNA" - - - -	1652	9,156,354 – 9,156,449	+	6	98	63.80	-1.64	0.40	0.933661
				1653	9,156,354 – 9,156,449	-	6	98	63.80	-2.84	0.45	0.999454
				1654	9,156,379 – 9,156,476	-	7	97	70.79	-1.11	0.53	0.827345
1212	dm3.chr2L	9,170,093 – 9,170,188	- - - intron="intron;ID=intron_FBgn0041092:1_FBgn0041092:5;Name=tai-in;Parent=FBtr0303871,FBtr0304974;parent_type=mRNA" - - - -	1655	9,170,093 – 9,170,188	+	10	107	76.73	-2.02	0.38	0.570964
1213	dm3.chr2L	9,195,211 – 9,195,330	- - - intron="intron;ID=intron_FBgn0041092:5_FBgn0041092:6;Name=tai-in;Parent=FBtr0303870,FBtr0303871,FBtr0303872,FBtr0303873,FBtr0304974;parent_type=mRNA" - - - -	1656	9,195,211 – 9,195,330	+	8	120	73.98	-1.27	0.67	0.925693
1214	dm3.chr2L	9,201,430 – 9,201,543	- - - intron="intron;ID=intron_FBgn0041092:5_FBgn0041092:6;Name=tai-in;Parent=FBtr0303870,FBtr0303871,FBtr0303872,FBtr0303873,FBtr0304974;parent_type=mRNA" - - - -	1657	9,201,430 – 9,201,543	+	6	113	79.82	-1.27	0.66	0.578731
1215	dm3.chr2L	9,205,552 – 9,205,644	- - - intron="intron;ID=intron_FBgn0041092:5_FBgn0041092:6;Name=tai-in;Parent=FBtr0303870,FBtr0303871,FBtr0303872,FBtr0303873,FBtr0304974;parent_type=mRNA" - - - -	1658	9,205,552 – 9,205,644	-	9	101	71.96	-1.06	0.55	0.719407
1216	dm3.chr2L	9,213,149 – 9,213,246	- - - intron="intron;ID=intron_FBgn0041092:5_FBgn0041092:6;Name=tai-in;Parent=FBtr0303870,FBtr0303871,FBtr0303872,FBtr0303873,FBtr0304974;parent_type=mRNA" - - - -	1659	9,213,149 – 9,213,246	+	5	98	84.19	-2.04	0.65	0.644479
1217	dm3.chr2L	9,213,546 – 9,213,643	- - - intron="intron;ID=intron_FBgn0041092:5_FBgn0041092:6;Name=tai-in;Parent=FBtr0303870,FBtr0303871,FBtr0303872,FBtr0303873,FBtr0304974;parent_type=mRNA" - - - -	1660	9,213,546 – 9,213,643	+	6	106	80.95	-2.36	0.47	0.668525
1218	dm3.chr2L	9,216,087 – 9,216,180	- - - intron="intron;ID=intron_FBgn0041092:5_FBgn0041092:6;Name=tai-in;Parent=FBtr0303870,FBtr0303871,FBtr0303872,FBtr0303873,FBtr0304974;parent_type=mRNA" - - - -	1661	9,216,087 – 9,216,180	+	3	93	94.27	-1.97	0.83	0.650380
1218	dm3.chr2L	9,216,087 – 9,216,180		1662	9,216,087 – 9,216,180	-	3	93	94.27	-2.19	0.86	0.871314
1219	dm3.chr2L	9,234,095 – 9,234,209	- - CDS="CDS;ID=CDS_FBgn0041092:6_857;Name=tai-cds;Parent=FBtr0304974;parent_type=mRNA" - - - - -	1663	9,234,095 – 9,234,209	+	4	120	73.42	-1.15	0.65	0.558959
1219	dm3.chr2L	9,234,095 – 9,234,209		1664	9,234,095 – 9,234,209	-	4	120	73.42	-1.51	0.71	0.905947
1220	dm3.chr2L	9,234,473 – 9,234,580	- - CDS="CDS;ID=CDS_FBgn0041092:6_857;Name=tai-cds;Parent=FBtr0304974;parent_type=mRNA" - - - - -	1665	9,234,473 – 9,234,580	+	11	107	74.23	-0.99	0.48	0.518440
1221	dm3.chr2L	9,236,519 – 9,236,604	FBnoncoding="tRNA;ID=FBtr0079820;Name=tRNA:CR31885-RA;Parent=FBgn0051885;Alias=CR31885-RA;Dbxref=FlyBase_Annotation_IDs:CR31885-RA;score_text=Weakly" tRNAscann="Thr_chr2L_trna29" - intron="intron;ID=intron_FBgn0041092:7_FBgn0041092:8;Name=tai-in;Parent=FBtr0303870,FBtr0303871,FBtr0303872,FBtr0303873,FBtr0304974;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAJJ01000411.1/14125-14198\|8.4e-26" - - "mirBase_v16=hsa-mir-3676\|3.5e-16"	1666	9,236,519 – 9,236,604	+	12	85	91.71	-1.63	0.92	0.912472
1222	dm3.chr2L	9,253,105 – 9,253,157	- - - intron="intron;ID=intron_FBgn0028433:1_FBgn0028433:7;Name=Ggamma30A-in;Parent=FBtr0301856;parent_type=mRNA" - - - -	1667	9,253,105 – 9,253,157	+	6	57	67.23	-1.10	0.55	0.914116
1222	dm3.chr2L	9,253,105 – 9,253,157		1668	9,253,105 – 9,253,157	-	6	57	67.23	-0.73	0.64	0.892886
1223	dm3.chr2L	9,266,541 – 9,266,644	- - - intron="intron;ID=intron_FBgn0028433:7_FBgn0028433:8;Name=Ggamma30A-in;Parent=FBtr0301856;parent_type=mRNA" - - - -	1669	9,266,541 – 9,266,644	+	5	113	73.57	-2.06	0.46	0.844675
1224	dm3.chr2L	9,280,764 – 9,280,898	- - - intron="intron;ID=intron_FBgn0028433:8_FBgn0028433:10;Name=Ggamma30A-in;Parent=FBtr0079795,FBtr0079796,FBtr0079797,FBtr0301856,FBtr0303895;parent_type=mRNA" - - - -	1670	9,280,764 – 9,280,862	+	5	98	86.41	-2.02	0.84	0.940113
				1671	9,280,764 – 9,280,862	-	5	98	86.41	-2.19	0.77	0.916220
				1672	9,280,799 – 9,280,898	+	6	107	81.91	-1.66	0.62	0.519092
1225	dm3.chr2L	9,285,833 – 9,285,923	- - - intron="intron;ID=intron_FBgn0028433:8_FBgn0028433:10;Name=Ggamma30A-in;Parent=FBtr0079795,FBtr0079796,FBtr0079797,FBtr0301856,FBtr0303895;parent_type=mRNA" - - - -	1673	9,285,833 – 9,285,923	+	4	93	81.06	-2.81	0.61	0.973155
1226	dm3.chr2L	9,286,419 – 9,286,520	- - - intron="intron;ID=intron_FBgn0028433:8_FBgn0028433:10;Name=Ggamma30A-in;Parent=FBtr0079795,FBtr0079796,FBtr0079797,FBtr0301856,FBtr0303895;parent_type=mRNA" - - - -	1674	9,286,419 – 9,286,520	+	7	107	70.60	-2.25	0.38	0.896950
1227	dm3.chr2L	9,297,994 – 9,298,085	- - - - - - - -	1675	9,297,994 – 9,298,085	-	7	102	62.65	-1.19	0.34	0.587427
1228	dm3.chr2L	9,322,500 – 9,322,609	- - - - - - - -	1676	9,322,500 – 9,322,609	+	6	111	88.45	-2.44	0.63	0.764009
1229	dm3.chr2L	9,337,553 – 9,337,610	- - - intron="intron;ID=intron_FBgn0026439:2_FBgn0026439:4;Name=Eaat1-in;Parent=FBtr0079801;parent_type=mRNA" - - - -	1677	9,337,553 – 9,337,610	-	6	57	71.58	-1.23	0.56	0.856050
1230	dm3.chr2L	9,338,814 – 9,338,876	- - CDS="CDS;ID=CDS_FBgn0026439:8_807;Name=Eaat1-cds;Parent=FBtr0079800,FBtr0079801,FBtr0079802,FBtr0303876;parent_type=mRNA" - - - - -	1678	9,338,814 – 9,338,876	-	11	62	75.54	-0.87	0.51	0.500000
1231	dm3.chr2L	9,346,316 – 9,346,409	- - - - - - - -	1679	9,346,316 – 9,346,409	-	4	111	82.25	-0.63	1.02	0.780939
1232	dm3.chr2L	9,363,968 – 9,364,060	- - - - - - - -	1680	9,363,968 – 9,364,060	+	8	114	59.13	-1.08	0.38	0.734031
1232	dm3.chr2L	9,363,968 – 9,364,060	- - - - - - - -	1681	9,363,968 – 9,364,060	-	8	114	59.13	-1.87	0.27	0.810843
1233	dm3.chr2L	9,365,674 – 9,365,741	- - - - - - - -	1682	9,365,674 – 9,365,741	+	5	67	93.43	-2.23	0.75	0.650009
1234	dm3.chr2L	9,369,884 – 9,369,978	- - - - - - - -	1683	9,369,884 – 9,369,978	+	9	95	75.30	-2.69	0.57	0.998076
1235	dm3.chr2L	9,374,539 – 9,374,631	- - - intron="intron;ID=intron_FBgn0085395:2_FBgn0085395:1;Name=Shawl-in;Parent=FBtr0112591;parent_type=mRNA" - - - -	1684	9,374,539 – 9,374,631	+	5	102	77.85	-1.58	0.60	0.636080
1236	dm3.chr2L	9,391,840 – 9,391,932	- - - - - - - -	1685	9,391,840 – 9,391,932	+	7	98	71.63	-0.90	0.59	0.769163
1237	dm3.chr2L	9,392,128 – 9,392,210	- - - - - - - -	1686	9,392,128 – 9,392,210	+	7	94	72.02	-1.18	0.54	0.705856
1238	dm3.chr2L	9,392,939 – 9,393,060	- - - - - - - -	1687	9,392,939 – 9,393,045	+	8	117	66.76	-0.65	0.55	0.753971
				1688	9,392,939 – 9,393,045	-	8	117	66.76	-1.69	0.69	0.997563
				1689	9,392,970 – 9,393,060	-	12	118	70.83	-1.31	0.59	0.917016
1239	dm3.chr2L	9,394,701 – 9,394,806	- - - - - - - -	1690	9,394,701 – 9,394,806	-	3	109	50.00	-1.80	0.33	0.915785
1240	dm3.chr2L	9,398,297 – 9,398,430	- - - - - - - -	1691	9,398,297 – 9,398,394	-	6	107	75.03	-1.70	0.54	0.836538
				1692	9,398,324 – 9,398,430	+	6	112	82.48	-2.22	0.58	0.831069
				1693	9,398,324 – 9,398,430	-	6	112	82.48	-2.27	0.73	0.971073
1241	dm3.chr2L	9,401,187 – 9,401,288	- - - - - - - -	1694	9,401,187 – 9,401,288	-	8	114	73.16	-1.69	0.42	0.615921
1242	dm3.chr2L	9,406,299 – 9,406,417	- - - - - - - -	1695	9,406,299 – 9,406,417	-	7	140	68.96	-1.85	0.37	0.781614
1243	dm3.chr2L	9,411,114 – 9,411,216	- - - - - - - -	1696	9,411,114 – 9,411,216	-	7	112	78.77	-1.66	0.63	0.854273
1244	dm3.chr2L	9,411,560 – 9,411,629	- - - - - - - -	1697	9,411,560 – 9,411,629	-	8	82	62.63	-1.64	0.30	0.587354
1245	dm3.chr2L	9,411,742 – 9,411,841	- - - - - - - -	1698	9,411,742 – 9,411,841	+	6	114	76.60	-1.82	0.49	0.616796
1246	dm3.chr2L	9,417,570 – 9,417,672	- - - intron="intron;ID=intron_FBgn0032116:3_FBgn0032116:4;Name=CG3759-in;Parent=FBtr0303896;parent_type=mRNA" - - - -	1699	9,417,570 – 9,417,672	-	6	111	73.05	-1.64	0.59	0.935451
1247	dm3.chr2L	9,445,139 – 9,445,239	- - - - - - - -	1700	9,445,139 – 9,445,239	-	5	100	88.26	-1.81	0.77	0.683620
1248	dm3.chr2L	9,446,831 – 9,446,923	- - - - - - - -	1701	9,446,831 – 9,446,923	+	5	99	87.07	-2.67	0.75	0.977125
1249	dm3.chr2L	9,463,507 – 9,463,604	- - - - - - - -	1702	9,463,507 – 9,463,604	+	4	97	84.36	-2.46	0.85	0.986987
1249	dm3.chr2L	9,463,507 – 9,463,604	- - - - - - - -	1703	9,463,507 – 9,463,604	-	4	97	84.36	-1.93	0.80	0.905016
1250	dm3.chr2L	9,463,975 – 9,464,040	- - - - - - - -	1704	9,463,975 – 9,464,040	-	4	65	83.33	-1.19	0.83	0.585963
1251	dm3.chr2L	9,467,652 – 9,467,743	- - - - - - - -	1705	9,467,652 – 9,467,743	+	5	100	83.56	-2.42	0.69	0.947884
1251	dm3.chr2L	9,467,652 – 9,467,743	- - - - - - - -	1706	9,467,652 – 9,467,743	-	5	100	83.56	-2.45	0.63	0.910146
1252	dm3.chr2L	9,467,947 – 9,468,029	- - - - - - - -	1707	9,467,947 – 9,468,029	-	6	82	87.42	-2.77	0.52	0.772395
1253	dm3.chr2L	9,497,971 – 9,498,074	- - - intron="intron;ID=intron_FBgn0032120:4_FBgn0032120:5;Name=CG33298-in;Parent=FBtr0301064,FBtr0301065;parent_type=mRNA" - - - -	1708	9,497,971 – 9,498,074	-	6	124	63.33	-1.23	0.51	0.947606
1254	dm3.chr2L	9,499,486 – 9,499,557	- - - intron="intron;ID=intron_FBgn0032120:4_FBgn0032120:5;Name=CG33298-in;Parent=FBtr0301064,FBtr0301065;parent_type=mRNA" - - - -	1709	9,499,486 – 9,499,557	+	6	84	80.81	-1.66	0.70	0.863931
1254	dm3.chr2L	9,499,486 – 9,499,557		1710	9,499,486 – 9,499,557	-	6	84	80.81	-2.12	0.66	0.950854
1255	dm3.chr2L	9,503,871 – 9,503,971	- - CDS="CDS;ID=CDS_FBgn0032120:5_788;Name=CG33298-cds;Parent=FBtr0301064,FBtr0301065;parent_type=mRNA" - - - - -	1711	9,503,871 – 9,503,971	+	6	103	81.06	-1.61	0.77	0.906081
1256	dm3.chr2L	9,508,593 – 9,508,691	- - - intron="intron;ID=intron_FBgn0032120:5_FBgn0032120:6;Name=CG33298-in;Parent=FBtr0089854,FBtr0089853,FBtr0301064,FBtr0301065;parent_type=mRNA" - - - -	1712	9,508,593 – 9,508,691	-	5	99	76.36	-0.66	0.83	0.569290
1257	dm3.chr2L	9,527,929 – 9,528,031	- - - intron="intron;ID=intron_FBgn0032123:4_FBgn0032123:5;Name=Oatp30B-in;Parent=FBtr0079825,FBtr0079826,FBtr0301909;parent_type=mRNA" - - - -	1713	9,527,929 – 9,528,031	+	4	104	97.26	-2.47	0.99	0.989789
1257	dm3.chr2L	9,527,929 – 9,528,031		1714	9,527,929 – 9,528,031	-	4	104	97.26	-2.34	0.91	0.944513
1258	dm3.chr2L	9,543,793 – 9,543,846	- - - - - - - -	1715	9,543,793 – 9,543,846	+	3	53	93.71	-1.32	0.97	0.815940
1259	dm3.chr2L	9,549,572 – 9,549,690	- - CDS="CDS;ID=CDS_FBgn0032129:2_777;Name=jp-cds;Parent=FBtr0113030;parent_type=mRNA" - - - - -	1716	9,549,572 – 9,549,690	+	14	126	69.95	-1.04	0.43	0.677444
1260	dm3.chr2L	9,582,238 – 9,582,370	- - - - - - - -	1717	9,582,238 – 9,582,337	-	7	101	68.31	-1.71	0.52	0.984566
1260	dm3.chr2L	9,582,238 – 9,582,370	- - - - - - - -	1718	9,582,277 – 9,582,370	-	7	98	71.54	-1.51	0.39	0.536562
1261	dm3.chr2L	9,613,659 – 9,613,750	- - - intron="intron;ID=intron_FBgn0040070:3_FBgn0040070:4;Name=Trx-2-in;Parent=FBtr0079839;parent_type=mRNA" - - - -	1719	9,613,659 – 9,613,750	+	7	112	68.97	-1.28	0.46	0.587818
1262	dm3.chr2L	9,617,896 – 9,618,012	- - - intron="intron;ID=intron_FBgn0032135:3_FBgn0032135:4;Name=GlcAT-S-in;Parent=FBtr0302199;parent_type=mRNA" - - - -	1720	9,617,896 – 9,618,003	-	6	120	79.16	-1.80	0.55	0.589483
1262	dm3.chr2L	9,617,896 – 9,618,012		1721	9,617,905 – 9,618,012	+	6	120	81.26	-2.12	0.65	0.908957
1263	dm3.chr2L	9,624,754 – 9,624,870	- - - - - - - -	1722	9,624,754 – 9,624,870	-	5	117	71.48	-1.47	0.44	0.521080
1264	dm3.chr2L	9,625,414 – 9,625,475	- - - - - - - -	1723	9,625,414 – 9,625,475	+	7	61	69.56	-1.35	0.39	0.647029
1265	dm3.chr2L	9,626,885 – 9,626,981	- - - - - - - -	1724	9,626,885 – 9,626,981	+	6	102	67.12	-1.80	0.33	0.694850
1265	dm3.chr2L	9,626,885 – 9,626,981	- - - - - - - -	1725	9,626,885 – 9,626,981	-	6	102	67.12	-1.84	0.38	0.893257
1266	dm3.chr2L	9,627,067 – 9,627,135	- - - - - - - -	1726	9,627,067 – 9,627,135	+	5	81	67.86	-1.15	0.57	0.841984
1267	dm3.chr2L	9,632,716 – 9,632,809	- - - - - - - -	1727	9,632,716 – 9,632,809	-	7	105	62.71	-1.59	0.51	0.994312
1268	dm3.chr2L	9,640,837 – 9,640,947	- - - intron="intron;ID=intron_FBgn0032136:1_FBgn0032136:2;Name=CG15828-in;Parent=FBtr0303874;parent_type=mRNA" - - - -	1728	9,640,837 – 9,640,947	+	4	111	77.98	-2.17	0.63	0.930573
1269	dm3.chr2L	9,662,729 – 9,662,792	- - - - - - - -	1729	9,662,729 – 9,662,792	+	8	63	80.99	-2.40	0.74	0.993361
1270	dm3.chr2L	9,669,393 – 9,669,475	- - - - - - - -	1730	9,669,393 – 9,669,475	+	6	82	86.51	-3.34	0.77	0.996646
1270	dm3.chr2L	9,669,393 – 9,669,475	- - - - - - - -	1731	9,669,393 – 9,669,475	-	6	82	86.51	-2.55	0.60	0.840418
1271	dm3.chr2L	9,673,751 – 9,673,848	- - - - - - - -	1732	9,673,751 – 9,673,848	-	6	97	76.67	-1.95	0.59	0.934608
1272	dm3.chr2L	9,674,793 – 9,674,894	- - - - - - - -	1733	9,674,793 – 9,674,894	+	3	101	83.22	-2.16	0.86	0.962332
1272	dm3.chr2L	9,674,793 – 9,674,894	- - - - - - - -	1734	9,674,793 – 9,674,894	-	3	101	83.22	-1.68	0.81	0.739267
1273	dm3.chr2L	9,679,357 – 9,679,447	- - - - - - - -	1735	9,679,357 – 9,679,447	+	3	96	90.97	-2.32	0.71	0.593025
1274	dm3.chr2L	9,693,259 – 9,693,344	- - - intron="intron;ID=intron_FBgn0000273:3_FBgn0000273:1;Name=Pka-C1-in;Parent=FBtr0079852;parent_type=mRNA" - - - -	1736	9,693,259 – 9,693,344	-	6	94	74.26	-1.75	0.54	0.892477
1275	dm3.chr2L	9,705,100 – 9,705,193	- - - intron="intron;ID=intron_FBgn0051710:3_FBgn0051710:2;Name=CG31710-in;Parent=FBtr0079849;parent_type=mRNA" - - - -	1737	9,705,100 – 9,705,193	+	4	109	64.86	-1.48	0.43	0.654671
1276	dm3.chr2L	9,732,560 – 9,732,654	- - - intron="intron;ID=intron_FBgn0028704:9_FBgn0028704:8;Name=Nckx30C-in;Parent=FBtr0079926,FBtr0079928,FBtr0303908;parent_type=mRNA" - - - -	1738	9,732,560 – 9,732,654	+	8	110	91.52	-2.01	0.88	0.925917
1276	dm3.chr2L	9,732,560 – 9,732,654		1739	9,732,560 – 9,732,654	-	8	110	91.52	-1.62	0.99	0.959739
1277	dm3.chr2L	9,742,588 – 9,742,686	- - CDS="CDS;ID=CDS_FBgn0028704:12_847;Name=Nckx30C-cds;Parent=FBtr0303909;parent_type=mRNA" - - - - -	1740	9,742,588 – 9,742,686	+	6	110	66.79	-1.73	0.65	0.996085
1278	dm3.chr2L	9,744,687 – 9,744,758	- - - intron="intron;ID=intron_FBgn0028704:13_FBgn0028704:12;Name=Nckx30C-in;Parent=FBtr0079928;parent_type=mRNA" - - - -	1741	9,744,687 – 9,744,758	+	6	83	64.39	-0.57	0.49	0.608516
1279	dm3.chr2L	9,750,029 – 9,750,086	- - - - - - - -	1742	9,750,029 – 9,750,086	+	5	58	73.34	-1.26	0.57	0.671508
1280	dm3.chr2L	9,754,368 – 9,754,420	- - - - - - - -	1743	9,754,368 – 9,754,420	+	3	52	92.31	-1.97	0.93	0.939298
1281	dm3.chr2L	9,769,030 – 9,769,125	- - - - - - - -	1744	9,769,030 – 9,769,120	-	12	110	65.72	-1.76	0.28	0.681396
1281	dm3.chr2L	9,769,030 – 9,769,125	- - - - - - - -	1745	9,769,030 – 9,769,125	-	12	113	67.13	-1.90	0.29	0.748383
1282	dm3.chr2L	9,782,338 – 9,782,423	- - - - - - - -	1746	9,782,338 – 9,782,423	+	11	96	69.45	-1.34	0.40	0.692705
1283	dm3.chr2L	9,793,438 – 9,793,543	- - - - - - - -	1747	9,793,438 – 9,793,543	+	9	114	83.59	-1.50	0.68	0.538623
1283	dm3.chr2L	9,793,438 – 9,793,543	- - - - - - - -	1748	9,793,438 – 9,793,543	-	9	114	83.59	-2.50	0.84	0.992941
1284	dm3.chr2L	9,803,494 – 9,803,586	- - - intron="intron;ID=intron_FBgn0032151:6_FBgn0032151:5;Name=nAcRalpha-30D-in;Parent=FBtr0079912;parent_type=mRNA" - - - -	1749	9,803,494 – 9,803,586	-	8	110	79.43	-1.01	0.81	0.711306
1285	dm3.chr2L	9,807,995 – 9,808,045	- - - intron="intron;ID=intron_FBgn0032151:9_FBgn0032151:8;Name=nAcRalpha-30D-in;Parent=FBtr0079915,FBtr0079914,FBtr0079913,FBtr0079916,FBtr0079912,FBtr0303898;parent_type=mRNA" - - - -	1750	9,807,995 – 9,808,045	-	4	57	78.50	-3.25	0.75	0.997934
1286	dm3.chr2L	9,808,558 – 9,808,653	- - - intron="intron;ID=intron_FBgn0032151:9_FBgn0032151:8;Name=nAcRalpha-30D-in;Parent=FBtr0079915,FBtr0079914,FBtr0079913,FBtr0079916,FBtr0079912,FBtr0303898;parent_type=mRNA" - - - -	1751	9,808,558 – 9,808,653	+	7	98	73.23	-1.19	0.57	0.693021
1286	dm3.chr2L	9,808,558 – 9,808,653		1752	9,808,558 – 9,808,653	-	7	98	73.23	-1.56	0.51	0.788175
1287	dm3.chr2L	9,813,789 – 9,813,889	- - - intron="intron;ID=intron_FBgn0032151:10_FBgn0032151:9;Name=nAcRalpha-30D-in;Parent=FBtr0079915,FBtr0079914,FBtr0079913,FBtr0079916,FBtr0079912,FBtr0303898;parent_type=mRNA" - - - -	1753	9,813,789 – 9,813,889	-	9	104	68.15	-0.28	0.60	0.628501
1288	dm3.chr2L	9,814,002 – 9,814,096	- - - intron="intron;ID=intron_FBgn0032151:10_FBgn0032151:9;Name=nAcRalpha-30D-in;Parent=FBtr0079915,FBtr0079914,FBtr0079913,FBtr0079916,FBtr0079912,FBtr0303898;parent_type=mRNA" - - - -	1754	9,814,002 – 9,814,096	-	5	110	62.23	-1.40	0.37	0.704305
1289	dm3.chr2L	9,822,467 – 9,822,566	- - - intron="intron;ID=intron_FBgn0032151:12_FBgn0032151:11;Name=nAcRalpha-30D-in;Parent=FBtr0079913;parent_type=mRNA" - - - -	1755	9,822,467 – 9,822,566	+	5	101	71.70	-1.15	0.56	0.599408
1290	dm3.chr2L	9,834,175 – 9,834,231	- - - intron="intron;ID=intron_FBgn0032151:14_FBgn0032151:13;Name=nAcRalpha-30D-in;Parent=FBtr0079915,FBtr0079914,FBtr0079913,FBtr0079916,FBtr0079912,FBtr0303898;parent_type=mRNA" - - - -	1756	9,834,175 – 9,834,231	+	6	56	94.40	-1.11	0.93	0.524021
1291	dm3.chr2L	9,845,988 – 9,846,086	- - - intron="intron;ID=intron_FBgn0032151:14_FBgn0032151:13;Name=nAcRalpha-30D-in;Parent=FBtr0079915,FBtr0079914,FBtr0079913,FBtr0079916,FBtr0079912,FBtr0303898;parent_type=mRNA" - - - -	1757	9,845,988 – 9,846,086	+	9	110	65.17	-3.09	0.57	0.999926
1291	dm3.chr2L	9,845,988 – 9,846,086		1758	9,845,988 – 9,846,086	-	9	110	65.17	-4.18	0.73	0.999946
1292	dm3.chr2L	9,850,281 – 9,850,386	- - - intron="intron;ID=intron_FBgn0032151:14_FBgn0032151:13;Name=nAcRalpha-30D-in;Parent=FBtr0079915,FBtr0079914,FBtr0079913,FBtr0079916,FBtr0079912,FBtr0303898;parent_type=mRNA" - - - -	1759	9,850,281 – 9,850,386	-	6	117	86.03	-2.18	0.69	0.825448
1293	dm3.chr2L	9,864,347 – 9,864,416	- - - intron="intron;ID=intron_FBgn0032151:14_FBgn0032151:13;Name=nAcRalpha-30D-in;Parent=FBtr0079915,FBtr0079914,FBtr0079913,FBtr0079916,FBtr0079912,FBtr0303898;parent_type=mRNA" - - - -	1760	9,864,347 – 9,864,416	-	6	82	67.72	-1.18	0.47	0.858084
1294	dm3.chr2L	9,877,259 – 9,877,358	- - - - - - - -	1761	9,877,259 – 9,877,358	+	8	102	86.97	-2.94	0.73	0.987378
1294	dm3.chr2L	9,877,259 – 9,877,358	- - - - - - - -	1762	9,877,259 – 9,877,358	-	8	102	86.97	-2.35	0.76	0.948391
1295	dm3.chr2L	9,879,734 – 9,879,840	- - - intron="intron;ID=intron_FBgn0032151:17_FBgn0032151:15;Name=nAcRalpha-30D-in;Parent=FBtr0303898;parent_type=mRNA" - - - -	1763	9,879,734 – 9,879,840	-	11	116	73.26	-1.21	0.67	0.964987
1296	dm3.chr2L	9,882,824 – 9,882,928	- - - intron="intron;ID=intron_FBgn0032151:17_FBgn0032151:15;Name=nAcRalpha-30D-in;Parent=FBtr0303898;parent_type=mRNA" - - - -	1764	9,882,824 – 9,882,917	+	6	95	79.64	-1.35	0.70	0.728284
1296	dm3.chr2L	9,882,824 – 9,882,928		1765	9,882,832 – 9,882,928	+	6	96	79.37	-2.31	0.61	0.971992
1297	dm3.chr2L	9,885,555 – 9,885,678	- - - intron="intron;ID=intron_FBgn0032151:17_FBgn0032151:15;Name=nAcRalpha-30D-in;Parent=FBtr0303898;parent_type=mRNA" - - - -	1766	9,885,555 – 9,885,651	-	9	112	74.50	-1.39	0.76	0.971538
1297	dm3.chr2L	9,885,555 – 9,885,678		1767	9,885,586 – 9,885,678	-	7	105	66.97	-0.72	0.56	0.774332
1298	dm3.chr2L	9,903,113 – 9,903,223	- - CDS="CDS;ID=CDS_FBgn0053300:2_861;Name=Muc30E-cds;Parent=FBtr0305657;parent_type=mRNA" - - - - -	1768	9,903,113 – 9,903,223	+	6	118	64.68	-1.13	0.38	0.525915
1299	dm3.chr2L	9,917,448 – 9,917,650	- - CDS="CDS;ID=CDS_FBgn0025700:1_718;Name=CG5885-cds;Parent=FBtr0079900;parent_type=mRNA" - - - - -	1769	9,917,448 – 9,917,568	-	15	120	73.50	-2.29	0.23	0.545528
				1770	9,917,528 – 9,917,648	-	14	120	83.75	-3.10	0.52	0.988704
				1771	9,917,530 – 9,917,650	-	14	120	84.25	-2.79	0.52	0.961803
1300	dm3.chr2L	9,950,405 – 9,950,551	FBnoncoding="pre_miRNA;ID=FBtr0304394;Name=mir-87-RM;Parent=FBgn0262428;Alias=CR42983-RM;Dbxref=FlyBase_Annotation_IDs:CR42983-RM,miRBase:MI0000382" - - - "Rfam_10.0=RF00726;mir-87;AASW01042897.1/1205-1302\|8.5e-49" - - "mirBase_v16=dme-mir-87\|1.0e-51"	1772	9,950,405 – 9,950,516	+	12	117	82.19	-2.15	0.81	0.988689
				1773	9,950,405 – 9,950,516	-	12	117	82.19	-2.85	0.88	0.997912
				1774	9,950,438 – 9,950,551	+	12	115	74.43	-1.11	0.65	0.892680
				1775	9,950,438 – 9,950,551	-	12	115	74.43	-0.56	0.72	0.689595
1301	dm3.chr2L	9,951,003 – 9,951,099	- - - - - - - -	1776	9,951,003 – 9,951,099	+	6	102	86.40	-2.25	0.59	0.548361
1302	dm3.chr2L	9,966,959 – 9,967,061	- - - - - - - -	1777	9,966,959 – 9,967,061	+	12	118	82.73	-1.55	0.64	0.561415
1303	dm3.chr2L	9,971,616 – 9,971,764	- - - - - - - -	1778	9,971,616 – 9,971,732	+	5	117	71.13	-1.23	0.50	0.550578
1303	dm3.chr2L	9,971,616 – 9,971,764	- - - - - - - -	1779	9,971,654 – 9,971,764	+	4	111	85.89	-2.82	0.62	0.927593
1304	dm3.chr2L	9,975,542 – 9,975,649	- - - - - - - -	1780	9,975,542 – 9,975,649	+	3	107	55.14	-2.38	0.38	0.989428
1304	dm3.chr2L	9,975,542 – 9,975,649	- - - - - - - -	1781	9,975,542 – 9,975,649	-	3	107	55.14	-1.24	0.41	0.712776
1305	dm3.chr2L	9,987,251 – 9,987,353	- - - intron="intron;ID=intron_CG4722:2_CG4722:3;Name=bib-in;Parent=FBtr0079929;parent_type=mRNA" - - - -	1782	9,987,251 – 9,987,353	-	7	107	71.66	-0.79	0.65	0.716908
1306	dm3.chr2L	9,993,236 – 9,993,348	- - CDS="CDS;ID=CDS_CG4722:5_705;Name=bib-cds;Parent=FBtr0079929;parent_type=mRNA" - - - - -	1783	9,993,236 – 9,993,348	+	15	116	74.16	-0.63	0.70	0.860267
1307	dm3.chr2L	10,007,777 – 10,007,836	- - - - - - - -	1784	10,007,777 – 10,007,836	+	8	63	86.09	-1.74	0.69	0.526019
1307	dm3.chr2L	10,007,777 – 10,007,836	- - - - - - - -	1785	10,007,777 – 10,007,836	-	8	63	86.09	-1.71	0.71	0.571540
1308	dm3.chr2L	10,082,095 – 10,082,206	- - - intron="intron;ID=intron_FBgn0032180:13_FBgn0032180:12;Name=CG31714-in;Parent=FBtr0113032;parent_type=mRNA" - - - -	1786	10,082,095 – 10,082,206	+	6	116	65.10	-1.62	0.48	0.964288
1308	dm3.chr2L	10,082,095 – 10,082,206		1787	10,082,095 – 10,082,206	-	6	116	65.10	-2.57	0.42	0.996127
1309	dm3.chr2L	10,085,928 – 10,086,032	- - - intron="intron;ID=intron_FBgn0032180:13_FBgn0032180:12;Name=CG31714-in;Parent=FBtr0113032;parent_type=mRNA" - - - -	1788	10,085,928 – 10,086,032	+	6	106	52.12	-1.07	0.30	0.677678
1310	dm3.chr2L	10,095,406 – 10,095,498	- - - intron="intron;ID=intron_FBgn0083945:1_FBgn0083945:2;Name=CG34109-in;Parent=FBtr0300423;parent_type=mRNA" - - - -	1789	10,095,406 – 10,095,498	+	5	100	89.92	-1.54	0.92	0.867819
1311	dm3.chr2L	10,095,849 – 10,095,940	- - - intron="intron;ID=intron_FBgn0083945:1_FBgn0083945:2;Name=CG34109-in;Parent=FBtr0300423;parent_type=mRNA" - - - -	1790	10,095,849 – 10,095,940	+	6	115	70.93	-2.34	0.45	0.947734
1311	dm3.chr2L	10,095,849 – 10,095,940		1791	10,095,849 – 10,095,940	-	6	115	70.93	-1.67	0.46	0.636495
1312	dm3.chr2L	10,099,298 – 10,099,391	- - - intron="intron;ID=intron_FBgn0262032:4_FBgn0262032:3;Name=CG42843-in;Parent=FBtr0303928;parent_type=mRNA" - - - -	1792	10,099,298 – 10,099,391	-	5	116	69.57	-1.46	0.62	0.912497
1313	dm3.chr2L	10,109,327 – 10,109,476	- - - intron="intron;ID=intron_FBgn0083945:7_FBgn0083945:8;Name=CG34109-in;Parent=FBtr0300423;parent_type=mRNA" - - - -	1793	10,109,327 – 10,109,417	+	9	97	74.77	-1.92	0.68	0.989567
				1794	10,109,327 – 10,109,417	-	9	97	74.77	-2.91	0.56	0.998390
				1795	10,109,380 – 10,109,476	+	8	106	75.12	-2.66	0.42	0.953854
				1796	10,109,380 – 10,109,476	-	8	106	75.12	-2.62	0.44	0.962288
1314	dm3.chr2L	10,112,381 – 10,112,480	- - - intron="intron;ID=intron_FBgn0083945:8_FBgn0083945:9;Name=CG34109-in;Parent=FBtr0300423;parent_type=mRNA" - - - -	1797	10,112,381 – 10,112,480	+	5	109	80.19	-1.62	0.63	0.520033
1315	dm3.chr2L	10,114,020 – 10,114,074	- - - intron="intron;ID=intron_FBgn0083945:8_FBgn0083945:9;Name=CG34109-in;Parent=FBtr0300423;parent_type=mRNA" - - - -	1798	10,114,020 – 10,114,074	-	5	62	70.80	-1.51	0.56	0.852029
1316	dm3.chr2L	10,114,304 – 10,114,402	- - - intron="intron;ID=intron_FBgn0083945:8_FBgn0083945:9;Name=CG34109-in;Parent=FBtr0300423;parent_type=mRNA" - - - -	1799	10,114,304 – 10,114,402	+	9	119	81.35	-1.24	0.69	0.507298
1317	dm3.chr2L	10,119,476 – 10,119,571	- - - intron="intron;ID=intron_FBgn0083945:10_FBgn0083945:11;Name=CG34109-in;Parent=FBtr0300423;parent_type=mRNA" - - - -	1800	10,119,476 – 10,119,571	+	5	101	69.95	-1.40	0.51	0.751467
1317	dm3.chr2L	10,119,476 – 10,119,571		1801	10,119,476 – 10,119,571	-	5	101	69.95	-0.89	0.62	0.681428
1318	dm3.chr2L	10,122,493 – 10,122,592	- - CDS="CDS;ID=CDS_FBgn0032184:1_807;Name=CG13135-cds;Parent=FBtr0079966;parent_type=mRNA" intron="intron;ID=intron_FBgn0083945:12_FBgn0083945:13;Name=CG34109-in;Parent=FBtr0300423;parent_type=mRNA" - - - -	1802	10,122,493 – 10,122,592	+	8	120	62.64	-2.45	0.25	0.905965
1319	dm3.chr2L	10,125,387 – 10,125,477	- - CDS="CDS;ID=CDS_FBgn0083945:13_807;Name=CG34109-cds;Parent=FBtr0300423;parent_type=mRNA" - - - - -	1803	10,125,387 – 10,125,477	-	8	105	72.74	-1.01	0.52	0.542642
1320	dm3.chr2L	10,138,377 – 10,138,482	- - - - "Rfam_10.0=RF00524;R2_retro_el;AABU01002463.1/35801-35987\|1.6e-21" - - -	1804	10,138,377 – 10,138,482	+	4	116	51.51	-1.43	0.34	0.846329
1320	dm3.chr2L	10,138,377 – 10,138,482		1805	10,138,377 – 10,138,482	-	4	116	51.51	-1.41	0.31	0.705414
1321	dm3.chr2L	10,143,048 – 10,143,122	- - - - - - - -	1806	10,143,048 – 10,143,122	-	5	77	61.93	-1.02	0.54	0.930979
1322	dm3.chr2L	10,172,865 – 10,172,916	- - CDS="CDS;ID=CDS_FBgn0032188:1_802;Name=CG13137-cds;Parent=FBtr0301684;parent_type=mRNA" - - - - -	1807	10,172,865 – 10,172,916	-	5	51	80.20	-1.54	0.84	0.930099
1323	dm3.chr2L	10,181,418 – 10,181,470	- - - - - - - -	1808	10,181,418 – 10,181,470	-	6	54	81.39	-1.10	0.74	0.516903
1324	dm3.chr2L	10,182,380 – 10,182,451	- - - - - - - -	1809	10,182,380 – 10,182,451	+	5	74	86.65	-3.14	0.82	0.996055
1325	dm3.chr2L	10,209,709 – 10,209,774	- - - - - - - -	1810	10,209,709 – 10,209,774	+	5	67	96.96	-1.63	1.00	0.940883
1326	dm3.chr2L	10,219,258 – 10,219,361	- - - intron="intron;ID=intron_FBgn0024320:12_FBgn0024320:11;Name=Npc1a-in;Parent=FBtr0079957;parent_type=mRNA" - - - -	1811	10,219,258 – 10,219,361	-	5	103	55.36	-0.95	0.34	0.580511
1327	dm3.chr2L	10,230,809 – 10,230,950	- - - intron="intron;ID=intron_CG5694:6_CG5694:2;Name=CG5694-in;Parent=FBtr0079954;parent_type=mRNA" - - - -	1812	10,230,809 – 10,230,950	-	6	154	73.76	-2.45	0.46	0.967976
1328	dm3.chr2L	10,252,671 – 10,252,730	- - CDS="CDS;ID=CDS_FBgn0010407:3_705;Name=Ror-cds;Parent=FBtr0079978;parent_type=mRNA" - - - - -	1813	10,252,671 – 10,252,730	+	10	65	70.02	-0.78	0.78	0.942288
1329	dm3.chr2L	10,256,919 – 10,257,020	- - - - - - - -	1814	10,256,919 – 10,257,020	-	5	104	94.90	-1.90	0.81	0.521458
1330	dm3.chr2L	10,300,338 – 10,300,449	- - CDS="CDS;ID=CDS_CG13138:3_719;Name=CG13138-cds;Parent=FBtr0080067;parent_type=mRNA" - - - - -	1815	10,300,338 – 10,300,449	+	7	111	74.26	-1.13	0.58	0.781907
1331	dm3.chr2L	10,329,697 – 10,329,811	- - CDS="CDS;ID=CDS_FBgn0032221:7_777;Name=CG5375-cds;Parent=FBtr0113033;parent_type=mRNA" - - - - -	1816	10,329,697 – 10,329,811	+	9	119	69.06	-1.33	0.50	0.938595
1332	dm3.chr2L	10,344,039 – 10,344,131	- - - - "Rfam_10.0=RF00031;SECIS;AE014134.5/10344063-10344125\|9.6e-29" - - -	1817	10,344,039 – 10,344,131	+	10	115	66.14	-1.37	0.67	0.994448
1333	dm3.chr2L	10,364,484 – 10,364,596	- - - - - - - -	1818	10,364,484 – 10,364,596	-	6	120	85.41	-0.77	0.98	0.750550
1334	dm3.chr2L	10,372,019 – 10,372,120	- - CDS="CDS;ID=CDS_FBgn0041723:6_811;Name=rho-5-cds;Parent=FBtr0089855;parent_type=mRNA" - - - - -	1819	10,372,019 – 10,372,120	+	7	102	68.97	-1.74	0.33	0.706747
1335	dm3.chr2L	10,373,339 – 10,373,401	- - - intron="intron;ID=intron_FBgn0041723:7_FBgn0041723:6;Name=rho-5-in;Parent=FBtr0089855;parent_type=mRNA" - - - -	1820	10,373,339 – 10,373,401	-	5	62	85.02	-1.07	0.90	0.702754
1336	dm3.chr2L	10,390,618 – 10,390,709	- - CDS="CDS;ID=CDS_CG5102:2_705;Name=da-cds;Parent=FBtr0080008;parent_type=mRNA" - - - - -	1821	10,390,618 – 10,390,709	+	13	114	66.40	-2.30	0.38	0.985010
1337	dm3.chr2L	10,392,910 – 10,393,000	- - - - - - - -	1822	10,392,910 – 10,393,000	+	5	90	67.80	-1.87	0.41	0.720627
1338	dm3.chr2L	10,397,351 – 10,397,466	- - - intron="intron;ID=intron_FBgn0051716:4_FBgn0051716:7;Name=CG31716-in;Parent=FBtr0080010;parent_type=mRNA" - - - -	1823	10,397,351 – 10,397,466	-	6	126	74.28	-2.02	0.46	0.835327
1339	dm3.chr2L	10,420,849 – 10,420,921	- - CDS="CDS;ID=CDS_FBgn0005683:1_821;Name=pie-cds;Parent=FBtr0080046;parent_type=mRNA" - - - - -	1824	10,420,849 – 10,420,921	-	11	77	50.71	-0.81	0.33	0.729904
1340	dm3.chr2L	10,425,986 – 10,426,162	- - CDS="CDS;ID=CDS_FBgn0010083:1_848;Name=SmB-cds;Parent=FBtr0304118;parent_type=mRNA" - - - - -	1825	10,425,986 – 10,426,106	-	15	120	82.32	-2.15	0.47	0.704639
				1826	10,426,026 – 10,426,142	-	15	118	77.60	-1.81	0.55	0.960905
				1827	10,426,066 – 10,426,162	+	13	117	67.93	-1.62	0.55	0.989867
				1828	10,426,066 – 10,426,162	-	13	117	67.93	-2.65	0.70	0.999726
1341	dm3.chr2L	10,440,828 – 10,440,953	- - - - - - - -	1829	10,440,828 – 10,440,953	+	5	136	82.94	-1.49	0.76	0.618455
1341	dm3.chr2L	10,440,828 – 10,440,953	- - - - - - - -	1830	10,440,828 – 10,440,953	-	5	136	82.94	-0.89	0.90	0.596021
1342	dm3.chr2L	10,441,867 – 10,441,920	- - - - - - - -	1831	10,441,867 – 10,441,920	+	6	53	91.07	-1.78	0.91	0.921945
1343	dm3.chr2L	10,443,135 – 10,443,234	- - - intron="intron;ID=intron_FBgn0032252:2_FBgn0032252:3;Name=CG6232-in;Parent=FBtr0080029;parent_type=mRNA" - - - -	1832	10,443,135 – 10,443,234	-	5	116	79.72	-1.89	0.62	0.746688
1344	dm3.chr2L	10,443,711 – 10,443,823	- - - intron="intron;ID=intron_FBgn0032252:2_FBgn0032252:3;Name=CG6232-in;Parent=FBtr0080029;parent_type=mRNA" - - - -	1833	10,443,711 – 10,443,823	+	7	116	81.06	-1.08	0.75	0.599946
1345	dm3.chr2L	10,443,917 – 10,444,056	- - - intron="intron;ID=intron_FBgn0032252:2_FBgn0032252:3;Name=CG6232-in;Parent=FBtr0080029;parent_type=mRNA" - - - -	1834	10,443,917 – 10,444,019	+	5	109	88.89	-1.99	0.89	0.942905
1345	dm3.chr2L	10,443,917 – 10,444,056		1835	10,443,948 – 10,444,056	-	5	108	79.02	-1.31	0.72	0.638752
1346	dm3.chr2L	10,444,217 – 10,444,314	- - - intron="intron;ID=intron_FBgn0032252:2_FBgn0032252:3;Name=CG6232-in;Parent=FBtr0080029;parent_type=mRNA" - - - -	1836	10,444,217 – 10,444,314	-	6	120	77.11	-1.96	0.59	0.878147
1347	dm3.chr2L	10,444,885 – 10,444,978	- - - intron="intron;ID=intron_FBgn0032252:3_FBgn0032252:4;Name=CG6232-in;Parent=FBtr0080029;parent_type=mRNA" - - - -	1837	10,444,885 – 10,444,978	+	6	100	84.90	-2.30	0.65	0.878192
1348	dm3.chr2L	10,470,438 – 10,470,537	- - - intron="intron;ID=intron_CG31719:2_CG31719:3;Name=RluA-1-in;Parent=FBtr0080039,FBtr0080040;parent_type=mRNA" - - - -	1838	10,470,438 – 10,470,537	-	6	109	68.39	-1.71	0.37	0.519600
1349	dm3.chr2L	10,472,941 – 10,473,041	- - - intron="intron;ID=intron_CG31719:12_CG31719:14;Name=RluA-1-in;Parent=FBtr0080041;parent_type=mRNA" - - - -	1839	10,472,941 – 10,473,041	+	6	106	75.89	-1.08	0.62	0.529796
1350	dm3.chr2L	10,475,275 – 10,475,381	- - - - - - - -	1840	10,475,275 – 10,475,381	+	6	120	72.76	-1.01	0.76	0.886060
1351	dm3.chr2L	10,480,068 – 10,480,162	- - - intron="intron;ID=intron_FBgn0032256:3_FBgn0032256:4;Name=RluA-2-in;Parent=FBtr0304132;parent_type=mRNA" - - - -	1841	10,480,068 – 10,480,162	+	4	116	66.04	-2.02	0.41	0.819442
1352	dm3.chr2L	10,480,623 – 10,480,843	- - - intron="intron;ID=intron_FBgn0032256:3_FBgn0032256:4;Name=RluA-2-in;Parent=FBtr0304132;parent_type=mRNA" - - - -	1842	10,480,623 – 10,480,735	+	6	117	81.62	-2.57	0.70	0.988582
				1843	10,480,659 – 10,480,773	+	7	116	67.27	-1.68	0.48	0.986622
				1844	10,480,659 – 10,480,773	-	7	116	67.27	-1.66	0.29	0.527250
				1845	10,480,735 – 10,480,843	-	7	118	71.31	-1.36	0.43	0.514433
1353	dm3.chr2L	10,490,281 – 10,490,368	- - - - - - - -	1846	10,490,281 – 10,490,368	+	6	88	76.95	-1.32	0.58	0.616841
1354	dm3.chr2L	10,494,379 – 10,494,486	- - - intron="intron;ID=intron_FBgn0086347:6_FBgn0086347:5;Name=Myo31DF-in;Parent=FBtr0080035,FBtr0080036,FBtr0304138;parent_type=mRNA" - - - -	1847	10,494,379 – 10,494,486	+	10	109	68.95	-0.97	0.49	0.867072
1355	dm3.chr2L	10,505,648 – 10,505,779	- - - intron="intron;ID=intron_FBgn0086347:11_FBgn0086347:9;Name=Myo31DF-in;Parent=FBtr0080036;parent_type=mRNA" - - - -	1848	10,505,648 – 10,505,747	-	6	108	71.37	-0.90	0.60	0.667877
1355	dm3.chr2L	10,505,648 – 10,505,779		1849	10,505,671 – 10,505,779	-	6	117	70.96	-1.26	0.53	0.738261
1356	dm3.chr2L	10,541,433 – 10,541,524	- - - - - - - -	1850	10,541,433 – 10,541,524	+	6	91	81.05	-2.01	0.69	0.941690
1356	dm3.chr2L	10,541,433 – 10,541,524	- - - - - - - -	1851	10,541,433 – 10,541,524	-	6	91	81.05	-1.64	0.60	0.578873
1357	dm3.chr2L	10,544,553 – 10,544,643	- - - - - - - -	1852	10,544,553 – 10,544,643	+	6	96	68.62	-1.77	0.40	0.820229
1358	dm3.chr2L	10,548,274 – 10,548,379	- - - intron="intron;ID=intron_FBgn0051721:1_FBgn0051721:2;Name=Trim9-in;Parent=FBtr0080096,FBtr0304114;parent_type=mRNA" - - - -	1853	10,548,274 – 10,548,379	+	8	114	72.16	-1.44	0.49	0.706320
1359	dm3.chr2L	10,553,978 – 10,554,085	- - - intron="intron;ID=intron_FBgn0051721:1_FBgn0051721:2;Name=Trim9-in;Parent=FBtr0080096,FBtr0304114;parent_type=mRNA" - - - -	1854	10,553,978 – 10,554,085	-	12	113	69.44	-0.94	0.42	0.568764
1360	dm3.chr2L	10,555,836 – 10,555,948	- - - intron="intron;ID=intron_FBgn0051721:1_FBgn0051721:2;Name=Trim9-in;Parent=FBtr0080096,FBtr0304114;parent_type=mRNA" - - - -	1855	10,555,836 – 10,555,948	-	9	116	71.81	-1.26	0.46	0.716113
1361	dm3.chr2L	10,558,055 – 10,558,148	- - - intron="intron;ID=intron_FBgn0051721:1_FBgn0051721:2;Name=Trim9-in;Parent=FBtr0080096,FBtr0304114;parent_type=mRNA" - - - -	1856	10,558,055 – 10,558,148	+	5	93	82.59	-1.81	0.74	0.824028
1362	dm3.chr2L	10,558,299 – 10,558,396	- - - intron="intron;ID=intron_FBgn0051721:1_FBgn0051721:2;Name=Trim9-in;Parent=FBtr0080096,FBtr0304114;parent_type=mRNA" - - - -	1857	10,558,299 – 10,558,396	+	5	97	90.93	-2.72	0.85	0.983825
1362	dm3.chr2L	10,558,299 – 10,558,396		1858	10,558,299 – 10,558,396	-	5	97	90.93	-2.21	0.89	0.963245
1363	dm3.chr2L	10,572,297 – 10,572,390	- - - intron="intron;ID=intron_FBgn0051721:1_FBgn0051721:2;Name=Trim9-in;Parent=FBtr0080096,FBtr0304114;parent_type=mRNA" - - - -	1859	10,572,297 – 10,572,390	-	10	109	66.60	-1.17	0.39	0.621744
1364	dm3.chr2L	10,576,283 – 10,576,382	- - - intron="intron;ID=intron_FBgn0051721:1_FBgn0051721:2;Name=Trim9-in;Parent=FBtr0080096,FBtr0304114;parent_type=mRNA" - - - -	1860	10,576,283 – 10,576,382	-	3	103	86.80	-1.33	0.93	0.808371
1365	dm3.chr2L	10,588,841 – 10,588,941	- - - - - - - -	1861	10,588,841 – 10,588,941	+	5	100	86.61	-1.52	0.85	0.784770
1366	dm3.chr2L	10,592,923 – 10,592,991	- - - - - - - -	1862	10,592,923 – 10,592,991	+	3	70	60.48	-1.30	0.54	0.897857
1367	dm3.chr2L	10,617,571 – 10,617,670	- - - - - - - -	1863	10,617,571 – 10,617,670	-	5	102	68.18	-1.27	0.45	0.573317
1368	dm3.chr2L	10,629,053 – 10,629,162	- - - - - - - -	1864	10,629,053 – 10,629,162	+	6	109	79.89	-1.68	0.71	0.875246
1369	dm3.chr2L	10,635,901 – 10,635,954	- - - - - - - -	1865	10,635,901 – 10,635,954	-	11	64	85.28	-2.75	0.63	0.961384
1370	dm3.chr2L	10,637,988 – 10,638,049	- - - - - - - -	1866	10,637,988 – 10,638,049	+	6	62	68.04	-1.38	0.53	0.964506
1370	dm3.chr2L	10,637,988 – 10,638,049	- - - - - - - -	1867	10,637,988 – 10,638,049	-	6	62	68.04	-1.25	0.54	0.950919
1371	dm3.chr2L	10,658,999 – 10,659,134	- - - - - - - -	1868	10,658,999 – 10,659,112	+	8	119	69.45	-1.57	0.38	0.653031
1371	dm3.chr2L	10,658,999 – 10,659,134	- - - - - - - -	1869	10,659,033 – 10,659,134	-	8	111	66.79	-1.00	0.43	0.511859
1372	dm3.chr2L	10,670,888 – 10,670,999	- - CDS="CDS;ID=CDS_CG31871:5_711;Name=CG31871-cds;Parent=FBtr0080104;parent_type=mRNA" - - - - -	1870	10,670,888 – 10,670,999	-	12	123	74.62	-2.02	0.48	0.956349
1373	dm3.chr2L	10,673,913 – 10,674,010	- - - - - - - -	1871	10,673,913 – 10,674,010	-	5	99	79.96	-1.46	0.69	0.607867
1374	dm3.chr2L	10,694,902 – 10,694,998	- - - - - - - -	1872	10,694,902 – 10,694,998	+	7	111	71.44	-1.79	0.41	0.609591
1374	dm3.chr2L	10,694,902 – 10,694,998	- - - - - - - -	1873	10,694,902 – 10,694,998	-	7	111	71.44	-1.81	0.47	0.841861
1375	dm3.chr2L	10,698,987 – 10,699,087	- - - - - - - -	1874	10,698,987 – 10,699,087	+	5	100	87.60	-1.61	0.77	0.540556
1375	dm3.chr2L	10,698,987 – 10,699,087	- - - - - - - -	1875	10,698,987 – 10,699,087	-	5	100	87.60	-1.41	0.82	0.561500
1376	dm3.chr2L	10,709,017 – 10,709,103	- - - - - - - -	1876	10,709,017 – 10,709,103	-	7	105	76.50	-2.35	0.55	0.967417
1377	dm3.chr2L	10,709,472 – 10,709,568	- - - - - - - -	1877	10,709,472 – 10,709,568	+	6	97	87.82	-2.49	0.67	0.892743
1378	dm3.chr2L	10,717,258 – 10,717,359	- - - - - - - -	1878	10,717,258 – 10,717,359	+	4	104	74.43	-2.76	0.37	0.851791
1379	dm3.chr2L	10,718,580 – 10,718,656	- - - - - - - -	1879	10,718,580 – 10,718,656	+	7	76	65.02	-0.62	0.53	0.867153
1380	dm3.chr2L	10,737,004 – 10,737,098	- - - - - - - -	1880	10,737,004 – 10,737,098	+	5	112	60.47	-0.78	0.51	0.791311
1381	dm3.chr2L	10,748,194 – 10,748,286	- - - intron="intron;ID=intron_CG17124:1_CG17124:2;Name=CG17124-in;Parent=FBtr0080117,FBtr0080118;parent_type=mRNA" - - - -	1881	10,748,194 – 10,748,286	+	5	100	68.46	-2.82	0.61	0.999280
1381	dm3.chr2L	10,748,194 – 10,748,286		1882	10,748,194 – 10,748,286	-	5	100	68.46	-1.66	0.60	0.976497
1382	dm3.chr2L	10,751,239 – 10,751,290	- - - intron="intron;ID=intron_CG17124:1_CG17124:2;Name=CG17124-in;Parent=FBtr0080117,FBtr0080118;parent_type=mRNA" - - - -	1883	10,751,239 – 10,751,290	+	3	51	93.46	-1.83	1.00	0.971922
1382	dm3.chr2L	10,751,239 – 10,751,290		1884	10,751,239 – 10,751,290	-	3	51	93.46	-1.74	1.00	0.964615
1383	dm3.chr2L	10,754,352 – 10,754,407	- - - intron="intron;ID=intron_CG17124:1_CG17124:2;Name=CG17124-in;Parent=FBtr0080117,FBtr0080118;parent_type=mRNA" - - - -	1885	10,754,352 – 10,754,407	+	9	62	79.65	-1.40	0.68	0.809621
1384	dm3.chr2L	10,760,034 – 10,760,130	- - - - - - - -	1886	10,760,034 – 10,760,130	+	4	98	78.31	-1.48	0.78	0.814007
1385	dm3.chr2L	10,761,501 – 10,761,591	- - CDS="CDS;ID=CDS_CG6495:1_743;Name=CG6495-cds;Parent=FBtr0080114;parent_type=mRNA" - - - - -	1887	10,761,501 – 10,761,591	+	9	100	56.88	-0.51	0.45	0.830195
1386	dm3.chr2L	10,766,862 – 10,766,959	- - CDS="CDS;ID=CDS_CG6720:5_708;Name=UbcD2-cds;Parent=FBtr0080116;parent_type=mRNA" - - - - -	1888	10,766,862 – 10,766,959	+	8	112	74.27	-1.35	0.60	0.741521
1387	dm3.chr2L	10,769,666 – 10,769,726	- - CDS="CDS;ID=CDS_FBgn0032298:4_788;Name=CG6724-cds;Parent=FBtr0080191;parent_type=mRNA" - - - - -	1889	10,769,666 – 10,769,726	+	8	60	76.85	-1.18	0.66	0.863253
1387	dm3.chr2L	10,769,666 – 10,769,726		1890	10,769,666 – 10,769,726	-	8	60	76.85	-1.01	0.77	0.901212
1388	dm3.chr2L	10,777,743 – 10,777,860	- - - intron="intron;ID=intron_FBgn0051869:7_FBgn0051869:6;Name=CG31869-in;Parent=FBtr0080189,FBtr0290245,FBtr0290246;parent_type=mRNA" - - - -	1891	10,777,743 – 10,777,860	-	7	119	92.26	-1.62	0.82	0.543569
1389	dm3.chr2L	10,793,898 – 10,793,982	- - - - - - - -	1892	10,793,898 – 10,793,982	+	6	96	62.77	-0.61	0.47	0.524192
1390	dm3.chr2L	10,799,562 – 10,799,655	- - - - - - - -	1893	10,799,562 – 10,799,655	-	4	93	76.98	-1.34	0.90	0.931334
1391	dm3.chr2L	10,800,876 – 10,800,976	- - - - - - - -	1894	10,800,876 – 10,800,976	-	4	104	91.68	-1.60	1.00	0.959633
1392	dm3.chr2L	10,801,738 – 10,801,834	- - - - - - - -	1895	10,801,738 – 10,801,832	-	9	106	55.18	-1.37	0.36	0.963865
1392	dm3.chr2L	10,801,738 – 10,801,834	- - - - - - - -	1896	10,801,738 – 10,801,834	-	9	108	55.23	-1.43	0.35	0.963067
1393	dm3.chr2L	10,802,851 – 10,802,943	- - - - - - - -	1897	10,802,851 – 10,802,943	-	9	92	79.37	-1.52	0.57	0.714066
1394	dm3.chr2L	10,811,510 – 10,811,607	- - - intron="intron;ID=intron_CG6713:32_CG6713:15;Name=Nos-in;Parent=FBtr0100484,FBtr0100489;parent_type=mRNA" - - - -	1898	10,811,510 – 10,811,607	+	10	112	72.76	-2.25	0.45	0.980861
1394	dm3.chr2L	10,811,510 – 10,811,607		1899	10,811,510 – 10,811,607	-	10	112	72.76	-2.42	0.29	0.779860
1395	dm3.chr2L	10,814,418 – 10,814,470	- - - intron="intron;ID=intron_CG6713:11_CG6713:136;Name=Nos-in;Parent=FBtr0100491;parent_type=mRNA" - - - -	1900	10,814,418 – 10,814,470	+	8	52	91.30	-2.14	0.78	0.799290
1395	dm3.chr2L	10,814,418 – 10,814,470		1901	10,814,418 – 10,814,470	-	8	52	91.30	-1.33	0.88	0.580725
1396	dm3.chr2L	10,816,678 – 10,816,773	- - - intron="intron;ID=intron_CG6713:10_CG6713:11;Name=Nos-in;Parent=FBtr0100492,FBtr0100493,FBtr0100484,FBtr0100486,FBtr0100487,FBtr0100488,FBtr0100489,FBtr0100490,FBtr0100491,FBtr0080188;parent_type=mRNA" - - - -	1902	10,816,678 – 10,816,773	+	12	109	76.06	-1.48	0.54	0.774784
1397	dm3.chr2L	10,834,612 – 10,834,706	- - - intron="intron;ID=intron_CG6713:1_CG6713:2;Name=Nos-in;Parent=FBtr0100492,FBtr0100493,FBtr0100488,FBtr0100489,FBtr0100490,FBtr0100491,FBtr0080188;parent_type=mRNA" - - - -	1903	10,834,612 – 10,834,706	-	12	110	71.47	-1.03	0.52	0.777875
1398	dm3.chr2L	10,866,768 – 10,866,821	- - - - - - - -	1904	10,866,768 – 10,866,821	+	3	53	92.31	-1.10	0.93	0.505290
1399	dm3.chr2L	10,887,286 – 10,887,403	- - - - - - - -	1905	10,887,286 – 10,887,403	+	6	120	92.26	-2.16	0.87	0.936290
1399	dm3.chr2L	10,887,286 – 10,887,403	- - - - - - - -	1906	10,887,286 – 10,887,403	-	6	120	92.26	-2.36	0.79	0.888418
1400	dm3.chr2L	10,899,399 – 10,899,506	- - - - - - - -	1907	10,899,399 – 10,899,506	-	4	114	58.14	-1.44	0.35	0.696899
1401	dm3.chr2L	10,922,841 – 10,922,895	- - - intron="intron;ID=intron_FBgn0261871:6_FBgn0261871:5;Name=dpr2-in;Parent=FBtr0306117;parent_type=mRNA" - - - -	1908	10,922,841 – 10,922,895	+	3	55	97.58	-2.41	0.94	0.970341
1401	dm3.chr2L	10,922,841 – 10,922,895		1909	10,922,841 – 10,922,895	-	3	55	97.58	-1.42	0.97	0.798600
1402	dm3.chr2L	10,926,718 – 10,926,810	- - - intron="intron;ID=intron_FBgn0261871:9_FBgn0261871:8;Name=dpr2-in;Parent=FBtr0306116,FBtr0306117;parent_type=mRNA" - - - -	1910	10,926,718 – 10,926,810	+	12	118	82.35	-2.17	0.68	0.935670
1403	dm3.chr2L	10,927,644 – 10,927,734	- - - intron="intron;ID=intron_FBgn0261871:9_FBgn0261871:8;Name=dpr2-in;Parent=FBtr0306116,FBtr0306117;parent_type=mRNA" - - - -	1911	10,927,644 – 10,927,734	+	12	113	81.00	-2.17	0.54	0.812437
1404	dm3.chr2L	10,945,338 – 10,945,396	- - - - - - - -	1912	10,945,338 – 10,945,396	+	3	58	91.95	-1.61	0.85	0.540674
1405	dm3.chr2L	10,963,777 – 10,963,964	- - - intron="intron;ID=intron_FBgn0261871:10_FBgn0261871:9;Name=dpr2-in;Parent=FBtr0306116,FBtr0306117;parent_type=mRNA" - - - -	1913	10,963,777 – 10,963,893	+	6	117	63.50	-2.14	0.52	0.998297
				1914	10,963,777 – 10,963,893	-	6	117	63.50	-1.64	0.53	0.992443
				1915	10,963,817 – 10,963,929	+	6	120	69.91	-2.32	0.52	0.991835
				1916	10,963,817 – 10,963,929	-	6	120	69.91	-1.42	0.64	0.958235
				1917	10,963,853 – 10,963,964	+	6	117	74.88	-2.05	0.60	0.971754
				1918	10,963,853 – 10,963,964	-	6	117	74.88	-1.37	0.67	0.875669
1406	dm3.chr2L	10,967,808 – 10,967,898	- - - intron="intron;ID=intron_FBgn0053129:6_FBgn0053129:4;Name=CG33129-in;Parent=FBtr0080171;parent_type=mRNA" - - - -	1919	10,967,808 – 10,967,898	+	5	90	90.78	-1.58	0.88	0.775434
1407	dm3.chr2L	10,981,517 – 10,981,668	- - CDS="CDS;ID=CDS_FBgn0041781:9_857;Name=SCAR-cds;Parent=FBtr0305255,FBtr0305256;parent_type=mRNA" - - - - -	1920	10,981,517 – 10,981,628	+	15	114	74.51	-1.85	0.38	0.820491
1407	dm3.chr2L	10,981,517 – 10,981,668		1921	10,981,557 – 10,981,668	+	15	114	77.03	-2.08	0.43	0.927148
1408	dm3.chr2L	10,987,231 – 10,987,333	- - CDS="CDS;ID=CDS_CG6122:1_705;Name=piwi-cds;Parent=FBtr0080166;parent_type=mRNA" - - - - -	1922	10,987,231 – 10,987,333	+	9	116	61.70	-1.16	0.43	0.938316
1409	dm3.chr2L	11,027,554 – 11,027,645	- - - - - - - -	1923	11,027,554 – 11,027,645	-	4	91	93.74	-3.26	0.99	0.998028
1410	dm3.chr2L	11,028,648 – 11,028,739	- - - - - - - -	1924	11,028,648 – 11,028,739	-	4	116	72.70	-1.94	0.43	0.610419
1411	dm3.chr2L	11,030,040 – 11,030,098	- - CDS="CDS;ID=CDS_FBgn0032330:3_780;Name=Samuel-cds;Parent=FBtr0080161;parent_type=mRNA" - - - - -	1925	11,030,040 – 11,030,098	-	11	58	88.71	-1.48	0.86	0.787071
1412	dm3.chr2L	11,041,553 – 11,041,648	- - - intron="intron;ID=intron_FBgn0032330:6_FBgn0032330:5;Name=Samuel-in;Parent=FBtr0080161;parent_type=mRNA" - - - -	1926	11,041,553 – 11,041,648	-	6	95	88.70	-1.97	0.82	0.899754
1413	dm3.chr2L	11,064,120 – 11,064,211	- - - intron="intron;ID=intron_FBgn0032330:7_FBgn0032330:6;Name=Samuel-in;Parent=FBtr0080161;parent_type=mRNA" - - - -	1927	11,064,120 – 11,064,211	+	7	111	73.27	-0.78	0.67	0.580214
1414	dm3.chr2L	11,065,295 – 11,065,386	- - - intron="intron;ID=intron_FBgn0032330:7_FBgn0032330:6;Name=Samuel-in;Parent=FBtr0080161;parent_type=mRNA" - - - -	1928	11,065,295 – 11,065,386	-	4	94	92.97	-2.43	0.91	0.976582
1415	dm3.chr2L	11,067,113 – 11,067,209	- - - - - - - -	1929	11,067,113 – 11,067,209	+	7	103	67.42	-2.24	0.30	0.850321
1416	dm3.chr2L	11,069,428 – 11,069,521	- - - - - - - -	1930	11,069,428 – 11,069,521	+	4	97	87.72	-1.93	0.88	0.935601
1416	dm3.chr2L	11,069,428 – 11,069,521	- - - - - - - -	1931	11,069,428 – 11,069,521	-	4	97	87.72	-1.28	0.87	0.596630
1417	dm3.chr2L	11,077,622 – 11,077,720	- - - intron="intron;ID=intron_FBgn0032336:5_FBgn0032336:4;Name=Ast-C-in;Parent=FBtr0080234,FBtr0301761;parent_type=mRNA" - - - -	1932	11,077,622 – 11,077,720	-	10	101	69.73	-1.54	0.39	0.870083
1418	dm3.chr2L	11,096,647 – 11,096,752	- - - intron="intron;ID=intron_FBgn0032340:4_FBgn0032340:3;Name=Ge-1-in;Parent=FBtr0080231,FBtr0080232;parent_type=mRNA" - - - -	1933	11,096,647 – 11,096,752	-	11	112	64.83	-0.93	0.55	0.980230
1419	dm3.chr2L	11,103,501 – 11,103,551	- - - intron="intron;ID=intron_FBgn0032341:3_FBgn0032341:2;Name=Reps-in;Parent=FBtr0080230;parent_type=mRNA" - - - -	1934	11,103,501 – 11,103,551	-	3	50	88.00	-3.30	0.77	0.991175
1420	dm3.chr2L	11,104,838 – 11,104,929	- - CDS="CDS;ID=CDS_FBgn0032341:4_877;Name=Reps-cds;Parent=FBtr0080230;parent_type=mRNA" - - - - -	1935	11,104,838 – 11,104,929	+	13	108	64.68	-2.44	0.43	0.998955
1421	dm3.chr2L	11,112,821 – 11,112,917	- - CDS="CDS;ID=CDS_CG6201:1_726;Name=CG6201-cds;Parent=FBtr0080229;parent_type=mRNA" - - - - -	1936	11,112,821 – 11,112,917	-	12	120	74.98	-1.76	0.45	0.752876
1422	dm3.chr2L	11,118,974 – 11,119,091	- - CDS="CDS;ID=CDS_CG6230:1_719;Name=CG6230-cds;Parent=FBtr0080228;parent_type=mRNA" - - - - -	1937	11,118,974 – 11,119,091	+	15	120	72.67	-1.35	0.50	0.931013
1423	dm3.chr2L	11,138,087 – 11,138,164	- - CDS="CDS;ID=CDS_FBgn0040211:7_743;Name=hgo-cds;Parent=FBtr0080201;parent_type=mRNA" - - - - -	1938	11,138,087 – 11,138,164	-	11	79	77.21	-1.37	0.53	0.696259
1424	dm3.chr2L	11,143,465 – 11,143,585	- - CDS="CDS;ID=CDS_FBgn0010197:20_777;Name=Gyc32E-cds;Parent=FBtr0112856;parent_type=mRNA" intron="intron;ID=intron_FBgn0010197:20_FBgn0010197:19;Name=Gyc32E-in;Parent=FBtr0112856,FBtr0301840,FBtr0301841;parent_type=mRNA" - - - -	1939	11,143,465 – 11,143,585	+	12	145	65.82	-0.73	0.52	0.783581
1425	dm3.chr2L	11,152,831 – 11,152,945	- - - intron="intron;ID=intron_CG6287:3_CG6287:4;Name=CG6287-in;Parent=FBtr0080222;parent_type=mRNA" - - - -	1940	11,152,831 – 11,152,945	+	10	126	65.15	-2.28	0.30	0.978163
1425	dm3.chr2L	11,152,831 – 11,152,945		1941	11,152,831 – 11,152,945	-	10	126	65.15	-2.06	0.37	0.990053
1426	dm3.chr2L	11,162,266 – 11,162,386	- - CDS="CDS;ID=CDS_FBgn0259822:5_870;Name=Ca-beta-cds;Parent=FBtr0306385;parent_type=mRNA" intron="intron;ID=intron_FBgn0259822:6_FBgn0259822:4;Name=Ca-beta-in;Parent=FBtr0300114,FBtr0300536;parent_type=mRNA" - - - -	1942	11,162,266 – 11,162,386	-	3	120	99.44	-1.88	0.98	0.937859
1427	dm3.chr2L	11,171,507 – 11,171,604	- - CDS="CDS;ID=CDS_FBgn0014076:1_705;Name=Vm32E-cds;Parent=FBtr0080216;parent_type=mRNA" - - - - -	1943	11,171,507 – 11,171,604	+	4	97	65.22	-0.89	0.58	0.728163
1428	dm3.chr2L	11,181,573 – 11,181,669	- - - - - - - -	1944	11,181,573 – 11,181,669	-	12	115	82.72	-2.32	0.75	0.988073
1429	dm3.chr2L	11,183,208 – 11,183,369	- - - - - - - -	1945	11,183,208 – 11,183,305	-	11	110	90.61	-2.22	0.72	0.740248
				1946	11,183,266 – 11,183,369	+	10	107	67.77	-0.55	0.51	0.636734
				1947	11,183,266 – 11,183,369	-	10	107	67.77	-0.89	0.46	0.726242
1430	dm3.chr2L	11,196,983 – 11,197,076	- - - - - - - -	1948	11,196,983 – 11,197,076	-	5	101	82.47	-1.97	0.76	0.901694
1431	dm3.chr2L	11,201,495 – 11,201,589	- - - - - - - -	1949	11,201,495 – 11,201,589	-	8	118	71.06	-1.39	0.59	0.927206
1432	dm3.chr2L	11,202,508 – 11,202,621	- - - - - - - -	1950	11,202,508 – 11,202,621	+	6	139	66.49	-2.14	0.60	0.997275
1432	dm3.chr2L	11,202,508 – 11,202,621	- - - - - - - -	1951	11,202,508 – 11,202,621	-	6	139	66.49	-1.57	0.56	0.973291
1433	dm3.chr2L	11,209,245 – 11,209,461	- - - - - - - -	1952	11,209,245 – 11,209,295	+	3	50	96.00	-2.10	1.01	0.985042
				1953	11,209,295 – 11,209,398	-	9	115	71.20	-2.13	0.53	0.990922
				1954	11,209,321 – 11,209,436	+	5	117	87.56	-1.56	0.82	0.686929
				1955	11,209,321 – 11,209,436	-	5	117	87.56	-1.58	0.88	0.856590
				1956	11,209,360 – 11,209,461	-	5	108	82.18	-1.24	0.80	0.622474
1434	dm3.chr2L	11,229,720 – 11,229,823	- - - intron="intron;ID=intron_FBgn0259750:4_FBgn0259750:5;Name=ab-in;Parent=FBtr0080203,FBtr0080204,FBtr0300473;parent_type=mRNA" - - - -	1957	11,229,720 – 11,229,823	+	11	120	70.24	-1.61	0.43	0.808495
1434	dm3.chr2L	11,229,720 – 11,229,823		1958	11,229,720 – 11,229,823	-	11	120	70.24	-2.05	0.34	0.772426
1435	dm3.chr2L	11,242,662 – 11,242,756	- - - intron="intron;ID=intron_FBgn0259750:9_FBgn0259750:11;Name=ab-in;Parent=FBtr0080203,FBtr0080204,FBtr0300473;parent_type=mRNA" - - - -	1959	11,242,662 – 11,242,756	-	5	96	89.31	-2.24	0.85	0.952019
1436	dm3.chr2L	11,245,810 – 11,245,906	- - - intron="intron;ID=intron_FBgn0259750:9_FBgn0259750:11;Name=ab-in;Parent=FBtr0080203,FBtr0080204,FBtr0300473;parent_type=mRNA" - - - -	1960	11,245,810 – 11,245,906	-	6	102	64.31	-0.01	0.61	0.529805
1437	dm3.chr2L	11,252,820 – 11,252,919	- - - intron="intron;ID=intron_FBgn0259750:9_FBgn0259750:11;Name=ab-in;Parent=FBtr0080203,FBtr0080204,FBtr0300473;parent_type=mRNA" - - - -	1961	11,252,820 – 11,252,919	-	12	116	67.76	-1.60	0.45	0.961510
1438	dm3.chr2L	11,253,367 – 11,253,471	- - - intron="intron;ID=intron_FBgn0259750:9_FBgn0259750:11;Name=ab-in;Parent=FBtr0080203,FBtr0080204,FBtr0300473;parent_type=mRNA" - - - -	1962	11,253,367 – 11,253,471	-	8	104	69.01	-0.53	0.56	0.680584
1439	dm3.chr2L	11,278,947 – 11,279,145	- - CDS="CDS;ID=CDS_CG33695:14_751;Name=CG33695-cds;Parent=FBtr0091683;parent_type=mRNA" - - - - -	1963	11,278,947 – 11,279,041	+	8	100	73.18	-1.54	0.45	0.722039
				1964	11,278,947 – 11,279,041	-	8	100	73.18	-1.58	0.46	0.786044
				1965	11,278,980 – 11,279,080	+	8	106	70.02	-1.43	0.41	0.695727
				1966	11,279,041 – 11,279,145	-	8	110	76.05	-1.55	0.47	0.500000
1440	dm3.chr2L	11,292,802 – 11,292,938	- - - - - - - -	1967	11,292,802 – 11,292,938	+	9	147	74.63	-1.11	0.61	0.831678
1441	dm3.chr2L	11,292,985 – 11,293,078	- - - - - - - -	1968	11,292,985 – 11,293,078	-	3	94	69.29	-1.97	0.57	0.875639
1442	dm3.chr2L	11,304,663 – 11,304,777	- - - - - - - -	1969	11,304,663 – 11,304,777	+	10	126	79.91	-1.36	0.69	0.798722
1443	dm3.chr2L	11,308,154 – 11,308,256	- - - - - - - -	1970	11,308,154 – 11,308,256	-	12	119	81.78	-2.59	0.49	0.871020
1444	dm3.chr2L	11,309,228 – 11,309,328	- - - - - - - -	1971	11,309,228 – 11,309,328	-	12	120	72.55	-1.88	0.37	0.549499
1445	dm3.chr2L	11,312,951 – 11,313,063	- - - - - - - -	1972	11,312,951 – 11,313,063	-	12	120	92.71	-1.19	0.90	0.567582
1446	dm3.chr2L	11,314,475 – 11,314,593	- - - - - - - -	1973	11,314,475 – 11,314,593	+	11	120	96.19	-3.00	0.88	0.987261
1446	dm3.chr2L	11,314,475 – 11,314,593	- - - - - - - -	1974	11,314,475 – 11,314,593	-	11	120	96.19	-2.85	0.78	0.929077
1447	dm3.chr2L	11,328,738 – 11,328,832	- - - - - - - -	1975	11,328,738 – 11,328,832	+	8	101	72.21	-2.03	0.47	0.955892
1448	dm3.chr2L	11,341,756 – 11,341,864	- - - - - - - -	1976	11,341,756 – 11,341,864	-	9	119	73.02	-1.57	0.71	0.981266
1449	dm3.chr2L	11,345,274 – 11,345,372	- - - - - - - -	1977	11,345,274 – 11,345,372	-	12	112	75.45	-2.51	0.40	0.944570
1450	dm3.chr2L	11,349,264 – 11,349,370	- - - - - - - -	1978	11,349,264 – 11,349,370	-	10	116	78.27	-3.30	0.21	0.584029
1451	dm3.chr2L	11,351,595 – 11,351,647	- - - - - - - -	1979	11,351,595 – 11,351,647	-	4	52	94.82	-2.40	0.91	0.966897
1452	dm3.chr2L	11,369,274 – 11,369,364	- - - intron="intron;ID=intron_CG4881:2_CG4881:3;Name=salr-in;Parent=FBtr0080235,FBtr0080236;parent_type=mRNA" - - - -	1980	11,369,274 – 11,369,364	-	8	95	67.83	-0.69	0.58	0.868410
1453	dm3.chr2L	11,371,221 – 11,371,331	- - - intron="intron;ID=intron_CG4881:3_CG4881:4;Name=salr-in;Parent=FBtr0080235,FBtr0080236;parent_type=mRNA" - - - -	1981	11,371,221 – 11,371,331	-	10	126	76.63	-2.69	0.65	0.996583
1454	dm3.chr2L	11,375,536 – 11,375,599	- - - - - - - -	1982	11,375,536 – 11,375,599	+	5	63	90.10	-2.05	0.78	0.767951
1455	dm3.chr2L	11,375,647 – 11,375,741	- - - - - - - -	1983	11,375,647 – 11,375,741	-	12	109	70.50	-1.04	0.55	0.803130
1456	dm3.chr2L	11,376,566 – 11,376,660	- - - - - - - -	1984	11,376,566 – 11,376,660	+	7	103	83.96	-1.98	0.66	0.749072
1456	dm3.chr2L	11,376,566 – 11,376,660	- - - - - - - -	1985	11,376,566 – 11,376,660	-	7	103	83.96	-3.30	0.62	0.993003
1457	dm3.chr2L	11,378,908 – 11,379,011	- - - - - - - -	1986	11,378,908 – 11,379,011	+	11	116	86.11	-3.29	0.38	0.835033
1457	dm3.chr2L	11,378,908 – 11,379,011	- - - - - - - -	1987	11,378,908 – 11,379,011	-	11	116	86.11	-2.44	0.55	0.748604
1458	dm3.chr2L	11,379,246 – 11,379,357	- - - - - - - -	1988	11,379,246 – 11,379,357	-	12	120	90.81	-1.59	0.82	0.623567
1459	dm3.chr2L	11,386,219 – 11,386,358	- - - - - - - -	1989	11,386,219 – 11,386,322	+	8	116	67.79	-1.35	0.43	0.624155
				1990	11,386,250 – 11,386,345	+	6	96	72.05	-2.08	0.45	0.949505
				1991	11,386,265 – 11,386,358	+	6	94	70.75	-2.03	0.35	0.750165
1460	dm3.chr2L	11,391,217 – 11,391,268	- - - - - - - -	1992	11,391,217 – 11,391,268	-	11	52	91.65	-1.29	0.90	0.692708
1461	dm3.chr2L	11,396,107 – 11,396,200	- - - - - - - -	1993	11,396,107 – 11,396,200	-	6	106	76.92	-2.30	0.51	0.914070
1462	dm3.chr2L	11,398,033 – 11,398,135	- - - - - - - -	1994	11,398,033 – 11,398,135	-	9	113	72.40	-2.25	0.27	0.529884
1463	dm3.chr2L	11,398,733 – 11,398,880	- - - - - - - -	1995	11,398,733 – 11,398,840	-	8	126	56.61	-1.31	0.29	0.543310
1463	dm3.chr2L	11,398,733 – 11,398,880	- - - - - - - -	1996	11,398,773 – 11,398,880	-	8	117	60.15	-0.27	0.47	0.522273
1464	dm3.chr2L	11,400,069 – 11,400,169	- - - - - - - -	1997	11,400,069 – 11,400,169	+	11	101	92.73	-2.60	0.80	0.955905
1465	dm3.chr2L	11,400,742 – 11,400,915	- - - - - - - -	1998	11,400,742 – 11,400,844	-	5	108	59.86	-1.28	0.39	0.795443
				1999	11,400,777 – 11,400,880	+	5	104	61.48	-1.69	0.35	0.810367
				2000	11,400,777 – 11,400,880	-	5	104	61.48	-1.54	0.44	0.941190
				2001	11,400,817 – 11,400,915	-	4	102	65.15	-1.40	0.56	0.913152
1466	dm3.chr2L	11,401,614 – 11,401,714	- - - - - - - -	2002	11,401,614 – 11,401,714	+	12	109	77.28	-1.59	0.51	0.792658
1467	dm3.chr2L	11,403,129 – 11,403,215	- - - - - - - -	2003	11,403,129 – 11,403,215	-	7	89	67.48	-1.37	0.42	0.726514
1468	dm3.chr2L	11,406,352 – 11,406,418	- - - - - - - -	2004	11,406,352 – 11,406,418	+	7	66	70.64	-1.48	0.57	0.980767
1469	dm3.chr2L	11,408,047 – 11,408,123	- - - - - - - -	2005	11,408,047 – 11,408,123	+	7	78	73.17	-2.41	0.50	0.990222
1470	dm3.chr2L	11,419,121 – 11,419,214	- - - - - - - -	2006	11,419,121 – 11,419,214	+	5	106	87.06	-1.42	0.82	0.562796
1470	dm3.chr2L	11,419,121 – 11,419,214	- - - - - - - -	2007	11,419,121 – 11,419,214	-	5	106	87.06	-1.91	0.80	0.840059
1471	dm3.chr2L	11,420,536 – 11,420,631	- - - - - - - -	2008	11,420,536 – 11,420,631	-	6	97	75.83	-2.49	0.44	0.956192
1472	dm3.chr2L	11,424,798 – 11,424,859	- - - - - - - -	2009	11,424,798 – 11,424,859	+	10	70	84.49	-1.63	0.65	0.554598
1473	dm3.chr2L	11,426,048 – 11,426,170	- - - - - - - -	2010	11,426,048 – 11,426,170	+	6	141	74.18	-1.75	0.55	0.940479
1474	dm3.chr2L	11,426,453 – 11,426,505	- - - - - - - -	2011	11,426,453 – 11,426,505	+	5	52	92.88	-2.09	0.96	0.976523
1475	dm3.chr2L	11,427,659 – 11,427,731	- - - - - - - -	2012	11,427,659 – 11,427,731	-	7	75	70.91	-0.60	0.55	0.514688
1476	dm3.chr2L	11,430,589 – 11,430,729	- - - - - - - -	2013	11,430,589 – 11,430,729	+	7	151	75.01	-1.87	0.62	0.976799
1477	dm3.chr2L	11,433,186 – 11,433,283	- - - - - - - -	2014	11,433,186 – 11,433,283	+	6	100	71.72	-1.41	0.47	0.600548
1478	dm3.chr2L	11,435,378 – 11,435,472	- - - - - - - -	2015	11,435,378 – 11,435,472	-	8	110	83.73	-2.79	0.51	0.888971
1479	dm3.chr2L	11,452,799 – 11,452,904	- - - - - - - -	2016	11,452,799 – 11,452,904	-	10	110	80.34	-1.39	0.61	0.558216
1480	dm3.chr2L	11,453,314 – 11,453,368	- - - - - - - -	2017	11,453,314 – 11,453,368	-	6	54	97.53	-1.68	0.99	0.936931
1481	dm3.chr2L	11,463,823 – 11,463,921	- - - - - - - -	2018	11,463,823 – 11,463,921	-	3	98	75.27	-1.14	0.76	0.523265
1482	dm3.chr2L	11,469,138 – 11,469,226	- - - - - - - -	2019	11,469,138 – 11,469,226	+	11	89	81.68	-1.43	0.62	0.622222
1483	dm3.chr2L	11,476,094 – 11,476,192	- - - - - - - -	2020	11,476,094 – 11,476,192	+	9	102	76.38	-1.58	0.67	0.962897
1484	dm3.chr2L	11,476,950 – 11,477,005	- - - - - - - -	2021	11,476,950 – 11,477,005	+	5	56	82.62	-1.48	0.77	0.731587
1485	dm3.chr2L	11,480,282 – 11,480,372	- - - - - - - -	2022	11,480,282 – 11,480,372	+	5	94	61.58	-1.01	0.43	0.742344
1485	dm3.chr2L	11,480,282 – 11,480,372	- - - - - - - -	2023	11,480,282 – 11,480,372	-	5	94	61.58	-0.31	0.59	0.753158
1486	dm3.chr2L	11,485,427 – 11,485,608	- - - - - - - -	2024	11,485,427 – 11,485,529	-	3	102	94.77	-1.19	0.95	0.621480
				2025	11,485,467 – 11,485,569	-	3	102	95.42	-1.56	0.98	0.904922
				2026	11,485,498 – 11,485,608	-	4	120	87.68	-2.02	0.82	0.880713
1487	dm3.chr2L	11,487,561 – 11,487,695	- - - - - - - -	2027	11,487,561 – 11,487,667	+	5	111	95.09	-2.74	0.85	0.967141
				2028	11,487,561 – 11,487,667	-	5	111	95.09	-3.30	0.87	0.993012
				2029	11,487,596 – 11,487,695	+	7	109	73.22	-2.73	0.35	0.944174
				2030	11,487,596 – 11,487,695	-	7	109	73.22	-2.26	0.50	0.979713
1488	dm3.chr2L	11,494,946 – 11,495,065	- - - - - - - -	2031	11,494,946 – 11,495,065	+	3	121	77.19	-1.93	0.66	0.732590
1489	dm3.chr2L	11,496,120 – 11,496,210	- - - - - - - -	2032	11,496,120 – 11,496,210	-	8	94	75.25	-1.57	0.49	0.655753
1490	dm3.chr2L	11,508,107 – 11,508,198	- - - - - - - -	2033	11,508,107 – 11,508,198	+	12	103	71.00	-0.90	0.57	0.832960
1491	dm3.chr2L	11,508,911 – 11,509,011	- - - - - - - -	2034	11,508,911 – 11,509,011	+	5	100	95.60	-2.16	0.83	0.772049
1491	dm3.chr2L	11,508,911 – 11,509,011	- - - - - - - -	2035	11,508,911 – 11,509,011	-	5	100	95.60	-3.05	0.92	0.993051
1492	dm3.chr2L	11,511,002 – 11,511,144	- - - intron="intron;ID=intron_CG6509:4_CG6509:5;Name=CG6509-in;Parent=FBtr0080246,FBtr0080247;parent_type=mRNA" - - - -	2036	11,511,002 – 11,511,104	+	6	118	68.58	-1.78	0.58	0.986452
				2037	11,511,002 – 11,511,104	-	6	118	68.58	-1.67	0.67	0.991387
				2038	11,511,026 – 11,511,133	+	7	110	64.88	-1.56	0.38	0.916954
				2039	11,511,026 – 11,511,133	-	7	110	64.88	-1.52	0.47	0.982780
				2040	11,511,039 – 11,511,144	-	7	110	63.94	-1.57	0.42	0.966035
1493	dm3.chr2L	11,519,493 – 11,519,613	- - CDS="CDS;ID=CDS_FBgn0032364:4_824;Name=CG4970-cds;Parent=FBtr0080239;parent_type=mRNA" - - - - -	2041	11,519,493 – 11,519,613	+	8	120	72.50	-2.57	0.28	0.790407
1494	dm3.chr2L	11,521,967 – 11,522,100	- - CDS="CDS;ID=CDS_FBgn0262683:1_861;Name=CG43153-cds;Parent=FBtr0305602;parent_type=mRNA" - - - - -	2042	11,521,967 – 11,522,060	+	5	105	67.90	-1.55	0.42	0.803315
1494	dm3.chr2L	11,521,967 – 11,522,100		2043	11,522,003 – 11,522,100	+	9	109	66.29	-1.46	0.34	0.777978
1495	dm3.chr2L	11,538,280 – 11,538,372	- - - - - - - -	2044	11,538,280 – 11,538,372	+	7	105	75.27	-1.80	0.63	0.956093
1496	dm3.chr2L	11,552,002 – 11,552,093	- - - - - - - -	2045	11,552,002 – 11,552,093	-	6	94	82.51	-1.48	0.77	0.820763
1497	dm3.chr2L	11,578,053 – 11,578,108	- - - - - - - -	2046	11,578,053 – 11,578,108	+	8	63	74.92	-1.49	0.59	0.880764
1498	dm3.chr2L	11,596,494 – 11,596,587	- - - - - - - -	2047	11,596,494 – 11,596,587	+	9	108	78.69	-2.11	0.51	0.834111
1499	dm3.chr2L	11,617,476 – 11,617,573	- - - - - - - -	2048	11,617,476 – 11,617,573	-	8	99	85.59	-2.19	0.55	0.557617
1500	dm3.chr2L	11,620,811 – 11,620,909	- - - - - - - -	2049	11,620,811 – 11,620,909	-	7	112	68.00	-1.06	0.47	0.787611
1501	dm3.chr2L	11,626,915 – 11,627,018	- - - - - - - -	2050	11,626,915 – 11,627,018	+	8	108	62.26	-1.08	0.34	0.604966
1502	dm3.chr2L	11,632,304 – 11,632,452	- - - - - - - -	2051	11,632,304 – 11,632,452	+	11	166	85.43	-1.79	0.63	0.532201
1503	dm3.chr2L	11,639,555 – 11,639,654	- - - - - - - -	2052	11,639,555 – 11,639,654	+	7	106	83.01	-1.66	0.73	0.791861
1504	dm3.chr2L	11,642,444 – 11,642,513	- - - - - - - -	2053	11,642,444 – 11,642,513	+	12	69	82.36	-2.19	0.70	0.976516
1505	dm3.chr2L	11,662,893 – 11,663,006	- - - - - - - -	2054	11,662,893 – 11,663,006	+	5	113	85.28	-1.86	0.73	0.778268
1505	dm3.chr2L	11,662,893 – 11,663,006	- - - - - - - -	2055	11,662,893 – 11,663,006	-	5	113	85.28	-1.64	0.71	0.537600
1506	dm3.chr2L	11,679,241 – 11,679,359	- - - - - - - -	2056	11,679,241 – 11,679,359	+	4	118	94.07	-2.93	0.82	0.972840
1506	dm3.chr2L	11,679,241 – 11,679,359	- - - - - - - -	2057	11,679,241 – 11,679,359	-	4	118	94.07	-2.92	0.90	0.990185
1507	dm3.chr2L	11,679,650 – 11,679,781	- - - - - - - -	2058	11,679,650 – 11,679,781	+	6	142	83.37	-2.25	0.54	0.670248
1507	dm3.chr2L	11,679,650 – 11,679,781	- - - - - - - -	2059	11,679,650 – 11,679,781	-	6	142	83.37	-1.84	0.60	0.505140
1508	dm3.chr2L	11,683,917 – 11,683,979	- - - - - - - -	2060	11,683,917 – 11,683,979	+	5	62	94.19	-2.53	0.81	0.914955
1508	dm3.chr2L	11,683,917 – 11,683,979	- - - - - - - -	2061	11,683,917 – 11,683,979	-	5	62	94.19	-2.41	0.73	0.662072
1509	dm3.chr2L	11,688,370 – 11,688,472	- - - - - - - -	2062	11,688,370 – 11,688,472	+	8	111	74.59	-1.53	0.71	0.952926
1510	dm3.chr2L	11,690,380 – 11,690,430	- - - - - - - -	2063	11,690,380 – 11,690,430	+	5	50	93.80	-1.77	0.89	0.813632
1510	dm3.chr2L	11,690,380 – 11,690,430	- - - - - - - -	2064	11,690,380 – 11,690,430	-	5	50	93.80	-2.05	0.81	0.715052
1511	dm3.chr2L	11,693,757 – 11,693,855	- - - - - - - -	2065	11,693,757 – 11,693,855	-	4	98	83.61	-3.15	0.76	0.994498
1512	dm3.chr2L	11,702,700 – 11,702,758	- - - - - - - -	2066	11,702,700 – 11,702,758	-	3	58	79.31	-2.81	0.76	0.992174
1513	dm3.chr2L	11,704,452 – 11,704,549	- - - - - - - -	2067	11,704,452 – 11,704,549	+	9	109	84.32	-2.32	0.72	0.961878
1513	dm3.chr2L	11,704,452 – 11,704,549	- - - - - - - -	2068	11,704,452 – 11,704,549	-	9	109	84.32	-1.43	0.92	0.931825
1514	dm3.chr2L	11,712,284 – 11,712,420	- - - - - - - -	2069	11,712,284 – 11,712,395	+	7	111	84.49	-2.03	0.62	0.747903
1514	dm3.chr2L	11,712,284 – 11,712,420	- - - - - - - -	2070	11,712,306 – 11,712,420	+	7	114	80.18	-2.48	0.58	0.977887
1515	dm3.chr2L	11,729,463 – 11,729,563	- - - - - - - -	2071	11,729,463 – 11,729,563	+	5	100	80.40	-1.52	0.63	0.500000
1516	dm3.chr2L	11,734,123 – 11,734,231	- - - - - - - -	2072	11,734,123 – 11,734,215	+	9	109	60.45	-0.91	0.42	0.859471
1516	dm3.chr2L	11,734,123 – 11,734,231	- - - - - - - -	2073	11,734,141 – 11,734,231	+	12	113	59.19	-1.21	0.45	0.983202
1517	dm3.chr2L	11,737,796 – 11,737,909	- - - - - - - -	2074	11,737,796 – 11,737,909	-	7	115	70.38	-1.16	0.49	0.642139
1518	dm3.chr2L	11,739,109 – 11,739,217	- - - intron="intron;ID=intron_CG12602:1_CG12602:2;Name=Vha100-5-in;Parent=FBtr0080255;parent_type=mRNA" - - - -	2075	11,739,109 – 11,739,217	+	6	108	68.86	-1.11	0.47	0.724554
1519	dm3.chr2L	11,745,269 – 11,745,359	- - - - - - - -	2076	11,745,269 – 11,745,359	-	5	97	86.51	-1.47	0.81	0.585027
1520	dm3.chr2L	11,749,808 – 11,749,876	- - - - - - - -	2077	11,749,808 – 11,749,876	-	9	75	84.23	-1.55	0.66	0.500000
1521	dm3.chr2L	11,750,449 – 11,750,547	- - - - - - - -	2078	11,750,449 – 11,750,547	+	6	105	78.66	-1.59	0.75	0.926918
1522	dm3.chr2L	11,756,218 – 11,756,315	- - - - - - - -	2079	11,756,218 – 11,756,315	-	11	106	71.90	-0.84	0.70	0.922787
1523	dm3.chr2L	11,763,358 – 11,763,478	- - - - - - - -	2080	11,763,358 – 11,763,478	+	12	120	97.08	-2.62	0.93	0.984010
1524	dm3.chr2L	11,771,426 – 11,771,556	- - - - - - - -	2081	11,771,426 – 11,771,522	+	8	117	71.36	-1.80	0.47	0.844646
				2082	11,771,426 – 11,771,522	-	8	117	71.36	-2.26	0.45	0.953350
				2083	11,771,457 – 11,771,556	-	5	104	78.91	-1.67	0.57	0.527474
1525	dm3.chr2L	11,772,994 – 11,773,088	- - - - - - - -	2084	11,772,994 – 11,773,088	+	8	99	91.65	-3.44	0.89	0.997353
1526	dm3.chr2L	11,774,546 – 11,774,615	- - - - - - - -	2085	11,774,546 – 11,774,615	-	7	74	57.32	-0.89	0.39	0.833498
1527	dm3.chr2L	11,775,934 – 11,776,054	- - - - - - - -	2086	11,775,934 – 11,776,027	+	10	102	86.15	-1.40	0.75	0.500000
1527	dm3.chr2L	11,775,934 – 11,776,054	- - - - - - - -	2087	11,775,961 – 11,776,054	+	9	111	68.35	-0.79	0.59	0.729192
1528	dm3.chr2L	11,787,672 – 11,787,776	- - - - - - - -	2088	11,787,672 – 11,787,776	-	7	119	65.61	-1.21	0.42	0.746537
1529	dm3.chr2L	11,802,381 – 11,802,436	- - CDS="CDS;ID=CDS_FBgn0020309:7_857;Name=crol-cds;Parent=FBtr0305262;parent_type=mRNA" - - - - -	2089	11,802,381 – 11,802,436	+	14	70	70.52	-1.28	0.43	0.609313
1530	dm3.chr2L	11,805,199 – 11,805,253	- - - intron="intron;ID=intron_FBgn0020309:10_FBgn0020309:9;Name=crol-in;Parent=FBtr0080262,FBtr0080263,FBtr0080260,FBtr0080261;parent_type=mRNA" - - - -	2090	11,805,199 – 11,805,253	+	6	60	82.98	-1.77	0.77	0.891221
1531	dm3.chr2L	11,812,192 – 11,812,338	- - CDS="CDS;ID=CDS_CG14939:2_781;Name=CycY-cds;Parent=FBtr0080259;parent_type=mRNA" - - - - -	2091	11,812,192 – 11,812,338	+	10	155	67.11	-1.16	0.37	0.587904
1531	dm3.chr2L	11,812,192 – 11,812,338		2092	11,812,192 – 11,812,338	-	10	155	67.11	-1.38	0.32	0.505926
1532	dm3.chr2L	11,830,573 – 11,830,666	- - CDS="CDS;ID=CDS_FBgn0259225:7_786;Name=Pde1c-cds;Parent=FBtr0299783;parent_type=mRNA" - - - - -	2093	11,830,573 – 11,830,666	-	9	105	67.37	-0.94	0.47	0.724801
1533	dm3.chr2L	11,831,820 – 11,831,961	- - - intron="intron;ID=intron_FBgn0259225:8_FBgn0259225:7;Name=Pde1c-in;Parent=FBtr0299781,FBtr0299783,FBtr0299784,FBtr0299785,FBtr0299786;parent_type=mRNA" - - - -	2094	11,831,820 – 11,831,961	-	5	144	58.54	-2.05	0.25	0.768138
1534	dm3.chr2L	11,860,870 – 11,860,977	- - - intron="intron;ID=intron_FBgn0259225:13_FBgn0259225:12;Name=Pde1c-in;Parent=FBtr0299783;parent_type=mRNA" - - - -	2095	11,860,870 – 11,860,977	-	6	116	72.80	-1.53	0.47	0.691217
1535	dm3.chr2L	11,892,943 – 11,893,037	- - - - - - - -	2096	11,892,943 – 11,893,037	-	7	97	66.17	-1.41	0.41	0.839922
1536	dm3.chr2L	11,903,547 – 11,903,648	- - - - - - - -	2097	11,903,547 – 11,903,648	-	7	103	81.83	-2.50	0.64	0.981136
1537	dm3.chr2L	11,915,340 – 11,915,404	- - - intron="intron;ID=intron_FBgn0259225:16_FBgn0259225:15;Name=Pde1c-in;Parent=FBtr0299781,FBtr0299786;parent_type=mRNA" - - - -	2098	11,915,340 – 11,915,404	-	5	65	92.53	-1.25	0.91	0.591101
1538	dm3.chr2L	11,916,763 – 11,916,892	- - - intron="intron;ID=intron_FBgn0259225:16_FBgn0259225:15;Name=Pde1c-in;Parent=FBtr0299781,FBtr0299786;parent_type=mRNA" - - - -	2099	11,916,763 – 11,916,876	+	9	119	83.32	-1.75	0.78	0.933167
				2100	11,916,763 – 11,916,876	-	9	119	83.32	-1.05	0.78	0.550162
				2101	11,916,796 – 11,916,892	-	9	112	69.15	-2.46	0.40	0.989146
1539	dm3.chr2L	11,921,390 – 11,921,494	- - - intron="intron;ID=intron_FBgn0259225:16_FBgn0259225:15;Name=Pde1c-in;Parent=FBtr0299781,FBtr0299786;parent_type=mRNA" - - - -	2102	11,921,390 – 11,921,494	+	4	104	82.53	-2.75	0.63	0.967470
1539	dm3.chr2L	11,921,390 – 11,921,494		2103	11,921,390 – 11,921,494	-	4	104	82.53	-1.68	0.68	0.559913
1540	dm3.chr2L	11,940,997 – 11,941,127	- - - - - - - -	2104	11,940,997 – 11,941,102	+	9	122	70.72	-1.33	0.49	0.777125
1540	dm3.chr2L	11,940,997 – 11,941,127	- - - - - - - -	2105	11,941,031 – 11,941,127	+	9	107	59.80	-1.33	0.38	0.956153
1541	dm3.chr2L	11,941,263 – 11,941,356	- - - - - - - -	2106	11,941,263 – 11,941,356	-	11	119	64.94	-1.07	0.44	0.570430
1542	dm3.chr2L	11,950,197 – 11,950,318	- - - - - - - -	2107	11,950,197 – 11,950,297	+	8	105	79.11	-1.67	0.58	0.729142
1542	dm3.chr2L	11,950,197 – 11,950,318	- - - - - - - -	2108	11,950,225 – 11,950,318	-	5	97	71.56	-1.60	0.43	0.500000
1543	dm3.chr2L	11,954,111 – 11,954,213	- - - - - - - -	2109	11,954,111 – 11,954,213	-	8	106	76.19	-1.32	0.74	0.949915
1544	dm3.chr2L	11,963,951 – 11,964,061	FBnoncoding="ncRNA;ID=FBtr0303297;Name=bft-RC;Parent=FBgn0041606;Dbxref=FlyBase_Annotation_IDs:CR31863-RC;score_text=Weakly" - - - - - - -	2110	11,963,951 – 11,964,061	+	4	118	69.34	-1.83	0.46	0.723732
1544	dm3.chr2L	11,963,951 – 11,964,061		2111	11,963,951 – 11,964,061	-	4	118	69.34	-1.49	0.56	0.784473
1545	dm3.chr2L	11,964,177 – 11,964,283	FBnoncoding="ncRNA;ID=FBtr0303297;Name=bft-RC;Parent=FBgn0041606;Dbxref=FlyBase_Annotation_IDs:CR31863-RC;score_text=Weakly" - - - - - - -	2112	11,964,177 – 11,964,278	-	5	103	88.61	-2.76	0.78	0.978628
1545	dm3.chr2L	11,964,177 – 11,964,283		2113	11,964,181 – 11,964,283	-	5	104	86.19	-2.72	0.82	0.990162
1546	dm3.chr2L	11,966,772 – 11,966,858	FBnoncoding="ncRNA;ID=FBtr0303297;Name=bft-RC;Parent=FBgn0041606;Dbxref=FlyBase_Annotation_IDs:CR31863-RC;score_text=Weakly" - - - - - - -	2114	11,966,772 – 11,966,858	+	12	102	75.77	-2.09	0.36	0.500000
1546	dm3.chr2L	11,966,772 – 11,966,858		2115	11,966,772 – 11,966,858	-	12	102	75.77	-2.12	0.56	0.972208
1547	dm3.chr2L	11,972,444 – 11,972,581	- - - - - - - -	2116	11,972,444 – 11,972,551	+	5	112	86.33	-1.95	0.69	0.623513
				2117	11,972,444 – 11,972,551	-	5	112	86.33	-2.67	0.80	0.985373
				2118	11,972,484 – 11,972,581	-	4	97	85.40	-1.97	0.86	0.945375
1548	dm3.chr2L	11,987,557 – 11,987,668	- - - intron="intron;ID=intron_FBgn0032388:8_FBgn0032388:7;Name=CG6686-in;Parent=FBtr0089572;parent_type=mRNA" - - - -	2119	11,987,557 – 11,987,661	-	11	117	67.00	-2.20	0.39	0.990919
1548	dm3.chr2L	11,987,557 – 11,987,668		2120	11,987,564 – 11,987,668	-	11	117	64.63	-1.15	0.38	0.749203
1549	dm3.chr2L	12,004,098 – 12,004,188	- - - - - - - -	2121	12,004,098 – 12,004,188	+	6	94	72.03	-2.06	0.63	0.987965
1550	dm3.chr2L	12,005,411 – 12,005,491	- - - - - - - -	2122	12,005,411 – 12,005,491	-	7	84	68.82	-1.65	0.42	0.787724
1551	dm3.chr2L	12,006,267 – 12,006,359	- - - - - - - -	2123	12,006,267 – 12,006,359	+	5	95	84.87	-2.62	0.58	0.857546
1552	dm3.chr2L	12,006,494 – 12,006,655	- - - - - - - -	2124	12,006,494 – 12,006,556	-	5	62	98.06	-1.39	0.99	0.854099
1552	dm3.chr2L	12,006,494 – 12,006,655	- - - - - - - -	2125	12,006,556 – 12,006,655	-	5	100	84.02	-1.31	0.80	0.595549
1553	dm3.chr2L	12,009,751 – 12,009,846	- - - - - - - -	2126	12,009,751 – 12,009,846	+	8	110	68.27	-0.87	0.49	0.589103
1553	dm3.chr2L	12,009,751 – 12,009,846	- - - - - - - -	2127	12,009,751 – 12,009,846	-	8	110	68.27	-0.38	0.65	0.694519
1554	dm3.chr2L	12,010,960 – 12,011,072	- - - - - - - -	2128	12,010,960 – 12,011,072	+	12	118	82.45	-1.77	0.56	0.713186
1555	dm3.chr2L	12,011,495 – 12,011,569	- - - - - - - -	2129	12,011,495 – 12,011,569	+	12	78	93.55	-1.74	0.89	0.840098
1556	dm3.chr2L	12,011,882 – 12,011,989	- - - - - - - -	2130	12,011,882 – 12,011,989	+	12	120	88.11	-2.18	0.75	0.889210
1557	dm3.chr2L	12,026,256 – 12,026,362	- - - - - - - -	2131	12,026,256 – 12,026,362	+	6	111	72.41	-2.02	0.55	0.977204
1558	dm3.chr2L	12,035,318 – 12,035,423	- - CDS="CDS;ID=CDS_FBgn0042126:3_781;Name=CG18788-cds;Parent=FBtr0289986;parent_type=mRNA" - - - - -	2132	12,035,318 – 12,035,423	-	7	121	60.12	-1.50	0.28	0.559009
1559	dm3.chr2L	12,079,548 – 12,079,650	- - - - - - - -	2133	12,079,548 – 12,079,650	-	6	107	62.47	-1.36	0.38	0.767375
1560	dm3.chr2L	12,082,594 – 12,082,706	- - - - - - - -	2134	12,082,594 – 12,082,706	+	5	112	81.06	-2.22	0.74	0.959379
1561	dm3.chr2L	12,083,723 – 12,083,849	- - CDS="CDS;ID=CDS_CG6716:2_717;Name=prd-cds;Parent=FBtr0080299;parent_type=mRNA" - - - - -	2135	12,083,723 – 12,083,824	-	10	109	65.41	-1.58	0.30	0.622994
1561	dm3.chr2L	12,083,723 – 12,083,849		2136	12,083,740 – 12,083,849	-	11	113	57.95	-1.34	0.31	0.886046
1562	dm3.chr2L	12,084,121 – 12,084,226	- - CDS="CDS;ID=CDS_CG6716:2_717;Name=prd-cds;Parent=FBtr0080299;parent_type=mRNA" - - - - -	2137	12,084,121 – 12,084,211	+	9	105	61.24	-1.92	0.31	0.937290
1562	dm3.chr2L	12,084,121 – 12,084,226		2138	12,084,132 – 12,084,226	+	9	109	60.97	-1.23	0.36	0.811861
1563	dm3.chr2L	12,101,363 – 12,101,463	- - CDS="CDS;ID=CDS_FBgn0029137:1_759;Name=Patsas-cds;Parent=FBtr0080362;parent_type=mRNA" - - - - -	2139	12,101,363 – 12,101,463	+	14	111	72.55	-0.71	0.51	0.526891
1564	dm3.chr2L	12,102,916 – 12,103,050	- - CDS="CDS;ID=CDS_FBgn0029137:2_759;Name=Patsas-cds;Parent=FBtr0080362;parent_type=mRNA" - - - - -	2140	12,102,916 – 12,103,018	+	13	115	71.81	-2.69	0.19	0.554806
1564	dm3.chr2L	12,102,916 – 12,103,050		2141	12,102,946 – 12,103,050	-	14	117	74.58	-2.32	0.28	0.524426
1565	dm3.chr2L	12,119,765 – 12,119,858	- - - - - - - -	2142	12,119,765 – 12,119,858	-	12	112	75.45	-1.19	0.56	0.586145
1566	dm3.chr2L	12,120,718 – 12,120,772	- - - - - - - -	2143	12,120,718 – 12,120,772	-	3	54	97.53	-1.31	1.00	0.852883
1567	dm3.chr2L	12,120,905 – 12,121,001	- - - - - - - -	2144	12,120,905 – 12,121,001	+	4	111	80.35	-1.14	0.80	0.517099
1568	dm3.chr2L	12,124,535 – 12,124,627	- - - - - - - -	2145	12,124,535 – 12,124,627	+	5	92	79.71	-0.97	0.82	0.657250
1569	dm3.chr2L	12,143,153 – 12,143,213	- - - intron="intron;ID=intron_FBgn0051760:1_FBgn0051760:2;Name=CG31760-in;Parent=FBtr0080338,FBtr0301019;parent_type=mRNA" - - - -	2146	12,143,153 – 12,143,213	-	11	65	65.43	-0.99	0.45	0.898936
1570	dm3.chr2L	12,166,970 – 12,167,078	- - - - - - - -	2147	12,166,970 – 12,167,078	+	14	113	64.86	-0.65	0.46	0.865107
1571	dm3.chr2L	12,183,465 – 12,183,560	- - - - - - - -	2148	12,183,465 – 12,183,560	+	12	119	91.63	-3.00	0.68	0.944633
1572	dm3.chr2L	12,185,058 – 12,185,148	- - - - - - - -	2149	12,185,058 – 12,185,148	+	11	116	75.86	-2.31	0.51	0.961460
1573	dm3.chr2L	12,190,419 – 12,190,510	- - - - - - - -	2150	12,190,419 – 12,190,510	-	9	111	74.70	-1.78	0.46	0.748984
1574	dm3.chr2L	12,191,464 – 12,191,598	- - - - - - - -	2151	12,191,464 – 12,191,566	+	8	108	56.02	-1.17	0.41	0.975244
1574	dm3.chr2L	12,191,464 – 12,191,598	- - - - - - - -	2152	12,191,498 – 12,191,598	+	10	116	58.48	-1.23	0.45	0.983893
1575	dm3.chr2L	12,191,956 – 12,192,047	- - - - - - - -	2153	12,191,956 – 12,192,047	-	5	91	89.88	-1.97	0.77	0.712107
1576	dm3.chr2L	12,192,701 – 12,192,799	- - - - - - - -	2154	12,192,701 – 12,192,799	+	8	98	83.33	-2.30	0.55	0.774298
1577	dm3.chr2L	12,225,728 – 12,225,791	- - - - - - - -	2155	12,225,728 – 12,225,791	+	7	67	68.89	-0.99	0.77	0.979033
1577	dm3.chr2L	12,225,728 – 12,225,791	- - - - - - - -	2156	12,225,728 – 12,225,791	-	7	67	68.89	-1.43	0.49	0.936471
1578	dm3.chr2L	12,237,213 – 12,237,303	- - - - - - - -	2157	12,237,213 – 12,237,303	-	5	95	59.76	-1.19	0.35	0.531210
1579	dm3.chr2L	12,257,641 – 12,257,733	- - - intron="intron;ID=intron_FBgn0000114:2_FBgn0000114:5;Name=aret-in;Parent=FBtr0080344;parent_type=mRNA" - - - -	2158	12,257,641 – 12,257,733	+	4	93	68.05	-1.22	0.61	0.763903
1579	dm3.chr2L	12,257,641 – 12,257,733		2159	12,257,641 – 12,257,733	-	4	93	68.05	-1.61	0.56	0.876982
1580	dm3.chr2L	12,263,069 – 12,263,172	- - - intron="intron;ID=intron_FBgn0000114:2_FBgn0000114:5;Name=aret-in;Parent=FBtr0080344;parent_type=mRNA" - - - -	2160	12,263,069 – 12,263,172	+	8	115	68.36	-1.17	0.60	0.969505
1580	dm3.chr2L	12,263,069 – 12,263,172		2161	12,263,069 – 12,263,172	-	8	115	68.36	-2.93	0.57	0.999769
1581	dm3.chr2L	12,263,538 – 12,263,590	- - - intron="intron;ID=intron_FBgn0000114:2_FBgn0000114:5;Name=aret-in;Parent=FBtr0080344;parent_type=mRNA" - - - -	2162	12,263,538 – 12,263,590	+	6	63	76.36	-1.49	0.61	0.650832
1582	dm3.chr2L	12,282,752 – 12,282,845	- - - intron="intron;ID=intron_FBgn0000114:7_FBgn0000114:10;Name=aret-in;Parent=FBtr0080344,FBtr0080345,FBtr0080346,FBtr0300567;parent_type=mRNA" - - - -	2163	12,282,752 – 12,282,845	-	8	120	63.61	-1.37	0.42	0.865212
1583	dm3.chr2L	12,283,995 – 12,284,150	- - - intron="intron;ID=intron_FBgn0000114:7_FBgn0000114:10;Name=aret-in;Parent=FBtr0080344,FBtr0080345,FBtr0080346,FBtr0300567;parent_type=mRNA" - - - -	2164	12,283,995 – 12,284,150	+	4	157	75.52	-2.07	0.47	0.570937
1584	dm3.chr2L	12,284,644 – 12,284,747	- - - intron="intron;ID=intron_FBgn0000114:7_FBgn0000114:10;Name=aret-in;Parent=FBtr0080344,FBtr0080345,FBtr0080346,FBtr0300567;parent_type=mRNA" - - - -	2165	12,284,644 – 12,284,747	+	10	115	72.72	-0.97	0.49	0.582955
1585	dm3.chr2L	12,295,834 – 12,295,939	- - - intron="intron;ID=intron_FBgn0000114:9_FBgn0000114:10;Name=aret-in;Parent=FBtr0080347;parent_type=mRNA" - - - -	2166	12,295,834 – 12,295,933	+	11	118	80.07	-2.26	0.77	0.991770
				2167	12,295,834 – 12,295,933	-	11	118	80.07	-1.63	0.72	0.924093
				2168	12,295,838 – 12,295,939	+	11	124	83.10	-2.99	0.64	0.992067
				2169	12,295,838 – 12,295,939	-	11	124	83.10	-2.19	0.58	0.812775
1586	dm3.chr2L	12,298,184 – 12,298,282	- - - intron="intron;ID=intron_FBgn0000114:9_FBgn0000114:10;Name=aret-in;Parent=FBtr0080347;parent_type=mRNA" - - - -	2170	12,298,184 – 12,298,282	-	6	102	70.35	-1.73	0.40	0.752397
1587	dm3.chr2L	12,298,975 – 12,299,108	- - CDS="CDS;ID=CDS_FBgn0000114:11_766;Name=aret-cds;Parent=FBtr0080345,FBtr0080346,FBtr0300567;parent_type=mRNA" - - - - -	2171	12,298,975 – 12,299,108	-	15	133	71.18	-1.50	0.37	0.847264
1588	dm3.chr2L	12,301,943 – 12,302,108	- - - intron="intron;ID=intron_FBgn0000114:13_FBgn0000114:14;Name=aret-in;Parent=FBtr0080346;parent_type=mRNA" - - - -	2172	12,301,943 – 12,302,108	-	6	185	67.91	-1.59	0.39	0.527757
1589	dm3.chr2L	12,305,189 – 12,305,318	- - - intron="intron;ID=intron_FBgn0000114:14_FBgn0000114:17;Name=aret-in;Parent=FBtr0080347;parent_type=mRNA" - - - -	2173	12,305,189 – 12,305,318	-	5	137	74.14	-0.96	0.67	0.545228
1590	dm3.chr2L	12,306,736 – 12,306,791	- - - intron="intron;ID=intron_FBgn0000114:14_FBgn0000114:17;Name=aret-in;Parent=FBtr0080347;parent_type=mRNA" - - - -	2174	12,306,736 – 12,306,791	+	7	55	92.19	-1.41	0.89	0.654504
1591	dm3.chr2L	12,314,686 – 12,314,815	- - - - - - - -	2175	12,314,686 – 12,314,803	+	12	120	92.84	-2.33	0.78	0.881858
				2176	12,314,686 – 12,314,803	-	12	120	92.84	-2.23	0.88	0.958632
				2177	12,314,724 – 12,314,815	-	12	113	83.76	-2.55	0.56	0.926007
1592	dm3.chr2L	12,320,530 – 12,320,630	- - - - - - - -	2178	12,320,530 – 12,320,630	+	11	105	65.08	-1.14	0.45	0.881066
1593	dm3.chr2L	12,332,175 – 12,332,265	- - - - - - - -	2179	12,332,175 – 12,332,265	+	6	91	73.11	-0.97	0.60	0.660115
1593	dm3.chr2L	12,332,175 – 12,332,265	- - - - - - - -	2180	12,332,175 – 12,332,265	-	6	91	73.11	-2.00	0.66	0.992693
1594	dm3.chr2L	12,332,824 – 12,332,940	- - - - - - - -	2181	12,332,824 – 12,332,940	+	8	121	71.79	-1.44	0.59	0.959047
1595	dm3.chr2L	12,334,162 – 12,334,266	- - - - - - - -	2182	12,334,162 – 12,334,266	-	11	114	78.40	-2.21	0.39	0.704006
1596	dm3.chr2L	12,353,880 – 12,353,985	- - - intron="intron;ID=intron_FBgn0262475:3_FBgn0262475:4;Name=bru-2-in;Parent=FBtr0304856,FBtr0304857,FBtr0304858,FBtr0304859,FBtr0304860,FBtr0304862;parent_type=mRNA" - - - -	2183	12,353,880 – 12,353,985	+	10	112	73.72	-1.29	0.65	0.952237
1597	dm3.chr2L	12,354,123 – 12,354,209	- - - intron="intron;ID=intron_FBgn0262475:3_FBgn0262475:4;Name=bru-2-in;Parent=FBtr0304856,FBtr0304857,FBtr0304858,FBtr0304859,FBtr0304860,FBtr0304862;parent_type=mRNA" - - - -	2184	12,354,123 – 12,354,209	+	4	89	76.38	-2.91	0.34	0.763528
1597	dm3.chr2L	12,354,123 – 12,354,209		2185	12,354,123 – 12,354,209	-	4	89	76.38	-3.03	0.37	0.898398
1598	dm3.chr2L	12,360,792 – 12,360,848	- - - intron="intron;ID=intron_FBgn0262475:5_FBgn0262475:6;Name=bru-2-in;Parent=FBtr0304856,FBtr0304857,FBtr0304858,FBtr0304859,FBtr0304862;parent_type=mRNA" - - - -	2186	12,360,792 – 12,360,848	+	8	58	62.96	0.03	0.65	0.831785
1599	dm3.chr2L	12,361,609 – 12,361,717	- - - intron="intron;ID=intron_FBgn0262475:5_FBgn0262475:6;Name=bru-2-in;Parent=FBtr0304856,FBtr0304857,FBtr0304858,FBtr0304859,FBtr0304862;parent_type=mRNA" - - - -	2187	12,361,609 – 12,361,717	-	11	109	71.48	-1.59	0.53	0.978589
1600	dm3.chr2L	12,372,985 – 12,373,092	- - - intron="intron;ID=intron_FBgn0262475:8_FBgn0262475:9;Name=bru-2-in;Parent=FBtr0304864;parent_type=mRNA" - - - -	2188	12,372,985 – 12,373,092	+	6	107	78.69	-1.89	0.66	0.928909
1601	dm3.chr2L	12,373,986 – 12,374,123	- - CDS="CDS;ID=CDS_FBgn0262475:9_849;Name=bru-2-cds;Parent=FBtr0304861;parent_type=mRNA" - - - - -	2189	12,373,986 – 12,374,085	+	11	120	76.11	-1.56	0.50	0.500000
				2190	12,373,986 – 12,374,085	-	11	120	76.11	-1.47	0.71	0.921710
				2191	12,374,005 – 12,374,123	-	12	120	92.27	-1.64	0.84	0.680338
1602	dm3.chr2L	12,378,265 – 12,378,366	- - - intron="intron;ID=intron_FBgn0262475:9_FBgn0262475:10;Name=bru-2-in;Parent=FBtr0304861,FBtr0304864;parent_type=mRNA" - - - -	2192	12,378,265 – 12,378,366	+	6	103	76.39	-1.12	0.67	0.723603
1602	dm3.chr2L	12,378,265 – 12,378,366		2193	12,378,265 – 12,378,366	-	6	103	76.39	-1.66	0.78	0.976675
1603	dm3.chr2L	12,382,756 – 12,382,846	- - - intron="intron;ID=intron_FBgn0262475:9_FBgn0262475:10;Name=bru-2-in;Parent=FBtr0304861,FBtr0304864;parent_type=mRNA" - - - -	2194	12,382,756 – 12,382,846	+	6	90	59.48	-0.64	0.47	0.651512
1604	dm3.chr2L	12,386,888 – 12,386,978	- - - intron="intron;ID=intron_FBgn0262475:10_FBgn0262475:11;Name=bru-2-in;Parent=FBtr0304856,FBtr0304857,FBtr0304858,FBtr0304859,FBtr0304860,FBtr0304861,FBtr0304862,FBtr0304863,FBtr0304864;parent_type=mRNA" - - - -	2195	12,386,888 – 12,386,978	+	8	96	83.09	-2.54	0.45	0.644813
1605	dm3.chr2L	12,387,413 – 12,387,490	- - - intron="intron;ID=intron_FBgn0262475:10_FBgn0262475:11;Name=bru-2-in;Parent=FBtr0304856,FBtr0304857,FBtr0304858,FBtr0304859,FBtr0304860,FBtr0304861,FBtr0304862,FBtr0304863,FBtr0304864;parent_type=mRNA" - - - -	2196	12,387,413 – 12,387,490	-	10	90	61.90	-1.37	0.31	0.672451
1606	dm3.chr2L	12,391,510 – 12,391,604	- - - intron="intron;ID=intron_FBgn0262475:11_FBgn0262475:12;Name=bru-2-in;Parent=FBtr0304857,FBtr0304858;parent_type=mRNA" - - - -	2197	12,391,510 – 12,391,604	-	12	110	66.90	-1.07	0.39	0.550715
1607	dm3.chr2L	12,416,152 – 12,416,245	- - - intron="intron;ID=intron_FBgn0043841:9_FBgn0043841:7;Name=vir-1-in;Parent=FBtr0080391;parent_type=mRNA" - - - -	2198	12,416,152 – 12,416,245	+	10	103	83.36	-2.14	0.88	0.988648
1608	dm3.chr2L	12,457,225 – 12,457,316	- - - - - - - -	2199	12,457,225 – 12,457,316	+	9	108	67.54	-0.77	0.53	0.693955
1609	dm3.chr2L	12,459,021 – 12,459,174	- - - intron="intron;ID=intron_FBgn0259176:3_FBgn0259176:2;Name=bun-in;Parent=FBtr0299657;parent_type=mRNA" - - - -	2200	12,459,021 – 12,459,113	+	6	98	83.17	-2.25	0.55	0.701015
				2201	12,459,021 – 12,459,113	-	6	98	83.17	-2.33	0.53	0.702165
				2202	12,459,042 – 12,459,135	+	7	116	76.66	-3.80	0.67	0.999542
				2203	12,459,042 – 12,459,135	-	7	116	76.66	-2.97	0.62	0.996594
				2204	12,459,078 – 12,459,174	+	5	104	90.88	-1.18	0.94	0.709516
1610	dm3.chr2L	12,469,404 – 12,469,530	- - - - - - - -	2205	12,469,404 – 12,469,505	-	5	104	91.61	-2.50	0.66	0.628039
1610	dm3.chr2L	12,469,404 – 12,469,530	- - - - - - - -	2206	12,469,440 – 12,469,530	+	5	93	85.52	-2.68	0.65	0.934781
1611	dm3.chr2L	12,472,511 – 12,472,604	- - - - - - - -	2207	12,472,511 – 12,472,604	+	5	93	82.85	-1.54	0.74	0.617036
1611	dm3.chr2L	12,472,511 – 12,472,604	- - - - - - - -	2208	12,472,511 – 12,472,604	-	5	93	82.85	-2.41	0.58	0.816871
1612	dm3.chr2L	12,473,139 – 12,473,291	- - - - - - - -	2209	12,473,139 – 12,473,291	-	7	176	67.97	-1.01	0.47	0.609488
1613	dm3.chr2L	12,489,203 – 12,489,294	- - - - - - - -	2210	12,489,203 – 12,489,294	-	8	107	77.00	-1.84	0.52	0.706181
1614	dm3.chr2L	12,490,501 – 12,490,592	- - - - - - - -	2211	12,490,501 – 12,490,592	+	5	94	69.35	-1.45	0.46	0.668719
1615	dm3.chr2L	12,491,278 – 12,491,394	- - - - - - - -	2212	12,491,278 – 12,491,394	-	5	118	65.69	-1.10	0.45	0.640109
1616	dm3.chr2L	12,502,909 – 12,502,967	- - - intron="intron;ID=intron_FBgn0259176:10_FBgn0259176:9;Name=bun-in;Parent=FBtr0300522;parent_type=mRNA" - - - -	2213	12,502,909 – 12,502,967	-	7	61	74.05	-1.66	0.53	0.913832
1617	dm3.chr2L	12,510,769 – 12,510,876	- - - - - - - -	2214	12,510,769 – 12,510,876	+	7	114	76.79	-2.16	0.59	0.958630
1618	dm3.chr2L	12,543,950 – 12,544,052	FBnoncoding="ncRNA;ID=FBtr0303215;Name=CR42746-RA;Parent=FBgn0261709;Dbxref=FlyBase_Annotation_IDs:CR42746-RA;score_text=Moderately" - - intron="intron;ID=intron_FBgn0259176:17_FBgn0259176:16;Name=bun-in;Parent=FBtr0299658,FBtr0300523;parent_type=mRNA" - - - -	2215	12,543,950 – 12,544,052	+	7	104	73.17	-2.11	0.46	0.964908
1618	dm3.chr2L	12,543,950 – 12,544,052		2216	12,543,950 – 12,544,052	-	7	104	73.17	-1.96	0.43	0.904410
1619	dm3.chr2L	12,563,568 – 12,563,675	- - - - - - - -	2217	12,563,568 – 12,563,675	-	4	107	50.48	-1.96	0.21	0.733000
1620	dm3.chr2L	12,574,330 – 12,574,424	- - - - - - - -	2218	12,574,330 – 12,574,424	-	11	111	79.65	-1.27	0.67	0.622960
1621	dm3.chr2L	12,584,615 – 12,584,725	- - - - - - - -	2219	12,584,615 – 12,584,725	+	6	116	77.98	-1.63	0.53	0.537993
1622	dm3.chr2L	12,599,247 – 12,599,341	- - - intron="intron;ID=intron_FBgn0085424:2_FBgn0085424:3;Name=nub-in;Parent=FBtr0112642;parent_type=mRNA" - - - -	2220	12,599,247 – 12,599,341	-	6	109	67.99	-2.11	0.30	0.590481
1623	dm3.chr2L	12,606,654 – 12,606,745	- - - intron="intron;ID=intron_FBgn0085424:2_FBgn0085424:3;Name=nub-in;Parent=FBtr0112642;parent_type=mRNA" - - - -	2221	12,606,654 – 12,606,745	-	11	119	73.72	-1.49	0.47	0.621552
1624	dm3.chr2L	12,607,597 – 12,607,728	- - - intron="intron;ID=intron_FBgn0085424:2_FBgn0085424:3;Name=nub-in;Parent=FBtr0112642;parent_type=mRNA" - - - -	2222	12,607,597 – 12,607,698	+	12	114	65.95	-1.63	0.35	0.874983
				2223	12,607,630 – 12,607,728	+	10	103	61.55	-1.29	0.44	0.979070
				2224	12,607,630 – 12,607,728	-	10	103	61.55	-1.51	0.27	0.680548
1625	dm3.chr2L	12,621,068 – 12,621,175	- - - intron="intron;ID=intron_FBgn0085424:4_FBgn0085424:5;Name=nub-in;Parent=FBtr0112643;parent_type=mRNA" - - - -	2225	12,621,068 – 12,621,175	+	6	111	71.75	-1.23	0.51	0.690793
1626	dm3.chr2L	12,624,441 – 12,624,533	- - - intron="intron;ID=intron_FBgn0085424:5_FBgn0085424:6;Name=nub-in;Parent=FBtr0112642,FBtr0112643;parent_type=mRNA" - - - -	2226	12,624,441 – 12,624,533	-	7	96	73.06	-1.11	0.58	0.632941
1627	dm3.chr2L	12,634,264 – 12,634,358	- - - - - - - -	2227	12,634,264 – 12,634,358	+	11	118	67.21	-0.98	0.53	0.825037
1628	dm3.chr2L	12,646,713 – 12,646,812	- - - - - - - -	2228	12,646,713 – 12,646,812	-	7	106	75.49	-1.13	0.65	0.773554
1629	dm3.chr2L	12,674,372 – 12,674,465	- - - intron="intron;ID=intron_CG12287:6_CG12287:2;Name=pdm2-in;Parent=FBtr0080392;parent_type=mRNA" - - - -	2229	12,674,372 – 12,674,465	+	9	106	66.09	-1.40	0.54	0.983260
1630	dm3.chr2L	12,675,340 – 12,675,431	- - - intron="intron;ID=intron_CG12287:6_CG12287:2;Name=pdm2-in;Parent=FBtr0080392;parent_type=mRNA" - - - -	2230	12,675,340 – 12,675,431	-	8	99	71.11	-2.80	0.35	0.963955
1631	dm3.chr2L	12,679,119 – 12,679,215	- - - intron="intron;ID=intron_CG12287:1_CG12287:2;Name=pdm2-in;Parent=FBtr0080393;parent_type=mRNA" - - - -	2231	12,679,119 – 12,679,215	+	3	108	87.65	-1.62	0.87	0.777048
1632	dm3.chr2L	12,702,571 – 12,702,686	- - CDS="CDS;ID=CDS_CG5776:3_723;Name=CG5776-cds;Parent=FBtr0080407;parent_type=mRNA" - - - - -	2232	12,702,571 – 12,702,685	+	15	116	67.39	-1.30	0.31	0.597684
1632	dm3.chr2L	12,702,571 – 12,702,686		2233	12,702,572 – 12,702,686	+	15	116	67.31	-1.32	0.31	0.619171
1633	dm3.chr2L	12,711,577 – 12,711,638	- - CDS="CDS;ID=CDS_FBgn0032454:3_789;Name=CG5787-cds;Parent=FBtr0080405;parent_type=mRNA" - - - - -	2234	12,711,577 – 12,711,638	+	6	61	75.63	-1.52	0.73	0.961992
1634	dm3.chr2L	12,715,903 – 12,716,018	- - CDS="CDS;ID=CDS_FBgn0032455:6_789;Name=CG5792-cds;Parent=FBtr0301163;parent_type=mRNA" - - - - -	2235	12,715,903 – 12,715,999	+	4	96	90.97	-1.38	0.91	0.720049
				2236	12,715,923 – 12,716,018	+	5	99	67.18	-1.28	0.49	0.845526
				2237	12,715,923 – 12,716,018	-	5	99	67.18	-1.49	0.49	0.924315
1635	dm3.chr2L	12,752,670 – 12,752,739	- - - - - - - -	2238	12,752,670 – 12,752,739	+	8	69	81.62	-2.97	0.54	0.987199
1635	dm3.chr2L	12,752,670 – 12,752,739	- - - - - - - -	2239	12,752,670 – 12,752,739	-	8	69	81.62	-2.44	0.49	0.860975
1636	dm3.chr2L	12,763,900 – 12,763,992	- - - - - - - -	2240	12,763,900 – 12,763,992	-	3	93	64.75	-0.50	0.74	0.532016
1637	dm3.chr2L	12,769,045 – 12,769,179	- - - - - - - -	2241	12,769,045 – 12,769,179	+	9	143	72.92	-1.64	0.43	0.750403
1638	dm3.chr2L	12,790,594 – 12,790,700	- - - - - - - -	2242	12,790,594 – 12,790,700	+	9	114	84.68	-2.30	0.50	0.617192
1638	dm3.chr2L	12,790,594 – 12,790,700	- - - - - - - -	2243	12,790,594 – 12,790,700	-	9	114	84.68	-2.33	0.65	0.937648
1639	dm3.chr2L	12,805,006 – 12,805,061	- - - - - - - -	2244	12,805,006 – 12,805,061	+	5	55	87.09	-2.15	0.86	0.965660
1640	dm3.chr2L	12,808,952 – 12,809,068	- - - - - - - -	2245	12,808,952 – 12,809,068	-	6	117	74.59	-1.66	0.53	0.843062
1641	dm3.chr2L	12,810,536 – 12,810,677	- - - - - - - -	2246	12,810,536 – 12,810,677	+	5	150	79.53	-1.97	0.68	0.924317
1642	dm3.chr2L	12,822,847 – 12,822,906	- - - - - - - -	2247	12,822,847 – 12,822,906	+	6	66	63.37	-1.11	0.46	0.836269
1642	dm3.chr2L	12,822,847 – 12,822,906	- - - - - - - -	2248	12,822,847 – 12,822,906	-	6	66	63.37	-2.04	0.40	0.980724
1643	dm3.chr2L	12,825,535 – 12,825,643	- - - - - - - -	2249	12,825,535 – 12,825,643	+	9	115	78.17	-2.37	0.45	0.861126
1644	dm3.chr2L	12,835,967 – 12,836,096	- - - - - - - -	2250	12,835,967 – 12,836,070	+	7	105	67.23	-1.35	0.36	0.619811
				2251	12,835,967 – 12,836,070	-	7	105	67.23	-1.73	0.38	0.920719
				2252	12,836,005 – 12,836,096	+	7	104	69.08	-1.82	0.42	0.894265
				2253	12,836,005 – 12,836,096	-	7	104	69.08	-1.74	0.45	0.917649
1645	dm3.chr2L	12,836,113 – 12,836,194	- - - - - - - -	2254	12,836,113 – 12,836,194	-	6	87	82.41	-1.45	0.72	0.644928
1646	dm3.chr2L	12,840,452 – 12,840,564	- - - - - - - -	2255	12,840,452 – 12,840,564	-	5	118	71.66	-1.28	0.63	0.839047
1647	dm3.chr2L	12,847,267 – 12,847,373	- - - - - - - -	2256	12,847,267 – 12,847,373	+	12	120	92.24	-2.23	0.69	0.569865
1647	dm3.chr2L	12,847,267 – 12,847,373	- - - - - - - -	2257	12,847,267 – 12,847,373	-	12	120	92.24	-1.61	0.82	0.550643
1648	dm3.chr2L	12,849,964 – 12,850,059	- - - - - - - -	2258	12,849,964 – 12,850,059	-	6	101	83.45	-2.45	0.51	0.735983
1649	dm3.chr2L	12,851,787 – 12,851,882	- - - - - - - -	2259	12,851,787 – 12,851,882	+	5	101	89.22	-2.03	0.83	0.892402
1650	dm3.chr2L	12,853,153 – 12,853,235	- - - - - - - -	2260	12,853,153 – 12,853,235	-	6	92	83.11	-2.36	0.75	0.977296
1651	dm3.chr2L	12,856,565 – 12,856,671	- - - - - - - -	2261	12,856,565 – 12,856,671	+	12	120	91.28	-4.37	0.82	0.998978
1651	dm3.chr2L	12,856,565 – 12,856,671	- - - - - - - -	2262	12,856,565 – 12,856,671	-	12	120	91.28	-3.07	0.71	0.974496
1652	dm3.chr2L	12,857,680 – 12,857,773	- - - - - - - -	2263	12,857,680 – 12,857,773	+	6	102	69.71	-1.67	0.39	0.646090
1653	dm3.chr2L	12,863,158 – 12,863,209	- - - - - - - -	2264	12,863,158 – 12,863,209	-	6	57	79.85	-1.63	0.66	0.736830
1654	dm3.chr2L	12,866,683 – 12,866,757	- - - - - - - -	2265	12,866,683 – 12,866,757	-	6	74	92.52	-1.77	0.88	0.843322
1655	dm3.chr2L	12,871,417 – 12,871,513	- - - - - - - -	2266	12,871,417 – 12,871,513	+	8	109	76.58	-0.70	0.73	0.500000
1655	dm3.chr2L	12,871,417 – 12,871,513	- - - - - - - -	2267	12,871,417 – 12,871,513	-	8	109	76.58	-0.60	0.83	0.647600
1656	dm3.chr2L	12,874,529 – 12,874,580	- - - - - - - -	2268	12,874,529 – 12,874,580	+	4	56	82.18	-2.37	0.54	0.698341
1657	dm3.chr2L	12,884,190 – 12,884,286	- - - - - - - -	2269	12,884,190 – 12,884,286	+	7	100	75.69	-1.64	0.58	0.916135
1658	dm3.chr2L	12,886,446 – 12,886,546	- - - - - - - -	2270	12,886,446 – 12,886,542	+	11	119	86.18	-2.56	0.71	0.968552
1658	dm3.chr2L	12,886,446 – 12,886,546	- - - - - - - -	2271	12,886,446 – 12,886,546	+	11	119	86.83	-2.43	0.71	0.946124
1659	dm3.chr2L	12,886,893 – 12,886,954	- - - - - - - -	2272	12,886,893 – 12,886,954	-	8	70	59.93	-0.88	0.36	0.585370
1660	dm3.chr2L	12,891,535 – 12,891,586	- - - - - - - -	2273	12,891,535 – 12,891,586	-	3	52	85.81	-1.61	0.81	0.616147
1661	dm3.chr2L	12,899,652 – 12,899,747	- - - - - - - -	2274	12,899,652 – 12,899,747	+	6	96	59.73	-0.93	0.42	0.811054
1662	dm3.chr2L	12,900,461 – 12,900,552	- - - - - - - -	2275	12,900,461 – 12,900,552	-	12	113	72.12	-1.28	0.45	0.525997
1663	dm3.chr2L	12,901,063 – 12,901,157	- - - - - - - -	2276	12,901,063 – 12,901,154	-	6	91	95.97	-2.44	0.87	0.938840
1663	dm3.chr2L	12,901,063 – 12,901,157	- - - - - - - -	2277	12,901,063 – 12,901,157	-	6	94	93.76	-2.29	0.85	0.923036
1664	dm3.chr2L	12,903,749 – 12,903,910	- - - - - - - -	2278	12,903,749 – 12,903,849	+	11	116	66.52	-1.02	0.69	0.983284
				2279	12,903,749 – 12,903,849	-	11	116	66.52	-1.06	0.64	0.978993
				2280	12,903,769 – 12,903,885	+	11	119	73.14	-1.67	0.58	0.985378
				2281	12,903,809 – 12,903,910	+	10	104	80.86	-3.02	0.66	0.997996
1665	dm3.chr2L	12,905,137 – 12,905,210	- - - - - - - -	2282	12,905,137 – 12,905,210	-	12	95	81.93	-1.40	0.66	0.531367
1666	dm3.chr2L	12,907,641 – 12,907,732	- - - - - - - -	2283	12,907,641 – 12,907,732	+	12	107	73.96	-0.79	0.89	0.936882
1667	dm3.chr2L	12,909,297 – 12,909,397	- - - - - - - -	2284	12,909,297 – 12,909,397	-	10	105	79.86	-1.08	0.71	0.739310
1668	dm3.chr2L	12,909,442 – 12,909,516	- - - - - - - -	2285	12,909,442 – 12,909,516	+	4	74	81.86	-1.51	0.71	0.559752
1669	dm3.chr2L	12,926,903 – 12,927,015	- - CDS="CDS;ID=CDS_CG17178:4_729;Name=ACXE-cds;Parent=FBtr0080416;parent_type=mRNA" - - - - -	2286	12,926,903 – 12,927,015	+	15	121	69.22	-0.71	0.45	0.516411
1670	dm3.chr2L	12,932,487 – 12,932,588	- - - - - - - -	2287	12,932,487 – 12,932,588	-	6	104	69.30	-1.70	0.47	0.939907
1671	dm3.chr2L	12,933,282 – 12,933,375	- - - - - - - -	2288	12,933,282 – 12,933,375	+	6	104	87.79	-1.87	0.78	0.783864
1672	dm3.chr2L	12,951,267 – 12,951,333	- - - - - - - -	2289	12,951,267 – 12,951,333	-	11	71	90.26	-1.78	0.76	0.618658
1673	dm3.chr2L	12,953,617 – 12,953,722	- - - - - - - -	2290	12,953,617 – 12,953,722	-	5	112	91.84	-1.93	0.84	0.806267
1674	dm3.chr2L	12,964,755 – 12,964,859	- - - - - - - -	2291	12,964,755 – 12,964,859	+	12	121	84.07	-1.32	0.74	0.580786
1674	dm3.chr2L	12,964,755 – 12,964,859	- - - - - - - -	2292	12,964,755 – 12,964,859	-	12	121	84.07	-0.85	0.92	0.725404
1675	dm3.chr2L	12,977,316 – 12,977,419	- - CDS="CDS;ID=CDS_FBgn0020367:7_861;Name=Vha68-2-cds;Parent=FBtr0305551;parent_type=mRNA" - - - - -	2293	12,977,316 – 12,977,419	+	15	120	84.58	-1.92	0.59	0.606334
1676	dm3.chr2L	12,977,989 – 12,978,089	- - CDS="CDS;ID=CDS_FBgn0020367:9_861;Name=Vha68-2-cds;Parent=FBtr0305551;parent_type=mRNA" - - - - -	2294	12,977,989 – 12,978,089	+	15	118	79.22	-1.35	0.58	0.560425
1677	dm3.chr2L	12,982,760 – 12,982,865	- - - - - - - -	2295	12,982,760 – 12,982,865	+	12	120	91.68	-1.28	0.91	0.685248
1678	dm3.chr2L	12,985,624 – 12,985,716	- - - - - - - -	2296	12,985,624 – 12,985,716	+	11	113	87.86	-1.06	0.88	0.565229
1679	dm3.chr2L	12,993,508 – 12,993,616	- - - - - - - -	2297	12,993,508 – 12,993,616	-	5	109	90.70	-1.64	0.81	0.557023
1680	dm3.chr2L	12,998,600 – 12,998,672	- - - intron="intron;ID=intron_CG12404:3_CG12404:4;Name=CG12404-in;Parent=FBtr0080430;parent_type=mRNA" - - - -	2298	12,998,600 – 12,998,672	+	3	72	98.15	-1.49	0.95	0.741914
1681	dm3.chr2L	13,013,809 – 13,013,918	- - - - - - - -	2299	13,013,809 – 13,013,918	+	12	112	73.32	-0.88	0.52	0.630357
1682	dm3.chr2L	13,016,086 – 13,016,205	- - CDS="CDS;ID=CDS_FBgn0032467:6_792;Name=CG9934-cds;Parent=FBtr0080428,FBtr0301247;parent_type=mRNA" - - - - -	2300	13,016,086 – 13,016,205	-	14	120	65.16	-0.92	0.36	0.652047
1683	dm3.chr2L	13,017,792 – 13,017,891	- - - - - - - -	2301	13,017,792 – 13,017,891	-	7	101	61.90	-0.85	0.40	0.654556
1684	dm3.chr2L	13,025,457 – 13,025,518	- - - - - - - -	2302	13,025,457 – 13,025,518	-	14	72	74.07	-0.65	0.68	0.721036
1685	dm3.chr2L	13,026,724 – 13,026,831	- - CDS="CDS;ID=CDS_FBgn0262160:2_759;Name=CG9932-cds;Parent=FBtr0089956;parent_type=mRNA" - - - - -	2303	13,026,724 – 13,026,831	+	5	107	79.47	-1.48	0.71	0.780953
1686	dm3.chr2L	13,027,288 – 13,027,382	- - CDS="CDS;ID=CDS_FBgn0262160:2_759;Name=CG9932-cds;Parent=FBtr0089956;parent_type=mRNA" - - - - -	2304	13,027,288 – 13,027,382	+	7	94	84.34	-2.22	0.85	0.978127
1686	dm3.chr2L	13,027,288 – 13,027,382		2305	13,027,288 – 13,027,382	-	7	94	84.34	-1.29	0.91	0.853991
1687	dm3.chr2L	13,027,435 – 13,027,533	- - CDS="CDS;ID=CDS_FBgn0262160:3_701;Name=CG9932-cds;Parent=FBtr0305554;parent_type=mRNA" - - - - -	2306	13,027,435 – 13,027,533	+	11	117	75.25	-1.30	0.50	0.571995
1688	dm3.chr2L	13,032,820 – 13,032,916	- - - intron="intron;ID=intron_FBgn0262160:7_FBgn0262160:6;Name=CG9932-in;Parent=FBtr0305554,FBtr0089956;parent_type=mRNA" - - - -	2307	13,032,820 – 13,032,916	+	4	96	91.49	-1.40	0.92	0.754330
1689	dm3.chr2L	13,048,605 – 13,048,698	- - - intron="intron;ID=intron_FBgn0262160:7_FBgn0262160:6;Name=CG9932-in;Parent=FBtr0305554,FBtr0089956;parent_type=mRNA" - - - -	2308	13,048,605 – 13,048,698	+	4	98	71.03	-1.41	0.70	0.922897
1690	dm3.chr2L	13,056,068 – 13,056,193	- - - intron="intron;ID=intron_FBgn0262160:8_FBgn0262160:7;Name=CG9932-in;Parent=FBtr0305554,FBtr0089956;parent_type=mRNA" - - - -	2309	13,056,068 – 13,056,193	-	6	128	76.53	-1.56	0.50	0.514380
1691	dm3.chr2L	13,060,970 – 13,061,080	- - - - - - - -	2310	13,060,970 – 13,061,080	-	4	134	80.70	-1.34	0.76	0.617565
1692	dm3.chr2L	13,062,554 – 13,062,663	- - - - - - - -	2311	13,062,554 – 13,062,663	-	11	120	83.08	-1.00	0.80	0.525370
1693	dm3.chr2L	13,064,995 – 13,065,123	- - - - - - - -	2312	13,064,995 – 13,065,092	+	8	104	69.32	-0.91	0.64	0.956056
1693	dm3.chr2L	13,064,995 – 13,065,123	- - - - - - - -	2313	13,065,023 – 13,065,123	+	6	111	91.32	-1.51	0.94	0.883193
1694	dm3.chr2L	13,076,864 – 13,076,970	- - - - - - - -	2314	13,076,864 – 13,076,970	+	8	106	69.94	-1.02	0.45	0.567370
1694	dm3.chr2L	13,076,864 – 13,076,970	- - - - - - - -	2315	13,076,864 – 13,076,970	-	8	106	69.94	-1.66	0.41	0.878478
1695	dm3.chr2L	13,077,631 – 13,077,722	- - - - - - - -	2316	13,077,631 – 13,077,722	+	5	98	80.45	-1.82	0.65	0.679233
1696	dm3.chr2L	13,077,878 – 13,077,947	- - - - - - - -	2317	13,077,878 – 13,077,947	+	4	69	91.79	-2.37	0.76	0.813888
1696	dm3.chr2L	13,077,878 – 13,077,947	- - - - - - - -	2318	13,077,878 – 13,077,947	-	4	69	91.79	-2.78	0.73	0.915929
1697	dm3.chr2L	13,081,501 – 13,081,606	- - - - - - - -	2319	13,081,501 – 13,081,606	-	11	115	78.10	-1.76	0.41	0.541985
1698	dm3.chr2L	13,100,575 – 13,100,671	- - - - - - - -	2320	13,100,575 – 13,100,671	+	9	96	94.97	-1.76	0.95	0.928664
1699	dm3.chr2L	13,109,198 – 13,109,315	- - CDS="CDS;ID=CDS_FBgn0032470:5_870;Name=CG5142-cds;Parent=FBtr0301366;parent_type=mRNA" - - - - -	2321	13,109,198 – 13,109,315	+	14	119	72.76	-1.69	0.47	0.971358
1700	dm3.chr2L	13,109,655 – 13,109,746	- - - - - - - -	2322	13,109,655 – 13,109,746	+	9	103	73.87	-2.92	0.49	0.996779
1700	dm3.chr2L	13,109,655 – 13,109,746	- - - - - - - -	2323	13,109,655 – 13,109,746	-	9	103	73.87	-1.95	0.36	0.500000
1701	dm3.chr2L	13,122,303 – 13,122,402	- - - - - - - -	2324	13,122,303 – 13,122,402	-	12	116	77.20	-1.06	0.65	0.756264
1702	dm3.chr2L	13,125,801 – 13,125,904	- - - - - - - -	2325	13,125,801 – 13,125,904	+	6	109	74.60	-2.02	0.39	0.614554
1703	dm3.chr2L	13,129,711 – 13,129,829	- - - - - - - -	2326	13,129,711 – 13,129,829	-	3	118	80.74	-1.39	0.81	0.661262
1704	dm3.chr2L	13,131,553 – 13,131,646	- - CDS="CDS;ID=CDS_FBgn0032471:2_850;Name=CG5122-cds;Parent=FBtr0080431;parent_type=mRNA" - - - - -	2327	13,131,553 – 13,131,646	+	6	102	63.32	-2.16	0.33	0.971154
1705	dm3.chr2L	13,142,862 – 13,142,932	- - - - - - - -	2328	13,142,862 – 13,142,932	+	9	76	67.57	-1.46	0.38	0.784677
1706	dm3.chr2L	13,143,613 – 13,143,722	- - CDS="CDS;ID=CDS_CG16978:2_734;Name=CG16978-cds;Parent=FBtr0080495;parent_type=mRNA" - - - - -	2329	13,143,613 – 13,143,722	-	5	109	93.03	-2.02	0.90	0.927766
1707	dm3.chr2L	13,145,392 – 13,145,523	- - - - - - - -	2330	13,145,392 – 13,145,494	+	12	118	70.90	-0.99	0.47	0.500000
1707	dm3.chr2L	13,145,392 – 13,145,523	- - - - - - - -	2331	13,145,421 – 13,145,523	+	9	112	60.08	-0.64	0.53	0.942204
1708	dm3.chr2L	13,148,451 – 13,148,551	- - - - - - - -	2332	13,148,451 – 13,148,551	-	9	118	74.85	-1.13	0.58	0.579829
1709	dm3.chr2L	13,150,610 – 13,150,701	- - - - - - - -	2333	13,150,610 – 13,150,701	-	5	105	85.76	-2.14	0.66	0.671648
1710	dm3.chr2L	13,151,581 – 13,151,707	- - - - - - - -	2334	13,151,581 – 13,151,707	+	7	128	68.77	-1.12	0.56	0.941091
1711	dm3.chr2L	13,152,040 – 13,152,145	- - - - - - - -	2335	13,152,040 – 13,152,145	-	8	112	69.45	-1.50	0.42	0.810852
1712	dm3.chr2L	13,164,406 – 13,164,472	- - CDS="CDS;ID=CDS_CG9828:3_719;Name=DnaJ-H-cds;Parent=FBtr0080493,FBtr0080494;parent_type=mRNA" - - - - -	2336	13,164,406 – 13,164,472	-	13	68	72.35	-0.45	0.56	0.539771
1713	dm3.chr2L	13,173,536 – 13,173,633	- - CDS="CDS;ID=CDS_FBgn0032475:6_747;Name=Sfmbt-cds;Parent=FBtr0080491;parent_type=mRNA" - - - - -	2337	13,173,536 – 13,173,633	-	13	118	71.31	-1.60	0.38	0.582721
1714	dm3.chr2L	13,190,013 – 13,190,149	- - - intron="intron;ID=intron_FBgn0032479:6_FBgn0032479:5;Name=CG16974-in;Parent=FBtr0305555;parent_type=mRNA" - - - -	2338	13,190,013 – 13,190,110	-	5	100	86.80	-2.67	0.75	0.971827
				2339	13,190,050 – 13,190,149	+	6	101	72.91	-1.72	0.41	0.636517
				2340	13,190,050 – 13,190,149	-	6	101	72.91	-1.97	0.37	0.668239
1715	dm3.chr2L	13,191,494 – 13,191,635	- - - intron="intron;ID=intron_FBgn0032479:6_FBgn0032479:5;Name=CG16974-in;Parent=FBtr0305555;parent_type=mRNA" - - - -	2341	13,191,494 – 13,191,595	+	7	104	69.02	-2.95	0.30	0.970249
1715	dm3.chr2L	13,191,494 – 13,191,635		2342	13,191,525 – 13,191,635	+	7	111	66.09	-2.89	0.48	0.999519
1716	dm3.chr2L	13,194,512 – 13,194,605	- - - intron="intron;ID=intron_CG5682:4_CG5682:5;Name=Edem2-in;Parent=FBtr0080438;parent_type=mRNA" - - - -	2343	13,194,512 – 13,194,605	+	8	97	65.80	-0.72	0.50	0.749772
1717	dm3.chr2L	13,194,996 – 13,195,094	- - - intron="intron;ID=intron_CG5682:5_CG5682:6;Name=Edem2-in;Parent=FBtr0080438;parent_type=mRNA" - - - -	2344	13,194,996 – 13,195,094	+	5	114	67.80	-1.12	0.48	0.500000
1717	dm3.chr2L	13,194,996 – 13,195,094		2345	13,194,996 – 13,195,094	-	5	114	67.80	-0.82	0.59	0.646162
1718	dm3.chr2L	13,196,133 – 13,196,184	- - CDS="CDS;ID=CDS_CG5682:8_754;Name=Edem2-cds;Parent=FBtr0080438;parent_type=mRNA" - - - - -	2346	13,196,133 – 13,196,184	+	8	54	72.60	-0.90	0.53	0.561261
1719	dm3.chr2L	13,202,083 – 13,202,202	- - CDS="CDS;ID=CDS_CG16972:2_719;Name=CG16972-cds;Parent=FBtr0080488;parent_type=mRNA" - - - - -	2347	13,202,083 – 13,202,202	-	8	121	67.81	-1.06	0.39	0.542573
1720	dm3.chr2L	13,209,552 – 13,209,643	- - - intron="intron;ID=intron_CG5547:10_CG5547:6;Name=Pect-in;Parent=FBtr0080442;parent_type=mRNA" - - - -	2348	13,209,552 – 13,209,643	+	10	110	61.22	-0.35	0.54	0.850116
1721	dm3.chr2L	13,212,002 – 13,212,113	FBnoncoding="snRNA;ID=FBtr0080486;Name=snRNA:U2:34ABa-RA;Parent=FBgn0004191;Dbxref=FlyBase_Annotation_IDs:CR31850-RA,REFSEQ:NR_001645;score_text=Weakly" - - - "Rfam_10.0=RF00004;U2;AANI01017247.1/37186-37381\|2.5e-51" "Noncode_2.0=n5383_u364_X04246_snRNA_Drosophila\|2.7e-57" "unique_Noncode_2.0=u4720_snRNA_Drosophila\|2.4e-57" -	2349	13,212,002 – 13,212,113	+	13	117	91.41	-5.25	0.75	0.999460
1721	dm3.chr2L	13,212,002 – 13,212,113		2350	13,212,002 – 13,212,113	-	13	117	91.41	-2.72	0.77	0.973737
1722	dm3.chr2L	13,215,801 – 13,216,042	FBnoncoding="snRNA;ID=FBtr0080443;Name=snRNA:U2:34ABb-RA;Parent=FBgn0004192;Dbxref=FlyBase_Annotation_IDs:CR31854-RA,REFSEQ:NR_001646;score_text=Weakly" - - - "Rfam_10.0=RF00004;U2;AANI01017247.1/37186-37381\|6.5e-94" "Noncode_2.0=n377_u357_AE003639_snRNA_Drosophila\|3e-105" "unique_Noncode_2.0=u357_snRNA_Drosophila\|3e-105" -	2351	13,215,801 – 13,215,909	+	14	111	78.28	-0.90	0.55	0.500000
				2352	13,215,801 – 13,215,909	-	14	111	78.28	-1.30	0.61	0.915965
				2353	13,215,832 – 13,215,941	+	14	112	90.31	-2.96	0.87	0.995857
				2354	13,215,832 – 13,215,941	-	14	112	90.31	-5.18	0.93	0.999005
				2355	13,215,869 – 13,215,979	+	14	112	88.57	-2.35	0.86	0.987065
				2356	13,215,869 – 13,215,979	-	14	112	88.57	-5.00	0.81	0.999512
				2357	13,215,909 – 13,216,012	+	13	103	95.47	-0.79	0.99	0.589429
				2358	13,215,941 – 13,216,042	+	14	109	84.94	-1.30	0.87	0.894717
1723	dm3.chr2L	13,244,465 – 13,244,534	FBnoncoding="snRNA;ID=FBtr0091789;Name=snRNA:U2:34ABc-RA;Parent=FBgn0041720;Dbxref=FlyBase_Annotation_IDs:CR33788-RA,REFSEQ:NR_002513;score_text=Weakly" - - - "Rfam_10.0=RF00004;U2;AASU01039518.1/2204-2353\|2.6e-28" "Noncode_2.0=n5384_u4723_X04247_snRNA_Drosophila\|1.7e-32" "unique_Noncode_2.0=u4723_snRNA_Drosophila\|1.6e-32" -	2359	13,244,465 – 13,244,534	+	14	75	86.99	-2.41	0.74	0.974281
1724	dm3.chr2L	13,244,895 – 13,244,987	FBnoncoding="snRNA;ID=FBtr0080451;Name=snRNA:U5:34A-RA;Parent=FBgn0003935;Dbxref=FlyBase_Annotation_IDs:CR31853-RA,REFSEQ:NR_001647;score_text=Weakly" - - - "Rfam_10.0=RF00020;U5;AABU01002759.1/8079032-8079152\|4.1e-34" "Noncode_2.0=n375_u355_AE003639_snRNA_Drosophila\|2.7e-38" "unique_Noncode_2.0=u355_snRNA_Drosophila\|2.4e-38" -	2360	13,244,895 – 13,244,987	+	13	100	73.19	-2.16	0.80	0.998800
1725	dm3.chr2L	13,251,845 – 13,251,939	- - - - - - - -	2361	13,251,845 – 13,251,939	+	8	108	69.24	-0.91	0.55	0.623181
1726	dm3.chr2L	13,261,570 – 13,261,668	- - - - - - - -	2362	13,261,570 – 13,261,668	-	8	108	79.83	-1.88	0.50	0.500000
1727	dm3.chr2L	13,283,377 – 13,283,478	- - - - - - - -	2363	13,283,377 – 13,283,478	+	11	114	67.84	-1.74	0.34	0.790282
1728	dm3.chr2L	13,322,184 – 13,322,290	- - - - - - - -	2364	13,322,184 – 13,322,283	+	11	117	73.85	-2.00	0.47	0.929604
				2365	13,322,184 – 13,322,283	-	11	117	73.85	-1.73	0.45	0.767026
				2366	13,322,191 – 13,322,290	+	11	117	75.29	-2.47	0.49	0.983283
				2367	13,322,191 – 13,322,290	-	11	117	75.29	-2.25	0.42	0.893214
1729	dm3.chr2L	13,326,713 – 13,326,835	- - - - - - - -	2368	13,326,713 – 13,326,835	+	9	133	72.08	-1.09	0.52	0.709731
1730	dm3.chr2L	13,335,386 – 13,335,508	- - - - - - - -	2369	13,335,386 – 13,335,477	-	10	113	78.98	-1.89	0.72	0.964593
				2370	13,335,405 – 13,335,508	+	11	119	84.53	-2.57	0.74	0.986044
				2371	13,335,405 – 13,335,508	-	11	119	84.53	-2.11	0.70	0.918400
1731	dm3.chr2L	13,354,394 – 13,354,486	- - - - - - - -	2372	13,354,394 – 13,354,486	+	12	111	70.10	-0.97	0.59	0.885295
1731	dm3.chr2L	13,354,394 – 13,354,486	- - - - - - - -	2373	13,354,394 – 13,354,486	-	12	111	70.10	-1.78	0.79	0.996867
1732	dm3.chr2L	13,361,830 – 13,361,891	- - - - - - - -	2374	13,361,830 – 13,361,891	+	7	72	69.39	-1.67	0.43	0.821481
1733	dm3.chr2L	13,361,946 – 13,362,044	- - - - - - - -	2375	13,361,946 – 13,362,044	-	12	110	64.53	-1.75	0.23	0.500000
1734	dm3.chr2L	13,402,293 – 13,402,401	- - - intron="intron;ID=intron_FBgn0032521:2_FBgn0032521:3;Name=CG7110-in;Parent=FBtr0080500;parent_type=mRNA" - - - -	2376	13,402,293 – 13,402,401	+	9	115	72.27	-2.21	0.36	0.843280
1735	dm3.chr2L	13,404,758 – 13,404,865	- - CDS="CDS;ID=CDS_FBgn0032521:6_790;Name=CG7110-cds;Parent=FBtr0080500;parent_type=mRNA" - - - - -	2377	13,404,758 – 13,404,865	+	9	113	63.72	-1.30	0.31	0.531835
1736	dm3.chr2L	13,415,143 – 13,415,277	- - - - - - - -	2378	13,415,143 – 13,415,251	+	6	114	78.58	-1.53	0.63	0.759208
				2379	13,415,178 – 13,415,277	+	6	114	71.44	-1.01	0.62	0.738481
				2380	13,415,178 – 13,415,277	-	6	114	71.44	-1.31	0.64	0.916014
1737	dm3.chr2L	13,417,343 – 13,417,441	- - - - - - - -	2381	13,417,343 – 13,417,441	+	4	99	94.94	-1.49	0.93	0.754971
1737	dm3.chr2L	13,417,343 – 13,417,441	- - - - - - - -	2382	13,417,343 – 13,417,441	-	4	99	94.94	-1.93	0.93	0.922133
1738	dm3.chr2L	13,432,694 – 13,432,804	- - - - - - - -	2383	13,432,694 – 13,432,795	+	5	101	79.01	-3.44	0.64	0.998833
				2384	13,432,694 – 13,432,795	-	5	101	79.01	-2.55	0.44	0.852597
				2385	13,432,701 – 13,432,804	+	5	103	77.18	-1.56	0.55	0.592799
1739	dm3.chr2L	13,443,317 – 13,443,422	- - - - - - - -	2386	13,443,317 – 13,443,422	+	9	112	67.12	-1.14	0.43	0.729345
1740	dm3.chr2L	13,458,104 – 13,458,171	- - - - - - - -	2387	13,458,104 – 13,458,171	+	6	73	80.68	-3.01	0.30	0.575348
1741	dm3.chr2L	13,461,389 – 13,461,496	- - - - - - - -	2388	13,461,389 – 13,461,496	+	5	107	92.70	-1.75	0.84	0.658876
1741	dm3.chr2L	13,461,389 – 13,461,496	- - - - - - - -	2389	13,461,389 – 13,461,496	-	5	107	92.70	-2.35	0.90	0.970727
1742	dm3.chr2L	13,465,375 – 13,465,487	FBnoncoding="ncRNA;ID=FBtr0303312;Name=CR31846-RB;Parent=FBgn0051846;Dbxref=FlyBase_Annotation_IDs:CR31846-RB;score_text=Strongly" - - - - - - -	2390	13,465,375 – 13,465,483	-	7	111	62.94	-1.66	0.29	0.749536
1742	dm3.chr2L	13,465,375 – 13,465,487		2391	13,465,379 – 13,465,487	-	7	111	61.10	-1.04	0.33	0.539458
1743	dm3.chr2L	13,467,775 – 13,467,916	FBnoncoding="ncRNA;ID=FBtr0303312;Name=CR31846-RB;Parent=FBgn0051846;Dbxref=FlyBase_Annotation_IDs:CR31846-RB;score_text=Strongly" - - - - - - -	2392	13,467,775 – 13,467,879	+	3	104	98.72	-1.55	0.91	0.556692
				2393	13,467,809 – 13,467,916	+	3	107	95.02	-2.22	0.84	0.820989
				2394	13,467,809 – 13,467,916	-	3	107	95.02	-1.02	0.99	0.704486
1744	dm3.chr2L	13,475,987 – 13,476,080	FBnoncoding="ncRNA;ID=FBtr0303312;Name=CR31846-RB;Parent=FBgn0051846;Dbxref=FlyBase_Annotation_IDs:CR31846-RB;score_text=Strongly" - CDS="CDS;ID=CDS_FBgn0261855:1_838;Name=CG42784-cds;Parent=FBtr0303438;parent_type=mRNA" - - - - -	2395	13,475,987 – 13,476,080	-	12	120	73.55	-1.78	0.40	0.529263
1745	dm3.chr2L	13,481,084 – 13,481,179	FBnoncoding="ncRNA;ID=FBtr0303312;Name=CR31846-RB;Parent=FBgn0051846;Dbxref=FlyBase_Annotation_IDs:CR31846-RB;score_text=Strongly" - - intron="intron;ID=intron_FBgn0261855:1_FBgn0261855:5;Name=CG42784-in;Parent=FBtr0303438;parent_type=mRNA" - - - -	2396	13,481,084 – 13,481,179	+	5	117	79.87	-1.67	0.70	0.826752
1746	dm3.chr2L	13,484,543 – 13,484,679	FBnoncoding="ncRNA;ID=FBtr0303312;Name=CR31846-RB;Parent=FBgn0051846;Dbxref=FlyBase_Annotation_IDs:CR31846-RB;score_text=Strongly" - - intron="intron;ID=intron_FBgn0261855:1_FBgn0261855:5;Name=CG42784-in;Parent=FBtr0303438;parent_type=mRNA" - - - -	2397	13,484,543 – 13,484,648	+	7	114	85.67	-2.69	0.75	0.984995
				2398	13,484,543 – 13,484,648	-	7	114	85.67	-2.24	0.82	0.972789
				2399	13,484,582 – 13,484,679	+	5	97	98.56	-4.00	1.00	0.998624
				2400	13,484,582 – 13,484,679	-	5	97	98.56	-1.37	1.00	0.866260
1747	dm3.chr2L	13,487,063 – 13,487,199	- - - intron="intron;ID=intron_FBgn0261855:1_FBgn0261855:5;Name=CG42784-in;Parent=FBtr0303438;parent_type=mRNA" - - - -	2401	13,487,063 – 13,487,163	-	11	110	70.99	-1.56	0.36	0.577509
1747	dm3.chr2L	13,487,063 – 13,487,199		2402	13,487,096 – 13,487,199	+	12	114	79.70	-1.83	0.57	0.867931
1748	dm3.chr2L	13,488,230 – 13,488,340	- - - intron="intron;ID=intron_FBgn0261855:2_FBgn0261855:4;Name=CG42784-in;Parent=FBtr0303439;parent_type=mRNA" - - - -	2403	13,488,230 – 13,488,340	-	12	120	96.32	-1.36	0.96	0.786901
1749	dm3.chr2L	13,488,436 – 13,488,565	- - - intron="intron;ID=intron_FBgn0261855:2_FBgn0261855:4;Name=CG42784-in;Parent=FBtr0303439;parent_type=mRNA" - - - -	2404	13,488,436 – 13,488,535	+	10	112	75.37	-2.84	0.22	0.565440
				2405	13,488,436 – 13,488,535	-	10	112	75.37	-3.95	0.55	0.999820
				2406	13,488,468 – 13,488,565	+	11	113	76.32	-2.80	0.35	0.924164
1750	dm3.chr2L	13,498,691 – 13,498,790	- - CDS="CDS;ID=CDS_FBgn0261855:8_841;Name=CG42784-cds;Parent=FBtr0303439,FBtr0303440;parent_type=mRNA" - - - - -	2407	13,498,691 – 13,498,790	-	12	104	65.35	-1.38	0.37	0.839865
1751	dm3.chr2L	13,499,485 – 13,499,579	- - - - - - - -	2408	13,499,485 – 13,499,579	-	7	106	69.70	-1.33	0.43	0.607310
1752	dm3.chr2L	13,513,657 – 13,513,731	- - - intron="intron;ID=intron_CG9239:3_CG9239:4;Name=B4-in;Parent=FBtr0080513,FBtr0080514;parent_type=mRNA" - - - -	2409	13,513,657 – 13,513,731	+	6	81	74.25	-1.70	0.62	0.939159
1753	dm3.chr2L	13,514,702 – 13,514,812	- - - intron="intron;ID=intron_CG9239:3_CG9239:4;Name=B4-in;Parent=FBtr0080513,FBtr0080514;parent_type=mRNA" - - - -	2410	13,514,702 – 13,514,812	+	4	118	75.29	-1.61	0.67	0.849315
1754	dm3.chr2L	13,514,905 – 13,515,048	- - - intron="intron;ID=intron_CG9239:3_CG9239:4;Name=B4-in;Parent=FBtr0080513,FBtr0080514;parent_type=mRNA" - - - -	2411	13,514,905 – 13,515,048	-	10	148	73.72	-1.56	0.45	0.820529
1755	dm3.chr2L	13,534,290 – 13,534,422	- - - - - - - -	2412	13,534,290 – 13,534,385	+	4	105	74.79	-3.20	0.39	0.970907
1755	dm3.chr2L	13,534,290 – 13,534,422	- - - - - - - -	2413	13,534,320 – 13,534,422	-	4	113	81.15	-2.85	0.46	0.814732
1756	dm3.chr2L	13,537,205 – 13,537,297	- - - intron="intron;ID=intron_CG9239:2_CG9239:3;Name=B4-in;Parent=FBtr0080513,FBtr0080514;parent_type=mRNA" - - - -	2414	13,537,205 – 13,537,297	+	7	103	66.27	-2.65	0.37	0.992998
1756	dm3.chr2L	13,537,205 – 13,537,297		2415	13,537,205 – 13,537,297	-	7	103	66.27	-3.22	0.45	0.999632
1757	dm3.chr2L	13,548,801 – 13,548,860	- - - - - - - -	2416	13,548,801 – 13,548,860	+	6	62	86.40	-2.15	0.82	0.960146
1757	dm3.chr2L	13,548,801 – 13,548,860	- - - - - - - -	2417	13,548,801 – 13,548,860	-	6	62	86.40	-1.94	0.83	0.936641
1758	dm3.chr2L	13,553,193 – 13,553,291	- - - intron="intron;ID=intron_FBgn0259984:4_FBgn0259984:5;Name=kuz-in;Parent=FBtr0080509,FBtr0080510,FBtr0100660,FBtr0112886,FBtr0301412;parent_type=mRNA" - - - -	2418	13,553,193 – 13,553,291	+	6	99	71.47	-2.22	0.34	0.804199
1759	dm3.chr2L	13,554,202 – 13,554,260	- - - intron="intron;ID=intron_FBgn0259984:4_FBgn0259984:5;Name=kuz-in;Parent=FBtr0080509,FBtr0080510,FBtr0100660,FBtr0112886,FBtr0301412;parent_type=mRNA" - - - -	2419	13,554,202 – 13,554,260	+	4	60	68.08	-1.23	0.50	0.509006
1760	dm3.chr2L	13,570,208 – 13,570,301	- - - intron="intron;ID=intron_FBgn0259984:5_FBgn0259984:6;Name=kuz-in;Parent=FBtr0112886;parent_type=mRNA" - - - -	2420	13,570,208 – 13,570,301	+	10	109	73.89	-2.67	0.42	0.984214
1760	dm3.chr2L	13,570,208 – 13,570,301		2421	13,570,208 – 13,570,301	-	10	109	73.89	-1.96	0.48	0.935396
1761	dm3.chr2L	13,575,485 – 13,575,535	- - - intron="intron;ID=intron_FBgn0259984:5_FBgn0259984:6;Name=kuz-in;Parent=FBtr0112886;parent_type=mRNA" - - - -	2422	13,575,485 – 13,575,535	+	4	50	92.33	-1.60	0.94	0.881404
1761	dm3.chr2L	13,575,485 – 13,575,535		2423	13,575,485 – 13,575,535	-	4	50	92.33	-1.25	0.98	0.849258
1762	dm3.chr2L	13,576,388 – 13,576,484	- - - intron="intron;ID=intron_FBgn0259984:5_FBgn0259984:6;Name=kuz-in;Parent=FBtr0112886;parent_type=mRNA" - - - -	2424	13,576,388 – 13,576,484	-	5	120	65.68	-1.92	0.37	0.794561
1763	dm3.chr2L	13,581,771 – 13,581,869	- - - intron="intron;ID=intron_FBgn0259984:6_FBgn0259984:7;Name=kuz-in;Parent=FBtr0112886;parent_type=mRNA" - - - -	2425	13,581,771 – 13,581,869	+	4	107	87.25	-1.14	0.98	0.865269
1764	dm3.chr2L	13,585,388 – 13,585,483	- - - intron="intron;ID=intron_FBgn0259984:6_FBgn0259984:7;Name=kuz-in;Parent=FBtr0112886;parent_type=mRNA" - - - -	2426	13,585,388 – 13,585,483	-	5	113	55.56	-0.95	0.38	0.593062
1765	dm3.chr2L	13,593,591 – 13,593,704	- - - intron="intron;ID=intron_FBgn0259984:6_FBgn0259984:7;Name=kuz-in;Parent=FBtr0112886;parent_type=mRNA" - - - -	2427	13,593,591 – 13,593,704	+	6	120	54.77	-1.18	0.30	0.581679
1766	dm3.chr2L	13,615,795 – 13,615,896	- - - intron="intron;ID=intron_FBgn0259984:8_FBgn0259984:9;Name=kuz-in;Parent=FBtr0080509,FBtr0080510,FBtr0100660,FBtr0112886,FBtr0301412;parent_type=mRNA" - - - -	2428	13,615,795 – 13,615,896	+	12	103	85.32	-2.12	0.78	0.966591
1767	dm3.chr2L	13,622,266 – 13,622,332	- - - intron="intron;ID=intron_FBgn0259984:8_FBgn0259984:9;Name=kuz-in;Parent=FBtr0080509,FBtr0080510,FBtr0100660,FBtr0112886,FBtr0301412;parent_type=mRNA" - - - -	2429	13,622,266 – 13,622,332	+	7	72	61.27	-0.93	0.41	0.777066
1768	dm3.chr2L	13,627,432 – 13,627,548	- - - intron="intron;ID=intron_FBgn0259984:8_FBgn0259984:9;Name=kuz-in;Parent=FBtr0080509,FBtr0080510,FBtr0100660,FBtr0112886,FBtr0301412;parent_type=mRNA" - - - -	2430	13,627,432 – 13,627,548	+	4	119	92.06	-2.68	0.93	0.991188
1768	dm3.chr2L	13,627,432 – 13,627,548		2431	13,627,432 – 13,627,548	-	4	119	92.06	-2.81	0.84	0.979727
1769	dm3.chr2L	13,632,865 – 13,632,963	- - - intron="intron;ID=intron_FBgn0259984:9_FBgn0259984:10;Name=kuz-in;Parent=FBtr0080509,FBtr0080510,FBtr0100660,FBtr0112886,FBtr0301412;parent_type=mRNA" - - - -	2432	13,632,865 – 13,632,963	-	9	105	75.88	-1.36	0.64	0.917987
1770	dm3.chr2L	13,644,903 – 13,644,994	- - - - - - - -	2433	13,644,903 – 13,644,994	+	10	95	78.32	-1.52	0.62	0.878822
1771	dm3.chr2L	13,673,380 – 13,673,510	- - - - - - - -	2434	13,673,380 – 13,673,510	-	12	146	75.26	-1.93	0.48	0.946070
1772	dm3.chr2L	13,674,493 – 13,674,594	- - - - - - - -	2435	13,674,493 – 13,674,594	-	5	101	78.17	-1.87	0.72	0.896626
1773	dm3.chr2L	13,693,094 – 13,693,216	- - - intron="intron;ID=intron_CG31814:2_CG31814:3;Name=CG31814-in;Parent=FBtr0080580;parent_type=mRNA" - - - -	2436	13,693,094 – 13,693,202	-	12	120	93.14	-1.36	0.97	0.879317
				2437	13,693,123 – 13,693,216	+	12	119	87.52	-2.03	0.80	0.908684
				2438	13,693,123 – 13,693,216	-	12	119	87.52	-1.49	0.84	0.742397
1774	dm3.chr2L	13,703,470 – 13,703,594	- - - intron="intron;ID=intron_CG31814:2_CG31814:3;Name=CG31814-in;Parent=FBtr0080580;parent_type=mRNA" - - - -	2439	13,703,470 – 13,703,594	+	5	124	92.10	-2.35	0.81	0.907544
1775	dm3.chr2L	13,706,349 – 13,706,463	- - - intron="intron;ID=intron_CG31814:2_CG31814:3;Name=CG31814-in;Parent=FBtr0080580;parent_type=mRNA" - - - -	2440	13,706,349 – 13,706,463	-	12	120	89.72	-2.38	0.68	0.849420
1776	dm3.chr2L	13,706,590 – 13,706,683	- - - intron="intron;ID=intron_CG31814:2_CG31814:3;Name=CG31814-in;Parent=FBtr0080580;parent_type=mRNA" - - - -	2441	13,706,590 – 13,706,683	+	3	93	96.74	-1.73	0.99	0.941595
1776	dm3.chr2L	13,706,590 – 13,706,683		2442	13,706,590 – 13,706,683	-	3	93	96.74	-1.50	0.94	0.740686
1777	dm3.chr2L	13,706,726 – 13,706,853	- - - intron="intron;ID=intron_CG31814:2_CG31814:3;Name=CG31814-in;Parent=FBtr0080580;parent_type=mRNA" - - - -	2443	13,706,726 – 13,706,825	+	11	115	71.32	-0.81	0.56	0.661450
				2444	13,706,726 – 13,706,825	-	11	115	71.32	-1.49	0.47	0.860589
				2445	13,706,753 – 13,706,853	+	11	109	69.03	-1.68	0.30	0.602802
				2446	13,706,753 – 13,706,853	-	11	109	69.03	-2.11	0.24	0.640419
1778	dm3.chr2L	13,727,105 – 13,727,241	- - - - - - - -	2447	13,727,105 – 13,727,210	+	4	105	77.30	-2.37	0.67	0.981213
1778	dm3.chr2L	13,727,105 – 13,727,241	- - - - - - - -	2448	13,727,142 – 13,727,241	+	9	115	72.71	-1.58	0.47	0.701223
1779	dm3.chr2L	13,728,315 – 13,728,432	- - - - - - - -	2449	13,728,315 – 13,728,432	+	11	118	62.70	-1.52	0.24	0.513686
1780	dm3.chr2L	13,728,925 – 13,729,066	- - - - - - - -	2450	13,728,925 – 13,729,016	-	12	107	69.30	-0.93	0.61	0.953148
				2451	13,728,943 – 13,729,048	-	12	117	80.40	-1.35	0.78	0.895437
				2452	13,728,976 – 13,729,066	-	11	105	75.85	-1.14	0.62	0.825907
1781	dm3.chr2L	13,735,228 – 13,735,279	- - - - - - - -	2453	13,735,228 – 13,735,279	-	7	55	83.10	-1.63	0.76	0.830563
1782	dm3.chr2L	13,739,286 – 13,739,384	- - - - - - - -	2454	13,739,286 – 13,739,384	-	5	98	76.67	-1.73	0.67	0.866367
1783	dm3.chr2L	13,747,739 – 13,747,830	FBnoncoding="pre_miRNA;ID=FBtr0304512;Name=mir-968-RM;Parent=FBgn0262332;Alias=CR43039-RM;Dbxref=FlyBase_Annotation_IDs:CR43039-RM,miRBase:MI0005825" - - - - - - "mirBase_v16=dme-mir-968\|2.1e-42"	2455	13,747,739 – 13,747,830	+	9	96	78.58	-2.33	0.75	0.994698
1783	dm3.chr2L	13,747,739 – 13,747,830		2456	13,747,739 – 13,747,830	-	9	96	78.58	-4.76	0.74	0.999801
1784	dm3.chr2L	13,763,337 – 13,763,421	- - - - - - - -	2457	13,763,337 – 13,763,421	-	6	90	59.53	-0.46	0.44	0.510058
1785	dm3.chr2L	13,771,113 – 13,771,207	- - - - - - - -	2458	13,771,113 – 13,771,207	+	5	98	94.56	-2.87	0.80	0.956807
1785	dm3.chr2L	13,771,113 – 13,771,207	- - - - - - - -	2459	13,771,113 – 13,771,207	-	5	98	94.56	-3.41	0.89	0.995639
1786	dm3.chr2L	13,772,896 – 13,772,992	- - - - - - - -	2460	13,772,896 – 13,772,992	-	12	105	63.37	-0.44	0.45	0.691129
1787	dm3.chr2L	13,774,947 – 13,775,056	- - CDS="CDS;ID=CDS_CG9008:15_739;Name=CG9008-cds;Parent=FBtr0080577;parent_type=mRNA" - - - - -	2461	13,774,947 – 13,775,056	+	12	117	84.22	-1.53	0.69	0.677065
1788	dm3.chr2L	13,812,356 – 13,812,478	- - - intron="intron;ID=intron_FBgn0028919:3_FBgn0028919:4;Name=CG16865-in;Parent=FBtr0080540;parent_type=mRNA" - - - -	2462	13,812,356 – 13,812,478	+	5	130	82.20	-2.81	0.64	0.975931
1789	dm3.chr2L	13,812,992 – 13,813,106	- - CDS="CDS;ID=CDS_FBgn0032533:1_848;Name=CG16888-cds;Parent=FBtr0080572;parent_type=mRNA" - - - - -	2463	13,812,992 – 13,813,106	-	7	115	67.21	-0.91	0.46	0.751177
1790	dm3.chr2L	13,813,146 – 13,813,250	- - CDS="CDS;ID=CDS_FBgn0032533:1_848;Name=CG16888-cds;Parent=FBtr0080572;parent_type=mRNA" - - - - -	2464	13,813,146 – 13,813,250	+	7	109	61.14	-1.24	0.35	0.812512
1791	dm3.chr2L	13,827,776 – 13,827,826	- - - - - - - -	2465	13,827,776 – 13,827,826	-	6	55	74.43	-0.70	0.87	0.828278
1792	dm3.chr2L	13,835,541 – 13,835,661	- - - - - - - -	2466	13,835,541 – 13,835,661	-	5	120	97.50	-2.80	0.94	0.988845
1793	dm3.chr2L	13,888,096 – 13,888,200	- - - intron="intron;ID=intron_CG31811:9_CG31811:2;Name=cenG1A-in;Parent=FBtr0080547;parent_type=mRNA" - - - -	2467	13,888,096 – 13,888,197	-	4	104	95.49	-1.37	0.91	0.539893
1793	dm3.chr2L	13,888,096 – 13,888,200		2468	13,888,099 – 13,888,200	-	4	104	95.49	-2.07	0.95	0.956583
1794	dm3.chr2L	13,891,948 – 13,892,042	- - - intron="intron;ID=intron_CG31811:2_CG31811:3;Name=cenG1A-in;Parent=FBtr0080546,FBtr0080547;parent_type=mRNA" - - - -	2469	13,891,948 – 13,892,042	-	6	105	76.61	-1.26	0.72	0.817768
1795	dm3.chr2L	13,894,169 – 13,894,291	- - - intron="intron;ID=intron_CG31811:2_CG31811:3;Name=cenG1A-in;Parent=FBtr0080546,FBtr0080547;parent_type=mRNA" - - - -	2470	13,894,169 – 13,894,260	+	12	111	68.23	-1.99	0.30	0.729487
1795	dm3.chr2L	13,894,169 – 13,894,291		2471	13,894,194 – 13,894,291	+	4	97	96.91	-2.21	0.96	0.970498
1796	dm3.chr2L	13,919,429 – 13,919,529	- - - intron="intron;ID=intron_CG17988:7_CG17988:8;Name=Ance-3-in;Parent=FBtr0100327;parent_type=mRNA" - - - -	2472	13,919,429 – 13,919,529	+	11	110	80.88	-2.44	0.53	0.949656
1797	dm3.chr2L	13,929,511 – 13,929,615	- - - - - - - -	2473	13,929,511 – 13,929,615	-	12	116	81.23	-1.39	0.63	0.585869
1798	dm3.chr2L	13,941,173 – 13,941,242	- - - - - "Noncode_2.0=n374_u354_AE003634_bft\|1.3e-11" "unique_Noncode_2.0=u354_bft\|1.2e-11" -	2474	13,941,173 – 13,941,242	+	8	69	85.76	-1.62	0.74	0.650414
1799	dm3.chr2L	13,944,811 – 13,944,960	- - - - - - - -	2475	13,944,811 – 13,944,920	-	11	119	76.26	-2.93	0.71	0.999285
1799	dm3.chr2L	13,944,811 – 13,944,960	- - - - - - - -	2476	13,944,850 – 13,944,960	-	12	118	73.86	-2.97	0.60	0.999533
1800	dm3.chr2L	13,973,822 – 13,973,924	- - - - - - - -	2477	13,973,822 – 13,973,924	+	3	102	91.28	-6.46	0.74	0.999027
1800	dm3.chr2L	13,973,822 – 13,973,924	- - - - - - - -	2478	13,973,822 – 13,973,924	-	3	102	91.28	-8.43	0.77	0.991873
1801	dm3.chr2L	13,976,629 – 13,976,737	- - - - - - - -	2479	13,976,629 – 13,976,737	-	7	112	59.82	-1.10	0.33	0.652748
1802	dm3.chr2L	13,997,786 – 13,997,879	- - - intron="intron;ID=intron_FBgn0003255:17_FBgn0003255:16;Name=rk-in;Parent=FBtr0080610;parent_type=mRNA" - - - -	2480	13,997,786 – 13,997,879	-	9	96	80.61	-1.24	0.74	0.756537
1803	dm3.chr2L	14,010,554 – 14,010,646	FBnoncoding="tRNA;ID=FBtr0080609;Name=tRNA:Q:34E-RA;Parent=FBgn0028909;Dbxref=FlyBase_Annotation_IDs:CR31838-RA;score_text=Weakly" tRNAscann="Gln_chr2L_trna28" - - "Rfam_10.0=RF00005;tRNA;ABMZ01039818.1/1-61\|8.9e-23" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|2.2e-23" "unique_Noncode_2.0=u183049_mRNAlike\|2.0e-23" -	2481	14,010,554 – 14,010,646	+	12	105	84.17	-1.60	0.89	0.951775
1803	dm3.chr2L	14,010,554 – 14,010,646		2482	14,010,554 – 14,010,646	-	12	105	84.17	-1.57	0.91	0.955972
1804	dm3.chr2L	14,013,368 – 14,013,471	- - - - - - - -	2483	14,013,368 – 14,013,471	-	5	119	74.10	-2.67	0.34	0.723880
1805	dm3.chr2L	14,017,555 – 14,017,661	- - - intron="intron;ID=intron_CG4501:4_CG4501:5;Name=bgm-in;Parent=FBtr0080590;parent_type=mRNA" - - - -	2484	14,017,555 – 14,017,661	-	6	106	69.94	-0.81	0.64	0.881846
1806	dm3.chr2L	14,045,808 – 14,045,905	- - - intron="intron;ID=intron_FBgn0028875:3_FBgn0028875:4;Name=nAcRalpha-34E-in;Parent=FBtr0080594,FBtr0300594,FBtr0301836,FBtr0304598;parent_type=mRNA" - - - -	2485	14,045,808 – 14,045,902	-	5	94	95.96	-2.75	0.91	0.984633
1806	dm3.chr2L	14,045,808 – 14,045,905		2486	14,045,809 – 14,045,905	-	7	96	82.24	-2.99	0.38	0.782204
1807	dm3.chr2L	14,058,591 – 14,058,693	- - - intron="intron;ID=intron_FBgn0028875:3_FBgn0028875:4;Name=nAcRalpha-34E-in;Parent=FBtr0080594,FBtr0300594,FBtr0301836,FBtr0304598;parent_type=mRNA" - - - -	2487	14,058,591 – 14,058,693	+	11	118	63.03	-1.19	0.36	0.668124
1808	dm3.chr2L	14,066,608 – 14,066,716	- - - intron="intron;ID=intron_FBgn0028875:5_FBgn0028875:6;Name=nAcRalpha-34E-in;Parent=FBtr0080594,FBtr0300594,FBtr0301836,FBtr0304598;parent_type=mRNA" - - - -	2488	14,066,608 – 14,066,716	+	12	111	80.19	-1.54	0.62	0.816638
1809	dm3.chr2L	14,066,744 – 14,066,841	- - - intron="intron;ID=intron_FBgn0028875:5_FBgn0028875:6;Name=nAcRalpha-34E-in;Parent=FBtr0080594,FBtr0300594,FBtr0301836,FBtr0304598;parent_type=mRNA" - - - -	2489	14,066,744 – 14,066,841	+	8	110	62.04	-0.91	0.46	0.879112
1809	dm3.chr2L	14,066,744 – 14,066,841		2490	14,066,744 – 14,066,841	-	8	110	62.04	-2.04	0.67	0.999636
1810	dm3.chr2L	14,069,181 – 14,069,238	- - - intron="intron;ID=intron_FBgn0028875:6_FBgn0028875:7;Name=nAcRalpha-34E-in;Parent=FBtr0080594,FBtr0300594,FBtr0301836,FBtr0304598;parent_type=mRNA" - - - -	2491	14,069,181 – 14,069,238	+	5	57	96.14	-3.49	0.97	0.997854
1810	dm3.chr2L	14,069,181 – 14,069,238		2492	14,069,181 – 14,069,238	-	5	57	96.14	-1.98	1.00	0.977919
1811	dm3.chr2L	14,071,317 – 14,071,463	- - - intron="intron;ID=intron_FBgn0028875:6_FBgn0028875:7;Name=nAcRalpha-34E-in;Parent=FBtr0080594,FBtr0300594,FBtr0301836,FBtr0304598;parent_type=mRNA" - - - -	2493	14,071,317 – 14,071,463	+	7	146	79.10	-1.78	0.53	0.731668
1812	dm3.chr2L	14,076,324 – 14,076,399	- - - intron="intron;ID=intron_FBgn0028875:6_FBgn0028875:7;Name=nAcRalpha-34E-in;Parent=FBtr0080594,FBtr0300594,FBtr0301836,FBtr0304598;parent_type=mRNA" - - - -	2494	14,076,324 – 14,076,399	+	9	83	72.10	-1.99	0.38	0.844335
1813	dm3.chr2L	14,090,592 – 14,090,690	- - - - - - - -	2495	14,090,592 – 14,090,690	+	11	107	75.30	-1.57	0.49	0.840586
1814	dm3.chr2L	14,094,833 – 14,094,942	- - - - - - - -	2496	14,094,833 – 14,094,942	-	5	120	76.83	-2.27	0.53	0.928038
1815	dm3.chr2L	14,097,222 – 14,097,333	- - - - - - - -	2497	14,097,222 – 14,097,333	-	12	116	64.63	-1.68	0.32	0.905353
1816	dm3.chr2L	14,106,079 – 14,106,171	- - CDS="CDS;ID=CDS_CG16879:3_752;Name=CG16879-cds;Parent=FBtr0080596;parent_type=mRNA" - - - - -	2498	14,106,079 – 14,106,171	+	12	120	77.50	-1.24	0.64	0.643045
1817	dm3.chr2L	14,125,222 – 14,125,314	- - - - - - - -	2499	14,125,222 – 14,125,314	+	5	118	54.97	-1.18	0.53	0.988860
1818	dm3.chr2L	14,128,380 – 14,128,434	- - - - - - - -	2500	14,128,380 – 14,128,434	+	4	64	62.99	-1.92	0.59	0.991638
1819	dm3.chr2L	14,135,040 – 14,135,146	- - CDS="CDS;ID=CDS_FBgn0028906:1_861;Name=CG17341-cds;Parent=FBtr0305557;parent_type=mRNA" - - - - -	2501	14,135,040 – 14,135,146	-	12	120	92.81	-1.99	0.92	0.951168
1820	dm3.chr2L	14,140,130 – 14,140,242	- - - intron="intron;ID=intron_FBgn0028906:1_FBgn0028906:2;Name=CG17341-in;Parent=FBtr0305557;parent_type=mRNA" - - - -	2502	14,140,130 – 14,140,242	-	9	112	76.88	-2.46	0.37	0.815824
1821	dm3.chr2L	14,144,792 – 14,144,904	- - - intron="intron;ID=intron_FBgn0028906:1_FBgn0028906:2;Name=CG17341-in;Parent=FBtr0305557;parent_type=mRNA" - - - -	2503	14,144,792 – 14,144,904	+	6	112	76.55	-1.10	0.64	0.619179
1822	dm3.chr2L	14,146,572 – 14,146,664	- - - intron="intron;ID=intron_FBgn0028906:1_FBgn0028906:2;Name=CG17341-in;Parent=FBtr0305557;parent_type=mRNA" - - - -	2504	14,146,572 – 14,146,664	+	3	92	97.09	-1.75	1.00	0.952695
1823	dm3.chr2L	14,148,263 – 14,148,357	- - - intron="intron;ID=intron_FBgn0028906:1_FBgn0028906:2;Name=CG17341-in;Parent=FBtr0305557;parent_type=mRNA" - - - -	2505	14,148,263 – 14,148,357	+	7	101	71.29	-2.04	0.51	0.987295
1824	dm3.chr2L	14,157,981 – 14,158,135	- - CDS="CDS;ID=CDS_FBgn0028906:4_861;Name=CG17341-cds;Parent=FBtr0305557;parent_type=mRNA" - - - - -	2506	14,157,981 – 14,158,095	+	4	114	58.28	-1.21	0.47	0.928190
				2507	14,157,981 – 14,158,095	-	4	114	58.28	-1.57	0.54	0.993102
				2508	14,158,018 – 14,158,135	-	9	117	68.10	-1.24	0.39	0.793498
1825	dm3.chr2L	14,160,905 – 14,161,008	- - - - - - - -	2509	14,160,905 – 14,161,008	+	4	114	74.40	-2.06	0.53	0.815879
1825	dm3.chr2L	14,160,905 – 14,161,008	- - - - - - - -	2510	14,160,905 – 14,161,008	-	4	114	74.40	-1.40	0.61	0.527420
1826	dm3.chr2L	14,177,380 – 14,177,486	- - - intron="intron;ID=intron_CG32972:1_CG32972:2;Name=CG32972-in;Parent=FBtr0080599,FBtr0080600;parent_type=mRNA" - - - -	2511	14,177,380 – 14,177,486	-	9	111	71.40	-1.02	0.48	0.634756
1827	dm3.chr2L	14,194,320 – 14,194,417	- - - intron="intron;ID=intron_CG4551:8_CG4551:9;Name=smi35A-in;Parent=FBtr0089290,FBtr0089289,FBtr0089288,FBtr0100447,FBtr0100448;parent_type=mRNA" - - - -	2512	14,194,320 – 14,194,417	+	9	98	74.55	-1.21	0.48	0.545269
1828	dm3.chr2L	14,196,421 – 14,196,511	- - - intron="intron;ID=intron_CG4551:6_CG4551:7;Name=smi35A-in;Parent=FBtr0089290,FBtr0089289,FBtr0089288,FBtr0100447,FBtr0100448;parent_type=mRNA" - - - -	2513	14,196,421 – 14,196,511	+	8	96	76.92	-1.25	0.57	0.607643
1829	dm3.chr2L	14,206,002 – 14,206,140	- - - intron="intron;ID=intron_CG4551:4_CG4551:5;Name=smi35A-in;Parent=FBtr0089290,FBtr0089289,FBtr0089288,FBtr0100447,FBtr0100448;parent_type=mRNA" - - - -	2514	14,206,002 – 14,206,108	+	9	110	63.09	-1.04	0.41	0.895105
1829	dm3.chr2L	14,206,002 – 14,206,140		2515	14,206,037 – 14,206,140	+	9	113	63.34	-0.50	0.46	0.635792
1830	dm3.chr2L	14,216,000 – 14,216,109	- - - intron="intron;ID=intron_CG4551:4_CG4551:5;Name=smi35A-in;Parent=FBtr0089290,FBtr0089289,FBtr0089288,FBtr0100447,FBtr0100448;parent_type=mRNA" - - - -	2516	14,216,000 – 14,216,109	+	6	111	82.76	-1.82	0.61	0.533382
1831	dm3.chr2L	14,220,323 – 14,220,499	- - - intron="intron;ID=intron_CG4551:3_CG4551:4;Name=smi35A-in;Parent=FBtr0089290,FBtr0089289,FBtr0089288,FBtr0100447,FBtr0100448;parent_type=mRNA" - - - -	2517	14,220,323 – 14,220,419	-	6	118	73.41	-1.39	0.50	0.570293
				2518	14,220,352 – 14,220,446	-	6	115	77.18	-2.12	0.56	0.935947
				2519	14,220,446 – 14,220,499	-	5	54	81.94	-2.30	0.51	0.679241
1832	dm3.chr2L	14,230,537 – 14,230,648	- - - intron="intron;ID=intron_CG4551:12_CG4551:13;Name=smi35A-in;Parent=FBtr0089289;parent_type=mRNA" - - - -	2520	14,230,537 – 14,230,648	+	7	113	58.40	-1.15	0.41	0.953335
1833	dm3.chr2L	14,235,996 – 14,236,112	- - - - - - - -	2521	14,235,996 – 14,236,112	+	7	117	84.53	-2.98	0.62	0.986209
1834	dm3.chr2L	14,243,274 – 14,243,405	- - - - - - - -	2522	14,243,274 – 14,243,375	+	6	105	87.35	-3.08	0.71	0.988852
				2523	14,243,314 – 14,243,405	+	6	100	79.76	-2.80	0.70	0.994521
				2524	14,243,314 – 14,243,405	-	6	100	79.76	-1.75	0.70	0.873403
1835	dm3.chr2L	14,244,248 – 14,244,357	- - - - - - - -	2525	14,244,248 – 14,244,357	+	11	117	69.19	-0.74	0.53	0.545908
1836	dm3.chr2L	14,269,122 – 14,269,214	- - - intron="intron;ID=intron_FBgn0261563:1_FBgn0261563:2;Name=wb-in;Parent=FBtr0302731,FBtr0305063;parent_type=mRNA" - - - -	2526	14,269,122 – 14,269,214	+	6	95	90.61	-1.81	0.80	0.704559
1837	dm3.chr2L	14,270,917 – 14,271,024	- - - intron="intron;ID=intron_FBgn0261563:1_FBgn0261563:2;Name=wb-in;Parent=FBtr0302731,FBtr0305063;parent_type=mRNA" - - - -	2527	14,270,917 – 14,271,024	+	8	115	74.33	-1.07	0.54	0.614739
1837	dm3.chr2L	14,270,917 – 14,271,024		2528	14,270,917 – 14,271,024	-	8	115	74.33	-1.74	0.60	0.977234
1838	dm3.chr2L	14,271,254 – 14,271,346	- - - intron="intron;ID=intron_FBgn0261563:1_FBgn0261563:2;Name=wb-in;Parent=FBtr0302731,FBtr0305063;parent_type=mRNA" - - - -	2529	14,271,254 – 14,271,346	-	9	103	76.28	-1.64	0.49	0.599722
1839	dm3.chr2L	14,273,162 – 14,273,256	- - - intron="intron;ID=intron_FBgn0261563:1_FBgn0261563:2;Name=wb-in;Parent=FBtr0302731,FBtr0305063;parent_type=mRNA" - - - -	2530	14,273,162 – 14,273,256	+	4	94	76.52	-1.34	0.75	0.814165
1840	dm3.chr2L	14,316,301 – 14,316,361	- - - intron="intron;ID=intron_FBgn0261563:9_FBgn0261563:11;Name=wb-in;Parent=FBtr0302732,FBtr0302733;parent_type=mRNA" - - - -	2531	14,316,301 – 14,316,361	+	6	60	86.12	-1.14	0.92	0.763938
1841	dm3.chr2L	14,369,723 – 14,369,846	- - - - - - - -	2532	14,369,723 – 14,369,824	-	5	101	86.09	-1.77	0.93	0.959633
				2533	14,369,753 – 14,369,846	+	5	93	89.12	-2.62	0.73	0.929744
				2534	14,369,753 – 14,369,846	-	5	93	89.12	-2.05	0.71	0.571519
1842	dm3.chr2L	14,375,091 – 14,375,181	- - - - - - - -	2535	14,375,091 – 14,375,181	+	8	96	84.43	-2.05	0.71	0.913154
1843	dm3.chr2L	14,385,644 – 14,385,747	- - - - - - - -	2536	14,385,644 – 14,385,747	-	6	106	84.71	-2.53	0.53	0.773442
1844	dm3.chr2L	14,388,800 – 14,388,895	- - - - - - - -	2537	14,388,800 – 14,388,895	-	11	117	80.20	-2.20	0.50	0.754617
1845	dm3.chr2L	14,393,652 – 14,393,787	- - - intron="intron;ID=intron_FBgn0004858:3_FBgn0004858:2;Name=elB-in;Parent=FBtr0080637;parent_type=mRNA" - - - -	2538	14,393,652 – 14,393,759	+	7	112	78.35	-1.72	0.57	0.811379
1845	dm3.chr2L	14,393,652 – 14,393,787		2539	14,393,682 – 14,393,787	+	8	117	67.33	-1.22	0.51	0.917403
1846	dm3.chr2L	14,398,065 – 14,398,170	- - - intron="intron;ID=intron_FBgn0004858:3_FBgn0004858:2;Name=elB-in;Parent=FBtr0080637;parent_type=mRNA" - - - -	2540	14,398,065 – 14,398,170	+	11	115	80.77	-1.74	0.60	0.744398
1846	dm3.chr2L	14,398,065 – 14,398,170		2541	14,398,065 – 14,398,170	-	11	115	80.77	-1.40	0.63	0.542586
1847	dm3.chr2L	14,399,770 – 14,399,860	- - - intron="intron;ID=intron_FBgn0004858:3_FBgn0004858:2;Name=elB-in;Parent=FBtr0080637;parent_type=mRNA" - - - -	2542	14,399,770 – 14,399,860	-	4	90	89.26	-2.29	0.88	0.969241
1848	dm3.chr2L	14,400,452 – 14,400,543	- - - intron="intron;ID=intron_FBgn0004858:3_FBgn0004858:2;Name=elB-in;Parent=FBtr0080637;parent_type=mRNA" - - - -	2543	14,400,452 – 14,400,543	+	12	108	76.27	-2.26	0.57	0.991738
1849	dm3.chr2L	14,400,696 – 14,400,752	- - - intron="intron;ID=intron_FBgn0004858:3_FBgn0004858:2;Name=elB-in;Parent=FBtr0080637;parent_type=mRNA" - - - -	2544	14,400,696 – 14,400,752	+	5	57	85.46	-1.38	0.79	0.521537
1850	dm3.chr2L	14,408,176 – 14,408,270	- - - intron="intron;ID=intron_FBgn0004858:3_FBgn0004858:2;Name=elB-in;Parent=FBtr0080637;parent_type=mRNA" - - - -	2545	14,408,176 – 14,408,270	-	6	96	69.31	-1.08	0.48	0.646172
1851	dm3.chr2L	14,409,762 – 14,409,857	- - - - - - - -	2546	14,409,762 – 14,409,857	-	8	99	70.50	-0.82	0.53	0.708459
1852	dm3.chr2L	14,411,554 – 14,411,654	- - - - - - - -	2547	14,411,554 – 14,411,654	-	10	114	68.57	-2.09	0.38	0.973621
1853	dm3.chr2L	14,412,520 – 14,412,610	- - - - - - - -	2548	14,412,520 – 14,412,610	+	12	116	74.40	-1.08	0.57	0.652749
1854	dm3.chr2L	14,413,220 – 14,413,355	- - - - - - - -	2549	14,413,220 – 14,413,333	+	11	121	71.31	-0.80	0.60	0.817093
				2550	14,413,220 – 14,413,333	-	11	121	71.31	-0.79	0.57	0.739908
				2551	14,413,260 – 14,413,355	+	9	103	65.95	-0.97	0.40	0.586122
1855	dm3.chr2L	14,420,737 – 14,420,827	- - - - - - - -	2552	14,420,737 – 14,420,827	-	6	94	87.58	-2.27	0.86	0.976906
1856	dm3.chr2L	14,422,263 – 14,422,362	- - - - - - - -	2553	14,422,263 – 14,422,362	-	7	102	75.74	-1.65	0.49	0.550256
1857	dm3.chr2L	14,425,904 – 14,426,057	- - - - - - - -	2554	14,425,904 – 14,425,997	-	10	110	62.99	-1.74	0.33	0.880286
				2555	14,425,934 – 14,426,036	-	5	103	85.77	-1.80	0.89	0.940026
				2556	14,425,964 – 14,426,056	-	7	95	63.90	-1.89	0.45	0.991497
				2557	14,425,965 – 14,426,057	-	7	95	67.77	-1.71	0.40	0.876927
1858	dm3.chr2L	14,427,669 – 14,427,725	- - - - - - - -	2558	14,427,669 – 14,427,725	+	4	56	95.54	-1.58	0.87	0.506308
1859	dm3.chr2L	14,431,496 – 14,431,673	- - - - - - - -	2559	14,431,496 – 14,431,598	-	9	117	72.19	-2.00	0.33	0.596242
				2560	14,431,562 – 14,431,673	+	9	116	79.77	-2.44	0.61	0.986233
				2561	14,431,562 – 14,431,673	-	9	116	79.77	-2.13	0.59	0.951860
1860	dm3.chr2L	14,437,492 – 14,437,594	- - - - - - - -	2562	14,437,492 – 14,437,594	-	5	102	86.74	-2.06	0.71	0.721410
1861	dm3.chr2L	14,437,865 – 14,437,963	- - - - - - - -	2563	14,437,865 – 14,437,963	-	8	107	84.47	-1.74	0.66	0.524213
1862	dm3.chr2L	14,438,982 – 14,439,075	- - - - - - - -	2564	14,438,982 – 14,439,075	+	6	98	84.86	-1.43	0.83	0.805003
1862	dm3.chr2L	14,438,982 – 14,439,075	- - - - - - - -	2565	14,438,982 – 14,439,075	-	6	98	84.86	-1.63	0.70	0.592803
1863	dm3.chr2L	14,450,210 – 14,450,301	- - - - - - - -	2566	14,450,210 – 14,450,301	-	9	95	71.91	-2.30	0.30	0.602088
1864	dm3.chr2L	14,455,145 – 14,455,208	- - - - - - - -	2567	14,455,145 – 14,455,208	+	5	63	91.90	-2.27	0.75	0.758321
1865	dm3.chr2L	14,456,974 – 14,457,076	- - - - - - - -	2568	14,456,974 – 14,457,076	+	12	110	83.99	-2.58	0.61	0.966520
1865	dm3.chr2L	14,456,974 – 14,457,076	- - - - - - - -	2569	14,456,974 – 14,457,076	-	12	110	83.99	-2.28	0.53	0.773831
1866	dm3.chr2L	14,457,785 – 14,457,895	- - - - - - - -	2570	14,457,785 – 14,457,880	+	12	112	89.21	-2.46	0.84	0.977896
				2571	14,457,785 – 14,457,880	-	12	112	89.21	-1.86	0.89	0.939119
				2572	14,457,801 – 14,457,895	+	11	120	84.20	-1.68	0.79	0.855299
1867	dm3.chr2L	14,469,617 – 14,469,759	- - - - - - - -	2573	14,469,617 – 14,469,723	-	7	107	84.13	-1.22	0.79	0.633200
1867	dm3.chr2L	14,469,617 – 14,469,759	- - - - - - - -	2574	14,469,645 – 14,469,759	-	12	120	86.20	-2.17	0.63	0.813035
1868	dm3.chr2L	14,472,799 – 14,472,929	- - - - - - - -	2575	14,472,799 – 14,472,929	+	10	160	67.52	-1.21	0.46	0.688134
1869	dm3.chr2L	14,488,105 – 14,488,197	- - - - - - - -	2576	14,488,105 – 14,488,197	+	11	116	68.72	-0.63	0.53	0.547746
1870	dm3.chr2L	14,502,404 – 14,502,500	- - - - - - - -	2577	14,502,404 – 14,502,500	+	12	110	73.32	-1.15	0.53	0.796470
1871	dm3.chr2L	14,502,546 – 14,502,611	- - - - - - - -	2578	14,502,546 – 14,502,611	+	12	73	85.56	-5.09	0.72	0.999674
1871	dm3.chr2L	14,502,546 – 14,502,611	- - - - - - - -	2579	14,502,546 – 14,502,611	-	12	73	85.56	-4.92	0.74	0.999637
1872	dm3.chr2L	14,505,467 – 14,505,558	- - - - - - - -	2580	14,505,467 – 14,505,558	-	10	110	74.60	-1.86	0.44	0.752822
1873	dm3.chr2L	14,507,132 – 14,507,237	- - - - - - - -	2581	14,507,132 – 14,507,234	+	12	120	85.83	-1.91	0.68	0.726477
1873	dm3.chr2L	14,507,132 – 14,507,237	- - - - - - - -	2582	14,507,138 – 14,507,237	+	12	117	84.01	-1.93	0.66	0.811691
1874	dm3.chr2L	14,511,076 – 14,511,169	- - - - - - - -	2583	14,511,076 – 14,511,169	+	9	106	87.89	-1.39	0.88	0.785979
1875	dm3.chr2L	14,515,993 – 14,516,091	- - - - - - - -	2584	14,515,993 – 14,516,091	+	12	113	80.60	-2.17	0.43	0.641888
1876	dm3.chr2L	14,518,087 – 14,518,159	FBnoncoding="tRNA;ID=FBtr0089613;Name=tRNA:G3:35Ba-RA;Parent=FBgn0011862;Dbxref=FlyBase_Annotation_IDs:CR31977-RA;score_text=Weakly" tRNAscann="Gly_chr2L_trna19" - - "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|7.3e-32" "Noncode_2.0=n122145_u121243_DQ595536_piRNA_human\|8.4e-07" "unique_Noncode_2.0=u121243_piRNA_human\|7.3e-07" -	2585	14,518,087 – 14,518,159	+	13	78	84.19	-1.22	0.88	0.868769
1876	dm3.chr2L	14,518,087 – 14,518,159		2586	14,518,087 – 14,518,159	-	13	78	84.19	-1.51	0.82	0.901079
1877	dm3.chr2L	14,518,608 – 14,518,696	FBnoncoding="tRNA;ID=FBtr0080665;Name=tRNA:G3:35Bc-RA;Parent=FBgn0011864;Dbxref=FlyBase_Annotation_IDs:CR31982-RA;score_text=Weakly" tRNAscann="Gly_chr2L_trna26" - - "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|9.4e-32" - "unique_Noncode_2.0=u121243_piRNA_human\|9.5e-07" -	2587	14,518,608 – 14,518,696	+	15	94	75.49	-1.37	0.81	0.987620
1877	dm3.chr2L	14,518,608 – 14,518,696		2588	14,518,608 – 14,518,696	-	15	94	75.49	-1.59	0.90	0.991924
1878	dm3.chr2L	14,522,767 – 14,522,857	- - - - - - - -	2589	14,522,767 – 14,522,857	+	5	103	74.31	-2.99	0.66	0.998335
1879	dm3.chr2L	14,529,030 – 14,529,122	- - - - - - - -	2590	14,529,030 – 14,529,122	-	8	100	86.48	-1.71	0.76	0.747381
1880	dm3.chr2L	14,529,544 – 14,529,654	- - - - - - - -	2591	14,529,544 – 14,529,654	-	10	112	75.19	-0.88	0.67	0.680894
1881	dm3.chr2L	14,529,837 – 14,529,947	- - - - - - - -	2592	14,529,837 – 14,529,934	+	12	120	89.59	-3.25	0.89	0.997178
				2593	14,529,837 – 14,529,934	-	12	120	89.59	-2.42	0.89	0.984122
				2594	14,529,856 – 14,529,947	+	10	118	82.50	-3.33	0.92	0.998616
				2595	14,529,856 – 14,529,947	-	10	118	82.50	-2.18	0.91	0.989942
1882	dm3.chr2L	14,530,526 – 14,530,617	FBnoncoding="tRNA;ID=FBtr0080664;Name=tRNA:G3:35Bd-RA;Parent=FBgn0011865;Dbxref=FlyBase_Annotation_IDs:CR31981-RA;score_text=Weakly" tRNAscann="Gly_chr2L_trna25" - - "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|9.8e-32" - "unique_Noncode_2.0=u121243_piRNA_human\|9.9e-07" -	2596	14,530,526 – 14,530,617	+	14	105	79.06	-2.03	0.92	0.994108
1882	dm3.chr2L	14,530,526 – 14,530,617		2597	14,530,526 – 14,530,617	-	14	105	79.06	-1.70	0.95	0.988161
1883	dm3.chr2L	14,531,279 – 14,531,440	- - - - - - - -	2598	14,531,279 – 14,531,369	-	4	93	91.26	-2.15	0.83	0.877012
1883	dm3.chr2L	14,531,279 – 14,531,440	- - - - - - - -	2599	14,531,347 – 14,531,440	-	7	100	71.68	-1.11	0.48	0.572834
1884	dm3.chr2L	14,532,168 – 14,532,235	- - - - - - - -	2600	14,532,168 – 14,532,235	+	8	80	75.28	-2.11	0.43	0.734283
1884	dm3.chr2L	14,532,168 – 14,532,235	- - - - - - - -	2601	14,532,168 – 14,532,235	-	8	80	75.28	-1.55	0.51	0.555992
1885	dm3.chr2L	14,540,814 – 14,540,904	- - - - - - - -	2602	14,540,814 – 14,540,904	+	11	114	80.57	-1.81	0.66	0.880228
1886	dm3.chr2L	14,541,129 – 14,541,234	- - - - - - - -	2603	14,541,129 – 14,541,234	+	6	106	65.97	-1.00	0.48	0.873378
1887	dm3.chr2L	14,544,228 – 14,544,320	- - - - - - - -	2604	14,544,228 – 14,544,320	-	7	99	68.52	-1.66	0.41	0.794813
1888	dm3.chr2L	14,552,971 – 14,553,064	- - - - - - - -	2605	14,552,971 – 14,553,064	+	10	114	63.65	-0.97	0.50	0.900591
1889	dm3.chr2L	14,554,448 – 14,554,538	- - - - - - - -	2606	14,554,448 – 14,554,538	-	11	114	77.12	-0.34	0.92	0.626097
1890	dm3.chr2L	14,559,361 – 14,559,417	- - - - - - - -	2607	14,559,361 – 14,559,417	-	11	58	88.07	-2.10	0.63	0.723590
1891	dm3.chr2L	14,568,624 – 14,568,719	- - - - - - - -	2608	14,568,624 – 14,568,719	-	10	119	74.93	-1.07	0.59	0.557448
1892	dm3.chr2L	14,578,497 – 14,578,582	- - - - - - - -	2609	14,578,497 – 14,578,582	-	6	85	84.31	-1.34	0.79	0.678681
1893	dm3.chr2L	14,581,886 – 14,581,981	- - - - - - - -	2610	14,581,886 – 14,581,981	+	7	109	66.55	-2.25	0.35	0.958942
1894	dm3.chr2L	14,586,745 – 14,586,796	- - - - - - - -	2611	14,586,745 – 14,586,796	+	9	56	86.56	-1.58	0.75	0.615195
1894	dm3.chr2L	14,586,745 – 14,586,796	- - - - - - - -	2612	14,586,745 – 14,586,796	-	9	56	86.56	-1.28	0.86	0.731252
1895	dm3.chr2L	14,587,778 – 14,587,890	- - - - - - - -	2613	14,587,778 – 14,587,890	-	3	112	82.57	-2.13	0.71	0.805770
1896	dm3.chr2L	14,592,789 – 14,592,893	- - - - - - - -	2614	14,592,789 – 14,592,893	-	7	108	73.16	-0.65	0.62	0.526011
1897	dm3.chr2L	14,597,448 – 14,597,562	- - - - - - - -	2615	14,597,448 – 14,597,562	+	5	114	75.93	-1.53	0.59	0.749741
1898	dm3.chr2L	14,598,834 – 14,598,944	FBnoncoding="tRNA;ID=FBtr0080646;Name=tRNA:P:35Ba-RA;Parent=FBgn0028912;Dbxref=FlyBase_Annotation_IDs:CR31983-RA;score_text=Weakly" tRNAscann="Pro_chr2L_trna20" - - "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|1.8e-24" - - -	2616	14,598,834 – 14,598,944	+	11	114	79.05	-0.57	0.84	0.730508
1898	dm3.chr2L	14,598,834 – 14,598,944		2617	14,598,834 – 14,598,944	-	11	114	79.05	-1.61	0.74	0.976371
1899	dm3.chr2L	14,601,149 – 14,601,256	- - CDS="CDS;ID=CDS_FBgn0003016:2_698;Name=osp-cds;Parent=FBtr0301496;parent_type=mRNA" - - - - -	2618	14,601,149 – 14,601,256	+	12	107	71.51	-2.23	0.29	0.848913
1900	dm3.chr2L	14,602,790 – 14,602,904	- - CDS="CDS;ID=CDS_FBgn0003016:7_699;Name=osp-cds;Parent=FBtr0114465;parent_type=mRNA" - - - - -	2619	14,602,790 – 14,602,904	+	11	115	73.68	-1.62	0.39	0.723898
1901	dm3.chr2L	14,606,341 – 14,606,397	- - - intron="intron;ID=intron_FBgn0003016:8_FBgn0003016:7;Name=osp-in;Parent=FBtr0114465,FBtr0301494,FBtr0301495,FBtr0301496;parent_type=mRNA" - - - -	2620	14,606,341 – 14,606,397	-	4	56	89.88	-0.71	0.98	0.564702
1902	dm3.chr2L	14,606,468 – 14,606,562	- - - intron="intron;ID=intron_FBgn0003016:8_FBgn0003016:7;Name=osp-in;Parent=FBtr0114465,FBtr0301494,FBtr0301495,FBtr0301496;parent_type=mRNA" - - - -	2621	14,606,468 – 14,606,562	-	6	100	76.25	-1.63	0.51	0.636343
1903	dm3.chr2L	14,613,070 – 14,613,180	- - - intron="intron;ID=intron_FBgn0003016:10_FBgn0003016:9;Name=osp-in;Parent=FBtr0114465,FBtr0301494,FBtr0301495,FBtr0301496;parent_type=mRNA" - - - -	2622	14,613,070 – 14,613,180	-	6	111	78.14	-1.31	0.58	0.500000
1904	dm3.chr2L	14,621,410 – 14,621,518	- - - - - - - -	2623	14,621,410 – 14,621,518	+	5	108	93.89	-2.41	0.80	0.868671
1904	dm3.chr2L	14,621,410 – 14,621,518	- - - - - - - -	2624	14,621,410 – 14,621,518	-	5	108	93.89	-2.28	0.83	0.877699
1905	dm3.chr2L	14,627,421 – 14,627,501	- - - - - - - -	2625	14,627,421 – 14,627,501	-	9	86	85.94	-2.84	0.55	0.939929
1906	dm3.chr2L	14,638,439 – 14,638,554	- - - intron="intron;ID=intron_FBgn0003016:11_FBgn0003016:10;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2626	14,638,439 – 14,638,554	+	8	119	74.95	-1.22	0.64	0.884044
1906	dm3.chr2L	14,638,439 – 14,638,554		2627	14,638,439 – 14,638,554	-	8	119	74.95	-1.12	0.54	0.567738
1907	dm3.chr2L	14,639,002 – 14,639,118	- - - intron="intron;ID=intron_FBgn0003016:11_FBgn0003016:10;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2628	14,639,002 – 14,639,118	-	8	120	77.65	-1.57	0.62	0.814690
1908	dm3.chr2L	14,651,237 – 14,651,302	- - - intron="intron;ID=intron_FBgn0003016:12_FBgn0003016:11;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2629	14,651,237 – 14,651,302	+	3	65	56.92	-0.97	0.77	0.977928
1908	dm3.chr2L	14,651,237 – 14,651,302		2630	14,651,237 – 14,651,302	-	3	65	56.92	-1.26	0.55	0.951300
1909	dm3.chr2L	14,656,709 – 14,656,817	- - - intron="intron;ID=intron_FBgn0003016:12_FBgn0003016:11;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2631	14,656,709 – 14,656,817	+	6	109	89.28	-2.39	0.64	0.699312
1910	dm3.chr2L	14,659,244 – 14,659,337	- - - intron="intron;ID=intron_FBgn0003016:12_FBgn0003016:11;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2632	14,659,244 – 14,659,337	+	9	116	77.75	-2.58	0.55	0.979832
1911	dm3.chr2L	14,663,386 – 14,663,452	- - - intron="intron;ID=intron_FBgn0003016:12_FBgn0003016:11;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2633	14,663,386 – 14,663,452	+	11	84	63.29	-1.52	0.55	0.991823
1911	dm3.chr2L	14,663,386 – 14,663,452		2634	14,663,386 – 14,663,452	-	11	84	63.29	-2.59	0.46	0.999066
1912	dm3.chr2L	14,665,248 – 14,665,341	- - - intron="intron;ID=intron_FBgn0003016:12_FBgn0003016:11;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2635	14,665,248 – 14,665,341	-	9	117	77.39	-2.46	0.68	0.993161
1913	dm3.chr2L	14,665,351 – 14,665,462	- - - intron="intron;ID=intron_FBgn0003016:12_FBgn0003016:11;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2636	14,665,351 – 14,665,459	+	5	109	82.24	-2.54	0.58	0.863826
				2637	14,665,351 – 14,665,459	-	5	109	82.24	-2.57	0.53	0.775216
				2638	14,665,351 – 14,665,462	+	5	112	82.75	-2.87	0.60	0.956948
				2639	14,665,351 – 14,665,462	-	5	112	82.75	-2.79	0.56	0.912607
1914	dm3.chr2L	14,666,126 – 14,666,229	- - - intron="intron;ID=intron_FBgn0003016:12_FBgn0003016:11;Name=osp-in;Parent=FBtr0114465,FBtr0301496;parent_type=mRNA" - - - -	2640	14,666,126 – 14,666,229	+	8	112	66.10	-1.93	0.41	0.983593
1915	dm3.chr2L	14,714,915 – 14,715,013	- - - - - - - -	2641	14,714,915 – 14,715,013	+	12	116	79.46	-1.29	0.65	0.612477
1916	dm3.chr2L	14,721,422 – 14,721,534	- - - - - - - -	2642	14,721,422 – 14,721,534	-	8	118	79.53	-1.58	0.60	0.611771
1917	dm3.chr2L	14,733,247 – 14,733,361	- - - - - - - -	2643	14,733,247 – 14,733,361	+	6	114	65.32	-0.57	0.54	0.683304
1917	dm3.chr2L	14,733,247 – 14,733,361	- - - - - - - -	2644	14,733,247 – 14,733,361	-	6	114	65.32	-0.34	0.59	0.649220
1918	dm3.chr2L	14,751,444 – 14,751,620	- - - - - - - -	2645	14,751,444 – 14,751,546	+	11	119	85.45	-2.46	0.70	0.966384
				2646	14,751,467 – 14,751,586	+	12	120	92.34	-2.19	0.97	0.985451
				2647	14,751,500 – 14,751,620	+	12	120	91.40	-2.23	0.77	0.820385
1919	dm3.chr2L	14,754,250 – 14,754,345	- - - - - - - -	2648	14,754,250 – 14,754,345	+	9	107	82.55	-1.89	0.72	0.900210
1920	dm3.chr2L	14,767,528 – 14,767,631	- - - - - - - -	2649	14,767,528 – 14,767,631	+	7	107	74.46	-1.63	0.47	0.709931
1920	dm3.chr2L	14,767,528 – 14,767,631	- - - - - - - -	2650	14,767,528 – 14,767,631	-	7	107	74.46	-2.14	0.43	0.893220
1921	dm3.chr2L	14,768,615 – 14,768,682	- - - - - - - -	2651	14,768,615 – 14,768,682	+	6	67	65.60	-1.47	0.37	0.786841
1922	dm3.chr2L	14,783,057 – 14,783,109	- - - - - - - -	2652	14,783,057 – 14,783,109	+	7	60	67.63	-3.11	0.35	0.992941
1922	dm3.chr2L	14,783,057 – 14,783,109	- - - - - - - -	2653	14,783,057 – 14,783,109	-	7	60	67.63	-2.69	0.47	0.996663
1923	dm3.chr2L	14,783,348 – 14,783,469	- - CDS="CDS;ID=CDS_CG18636:4_754;Name=CG18636-cds;Parent=FBtr0080688;parent_type=mRNA" - - - - -	2654	14,783,348 – 14,783,469	+	3	121	90.11	-1.54	0.86	0.596690
1923	dm3.chr2L	14,783,348 – 14,783,469		2655	14,783,348 – 14,783,469	-	3	121	90.11	-2.18	0.92	0.967769
1924	dm3.chr2L	14,786,790 – 14,786,884	- - - - - - - -	2656	14,786,790 – 14,786,884	+	6	112	70.44	-1.42	0.41	0.500000
1925	dm3.chr2L	14,789,864 – 14,789,921	- - - - - - - -	2657	14,789,864 – 14,789,921	+	10	62	77.69	-1.56	0.62	0.921317
1925	dm3.chr2L	14,789,864 – 14,789,921	- - - - - - - -	2658	14,789,864 – 14,789,921	-	10	62	77.69	-1.82	0.61	0.962048
1926	dm3.chr2L	14,792,346 – 14,792,497	- - - - - - - -	2659	14,792,346 – 14,792,497	-	9	155	71.04	-1.95	0.29	0.564977
1927	dm3.chr2L	14,800,931 – 14,801,026	- - - - - - - -	2660	14,800,931 – 14,801,026	-	11	117	82.59	-1.46	0.69	0.563670
1928	dm3.chr2L	14,810,584 – 14,810,642	- - - - - - - -	2661	14,810,584 – 14,810,642	-	5	58	95.52	-1.20	0.95	0.634863
1929	dm3.chr2L	14,832,186 – 14,832,240	- - - - - - - -	2662	14,832,186 – 14,832,240	+	5	54	92.59	-1.09	0.95	0.653949
1930	dm3.chr2L	14,840,584 – 14,840,684	- - - - - - - -	2663	14,840,584 – 14,840,684	+	9	103	71.08	-1.50	0.50	0.937470
1930	dm3.chr2L	14,840,584 – 14,840,684	- - - - - - - -	2664	14,840,584 – 14,840,684	-	9	103	71.08	-2.70	0.59	0.999461
1931	dm3.chr2L	14,860,872 – 14,860,980	- - - - - - - -	2665	14,860,872 – 14,860,980	+	8	120	82.86	-1.85	0.63	0.690639
1932	dm3.chr2L	14,867,022 – 14,867,116	- - - - - - - -	2666	14,867,022 – 14,867,116	-	6	98	72.38	-1.24	0.53	0.714925
1933	dm3.chr2L	14,872,919 – 14,873,024	- - - - - - - -	2667	14,872,919 – 14,873,024	-	11	116	55.53	-0.45	0.50	0.933287
1934	dm3.chr2L	14,874,764 – 14,874,889	- - - - - - - -	2668	14,874,764 – 14,874,889	-	8	133	72.78	-0.89	0.57	0.522657
1935	dm3.chr2L	14,877,807 – 14,877,900	- - - - - - - -	2669	14,877,807 – 14,877,900	+	11	117	70.79	-2.36	0.38	0.950723
1935	dm3.chr2L	14,877,807 – 14,877,900	- - - - - - - -	2670	14,877,807 – 14,877,900	-	11	117	70.79	-2.07	0.52	0.987712
1936	dm3.chr2L	14,894,426 – 14,894,546	- - - - - - - -	2671	14,894,426 – 14,894,546	-	12	128	90.34	-1.63	0.91	0.913630
1937	dm3.chr2L	14,901,619 – 14,901,760	- - - - - - - -	2672	14,901,619 – 14,901,732	+	10	117	71.13	-1.21	0.64	0.980982
1937	dm3.chr2L	14,901,619 – 14,901,760	- - - - - - - -	2673	14,901,657 – 14,901,760	+	10	108	83.17	-2.00	0.64	0.883577
1938	dm3.chr2L	14,904,347 – 14,904,448	- - - - - - - -	2674	14,904,347 – 14,904,448	-	10	116	65.47	-1.64	0.35	0.816631
1939	dm3.chr2L	14,911,430 – 14,911,550	- - - intron="intron;ID=intron_FBgn0259213:2_FBgn0259213:1;Name=CG42313-in;Parent=FBtr0299711;parent_type=mRNA" - - - -	2675	14,911,430 – 14,911,550	+	7	132	73.97	-1.45	0.53	0.775096
1939	dm3.chr2L	14,911,430 – 14,911,550		2676	14,911,430 – 14,911,550	-	7	132	73.97	-2.09	0.45	0.910802
1940	dm3.chr2L	14,912,042 – 14,912,182	- - CDS="CDS;ID=CDS_FBgn0259213:2_701;Name=CG42313-cds;Parent=FBtr0299711;parent_type=mRNA" - - - - -	2677	14,912,042 – 14,912,145	+	7	107	72.46	-1.46	0.49	0.851486
1940	dm3.chr2L	14,912,042 – 14,912,182		2678	14,912,079 – 14,912,182	+	7	112	83.02	-1.66	0.73	0.816017
1941	dm3.chr2L	14,922,325 – 14,922,395	- - - intron="intron;ID=intron_FBgn0259213:11_FBgn0259213:10;Name=CG42313-in;Parent=FBtr0299711;parent_type=mRNA" - - - -	2679	14,922,325 – 14,922,395	+	6	71	88.63	-1.89	0.77	0.775755
1942	dm3.chr2L	14,930,415 – 14,930,475	- - - - - - - -	2680	14,930,415 – 14,930,475	+	5	60	98.67	-1.72	1.00	0.942842
1942	dm3.chr2L	14,930,415 – 14,930,475	- - - - - - - -	2681	14,930,415 – 14,930,475	-	5	60	98.67	-1.51	1.00	0.906088
1943	dm3.chr2L	14,958,886 – 14,958,984	- - - intron="intron;ID=intron_FBgn0259213:19_FBgn0259213:18;Name=CG42313-in;Parent=FBtr0299711;parent_type=mRNA" - - - -	2682	14,958,886 – 14,958,984	+	5	98	97.96	-1.27	0.95	0.610746
1943	dm3.chr2L	14,958,886 – 14,958,984		2683	14,958,886 – 14,958,984	-	5	98	97.96	-2.48	0.96	0.982742
1944	dm3.chr2L	14,962,447 – 14,962,540	- - - intron="intron;ID=intron_FBgn0259213:19_FBgn0259213:18;Name=CG42313-in;Parent=FBtr0299711;parent_type=mRNA" - - - -	2684	14,962,447 – 14,962,540	+	10	106	67.44	-0.93	0.44	0.661106
1945	dm3.chr2L	14,963,025 – 14,963,118	- - - - - - - -	2685	14,963,025 – 14,963,118	-	11	103	76.95	-1.11	0.54	0.525993
1946	dm3.chr2L	14,997,615 – 14,997,721	- - - - - - - -	2686	14,997,615 – 14,997,721	+	9	114	64.12	-0.34	0.50	0.603683
1947	dm3.chr2L	15,025,450 – 15,025,560	- - - - - - - -	2687	15,025,450 – 15,025,554	-	14	117	73.66	-1.01	0.49	0.575921
1947	dm3.chr2L	15,025,450 – 15,025,560	- - - - - - - -	2688	15,025,456 – 15,025,560	-	14	114	68.92	-0.90	0.52	0.906234
1948	dm3.chr2L	15,030,707 – 15,030,833	- - - - - - - -	2689	15,030,707 – 15,030,833	-	14	144	69.61	-2.37	0.52	0.998819
1949	dm3.chr2L	15,035,405 – 15,035,505	- - - - - - - -	2690	15,035,405 – 15,035,505	-	12	109	64.18	-1.52	0.32	0.809198
1950	dm3.chr2L	15,039,296 – 15,039,402	- - - - - - - -	2691	15,039,296 – 15,039,402	+	7	106	56.55	-0.53	0.39	0.589217
1950	dm3.chr2L	15,039,296 – 15,039,402	- - - - - - - -	2692	15,039,296 – 15,039,402	-	7	106	56.55	-1.04	0.31	0.627500
1951	dm3.chr2L	15,044,319 – 15,044,416	- - - - - - - -	2693	15,044,319 – 15,044,416	+	12	112	73.96	-1.50	0.48	0.680462
1952	dm3.chr2L	15,057,998 – 15,058,049	- - - - - - - -	2694	15,057,998 – 15,058,049	+	3	53	60.38	-2.81	0.26	0.902767
1953	dm3.chr2L	15,064,058 – 15,064,153	- - - intron="intron;ID=intron_FBgn0262526:1_FBgn0262526:2;Name=vas-in;Parent=FBtr0304854,FBtr0304855;parent_type=mRNA" - - - -	2695	15,064,058 – 15,064,153	-	8	101	80.20	-3.02	0.80	0.998416
1954	dm3.chr2L	15,067,552 – 15,067,632	- - CDS="CDS;ID=CDS_CG4170:2_708;Name=vig-cds;Parent=FBtr0080718,FBtr0080719,FBtr0080720,FBtr0080721;parent_type=mRNA" - - - - -	2696	15,067,552 – 15,067,632	-	13	97	72.89	-1.66	0.40	0.672106
1955	dm3.chr2L	15,073,718 – 15,073,819	- - - intron="intron;ID=intron_FBgn0262526:8_FBgn0262526:9;Name=vas-in;Parent=FBtr0304854;parent_type=mRNA" - - - -	2697	15,073,718 – 15,073,819	+	12	110	62.07	-1.16	0.31	0.644415
1956	dm3.chr2L	15,075,607 – 15,075,685	- - - - - - - -	2698	15,075,607 – 15,075,685	-	11	87	67.12	-0.96	0.47	0.767361
1957	dm3.chr2L	15,075,793 – 15,075,911	- - CDS="CDS;ID=CDS_CG15270:1_754;Name=CG15270-cds;Parent=FBtr0080703;parent_type=mRNA" - - - - -	2699	15,075,793 – 15,075,910	+	12	118	82.41	-1.23	0.68	0.579385
1957	dm3.chr2L	15,075,793 – 15,075,911		2700	15,075,794 – 15,075,911	+	12	124	82.19	-1.32	0.68	0.621811
1958	dm3.chr2L	15,095,453 – 15,095,548	- - - intron="intron;ID=intron_CG15270:16_CG15270:17;Name=CG15270-in;Parent=FBtr0080702,FBtr0080703;parent_type=mRNA" - - - -	2701	15,095,453 – 15,095,548	+	10	107	59.94	-0.36	0.48	0.810846
1959	dm3.chr2L	15,098,635 – 15,098,730	- - - - - - - -	2702	15,098,635 – 15,098,730	-	8	110	78.33	-1.51	0.63	0.736093
1960	dm3.chr2L	15,099,426 – 15,099,499	- - - - - - - -	2703	15,099,426 – 15,099,499	-	14	87	71.41	-0.96	0.56	0.866287
1961	dm3.chr2L	15,107,122 – 15,107,232	- - - - - - - -	2704	15,107,122 – 15,107,232	-	11	110	76.37	-1.38	0.51	0.684364
1962	dm3.chr2L	15,109,928 – 15,109,995	- - CDS="CDS;ID=CDS_CG15269:1_736;Name=CG15269-cds;Parent=FBtr0080704;parent_type=mRNA" - - - - -	2705	15,109,928 – 15,109,995	+	13	79	71.19	-0.50	0.60	0.609016
1963	dm3.chr2L	15,120,574 – 15,120,683	- - - - - - - -	2706	15,120,574 – 15,120,683	-	4	109	86.24	-1.98	0.73	0.728570
1964	dm3.chr2L	15,126,115 – 15,126,222	- - - - - - - -	2707	15,126,115 – 15,126,222	+	11	121	85.39	-2.66	0.72	0.984657
1965	dm3.chr2L	15,172,026 – 15,172,116	- - - intron="intron;ID=intron_FBgn0028888:5_FBgn0028888:4;Name=CG4168-in;Parent=FBtr0305559;parent_type=mRNA" - - - -	2708	15,172,026 – 15,172,116	+	12	110	79.69	-1.49	0.76	0.916718
1966	dm3.chr2L	15,181,162 – 15,181,255	- - - - - - - -	2709	15,181,162 – 15,181,255	-	12	105	77.44	-1.54	0.60	0.908433
1967	dm3.chr2L	15,184,436 – 15,184,531	- - - - - - - -	2710	15,184,436 – 15,184,531	+	6	97	79.40	-1.48	0.58	0.538900
1968	dm3.chr2L	15,200,413 – 15,200,511	- - - - - - - -	2711	15,200,413 – 15,200,511	-	9	117	66.00	-0.87	0.50	0.796997
1969	dm3.chr2L	15,228,542 – 15,228,648	- - - - - - - -	2712	15,228,542 – 15,228,648	-	5	116	72.53	-1.48	0.55	0.792273
1970	dm3.chr2L	15,236,876 – 15,236,969	- - - intron="intron;ID=intron_FBgn0028516:5_FBgn0028516:4;Name=ZnT35C-in;Parent=FBtr0080714,FBtr0080715;parent_type=mRNA" - - - -	2713	15,236,876 – 15,236,969	+	7	95	67.29	-2.63	0.24	0.813144
1971	dm3.chr2L	15,266,224 – 15,266,299	- - - - - - - -	2714	15,266,224 – 15,266,299	-	7	90	60.63	-1.43	0.43	0.960131
1972	dm3.chr2L	15,272,005 – 15,272,119	- - - - - - - -	2715	15,272,005 – 15,272,119	+	3	119	73.86	-2.19	0.59	0.913273
1973	dm3.chr2L	15,276,129 – 15,276,219	- - - - - - - -	2716	15,276,129 – 15,276,219	+	11	108	77.20	-1.48	0.51	0.583725
1974	dm3.chr2L	15,296,480 – 15,296,581	- - - - - - - -	2717	15,296,480 – 15,296,581	-	5	109	88.77	-2.88	0.67	0.942037
1975	dm3.chr2L	15,298,550 – 15,298,665	- - CDS="CDS;ID=CDS_FBgn0028852:1_825;Name=CG15262-cds;Parent=FBtr0080733;parent_type=mRNA" - - - - -	2718	15,298,550 – 15,298,653	+	12	120	60.23	-1.95	0.20	0.697145
1975	dm3.chr2L	15,298,550 – 15,298,665		2719	15,298,555 – 15,298,665	+	12	120	60.20	-1.85	0.18	0.571235
1976	dm3.chr2L	15,306,317 – 15,306,411	- - - - - - - -	2720	15,306,317 – 15,306,411	-	12	115	64.59	-1.18	0.41	0.789356
1977	dm3.chr2L	15,344,847 – 15,344,969	- - - - - - - -	2721	15,344,847 – 15,344,969	+	11	139	71.13	-2.94	0.28	0.956215
1978	dm3.chr2L	15,347,054 – 15,347,149	- - - - - - - -	2722	15,347,054 – 15,347,149	+	11	102	71.90	-1.35	0.49	0.705462
1979	dm3.chr2L	15,350,610 – 15,350,712	- - - - - - - -	2723	15,350,610 – 15,350,712	-	4	102	76.77	-1.31	0.75	0.750633
1980	dm3.chr2L	15,358,839 – 15,358,926	- - - - - - - -	2724	15,358,839 – 15,358,926	+	6	89	76.69	-1.46	0.55	0.629082
1981	dm3.chr2L	15,368,875 – 15,368,990	- - - - - - - -	2725	15,368,875 – 15,368,989	+	12	117	75.68	-1.53	0.54	0.891743
				2726	15,368,875 – 15,368,989	-	12	117	75.68	-3.47	0.70	0.999770
				2727	15,368,876 – 15,368,990	+	12	117	75.97	-1.79	0.51	0.922810
				2728	15,368,876 – 15,368,990	-	12	117	75.97	-3.62	0.73	0.999778
1982	dm3.chr2L	15,372,211 – 15,372,321	- - - - - - - -	2729	15,372,211 – 15,372,321	-	7	110	70.65	-1.07	0.44	0.592317
1983	dm3.chr2L	15,376,896 – 15,376,988	- - - - - - - -	2730	15,376,896 – 15,376,988	-	5	92	98.48	-1.32	0.93	0.507820
1984	dm3.chr2L	15,377,460 – 15,377,558	- - - - - - - -	2731	15,377,460 – 15,377,558	+	6	102	88.93	-1.60	0.81	0.627072
1984	dm3.chr2L	15,377,460 – 15,377,558	- - - - - - - -	2732	15,377,460 – 15,377,558	-	6	102	88.93	-2.83	0.95	0.996385
1985	dm3.chr2L	15,378,168 – 15,378,284	- - - - - - - -	2733	15,378,168 – 15,378,284	+	8	118	77.28	-2.79	0.60	0.996577
1986	dm3.chr2L	15,378,754 – 15,378,808	- - - - - - - -	2734	15,378,754 – 15,378,808	-	5	54	88.87	-1.80	0.90	0.923389
1987	dm3.chr2L	15,383,915 – 15,383,966	- - - - - - - -	2735	15,383,915 – 15,383,966	+	6	58	89.50	-2.83	0.57	0.776150
1988	dm3.chr2L	15,388,639 – 15,388,746	- - - - - - - -	2736	15,388,639 – 15,388,746	-	11	118	74.03	-1.23	0.53	0.747606
1989	dm3.chr2L	15,388,812 – 15,388,914	- - - - - - - -	2737	15,388,812 – 15,388,914	+	9	103	82.97	-1.79	0.64	0.709018
1990	dm3.chr2L	15,388,940 – 15,389,034	- - - - - - - -	2738	15,388,940 – 15,389,034	+	9	99	82.69	-2.02	0.65	0.925323
1991	dm3.chr2L	15,391,110 – 15,391,201	- - - - - - - -	2739	15,391,110 – 15,391,201	-	9	103	70.47	-2.58	0.44	0.995929
1992	dm3.chr2L	15,393,501 – 15,393,594	- - - - - - - -	2740	15,393,501 – 15,393,594	+	6	105	63.59	-1.62	0.33	0.748486
1993	dm3.chr2L	15,395,587 – 15,395,688	- - - - - - - -	2741	15,395,587 – 15,395,688	+	6	106	69.08	-1.54	0.38	0.560483
1994	dm3.chr2L	15,397,186 – 15,397,294	- - - - - - - -	2742	15,397,186 – 15,397,294	-	8	110	69.98	-1.81	0.48	0.955073
1995	dm3.chr2L	15,397,716 – 15,397,813	- - - - - - - -	2743	15,397,716 – 15,397,813	+	5	108	81.51	-1.79	0.80	0.922273
1996	dm3.chr2L	15,400,730 – 15,400,837	- - - - - - - -	2744	15,400,730 – 15,400,837	+	9	114	70.89	-1.92	0.45	0.970591
1997	dm3.chr2L	15,406,283 – 15,406,381	- - - - - - - -	2745	15,406,283 – 15,406,381	+	11	119	87.87	-1.68	0.85	0.873910
1997	dm3.chr2L	15,406,283 – 15,406,381	- - - - - - - -	2746	15,406,283 – 15,406,381	-	11	119	87.87	-3.01	0.95	0.997658
1998	dm3.chr2L	15,407,470 – 15,407,569	- - - - - - - -	2747	15,407,470 – 15,407,569	+	5	99	93.23	-1.56	0.90	0.754364
1998	dm3.chr2L	15,407,470 – 15,407,569	- - - - - - - -	2748	15,407,470 – 15,407,569	-	5	99	93.23	-1.60	0.88	0.703451
1999	dm3.chr2L	15,412,515 – 15,412,614	- - - - - - - -	2749	15,412,515 – 15,412,614	+	11	103	81.73	-2.27	0.63	0.963780
2000	dm3.chr2L	15,415,622 – 15,415,720	- - - - - - - -	2750	15,415,622 – 15,415,720	+	6	104	74.56	-1.73	0.71	0.977598
2001	dm3.chr2L	15,422,892 – 15,422,987	- - - - - - - -	2751	15,422,892 – 15,422,987	+	7	108	78.28	-2.27	0.65	0.976946
2002	dm3.chr2L	15,427,965 – 15,428,081	- - - - - - - -	2752	15,427,965 – 15,428,081	+	6	116	77.84	-1.67	0.60	0.741076
2003	dm3.chr2L	15,467,997 – 15,468,150	- - - - - - - -	2753	15,467,997 – 15,468,150	+	9	165	95.29	-1.77	0.85	0.636025
2004	dm3.chr2L	15,471,594 – 15,471,701	- - - - - - - -	2754	15,471,594 – 15,471,701	-	11	113	77.53	-2.71	0.28	0.695449
2005	dm3.chr2L	15,484,111 – 15,484,205	- - - - - - - -	2755	15,484,111 – 15,484,205	+	5	94	87.33	-1.69	0.82	0.776692
2006	dm3.chr2L	15,489,361 – 15,489,492	- - - - - - - -	2756	15,489,361 – 15,489,468	+	4	107	90.32	-3.65	0.87	0.997708
2006	dm3.chr2L	15,489,361 – 15,489,492	- - - - - - - -	2757	15,489,390 – 15,489,492	+	4	105	88.27	-1.67	0.81	0.626231
2007	dm3.chr2L	15,493,077 – 15,493,172	- - - - - - - -	2758	15,493,077 – 15,493,172	+	6	117	78.91	-2.03	0.66	0.921408
2008	dm3.chr2L	15,499,478 – 15,499,635	- - - intron="intron;ID=intron_CG4162:1_CG4162:2;Name=lace-in;Parent=FBtr0080738;parent_type=mRNA" - - - -	2759	15,499,478 – 15,499,568	+	7	99	63.93	-1.91	0.26	0.511328
2008	dm3.chr2L	15,499,478 – 15,499,635		2760	15,499,535 – 15,499,635	+	4	100	60.77	-1.94	0.37	0.906454
2009	dm3.chr2L	15,511,885 – 15,511,980	- - - - - - - -	2761	15,511,885 – 15,511,980	-	9	110	78.21	-2.64	0.50	0.966842
2010	dm3.chr2L	15,521,951 – 15,522,016	- - - - - - - -	2762	15,521,951 – 15,522,016	+	4	65	61.60	-0.62	0.54	0.695057
2011	dm3.chr2L	15,523,057 – 15,523,152	- - - - - - - -	2763	15,523,057 – 15,523,152	+	9	113	72.84	-1.77	0.50	0.912771
2011	dm3.chr2L	15,523,057 – 15,523,152	- - - - - - - -	2764	15,523,057 – 15,523,152	-	9	113	72.84	-1.98	0.36	0.612461
2012	dm3.chr2L	15,523,952 – 15,524,046	- - - - - - - -	2765	15,523,952 – 15,524,046	+	5	109	84.43	-1.92	0.87	0.950792
2013	dm3.chr2L	15,527,666 – 15,527,758	- - - - - - - -	2766	15,527,666 – 15,527,758	+	5	116	58.88	-1.71	0.39	0.920643
2014	dm3.chr2L	15,537,755 – 15,537,821	- - - - - - - -	2767	15,537,755 – 15,537,821	+	6	66	72.22	-2.19	0.56	0.992734
2015	dm3.chr2L	15,537,951 – 15,538,026	- - - - - - - -	2768	15,537,951 – 15,538,026	+	6	76	80.97	-1.91	0.54	0.608778
2016	dm3.chr2L	15,546,120 – 15,546,180	- - - - - - - -	2769	15,546,120 – 15,546,180	-	4	60	95.56	-1.33	0.92	0.565346
2017	dm3.chr2L	15,547,025 – 15,547,127	- - - - - - - -	2770	15,547,025 – 15,547,127	+	7	114	81.89	-1.83	0.69	0.875850
2017	dm3.chr2L	15,547,025 – 15,547,127	- - - - - - - -	2771	15,547,025 – 15,547,127	-	7	114	81.89	-1.64	0.66	0.705837
2018	dm3.chr2L	15,554,802 – 15,554,892	- - - - - - - -	2772	15,554,802 – 15,554,892	+	3	90	100.00	-1.33	1.00	0.826417
2019	dm3.chr2L	15,554,931 – 15,555,043	- - - - - - - -	2773	15,554,931 – 15,555,031	+	9	102	74.71	-1.59	0.53	0.920308
				2774	15,554,931 – 15,555,031	-	9	102	74.71	-1.81	0.46	0.891652
				2775	15,554,944 – 15,555,043	+	9	107	80.86	-1.69	0.58	0.599290
				2776	15,554,944 – 15,555,043	-	9	107	80.86	-2.56	0.47	0.884729
2020	dm3.chr2L	15,555,511 – 15,555,649	- - - intron="intron;ID=intron_FBgn0028370:3_FBgn0028370:4;Name=kek3-in;Parent=FBtr0080752,FBtr0300848;parent_type=mRNA" - - - -	2777	15,555,511 – 15,555,617	-	7	114	64.10	-1.25	0.34	0.517395
2020	dm3.chr2L	15,555,511 – 15,555,649		2778	15,555,545 – 15,555,649	+	7	110	66.82	-2.65	0.17	0.692579
2021	dm3.chr2L	15,556,199 – 15,556,274	- - - intron="intron;ID=intron_FBgn0028370:3_FBgn0028370:4;Name=kek3-in;Parent=FBtr0080752,FBtr0300848;parent_type=mRNA" - - - -	2779	15,556,199 – 15,556,274	+	12	88	73.49	-2.11	0.72	0.997131
2022	dm3.chr2L	15,581,226 – 15,581,349	- - - intron="intron;ID=intron_FBgn0028370:4_FBgn0028370:5;Name=kek3-in;Parent=FBtr0080752,FBtr0300848;parent_type=mRNA" - - - -	2780	15,581,226 – 15,581,328	+	10	112	64.59	-0.77	0.46	0.784086
2022	dm3.chr2L	15,581,226 – 15,581,349		2781	15,581,241 – 15,581,349	+	10	113	64.10	-0.86	0.43	0.779213
2023	dm3.chr2L	15,604,788 – 15,604,884	- - - - - - - -	2782	15,604,788 – 15,604,884	-	9	120	64.60	-1.60	0.35	0.770734
2024	dm3.chr2L	15,608,069 – 15,608,120	- - - - - - - -	2783	15,608,069 – 15,608,120	-	5	51	99.22	-1.63	0.90	0.554969
2025	dm3.chr2L	15,619,169 – 15,619,272	- - - - - - - -	2784	15,619,169 – 15,619,272	+	12	120	92.78	-2.00	0.74	0.500000
2026	dm3.chr2L	15,635,202 – 15,635,304	- - - - - - - -	2785	15,635,202 – 15,635,304	+	11	117	75.42	-2.96	0.25	0.745530
2027	dm3.chr2L	15,637,572 – 15,637,677	- - - - - - - -	2786	15,637,572 – 15,637,677	+	10	118	64.22	-1.31	0.33	0.563592
2028	dm3.chr2L	15,640,082 – 15,640,176	- - - - - - - -	2787	15,640,082 – 15,640,176	-	11	106	79.44	-1.43	0.59	0.564043
2029	dm3.chr2L	15,649,855 – 15,649,920	- - - intron="intron;ID=intron_FBgn0028863:7_FBgn0028863:6;Name=CG4587-in;Parent=FBtr0302502,FBtr0112943,FBtr0112944;parent_type=mRNA" - - - -	2788	15,649,855 – 15,649,920	-	7	68	74.96	-1.61	0.44	0.570016
2030	dm3.chr2L	15,650,354 – 15,650,445	- - - - - - - -	2789	15,650,354 – 15,650,445	+	11	119	61.32	-0.94	0.41	0.694817
2030	dm3.chr2L	15,650,354 – 15,650,445	- - - - - - - -	2790	15,650,354 – 15,650,445	-	11	119	61.32	-1.49	0.33	0.759276
2031	dm3.chr2L	15,652,634 – 15,652,736	- - CDS="CDS;ID=CDS_FBgn0028863:13_825;Name=CG4587-cds;Parent=FBtr0302502;parent_type=mRNA" - - - - -	2791	15,652,634 – 15,652,736	-	15	113	73.47	-1.25	0.43	0.572950
2032	dm3.chr2L	15,682,200 – 15,682,324	- - - - - - - -	2792	15,682,200 – 15,682,299	+	12	113	76.41	-1.16	0.65	0.842670
				2793	15,682,200 – 15,682,299	-	12	113	76.41	-1.65	0.67	0.972745
				2794	15,682,232 – 15,682,324	+	12	111	82.10	-2.46	0.71	0.987058
				2795	15,682,232 – 15,682,324	-	12	111	82.10	-2.12	0.59	0.870320
2033	dm3.chr2L	15,717,197 – 15,717,321	- - - - - - - -	2796	15,717,197 – 15,717,296	+	12	113	76.41	-1.16	0.65	0.842670
				2797	15,717,197 – 15,717,296	-	12	113	76.41	-1.65	0.67	0.972745
				2798	15,717,229 – 15,717,321	+	12	111	82.10	-2.46	0.71	0.987058
				2799	15,717,229 – 15,717,321	-	12	111	82.10	-2.12	0.59	0.870320
2034	dm3.chr2L	15,723,060 – 15,723,163	- - - - - - - -	2800	15,723,060 – 15,723,163	-	4	111	56.31	-1.55	0.38	0.894997
2035	dm3.chr2L	15,737,787 – 15,737,886	- - CDS="CDS;ID=CDS_FBgn0010382:6_861;Name=CycE-cds;Parent=FBtr0305561;parent_type=mRNA" - - - - -	2801	15,737,787 – 15,737,886	-	3	99	88.10	-1.32	0.92	0.750941
2036	dm3.chr2L	15,740,770 – 15,740,863	- - CDS="CDS;ID=CDS_FBgn0010382:7_747;Name=CycE-cds;Parent=FBtr0080774;parent_type=mRNA" - - - - -	2802	15,740,770 – 15,740,863	-	12	109	64.71	-1.20	0.43	0.903281
2037	dm3.chr2L	15,748,158 – 15,748,248	- - - - - - - -	2803	15,748,158 – 15,748,248	-	6	92	69.65	-0.92	0.51	0.593460
2038	dm3.chr2L	15,779,374 – 15,779,456	- - - - - - - -	2804	15,779,374 – 15,779,456	-	6	82	60.68	-0.94	0.62	0.986188
2039	dm3.chr2L	15,792,010 – 15,792,108	- - - - - - - -	2805	15,792,010 – 15,792,108	+	11	103	80.92	-1.73	0.66	0.876872
2040	dm3.chr2L	15,805,078 – 15,805,181	- - - - - - - -	2806	15,805,078 – 15,805,181	-	10	117	78.87	-1.83	0.53	0.773814
2041	dm3.chr2L	15,806,388 – 15,806,486	- - - - - - - -	2807	15,806,388 – 15,806,486	-	7	110	69.03	-1.93	0.47	0.938637
2042	dm3.chr2L	15,816,152 – 15,816,261	- - - - - - - -	2808	15,816,152 – 15,816,261	+	6	111	69.61	-0.90	0.56	0.691289
2043	dm3.chr2L	15,818,218 – 15,818,312	- - - - - - - -	2809	15,818,218 – 15,818,312	+	9	104	67.85	-1.27	0.38	0.564389
2043	dm3.chr2L	15,818,218 – 15,818,312	- - - - - - - -	2810	15,818,218 – 15,818,312	-	9	104	67.85	-2.15	0.37	0.968066
2044	dm3.chr2L	15,827,004 – 15,827,102	- - - - - - - -	2811	15,827,004 – 15,827,102	-	3	100	52.07	-1.85	0.26	0.510463
2045	dm3.chr2L	15,845,302 – 15,845,356	- - - - - - - -	2812	15,845,302 – 15,845,356	-	5	54	97.41	-1.22	1.01	0.858172
2046	dm3.chr2L	15,848,549 – 15,848,628	- - - - - - - -	2813	15,848,549 – 15,848,628	+	7	80	66.22	-0.68	0.45	0.523284
2047	dm3.chr2L	15,871,649 – 15,871,741	- - - - - - - -	2814	15,871,649 – 15,871,741	+	8	119	77.13	-2.14	0.46	0.599932
2047	dm3.chr2L	15,871,649 – 15,871,741	- - - - - - - -	2815	15,871,649 – 15,871,741	-	8	119	77.13	-2.25	0.51	0.841361
2048	dm3.chr2L	15,872,291 – 15,872,396	- - - - - - - -	2816	15,872,291 – 15,872,396	+	10	120	81.63	-2.04	0.65	0.895180
2049	dm3.chr2L	15,875,769 – 15,875,862	- - - - - - - -	2817	15,875,769 – 15,875,862	+	11	115	72.29	-2.35	0.44	0.979411
2050	dm3.chr2L	15,876,287 – 15,876,380	- - - - - - - -	2818	15,876,287 – 15,876,380	-	8	96	74.35	-2.32	0.32	0.715833
2051	dm3.chr2L	15,880,578 – 15,880,670	- - - - - - - -	2819	15,880,578 – 15,880,670	-	4	92	91.85	-2.13	0.77	0.691606
2052	dm3.chr2L	15,894,536 – 15,894,628	- - - - - - - -	2820	15,894,536 – 15,894,628	-	5	92	92.61	-1.73	0.81	0.517322
2053	dm3.chr2L	15,919,187 – 15,919,305	- - - - - - - -	2821	15,919,187 – 15,919,303	+	12	119	79.27	-1.27	0.75	0.932972
				2822	15,919,187 – 15,919,303	-	12	119	79.27	-0.81	0.67	0.547983
				2823	15,919,196 – 15,919,305	+	12	120	79.28	-1.14	0.81	0.908681
				2824	15,919,196 – 15,919,305	-	12	120	79.28	-0.94	0.71	0.667232
2054	dm3.chr2L	15,921,152 – 15,921,249	- - - - - - - -	2825	15,921,152 – 15,921,249	-	10	101	68.32	-1.57	0.32	0.606184
2055	dm3.chr2L	15,964,123 – 15,964,214	- - - - - - - -	2826	15,964,123 – 15,964,214	+	12	120	74.66	-0.66	0.68	0.524270
2056	dm3.chr2L	15,966,303 – 15,966,420	- - - - - - - -	2827	15,966,303 – 15,966,401	-	12	118	72.93	-1.18	0.50	0.733703
				2828	15,966,330 – 15,966,420	+	10	113	76.95	-0.68	0.80	0.543873
				2829	15,966,330 – 15,966,420	-	10	113	76.95	-1.24	0.62	0.530811
2057	dm3.chr2L	15,969,018 – 15,969,148	- - - - - - - -	2830	15,969,018 – 15,969,111	-	10	98	91.64	-0.92	0.98	0.731967
2057	dm3.chr2L	15,969,018 – 15,969,148	- - - - - - - -	2831	15,969,034 – 15,969,148	-	11	119	89.44	-2.51	0.77	0.964555
2058	dm3.chr2L	15,973,689 – 15,973,782	- - - - - - - -	2832	15,973,689 – 15,973,782	-	11	104	81.69	-2.40	0.53	0.905043
2059	dm3.chr2L	15,976,497 – 15,976,592	- - - - - - - -	2833	15,976,497 – 15,976,592	-	5	97	94.36	-1.48	0.93	0.776257
2060	dm3.chr2L	15,981,117 – 15,981,245	- - - - - - - -	2834	15,981,117 – 15,981,232	+	10	115	76.91	-2.96	0.38	0.985366
				2835	15,981,117 – 15,981,232	-	10	115	76.91	-1.69	0.42	0.581449
				2836	15,981,153 – 15,981,245	+	9	106	79.98	-2.84	0.69	0.996317
				2837	15,981,153 – 15,981,245	-	9	106	79.98	-1.63	0.58	0.597338
2061	dm3.chr2L	15,985,191 – 15,985,285	- - - - - - - -	2838	15,985,191 – 15,985,285	-	9	118	66.50	-1.94	0.30	0.712528
2062	dm3.chr2L	15,986,517 – 15,986,608	- - - - - - - -	2839	15,986,517 – 15,986,608	-	11	109	76.85	-0.80	0.69	0.532882
2063	dm3.chr2L	15,987,485 – 15,987,554	- - - - - - - -	2840	15,987,485 – 15,987,554	+	6	72	71.62	-0.89	0.60	0.668591
2064	dm3.chr2L	15,989,181 – 15,989,271	- - - - - - - -	2841	15,989,181 – 15,989,271	-	12	114	64.37	-1.46	0.32	0.583306
2065	dm3.chr2L	15,997,625 – 15,997,715	- - - - - - - -	2842	15,997,625 – 15,997,715	-	3	99	71.88	-2.52	0.60	0.976998
2066	dm3.chr2L	16,001,768 – 16,001,866	- - - intron="intron;ID=intron_FBgn0028644:1_FBgn0028644:2;Name=beat-Ic-in;Parent=FBtr0080801;parent_type=mRNA" - - - -	2843	16,001,768 – 16,001,866	+	5	98	91.02	-3.60	0.76	0.994545
2066	dm3.chr2L	16,001,768 – 16,001,866		2844	16,001,768 – 16,001,866	-	5	98	91.02	-2.10	0.75	0.664230
2067	dm3.chr2L	16,003,100 – 16,003,217	- - CDS="CDS;ID=CDS_FBgn0085196:1_773;Name=CG34167-cds;Parent=FBtr0112358;parent_type=mRNA" intron="intron;ID=intron_FBgn0028644:1_FBgn0028644:2;Name=beat-Ic-in;Parent=FBtr0080801;parent_type=mRNA" - - - -	2845	16,003,100 – 16,003,217	-	12	117	72.14	-1.32	0.41	0.584374
2068	dm3.chr2L	16,015,273 – 16,015,385	- - - intron="intron;ID=intron_FBgn0028644:2_FBgn0028644:3;Name=beat-Ic-in;Parent=FBtr0080801;parent_type=mRNA" - - - -	2846	16,015,273 – 16,015,385	-	12	120	82.98	-1.09	0.76	0.508424
2069	dm3.chr2L	16,022,991 – 16,023,082	- - - intron="intron;ID=intron_FBgn0028644:2_FBgn0028644:3;Name=beat-Ic-in;Parent=FBtr0080801;parent_type=mRNA" - - - -	2847	16,022,991 – 16,023,082	-	9	110	81.25	-1.18	0.82	0.730316
2070	dm3.chr2L	16,029,146 – 16,029,350	- - - intron="intron;ID=intron_FBgn0028644:2_FBgn0028644:3;Name=beat-Ic-in;Parent=FBtr0080801;parent_type=mRNA" - - - -	2848	16,029,146 – 16,029,250	+	9	112	71.61	-0.73	0.62	0.619862
2070	dm3.chr2L	16,029,146 – 16,029,350		2849	16,029,250 – 16,029,350	-	11	113	72.47	-2.17	0.42	0.951832
2071	dm3.chr2L	16,040,931 – 16,041,021	- - - - - - - -	2850	16,040,931 – 16,041,021	+	12	101	71.08	-0.47	0.58	0.566559
2072	dm3.chr2L	16,052,142 – 16,052,261	- - - intron="intron;ID=intron_CG4846:1_CG4846:2;Name=beat-Ia-in;Parent=FBtr0080806;parent_type=mRNA" - - - -	2851	16,052,142 – 16,052,261	-	3	119	92.61	-1.63	0.86	0.576995
2073	dm3.chr2L	16,052,961 – 16,053,053	- - - intron="intron;ID=intron_CG4846:1_CG4846:2;Name=beat-Ia-in;Parent=FBtr0080806;parent_type=mRNA" - - - -	2852	16,052,961 – 16,053,053	-	7	95	68.62	-2.20	0.31	0.882836
2074	dm3.chr2L	16,053,480 – 16,053,544	- - - intron="intron;ID=intron_CG4846:1_CG4846:2;Name=beat-Ia-in;Parent=FBtr0080806;parent_type=mRNA" - - - -	2853	16,053,480 – 16,053,544	+	9	67	69.64	-1.30	0.44	0.784906
2075	dm3.chr2L	16,085,708 – 16,085,782	- - - - - - - -	2854	16,085,708 – 16,085,782	+	4	74	93.61	-2.43	0.90	0.969856
2075	dm3.chr2L	16,085,708 – 16,085,782	- - - - - - - -	2855	16,085,708 – 16,085,782	-	4	74	93.61	-1.40	0.91	0.638454
2076	dm3.chr2L	16,090,897 – 16,091,006	- - - - - - - -	2856	16,090,897 – 16,090,995	+	12	120	89.45	-2.20	0.81	0.934480
2076	dm3.chr2L	16,090,897 – 16,091,006	- - - - - - - -	2857	16,090,897 – 16,091,006	+	12	120	89.09	-2.36	0.73	0.917176
2077	dm3.chr2L	16,104,462 – 16,104,555	- - - - - - - -	2858	16,104,462 – 16,104,555	+	11	109	72.90	-2.25	0.64	0.997768
2078	dm3.chr2L	16,125,340 – 16,125,402	- - - - - - - -	2859	16,125,340 – 16,125,402	-	6	62	93.55	-2.17	0.98	0.985972
2079	dm3.chr2L	16,125,503 – 16,125,594	- - - - - - - -	2860	16,125,503 – 16,125,594	-	6	91	76.49	-2.04	0.46	0.819252
2080	dm3.chr2L	16,151,781 – 16,151,879	- - - - - - - -	2861	16,151,781 – 16,151,879	-	12	112	62.93	-1.98	0.18	0.538951
2081	dm3.chr2L	16,160,821 – 16,160,918	- - - - - - - -	2862	16,160,821 – 16,160,918	-	11	100	79.02	-1.92	0.52	0.878977
2082	dm3.chr2L	16,170,874 – 16,170,988	- - CDS="CDS;ID=CDS_CG4894:1_724;Name=Ca-alpha1D-cds;Parent=FBtr0090004,FBtr0090003;parent_type=mRNA" - - - - -	2863	16,170,874 – 16,170,988	-	9	120	76.09	-2.19	0.40	0.801735
2083	dm3.chr2L	16,179,211 – 16,179,337	- - CDS="CDS;ID=CDS_CG4894:17_724;Name=Ca-alpha1D-cds;Parent=FBtr0090004,FBtr0090003;parent_type=mRNA" - - - - -	2864	16,179,211 – 16,179,337	+	14	129	84.29	-2.38	0.58	0.950205
2084	dm3.chr2L	16,186,066 – 16,186,197	- - CDS="CDS;ID=CDS_CG4894:29_705;Name=Ca-alpha1D-cds;Parent=FBtr0090005,FBtr0090006;parent_type=mRNA" - - - - -	2865	16,186,066 – 16,186,169	+	12	113	88.31	-1.67	0.92	0.944586
2084	dm3.chr2L	16,186,066 – 16,186,197		2866	16,186,091 – 16,186,197	+	11	114	88.53	-2.09	0.87	0.964122
2085	dm3.chr2L	16,189,032 – 16,189,152	- - CDS="CDS;ID=CDS_CG4894:30_725;Name=Ca-alpha1D-cds;Parent=FBtr0090003;parent_type=mRNA" - - - - -	2867	16,189,032 – 16,189,152	+	13	120	89.56	-1.32	0.80	0.517352
2086	dm3.chr2L	16,192,643 – 16,192,717	- - - - - - - -	2868	16,192,643 – 16,192,717	-	10	74	71.32	-0.95	0.57	0.914063
2087	dm3.chr2L	16,205,327 – 16,205,419	- - - - - - - -	2869	16,205,327 – 16,205,419	-	8	102	78.12	-1.51	0.63	0.730082
2088	dm3.chr2L	16,215,769 – 16,215,889	- - - - - - - -	2870	16,215,769 – 16,215,867	+	10	101	85.33	-1.64	0.65	0.512023
2088	dm3.chr2L	16,215,769 – 16,215,889	- - - - - - - -	2871	16,215,797 – 16,215,889	+	11	102	81.74	-1.80	0.60	0.763640
2089	dm3.chr2L	16,217,668 – 16,217,762	- - - - - - - -	2872	16,217,668 – 16,217,762	-	7	114	69.94	-1.46	0.55	0.891056
2090	dm3.chr2L	16,239,786 – 16,239,938	- - CDS="CDS;ID=CDS_FBgn0261999:11_843;Name=CG42817-cds;Parent=FBtr0303797;parent_type=mRNA" - - - - -	2873	16,239,786 – 16,239,938	+	12	172	75.37	-1.38	0.55	0.817631
2090	dm3.chr2L	16,239,786 – 16,239,938		2874	16,239,786 – 16,239,938	-	12	172	75.37	-1.78	0.58	0.966219
2091	dm3.chr2L	16,251,795 – 16,251,867	- - - - - - - -	2875	16,251,795 – 16,251,867	-	8	79	55.66	-1.55	0.28	0.894897
2092	dm3.chr2L	16,254,832 – 16,254,886	- - - - - - - -	2876	16,254,832 – 16,254,886	+	4	62	62.93	-2.04	0.29	0.500000
2092	dm3.chr2L	16,254,832 – 16,254,886	- - - - - - - -	2877	16,254,832 – 16,254,886	-	4	62	62.93	-1.82	0.33	0.516617
2093	dm3.chr2L	16,256,924 – 16,257,001	- - - - - - - -	2878	16,256,924 – 16,257,001	-	6	77	61.01	-1.11	0.43	0.921747
2094	dm3.chr2L	16,272,056 – 16,272,113	- - - intron="intron;ID=intron_CG7664:2_CG7664:3;Name=crp-in;Parent=FBtr0080854;parent_type=mRNA" - - - -	2879	16,272,056 – 16,272,113	+	4	57	62.57	-2.26	0.62	0.999003
2094	dm3.chr2L	16,272,056 – 16,272,113		2880	16,272,056 – 16,272,113	-	4	57	62.57	-2.34	0.59	0.999015
2095	dm3.chr2L	16,272,636 – 16,272,741	- - - intron="intron;ID=intron_CG7664:2_CG7664:3;Name=crp-in;Parent=FBtr0080854;parent_type=mRNA" - - - -	2881	16,272,636 – 16,272,741	-	4	106	80.42	-2.79	0.41	0.659385
2096	dm3.chr2L	16,273,576 – 16,273,682	- - - intron="intron;ID=intron_CG7664:2_CG7664:3;Name=crp-in;Parent=FBtr0080854;parent_type=mRNA" - - - -	2882	16,273,576 – 16,273,682	-	5	106	95.66	-1.15	0.95	0.603224
2097	dm3.chr2L	16,277,875 – 16,277,928	- - - intron="intron;ID=intron_CG7664:2_CG7664:3;Name=crp-in;Parent=FBtr0080854;parent_type=mRNA" - - - -	2883	16,277,875 – 16,277,928	+	7	53	70.84	-2.00	0.45	0.941300
2097	dm3.chr2L	16,277,875 – 16,277,928		2884	16,277,875 – 16,277,928	-	7	53	70.84	-1.85	0.41	0.815280
2098	dm3.chr2L	16,285,062 – 16,285,120	- - - intron="intron;ID=intron_CG7664:1_CG7664:2;Name=crp-in;Parent=FBtr0080854;parent_type=mRNA" - - - -	2885	16,285,062 – 16,285,120	+	9	59	71.67	-1.41	0.42	0.693780
2099	dm3.chr2L	16,318,354 – 16,318,458	- - - intron="intron;ID=intron_CG5848:4_CG5848:5;Name=cact-in;Parent=FBtr0080844,FBtr0080845,FBtr0080846,FBtr0080847;parent_type=mRNA" - - - -	2886	16,318,354 – 16,318,458	+	5	106	85.86	-1.50	0.91	0.894172
2100	dm3.chr2L	16,320,449 – 16,320,540	- - - intron="intron;ID=intron_CG5848:4_CG5848:5;Name=cact-in;Parent=FBtr0080844,FBtr0080845,FBtr0080846,FBtr0080847;parent_type=mRNA" - - - -	2887	16,320,449 – 16,320,540	-	7	93	64.12	-2.08	0.21	0.527657
2101	dm3.chr2L	16,320,876 – 16,320,970	- - - intron="intron;ID=intron_CG5848:4_CG5848:5;Name=cact-in;Parent=FBtr0080844,FBtr0080845,FBtr0080846,FBtr0080847;parent_type=mRNA" - - - -	2888	16,320,876 – 16,320,970	+	6	101	68.87	-1.92	0.32	0.654921
2101	dm3.chr2L	16,320,876 – 16,320,970		2889	16,320,876 – 16,320,970	-	6	101	68.87	-2.69	0.27	0.915394
2102	dm3.chr2L	16,339,616 – 16,339,715	- - CDS="CDS;ID=CDS_FBgn0259151:6_780;Name=CG42266-cds;Parent=FBtr0299599;parent_type=mRNA" - - - - -	2890	16,339,616 – 16,339,713	-	8	120	59.21	-2.77	0.20	0.938251
				2891	16,339,616 – 16,339,715	+	8	111	58.27	-2.76	0.25	0.994116
				2892	16,339,616 – 16,339,715	-	8	111	58.27	-3.22	0.26	0.998914
2103	dm3.chr2L	16,342,253 – 16,342,305	- - - - - - - -	2893	16,342,253 – 16,342,305	+	7	52	66.12	-1.99	0.32	0.841355
2104	dm3.chr2L	16,344,438 – 16,344,546	- - CDS="CDS;ID=CDS_FBgn0000307:3_760;Name=chif-cds;Parent=FBtr0080838;parent_type=mRNA" - - - - -	2894	16,344,438 – 16,344,546	+	11	108	85.61	-1.86	0.61	0.597750
2105	dm3.chr2L	16,345,567 – 16,345,659	- - CDS="CDS;ID=CDS_FBgn0000307:3_760;Name=chif-cds;Parent=FBtr0080838;parent_type=mRNA" - - - - -	2895	16,345,567 – 16,345,659	+	7	95	72.62	-2.24	0.37	0.888812
2106	dm3.chr2L	16,346,481 – 16,346,574	- - CDS="CDS;ID=CDS_FBgn0000307:3_760;Name=chif-cds;Parent=FBtr0080838;parent_type=mRNA" - - - - -	2896	16,346,481 – 16,346,574	-	7	94	81.32	-1.20	0.71	0.600476
2107	dm3.chr2L	16,356,686 – 16,356,776	- - - - - - - -	2897	16,356,686 – 16,356,776	-	7	114	57.88	-1.82	0.36	0.967061
2108	dm3.chr2L	16,357,930 – 16,358,029	- - - - - - - -	2898	16,357,930 – 16,358,029	+	6	104	63.99	-1.10	0.38	0.572447
2109	dm3.chr2L	16,367,957 – 16,368,060	- - - - - - - -	2899	16,367,957 – 16,368,060	+	4	107	80.13	-2.58	0.61	0.948066
2109	dm3.chr2L	16,367,957 – 16,368,060	- - - - - - - -	2900	16,367,957 – 16,368,060	-	4	107	80.13	-2.50	0.66	0.961975
2110	dm3.chr2L	16,374,534 – 16,374,668	- - - - - - - -	2901	16,374,534 – 16,374,668	+	12	140	90.10	-2.38	0.77	0.942578
2111	dm3.chr2L	16,377,336 – 16,377,430	- - - - - - - -	2902	16,377,336 – 16,377,430	-	5	99	82.31	-1.83	0.81	0.932713
2112	dm3.chr2L	16,378,739 – 16,378,855	- - - - - - - -	2903	16,378,739 – 16,378,855	+	8	118	76.09	-2.22	0.49	0.960587
2113	dm3.chr2L	16,390,048 – 16,390,145	- - - - - - - -	2904	16,390,048 – 16,390,145	+	9	120	71.25	-0.87	0.58	0.523292
2114	dm3.chr2L	16,390,497 – 16,390,591	- - - - - - - -	2905	16,390,497 – 16,390,591	+	8	114	64.88	-1.06	0.48	0.854694
2115	dm3.chr2L	16,403,644 – 16,403,694	- - - intron="intron;ID=intron_CG5888:3_CG5888:4;Name=CG5888-in;Parent=FBtr0080880;parent_type=mRNA" - - - -	2906	16,403,644 – 16,403,694	+	3	50	92.00	-2.40	0.71	0.611126
2116	dm3.chr2L	16,403,753 – 16,403,910	- - - intron="intron;ID=intron_CG5888:3_CG5888:4;Name=CG5888-in;Parent=FBtr0080880;parent_type=mRNA" - - - -	2907	16,403,753 – 16,403,865	+	7	117	78.28	-1.24	0.70	0.703178
				2908	16,403,793 – 16,403,898	+	7	112	70.40	-1.60	0.60	0.988878
				2909	16,403,793 – 16,403,898	-	7	112	70.40	-1.08	0.53	0.845533
				2910	16,403,805 – 16,403,910	+	7	112	75.28	-1.45	0.61	0.913350
2117	dm3.chr2L	16,406,346 – 16,406,439	- - - intron="intron;ID=intron_CG5888:1_CG5888:2;Name=CG5888-in;Parent=FBtr0080880;parent_type=mRNA" - - - -	2911	16,406,346 – 16,406,439	-	5	97	68.64	-1.49	0.44	0.629294
2118	dm3.chr2L	16,410,369 – 16,410,500	- - - intron="intron;ID=intron_CG5888:1_CG5888:2;Name=CG5888-in;Parent=FBtr0080880;parent_type=mRNA" - - - -	2912	16,410,369 – 16,410,481	+	11	119	80.78	-2.40	0.46	0.850246
2118	dm3.chr2L	16,410,369 – 16,410,500		2913	16,410,382 – 16,410,500	+	8	120	82.94	-2.73	0.60	0.980583
2119	dm3.chr2L	16,411,905 – 16,412,015	- - - intron="intron;ID=intron_CG5888:1_CG5888:2;Name=CG5888-in;Parent=FBtr0080880;parent_type=mRNA" - - - -	2914	16,411,905 – 16,412,015	-	7	111	80.34	-1.37	0.69	0.780183
2120	dm3.chr2L	16,413,878 – 16,413,979	- - - intron="intron;ID=intron_CG5888:1_CG5888:2;Name=CG5888-in;Parent=FBtr0080880;parent_type=mRNA" - - - -	2915	16,413,878 – 16,413,979	+	5	103	92.83	-2.54	0.82	0.941451
2120	dm3.chr2L	16,413,878 – 16,413,979		2916	16,413,878 – 16,413,979	-	5	103	92.83	-2.13	0.80	0.768402
2121	dm3.chr2L	16,415,119 – 16,415,232	- - - intron="intron;ID=intron_CG5888:1_CG5888:2;Name=CG5888-in;Parent=FBtr0080880;parent_type=mRNA" - - - -	2917	16,415,119 – 16,415,232	+	11	113	72.65	-2.19	0.34	0.866386
2122	dm3.chr2L	16,434,479 – 16,434,581	- - - intron="intron;ID=intron_CG5888:1_CG5888:2;Name=CG5888-in;Parent=FBtr0080880;parent_type=mRNA" - - - -	2918	16,434,479 – 16,434,581	-	11	110	86.87	-1.46	0.89	0.896890
2123	dm3.chr2L	16,435,406 – 16,435,488	- - - intron="intron;ID=intron_CG5888:1_CG5888:2;Name=CG5888-in;Parent=FBtr0080880;parent_type=mRNA" - - - -	2919	16,435,406 – 16,435,488	+	12	83	93.80	-2.36	0.67	0.512419
2124	dm3.chr2L	16,441,717 – 16,441,816	- - - intron="intron;ID=intron_CG5888:1_CG5888:2;Name=CG5888-in;Parent=FBtr0080880;parent_type=mRNA" - - - -	2920	16,441,717 – 16,441,816	-	4	104	58.93	-0.55	0.51	0.644376
2125	dm3.chr2L	16,448,966 – 16,449,062	- - - - - - - -	2921	16,448,966 – 16,449,062	-	7	96	64.80	-0.99	0.41	0.701488
2126	dm3.chr2L	16,460,201 – 16,460,300	- - - - - - - -	2922	16,460,201 – 16,460,300	+	12	112	80.45	-1.38	0.62	0.661107
2127	dm3.chr2L	16,464,577 – 16,464,710	- - - - - - - -	2923	16,464,577 – 16,464,674	-	7	115	75.21	-1.92	0.55	0.911511
2127	dm3.chr2L	16,464,577 – 16,464,710	- - - - - - - -	2924	16,464,603 – 16,464,710	-	7	118	77.08	-1.79	0.53	0.786897
2128	dm3.chr2L	16,465,697 – 16,465,791	- - - - - - - -	2925	16,465,697 – 16,465,791	+	10	120	76.93	-1.00	0.64	0.542130
2128	dm3.chr2L	16,465,697 – 16,465,791	- - - - - - - -	2926	16,465,697 – 16,465,791	-	10	120	76.93	-1.18	0.89	0.946041
2129	dm3.chr2L	16,469,368 – 16,469,477	- - - intron="intron;ID=intron_CG4952:7_CG4952:8;Name=dac-in;Parent=FBtr0080879,FBtr0080878,FBtr0080875,FBtr0080876,FBtr0100399,FBtr0100400,FBtr0080877;parent_type=mRNA" - - - -	2927	16,469,368 – 16,469,477	+	4	110	86.61	-2.31	0.60	0.550965
2130	dm3.chr2L	16,469,753 – 16,469,824	- - - intron="intron;ID=intron_CG4952:7_CG4952:8;Name=dac-in;Parent=FBtr0080879,FBtr0080878,FBtr0080875,FBtr0080876,FBtr0100399,FBtr0100400,FBtr0080877;parent_type=mRNA" - - - -	2928	16,469,753 – 16,469,824	-	8	71	84.36	-1.18	0.90	0.846113
2131	dm3.chr2L	16,471,456 – 16,471,566	- - - intron="intron;ID=intron_CG4952:7_CG4952:8;Name=dac-in;Parent=FBtr0080879,FBtr0080878,FBtr0080875,FBtr0080876,FBtr0100399,FBtr0100400,FBtr0080877;parent_type=mRNA" - - - -	2929	16,471,456 – 16,471,566	+	10	117	76.67	-1.18	0.58	0.625787
2132	dm3.chr2L	16,472,490 – 16,472,624	- - CDS="CDS;ID=CDS_CG4952:6_754;Name=dac-cds;Parent=FBtr0080879,FBtr0080878,FBtr0080875,FBtr0080876,FBtr0100399,FBtr0100400,FBtr0080877;parent_type=mRNA" - - - - -	2930	16,472,490 – 16,472,584	+	8	97	65.22	-1.53	0.30	0.576381
				2931	16,472,490 – 16,472,584	-	8	97	65.22	-1.01	0.41	0.702475
				2932	16,472,525 – 16,472,624	+	9	108	70.76	-0.84	0.50	0.563447
				2933	16,472,525 – 16,472,624	-	9	108	70.76	-1.20	0.59	0.951016
2133	dm3.chr2L	16,493,547 – 16,493,660	- - - intron="intron;ID=intron_CG4599:1_CG4599:2;Name=Tpr2-in;Parent=FBtr0080866;parent_type=mRNA" - - - -	2934	16,493,547 – 16,493,660	+	5	115	80.91	-2.11	0.63	0.893999
2134	dm3.chr2L	16,499,704 – 16,499,820	- - - intron="intron;ID=intron_CG4599:5_CG4599:2;Name=Tpr2-in;Parent=FBtr0080867;parent_type=mRNA" - - - -	2935	16,499,704 – 16,499,798	+	9	120	78.46	-2.40	0.68	0.988607
				2936	16,499,704 – 16,499,798	-	9	120	78.46	-1.84	0.68	0.935362
				2937	16,499,721 – 16,499,820	+	8	103	85.82	-2.55	0.58	0.871620
2135	dm3.chr2L	16,513,774 – 16,513,895	- - - intron="intron;ID=intron_FBgn0032587:2_FBgn0032587:1;Name=CG5953-in;Parent=FBtr0301144;parent_type=mRNA" - - - -	2938	16,513,774 – 16,513,895	+	3	121	56.47	-1.84	0.34	0.791537
2136	dm3.chr2L	16,548,839 – 16,548,932	- - - intron="intron;ID=intron_FBgn0259735:1_FBgn0259735:2;Name=CG42389-in;Parent=FBtr0300002,FBtr0300003;parent_type=mRNA" - - - -	2939	16,548,839 – 16,548,932	-	10	107	79.25	-2.06	0.57	0.863492
2137	dm3.chr2L	16,553,002 – 16,553,104	- - - - - - - -	2940	16,553,002 – 16,553,104	+	7	107	81.54	-1.66	0.59	0.596921
2138	dm3.chr2L	16,554,523 – 16,554,625	- - - - - - - -	2941	16,554,523 – 16,554,625	+	9	115	66.31	-0.59	0.50	0.600837
2139	dm3.chr2L	16,554,811 – 16,554,920	- - - - - - - -	2942	16,554,811 – 16,554,913	+	9	116	77.86	-3.38	0.64	0.999304
				2943	16,554,811 – 16,554,913	-	9	116	77.86	-3.20	0.44	0.992388
				2944	16,554,817 – 16,554,920	+	9	116	80.88	-4.07	0.66	0.999608
				2945	16,554,817 – 16,554,920	-	9	116	80.88	-3.34	0.46	0.990247
2140	dm3.chr2L	16,567,477 – 16,567,581	- - - intron="intron;ID=intron_FBgn0259735:2_FBgn0259735:3;Name=CG42389-in;Parent=FBtr0300002;parent_type=mRNA" - - - -	2946	16,567,477 – 16,567,581	-	6	107	80.75	-2.24	0.61	0.941466
2141	dm3.chr2L	16,567,582 – 16,567,706	- - - intron="intron;ID=intron_FBgn0259735:2_FBgn0259735:3;Name=CG42389-in;Parent=FBtr0300002;parent_type=mRNA" - - - -	2947	16,567,582 – 16,567,690	+	4	120	71.31	-2.00	0.57	0.956331
2141	dm3.chr2L	16,567,582 – 16,567,706		2948	16,567,616 – 16,567,706	-	3	103	79.28	-0.80	0.94	0.667681
2142	dm3.chr2L	16,570,348 – 16,570,439	- - - intron="intron;ID=intron_FBgn0259735:2_FBgn0259735:3;Name=CG42389-in;Parent=FBtr0300002;parent_type=mRNA" - - - -	2949	16,570,348 – 16,570,439	+	6	98	77.84	-1.63	0.55	0.584686
2142	dm3.chr2L	16,570,348 – 16,570,439		2950	16,570,348 – 16,570,439	-	6	98	77.84	-2.08	0.55	0.888669
2143	dm3.chr2L	16,585,442 – 16,585,512	- - - intron="intron;ID=intron_FBgn0259735:2_FBgn0259735:3;Name=CG42389-in;Parent=FBtr0300002;parent_type=mRNA" - - - -	2951	16,585,442 – 16,585,512	-	7	86	72.29	-1.00	0.60	0.655863
2144	dm3.chr2L	16,590,081 – 16,590,180	- - - intron="intron;ID=intron_FBgn0259735:2_FBgn0259735:3;Name=CG42389-in;Parent=FBtr0300002;parent_type=mRNA" - - - -	2952	16,590,081 – 16,590,180	+	5	99	79.14	-2.17	0.50	0.658696
2145	dm3.chr2L	16,596,594 – 16,596,664	- - - intron="intron;ID=intron_FBgn0259735:2_FBgn0259735:3;Name=CG42389-in;Parent=FBtr0300002;parent_type=mRNA" - - - -	2953	16,596,594 – 16,596,664	+	7	70	80.46	-2.37	0.61	0.969963
2145	dm3.chr2L	16,596,594 – 16,596,664		2954	16,596,594 – 16,596,664	-	7	70	80.46	-1.44	0.64	0.622189
2146	dm3.chr2L	16,605,741 – 16,605,844	- - - intron="intron;ID=intron_FBgn0259735:5_FBgn0259735:6;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2955	16,605,741 – 16,605,844	+	6	109	65.52	-1.24	0.41	0.580405
2147	dm3.chr2L	16,618,474 – 16,618,583	- - - intron="intron;ID=intron_FBgn0259735:5_FBgn0259735:6;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2956	16,618,474 – 16,618,583	+	11	125	66.59	-1.19	0.49	0.940074
2147	dm3.chr2L	16,618,474 – 16,618,583		2957	16,618,474 – 16,618,583	-	11	125	66.59	-1.31	0.38	0.726411
2148	dm3.chr2L	16,619,160 – 16,619,264	- - - intron="intron;ID=intron_FBgn0259735:5_FBgn0259735:6;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2958	16,619,160 – 16,619,264	+	5	110	82.33	-1.56	0.69	0.557181
2149	dm3.chr2L	16,623,349 – 16,623,446	- - - intron="intron;ID=intron_FBgn0259735:6_FBgn0259735:7;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2959	16,623,349 – 16,623,446	-	7	109	76.47	-1.35	0.59	0.723789
2150	dm3.chr2L	16,626,920 – 16,627,056	- - - intron="intron;ID=intron_FBgn0259735:6_FBgn0259735:7;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2960	16,626,920 – 16,627,019	+	5	100	86.98	-1.83	0.84	0.889465
				2961	16,626,920 – 16,627,019	-	5	100	86.98	-1.77	0.85	0.884264
				2962	16,626,952 – 16,627,056	+	5	104	78.51	-2.00	0.57	0.824711
				2963	16,626,952 – 16,627,056	-	5	104	78.51	-1.64	0.67	0.822074
2151	dm3.chr2L	16,628,950 – 16,629,062	- - - intron="intron;ID=intron_FBgn0259735:6_FBgn0259735:7;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2964	16,628,950 – 16,629,062	+	4	113	76.17	-1.46	0.70	0.778389
2152	dm3.chr2L	16,635,005 – 16,635,097	- - - intron="intron;ID=intron_FBgn0259735:6_FBgn0259735:7;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2965	16,635,005 – 16,635,097	+	10	104	64.41	-1.25	0.45	0.955916
2152	dm3.chr2L	16,635,005 – 16,635,097		2966	16,635,005 – 16,635,097	-	10	104	64.41	-1.07	0.44	0.901723
2153	dm3.chr2L	16,635,985 – 16,636,097	- - - intron="intron;ID=intron_FBgn0259735:6_FBgn0259735:7;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2967	16,635,985 – 16,636,097	+	6	116	56.25	-1.83	0.25	0.846653
2154	dm3.chr2L	16,636,582 – 16,636,706	- - - intron="intron;ID=intron_FBgn0259735:6_FBgn0259735:7;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2968	16,636,582 – 16,636,674	+	7	100	66.60	-1.67	0.33	0.575819
2154	dm3.chr2L	16,636,582 – 16,636,706		2969	16,636,610 – 16,636,706	-	5	106	59.92	-1.12	0.42	0.689136
2155	dm3.chr2L	16,638,324 – 16,638,420	- - - intron="intron;ID=intron_FBgn0259735:6_FBgn0259735:7;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2970	16,638,324 – 16,638,420	+	7	101	69.87	-0.77	0.63	0.707966
2156	dm3.chr2L	16,638,589 – 16,638,715	- - - intron="intron;ID=intron_FBgn0259735:6_FBgn0259735:7;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2971	16,638,589 – 16,638,687	-	7	106	77.47	-1.81	0.78	0.973416
				2972	16,638,622 – 16,638,715	+	9	121	72.00	-1.96	0.52	0.938384
				2973	16,638,622 – 16,638,715	-	9	121	72.00	-2.24	0.58	0.989093
2157	dm3.chr2L	16,648,394 – 16,648,496	- - - intron="intron;ID=intron_FBgn0259735:6_FBgn0259735:7;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2974	16,648,394 – 16,648,496	-	4	109	94.65	-2.81	0.84	0.967574
2158	dm3.chr2L	16,650,344 – 16,650,453	- - - intron="intron;ID=intron_FBgn0259735:6_FBgn0259735:7;Name=CG42389-in;Parent=FBtr0300004;parent_type=mRNA" - - - -	2975	16,650,344 – 16,650,453	+	8	118	71.36	-0.66	0.67	0.740968
2159	dm3.chr2L	16,653,301 – 16,653,392	- - - intron="intron;ID=intron_FBgn0259735:7_FBgn0259735:9;Name=CG42389-in;Parent=FBtr0300003,FBtr0300004;parent_type=mRNA" - - - -	2976	16,653,301 – 16,653,392	-	6	119	80.80	-1.58	0.68	0.577611
2160	dm3.chr2L	16,680,400 – 16,680,510	- - - - - - - -	2977	16,680,400 – 16,680,510	+	5	110	88.73	-3.29	0.90	0.997547
2160	dm3.chr2L	16,680,400 – 16,680,510	- - - - - - - -	2978	16,680,400 – 16,680,510	-	5	110	88.73	-3.06	0.87	0.995457
2161	dm3.chr2L	16,687,625 – 16,687,770	- - - intron="intron;ID=intron_CG17161:16_CG17161:3;Name=grp-in;Parent=FBtr0080886;parent_type=mRNA" - - - -	2979	16,687,625 – 16,687,770	-	5	147	81.81	-1.89	0.66	0.779128
2162	dm3.chr2L	16,689,120 – 16,689,231	- - - intron="intron;ID=intron_CG17161:16_CG17161:3;Name=grp-in;Parent=FBtr0080886;parent_type=mRNA" - - - -	2980	16,689,120 – 16,689,231	+	5	111	94.95	-1.51	0.91	0.695027
2162	dm3.chr2L	16,689,120 – 16,689,231		2981	16,689,120 – 16,689,231	-	5	111	94.95	-1.62	0.91	0.765569
2163	dm3.chr2L	16,691,526 – 16,691,619	- - - intron="intron;ID=intron_CG17161:3_CG17161:4;Name=grp-in;Parent=FBtr0080885,FBtr0080884,FBtr0080886;parent_type=mRNA" - - - -	2982	16,691,526 – 16,691,619	-	9	111	70.62	-2.20	0.50	0.990518
2164	dm3.chr2L	16,693,202 – 16,693,296	- - - intron="intron;ID=intron_CG17161:4_CG17161:5;Name=grp-in;Parent=FBtr0080885,FBtr0080884,FBtr0080886;parent_type=mRNA" - - - -	2983	16,693,202 – 16,693,296	-	8	110	70.78	-1.58	0.38	0.541288
2165	dm3.chr2L	16,694,120 – 16,694,225	- - - intron="intron;ID=intron_CG17161:4_CG17161:5;Name=grp-in;Parent=FBtr0080885,FBtr0080884,FBtr0080886;parent_type=mRNA" - - - -	2984	16,694,120 – 16,694,225	+	6	106	61.41	-1.89	0.47	0.995527
2165	dm3.chr2L	16,694,120 – 16,694,225		2985	16,694,120 – 16,694,225	-	6	106	61.41	-1.26	0.33	0.513856
2166	dm3.chr2L	16,697,919 – 16,698,024	FBnoncoding="pre_miRNA;ID=FBtr0304398;Name=mir-9c-RM;Parent=FBgn0262430;Alias=CR42985-RM;Dbxref=FlyBase_Annotation_IDs:CR42985-RM,miRBase:MI0000413" - - intron="intron;ID=intron_CG17161:6_CG17161:7;Name=grp-in;Parent=FBtr0080885,FBtr0080884,FBtr0080886,FBtr0100459;parent_type=mRNA" - - - "mirBase_v16=dse-mir-9c\|1.1e-47"	2986	16,697,919 – 16,698,010	+	12	109	84.13	-5.32	0.90	0.999003
				2987	16,697,919 – 16,698,010	-	12	109	84.13	-5.20	0.93	0.998804
				2988	16,697,923 – 16,698,024	+	12	116	87.14	-4.51	0.85	0.999362
				2989	16,697,923 – 16,698,024	-	12	116	87.14	-3.98	0.98	0.999011
2167	dm3.chr2L	16,698,563 – 16,698,654	FBnoncoding="pre_miRNA;ID=FBtr0304470;Name=mir-79-RM;Parent=FBgn0262452;Alias=CR43019-RM;Dbxref=FlyBase_Annotation_IDs:CR43019-RM,miRBase:MI0000374" - - intron="intron;ID=intron_CG17161:7_CG17161:8;Name=grp-in;Parent=FBtr0080885,FBtr0080884,FBtr0080886;parent_type=mRNA" "Rfam_10.0=RF00237;mir-9;AAPU01010522.1/88150-88211\|5.6e-24" "Noncode_2.0=n178700_u177798_NW_045819_miRNA_Anopheles\|8.4e-20" "unique_Noncode_2.0=u177798_miRNA_Anopheles\|7.3e-20" "mirBase_v16=dme-mir-79\|8.7e-45"	2990	16,698,563 – 16,698,654	+	13	94	80.92	-4.22	0.88	0.999406
2167	dm3.chr2L	16,698,563 – 16,698,654		2991	16,698,563 – 16,698,654	-	13	94	80.92	-4.61	0.85	0.999532
2168	dm3.chr2L	16,698,753 – 16,698,882	FBnoncoding="pre_miRNA;ID=FBtr0304345;Name=mir-9b-RM;Parent=FBgn0262413;Alias=CR42960-RM;Dbxref=FlyBase_Annotation_IDs:CR42960-RM,miRBase:MI0000415" - - intron="intron;ID=intron_CG17161:7_CG17161:8;Name=grp-in;Parent=FBtr0080885,FBtr0080884,FBtr0080886;parent_type=mRNA" - - - "mirBase_v16=dme-mir-9b\|4.9e-41"	2992	16,698,753 – 16,698,882	+	13	148	60.06	-2.85	0.36	0.999633
2168	dm3.chr2L	16,698,753 – 16,698,882		2993	16,698,753 – 16,698,882	-	13	148	60.06	-2.52	0.35	0.998785
2169	dm3.chr2L	16,724,758 – 16,724,887	FBnoncoding="pre_miRNA;ID=FBtr0304427;Name=mir-1006-RM;Parent=FBgn0262438;Alias=CR42999-RM;Dbxref=FlyBase_Annotation_IDs:CR42999-RM,miRBase:MI0005867" - - intron="intron;ID=intron_CG17332:3_CG17332:4;Name=VhaSFD-in;Parent=FBtr0080940,FBtr0080941,FBtr0080942;parent_type=mRNA" - - - "mirBase_v16=dsi-mir-1006\|9.0e-52"	2994	16,724,758 – 16,724,851	-	13	106	88.11	-2.39	0.77	0.965588
2169	dm3.chr2L	16,724,758 – 16,724,887		2995	16,724,795 – 16,724,887	-	14	107	78.99	-2.28	0.34	0.543278
2170	dm3.chr2L	16,730,673 – 16,730,793	- - CDS="CDS;ID=CDS_FBgn0032595:1_841;Name=CG17996-cds;Parent=FBtr0080937;parent_type=mRNA" - - - - -	2996	16,730,673 – 16,730,793	+	13	120	72.62	-2.09	0.25	0.512676
2170	dm3.chr2L	16,730,673 – 16,730,793		2997	16,730,673 – 16,730,793	-	13	120	72.62	-1.45	0.38	0.658558
2171	dm3.chr2L	16,744,674 – 16,744,780	- - CDS="CDS;ID=CDS_FBgn0032600:5_708;Name=CG17912-cds;Parent=FBtr0080893;parent_type=mRNA" - - - - -	2998	16,744,674 – 16,744,780	-	11	120	74.76	-2.22	0.36	0.770107
2172	dm3.chr2L	16,751,422 – 16,751,531	- - - - - - - -	2999	16,751,422 – 16,751,531	+	12	116	69.10	-2.54	0.42	0.998320
2173	dm3.chr2L	16,752,687 – 16,752,779	- - - - - - - -	3000	16,752,687 – 16,752,779	+	11	100	66.91	-1.82	0.36	0.926785
2173	dm3.chr2L	16,752,687 – 16,752,779	- - - - - - - -	3001	16,752,687 – 16,752,779	-	11	100	66.91	-1.90	0.34	0.915444
2174	dm3.chr2L	16,768,960 – 16,769,050	- - - intron="intron;ID=intron_FBgn0086783:4_FBgn0086783:5;Name=Mhc-in;Parent=FBtr0080895,FBtr0080898,FBtr0080899,FBtr0080904,FBtr0301828;parent_type=mRNA" - - - -	3002	16,768,960 – 16,769,050	+	12	104	51.05	-3.47	-0.00	0.967179
2174	dm3.chr2L	16,768,960 – 16,769,050		3003	16,768,960 – 16,769,050	-	12	104	51.05	-2.96	-0.00	0.826160
2175	dm3.chr2L	16,769,453 – 16,769,608	- - CDS="CDS;ID=CDS_FBgn0086783:6_803;Name=Mhc-cds;Parent=FBtr0080906,FBtr0080907,FBtr0301827;parent_type=mRNA" intron="intron;ID=intron_FBgn0086783:5_FBgn0086783:7;Name=Mhc-in;Parent=FBtr0080895,FBtr0080898,FBtr0080899,FBtr0080904,FBtr0301828;parent_type=mRNA" - - - -	3004	16,769,453 – 16,769,608	+	15	176	84.87	-2.23	0.60	0.844847
2176	dm3.chr2L	16,771,032 – 16,771,155	- - CDS="CDS;ID=CDS_FBgn0086783:9_803;Name=Mhc-cds;Parent=FBtr0080906,FBtr0080907,FBtr0301827,FBtr0301828;parent_type=mRNA" - - - - -	3005	16,771,032 – 16,771,155	+	15	142	77.28	-1.41	0.72	0.966025
2177	dm3.chr2L	16,776,439 – 16,776,502	- - - intron="intron;ID=intron_FBgn0086783:16_FBgn0086783:17;Name=Mhc-in;Parent=FBtr0080899,FBtr0080902,FBtr0080903;parent_type=mRNA" - - - -	3006	16,776,439 – 16,776,502	-	12	78	67.98	-0.98	0.44	0.500000
2178	dm3.chr2L	16,778,674 – 16,778,773	- - - intron="intron;ID=intron_FBgn0086783:20_FBgn0086783:23;Name=Mhc-in;Parent=FBtr0080897,FBtr0080905,FBtr0080907,FBtr0301829;parent_type=mRNA" - - - -	3007	16,778,674 – 16,778,773	+	9	103	71.09	-0.75	0.68	0.913386
2179	dm3.chr2L	16,779,634 – 16,779,711	- - - intron="intron;ID=intron_FBgn0086783:21_FBgn0086783:23;Name=Mhc-in;Parent=FBtr0080898,FBtr0080900,FBtr0080903;parent_type=mRNA" - - - -	3008	16,779,634 – 16,779,711	+	6	77	89.70	-1.91	0.79	0.783887
2179	dm3.chr2L	16,779,634 – 16,779,711		3009	16,779,634 – 16,779,711	-	6	77	89.70	-1.81	0.75	0.573528
2180	dm3.chr2L	16,780,348 – 16,780,478	- - - intron="intron;ID=intron_FBgn0086783:22_FBgn0086783:23;Name=Mhc-in;Parent=FBtr0080895,FBtr0080896,FBtr0080899,FBtr0080902,FBtr0080904,FBtr0301827,FBtr0301828;parent_type=mRNA" - - - -	3010	16,780,348 – 16,780,449	+	7	103	67.29	-4.36	0.45	0.999958
				3011	16,780,348 – 16,780,449	-	7	103	67.29	-2.84	0.29	0.982988
				3012	16,780,380 – 16,780,478	+	7	105	69.94	-3.02	0.34	0.993330
				3013	16,780,380 – 16,780,478	-	7	105	69.94	-1.97	0.31	0.638528
2181	dm3.chr2L	16,782,846 – 16,782,983	- - CDS="CDS;ID=CDS_FBgn0086783:25_814;Name=Mhc-cds;Parent=FBtr0080897,FBtr0080898,FBtr0080899,FBtr0080900,FBtr0080901,FBtr0080902,FBtr0080905;parent_type=mRNA" - - - - -	3014	16,782,846 – 16,782,966	+	14	120	92.38	-2.28	0.77	0.880119
				3015	16,782,846 – 16,782,966	-	14	120	92.38	-1.51	0.84	0.614082
				3016	16,782,864 – 16,782,983	+	11	120	93.20	-1.88	0.86	0.857225
				3017	16,782,864 – 16,782,983	-	11	120	93.20	-1.80	0.85	0.795882
2182	dm3.chr2L	16,785,856 – 16,785,949	- - - intron="intron;ID=intron_FBgn0086783:28_FBgn0086783:29;Name=Mhc-in;Parent=FBtr0080895,FBtr0080896,FBtr0080897,FBtr0080898,FBtr0080899,FBtr0080900,FBtr0080901,FBtr0080902,FBtr0080903,FBtr0080904,FBtr0080905,FBtr0080906,FBtr0080907,FBtr0301827,FBtr0301828,FBtr0301829;parent_type=mRNA" - - - -	3018	16,785,856 – 16,785,949	-	13	104	65.22	-0.36	0.62	0.931887
2183	dm3.chr2L	16,808,658 – 16,808,760	- - - intron="intron;ID=intron_FBgn0032607:1_FBgn0032607:2;Name=CG13272-in;Parent=FBtr0080914;parent_type=mRNA" - - - -	3019	16,808,658 – 16,808,760	-	9	103	72.62	-1.47	0.41	0.530514
2184	dm3.chr2L	16,816,571 – 16,816,624	- - - - - - - -	3020	16,816,571 – 16,816,624	+	5	65	70.83	-1.52	0.61	0.948300
2185	dm3.chr2L	16,852,732 – 16,852,837	- - - - - - - -	3021	16,852,732 – 16,852,837	-	3	108	73.83	-1.99	0.54	0.690380
2186	dm3.chr2L	16,870,022 – 16,870,114	- - - - - - - -	3022	16,870,022 – 16,870,114	+	6	94	90.43	-2.30	0.67	0.647277
2187	dm3.chr2L	16,871,708 – 16,871,807	- - - intron="intron;ID=intron_FBgn0051781:2_FBgn0051781:3;Name=CG31781-in;Parent=FBtr0302189;parent_type=mRNA" - - - -	3023	16,871,708 – 16,871,807	+	9	113	77.43	-1.73	0.49	0.656174
2188	dm3.chr2L	16,874,036 – 16,874,131	- - - intron="intron;ID=intron_FBgn0051781:2_FBgn0051781:3;Name=CG31781-in;Parent=FBtr0302189;parent_type=mRNA" - - - -	3024	16,874,036 – 16,874,131	+	11	103	72.97	-1.95	0.40	0.847755
2188	dm3.chr2L	16,874,036 – 16,874,131		3025	16,874,036 – 16,874,131	-	11	103	72.97	-2.35	0.42	0.972299
2189	dm3.chr2L	16,882,620 – 16,882,718	- - - intron="intron;ID=intron_FBgn0085342:3_FBgn0085342:4;Name=CG34313-in;Parent=FBtr0112511;parent_type=mRNA" - - - -	3026	16,882,620 – 16,882,718	+	5	98	87.04	-1.97	0.72	0.647333
2189	dm3.chr2L	16,882,620 – 16,882,718		3027	16,882,620 – 16,882,718	-	5	98	87.04	-3.56	0.74	0.996234
2190	dm3.chr2L	16,886,800 – 16,886,891	- - - - - - - -	3028	16,886,800 – 16,886,891	-	6	96	75.00	-2.08	0.71	0.992488
2191	dm3.chr2L	16,893,335 – 16,893,455	- - CDS="CDS;ID=CDS_FBgn0261671:3_857;Name=tweek-cds;Parent=FBtr0304927,FBtr0304928,FBtr0304929,FBtr0304930;parent_type=mRNA" - - - - -	3029	16,893,335 – 16,893,455	+	15	120	76.58	-1.36	0.45	0.603624
2192	dm3.chr2L	16,897,719 – 16,897,858	- - CDS="CDS;ID=CDS_FBgn0261671:8_857;Name=tweek-cds;Parent=FBtr0304927,FBtr0304928,FBtr0304929,FBtr0304930;parent_type=mRNA" - - - - -	3030	16,897,719 – 16,897,831	+	13	120	79.94	-2.29	0.58	0.970995
2192	dm3.chr2L	16,897,719 – 16,897,858		3031	16,897,759 – 16,897,858	+	13	120	77.70	-1.57	0.52	0.570809
2193	dm3.chr2L	16,910,411 – 16,910,520	- - - - - - - -	3032	16,910,411 – 16,910,520	+	5	113	83.10	-1.48	0.71	0.521848
2194	dm3.chr2L	16,920,904 – 16,920,976	- - - - - - - -	3033	16,920,904 – 16,920,976	+	12	78	77.83	-1.15	0.61	0.567142
2195	dm3.chr2L	16,939,251 – 16,939,344	- - - - - - - -	3034	16,939,251 – 16,939,344	-	11	116	77.90	-1.59	0.57	0.756220
2196	dm3.chr2L	16,941,188 – 16,941,281	- - - - - - - -	3035	16,941,188 – 16,941,281	-	10	111	68.13	-1.20	0.46	0.727967
2197	dm3.chr2L	16,951,284 – 16,951,336	- - - - - - - -	3036	16,951,284 – 16,951,336	-	6	53	92.23	-1.61	0.99	0.953987
2198	dm3.chr2L	16,963,335 – 16,963,479	- - - - - - - -	3037	16,963,335 – 16,963,479	+	6	144	73.30	-1.48	0.49	0.694163
2199	dm3.chr2L	16,964,992 – 16,965,073	- - - - - - - -	3038	16,964,992 – 16,965,073	-	9	82	76.99	-1.23	0.58	0.742123
2200	dm3.chr2L	16,966,003 – 16,966,068	- - - - - - - -	3039	16,966,003 – 16,966,068	+	7	72	65.07	-0.95	0.47	0.688032
2201	dm3.chr2L	16,979,924 – 16,980,007	- - - intron="intron;ID=intron_FBgn0053179:2_FBgn0053179:3;Name=beat-IIIb-in;Parent=FBtr0273449,FBtr0273450;parent_type=mRNA" - - - -	3040	16,979,924 – 16,980,007	-	5	94	52.92	-1.25	0.50	0.990562
2202	dm3.chr2L	16,988,752 – 16,988,812	- - - intron="intron;ID=intron_FBgn0053179:4_FBgn0053179:6;Name=beat-IIIb-in;Parent=FBtr0273450;parent_type=mRNA" - - - -	3041	16,988,752 – 16,988,812	+	3	60	85.14	-2.06	1.03	0.992965
2203	dm3.chr2L	16,989,208 – 16,989,365	- - - intron="intron;ID=intron_FBgn0053179:4_FBgn0053179:6;Name=beat-IIIb-in;Parent=FBtr0273450;parent_type=mRNA" - - - -	3042	16,989,208 – 16,989,365	+	8	159	70.67	-2.45	0.25	0.640114
2204	dm3.chr2L	16,989,609 – 16,989,718	- - - intron="intron;ID=intron_FBgn0053179:4_FBgn0053179:6;Name=beat-IIIb-in;Parent=FBtr0273450;parent_type=mRNA" - - - -	3043	16,989,609 – 16,989,718	-	6	112	77.03	-1.46	0.57	0.663738
2205	dm3.chr2L	16,994,407 – 16,994,501	- - - - - - - -	3044	16,994,407 – 16,994,501	+	6	97	95.86	-1.10	0.95	0.561270
2206	dm3.chr2L	16,997,812 – 16,997,902	- - - - - - - -	3045	16,997,812 – 16,997,902	+	11	112	78.28	-1.47	0.59	0.717205
2207	dm3.chr2L	17,020,774 – 17,020,878	- - - - - - - -	3046	17,020,774 – 17,020,878	+	11	112	72.19	-1.04	0.48	0.614378
2207	dm3.chr2L	17,020,774 – 17,020,878	- - - - - - - -	3047	17,020,774 – 17,020,878	-	11	112	72.19	-1.15	0.45	0.581153
2208	dm3.chr2L	17,021,883 – 17,021,973	- - - - - - - -	3048	17,021,883 – 17,021,973	-	6	96	69.20	-1.31	0.53	0.900541
2209	dm3.chr2L	17,034,221 – 17,034,312	- - - - - - - -	3049	17,034,221 – 17,034,312	-	5	109	91.06	-1.70	0.80	0.513417
2210	dm3.chr2L	17,047,242 – 17,047,333	- - CDS="CDS;ID=CDS_FBgn0032625:1_835;Name=CG15136-cds;Parent=FBtr0080954;parent_type=mRNA" - - - - -	3050	17,047,242 – 17,047,333	+	6	94	77.25	-2.03	0.60	0.954058
2211	dm3.chr2L	17,049,194 – 17,049,311	- - - - - - - -	3051	17,049,194 – 17,049,311	-	10	118	71.39	-1.30	0.39	0.577862
2212	dm3.chr2L	17,062,314 – 17,062,370	- - - - - - - -	3052	17,062,314 – 17,062,370	+	5	56	94.11	-1.27	0.94	0.699867
2213	dm3.chr2L	17,062,969 – 17,063,059	- - - - - - - -	3053	17,062,969 – 17,063,059	+	6	90	72.06	-1.18	0.56	0.714716
2214	dm3.chr2L	17,064,079 – 17,064,130	- - - - - - - -	3054	17,064,079 – 17,064,130	-	4	51	95.42	-1.17	0.94	0.560992
2215	dm3.chr2L	17,075,948 – 17,076,059	- - - - - - - -	3055	17,075,948 – 17,076,055	-	8	114	73.78	-2.82	0.31	0.935130
2215	dm3.chr2L	17,075,948 – 17,076,059	- - - - - - - -	3056	17,075,952 – 17,076,059	-	9	114	77.18	-2.93	0.41	0.985009
2216	dm3.chr2L	17,078,631 – 17,078,729	- - - - - - - -	3057	17,078,631 – 17,078,729	-	12	119	64.10	-1.31	0.41	0.919831
2217	dm3.chr2L	17,079,957 – 17,080,057	- - - - - - - -	3058	17,079,957 – 17,080,057	+	12	116	64.07	-1.20	0.35	0.549769
2218	dm3.chr2L	17,086,798 – 17,086,895	- - - - - - - -	3059	17,086,798 – 17,086,895	+	12	116	82.90	-1.40	0.78	0.794660
2218	dm3.chr2L	17,086,798 – 17,086,895	- - - - - - - -	3060	17,086,798 – 17,086,895	-	12	116	82.90	-1.76	0.67	0.786540
2219	dm3.chr2L	17,093,474 – 17,093,541	- - - - - - - -	3061	17,093,474 – 17,093,541	+	6	73	80.91	-1.60	0.65	0.591771
2220	dm3.chr2L	17,095,859 – 17,095,909	- - - - - - - -	3062	17,095,859 – 17,095,909	-	3	50	94.00	-1.50	1.07	0.982738
2221	dm3.chr2L	17,098,252 – 17,098,322	- - - - - - - -	3063	17,098,252 – 17,098,322	-	6	72	52.78	-1.02	0.36	0.847445
2222	dm3.chr2L	17,100,674 – 17,100,830	- - - - - - - -	3064	17,100,674 – 17,100,770	+	10	104	69.23	-2.55	0.37	0.993612
				3065	17,100,674 – 17,100,770	-	10	104	69.23	-2.00	0.37	0.956115
				3066	17,100,702 – 17,100,808	+	12	116	66.53	-1.40	0.47	0.955569
				3067	17,100,702 – 17,100,808	-	12	116	66.53	-1.31	0.42	0.855218
				3068	17,100,731 – 17,100,830	+	9	111	73.46	-1.51	0.50	0.793720
				3069	17,100,731 – 17,100,830	-	9	111	73.46	-1.08	0.63	0.830230
2223	dm3.chr2L	17,102,423 – 17,102,523	- - - - - - - -	3070	17,102,423 – 17,102,523	-	6	108	77.16	-1.04	0.67	0.617985
2224	dm3.chr2L	17,103,306 – 17,103,409	- - - - - - - -	3071	17,103,306 – 17,103,409	-	10	120	85.36	-2.09	0.67	0.846613
2225	dm3.chr2L	17,107,262 – 17,107,352	- - - - - - - -	3072	17,107,262 – 17,107,352	-	9	96	86.79	-1.52	0.83	0.828226
2226	dm3.chr2L	17,119,427 – 17,119,539	- - - - - - - -	3073	17,119,427 – 17,119,539	-	8	119	73.31	-1.20	0.67	0.896253
2227	dm3.chr2L	17,125,130 – 17,125,225	- - CDS="CDS;ID=CDS_FBgn0051784:3_825;Name=CG31784-cds;Parent=FBtr0302499;parent_type=mRNA" - - - - -	3074	17,125,130 – 17,125,225	-	6	104	64.73	-1.22	0.40	0.697939
2228	dm3.chr2L	17,132,928 – 17,133,015	- - - - - - - -	3075	17,132,928 – 17,133,015	-	5	87	78.02	-1.64	0.63	0.656678
2229	dm3.chr2L	17,143,601 – 17,143,698	- - - intron="intron;ID=intron_FBgn0032627:1_FBgn0032627:2;Name=beat-IIIa-in;Parent=FBtr0303301;parent_type=mRNA" - - - -	3076	17,143,601 – 17,143,698	+	10	109	75.41	-1.36	0.53	0.678636
2230	dm3.chr2L	17,151,483 – 17,151,566	- - - intron="intron;ID=intron_FBgn0032627:1_FBgn0032627:2;Name=beat-IIIa-in;Parent=FBtr0303301;parent_type=mRNA" - - - -	3077	17,151,483 – 17,151,566	+	3	94	56.49	-1.05	0.48	0.539383
2231	dm3.chr2L	17,160,900 – 17,161,006	- - - intron="intron;ID=intron_FBgn0032627:2_FBgn0032627:3;Name=beat-IIIa-in;Parent=FBtr0303301;parent_type=mRNA" - - - -	3078	17,160,900 – 17,161,006	-	12	114	65.36	-0.51	0.45	0.500000
2232	dm3.chr2L	17,198,754 – 17,198,866	- - - intron="intron;ID=intron_CG15138:2_CG15138:3;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3079	17,198,754 – 17,198,866	-	6	112	81.40	-1.43	0.66	0.568439
2233	dm3.chr2L	17,213,330 – 17,213,444	- - - intron="intron;ID=intron_CG15138:2_CG15138:3;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3080	17,213,330 – 17,213,444	+	11	118	80.56	-0.96	0.75	0.653234
2234	dm3.chr2L	17,224,719 – 17,224,780	- - - intron="intron;ID=intron_CG15138:2_CG15138:3;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3081	17,224,719 – 17,224,780	+	7	61	86.34	-2.61	0.84	0.992331
2234	dm3.chr2L	17,224,719 – 17,224,780		3082	17,224,719 – 17,224,780	-	7	61	86.34	-2.33	0.77	0.970417
2235	dm3.chr2L	17,225,168 – 17,225,231	- - - intron="intron;ID=intron_CG15138:2_CG15138:3;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3083	17,225,168 – 17,225,231	+	6	70	76.35	-1.99	0.41	0.586323
2235	dm3.chr2L	17,225,168 – 17,225,231		3084	17,225,168 – 17,225,231	-	6	70	76.35	-1.71	0.55	0.843925
2236	dm3.chr2L	17,227,598 – 17,227,652	- - - intron="intron;ID=intron_CG15138:2_CG15138:3;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3085	17,227,598 – 17,227,652	+	6	59	63.70	-0.72	0.48	0.589146
2237	dm3.chr2L	17,233,145 – 17,233,239	- - - intron="intron;ID=intron_CG15138:2_CG15138:3;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3086	17,233,145 – 17,233,239	+	7	113	68.79	-1.99	0.43	0.953788
2238	dm3.chr2L	17,234,336 – 17,234,395	- - - intron="intron;ID=intron_CG15138:2_CG15138:3;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3087	17,234,336 – 17,234,395	-	5	59	95.93	-2.17	0.89	0.908849
2239	dm3.chr2L	17,234,873 – 17,234,942	- - - intron="intron;ID=intron_CG15138:2_CG15138:3;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3088	17,234,873 – 17,234,942	-	5	69	98.26	-4.89	1.01	0.998773
2240	dm3.chr2L	17,247,455 – 17,247,587	- - - intron="intron;ID=intron_CG15138:2_CG15138:3;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3089	17,247,455 – 17,247,551	+	8	114	64.27	-1.60	0.31	0.569095
2240	dm3.chr2L	17,247,455 – 17,247,587		3090	17,247,490 – 17,247,587	+	6	110	88.16	-1.60	0.81	0.651709
2241	dm3.chr2L	17,257,668 – 17,257,772	- - - intron="intron;ID=intron_CG15138:1_CG15138:2;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3091	17,257,668 – 17,257,772	-	6	106	80.37	-2.16	0.61	0.935542
2242	dm3.chr2L	17,259,730 – 17,259,820	- - - intron="intron;ID=intron_CG15138:1_CG15138:2;Name=beat-IIIc-in;Parent=FBtr0080971,FBtr0080972;parent_type=mRNA" - - - -	3092	17,259,730 – 17,259,820	-	6	111	49.83	-1.63	0.23	0.702429
2243	dm3.chr2L	17,267,723 – 17,267,778	- - - - - - - -	3093	17,267,723 – 17,267,778	+	5	60	76.22	-1.59	0.62	0.737454
2244	dm3.chr2L	17,278,596 – 17,278,705	- - - - - - - -	3094	17,278,596 – 17,278,705	+	6	120	75.21	-1.72	0.52	0.763945
2245	dm3.chr2L	17,280,509 – 17,280,603	- - - - - - - -	3095	17,280,509 – 17,280,603	+	5	97	63.12	-0.82	0.55	0.898444
2246	dm3.chr2L	17,283,833 – 17,283,936	- - - - - - - -	3096	17,283,833 – 17,283,936	+	5	111	70.25	-1.75	0.56	0.958584
2247	dm3.chr2L	17,293,704 – 17,293,810	- - - - "Rfam_10.0=RF01059;mir-598;AACZ02231433.1/922-1017\|3.5e-07" - - -	3097	17,293,704 – 17,293,810	-	6	114	82.33	-2.16	0.54	0.662585
2247	dm3.chr2L	17,293,704 – 17,293,810		3098	17,293,708 – 17,293,810	-	6	110	83.57	-2.71	0.54	0.909380
2248	dm3.chr2L	17,304,496 – 17,304,580	- - - - - - - -	3099	17,304,496 – 17,304,580	+	9	90	81.01	-3.03	0.55	0.993690
2249	dm3.chr2L	17,306,180 – 17,306,289	- - - - - - - -	3100	17,306,180 – 17,306,289	-	6	115	76.29	-1.74	0.49	0.665719
2250	dm3.chr2L	17,308,264 – 17,308,354	- - - - - - - -	3101	17,308,264 – 17,308,354	+	8	101	82.18	-1.65	0.73	0.813275
2251	dm3.chr2L	17,313,536 – 17,313,626	- - - - - - - -	3102	17,313,536 – 17,313,626	+	8	96	67.64	-1.75	0.44	0.972593
2251	dm3.chr2L	17,313,536 – 17,313,626	- - - - - - - -	3103	17,313,536 – 17,313,626	-	8	96	67.64	-1.17	0.45	0.829280
2252	dm3.chr2L	17,313,680 – 17,313,771	- - - - - - - -	3104	17,313,680 – 17,313,771	-	7	107	83.16	-1.88	0.71	0.859130
2253	dm3.chr2L	17,315,784 – 17,315,886	- - - - - - - -	3105	17,315,784 – 17,315,886	-	7	103	73.56	-1.14	0.51	0.631591
2254	dm3.chr2L	17,321,873 – 17,321,969	- - - - - - - -	3106	17,321,873 – 17,321,969	-	5	96	97.29	-2.24	1.00	0.986342
2255	dm3.chr2L	17,322,953 – 17,323,005	- - - - - - - -	3107	17,322,953 – 17,323,005	-	8	63	71.27	-2.12	0.53	0.982503
2256	dm3.chr2L	17,323,093 – 17,323,186	- - - - - - - -	3108	17,323,093 – 17,323,186	-	8	102	86.38	-3.05	0.85	0.996563
2257	dm3.chr2L	17,335,467 – 17,335,518	- - - - - - - -	3109	17,335,467 – 17,335,518	-	3	51	92.76	-2.12	0.85	0.856424
2258	dm3.chr2L	17,346,127 – 17,346,254	- - - - - - - -	3110	17,346,127 – 17,346,218	-	12	121	82.06	-2.30	0.88	0.993026
2258	dm3.chr2L	17,346,127 – 17,346,254	- - - - - - - -	3111	17,346,138 – 17,346,254	-	12	120	97.86	-2.32	0.97	0.980640
2259	dm3.chr2L	17,348,356 – 17,348,452	- - - - - - - -	3112	17,348,356 – 17,348,452	+	8	108	73.90	-1.57	0.59	0.938949
2259	dm3.chr2L	17,348,356 – 17,348,452	- - - - - - - -	3113	17,348,356 – 17,348,452	-	8	108	73.90	-1.17	0.56	0.691930
2260	dm3.chr2L	17,350,587 – 17,350,689	- - - - - - - -	3114	17,350,587 – 17,350,689	-	7	118	82.37	-2.42	0.66	0.944870
2261	dm3.chr2L	17,354,970 – 17,355,064	- - - - - - - -	3115	17,354,970 – 17,355,064	+	6	112	67.31	-2.09	0.32	0.652694
2262	dm3.chr2L	17,357,165 – 17,357,270	- - - - - - - -	3116	17,357,165 – 17,357,270	-	11	111	76.40	-1.39	0.48	0.625769
2263	dm3.chr2L	17,373,630 – 17,373,720	- - CDS="CDS;ID=CDS_CG6860:3_725;Name=CG6860-cds;Parent=FBtr0080968,FBtr0080969;parent_type=mRNA" - - - - -	3117	17,373,630 – 17,373,720	-	12	117	72.62	-1.16	0.51	0.557812
2264	dm3.chr2L	17,377,236 – 17,377,353	- - - intron="intron;ID=intron_CG6860:1_CG6860:2;Name=CG6860-in;Parent=FBtr0080968,FBtr0080969;parent_type=mRNA" - - - -	3118	17,377,236 – 17,377,326	-	6	94	72.05	-1.91	0.55	0.979653
				3119	17,377,253 – 17,377,353	+	7	132	56.95	-1.10	0.35	0.531246
				3120	17,377,253 – 17,377,353	-	7	132	56.95	-1.26	0.46	0.958807
2265	dm3.chr2L	17,381,384 – 17,381,475	- - - intron="intron;ID=intron_CG6860:1_CG6860:2;Name=CG6860-in;Parent=FBtr0080968,FBtr0080969;parent_type=mRNA" - - - -	3121	17,381,384 – 17,381,475	-	7	96	73.65	-2.23	0.58	0.983516
2266	dm3.chr2L	17,398,521 – 17,398,653	- - - - - - - -	3122	17,398,521 – 17,398,613	+	6	96	76.12	-1.77	0.66	0.931682
2266	dm3.chr2L	17,398,521 – 17,398,653	- - - - - - - -	3123	17,398,552 – 17,398,653	+	8	105	77.59	-1.79	0.55	0.802884
2267	dm3.chr2L	17,402,519 – 17,402,578	- - - intron="intron;ID=intron_FBgn0020503:17_FBgn0020503:18;Name=CLIP-190-in;Parent=FBtr0301442,FBtr0290262;parent_type=mRNA" - - - -	3124	17,402,519 – 17,402,578	-	5	59	96.61	-1.00	1.00	0.724869
2268	dm3.chr2L	17,464,152 – 17,464,262	- - - - - - - -	3125	17,464,152 – 17,464,262	+	13	122	70.98	-1.41	0.44	0.856048
2269	dm3.chr2L	17,466,941 – 17,467,066	- - - intron="intron;ID=intron_FBgn0000183:10_FBgn0000183:9;Name=BicD-in;Parent=FBtr0081002,FBtr0305688;parent_type=mRNA" - - - -	3126	17,466,941 – 17,467,066	-	6	126	74.16	-1.35	0.53	0.712288
2270	dm3.chr2L	17,484,187 – 17,484,285	- - - - - - - -	3127	17,484,187 – 17,484,285	+	7	103	70.51	-1.63	0.35	0.500000
2271	dm3.chr2L	17,493,043 – 17,493,133	- - - - - - - -	3128	17,493,043 – 17,493,133	+	8	99	65.30	-1.43	0.44	0.889020
2272	dm3.chr2L	17,512,546 – 17,512,641	- - CDS="CDS;ID=CDS_FBgn0013810:15_848;Name=Dhc36C-cds;Parent=FBtr0304742;parent_type=mRNA" - - - - -	3129	17,512,546 – 17,512,641	-	15	120	77.26	-1.63	0.54	0.736465
2273	dm3.chr2L	17,512,990 – 17,513,041	- - CDS="CDS;ID=CDS_FBgn0013810:15_848;Name=Dhc36C-cds;Parent=FBtr0304742;parent_type=mRNA" - - - - -	3130	17,512,990 – 17,513,041	+	12	51	80.36	-2.29	0.64	0.980855
2273	dm3.chr2L	17,512,990 – 17,513,041		3131	17,512,990 – 17,513,041	-	12	51	80.36	-2.81	0.62	0.995181
2274	dm3.chr2L	17,538,825 – 17,538,936	- - - - - - - -	3132	17,538,825 – 17,538,933	+	5	108	94.35	-2.43	0.91	0.974307
				3133	17,538,825 – 17,538,933	-	5	108	94.35	-3.89	0.95	0.998583
				3134	17,538,828 – 17,538,936	+	5	108	93.24	-1.35	0.89	0.548749
				3135	17,538,828 – 17,538,936	-	5	108	93.24	-2.45	0.96	0.989820
2275	dm3.chr2L	17,547,086 – 17,547,179	- - - - - - - -	3136	17,547,086 – 17,547,179	+	6	94	72.27	-1.79	0.62	0.988229
2275	dm3.chr2L	17,547,086 – 17,547,179	- - - - - - - -	3137	17,547,086 – 17,547,179	-	6	94	72.27	-1.33	0.53	0.840150
2276	dm3.chr2L	17,549,103 – 17,549,206	- - - - - - - -	3138	17,549,103 – 17,549,206	-	12	117	88.40	-1.51	0.79	0.609994
2277	dm3.chr2L	17,560,744 – 17,560,874	- - - - - - - -	3139	17,560,744 – 17,560,852	-	10	112	92.53	-1.89	0.84	0.814603
2277	dm3.chr2L	17,560,744 – 17,560,874	- - - - - - - -	3140	17,560,772 – 17,560,874	-	12	115	90.76	-1.69	0.81	0.685643
2278	dm3.chr2L	17,566,376 – 17,566,471	FBnoncoding="pre_miRNA;ID=FBtr0304298;Name=mir-124-RM;Parent=FBgn0262398;Alias=CR42937-RM;Dbxref=FlyBase_Annotation_IDs:CR42937-RM,miRBase:MI0000373" - - - "Rfam_10.0=RF00239;mir-124;AAPT01021775.1/703690-703766\|6.2e-27" "Noncode_2.0=n178705_u177803_NW_045838_miRNA_Anopheles\|7.9e-11" "unique_Noncode_2.0=u177803_miRNA_Anopheles\|6.9e-11" "mirBase_v16=dme-mir-124\|2.4e-48"	3141	17,566,376 – 17,566,471	+	15	114	81.68	-3.70	0.89	0.999179
2278	dm3.chr2L	17,566,376 – 17,566,471		3142	17,566,376 – 17,566,471	-	15	114	81.68	-2.40	0.73	0.990449
2279	dm3.chr2L	17,569,093 – 17,569,187	- - - - - - - -	3143	17,569,093 – 17,569,187	+	4	94	89.18	-1.38	0.86	0.584177
2280	dm3.chr2L	17,574,616 – 17,574,739	FBnoncoding="pre_miRNA;ID=FBtr0304302;Name=mir-287-RM;Parent=FBgn0262400;Alias=CR42939-RM;Dbxref=FlyBase_Annotation_IDs:CR42939-RM,miRBase:MI0000381" - - - "Rfam_10.0=RF00788;mir-287;AAPQ01007040.1/1493287-1493379\|1.5e-34" - - "mirBase_v16=dme-mir-287\|4.9e-44"	3144	17,574,616 – 17,574,710	+	12	119	78.96	-1.36	0.76	0.868363
				3145	17,574,616 – 17,574,710	-	12	119	78.96	-2.73	0.75	0.997041
				3146	17,574,634 – 17,574,739	+	12	118	79.57	-1.94	0.69	0.967680
				3147	17,574,634 – 17,574,739	-	12	118	79.57	-2.86	0.63	0.996557
2281	dm3.chr2L	17,585,803 – 17,585,899	- - - - - - - -	3148	17,585,803 – 17,585,899	+	5	108	51.85	-1.65	0.25	0.699115
2282	dm3.chr2L	17,588,235 – 17,588,307	- - - - - - - -	3149	17,588,235 – 17,588,307	+	12	88	81.69	-2.32	0.57	0.938179
2282	dm3.chr2L	17,588,235 – 17,588,307	- - - - - - - -	3150	17,588,235 – 17,588,307	-	12	88	81.69	-2.09	0.69	0.963834
2283	dm3.chr2L	17,592,558 – 17,592,657	- - - intron="intron;ID=intron_FBgn0261089:1_FBgn0261089:4;Name=Sytalpha-in;Parent=FBtr0303254;parent_type=mRNA" - - - -	3151	17,592,558 – 17,592,657	+	6	101	74.25	-2.06	0.43	0.857998
2283	dm3.chr2L	17,592,558 – 17,592,657		3152	17,592,558 – 17,592,657	-	6	101	74.25	-1.51	0.48	0.638453
2284	dm3.chr2L	17,596,378 – 17,596,475	- - - intron="intron;ID=intron_FBgn0261089:3_FBgn0261089:4;Name=Sytalpha-in;Parent=FBtr0303255;parent_type=mRNA" - - - -	3153	17,596,378 – 17,596,475	+	5	100	88.01	-2.29	0.68	0.745215
2284	dm3.chr2L	17,596,378 – 17,596,475		3154	17,596,378 – 17,596,475	-	5	100	88.01	-1.75	0.74	0.500000
2285	dm3.chr2L	17,599,259 – 17,599,311	- - - intron="intron;ID=intron_FBgn0261089:3_FBgn0261089:4;Name=Sytalpha-in;Parent=FBtr0303255;parent_type=mRNA" - - - -	3155	17,599,259 – 17,599,311	+	6	53	78.77	-4.39	0.57	0.999752
2285	dm3.chr2L	17,599,259 – 17,599,311		3156	17,599,259 – 17,599,311	-	6	53	78.77	-5.26	0.61	0.999876
2286	dm3.chr2L	17,612,817 – 17,612,912	- - - - - - - -	3157	17,612,817 – 17,612,912	+	9	114	77.00	-2.19	0.39	0.561415
2287	dm3.chr2L	17,619,062 – 17,619,170	- - - - - - - -	3158	17,619,062 – 17,619,163	+	7	107	70.65	-2.27	0.42	0.974344
				3159	17,619,062 – 17,619,163	-	7	107	70.65	-2.54	0.42	0.989812
				3160	17,619,074 – 17,619,170	+	7	102	73.47	-1.82	0.41	0.687557
2288	dm3.chr2L	17,626,670 – 17,626,778	- - - - - - - -	3161	17,626,670 – 17,626,778	+	4	131	56.01	-2.56	0.14	0.500000
2289	dm3.chr2L	17,642,797 – 17,642,888	- - - - - - - -	3162	17,642,797 – 17,642,888	+	8	117	87.98	-2.44	0.66	0.804822
2290	dm3.chr2L	17,642,971 – 17,643,083	- - - - - - - -	3163	17,642,971 – 17,643,083	-	6	112	78.10	-1.91	0.59	0.925850
2291	dm3.chr2L	17,649,938 – 17,650,029	- - - - - - - -	3164	17,649,938 – 17,650,029	+	6	92	75.91	-1.81	0.45	0.634340
2292	dm3.chr2L	17,676,517 – 17,676,612	- - - intron="intron;ID=intron_CG7100:10_CG7100:11;Name=CadN-in;Parent=FBtr0081016,FBtr0081019,FBtr0081013,FBtr0081017,FBtr0081014,FBtr0081020,FBtr0081015,FBtr0081018,FBtr0100313,FBtr0100314,FBtr0100315,FBtr0100316;parent_type=mRNA" - - - -	3165	17,676,517 – 17,676,612	-	7	96	76.79	-1.40	0.66	0.792769
2293	dm3.chr2L	17,682,409 – 17,682,563	- - - intron="intron;ID=intron_CG7100:10_CG7100:11;Name=CadN-in;Parent=FBtr0081016,FBtr0081019,FBtr0081013,FBtr0081017,FBtr0081014,FBtr0081020,FBtr0081015,FBtr0081018,FBtr0100313,FBtr0100314,FBtr0100315,FBtr0100316;parent_type=mRNA" - - - -	3166	17,682,409 – 17,682,563	+	5	154	85.32	-2.11	0.66	0.752826
2294	dm3.chr2L	17,698,791 – 17,698,922	- - - intron="intron;ID=intron_CG7100:10_CG7100:11;Name=CadN-in;Parent=FBtr0081016,FBtr0081019,FBtr0081013,FBtr0081017,FBtr0081014,FBtr0081020,FBtr0081015,FBtr0081018,FBtr0100313,FBtr0100314,FBtr0100315,FBtr0100316;parent_type=mRNA" - - - -	3167	17,698,791 – 17,698,893	-	8	107	61.56	-0.51	0.47	0.797722
2294	dm3.chr2L	17,698,791 – 17,698,922		3168	17,698,829 – 17,698,922	-	9	120	69.99	-2.42	0.30	0.775047
2295	dm3.chr2L	17,700,406 – 17,700,463	- - - intron="intron;ID=intron_CG7100:10_CG7100:11;Name=CadN-in;Parent=FBtr0081016,FBtr0081019,FBtr0081013,FBtr0081017,FBtr0081014,FBtr0081020,FBtr0081015,FBtr0081018,FBtr0100313,FBtr0100314,FBtr0100315,FBtr0100316;parent_type=mRNA" - - - -	3169	17,700,406 – 17,700,463	-	9	60	74.36	-1.92	0.36	0.577873
2296	dm3.chr2L	17,714,399 – 17,714,499	- - CDS="CDS;ID=CDS_CG7100:28_711;Name=CadN-cds;Parent=FBtr0081019,FBtr0081017,FBtr0081015;parent_type=mRNA" - - - - -	3170	17,714,399 – 17,714,499	-	14	100	88.67	-2.33	0.57	0.628050
2297	dm3.chr2L	17,724,111 – 17,724,227	- - - intron="intron;ID=intron_CG7100:1_CG7100:2;Name=CadN-in;Parent=FBtr0081016,FBtr0081019,FBtr0081013,FBtr0081017,FBtr0081014,FBtr0081020,FBtr0081015,FBtr0081018,FBtr0100313,FBtr0100314,FBtr0100315,FBtr0100316;parent_type=mRNA" - - - -	3171	17,724,111 – 17,724,227	-	7	116	76.20	-2.68	0.49	0.982964
2298	dm3.chr2L	17,724,234 – 17,724,336	- - - intron="intron;ID=intron_CG7100:1_CG7100:2;Name=CadN-in;Parent=FBtr0081016,FBtr0081019,FBtr0081013,FBtr0081017,FBtr0081014,FBtr0081020,FBtr0081015,FBtr0081018,FBtr0100313,FBtr0100314,FBtr0100315,FBtr0100316;parent_type=mRNA" - - - -	3172	17,724,234 – 17,724,336	+	7	116	71.46	-1.49	0.45	0.619052
2299	dm3.chr2L	17,724,783 – 17,724,875	- - - intron="intron;ID=intron_CG7100:1_CG7100:2;Name=CadN-in;Parent=FBtr0081016,FBtr0081019,FBtr0081013,FBtr0081017,FBtr0081014,FBtr0081020,FBtr0081015,FBtr0081018,FBtr0100313,FBtr0100314,FBtr0100315,FBtr0100316;parent_type=mRNA" - - - -	3173	17,724,783 – 17,724,875	+	12	108	67.43	-1.90	0.39	0.959302
2300	dm3.chr2L	17,737,215 – 17,737,270	- - - intron="intron;ID=intron_CG7100:1_CG7100:2;Name=CadN-in;Parent=FBtr0081016,FBtr0081019,FBtr0081013,FBtr0081017,FBtr0081014,FBtr0081020,FBtr0081015,FBtr0081018,FBtr0100313,FBtr0100314,FBtr0100315,FBtr0100316;parent_type=mRNA" - - - -	3174	17,737,215 – 17,737,270	-	8	62	83.37	-1.11	0.90	0.806816
2301	dm3.chr2L	17,743,202 – 17,743,261	- - - - - - - -	3175	17,743,202 – 17,743,261	+	8	61	77.50	-1.80	0.49	0.650749
2302	dm3.chr2L	17,748,486 – 17,748,595	- - - - - - - -	3176	17,748,486 – 17,748,595	-	12	114	78.90	-1.63	0.56	0.804187
2303	dm3.chr2L	17,764,240 – 17,764,341	- - - - - - - -	3177	17,764,240 – 17,764,341	+	10	111	76.25	-1.32	0.50	0.597039
2304	dm3.chr2L	17,772,178 – 17,772,278	- - - - - - - -	3178	17,772,178 – 17,772,278	-	5	109	85.07	-2.07	0.64	0.586789
2305	dm3.chr2L	17,780,171 – 17,780,262	- - - - - - - -	3179	17,780,171 – 17,780,262	-	10	93	75.33	-1.85	0.51	0.969697
2306	dm3.chr2L	17,796,052 – 17,796,154	- - - intron="intron;ID=intron_FBgn0262011:5_FBgn0262011:4;Name=CadN2-in;Parent=FBtr0303836;parent_type=mRNA" - - - -	3180	17,796,052 – 17,796,154	-	6	120	62.14	-1.34	0.41	0.857304
2307	dm3.chr2L	17,829,920 – 17,830,011	- - - intron="intron;ID=intron_FBgn0262011:14_FBgn0262011:13;Name=CadN2-in;Parent=FBtr0303836;parent_type=mRNA" - - - -	3181	17,829,920 – 17,830,011	-	9	103	83.05	-2.09	0.52	0.643870
2308	dm3.chr2L	17,836,746 – 17,836,799	- - - intron="intron;ID=intron_FBgn0262011:14_FBgn0262011:13;Name=CadN2-in;Parent=FBtr0303836;parent_type=mRNA" - - - -	3182	17,836,746 – 17,836,799	-	6	53	78.84	-1.81	0.52	0.696640
2309	dm3.chr2L	17,858,301 – 17,858,459	- - - - - - - -	3183	17,858,301 – 17,858,353	-	4	52	85.58	-2.36	0.59	0.625968
				3184	17,858,353 – 17,858,459	+	3	106	94.34	-3.05	0.91	0.992317
				3185	17,858,353 – 17,858,459	-	3	106	94.34	-3.27	0.83	0.987286
2310	dm3.chr2L	17,870,213 – 17,870,324	- - - - - - - -	3186	17,870,213 – 17,870,324	-	5	113	79.62	-1.33	0.70	0.525101
2311	dm3.chr2L	17,876,023 – 17,876,131	- - - - - - - -	3187	17,876,023 – 17,876,131	-	6	112	80.13	-1.20	0.68	0.564904
2312	dm3.chr2L	17,877,102 – 17,877,186	- - - - - - - -	3188	17,877,102 – 17,877,186	-	4	87	85.06	-0.94	0.91	0.588708
2313	dm3.chr2L	17,877,516 – 17,877,622	- - - - - - - -	3189	17,877,516 – 17,877,622	-	10	110	93.61	-2.18	0.81	0.841500
2314	dm3.chr2L	17,879,703 – 17,879,802	- - - - - - - -	3190	17,879,703 – 17,879,802	-	5	111	57.72	-1.82	0.24	0.659961
2315	dm3.chr2L	17,884,349 – 17,884,428	- - - - - - - -	3191	17,884,349 – 17,884,428	+	4	79	93.88	-2.58	0.81	0.922672
2316	dm3.chr2L	17,888,608 – 17,888,728	- - - - - - - -	3192	17,888,608 – 17,888,728	+	11	137	82.10	-2.59	0.39	0.651267
2316	dm3.chr2L	17,888,608 – 17,888,728	- - - - - - - -	3193	17,888,608 – 17,888,728	-	11	137	82.10	-2.45	0.48	0.841026
2317	dm3.chr2L	17,892,057 – 17,892,163	- - - - - - - -	3194	17,892,057 – 17,892,163	-	11	118	78.76	-1.65	0.54	0.589960
2318	dm3.chr2L	17,894,377 – 17,894,477	- - - - - - - -	3195	17,894,377 – 17,894,477	+	9	109	74.17	-1.10	0.54	0.554140
2319	dm3.chr2L	17,896,287 – 17,896,347	- - - - - - - -	3196	17,896,287 – 17,896,347	+	7	63	68.48	-0.65	0.52	0.566617
2320	dm3.chr2L	17,909,945 – 17,910,060	- - - - - - - -	3197	17,909,945 – 17,910,060	+	6	119	72.22	-1.04	0.52	0.518775
2321	dm3.chr2L	17,911,127 – 17,911,237	- - - - - - - -	3198	17,911,127 – 17,911,237	-	3	113	59.70	-2.06	0.50	0.984982
2322	dm3.chr2L	17,919,736 – 17,919,828	- - - - - - - -	3199	17,919,736 – 17,919,828	-	6	93	80.04	-2.76	0.58	0.986673
2323	dm3.chr2L	17,933,878 – 17,933,929	- - - - - - - -	3200	17,933,878 – 17,933,929	+	6	51	87.32	-2.07	0.74	0.847763
2323	dm3.chr2L	17,933,878 – 17,933,929	- - - - - - - -	3201	17,933,878 – 17,933,929	-	6	51	87.32	-2.59	0.66	0.921669
2324	dm3.chr2L	17,940,959 – 17,941,064	- - - - - - - -	3202	17,940,959 – 17,941,064	+	7	108	87.27	-1.81	0.72	0.575925
2325	dm3.chr2L	17,945,584 – 17,945,677	- - - - - - - -	3203	17,945,584 – 17,945,677	-	11	112	73.13	-1.53	0.55	0.937268
2326	dm3.chr2L	17,961,666 – 17,961,786	- - - - - - - -	3204	17,961,666 – 17,961,786	+	6	121	74.90	-1.98	0.58	0.972213
2327	dm3.chr2L	17,972,379 – 17,972,499	- - CDS="CDS;ID=CDS_FBgn0032656:6_784;Name=CG5674-cds;Parent=FBtr0290267;parent_type=mRNA" - - - - -	3205	17,972,379 – 17,972,499	+	11	120	82.47	-2.12	0.52	0.735258
2327	dm3.chr2L	17,972,379 – 17,972,499		3206	17,972,379 – 17,972,499	-	11	120	82.47	-1.43	0.64	0.527261
2328	dm3.chr2L	17,985,660 – 17,985,752	- - - - - - - -	3207	17,985,660 – 17,985,752	-	6	121	71.21	-2.02	0.63	0.982210
2329	dm3.chr2L	18,001,269 – 18,001,361	- - - - - - - -	3208	18,001,269 – 18,001,361	+	9	100	67.40	-1.28	0.58	0.989672
2329	dm3.chr2L	18,001,269 – 18,001,361	- - - - - - - -	3209	18,001,269 – 18,001,361	-	9	100	67.40	-1.00	0.55	0.959179
2330	dm3.chr2L	18,018,736 – 18,018,790	- - - intron="intron;ID=intron_CG15151:1_CG15151:2;Name=rdo-in;Parent=FBtr0081029;parent_type=mRNA" - - - -	3210	18,018,736 – 18,018,790	-	3	54	92.59	-1.79	1.12	0.996250
2331	dm3.chr2L	18,022,506 – 18,022,661	- - - intron="intron;ID=intron_CG15151:1_CG15151:2;Name=rdo-in;Parent=FBtr0081029;parent_type=mRNA" - - - -	3211	18,022,506 – 18,022,661	+	6	157	73.56	-1.14	0.57	0.725798
2331	dm3.chr2L	18,022,506 – 18,022,661		3212	18,022,506 – 18,022,661	-	6	157	73.56	-1.46	0.51	0.781847
2332	dm3.chr2L	18,039,097 – 18,039,187	- - - intron="intron;ID=intron_CG15151:3_CG15151:4;Name=rdo-in;Parent=FBtr0081029;parent_type=mRNA" - - - -	3213	18,039,097 – 18,039,187	+	10	93	68.25	-1.48	0.32	0.546858
2333	dm3.chr2L	18,102,777 – 18,102,922	- - - - - - - -	3214	18,102,777 – 18,102,890	+	5	113	90.71	-1.68	0.87	0.782093
				3215	18,102,777 – 18,102,890	-	5	113	90.71	-2.36	0.84	0.947149
				3216	18,102,817 – 18,102,922	-	12	112	71.55	-1.36	0.46	0.814638
2334	dm3.chr2L	18,108,628 – 18,108,720	- - - - - - - -	3217	18,108,628 – 18,108,720	+	12	112	80.20	-1.05	0.72	0.524365
2335	dm3.chr2L	18,123,589 – 18,123,694	- - CDS="CDS;ID=CDS_FBgn0032666:4_754;Name=CG5758-cds;Parent=FBtr0081036,FBtr0081037,FBtr0081035;parent_type=mRNA" - - - - -	3218	18,123,589 – 18,123,694	+	7	109	66.46	-0.80	0.56	0.820719
2335	dm3.chr2L	18,123,589 – 18,123,694		3219	18,123,589 – 18,123,694	-	7	109	66.46	-1.56	0.36	0.655013
2336	dm3.chr2L	18,126,727 – 18,126,846	- - CDS="CDS;ID=CDS_FBgn0032666:5_754;Name=CG5758-cds;Parent=FBtr0081036,FBtr0081037,FBtr0081035;parent_type=mRNA" - - - - -	3220	18,126,727 – 18,126,846	+	13	147	84.22	-2.28	0.71	0.956198
2337	dm3.chr2L	18,133,376 – 18,133,494	- - CDS="CDS;ID=CDS_CG7210:4_719;Name=kel-cds;Parent=FBtr0081043;parent_type=mRNA" - - - - -	3221	18,133,376 – 18,133,481	-	10	105	72.16	-2.12	0.39	0.951824
2337	dm3.chr2L	18,133,376 – 18,133,494		3222	18,133,377 – 18,133,494	-	11	117	73.22	-1.98	0.34	0.795529
2338	dm3.chr2L	18,148,016 – 18,148,265	- - - intron="intron;ID=intron_CG15154:1_CG15154:2;Name=Socs36E-in;Parent=FBtr0081040,FBtr0081041;parent_type=mRNA" - - - -	3223	18,148,016 – 18,148,114	-	3	99	93.49	-3.01	0.80	0.969323
2338	dm3.chr2L	18,148,016 – 18,148,265		3224	18,148,114 – 18,148,265	-	6	157	71.37	-1.77	0.54	0.953446
2339	dm3.chr2L	18,160,584 – 18,160,689	- - - - - - - -	3225	18,160,584 – 18,160,689	-	8	117	67.24	-0.91	0.49	0.571616
2340	dm3.chr2L	18,161,111 – 18,161,209	- - - - - - - -	3226	18,161,111 – 18,161,209	+	10	106	65.85	-0.97	0.38	0.548397
2341	dm3.chr2L	18,168,385 – 18,168,478	- - - intron="intron;ID=intron_FBgn0261804:4_FBgn0261804:3;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3227	18,168,385 – 18,168,478	+	3	94	97.87	-1.88	1.00	0.963508
2341	dm3.chr2L	18,168,385 – 18,168,478		3228	18,168,385 – 18,168,478	-	3	94	97.87	-1.01	0.98	0.572045
2342	dm3.chr2L	18,175,487 – 18,175,544	- - - intron="intron;ID=intron_FBgn0261804:4_FBgn0261804:3;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3229	18,175,487 – 18,175,544	-	7	62	66.69	-1.28	0.40	0.565846
2343	dm3.chr2L	18,177,486 – 18,177,596	- - - intron="intron;ID=intron_FBgn0261804:4_FBgn0261804:3;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3230	18,177,486 – 18,177,596	+	10	113	71.83	-3.03	0.44	0.999218
2344	dm3.chr2L	18,189,323 – 18,189,418	- - - intron="intron;ID=intron_FBgn0261804:5_FBgn0261804:4;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3231	18,189,323 – 18,189,418	+	7	115	82.15	-1.49	0.75	0.734540
2345	dm3.chr2L	18,190,034 – 18,190,117	- - - intron="intron;ID=intron_FBgn0261804:5_FBgn0261804:4;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3232	18,190,034 – 18,190,117	-	6	87	77.15	-1.89	0.60	0.925835
2346	dm3.chr2L	18,192,371 – 18,192,484	- - - intron="intron;ID=intron_FBgn0261804:5_FBgn0261804:4;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3233	18,192,371 – 18,192,484	+	7	114	64.87	-1.64	0.34	0.893458
2347	dm3.chr2L	18,210,666 – 18,210,771	- - CDS="CDS;ID=CDS_FBgn0261804:11_835;Name=CG42750-cds;Parent=FBtr0303280;parent_type=mRNA" - - - - -	3234	18,210,666 – 18,210,771	+	9	111	78.03	-0.97	0.72	0.749994
2348	dm3.chr2L	18,214,149 – 18,214,249	- - - intron="intron;ID=intron_FBgn0261804:12_FBgn0261804:11;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3235	18,214,149 – 18,214,249	-	11	115	68.40	-1.94	0.36	0.878280
2349	dm3.chr2L	18,221,759 – 18,221,878	- - - intron="intron;ID=intron_FBgn0261804:13_FBgn0261804:12;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3236	18,221,759 – 18,221,878	-	7	119	59.74	-1.78	0.30	0.854114
2350	dm3.chr2L	18,232,210 – 18,232,311	- - - intron="intron;ID=intron_FBgn0261804:13_FBgn0261804:12;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3237	18,232,210 – 18,232,311	+	7	102	82.03	-2.50	0.66	0.985180
2350	dm3.chr2L	18,232,210 – 18,232,311		3238	18,232,210 – 18,232,311	-	7	102	82.03	-2.30	0.66	0.972230
2351	dm3.chr2L	18,233,497 – 18,233,600	- - - intron="intron;ID=intron_FBgn0261804:13_FBgn0261804:12;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3239	18,233,497 – 18,233,600	+	10	113	78.97	-1.77	0.49	0.557853
2351	dm3.chr2L	18,233,497 – 18,233,600		3240	18,233,497 – 18,233,600	-	10	113	78.97	-1.35	0.60	0.576368
2352	dm3.chr2L	18,233,690 – 18,233,852	- - - intron="intron;ID=intron_FBgn0261804:13_FBgn0261804:12;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3241	18,233,690 – 18,233,802	+	6	112	80.83	-2.42	0.67	0.983734
2352	dm3.chr2L	18,233,690 – 18,233,852		3242	18,233,762 – 18,233,852	+	6	108	66.16	-0.73	0.52	0.535421
2353	dm3.chr2L	18,239,555 – 18,239,647	- - - intron="intron;ID=intron_FBgn0261804:13_FBgn0261804:12;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3243	18,239,555 – 18,239,647	-	12	95	84.61	-1.92	0.60	0.712171
2354	dm3.chr2L	18,252,473 – 18,252,574	- - - intron="intron;ID=intron_FBgn0261804:14_FBgn0261804:13;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3244	18,252,473 – 18,252,574	+	8	104	76.34	-1.54	0.51	0.710225
2355	dm3.chr2L	18,255,201 – 18,255,353	- - - intron="intron;ID=intron_FBgn0261804:14_FBgn0261804:13;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3245	18,255,201 – 18,255,295	+	10	118	64.64	-1.99	0.30	0.847834
				3246	18,255,221 – 18,255,326	+	12	120	76.49	-1.86	0.55	0.926146
				3247	18,255,255 – 18,255,353	+	9	108	85.48	-2.94	0.69	0.990245
2356	dm3.chr2L	18,255,394 – 18,255,488	- - - intron="intron;ID=intron_FBgn0261804:14_FBgn0261804:13;Name=CG42750-in;Parent=FBtr0303280;parent_type=mRNA" - - - -	3248	18,255,394 – 18,255,488	-	11	95	81.30	-1.57	0.57	0.650477
2357	dm3.chr2L	18,294,553 – 18,294,649	- - - - - - - -	3249	18,294,553 – 18,294,649	+	5	100	65.42	-1.20	0.45	0.726534
2358	dm3.chr2L	18,299,356 – 18,299,418	- - - - - - - -	3250	18,299,356 – 18,299,418	-	3	62	84.95	-1.94	0.77	0.784049
2359	dm3.chr2L	18,319,450 – 18,319,570	- - - - - - - -	3251	18,319,450 – 18,319,570	+	5	120	84.42	-2.89	0.61	0.969173
2359	dm3.chr2L	18,319,450 – 18,319,570	- - - - - - - -	3252	18,319,450 – 18,319,570	-	5	120	84.42	-3.83	0.75	0.998865
2360	dm3.chr2L	18,320,925 – 18,321,016	- - - intron="intron;ID=intron_FBgn0000636:1_FBgn0000636:2;Name=Fas3-in;Parent=FBtr0081051,FBtr0081052,FBtr0112804,FBtr0112805,FBtr0301391;parent_type=mRNA" - - - -	3253	18,320,925 – 18,321,016	-	9	92	50.43	-2.18	-0.00	0.518995
2361	dm3.chr2L	18,340,775 – 18,340,873	- - - intron="intron;ID=intron_FBgn0000636:1_FBgn0000636:2;Name=Fas3-in;Parent=FBtr0081051,FBtr0081052,FBtr0112804,FBtr0112805,FBtr0301391;parent_type=mRNA" - - - -	3254	18,340,775 – 18,340,873	-	11	121	82.09	-2.55	0.53	0.900225
2362	dm3.chr2L	18,340,927 – 18,341,030	- - - intron="intron;ID=intron_FBgn0000636:1_FBgn0000636:2;Name=Fas3-in;Parent=FBtr0081051,FBtr0081052,FBtr0112804,FBtr0112805,FBtr0301391;parent_type=mRNA" - - - -	3255	18,340,927 – 18,341,030	+	6	108	66.58	-1.22	0.45	0.736464
2363	dm3.chr2L	18,352,516 – 18,352,606	- - - intron="intron;ID=intron_FBgn0000636:1_FBgn0000636:2;Name=Fas3-in;Parent=FBtr0081051,FBtr0081052,FBtr0112804,FBtr0112805,FBtr0301391;parent_type=mRNA" - - - -	3256	18,352,516 – 18,352,606	-	6	90	78.76	-0.55	0.97	0.759789
2364	dm3.chr2L	18,364,447 – 18,364,545	- - - - - - - -	3257	18,364,447 – 18,364,545	+	7	113	63.27	-1.59	0.29	0.507188
2364	dm3.chr2L	18,364,447 – 18,364,545	- - - - - - - -	3258	18,364,447 – 18,364,545	-	7	113	63.27	-1.58	0.30	0.561106
2365	dm3.chr2L	18,369,292 – 18,369,346	- - - - - - - -	3259	18,369,292 – 18,369,346	-	7	54	90.83	-2.29	0.86	0.963682
2366	dm3.chr2L	18,372,061 – 18,372,169	- - - - - - - -	3260	18,372,061 – 18,372,169	-	8	112	70.29	-1.44	0.36	0.535060
2367	dm3.chr2L	18,383,220 – 18,383,318	- - - - - - - -	3261	18,383,220 – 18,383,318	+	5	98	96.84	-1.79	0.87	0.639361
2368	dm3.chr2L	18,386,447 – 18,386,506	- - - - - - - -	3262	18,386,447 – 18,386,506	+	5	61	86.76	-2.27	0.75	0.893119
2368	dm3.chr2L	18,386,447 – 18,386,506	- - - - - - - -	3263	18,386,447 – 18,386,506	-	5	61	86.76	-2.26	0.82	0.951191
2369	dm3.chr2L	18,392,212 – 18,392,305	- - CDS="CDS;ID=CDS_FBgn0000636:12_858;Name=Fas3-cds;Parent=FBtr0081052;parent_type=mRNA" - - - - -	3264	18,392,212 – 18,392,305	+	11	108	74.22	-1.19	0.63	0.857936
2369	dm3.chr2L	18,392,212 – 18,392,305		3265	18,392,212 – 18,392,305	-	11	108	74.22	-0.74	0.64	0.553001
2370	dm3.chr2L	18,399,317 – 18,399,371	- - - - - - - -	3266	18,399,317 – 18,399,371	+	3	54	98.77	-3.04	1.00	0.996232
2370	dm3.chr2L	18,399,317 – 18,399,371	- - - - - - - -	3267	18,399,317 – 18,399,371	-	3	54	98.77	-2.80	1.00	0.994462
2371	dm3.chr2L	18,401,804 – 18,401,898	- - - - - - - -	3268	18,401,804 – 18,401,898	+	7	116	66.90	-1.54	0.44	0.829687
2371	dm3.chr2L	18,401,804 – 18,401,898	- - - - - - - -	3269	18,401,804 – 18,401,898	-	7	116	66.90	-1.21	0.48	0.741205
2372	dm3.chr2L	18,414,268 – 18,414,337	- - - - - - - -	3270	18,414,268 – 18,414,337	-	10	80	74.41	-1.17	0.62	0.845624
2373	dm3.chr2L	18,429,432 – 18,429,533	- - - - - - - -	3271	18,429,432 – 18,429,533	-	8	106	76.30	-1.31	0.57	0.711605
2374	dm3.chr2L	18,457,919 – 18,457,993	- - - - - - - -	3272	18,457,919 – 18,457,993	+	5	80	89.38	-1.37	0.89	0.716793
2375	dm3.chr2L	18,472,331 – 18,472,405	FBnoncoding="pre_miRNA;ID=FBtr0304491;Name=mir-125-RM;Parent=FBgn0262456;Alias=CR43029-RM;Dbxref=FlyBase_Annotation_IDs:CR43029-RM,miRBase:MI0000417" - - - "Rfam_10.0=RF00052;lin-4;AAPU01010514.1/89436-89504\|1.9e-32" "Noncode_2.0=n178698_u177796_NW_045819_miRNA_Anopheles\|9.4e-13" "unique_Noncode_2.0=u177796_miRNA_Anopheles\|8.2e-13" "mirBase_v16=dya-mir-125\|3.9e-37"	3273	18,472,331 – 18,472,405	+	14	78	93.23	-2.25	0.92	0.979274
2375	dm3.chr2L	18,472,331 – 18,472,405		3274	18,472,331 – 18,472,405	-	14	78	93.23	-3.41	0.94	0.998135
2376	dm3.chr2L	18,475,675 – 18,475,769	- - CDS="CDS;ID=CDS_FBgn0032681:7_880;Name=CG10283-cds;Parent=FBtr0300675,FBtr0300676;parent_type=mRNA" - - - - -	3275	18,475,675 – 18,475,769	+	10	115	63.19	-2.04	0.21	0.580570
2376	dm3.chr2L	18,475,675 – 18,475,769		3276	18,475,675 – 18,475,769	-	10	115	63.19	-1.97	0.24	0.700227
2377	dm3.chr2L	18,500,490 – 18,500,594	- - - intron="intron;ID=intron_FBgn0032683:11_FBgn0032683:10;Name=kon-in;Parent=FBtr0300341;parent_type=mRNA" - - - -	3277	18,500,490 – 18,500,594	-	12	119	86.39	-2.02	0.71	0.863400
2378	dm3.chr2L	18,528,989 – 18,529,102	- - - - - - - -	3278	18,528,989 – 18,529,102	+	13	117	65.89	-0.07	0.57	0.661266
2379	dm3.chr2L	18,531,394 – 18,531,494	- - CDS="CDS;ID=CDS_CG10211:9_734;Name=CG10211-cds;Parent=FBtr0081069;parent_type=mRNA" - - - - -	3279	18,531,394 – 18,531,494	+	15	115	65.40	-0.28	0.47	0.559056
2380	dm3.chr2L	18,539,805 – 18,539,922	- - - intron="intron;ID=intron_FBgn0085370:14_FBgn0085370:13;Name=Pde11-in;Parent=FBtr0112544,FBtr0112545,FBtr0303162,FBtr0303163;parent_type=mRNA" - - - -	3280	18,539,805 – 18,539,922	-	3	117	93.73	-2.37	0.91	0.965678
2381	dm3.chr2L	18,546,653 – 18,546,734	- - CDS="CDS;ID=CDS_FBgn0085370:18_835;Name=Pde11-cds;Parent=FBtr0303162;parent_type=mRNA" - - - - -	3281	18,546,653 – 18,546,734	-	9	81	90.12	-1.27	0.84	0.510604
2382	dm3.chr2L	18,565,139 – 18,565,200	- - - - - - - -	3282	18,565,139 – 18,565,200	-	5	61	87.54	-2.20	0.76	0.889664
2383	dm3.chr2L	18,589,231 – 18,589,324	- - - - - - - -	3283	18,589,231 – 18,589,324	+	6	107	67.65	-1.46	0.59	0.974999
2384	dm3.chr2L	18,589,448 – 18,589,542	- - - - - - - -	3284	18,589,448 – 18,589,542	-	9	111	73.88	-1.71	0.56	0.908121
2385	dm3.chr2L	18,606,796 – 18,606,849	- - - - - - - -	3285	18,606,796 – 18,606,849	-	4	57	56.36	-2.37	0.32	0.979757
2386	dm3.chr2L	18,610,599 – 18,610,689	- - CDS="CDS;ID=CDS_CG10414:4_734;Name=CG10414-cds;Parent=FBtr0081079;parent_type=mRNA" - - - - -	3286	18,610,599 – 18,610,689	-	12	117	63.65	-1.06	0.43	0.835708
2387	dm3.chr2L	18,648,865 – 18,649,007	- - - intron="intron;ID=intron_CG15162:2_CG15162:3;Name=MESR3-in;Parent=FBtr0081073;parent_type=mRNA" - - - -	3287	18,648,865 – 18,648,968	-	9	113	64.99	-1.77	0.29	0.797672
2387	dm3.chr2L	18,648,865 – 18,649,007		3288	18,648,900 – 18,649,007	-	9	117	64.91	-1.70	0.32	0.843476
2388	dm3.chr2L	18,662,972 – 18,663,062	- - - - - - - -	3289	18,662,972 – 18,663,062	+	3	90	87.31	-1.61	0.83	0.625378
2389	dm3.chr2L	18,663,698 – 18,663,818	- - - - - - - -	3290	18,663,698 – 18,663,818	-	11	137	74.18	-0.69	0.58	0.516072
2390	dm3.chr2L	18,666,040 – 18,666,130	- - - intron="intron;ID=intron_FBgn0086200:1_FBgn0086200:2;Name=CG42490-in;Parent=FBtr0306300;parent_type=mRNA" - - - -	3291	18,666,040 – 18,666,130	-	5	96	75.62	-1.16	0.80	0.865751
2391	dm3.chr2L	18,697,795 – 18,697,887	- - CDS="CDS;ID=CDS_CG10338:4_747;Name=CG10338-cds;Parent=FBtr0081096;parent_type=mRNA" - - - - -	3292	18,697,795 – 18,697,887	-	12	107	68.05	-1.68	0.43	0.954591
2392	dm3.chr2L	18,711,324 – 18,711,375	- - CDS="CDS;ID=CDS_FBgn0032706:1_772;Name=Irk3-cds;Parent=FBtr0081125,FBtr0114486;parent_type=mRNA" - - - - -	3293	18,711,324 – 18,711,375	+	3	51	88.89	-2.04	0.77	0.697955
2393	dm3.chr2L	18,713,953 – 18,714,020	- - - - - - - -	3294	18,713,953 – 18,714,020	+	5	71	82.40	-3.25	0.73	0.996896
2394	dm3.chr2L	18,719,320 – 18,719,430	- - - intron="intron;ID=intron_FBgn0032707:2_FBgn0032707:1;Name=CG10348-in;Parent=FBtr0301647;parent_type=mRNA" - - - -	3295	18,719,320 – 18,719,430	-	5	110	98.18	-0.86	1.01	0.642109
2395	dm3.chr2L	18,724,937 – 18,725,042	- - - intron="intron;ID=intron_FBgn0032707:2_FBgn0032707:1;Name=CG10348-in;Parent=FBtr0301647;parent_type=mRNA" - - - -	3296	18,724,937 – 18,725,042	+	5	134	68.88	-1.73	0.56	0.967050
2396	dm3.chr2L	18,728,373 – 18,728,484	- - - intron="intron;ID=intron_FBgn0032707:2_FBgn0032707:1;Name=CG10348-in;Parent=FBtr0301647;parent_type=mRNA" - - - -	3297	18,728,373 – 18,728,484	-	3	111	90.99	-1.75	0.84	0.647631
2397	dm3.chr2L	18,733,645 – 18,733,737	- - - - - - - -	3298	18,733,645 – 18,733,737	+	6	92	99.64	-1.25	1.01	0.835538
2398	dm3.chr2L	18,736,774 – 18,736,886	- - - - - - - -	3299	18,736,774 – 18,736,886	+	5	120	95.83	-2.11	0.89	0.895465
2399	dm3.chr2L	18,741,112 – 18,741,204	- - - - - - - -	3300	18,741,112 – 18,741,204	-	12	118	82.63	-1.09	0.80	0.644054
2400	dm3.chr2L	18,741,610 – 18,741,700	- - - - - - - -	3301	18,741,610 – 18,741,700	+	7	105	83.15	-2.34	0.65	0.932905
2400	dm3.chr2L	18,741,610 – 18,741,700	- - - - - - - -	3302	18,741,610 – 18,741,700	-	7	105	83.15	-3.65	0.70	0.998632
2401	dm3.chr2L	18,741,871 – 18,741,930	- - - - - - - -	3303	18,741,871 – 18,741,930	-	6	59	92.09	-1.66	0.87	0.774089
2402	dm3.chr2L	18,744,268 – 18,744,388	- - - - - - - -	3304	18,744,268 – 18,744,388	-	10	125	72.09	-1.20	0.47	0.731342
2403	dm3.chr2L	18,752,693 – 18,752,805	- - - - - - - -	3305	18,752,693 – 18,752,805	-	6	118	59.83	-1.16	0.34	0.578949
2404	dm3.chr2L	18,772,361 – 18,772,461	- - - intron="intron;ID=intron_FBgn0045852:5_FBgn0045852:4;Name=ham-in;Parent=FBtr0305620,FBtr0305621;parent_type=mRNA" - - - -	3306	18,772,361 – 18,772,461	-	6	114	75.77	-1.53	0.58	0.730700
2405	dm3.chr2L	18,774,737 – 18,774,859	- - - intron="intron;ID=intron_FBgn0045852:5_FBgn0045852:4;Name=ham-in;Parent=FBtr0305620,FBtr0305621;parent_type=mRNA" - - - -	3307	18,774,737 – 18,774,829	-	6	95	77.99	-1.69	0.53	0.626323
2405	dm3.chr2L	18,774,737 – 18,774,859		3308	18,774,765 – 18,774,859	-	7	94	72.19	-1.76	0.55	0.984817
2406	dm3.chr2L	18,789,369 – 18,789,429	- - - - - - - -	3309	18,789,369 – 18,789,429	+	5	60	85.74	-1.68	0.74	0.542783
2407	dm3.chr2L	18,801,846 – 18,801,936	- - - - - - - -	3310	18,801,846 – 18,801,936	-	9	113	69.33	-1.10	0.50	0.655722
2408	dm3.chr2L	18,805,670 – 18,805,731	- - - - - - - -	3311	18,805,670 – 18,805,731	-	8	61	79.58	-2.76	0.56	0.990469
2409	dm3.chr2L	18,817,989 – 18,818,081	- - - - - - - -	3312	18,817,989 – 18,818,081	+	12	112	70.62	-1.54	0.40	0.714092
2410	dm3.chr2L	18,838,947 – 18,839,039	- - CDS="CDS;ID=CDS_FBgn0032717:9_761;Name=CG10600-cds;Parent=FBtr0081120;parent_type=mRNA" - - - - -	3313	18,838,947 – 18,839,039	+	4	99	69.60	-1.27	0.59	0.740644
2411	dm3.chr2L	18,842,879 – 18,842,938	- - CDS="CDS;ID=CDS_CG33120:4_747;Name=CG33120-cds;Parent=FBtr0081118;parent_type=mRNA" - - - - -	3314	18,842,879 – 18,842,938	-	13	65	64.04	-0.95	0.41	0.842224
2412	dm3.chr2L	18,846,353 – 18,846,433	- - - intron="intron;ID=intron_CG17321:1_CG17321:2;Name=CG17321-in;Parent=FBtr0081110;parent_type=mRNA" - - - -	3315	18,846,353 – 18,846,433	-	6	82	70.45	-2.04	0.42	0.934779
2413	dm3.chr2L	18,850,744 – 18,850,850	- - - intron="intron;ID=intron_CG17321:1_CG17321:2;Name=CG17321-in;Parent=FBtr0081110;parent_type=mRNA" - - - -	3316	18,850,744 – 18,850,795	+	5	51	94.12	-0.97	1.02	0.839980
				3317	18,850,795 – 18,850,850	+	6	55	89.33	-2.66	0.76	0.967183
				3318	18,850,795 – 18,850,850	-	6	55	89.33	-1.56	0.81	0.616434
2414	dm3.chr2L	18,854,290 – 18,854,413	- - CDS="CDS;ID=CDS_CG17321:6_750;Name=CG17321-cds;Parent=FBtr0081110;parent_type=mRNA" - - - - -	3319	18,854,290 – 18,854,380	+	11	97	79.50	-2.00	0.72	0.981863
				3320	18,854,290 – 18,854,380	-	11	97	79.50	-1.78	0.50	0.627990
				3321	18,854,306 – 18,854,413	+	13	120	81.80	-1.85	0.68	0.927672
2415	dm3.chr2L	18,870,026 – 18,870,076	- - - intron="intron;ID=intron_CG10619:1_CG10619:2;Name=tup-in;Parent=FBtr0081111,FBtr0081112;parent_type=mRNA" - - - -	3322	18,870,026 – 18,870,076	+	7	57	83.23	-1.64	0.75	0.777482
2415	dm3.chr2L	18,870,026 – 18,870,076		3323	18,870,026 – 18,870,076	-	7	57	83.23	-1.63	0.97	0.973782
2416	dm3.chr2L	18,872,957 – 18,873,083	- - - intron="intron;ID=intron_CG10619:1_CG10619:2;Name=tup-in;Parent=FBtr0081111,FBtr0081112;parent_type=mRNA" - - - -	3324	18,872,957 – 18,873,058	+	8	119	76.59	-1.02	0.74	0.764928
2416	dm3.chr2L	18,872,957 – 18,873,083		3325	18,872,981 – 18,873,083	+	12	121	80.27	-1.00	0.73	0.617533
2417	dm3.chr2L	18,892,890 – 18,892,995	- - - - - - - -	3326	18,892,890 – 18,892,995	+	5	115	90.55	-2.29	0.72	0.716331
2418	dm3.chr2L	18,894,109 – 18,894,165	- - - - - - - -	3327	18,894,109 – 18,894,165	+	7	67	86.88	-1.17	0.97	0.887516
2419	dm3.chr2L	18,901,533 – 18,901,632	- - - - - - - -	3328	18,901,533 – 18,901,632	-	6	99	78.72	-1.45	0.65	0.771236
2420	dm3.chr2L	18,901,744 – 18,901,881	- - - - - - - -	3329	18,901,744 – 18,901,849	+	6	113	88.10	-2.27	0.66	0.760295
				3330	18,901,744 – 18,901,849	-	6	113	88.10	-2.31	0.63	0.704792
				3331	18,901,773 – 18,901,881	+	6	116	84.72	-2.05	0.75	0.924770
				3332	18,901,773 – 18,901,881	-	6	116	84.72	-1.79	0.68	0.661355
2421	dm3.chr2L	18,904,332 – 18,904,425	- - - - - - - -	3333	18,904,332 – 18,904,425	-	7	111	58.01	-0.63	0.39	0.506579
2422	dm3.chr2L	18,905,628 – 18,905,721	- - - - - - - -	3334	18,905,628 – 18,905,721	+	8	95	67.93	-0.88	0.58	0.807680
2423	dm3.chr2L	18,906,678 – 18,906,752	- - - - - - - -	3335	18,906,678 – 18,906,752	+	6	80	69.96	-1.10	0.59	0.853450
2424	dm3.chr2L	18,912,031 – 18,912,134	- - - - - - - -	3336	18,912,031 – 18,912,134	-	7	106	74.94	-1.81	0.59	0.915518
2425	dm3.chr2L	18,914,063 – 18,914,153	- - - - - - - -	3337	18,914,063 – 18,914,153	+	3	90	72.48	-1.63	0.58	0.519790
2426	dm3.chr2L	18,929,577 – 18,929,683	- - - intron="intron;ID=intron_CG18397:6_CG18397:7;Name=ssp3-in;Parent=FBtr0081193;parent_type=mRNA" - - - -	3338	18,929,577 – 18,929,683	-	10	113	80.04	-1.93	0.47	0.653118
2427	dm3.chr2L	18,929,996 – 18,930,124	- - - intron="intron;ID=intron_CG18397:6_CG18397:7;Name=ssp3-in;Parent=FBtr0081193;parent_type=mRNA" - - - -	3339	18,929,996 – 18,930,091	-	5	99	90.74	-1.78	0.83	0.719507
2427	dm3.chr2L	18,929,996 – 18,930,124		3340	18,930,031 – 18,930,124	-	7	102	88.28	-1.21	0.88	0.618105
2428	dm3.chr2L	18,943,271 – 18,943,341	- - CDS="CDS;ID=CDS_CG18397:1_754;Name=ssp3-cds;Parent=FBtr0081193;parent_type=mRNA" - - - - -	3341	18,943,271 – 18,943,341	+	3	70	92.38	-1.09	1.00	0.826030
2429	dm3.chr2L	18,948,023 – 18,948,084	- - - - - - - -	3342	18,948,023 – 18,948,084	+	6	62	72.85	-1.14	0.62	0.839389
2430	dm3.chr2L	18,955,313 – 18,955,379	- - - - - - - -	3343	18,955,313 – 18,955,379	+	3	66	88.83	-2.63	0.85	0.977739
2430	dm3.chr2L	18,955,313 – 18,955,379	- - - - - - - -	3344	18,955,313 – 18,955,379	-	3	66	88.83	-3.16	0.93	0.996916
2431	dm3.chr2L	19,009,424 – 19,009,489	- - - - - - - -	3345	19,009,424 – 19,009,489	-	3	66	85.35	-1.70	0.78	0.610845
2432	dm3.chr2L	19,014,429 – 19,014,532	- - - - - - - -	3346	19,014,429 – 19,014,532	+	10	112	77.25	-1.11	0.74	0.851223
2433	dm3.chr2L	19,016,688 – 19,016,783	- - - - - - - -	3347	19,016,688 – 19,016,783	-	4	95	95.26	-1.41	0.90	0.536324
2434	dm3.chr2L	19,021,420 – 19,021,533	- - - - - - - -	3348	19,021,420 – 19,021,516	+	8	114	77.41	-1.62	0.55	0.648939
2434	dm3.chr2L	19,021,420 – 19,021,533	- - - - - - - -	3349	19,021,442 – 19,021,533	+	8	114	79.68	-1.52	0.66	0.693489
2435	dm3.chr2L	19,026,007 – 19,026,107	- - - - - - - -	3350	19,026,007 – 19,026,107	+	5	100	97.00	-1.65	0.96	0.881716
2435	dm3.chr2L	19,026,007 – 19,026,107	- - - - - - - -	3351	19,026,007 – 19,026,107	-	5	100	97.00	-1.18	0.95	0.574744
2436	dm3.chr2L	19,030,167 – 19,030,260	- - CDS="CDS;ID=CDS_CG10446:3_708;Name=Side-cds;Parent=FBtr0081141;parent_type=mRNA" - - - - -	3352	19,030,167 – 19,030,260	+	8	93	76.67	-1.44	0.56	0.713233
2437	dm3.chr2L	19,048,262 – 19,048,359	- - - - - - - -	3353	19,048,262 – 19,048,359	+	12	113	65.85	-3.07	0.62	0.999927
2437	dm3.chr2L	19,048,262 – 19,048,359	- - - - - - - -	3354	19,048,262 – 19,048,359	-	12	113	65.85	-2.40	0.58	0.999659
2438	dm3.chr2L	19,053,485 – 19,053,592	- - CDS="CDS;ID=CDS_FBgn0261364:2_824;Name=Rpn3-cds;Parent=FBtr0302289;parent_type=mRNA" - - - - -	3355	19,053,485 – 19,053,592	-	13	120	82.64	-2.02	0.56	0.718927
2439	dm3.chr2L	19,070,224 – 19,070,329	- - - - - - - -	3356	19,070,224 – 19,070,329	+	8	116	67.91	-0.51	0.56	0.619699
2440	dm3.chr2L	19,084,722 – 19,084,848	- - - - - - - -	3357	19,084,722 – 19,084,813	-	6	119	73.01	-1.89	0.50	0.795609
				3358	19,084,758 – 19,084,848	+	6	118	77.59	-2.35	0.68	0.982896
				3359	19,084,758 – 19,084,848	-	6	118	77.59	-2.93	0.57	0.991362
2441	dm3.chr2L	19,089,236 – 19,089,329	- - - - - - - -	3360	19,089,236 – 19,089,329	+	9	97	91.81	-1.55	0.90	0.825164
2442	dm3.chr2L	19,089,401 – 19,089,492	- - - - - - - -	3361	19,089,401 – 19,089,492	+	11	111	82.28	-2.14	0.52	0.708580
2443	dm3.chr2L	19,100,049 – 19,100,146	- - - - - - - -	3362	19,100,049 – 19,100,146	+	7	113	64.03	-1.31	0.46	0.889457
2444	dm3.chr2L	19,103,639 – 19,103,736	- - - - - - - -	3363	19,103,639 – 19,103,736	+	10	99	81.03	-2.28	0.62	0.959874
2445	dm3.chr2L	19,122,142 – 19,122,245	- - - - - - - -	3364	19,122,142 – 19,122,245	+	8	114	53.09	-2.04	0.26	0.973827
2445	dm3.chr2L	19,122,142 – 19,122,245	- - - - - - - -	3365	19,122,142 – 19,122,245	-	8	114	53.09	-1.71	0.49	0.999067
2446	dm3.chr2L	19,135,467 – 19,135,550	- - - intron="intron;ID=intron_FBgn0010300:1_FBgn0010300:2;Name=brat-in;Parent=FBtr0081158,FBtr0304151;parent_type=mRNA" - - - -	3366	19,135,467 – 19,135,550	-	6	90	78.67	-1.82	0.53	0.593436
2447	dm3.chr2L	19,140,228 – 19,140,339	- - - intron="intron;ID=intron_FBgn0010300:1_FBgn0010300:2;Name=brat-in;Parent=FBtr0081158,FBtr0304151;parent_type=mRNA" - - - -	3367	19,140,228 – 19,140,339	+	4	112	91.63	-1.21	0.91	0.561486
2448	dm3.chr2L	19,143,153 – 19,143,263	- - - intron="intron;ID=intron_FBgn0010300:1_FBgn0010300:2;Name=brat-in;Parent=FBtr0081158,FBtr0304151;parent_type=mRNA" - - - -	3368	19,143,153 – 19,143,263	+	8	115	65.74	-0.68	0.46	0.545232
2448	dm3.chr2L	19,143,153 – 19,143,263		3369	19,143,153 – 19,143,263	-	8	115	65.74	-1.15	0.37	0.524009
2449	dm3.chr2L	19,156,539 – 19,156,698	- - - intron="intron;ID=intron_FBgn0010300:2_FBgn0010300:4;Name=brat-in;Parent=FBtr0081158,FBtr0304151;parent_type=mRNA" - - - -	3370	19,156,539 – 19,156,658	+	3	119	78.29	-1.87	0.74	0.864465
2449	dm3.chr2L	19,156,539 – 19,156,698		3371	19,156,579 – 19,156,698	+	3	120	88.06	-1.90	0.79	0.689876
2450	dm3.chr2L	19,157,325 – 19,157,419	- - - intron="intron;ID=intron_FBgn0010300:2_FBgn0010300:4;Name=brat-in;Parent=FBtr0081158,FBtr0304151;parent_type=mRNA" - - - -	3372	19,157,325 – 19,157,419	+	6	112	65.89	-1.35	0.39	0.542298
2451	dm3.chr2L	19,157,900 – 19,157,996	- - - intron="intron;ID=intron_FBgn0010300:2_FBgn0010300:4;Name=brat-in;Parent=FBtr0081158,FBtr0304151;parent_type=mRNA" - - - -	3373	19,157,900 – 19,157,996	-	6	115	78.73	-1.80	0.66	0.867896
2452	dm3.chr2L	19,196,679 – 19,196,770	- - - intron="intron;ID=intron_CG17348:1_CG17348:2;Name=drl-in;Parent=FBtr0081195;parent_type=mRNA" - - - -	3374	19,196,679 – 19,196,770	+	7	105	62.27	-0.79	0.47	0.770329
2452	dm3.chr2L	19,196,679 – 19,196,770		3375	19,196,679 – 19,196,770	-	7	105	62.27	-1.09	0.49	0.939982
2453	dm3.chr2L	19,200,162 – 19,200,255	- - - intron="intron;ID=intron_CG17348:1_CG17348:2;Name=drl-in;Parent=FBtr0081195;parent_type=mRNA" - - - -	3376	19,200,162 – 19,200,255	+	5	93	92.19	-1.89	0.78	0.513196
2454	dm3.chr2L	19,207,766 – 19,207,860	- - - - - - - -	3377	19,207,766 – 19,207,860	+	12	119	77.86	-1.44	0.56	0.542377
2455	dm3.chr2L	19,209,779 – 19,209,873	- - - - - - - -	3378	19,209,779 – 19,209,873	+	5	95	92.15	-2.28	0.84	0.925603
2456	dm3.chr2L	19,223,051 – 19,223,150	- - - - - - - -	3379	19,223,051 – 19,223,150	+	10	111	75.70	-1.26	0.51	0.505913
2457	dm3.chr2L	19,231,176 – 19,231,276	- - - - - - - -	3380	19,231,176 – 19,231,276	+	10	105	63.96	-1.34	0.36	0.821192
2458	dm3.chr2L	19,233,799 – 19,233,895	- - - - - - - -	3381	19,233,799 – 19,233,895	-	11	110	75.33	-2.27	0.54	0.990338
2459	dm3.chr2L	19,234,910 – 19,235,000	- - - - - - - -	3382	19,234,910 – 19,235,000	-	6	102	64.04	-1.36	0.53	0.978136
2460	dm3.chr2L	19,241,678 – 19,241,782	- - - - - - - -	3383	19,241,678 – 19,241,782	+	11	105	86.75	-1.57	0.81	0.842425
2461	dm3.chr2L	19,248,984 – 19,249,076	- - - - - - - -	3384	19,248,984 – 19,249,076	+	9	104	59.96	-1.22	0.32	0.702407
2462	dm3.chr2L	19,252,465 – 19,252,567	- - - - - - - -	3385	19,252,465 – 19,252,567	+	5	120	74.18	-2.63	0.53	0.984485
2462	dm3.chr2L	19,252,465 – 19,252,567	- - - - - - - -	3386	19,252,465 – 19,252,567	-	5	120	74.18	-1.96	0.54	0.874928
2463	dm3.chr2L	19,265,164 – 19,265,252	- - - - - - - -	3387	19,265,164 – 19,265,252	+	6	88	64.55	-2.36	0.33	0.983789
2464	dm3.chr2L	19,265,610 – 19,265,709	- - - - - - - -	3388	19,265,610 – 19,265,709	-	8	107	77.85	-0.94	0.73	0.637887
2465	dm3.chr2L	19,270,844 – 19,270,975	- - - - - - - -	3389	19,270,844 – 19,270,944	+	5	117	58.15	-1.32	0.38	0.878697
2465	dm3.chr2L	19,270,844 – 19,270,975	- - - - - - - -	3390	19,270,875 – 19,270,975	+	4	112	60.66	-2.20	0.39	0.978982
2466	dm3.chr2L	19,271,076 – 19,271,175	- - - - - - - -	3391	19,271,076 – 19,271,175	+	10	110	82.68	-2.38	0.68	0.972538
2467	dm3.chr2L	19,274,644 – 19,274,744	- - - - - - - -	3392	19,274,644 – 19,274,744	+	10	116	69.31	-1.62	0.36	0.670396
2468	dm3.chr2L	19,275,488 – 19,275,580	- - - - - - - -	3393	19,275,488 – 19,275,580	+	7	96	73.53	-1.26	0.61	0.774449
2469	dm3.chr2L	19,276,594 – 19,276,714	- - - - - - - -	3394	19,276,594 – 19,276,692	+	10	99	76.07	-1.55	0.44	0.509200
2469	dm3.chr2L	19,276,594 – 19,276,714	- - - - - - - -	3395	19,276,616 – 19,276,714	+	3	98	98.64	-1.49	0.97	0.812664
2470	dm3.chr2L	19,277,704 – 19,277,808	- - - - - - - -	3396	19,277,704 – 19,277,808	+	12	116	84.41	-2.08	0.65	0.874631
2471	dm3.chr2L	19,279,006 – 19,279,114	- - - - - - - -	3397	19,279,006 – 19,279,114	-	7	116	74.04	-0.64	0.65	0.505853
2472	dm3.chr2L	19,280,187 – 19,280,283	- - - - - - - -	3398	19,280,187 – 19,280,283	+	6	96	84.92	-1.60	0.79	0.776967
2473	dm3.chr2L	19,280,475 – 19,280,568	- - - - - - - -	3399	19,280,475 – 19,280,568	+	7	94	84.71	-2.25	0.60	0.744240
2474	dm3.chr2L	19,284,958 – 19,285,010	- - - - - - - -	3400	19,284,958 – 19,285,010	-	3	57	63.74	-2.06	0.42	0.837519
2475	dm3.chr2L	19,307,862 – 19,307,958	- - - - - - - -	3401	19,307,862 – 19,307,958	-	4	97	79.72	-1.78	0.74	0.871485
2476	dm3.chr2L	19,308,608 – 19,308,658	- - - - - - - -	3402	19,308,608 – 19,308,658	-	4	50	92.00	-2.97	0.83	0.984852
2477	dm3.chr2L	19,314,504 – 19,314,583	- - - - - - - -	3403	19,314,504 – 19,314,583	+	9	90	81.00	-1.33	0.65	0.592403
2478	dm3.chr2L	19,322,550 – 19,322,688	- - - - - - - -	3404	19,322,550 – 19,322,652	-	3	102	92.16	-1.12	1.00	0.841409
2478	dm3.chr2L	19,322,550 – 19,322,688	- - - - - - - -	3405	19,322,572 – 19,322,688	-	6	116	74.80	-1.53	0.63	0.916453
2479	dm3.chr2L	19,331,449 – 19,331,542	- - - - - - - -	3406	19,331,449 – 19,331,542	-	6	103	79.04	-1.36	0.70	0.676992
2480	dm3.chr2L	19,342,334 – 19,342,386	- - - intron="intron;ID=intron_CG17559:1_CG17559:2;Name=dnt-in;Parent=FBtr0081224;parent_type=mRNA" - - - -	3407	19,342,334 – 19,342,386	+	8	59	77.07	-1.80	0.54	0.753544
2481	dm3.chr2L	19,343,527 – 19,343,649	- - - intron="intron;ID=intron_CG17559:1_CG17559:2;Name=dnt-in;Parent=FBtr0081224;parent_type=mRNA" - - - -	3408	19,343,527 – 19,343,649	+	6	140	72.14	-1.28	0.56	0.723943
2482	dm3.chr2L	19,383,826 – 19,383,933	- - - - - - - -	3409	19,383,826 – 19,383,933	+	6	118	67.94	-0.78	0.65	0.853272
2483	dm3.chr2L	19,385,142 – 19,385,250	- - CDS="CDS;ID=CDS_FBgn0032773:3_794;Name=fon-cds;Parent=FBtr0081222,FBtr0081223,FBtr0301287;parent_type=mRNA" - - - - -	3410	19,385,142 – 19,385,250	-	8	117	72.61	-1.34	0.51	0.732041
2484	dm3.chr2L	19,396,622 – 19,396,736	- - - - - - - -	3411	19,396,622 – 19,396,736	+	6	121	68.33	-1.64	0.35	0.578827
2484	dm3.chr2L	19,396,622 – 19,396,736	- - - - - - - -	3412	19,396,622 – 19,396,736	-	6	121	68.33	-1.70	0.34	0.580076
2485	dm3.chr2L	19,397,041 – 19,397,151	- - - - - - - -	3413	19,397,041 – 19,397,151	+	6	117	66.47	-2.23	0.32	0.921027
2486	dm3.chr2L	19,397,825 – 19,397,919	- - - - - - - -	3414	19,397,825 – 19,397,919	+	3	94	97.16	-1.83	0.93	0.855590
2486	dm3.chr2L	19,397,825 – 19,397,919	- - - - - - - -	3415	19,397,825 – 19,397,919	-	3	94	97.16	-1.32	0.97	0.752965
2487	dm3.chr2L	19,412,909 – 19,413,003	- - - intron="intron;ID=intron_CG31794:1_CG31794:2;Name=Pax-in;Parent=FBtr0081213;parent_type=mRNA" - - - -	3416	19,412,909 – 19,413,003	+	4	95	74.42	-2.53	0.58	0.982547
2487	dm3.chr2L	19,412,909 – 19,413,003		3417	19,412,909 – 19,413,003	-	4	95	74.42	-2.13	0.53	0.878711
2488	dm3.chr2L	19,441,389 – 19,441,449	- - - - - - - -	3418	19,441,389 – 19,441,449	+	9	64	68.95	-1.17	0.41	0.551637
2489	dm3.chr2L	19,452,129 – 19,452,261	- - CDS="CDS;ID=CDS_CG10223:2_705;Name=Top2-cds;Parent=FBtr0081287;parent_type=mRNA" - - - - -	3419	19,452,129 – 19,452,249	-	15	120	76.57	-2.12	0.39	0.870428
2489	dm3.chr2L	19,452,129 – 19,452,261		3420	19,452,141 – 19,452,261	-	15	120	78.28	-2.32	0.45	0.951708
2490	dm3.chr2L	19,465,166 – 19,465,290	- - CDS="CDS;ID=CDS_FBgn0000964:1_802;Name=tj-cds;Parent=FBtr0301669;parent_type=mRNA" - - - - -	3421	19,465,166 – 19,465,256	+	12	111	70.12	-1.98	0.38	0.923815
				3422	19,465,166 – 19,465,256	-	12	111	70.12	-1.74	0.55	0.989599
				3423	19,465,182 – 19,465,290	+	11	120	73.33	-1.55	0.44	0.667340
2491	dm3.chr2L	19,469,487 – 19,469,589	- - - - - - - -	3424	19,469,487 – 19,469,589	-	8	105	84.40	-2.85	0.69	0.990236
2492	dm3.chr2L	19,472,032 – 19,472,157	- - - - - - - -	3425	19,472,032 – 19,472,123	-	9	120	75.82	-2.59	0.55	0.985598
2492	dm3.chr2L	19,472,032 – 19,472,157	- - - - - - - -	3426	19,472,065 – 19,472,157	-	8	103	65.66	-1.39	0.46	0.934586
2493	dm3.chr2L	19,475,404 – 19,475,496	- - - - - - - -	3427	19,475,404 – 19,475,496	-	11	100	81.89	-2.39	0.43	0.689832
2494	dm3.chr2L	19,477,800 – 19,477,947	- - - - - - - -	3428	19,477,800 – 19,477,918	+	12	119	83.72	-1.92	0.69	0.890652
				3429	19,477,800 – 19,477,918	-	12	119	83.72	-1.90	0.72	0.914715
				3430	19,477,839 – 19,477,947	+	12	115	74.69	-1.89	0.45	0.860069
				3431	19,477,839 – 19,477,947	-	12	115	74.69	-1.76	0.57	0.960299
2495	dm3.chr2L	19,480,876 – 19,481,006	- - - - - - - -	3432	19,480,876 – 19,480,976	+	12	110	79.15	-2.30	0.47	0.914776
2495	dm3.chr2L	19,480,876 – 19,481,006	- - - - - - - -	3433	19,480,902 – 19,481,006	+	8	104	80.03	-1.47	0.59	0.540620
2496	dm3.chr2L	19,496,182 – 19,496,273	- - CDS="CDS;ID=CDS_CG10084:4_734;Name=swm-cds;Parent=FBtr0081244,FBtr0081245;parent_type=mRNA" - - - - -	3434	19,496,182 – 19,496,273	+	8	94	70.12	-1.61	0.37	0.689469
2497	dm3.chr2L	19,516,374 – 19,516,520	- - CDS="CDS;ID=CDS_FBgn0032797:20_780;Name=CG10186-cds;Parent=FBtr0299519;parent_type=mRNA" - - - - -	3435	19,516,374 – 19,516,485	-	10	114	62.85	-0.46	0.53	0.897874
2497	dm3.chr2L	19,516,374 – 19,516,520		3436	19,516,414 – 19,516,520	-	10	115	70.08	-0.53	0.58	0.758700
2498	dm3.chr2L	19,517,552 – 19,517,706	- - - - - - - -	3437	19,517,552 – 19,517,706	+	4	162	64.89	-2.20	0.40	0.953381
2498	dm3.chr2L	19,517,552 – 19,517,706	- - - - - - - -	3438	19,517,552 – 19,517,706	-	4	162	64.89	-2.11	0.28	0.500000
2499	dm3.chr2L	19,523,182 – 19,523,275	- - CDS="CDS;ID=CDS_CG10132:6_719;Name=CG10132-cds;Parent=FBtr0081247;parent_type=mRNA" - - - - -	3439	19,523,182 – 19,523,275	+	13	120	81.97	-1.31	0.71	0.572937
2500	dm3.chr2L	19,533,069 – 19,533,168	- - - - - - - -	3440	19,533,069 – 19,533,168	+	6	104	71.12	-1.00	0.53	0.604263
2500	dm3.chr2L	19,533,069 – 19,533,168	- - - - - - - -	3441	19,533,069 – 19,533,168	-	6	104	71.12	-0.66	0.64	0.659038
2501	dm3.chr2L	19,549,764 – 19,549,863	- - - - - - - -	3442	19,549,764 – 19,549,863	+	9	112	51.11	-0.64	0.54	0.984835
2502	dm3.chr2L	19,558,457 – 19,558,601	- - - intron="intron;ID=intron_CG13079:1_CG13079:2;Name=CG13079-in;Parent=FBtr0081255;parent_type=mRNA" - - - -	3443	19,558,457 – 19,558,601	+	5	151	84.19	-2.36	0.80	0.978132
2502	dm3.chr2L	19,558,457 – 19,558,601		3444	19,558,457 – 19,558,601	-	5	151	84.19	-2.18	0.67	0.853184
2503	dm3.chr2L	19,569,495 – 19,569,553	FBnoncoding="pre_miRNA;ID=FBtr0304504;Name=mir-2a-2-RM;Parent=FBgn0262460;Alias=CR43035-RM;Dbxref=FlyBase_Annotation_IDs:CR43035-RM,miRBase:MI0000118" - - intron="intron;ID=intron_FBgn0005672:2_FBgn0005672:1;Name=spi-in;Parent=FBtr0081269,FBtr0081268,FBtr0100597;parent_type=mRNA" "Rfam_10.0=RF00047;mir-2;AANI01013749.1/161816-161880\|1.3e-23" - - "mirBase_v16=dya-mir-2a-2\|1.0e-27"	3445	19,569,495 – 19,569,553	+	14	62	93.58	-4.47	0.99	0.999091
2503	dm3.chr2L	19,569,495 – 19,569,553		3446	19,569,495 – 19,569,553	-	14	62	93.58	-6.02	0.98	0.997456
2504	dm3.chr2L	19,572,771 – 19,572,842	- - - - - - - -	3447	19,572,771 – 19,572,842	+	4	74	80.46	-1.43	0.77	0.699921
2504	dm3.chr2L	19,572,771 – 19,572,842	- - - - - - - -	3448	19,572,771 – 19,572,842	-	4	74	80.46	-1.88	0.84	0.957208
2505	dm3.chr2L	19,573,774 – 19,573,864	- - - - - - - -	3449	19,573,774 – 19,573,864	+	5	90	73.67	-3.14	0.63	0.999352
2505	dm3.chr2L	19,573,774 – 19,573,864	- - - - - - - -	3450	19,573,774 – 19,573,864	-	5	90	73.67	-2.42	0.57	0.993133
2506	dm3.chr2L	19,594,529 – 19,594,630	- - - - - - - -	3451	19,594,529 – 19,594,630	+	10	117	73.46	-0.95	0.71	0.881729
2507	dm3.chr2L	19,612,746 – 19,612,840	- - - intron="intron;ID=intron_FBgn0000464:5_FBgn0000464:6;Name=Lar-in;Parent=FBtr0305950;parent_type=mRNA" - - - -	3452	19,612,746 – 19,612,840	+	11	102	82.38	-1.80	0.76	0.949311
2507	dm3.chr2L	19,612,746 – 19,612,840		3453	19,612,746 – 19,612,840	-	11	102	82.38	-1.29	0.68	0.565147
2508	dm3.chr2L	19,625,521 – 19,625,614	- - - intron="intron;ID=intron_FBgn0000464:5_FBgn0000464:6;Name=Lar-in;Parent=FBtr0305950;parent_type=mRNA" - - - -	3454	19,625,521 – 19,625,614	+	3	108	76.64	-2.54	0.58	0.931184
2509	dm3.chr2L	19,631,464 – 19,631,558	- - - intron="intron;ID=intron_FBgn0000464:5_FBgn0000464:6;Name=Lar-in;Parent=FBtr0305950;parent_type=mRNA" - - - -	3455	19,631,464 – 19,631,558	-	11	97	92.56	-1.91	0.92	0.945922
2510	dm3.chr2L	19,638,072 – 19,638,165	- - - intron="intron;ID=intron_FBgn0000464:5_FBgn0000464:6;Name=Lar-in;Parent=FBtr0305950;parent_type=mRNA" - - - -	3456	19,638,072 – 19,638,165	+	7	94	80.36	-1.41	0.70	0.784406
2511	dm3.chr2L	19,646,297 – 19,646,373	- - - intron="intron;ID=intron_FBgn0000464:8_FBgn0000464:9;Name=Lar-in;Parent=FBtr0081260,FBtr0112800,FBtr0305949,FBtr0305950,FBtr0305951;parent_type=mRNA" - - - -	3457	19,646,297 – 19,646,373	+	5	76	90.31	-2.21	0.74	0.755157
2512	dm3.chr2L	19,648,265 – 19,648,330	- - - intron="intron;ID=intron_FBgn0000464:8_FBgn0000464:9;Name=Lar-in;Parent=FBtr0081260,FBtr0112800,FBtr0305949,FBtr0305950,FBtr0305951;parent_type=mRNA" - - - -	3458	19,648,265 – 19,648,330	+	3	65	93.85	-1.58	0.99	0.935239
2513	dm3.chr2L	19,650,110 – 19,650,203	- - - intron="intron;ID=intron_FBgn0000464:8_FBgn0000464:9;Name=Lar-in;Parent=FBtr0081260,FBtr0112800,FBtr0305949,FBtr0305950,FBtr0305951;parent_type=mRNA" - - - -	3459	19,650,110 – 19,650,203	-	5	109	67.77	-1.64	0.57	0.956440
2514	dm3.chr2L	19,681,457 – 19,681,561	- - - intron="intron;ID=intron_FBgn0000464:8_FBgn0000464:9;Name=Lar-in;Parent=FBtr0081260,FBtr0112800,FBtr0305949,FBtr0305950,FBtr0305951;parent_type=mRNA" - - - -	3460	19,681,457 – 19,681,561	-	9	106	73.30	-1.00	0.52	0.599725
2515	dm3.chr2L	19,682,048 – 19,682,153	- - - intron="intron;ID=intron_FBgn0000464:8_FBgn0000464:9;Name=Lar-in;Parent=FBtr0081260,FBtr0112800,FBtr0305949,FBtr0305950,FBtr0305951;parent_type=mRNA" - - - -	3461	19,682,048 – 19,682,153	+	4	113	92.35	-1.76	0.84	0.639629
2516	dm3.chr2L	19,684,135 – 19,684,234	- - - intron="intron;ID=intron_FBgn0000464:8_FBgn0000464:9;Name=Lar-in;Parent=FBtr0081260,FBtr0112800,FBtr0305949,FBtr0305950,FBtr0305951;parent_type=mRNA" - - - -	3462	19,684,135 – 19,684,234	+	11	111	73.89	-1.23	0.56	0.838223
2516	dm3.chr2L	19,684,135 – 19,684,234		3463	19,684,135 – 19,684,234	-	11	111	73.89	-1.33	0.56	0.883290
2517	dm3.chr2L	19,688,450 – 19,688,544	- - - intron="intron;ID=intron_FBgn0000464:8_FBgn0000464:9;Name=Lar-in;Parent=FBtr0081260,FBtr0112800,FBtr0305949,FBtr0305950,FBtr0305951;parent_type=mRNA" - - - -	3464	19,688,450 – 19,688,544	+	5	94	81.17	-1.20	0.73	0.513095
2518	dm3.chr2L	19,690,501 – 19,690,597	- - - intron="intron;ID=intron_FBgn0000464:8_FBgn0000464:9;Name=Lar-in;Parent=FBtr0081260,FBtr0112800,FBtr0305949,FBtr0305950,FBtr0305951;parent_type=mRNA" - - - -	3465	19,690,501 – 19,690,597	-	5	108	62.77	-1.81	0.32	0.510222
2519	dm3.chr2L	19,692,992 – 19,693,088	- - - intron="intron;ID=intron_FBgn0000464:9_FBgn0000464:10;Name=Lar-in;Parent=FBtr0081260,FBtr0112800,FBtr0305949,FBtr0305950,FBtr0305951;parent_type=mRNA" - - - -	3466	19,692,992 – 19,693,088	-	3	97	68.62	-1.62	0.75	0.965083
2520	dm3.chr2L	19,698,958 – 19,699,051	- - - intron="intron;ID=intron_FBgn0000464:9_FBgn0000464:10;Name=Lar-in;Parent=FBtr0081260,FBtr0112800,FBtr0305949,FBtr0305950,FBtr0305951;parent_type=mRNA" - - - -	3467	19,698,958 – 19,699,051	+	5	93	88.30	-1.52	0.89	0.811764
2520	dm3.chr2L	19,698,958 – 19,699,051		3468	19,698,958 – 19,699,051	-	5	93	88.30	-1.98	0.73	0.610098
2521	dm3.chr2L	19,702,556 – 19,702,640	- - - intron="intron;ID=intron_FBgn0000464:13_FBgn0000464:14;Name=Lar-in;Parent=FBtr0305949,FBtr0305951;parent_type=mRNA" - - - -	3469	19,702,556 – 19,702,640	-	7	91	73.75	-0.80	0.66	0.556954
2522	dm3.chr2L	19,717,048 – 19,717,235	- - CDS="CDS;ID=CDS_FBgn0000464:16_814;Name=Lar-cds;Parent=FBtr0081260;parent_type=mRNA" - - - - -	3470	19,717,048 – 19,717,235	+	15	188	75.96	-1.32	0.52	0.869022
2523	dm3.chr2L	19,756,919 – 19,757,009	- - - - - - - -	3471	19,756,919 – 19,757,009	+	8	102	52.88	-1.65	0.19	0.577584
2524	dm3.chr2L	19,761,351 – 19,761,473	- - - - - "Noncode_2.0=n5380_u4721_X04243_snRNA_Drosophila\|6.6e-09" "unique_Noncode_2.0=u4721_snRNA_Drosophila\|5.7e-09" -	3472	19,761,351 – 19,761,473	+	12	146	87.39	-2.49	0.66	0.943594
2524	dm3.chr2L	19,761,351 – 19,761,473		3473	19,761,351 – 19,761,473	-	12	146	87.39	-2.12	0.62	0.732782
2525	dm3.chr2L	19,769,036 – 19,769,129	- - - - - - - -	3474	19,769,036 – 19,769,129	-	12	112	85.89	-1.50	0.79	0.758789
2526	dm3.chr2L	19,769,813 – 19,769,905	- - - - - - - -	3475	19,769,813 – 19,769,905	+	11	98	54.37	-0.82	0.31	0.529922
2527	dm3.chr2L	19,770,056 – 19,770,186	- - - - - - - -	3476	19,770,056 – 19,770,186	+	11	141	87.07	-1.19	0.83	0.587812
2527	dm3.chr2L	19,770,056 – 19,770,186	- - - - - - - -	3477	19,770,056 – 19,770,186	-	11	141	87.07	-1.36	0.82	0.693488
2528	dm3.chr2L	19,772,452 – 19,772,543	- - - - - - - -	3478	19,772,452 – 19,772,543	+	10	101	75.36	-1.54	0.55	0.863262
2529	dm3.chr2L	19,796,211 – 19,796,280	- - - - - - - -	3479	19,796,211 – 19,796,280	-	6	69	80.41	-2.66	0.78	0.996123
2530	dm3.chr2L	19,799,507 – 19,799,611	- - - - - - - -	3480	19,799,507 – 19,799,611	-	6	104	86.25	-1.92	0.79	0.874292
2531	dm3.chr2L	19,810,730 – 19,810,905	FBnoncoding="snRNA;ID=FBtr0081292;Name=snRNA:U4:38AB-RA;Parent=FBgn0003931;Dbxref=FlyBase_Annotation_IDs:CR32879-RA,REFSEQ:NR_001670;score_text=Weakly" - - - "Rfam_10.0=RF00015;U4;AAPU01010717.1/67148-67287\|5.5e-72" "Noncode_2.0=n4282_u361_D00042_snRNA_Drosophila\|1.4e-75" "unique_Noncode_2.0=u361_snRNA_Drosophila\|1.3e-75" -	3481	19,810,730 – 19,810,905	+	13	194	86.37	-1.81	0.85	0.947258
2532	dm3.chr2L	19,811,988 – 19,812,073	FBnoncoding="snRNA;ID=FBtr0081315;Name=snRNA:U5:38ABa-RA;Parent=FBgn0043022;Dbxref=FlyBase_Annotation_IDs:CR32881-RA,REFSEQ:NR_001671;score_text=Weakly" - - - "Rfam_10.0=RF00020;U5;AASV01048313.1/5-118\|6.5e-42" "Noncode_2.0=n387_u365_AE003664_snRNA_Drosophila\|6.5e-42" "unique_Noncode_2.0=u365_snRNA_Drosophila\|5.6e-42" -	3482	19,811,988 – 19,812,073	-	12	85	93.37	-1.42	0.96	0.890004
2533	dm3.chr2L	19,812,668 – 19,812,787	FBnoncoding="snRNA;ID=FBtr0081293;Name=snRNA:U2:38ABb-RA;Parent=FBgn0003923;Dbxref=FlyBase_Annotation_IDs:CR32878-RA,REFSEQ:NR_001672;score_text=Weakly" - - - "Rfam_10.0=RF00004;U2;AANI01017247.1/37186-37381\|2.7e-48" "Noncode_2.0=n385_u363_AE003664_snRNA_Drosophila\|5.0e-62" "unique_Noncode_2.0=u363_snRNA_Drosophila\|4.3e-62" -	3483	19,812,668 – 19,812,787	+	13	120	89.95	-1.57	0.86	0.855905
2533	dm3.chr2L	19,812,668 – 19,812,787		3484	19,812,668 – 19,812,787	-	13	120	89.95	-4.25	0.87	0.999221
2534	dm3.chr2L	19,815,601 – 19,815,768	FBnoncoding="snRNA;ID=FBtr0081313;Name=snRNA:U2:38ABa-RA;Parent=FBgn0003922;Dbxref=FlyBase_Annotation_IDs:CR32882-RA,REFSEQ:NR_001673;score_text=Weakly" - - - "Rfam_10.0=RF00004;U2;AAEU02000279.1/1183-1369\|1.4e-75" "Noncode_2.0=n5383_u364_X04246_snRNA_Drosophila\|6.1e-84" "unique_Noncode_2.0=u364_snRNA_Drosophila\|5.3e-84" -	3485	19,815,601 – 19,815,768	+	13	173	90.17	-4.18	0.83	0.999122
2534	dm3.chr2L	19,815,601 – 19,815,768		3486	19,815,601 – 19,815,768	-	13	173	90.17	-2.78	0.85	0.992569
2535	dm3.chr2L	19,816,410 – 19,816,544	FBnoncoding="snRNA;ID=FBtr0081294;Name=snRNA:U5:38ABb-RA;Parent=FBgn0043021;Dbxref=FlyBase_Annotation_IDs:CR32880-RA,REFSEQ:NR_001674;score_text=Weakly" - - - "Rfam_10.0=RF00020;U5;AABU01002759.1/1580853-1580981\|6.2e-68" "Noncode_2.0=n387_u365_AE003664_snRNA_Drosophila\|9.6e-67" "unique_Noncode_2.0=u365_snRNA_Drosophila\|8.4e-67" -	3487	19,816,410 – 19,816,516	+	13	118	82.34	-1.46	0.71	0.828519
2535	dm3.chr2L	19,816,410 – 19,816,544		3488	19,816,447 – 19,816,544	+	13	113	74.56	-2.18	0.46	0.967604
2536	dm3.chr2L	19,825,859 – 19,825,953	- - - - - - - -	3489	19,825,859 – 19,825,953	+	8	102	73.09	-2.74	0.27	0.791467
2536	dm3.chr2L	19,825,859 – 19,825,953	- - - - - - - -	3490	19,825,859 – 19,825,953	-	8	102	73.09	-2.54	0.34	0.896023
2537	dm3.chr2L	19,834,335 – 19,834,393	- - - - - - - -	3491	19,834,335 – 19,834,393	+	7	58	69.33	-1.58	0.41	0.861144
2537	dm3.chr2L	19,834,335 – 19,834,393	- - - - - - - -	3492	19,834,335 – 19,834,393	-	7	58	69.33	-0.91	0.50	0.721436
2538	dm3.chr2L	19,844,332 – 19,844,395	- - - - - - - -	3493	19,844,332 – 19,844,395	+	7	79	73.01	-2.21	0.57	0.983887
2539	dm3.chr2L	19,851,490 – 19,851,580	- - - - - - - -	3494	19,851,490 – 19,851,580	-	5	90	77.63	-1.40	0.64	0.609818
2540	dm3.chr2L	19,853,060 – 19,853,166	- - - - - - - -	3495	19,853,060 – 19,853,166	-	5	113	88.01	-1.49	0.80	0.500000
2541	dm3.chr2L	19,854,981 – 19,855,081	- - - - - - - -	3496	19,854,981 – 19,855,081	+	5	101	77.00	-1.64	0.68	0.756252
2541	dm3.chr2L	19,854,981 – 19,855,081	- - - - - - - -	3497	19,854,981 – 19,855,081	-	5	101	77.00	-2.83	0.65	0.991508
2542	dm3.chr2L	19,882,129 – 19,882,222	- - - intron="intron;ID=intron_FBgn0260966:3_FBgn0260966:4;Name=sick-in;Parent=FBtr0301718;parent_type=mRNA" - - - -	3498	19,882,129 – 19,882,222	+	9	97	67.70	-0.40	0.62	0.694333
2543	dm3.chr2L	19,884,901 – 19,885,017	- - - intron="intron;ID=intron_FBgn0260966:3_FBgn0260966:4;Name=sick-in;Parent=FBtr0301718;parent_type=mRNA" - - - -	3499	19,884,901 – 19,885,017	-	10	121	58.68	-1.94	0.21	0.840545
2544	dm3.chr2L	19,913,115 – 19,913,235	- - CDS="CDS;ID=CDS_CG33117:2_753;Name=Victoria-cds;Parent=FBtr0081309;parent_type=mRNA" - - - - -	3500	19,913,115 – 19,913,235	+	5	120	89.00	-1.74	0.85	0.832643
2545	dm3.chr2L	19,925,380 – 19,925,476	- - CDS="CDS;ID=CDS_FBgn0260966:10_802;Name=sick-cds;Parent=FBtr0301719;parent_type=mRNA" - - - - -	3501	19,925,380 – 19,925,476	-	10	99	89.76	-1.33	0.84	0.573515
2546	dm3.chr2L	19,930,650 – 19,930,740	- - - intron="intron;ID=intron_FBgn0260966:14_FBgn0260966:17;Name=sick-in;Parent=FBtr0301718;parent_type=mRNA" - - - -	3502	19,930,650 – 19,930,740	+	10	114	60.73	-0.68	0.42	0.554967
2547	dm3.chr2L	19,931,848 – 19,931,948	- - - intron="intron;ID=intron_FBgn0260966:14_FBgn0260966:17;Name=sick-in;Parent=FBtr0301718;parent_type=mRNA" - - - -	3503	19,931,848 – 19,931,948	-	6	102	95.11	-2.21	0.93	0.963951
2548	dm3.chr2L	19,937,895 – 19,937,950	- - - intron="intron;ID=intron_FBgn0260966:15_FBgn0260966:16;Name=sick-in;Parent=FBtr0301721;parent_type=mRNA" - - - -	3504	19,937,895 – 19,937,950	+	5	55	90.48	-1.62	0.83	0.610051
2549	dm3.chr2L	19,940,072 – 19,940,167	- - - intron="intron;ID=intron_FBgn0260966:15_FBgn0260966:16;Name=sick-in;Parent=FBtr0301721;parent_type=mRNA" - - - -	3505	19,940,072 – 19,940,167	-	6	95	73.79	-1.50	0.54	0.725559
2550	dm3.chr2L	19,957,542 – 19,957,632	- - - - - - - -	3506	19,957,542 – 19,957,632	+	12	109	70.64	-0.97	0.56	0.860754
2550	dm3.chr2L	19,957,542 – 19,957,632	- - - - - - - -	3507	19,957,542 – 19,957,632	-	12	109	70.64	-1.76	0.57	0.991617
2551	dm3.chr2L	19,957,684 – 19,957,776	- - - - - - - -	3508	19,957,684 – 19,957,776	+	11	107	66.59	-0.44	0.87	0.949176
2552	dm3.chr2L	19,979,726 – 19,979,822	- - - intron="intron;ID=intron_FBgn0032838:6_FBgn0032838:5;Name=CG13966-in;Parent=FBtr0302173;parent_type=mRNA" - - - -	3509	19,979,726 – 19,979,822	-	6	101	76.72	-1.62	0.61	0.850312
2553	dm3.chr2L	19,982,044 – 19,982,148	- - - intron="intron;ID=intron_FBgn0032838:6_FBgn0032838:5;Name=CG13966-in;Parent=FBtr0302173;parent_type=mRNA" - - - -	3510	19,982,044 – 19,982,148	-	5	113	78.58	-1.72	0.58	0.581881
2554	dm3.chr2L	19,985,059 – 19,985,189	- - - intron="intron;ID=intron_FBgn0032838:7_FBgn0032838:6;Name=CG13966-in;Parent=FBtr0302173;parent_type=mRNA" - - - -	3511	19,985,059 – 19,985,189	+	5	130	86.70	-1.90	0.71	0.650349
2554	dm3.chr2L	19,985,059 – 19,985,189		3512	19,985,059 – 19,985,189	-	5	130	86.70	-2.49	0.74	0.953955
2555	dm3.chr2L	19,989,336 – 19,989,403	- - - intron="intron;ID=intron_FBgn0032838:7_FBgn0032838:6;Name=CG13966-in;Parent=FBtr0302173;parent_type=mRNA" - - - -	3513	19,989,336 – 19,989,403	-	10	70	75.09	-1.23	0.53	0.633461
2556	dm3.chr2L	19,991,668 – 19,991,721	- - - intron="intron;ID=intron_FBgn0032838:7_FBgn0032838:6;Name=CG13966-in;Parent=FBtr0302173;parent_type=mRNA" - - - -	3514	19,991,668 – 19,991,721	-	4	53	73.19	-1.91	0.44	0.537230
2557	dm3.chr2L	19,996,147 – 19,996,286	- - - intron="intron;ID=intron_FBgn0032838:7_FBgn0032838:6;Name=CG13966-in;Parent=FBtr0302173;parent_type=mRNA" - - - -	3515	19,996,147 – 19,996,264	+	6	117	75.25	-2.13	0.58	0.977442
				3516	19,996,147 – 19,996,264	-	6	117	75.25	-1.08	0.60	0.544019
				3517	19,996,187 – 19,996,286	+	6	102	79.46	-1.90	0.63	0.899449
2558	dm3.chr2L	19,999,548 – 19,999,668	- - - intron="intron;ID=intron_FBgn0032838:8_FBgn0032838:7;Name=CG13966-in;Parent=FBtr0302173;parent_type=mRNA" - - - -	3518	19,999,548 – 19,999,668	-	4	120	89.36	-2.12	0.80	0.855722
2559	dm3.chr2L	20,014,697 – 20,014,800	- - - intron="intron;ID=intron_FBgn0032838:8_FBgn0032838:7;Name=CG13966-in;Parent=FBtr0302173;parent_type=mRNA" - - - -	3519	20,014,697 – 20,014,800	-	5	103	92.72	-1.62	0.93	0.873791
2560	dm3.chr2L	20,020,573 – 20,020,666	- - - - - - - -	3520	20,020,573 – 20,020,666	-	5	93	79.17	-1.62	0.79	0.934758
2561	dm3.chr2L	20,032,093 – 20,032,158	- - - intron="intron;ID=intron_CG13968:1_CG13968:5;Name=sNPF-in;Parent=FBtr0081327;parent_type=mRNA" - - - -	3521	20,032,093 – 20,032,158	-	5	71	91.10	-1.79	0.90	0.888707
2562	dm3.chr2L	20,035,195 – 20,035,322	- - - intron="intron;ID=intron_CG13968:1_CG13968:5;Name=sNPF-in;Parent=FBtr0081327;parent_type=mRNA" - - - -	3522	20,035,195 – 20,035,293	+	6	102	69.62	-1.56	0.66	0.990401
				3523	20,035,223 – 20,035,322	+	5	99	87.58	-1.83	0.87	0.923445
				3524	20,035,223 – 20,035,322	-	5	99	87.58	-1.48	0.81	0.602824
2563	dm3.chr2L	20,044,677 – 20,044,767	- - - intron="intron;ID=intron_CG13968:1_CG13968:5;Name=sNPF-in;Parent=FBtr0081327;parent_type=mRNA" - - - -	3525	20,044,677 – 20,044,767	+	5	91	70.49	-1.85	0.38	0.639695
2564	dm3.chr2L	20,067,910 – 20,068,012	- - - intron="intron;ID=intron_CG13969:1_CG13969:2;Name=bwa-in;Parent=FBtr0081331;parent_type=mRNA" - - - -	3526	20,067,910 – 20,068,012	+	5	108	90.61	-2.84	0.72	0.943320
2564	dm3.chr2L	20,067,910 – 20,068,012		3527	20,067,910 – 20,068,012	-	5	108	90.61	-2.93	0.75	0.969839
2565	dm3.chr2L	20,075,041 – 20,075,174	- - - - - - - -	3528	20,075,041 – 20,075,174	-	11	153	55.73	-1.24	0.42	0.986850
2566	dm3.chr2L	20,078,116 – 20,078,208	- - - intron="intron;ID=intron_FBgn0004374:1_FBgn0004374:2;Name=neb-in;Parent=FBtr0081332;parent_type=mRNA" - - - -	3529	20,078,116 – 20,078,208	-	6	97	81.58	-1.93	0.68	0.903970
2567	dm3.chr2L	20,129,492 – 20,129,572	- - - - - - - -	3530	20,129,492 – 20,129,572	+	5	80	87.44	-2.13	0.87	0.958244
2568	dm3.chr2L	20,130,221 – 20,130,317	- - - - - - - -	3531	20,130,221 – 20,130,317	-	9	96	70.44	-1.64	0.39	0.711322
2569	dm3.chr2L	20,131,775 – 20,131,867	- - - - - - - -	3532	20,131,775 – 20,131,867	-	10	94	73.31	-1.89	0.41	0.746993
2570	dm3.chr2L	20,176,927 – 20,176,986	- - - - - - - -	3533	20,176,927 – 20,176,986	-	4	60	57.18	-1.58	0.60	0.997658
2571	dm3.chr2L	20,183,843 – 20,183,902	- - - - - - - -	3534	20,183,843 – 20,183,902	-	4	60	57.18	-1.58	0.60	0.997658
2572	dm3.chr2L	20,184,182 – 20,184,287	- - - - - - - -	3535	20,184,182 – 20,184,287	+	8	117	51.32	-0.72	0.37	0.757410
2573	dm3.chr2L	20,200,379 – 20,200,471	- - - - - - - -	3536	20,200,379 – 20,200,471	-	4	94	48.38	-1.37	0.43	0.989090
2574	dm3.chr2L	20,234,652 – 20,234,768	- - - - - - - -	3537	20,234,652 – 20,234,768	+	5	117	76.72	-1.38	0.58	0.500000
2575	dm3.chr2L	20,238,933 – 20,239,036	- - - - - - - -	3538	20,238,933 – 20,239,036	+	8	103	63.58	-1.51	0.31	0.623736
2576	dm3.chr2L	20,246,170 – 20,246,266	- - - - - - - -	3539	20,246,170 – 20,246,266	+	7	119	57.65	-0.69	0.41	0.617114
2577	dm3.chr2L	20,247,210 – 20,247,308	- - - - - - - -	3540	20,247,210 – 20,247,308	+	3	98	93.20	-1.81	0.87	0.740321
2578	dm3.chr2L	20,255,046 – 20,255,137	- - - - - - - -	3541	20,255,046 – 20,255,137	+	5	92	66.11	-1.59	0.43	0.833628
2579	dm3.chr2L	20,257,487 – 20,257,578	- - - - - - - -	3542	20,257,487 – 20,257,578	+	3	102	84.59	-1.80	0.75	0.628940
2580	dm3.chr2L	20,260,363 – 20,260,466	- - - - - - - -	3543	20,260,363 – 20,260,466	+	12	116	80.49	-2.96	0.39	0.913728
2581	dm3.chr2L	20,261,364 – 20,261,471	- - - - - - - -	3544	20,261,364 – 20,261,471	-	6	123	66.90	-1.36	0.48	0.836762
2582	dm3.chr2L	20,262,606 – 20,262,697	- - - - - - - -	3545	20,262,606 – 20,262,697	-	4	91	65.86	-1.18	0.47	0.530659
2583	dm3.chr2L	20,267,790 – 20,267,881	- - - - - - - -	3546	20,267,790 – 20,267,881	+	5	116	77.11	-1.38	0.71	0.785576
2583	dm3.chr2L	20,267,790 – 20,267,881	- - - - - - - -	3547	20,267,790 – 20,267,881	-	5	116	77.11	-2.46	0.46	0.863546
2584	dm3.chr2L	20,270,466 – 20,270,587	- - - - - - - -	3548	20,270,466 – 20,270,587	+	9	127	83.32	-1.54	0.66	0.598907
2585	dm3.chr2L	20,327,754 – 20,327,865	- - - intron="intron;ID=intron_FBgn0003475:2_FBgn0003475:3;Name=spir-in;Parent=FBtr0081352,FBtr0081353,FBtr0081354,FBtr0301884;parent_type=mRNA" - - - -	3549	20,327,754 – 20,327,865	-	10	112	69.47	-1.93	0.27	0.547657
2586	dm3.chr2L	20,335,533 – 20,335,630	- - - intron="intron;ID=intron_FBgn0003475:4_FBgn0003475:5;Name=spir-in;Parent=FBtr0081352,FBtr0081353,FBtr0081354,FBtr0301884;parent_type=mRNA" - - - -	3550	20,335,533 – 20,335,630	+	5	107	71.46	-0.97	0.59	0.509393
2587	dm3.chr2L	20,341,659 – 20,341,776	- - - intron="intron;ID=intron_FBgn0003475:10_FBgn0003475:12;Name=spir-in;Parent=FBtr0081352,FBtr0081353,FBtr0081354,FBtr0301884;parent_type=mRNA" - - - -	3551	20,341,659 – 20,341,758	-	8	115	66.06	-1.44	0.34	0.539629
2587	dm3.chr2L	20,341,659 – 20,341,776		3552	20,341,683 – 20,341,776	+	6	93	86.81	-1.45	0.80	0.626075
2588	dm3.chr2L	20,343,794 – 20,343,929	- - CDS="CDS;ID=CDS_FBgn0003475:13_818;Name=spir-cds;Parent=FBtr0081353,FBtr0081354,FBtr0081355,FBtr0301884;parent_type=mRNA" - - - - -	3553	20,343,794 – 20,343,889	+	10	118	75.69	-1.47	0.55	0.641425
2588	dm3.chr2L	20,343,794 – 20,343,929		3554	20,343,815 – 20,343,929	+	12	120	73.73	-1.20	0.47	0.626189
2589	dm3.chr2L	20,354,629 – 20,354,783	- - - intron="intron;ID=intron_FBgn0015803:4_FBgn0015803:5;Name=rtGEF-in;Parent=FBtr0081357;parent_type=mRNA" - - - -	3555	20,354,629 – 20,354,743	-	4	118	82.40	-2.07	0.78	0.939958
2589	dm3.chr2L	20,354,629 – 20,354,783		3556	20,354,668 – 20,354,783	-	4	118	83.98	-1.90	0.74	0.782407
2590	dm3.chr2L	20,360,528 – 20,360,631	- - - - - - - -	3557	20,360,528 – 20,360,631	+	11	105	70.91	-1.08	0.46	0.757643
2590	dm3.chr2L	20,360,528 – 20,360,631	- - - - - - - -	3558	20,360,528 – 20,360,631	-	11	105	70.91	-1.11	0.51	0.897238
2591	dm3.chr2L	20,364,976 – 20,365,081	- - - - - - - -	3559	20,364,976 – 20,365,081	-	5	105	78.90	-1.86	0.89	0.982268
2592	dm3.chr2L	20,383,956 – 20,384,048	- - - - - - - -	3560	20,383,956 – 20,384,048	+	9	117	71.42	-1.74	0.41	0.672081
2593	dm3.chr2L	20,388,698 – 20,388,854	- - - intron="intron;ID=intron_FBgn0032857:2_FBgn0032857:1;Name=CG10947-in;Parent=FBtr0081369;parent_type=mRNA" - - - -	3561	20,388,698 – 20,388,815	-	6	117	68.38	-2.00	0.28	0.651443
				3562	20,388,738 – 20,388,854	+	6	116	69.45	-1.47	0.37	0.523078
				3563	20,388,738 – 20,388,854	-	6	116	69.45	-1.72	0.52	0.979999
2594	dm3.chr2L	20,396,035 – 20,396,133	- - - intron="intron;ID=intron_FBgn0032857:2_FBgn0032857:1;Name=CG10947-in;Parent=FBtr0081369;parent_type=mRNA" - - - -	3564	20,396,035 – 20,396,133	+	5	118	55.60	-1.33	0.48	0.969530
2595	dm3.chr2L	20,418,997 – 20,419,074	FBnoncoding="snoRNA;ID=FBtr0113543;Name=snoRNA:Psi18S-640b-RA;Parent=FBgn0083025;Dbxref=FlyBase_Annotation_IDs:CR34574-RA,REFSEQ:NR_003768;score_text=Weakly" - - intron="intron;ID=intron_CG10954:1_CG10954:2;Name=Arc-p34-in;Parent=FBtr0081358;parent_type=mRNA" - - - -	3565	20,418,997 – 20,419,074	+	10	93	62.39	-1.99	0.71	0.999506
2596	dm3.chr2L	20,419,148 – 20,419,284	FBnoncoding="snoRNA;ID=FBtr0113544;Name=snoRNA:Psi18S-525d-RA;Parent=FBgn0083035;Dbxref=FlyBase_Annotation_IDs:CR34575-RA,REFSEQ:NR_003769;score_text=Weakly" - - intron="intron;ID=intron_CG10954:1_CG10954:2;Name=Arc-p34-in;Parent=FBtr0081358;parent_type=mRNA" - - - -	3566	20,419,148 – 20,419,284	+	12	140	73.80	-1.36	0.73	0.986803
2597	dm3.chr2L	20,419,457 – 20,419,613	FBnoncoding="snoRNA;ID=FBtr0113546;Name=snoRNA:Psi18S-525e-RA;Parent=FBgn0083034;Dbxref=FlyBase_Annotation_IDs:CR34577-RA,REFSEQ:NR_003771;score_text=Weakly" - - intron="intron;ID=intron_CG10954:1_CG10954:2;Name=Arc-p34-in;Parent=FBtr0081358;parent_type=mRNA" - - - -	3567	20,419,457 – 20,419,613	+	12	163	69.28	-1.26	0.54	0.973744
2598	dm3.chr2L	20,419,620 – 20,419,736	FBnoncoding="snoRNA;ID=FBtr0113547;Name=snoRNA:Psi18S-640d-RA;Parent=FBgn0083023;Dbxref=FlyBase_Annotation_IDs:CR34578-RA,REFSEQ:NR_003772;score_text=Weakly" - - intron="intron;ID=intron_CG10954:1_CG10954:2;Name=Arc-p34-in;Parent=FBtr0081358;parent_type=mRNA" - - - -	3568	20,419,620 – 20,419,736	+	11	124	56.63	-0.93	0.35	0.827559
2599	dm3.chr2L	20,421,605 – 20,421,688	FBnoncoding="snoRNA;ID=FBtr0113553;Name=snoRNA:Psi18S-525i-RA;Parent=FBgn0083030;Dbxref=FlyBase_Annotation_IDs:CR34584-RA,REFSEQ:NR_003778;score_text=Weakly" - - intron="intron;ID=intron_CG10954:5_CG10954:6;Name=Arc-p34-in;Parent=FBtr0081358;parent_type=mRNA" - - - -	3569	20,421,605 – 20,421,688	+	12	85	61.38	-2.26	0.56	0.999883
2600	dm3.chr2L	20,421,779 – 20,421,845	FBnoncoding="snoRNA;ID=FBtr0113554;Name=snoRNA:Psi18S-640g-RA;Parent=FBgn0083020;Dbxref=FlyBase_Annotation_IDs:CR34585-RA,REFSEQ:NR_003779;score_text=Weakly" - - intron="intron;ID=intron_CG10954:5_CG10954:6;Name=Arc-p34-in;Parent=FBtr0081358;parent_type=mRNA" - - - -	3570	20,421,779 – 20,421,845	+	10	71	66.99	-3.32	0.27	0.997251
2601	dm3.chr2L	20,442,346 – 20,442,436	- - CDS="CDS;ID=CDS_FBgn0051688:7_769;Name=CG31688-cds;Parent=FBtr0273379;parent_type=mRNA" - - - - -	3571	20,442,346 – 20,442,436	+	12	107	61.36	-1.11	0.41	0.895165
2602	dm3.chr2L	20,443,007 – 20,443,137	- - CDS="CDS;ID=CDS_FBgn0051688:7_769;Name=CG31688-cds;Parent=FBtr0273379;parent_type=mRNA" - - - - -	3572	20,443,007 – 20,443,097	+	12	108	80.97	-3.09	0.53	0.993049
				3573	20,443,007 – 20,443,097	-	12	108	80.97	-1.96	0.61	0.899383
				3574	20,443,041 – 20,443,137	+	11	111	70.58	-1.87	0.44	0.936751
				3575	20,443,041 – 20,443,137	-	11	111	70.58	-1.75	0.44	0.904122
2603	dm3.chr2L	20,452,280 – 20,452,387	- - CDS="CDS;ID=CDS_FBgn0051687:3_824;Name=CG31687-cds;Parent=FBtr0081361;parent_type=mRNA" - - - - -	3576	20,452,280 – 20,452,387	+	9	110	80.54	-1.40	0.70	0.821985
2604	dm3.chr2L	20,453,139 – 20,453,193	- - - - - - - -	3577	20,453,139 – 20,453,193	-	6	65	68.69	-2.16	0.35	0.789379
2605	dm3.chr2L	20,478,781 – 20,478,871	- - - - - - - -	3578	20,478,781 – 20,478,871	+	7	93	79.31	-3.03	0.57	0.995469
2606	dm3.chr2L	20,481,911 – 20,482,009	- - - - - - - -	3579	20,481,911 – 20,482,009	+	11	116	72.28	-1.35	0.50	0.727469
2607	dm3.chr2L	20,486,197 – 20,486,311	- - - - - - - -	3580	20,486,197 – 20,486,311	+	5	114	86.92	-1.80	0.76	0.721924
2607	dm3.chr2L	20,486,197 – 20,486,311	- - - - - - - -	3581	20,486,197 – 20,486,311	-	5	114	86.92	-2.08	0.78	0.900365
2608	dm3.chr2L	20,486,980 – 20,487,050	- - - - - - - -	3582	20,486,980 – 20,487,050	+	11	70	99.22	-1.10	0.99	0.679686
2608	dm3.chr2L	20,486,980 – 20,487,050	- - - - - - - -	3583	20,486,980 – 20,487,050	-	11	70	99.22	-1.50	0.99	0.877264
2609	dm3.chr2L	20,487,432 – 20,487,536	FBnoncoding="pre_miRNA;ID=FBtr0304487;Name=mir-1-RM;Parent=FBgn0262455;Alias=CR43027-RM;Dbxref=FlyBase_Annotation_IDs:CR43027-RM,miRBase:MI0000116" - - - "Rfam_10.0=RF00103;mir-1;AAPT01020974.1/21428-21504\|4.2e-25" "Noncode_2.0=n178696_u177794_NW_045819_miRNA_Anopheles\|3.5e-10" "unique_Noncode_2.0=u177794_miRNA_Anopheles\|3.1e-10" "mirBase_v16=dme-mir-1\|4.2e-47"	3584	20,487,432 – 20,487,536	+	13	114	80.76	-5.08	0.82	0.999573
2609	dm3.chr2L	20,487,432 – 20,487,536		3585	20,487,432 – 20,487,536	-	13	114	80.76	-2.14	0.71	0.983537
2610	dm3.chr2L	20,498,408 – 20,498,503	- - - - - - - -	3586	20,498,408 – 20,498,503	-	11	98	82.63	-1.82	0.69	0.898704
2611	dm3.chr2L	20,499,748 – 20,499,840	- - - - - - - -	3587	20,499,748 – 20,499,840	-	5	111	58.69	-2.19	0.22	0.600219
2612	dm3.chr2L	20,502,796 – 20,502,928	- - - - - - - -	3588	20,502,796 – 20,502,888	+	6	104	74.92	-2.08	0.68	0.988994
2612	dm3.chr2L	20,502,796 – 20,502,928	- - - - - - - -	3589	20,502,833 – 20,502,928	-	6	107	81.13	-1.43	0.75	0.750127
2613	dm3.chr2L	20,504,529 – 20,504,641	- - - - - - - -	3590	20,504,529 – 20,504,641	-	5	116	86.27	-2.51	0.59	0.787456
2614	dm3.chr2L	20,506,926 – 20,507,041	- - - - - - - -	3591	20,506,926 – 20,507,041	+	3	119	92.72	-1.97	0.86	0.810672
2615	dm3.chr2L	20,507,412 – 20,507,514	- - - - - - - -	3592	20,507,412 – 20,507,514	-	7	102	65.98	-1.00	0.53	0.932507
2616	dm3.chr2L	20,512,598 – 20,512,692	- - - - - - - -	3593	20,512,598 – 20,512,692	-	6	95	79.58	-1.59	0.63	0.755424
2617	dm3.chr2L	20,513,334 – 20,513,425	- - - - - - - -	3594	20,513,334 – 20,513,425	-	12	112	81.04	-1.57	0.62	0.691720
2618	dm3.chr2L	20,516,585 – 20,516,688	- - - - - - - -	3595	20,516,585 – 20,516,688	+	12	120	77.36	-0.95	0.67	0.588023
2619	dm3.chr2L	20,525,691 – 20,525,786	- - - - - - - -	3596	20,525,691 – 20,525,786	+	6	99	79.23	-1.85	0.58	0.647565
2620	dm3.chr2L	20,534,505 – 20,534,623	- - - - - - - -	3597	20,534,505 – 20,534,623	+	6	119	66.55	-0.49	0.60	0.747893
2621	dm3.chr2L	20,536,660 – 20,536,784	- - - - - - - -	3598	20,536,660 – 20,536,761	-	12	120	90.30	-2.09	0.87	0.949384
				3599	20,536,681 – 20,536,784	+	11	106	92.39	-1.54	0.88	0.734748
				3600	20,536,681 – 20,536,784	-	11	106	92.39	-2.24	0.74	0.743144
2622	dm3.chr2L	20,541,135 – 20,541,227	- - - - - - - -	3601	20,541,135 – 20,541,227	+	11	118	83.01	-1.44	0.69	0.523952
2622	dm3.chr2L	20,541,135 – 20,541,227	- - - - - - - -	3602	20,541,135 – 20,541,227	-	11	118	83.01	-2.12	0.67	0.912634
2623	dm3.chr2L	20,544,104 – 20,544,220	- - - - - - - -	3603	20,544,104 – 20,544,217	-	12	118	84.75	-1.69	0.75	0.878858
2623	dm3.chr2L	20,544,104 – 20,544,220	- - - - - - - -	3604	20,544,105 – 20,544,220	-	12	119	84.54	-2.10	0.68	0.936695
2624	dm3.chr2L	20,546,499 – 20,546,589	- - - - - - - -	3605	20,546,499 – 20,546,589	-	8	102	68.87	-1.20	0.51	0.820313
2625	dm3.chr2L	20,560,125 – 20,560,254	- - - - - - - -	3606	20,560,125 – 20,560,254	+	6	135	82.75	-1.95	0.62	0.733032
2626	dm3.chr2L	20,587,592 – 20,587,688	- - - - - - - -	3607	20,587,592 – 20,587,688	-	4	96	72.82	-1.36	0.58	0.602186
2627	dm3.chr2L	20,593,916 – 20,594,006	- - - - - - - -	3608	20,593,916 – 20,594,006	-	6	102	67.82	-2.07	0.34	0.715661
2628	dm3.chr2L	20,606,241 – 20,606,332	- - - - - - - -	3609	20,606,241 – 20,606,331	-	6	113	54.88	-0.60	0.78	0.988510
2628	dm3.chr2L	20,606,241 – 20,606,332	- - - - - - - -	3610	20,606,241 – 20,606,332	-	6	108	55.75	-0.50	0.44	0.689313
2629	dm3.chr2L	20,607,528 – 20,607,625	- - - - - - - -	3611	20,607,528 – 20,607,625	-	7	110	64.73	-1.56	0.31	0.519144
2630	dm3.chr2L	20,608,556 – 20,608,618	- - - - - - - -	3612	20,608,556 – 20,608,618	-	9	65	71.19	-1.14	0.47	0.598131
2631	dm3.chr2L	20,609,365 – 20,609,500	- - - - - - - -	3613	20,609,365 – 20,609,500	-	4	135	75.81	-1.63	0.57	0.611528
2632	dm3.chr2L	20,618,539 – 20,618,636	- - - - - - - -	3614	20,618,539 – 20,618,636	+	12	113	67.55	-1.58	0.33	0.655283
2633	dm3.chr2L	20,618,726 – 20,618,783	- - - - - - - -	3615	20,618,726 – 20,618,783	-	5	64	55.28	-0.05	0.55	0.666037
2634	dm3.chr2L	20,619,866 – 20,619,922	- - - - - - - -	3616	20,619,866 – 20,619,922	+	8	56	89.38	-1.00	0.95	0.728230
2635	dm3.chr2L	20,625,800 – 20,625,896	- - - - - - - -	3617	20,625,800 – 20,625,896	+	4	97	69.82	-1.43	0.56	0.801071
2635	dm3.chr2L	20,625,800 – 20,625,896	- - - - - - - -	3618	20,625,800 – 20,625,896	-	4	97	69.82	-2.03	0.51	0.944871
2636	dm3.chr2L	20,627,745 – 20,627,846	- - - - - - - -	3619	20,627,745 – 20,627,846	+	10	106	75.78	-2.02	0.39	0.789409
2637	dm3.chr2L	20,637,213 – 20,637,328	- - - - - - - -	3620	20,637,213 – 20,637,328	+	4	120	78.08	-1.93	0.54	0.544700
2638	dm3.chr2L	20,637,418 – 20,637,539	- - - - - - - -	3621	20,637,418 – 20,637,539	+	3	123	81.42	-1.87	0.75	0.799924
2639	dm3.chr2L	20,641,187 – 20,641,300	- - CDS="CDS;ID=CDS_FBgn0261058:2_814;Name=Sfp38D-cds;Parent=FBtr0301938;parent_type=mRNA" - - - - -	3622	20,641,187 – 20,641,300	-	6	113	70.38	-0.93	0.55	0.732918
2640	dm3.chr2L	20,645,822 – 20,645,901	- - - - - - - -	3623	20,645,822 – 20,645,901	+	8	95	68.82	-1.55	0.72	0.986335
2640	dm3.chr2L	20,645,822 – 20,645,901	- - - - - - - -	3624	20,645,822 – 20,645,901	-	8	95	68.82	-2.87	0.51	0.998384
2641	dm3.chr2L	20,665,068 – 20,665,168	- - - - - - - -	3625	20,665,068 – 20,665,168	-	8	110	61.50	-1.88	0.33	0.960957
2642	dm3.chr2L	20,668,615 – 20,668,715	- - - - - - - -	3626	20,668,615 – 20,668,715	-	3	100	88.33	-1.32	0.97	0.882923
2643	dm3.chr2L	20,672,044 – 20,672,149	- - - - - - - -	3627	20,672,044 – 20,672,149	-	4	109	79.91	-1.91	0.64	0.737305
2644	dm3.chr2L	20,691,990 – 20,692,108	- - - intron="intron;ID=intron_FBgn0014859:6_FBgn0014859:5;Name=Hr38-in;Parent=FBtr0081397;parent_type=mRNA" - - - -	3628	20,691,990 – 20,692,108	-	4	118	92.37	-2.26	0.83	0.895387
2645	dm3.chr2L	20,692,273 – 20,692,352	- - - intron="intron;ID=intron_FBgn0014859:6_FBgn0014859:5;Name=Hr38-in;Parent=FBtr0081397;parent_type=mRNA" - - - -	3629	20,692,273 – 20,692,352	+	5	84	61.61	-0.88	0.46	0.500000
2646	dm3.chr2L	20,697,599 – 20,697,692	- - - intron="intron;ID=intron_FBgn0014859:6_FBgn0014859:5;Name=Hr38-in;Parent=FBtr0081397;parent_type=mRNA" - - - -	3630	20,697,599 – 20,697,692	-	5	101	70.37	-1.12	0.62	0.794858
2647	dm3.chr2L	20,706,943 – 20,707,043	- - - intron="intron;ID=intron_FBgn0014859:6_FBgn0014859:5;Name=Hr38-in;Parent=FBtr0081397;parent_type=mRNA" - - - -	3631	20,706,943 – 20,707,043	-	5	112	67.33	-2.20	0.38	0.925594
2648	dm3.chr2L	20,709,904 – 20,710,014	- - - intron="intron;ID=intron_FBgn0014859:6_FBgn0014859:5;Name=Hr38-in;Parent=FBtr0081397;parent_type=mRNA" - - - -	3632	20,709,904 – 20,710,014	-	8	120	75.21	-1.41	0.55	0.730792
2649	dm3.chr2L	20,712,876 – 20,712,972	- - - intron="intron;ID=intron_FBgn0014859:6_FBgn0014859:5;Name=Hr38-in;Parent=FBtr0081397;parent_type=mRNA" - - - -	3633	20,712,876 – 20,712,972	-	8	104	61.85	-2.14	0.29	0.895495
2650	dm3.chr2L	20,713,120 – 20,713,229	- - CDS="CDS;ID=CDS_FBgn0014859:6_794;Name=Hr38-cds;Parent=FBtr0081397;parent_type=mRNA" - - - - -	3634	20,713,120 – 20,713,229	-	7	112	76.65	-1.38	0.60	0.746650
2651	dm3.chr2L	20,714,518 – 20,714,608	- - - - - - - -	3635	20,714,518 – 20,714,608	-	10	108	65.90	-1.20	0.54	0.966523
2652	dm3.chr2L	20,719,297 – 20,719,404	- - - - - - - -	3636	20,719,297 – 20,719,388	-	4	91	72.73	-0.93	0.81	0.782257
2652	dm3.chr2L	20,719,297 – 20,719,404	- - - - - - - -	3637	20,719,307 – 20,719,404	-	5	97	71.91	-1.47	0.72	0.946384
2653	dm3.chr2L	20,723,682 – 20,723,739	- - - - - - - -	3638	20,723,682 – 20,723,739	+	6	62	64.40	-1.57	0.39	0.829935
2654	dm3.chr2L	20,735,633 – 20,735,726	- - - intron="intron;ID=intron_FBgn0000986:4_FBgn0000986:5;Name=Fs(2)Ket-in;Parent=FBtr0305586,FBtr0081392,FBtr0305584,FBtr0305585,FBtr0305587;parent_type=mRNA" - - - -	3639	20,735,633 – 20,735,726	-	5	93	94.41	-2.62	0.88	0.974015
2655	dm3.chr2L	20,787,605 – 20,787,697	- - - - - - - -	3640	20,787,605 – 20,787,697	+	4	92	64.31	-0.74	0.58	0.730322
2656	dm3.chr2L	20,789,058 – 20,789,162	- - - - - - - -	3641	20,789,058 – 20,789,162	+	7	104	58.18	-0.74	0.42	0.808842
2657	dm3.chr2L	20,799,001 – 20,799,053	- - - intron="intron;ID=intron_FBgn0032886:1_FBgn0032886:3;Name=CG9328-in;Parent=FBtr0081415;parent_type=mRNA" - - - -	3642	20,799,001 – 20,799,053	+	3	54	88.89	-1.22	1.00	0.902331
2657	dm3.chr2L	20,799,001 – 20,799,053		3643	20,799,001 – 20,799,053	-	3	54	88.89	-2.92	1.00	0.997604
2658	dm3.chr2L	20,802,440 – 20,802,495	- - - intron="intron;ID=intron_FBgn0032886:1_FBgn0032886:3;Name=CG9328-in;Parent=FBtr0081415;parent_type=mRNA" - - - -	3644	20,802,440 – 20,802,495	-	3	55	92.73	-1.52	1.01	0.950534
2659	dm3.chr2L	20,803,601 – 20,803,702	- - - intron="intron;ID=intron_FBgn0032886:1_FBgn0032886:3;Name=CG9328-in;Parent=FBtr0081415;parent_type=mRNA" - - - -	3645	20,803,601 – 20,803,702	+	5	118	82.46	-1.61	0.68	0.558015
2660	dm3.chr2L	20,804,718 – 20,804,821	- - - intron="intron;ID=intron_FBgn0032886:1_FBgn0032886:3;Name=CG9328-in;Parent=FBtr0081415;parent_type=mRNA" - - - -	3646	20,804,718 – 20,804,821	+	6	111	73.07	-1.10	0.63	0.785222
2661	dm3.chr2L	20,809,852 – 20,809,944	- - - intron="intron;ID=intron_FBgn0032886:1_FBgn0032886:3;Name=CG9328-in;Parent=FBtr0081415;parent_type=mRNA" - - - -	3647	20,809,852 – 20,809,944	+	8	109	86.84	-1.78	0.95	0.968289
2661	dm3.chr2L	20,809,852 – 20,809,944		3648	20,809,852 – 20,809,944	-	8	109	86.84	-1.91	0.89	0.952889
2662	dm3.chr2L	20,833,099 – 20,833,215	- - CDS="CDS;ID=CDS_FBgn0032891:1_770;Name=Oseg5-cds;Parent=FBtr0290042;parent_type=mRNA" - - - - -	3649	20,833,099 – 20,833,215	+	14	117	76.46	-0.99	0.50	0.500000
2663	dm3.chr2L	20,852,754 – 20,852,856	- - CDS="CDS;ID=CDS_CG9335:1_754;Name=CG9335-cds;Parent=FBtr0081426;parent_type=mRNA" - - - - -	3650	20,852,754 – 20,852,856	+	10	106	60.26	-0.37	0.45	0.716852
2664	dm3.chr2L	20,865,265 – 20,865,357	- - CDS="CDS;ID=CDS_CG9338:1_747;Name=CG9338-cds;Parent=FBtr0081428;parent_type=mRNA" - - - - -	3651	20,865,265 – 20,865,357	-	12	118	61.01	-0.66	0.46	0.840760
2665	dm3.chr2L	20,915,047 – 20,915,157	- - - intron="intron;ID=intron_FBgn0032901:16_FBgn0032901:14;Name=CG9339-in;Parent=FBtr0081442,FBtr0081443;parent_type=mRNA" - - - -	3652	20,915,047 – 20,915,154	+	4	108	89.66	-1.81	0.81	0.694758
				3653	20,915,047 – 20,915,154	-	4	108	89.66	-3.14	0.66	0.956377
				3654	20,915,049 – 20,915,157	-	4	108	90.97	-2.81	0.68	0.879306
2666	dm3.chr2L	20,915,636 – 20,915,766	- - - intron="intron;ID=intron_FBgn0032901:16_FBgn0032901:14;Name=CG9339-in;Parent=FBtr0081442,FBtr0081443;parent_type=mRNA" - - - -	3655	20,915,636 – 20,915,744	+	7	119	70.40	-1.69	0.45	0.863147
				3656	20,915,675 – 20,915,766	+	4	91	91.39	-1.97	0.88	0.904059
				3657	20,915,675 – 20,915,766	-	4	91	91.39	-1.03	1.00	0.829652
2667	dm3.chr2L	20,929,191 – 20,929,253	- - - - - - - -	3658	20,929,191 – 20,929,253	-	11	79	70.85	-1.92	0.38	0.802606
2668	dm3.chr2L	20,935,554 – 20,935,664	- - - - - - - -	3659	20,935,554 – 20,935,664	-	7	112	68.48	-1.62	0.33	0.615268
2669	dm3.chr2L	20,937,802 – 20,937,919	- - - - - - - -	3660	20,937,802 – 20,937,895	-	11	113	72.82	-1.33	0.53	0.854191
2669	dm3.chr2L	20,937,802 – 20,937,919	- - - - - - - -	3661	20,937,818 – 20,937,919	-	11	115	71.17	-1.35	0.50	0.877052
2670	dm3.chr2L	20,942,869 – 20,942,963	- - - - - - - -	3662	20,942,869 – 20,942,963	-	3	94	82.80	-2.11	0.77	0.901578
2671	dm3.chr2L	20,944,126 – 20,944,194	- - - - - - - -	3663	20,944,126 – 20,944,194	-	9	80	79.98	-1.24	0.69	0.612234
2672	dm3.chr2L	20,951,082 – 20,951,179	- - - - - - - -	3664	20,951,082 – 20,951,179	-	7	104	79.38	-1.22	0.71	0.730402
2673	dm3.chr2L	20,951,574 – 20,951,680	- - - - - - - -	3665	20,951,574 – 20,951,680	+	6	116	82.90	-1.59	0.85	0.912273
2673	dm3.chr2L	20,951,574 – 20,951,680	- - - - - - - -	3666	20,951,574 – 20,951,680	-	6	116	82.90	-1.16	0.80	0.561251
2674	dm3.chr2L	20,953,569 – 20,953,645	- - - - - - - -	3667	20,953,569 – 20,953,645	+	9	84	68.37	-1.14	0.44	0.747095
2674	dm3.chr2L	20,953,569 – 20,953,645	- - - - - - - -	3668	20,953,569 – 20,953,645	-	9	84	68.37	-1.64	0.32	0.586804
2675	dm3.chr2L	20,960,118 – 20,960,234	- - - - - - - -	3669	20,960,118 – 20,960,234	+	4	117	70.51	-2.00	0.47	0.884294
2676	dm3.chr2L	20,974,654 – 20,974,779	- - - - - - - -	3670	20,974,654 – 20,974,779	-	12	125	86.23	-2.00	0.69	0.852534
2677	dm3.chr2L	20,975,844 – 20,975,945	- - - - - - - -	3671	20,975,844 – 20,975,945	-	9	117	73.48	-2.04	0.43	0.871786
2678	dm3.chr2L	21,005,059 – 21,005,117	- - - - - - - -	3672	21,005,059 – 21,005,117	+	3	58	90.64	-1.39	0.99	0.915641
2679	dm3.chr2L	21,016,465 – 21,016,563	- - - - - - - -	3673	21,016,465 – 21,016,563	+	6	98	86.46	-2.67	0.68	0.961242
2679	dm3.chr2L	21,016,465 – 21,016,563	- - - - - - - -	3674	21,016,465 – 21,016,563	-	6	98	86.46	-1.63	0.74	0.597725
2680	dm3.chr2L	21,030,802 – 21,030,875	- - - - - - - -	3675	21,030,802 – 21,030,875	-	10	84	68.19	-2.26	0.29	0.888058
2681	dm3.chr2L	21,032,749 – 21,032,839	- - - - - - - -	3676	21,032,749 – 21,032,839	+	5	90	95.67	-1.96	0.84	0.689311
2682	dm3.chr2L	21,034,301 – 21,034,351	- - - - - - - -	3677	21,034,301 – 21,034,351	-	8	53	68.68	-1.90	0.53	0.992132
2683	dm3.chr2L	21,034,588 – 21,034,658	- - - - - - - -	3678	21,034,588 – 21,034,658	-	5	70	85.20	-1.46	0.79	0.571125
2684	dm3.chr2L	21,062,880 – 21,062,976	- - - intron="intron;ID=intron_FBgn0032910:8_FBgn0032910:7;Name=CG9265-in;Parent=FBtr0081507;parent_type=mRNA" - - - -	3679	21,062,880 – 21,062,976	+	7	100	69.25	-1.23	0.48	0.838781
2685	dm3.chr2L	21,069,788 – 21,069,881	- - - - - - - -	3680	21,069,788 – 21,069,881	-	7	106	69.80	-1.59	0.49	0.807839
2686	dm3.chr2L	21,080,734 – 21,080,855	- - - - - - - -	3681	21,080,734 – 21,080,845	+	11	123	80.37	-2.17	0.48	0.748672
2686	dm3.chr2L	21,080,734 – 21,080,855	- - - - - - - -	3682	21,080,744 – 21,080,855	+	11	120	84.47	-2.00	0.56	0.551209
2687	dm3.chr2L	21,097,110 – 21,097,223	- - - intron="intron;ID=intron_FBgn0032915:2_FBgn0032915:1;Name=CG12050-in;Parent=FBtr0114615;parent_type=mRNA" - - - -	3683	21,097,110 – 21,097,223	+	5	113	90.97	-1.49	0.84	0.536822
2688	dm3.chr2L	21,101,820 – 21,101,934	- - CDS="CDS;ID=CDS_FBgn0032915:6_780;Name=CG12050-cds;Parent=FBtr0114615;parent_type=mRNA" - - - - -	3684	21,101,820 – 21,101,934	+	12	120	68.83	-1.98	0.27	0.696749
2689	dm3.chr2L	21,104,655 – 21,104,762	- - - - - - - -	3685	21,104,655 – 21,104,762	+	12	120	84.40	-1.74	0.70	0.733818
2690	dm3.chr2L	21,111,220 – 21,111,323	- - - intron="intron;ID=intron_FBgn0040297:2_FBgn0040297:3;Name=Nhe2-in;Parent=FBtr0081467,FBtr0306015,FBtr0306016,FBtr0299908,FBtr0299909,FBtr0299911,FBtr0299912;parent_type=mRNA" - - - -	3686	21,111,220 – 21,111,323	+	5	122	69.34	-1.02	0.61	0.664956
2691	dm3.chr2L	21,113,801 – 21,113,904	- - - intron="intron;ID=intron_FBgn0040297:2_FBgn0040297:3;Name=Nhe2-in;Parent=FBtr0081467,FBtr0306015,FBtr0306016,FBtr0299908,FBtr0299909,FBtr0299911,FBtr0299912;parent_type=mRNA" - - - -	3687	21,113,801 – 21,113,904	+	12	117	66.94	-1.45	0.41	0.927035
2691	dm3.chr2L	21,113,801 – 21,113,904		3688	21,113,801 – 21,113,904	-	12	117	66.94	-1.01	0.45	0.839159
2692	dm3.chr2L	21,114,709 – 21,114,800	- - CDS="CDS;ID=CDS_FBgn0040297:3_875;Name=Nhe2-cds;Parent=FBtr0299912;parent_type=mRNA" - - - - -	3689	21,114,709 – 21,114,800	+	12	114	64.32	-1.61	0.32	0.692765
2693	dm3.chr2L	21,126,656 – 21,126,734	- - - intron="intron;ID=intron_FBgn0040297:22_FBgn0040297:23;Name=Nhe2-in;Parent=FBtr0081466,FBtr0081467,FBtr0306015,FBtr0306016,FBtr0299912;parent_type=mRNA" - - - -	3690	21,126,656 – 21,126,734	-	3	81	90.95	-1.02	0.95	0.592098
2694	dm3.chr2L	21,130,202 – 21,130,295	- - CDS="CDS;ID=CDS_FBgn0040297:25_719;Name=Nhe2-cds;Parent=FBtr0306015;parent_type=mRNA" - - - - -	3691	21,130,202 – 21,130,295	-	6	95	67.13	-0.92	0.53	0.749293
2695	dm3.chr2L	21,157,313 – 21,157,423	- - CDS="CDS;ID=CDS_CG9250:1_717;Name=Mpp6-cds;Parent=FBtr0081469;parent_type=mRNA" - - - - -	3692	21,157,313 – 21,157,423	+	3	110	96.97	-1.72	0.96	0.892831
2695	dm3.chr2L	21,157,313 – 21,157,423		3693	21,157,313 – 21,157,423	-	3	110	96.97	-1.20	0.95	0.566475
2696	dm3.chr2L	21,187,980 – 21,188,124	- - - intron="intron;ID=intron_CG14396:3_CG14396:4;Name=Ret-in;Parent=FBtr0081493,FBtr0081494,FBtr0081495,FBtr0081496,FBtr0081492;parent_type=mRNA" - - - -	3694	21,187,980 – 21,188,084	+	8	104	74.55	-2.25	0.37	0.809022
2696	dm3.chr2L	21,187,980 – 21,188,124		3695	21,188,006 – 21,188,124	+	6	118	73.24	-1.52	0.61	0.936789
2697	dm3.chr2L	21,215,018 – 21,215,195	FBnoncoding="snRNA;ID=FBtr0081489;Name=snRNA:U4:39B-RA;Parent=FBgn0003930;Dbxref=FlyBase_Annotation_IDs:CR31625-RA,REFSEQ:NR_001679;score_text=Weakly" - - intron="intron;ID=intron_FBgn0032935:4_FBgn0032935:3;Name=CG8678-in;Parent=FBtr0081487;parent_type=mRNA" "Rfam_10.0=RF00015;U4;AAPU01010717.1/67148-67287\|1.2e-57" "Noncode_2.0=n389_u367_AE003669_snRNA_Drosophila\|3.7e-76" "unique_Noncode_2.0=u367_snRNA_Drosophila\|3.2e-76" -	3696	21,215,018 – 21,215,195	-	13	195	83.22	-2.04	0.64	0.915345
2698	dm3.chr2L	21,227,811 – 21,227,901	- - CDS="CDS;ID=CDS_CG8677:5_734;Name=CG8677-cds;Parent=FBtr0081477;parent_type=mRNA" - - - - -	3697	21,227,811 – 21,227,901	+	12	111	66.00	-1.96	0.23	0.517621
2699	dm3.chr2L	21,231,786 – 21,231,844	- - - intron="intron;ID=intron_CG8677:8_CG8677:9;Name=CG8677-in;Parent=FBtr0081477;parent_type=mRNA" - - - -	3698	21,231,786 – 21,231,844	-	3	58	93.10	-1.78	0.90	0.825308
2700	dm3.chr2L	21,232,542 – 21,232,608	- - CDS="CDS;ID=CDS_CG8677:9_734;Name=CG8677-cds;Parent=FBtr0081477;parent_type=mRNA" - - - - -	3699	21,232,542 – 21,232,608	+	10	86	69.70	-2.67	0.24	0.773842
2700	dm3.chr2L	21,232,542 – 21,232,608		3700	21,232,542 – 21,232,608	-	10	86	69.70	-1.96	0.33	0.656440
2701	dm3.chr2L	21,270,357 – 21,270,486	- - - intron="intron;ID=intron_FBgn0032938:3_FBgn0032938:4;Name=CG8671-in;Parent=FBtr0081484;parent_type=mRNA" - - - -	3701	21,270,357 – 21,270,486	-	5	129	57.05	-1.74	0.26	0.790382
2702	dm3.chr2L	21,274,308 – 21,274,465	- - CDS="CDS;ID=CDS_FBgn0032938:6_780;Name=CG8671-cds;Parent=FBtr0081483;parent_type=mRNA" - - - - -	3702	21,274,308 – 21,274,425	-	12	120	73.66	-2.22	0.35	0.893091
				3703	21,274,345 – 21,274,464	-	10	120	65.22	-0.97	0.44	0.834389
				3704	21,274,346 – 21,274,465	-	8	120	69.07	-1.26	0.71	0.991656
2703	dm3.chr2L	21,307,580 – 21,307,654	- - - intron="intron;ID=intron_FBgn0032940:22_FBgn0032940:15;Name=Mio-in;Parent=FBtr0301457;parent_type=mRNA" - - - -	3705	21,307,580 – 21,307,654	-	5	78	60.77	-3.10	0.13	0.824326
2704	dm3.chr2L	21,310,001 – 21,310,116	- - - - - - - -	3706	21,310,001 – 21,310,116	+	8	117	66.27	-1.68	0.30	0.640399
2705	dm3.chr2L	21,310,946 – 21,311,045	- - - - - - - -	3707	21,310,946 – 21,311,045	+	12	114	73.15	-1.22	0.63	0.931717
2706	dm3.chr2L	21,327,506 – 21,327,601	- - - - - - - -	3708	21,327,506 – 21,327,601	+	7	97	71.57	-1.76	0.41	0.875693
2706	dm3.chr2L	21,327,506 – 21,327,601	- - - - - - - -	3709	21,327,506 – 21,327,601	-	7	97	71.57	-1.87	0.43	0.938239
2707	dm3.chr2L	21,344,490 – 21,344,675	- - - - - - - -	3710	21,344,490 – 21,344,597	-	5	120	72.95	-1.12	0.62	0.605947
				3711	21,344,530 – 21,344,637	+	5	120	73.57	-1.61	0.56	0.739373
				3712	21,344,557 – 21,344,675	-	5	120	83.13	-1.61	0.69	0.536728
2708	dm3.chr2L	21,394,171 – 21,394,227	- - - - - - - -	3713	21,394,171 – 21,394,227	-	3	56	92.86	-1.30	1.02	0.929123
2709	dm3.chr2L	21,406,814 – 21,406,875	- - - - - - - -	3714	21,406,814 – 21,406,875	+	5	62	62.07	-0.56	0.65	0.925031
2709	dm3.chr2L	21,406,814 – 21,406,875	- - - - - - - -	3715	21,406,814 – 21,406,875	-	5	62	62.07	-1.19	0.43	0.823562
2710	dm3.chr2L	21,423,135 – 21,423,190	- - - - - - - -	3716	21,423,135 – 21,423,190	+	11	66	58.05	-2.01	0.64	0.999859
2710	dm3.chr2L	21,423,135 – 21,423,190	- - - - - - - -	3717	21,423,135 – 21,423,190	-	11	66	58.05	-1.50	0.71	0.999519
2711	dm3.chr2L	21,439,210 – 21,439,270	- - - - - - - -	3718	21,439,210 – 21,439,270	+	8	67	68.50	-1.73	0.86	0.997273
2711	dm3.chr2L	21,439,210 – 21,439,270	- - - - - - - -	3719	21,439,210 – 21,439,270	-	8	67	68.50	-2.12	0.83	0.998915
2712	dm3.chr2L	21,456,376 – 21,456,451	- - CDS="CDS;ID=CDS_CG33816:1_705;Name=His1:CG33816-cds;Parent=FBtr0091820;parent_type=mRNA" - - - - -	3720	21,456,376 – 21,456,451	-	15	75	69.79	-0.88	0.41	0.612162
2713	dm3.chr2L	21,467,135 – 21,467,276	- - - - - - - -	3721	21,467,135 – 21,467,276	+	11	147	62.04	-2.41	0.17	0.883039
2713	dm3.chr2L	21,467,135 – 21,467,276	- - - - - - - -	3722	21,467,135 – 21,467,276	-	11	147	62.04	-2.57	0.10	0.695276
2714	dm3.chr2L	21,477,255 – 21,477,366	- - - - - - - -	3723	21,477,255 – 21,477,366	+	13	122	55.29	-2.49	0.25	0.996640
2714	dm3.chr2L	21,477,255 – 21,477,366	- - - - - - - -	3724	21,477,255 – 21,477,366	-	13	122	55.29	-1.90	0.30	0.989602
2715	dm3.chr2L	21,482,265 – 21,482,320	- - - - - - - -	3725	21,482,265 – 21,482,320	+	9	56	72.90	-2.96	0.54	0.999415
2715	dm3.chr2L	21,482,265 – 21,482,320	- - - - - - - -	3726	21,482,265 – 21,482,320	-	9	56	72.90	-2.70	0.32	0.957902
2716	dm3.chr2L	21,490,339 – 21,490,412	- - - - - - - -	3727	21,490,339 – 21,490,412	+	10	81	62.29	-2.37	0.78	0.999785
2716	dm3.chr2L	21,490,339 – 21,490,412	- - - - - - - -	3728	21,490,339 – 21,490,412	-	10	81	62.29	-2.75	0.77	0.999880
2717	dm3.chr2L	21,497,866 – 21,497,921	- - - - - - - -	3729	21,497,866 – 21,497,921	+	11	70	58.18	-2.09	0.63	0.999855
2717	dm3.chr2L	21,497,866 – 21,497,921	- - - - - - - -	3730	21,497,866 – 21,497,921	-	11	70	58.18	-1.64	0.70	0.999595
2718	dm3.chr2L	21,502,543 – 21,502,634	- - - - - - - -	3731	21,502,543 – 21,502,634	+	9	92	68.61	-2.38	0.45	0.997136
2719	dm3.chr2L	21,502,919 – 21,502,974	- - - - - - - -	3732	21,502,919 – 21,502,974	+	11	70	58.69	-2.24	0.63	0.999888
2719	dm3.chr2L	21,502,919 – 21,502,974	- - - - - - - -	3733	21,502,919 – 21,502,974	-	11	70	58.69	-1.74	0.71	0.999648
2720	dm3.chr2L	21,507,964 – 21,508,019	- - - - - - - -	3734	21,507,964 – 21,508,019	+	11	66	57.48	-2.26	0.62	0.999927
2720	dm3.chr2L	21,507,964 – 21,508,019	- - - - - - - -	3735	21,507,964 – 21,508,019	-	11	66	57.48	-1.80	0.70	0.999792
2721	dm3.chr2L	21,513,008 – 21,513,063	- - - - - - - -	3736	21,513,008 – 21,513,063	+	11	66	57.00	-2.15	0.62	0.999910
2721	dm3.chr2L	21,513,008 – 21,513,063	- - - - - - - -	3737	21,513,008 – 21,513,063	-	11	66	57.00	-1.73	0.69	0.999768
2722	dm3.chr2L	21,522,584 – 21,522,674	- - - - - - - -	3738	21,522,584 – 21,522,674	+	12	110	56.59	-2.78	0.30	0.998537
2722	dm3.chr2L	21,522,584 – 21,522,674	- - - - - - - -	3739	21,522,584 – 21,522,674	-	12	110	56.59	-2.86	0.29	0.998597
2723	dm3.chr2L	21,527,405 – 21,527,510	- - - - - - - -	3740	21,527,405 – 21,527,510	+	11	117	63.10	-2.15	0.27	0.934282
2723	dm3.chr2L	21,527,405 – 21,527,510	- - - - - - - -	3741	21,527,405 – 21,527,510	-	11	117	63.10	-2.24	0.31	0.981098
2724	dm3.chr2L	21,553,821 – 21,553,877	- - - - - - - -	3742	21,553,821 – 21,553,877	+	3	56	51.79	-1.55	0.77	0.997992
2724	dm3.chr2L	21,553,821 – 21,553,877	- - - - - - - -	3743	21,553,821 – 21,553,877	-	3	56	51.79	-1.81	0.71	0.998997
2725	dm3.chr2L	21,556,897 – 21,557,048	- - - - - - - -	3744	21,556,897 – 21,556,988	-	5	92	57.61	-1.61	0.39	0.972864
2725	dm3.chr2L	21,556,897 – 21,557,048	- - - - - - - -	3745	21,556,988 – 21,557,048	-	5	64	51.30	-1.30	0.29	0.699714
2726	dm3.chr2L	21,611,585 – 21,611,689	- - - - - - - -	3746	21,611,585 – 21,611,689	-	3	124	61.36	-2.03	0.46	0.937950
2727	dm3.chr2L	21,640,807 – 21,640,903	- - CDS="CDS;ID=CDS_FBgn0023416:15_727;Name=Ac3-cds;Parent=FBtr0085897;parent_type=mRNA" - - - - -	3747	21,640,807 – 21,640,903	-	13	111	64.33	-1.29	0.38	0.854053
2728	dm3.chr2L	21,663,067 – 21,663,158	- - - - - - - -	3748	21,663,067 – 21,663,158	+	8	105	73.97	-1.91	0.41	0.648889
2728	dm3.chr2L	21,663,067 – 21,663,158	- - - - - - - -	3749	21,663,067 – 21,663,158	-	8	105	73.97	-2.44	0.40	0.920983
2729	dm3.chr2L	21,680,617 – 21,680,756	FBnoncoding="ncRNA;ID=FBtr0091693;Name=snmRNA:254-RA;Parent=FBgn0065100;Dbxref=FlyBase_Annotation_IDs:CR33705-RA,REFSEQ:NR_002539;score_text=Weakly" - - intron="intron;ID=intron_CG2238:3_CG2238:4;Name=Ef2b-in;Parent=FBtr0085911,FBtr0085912,FBtr0085913;parent_type=mRNA" - "Noncode_2.0=n3547_u3174_AJ544045_snmRNA_Drosophila\|1.9e-09" "unique_Noncode_2.0=u3174_snmRNA_Drosophila\|1.7e-09" -	3750	21,680,617 – 21,680,756	+	12	163	61.65	-1.55	0.29	0.792778
2729	dm3.chr2L	21,680,617 – 21,680,756		3751	21,680,617 – 21,680,756	-	12	163	61.65	-2.50	0.32	0.996443
2730	dm3.chr2L	21,681,338 – 21,681,567	- - CDS="CDS;ID=CDS_CG2238:2_735;Name=Ef2b-cds;Parent=FBtr0085911;parent_type=mRNA" - - - - -	3752	21,681,338 – 21,681,445	-	15	120	86.29	-1.35	0.79	0.665517
				3753	21,681,445 – 21,681,564	-	15	120	86.86	-2.51	0.72	0.975486
				3754	21,681,449 – 21,681,567	+	15	120	85.89	-2.33	0.49	0.607912
				3755	21,681,449 – 21,681,567	-	15	120	85.89	-2.67	0.72	0.988758
2731	dm3.chr2L	21,685,236 – 21,685,324	- - - intron="intron;ID=intron_FBgn0051619:1_FBgn0051619:2;Name=CG31619-in;Parent=FBtr0110959,FBtr0085902,FBtr0085901,FBtr0301000;parent_type=mRNA" - - - -	3756	21,685,236 – 21,685,324	+	4	102	59.17	-1.46	0.47	0.960408
2732	dm3.chr2L	21,702,653 – 21,702,791	- - - intron="intron;ID=intron_FBgn0051619:5_FBgn0051619:6;Name=CG31619-in;Parent=FBtr0110959,FBtr0085902,FBtr0085901,FBtr0301000;parent_type=mRNA" - - - -	3757	21,702,653 – 21,702,791	+	4	142	78.61	-1.85	0.60	0.708546
2732	dm3.chr2L	21,702,653 – 21,702,791		3758	21,702,653 – 21,702,791	-	4	142	78.61	-1.98	0.69	0.925142
2733	dm3.chr2L	21,708,043 – 21,708,164	- - - intron="intron;ID=intron_FBgn0051619:6_FBgn0051619:7;Name=CG31619-in;Parent=FBtr0110959,FBtr0085902,FBtr0085901,FBtr0301000;parent_type=mRNA" - - - -	3759	21,708,043 – 21,708,164	-	4	130	64.48	-1.53	0.37	0.510254
2734	dm3.chr2L	21,727,901 – 21,727,966	- - - intron="intron;ID=intron_FBgn0051619:20_FBgn0051619:21;Name=CG31619-in;Parent=FBtr0110959,FBtr0085901,FBtr0301000;parent_type=mRNA" - - - -	3760	21,727,901 – 21,727,966	-	4	68	62.72	-2.42	0.31	0.930197
2735	dm3.chr2L	21,738,294 – 21,738,397	- - - - - - - -	3761	21,738,294 – 21,738,393	+	3	101	60.87	-3.40	0.56	0.999739
				3762	21,738,294 – 21,738,393	-	3	101	60.87	-3.31	0.57	0.999705
				3763	21,738,298 – 21,738,397	+	3	99	58.45	-3.29	0.58	0.999837
				3764	21,738,298 – 21,738,397	-	3	99	58.45	-3.07	0.59	0.999762
2736	dm3.chr2L	21,756,881 – 21,756,983	- - - intron="intron;ID=intron_FBgn0086779:13_FBgn0086779:12;Name=step-in;Parent=FBtr0085910;parent_type=mRNA" - - - -	3765	21,756,881 – 21,756,983	+	3	102	79.43	-1.13	0.86	0.602626
2737	dm3.chr2L	21,768,066 – 21,768,131	- - - intron="intron;ID=intron_FBgn0051612:3_FBgn0051612:2;Name=CG31612-in;Parent=FBtr0085908,FBtr0300999;parent_type=mRNA" - - - -	3766	21,768,066 – 21,768,131	+	9	73	81.62	-1.55	0.66	0.630947
2738	dm3.chr2L	21,771,368 – 21,771,472	- - - intron="intron;ID=intron_FBgn0051612:3_FBgn0051612:2;Name=CG31612-in;Parent=FBtr0085908,FBtr0300999;parent_type=mRNA" - - - -	3767	21,771,368 – 21,771,472	+	8	115	73.55	-1.18	0.60	0.789505
2739	dm3.chr2L	21,779,421 – 21,779,477	- - - intron="intron;ID=intron_FBgn0051612:4_FBgn0051612:3;Name=CG31612-in;Parent=FBtr0300999;parent_type=mRNA" - - - -	3768	21,779,421 – 21,779,477	-	12	58	91.04	-1.54	0.81	0.543100
2740	dm3.chr2L	21,783,703 – 21,783,810	- - CDS="CDS;ID=CDS_CG11630:1_717;Name=CG11630-cds;Parent=FBtr0085909;parent_type=mRNA" intron="intron;ID=intron_FBgn0051612:4_FBgn0051612:3;Name=CG31612-in;Parent=FBtr0300999;parent_type=mRNA" - - - -	3769	21,783,703 – 21,783,804	+	8	103	60.88	-1.84	0.34	0.971032
2740	dm3.chr2L	21,783,703 – 21,783,810		3770	21,783,709 – 21,783,810	+	8	103	62.24	-1.83	0.34	0.959463
2741	dm3.chr2L	21,787,406 – 21,787,521	- - - intron="intron;ID=intron_FBgn0051612:4_FBgn0051612:3;Name=CG31612-in;Parent=FBtr0300999;parent_type=mRNA" - - - -	3771	21,787,406 – 21,787,521	+	6	115	83.83	-2.44	0.73	0.978231
2742	dm3.chr2L	21,801,727 – 21,801,821	- - - - - - - -	3772	21,801,727 – 21,801,821	+	9	96	78.81	-2.05	0.56	0.948743
2743	dm3.chr2L	21,804,327 – 21,804,419	- - - - - - - -	3773	21,804,327 – 21,804,419	-	12	116	87.10	-1.71	0.77	0.711724
2744	dm3.chr2L	21,804,551 – 21,804,641	- - - - - - - -	3774	21,804,551 – 21,804,641	+	7	103	70.90	-1.58	0.46	0.731057
2745	dm3.chr2L	21,815,909 – 21,815,971	- - - - - - - -	3775	21,815,909 – 21,815,971	-	6	64	76.49	-1.76	0.56	0.851241
2746	dm3.chr2L	21,823,020 – 21,823,131	- - - - - - - -	3776	21,823,020 – 21,823,131	+	12	120	93.00	-2.02	0.77	0.651234
2746	dm3.chr2L	21,823,020 – 21,823,131	- - - - - - - -	3777	21,823,020 – 21,823,131	-	12	120	93.00	-3.32	0.83	0.994230
2747	dm3.chr2L	21,833,647 – 21,833,738	- - CDS="CDS;ID=CDS_CG1374:2_747;Name=tsh-cds;Parent=FBtr0085907;parent_type=mRNA" - - - - -	3778	21,833,647 – 21,833,738	+	7	91	74.31	-1.15	0.57	0.792331
2748	dm3.chr2L	21,838,966 – 21,839,082	- - - - - - - -	3779	21,838,966 – 21,839,056	-	12	111	65.09	-2.10	0.33	0.957139
2748	dm3.chr2L	21,838,966 – 21,839,082	- - - - - - - -	3780	21,838,988 – 21,839,082	-	12	112	65.61	-1.52	0.31	0.625267
2749	dm3.chr2L	21,865,412 – 21,865,505	- - - - - - - -	3781	21,865,412 – 21,865,505	+	4	105	68.21	-1.65	0.43	0.553049
2750	dm3.chr2L	21,876,188 – 21,876,282	- - - - - - - -	3782	21,876,188 – 21,876,282	+	11	115	71.17	-1.87	0.42	0.917702
2751	dm3.chr2L	21,894,280 – 21,894,332	- - - - - - - -	3783	21,894,280 – 21,894,332	-	6	52	92.56	-1.30	1.06	0.970528
2752	dm3.chr2L	21,920,850 – 21,920,954	- - - - - - - -	3784	21,920,850 – 21,920,954	-	11	106	79.84	-1.97	0.44	0.622335
2753	dm3.chr2L	21,925,992 – 21,926,087	- - - - - - - -	3785	21,925,992 – 21,926,087	+	11	113	70.62	-0.91	0.54	0.781658
2753	dm3.chr2L	21,925,992 – 21,926,087	- - - - - - - -	3786	21,925,992 – 21,926,087	-	11	113	70.62	-0.64	0.65	0.844678
2754	dm3.chr2L	21,926,993 – 21,927,088	- - - - - - - -	3787	21,926,993 – 21,927,088	+	12	115	70.50	-1.54	0.48	0.924078
2755	dm3.chr2L	21,937,926 – 21,938,030	- - - - - - - -	3788	21,937,926 – 21,938,030	+	12	120	71.29	-1.68	0.52	0.962039
2756	dm3.chr2L	21,938,057 – 21,938,174	- - - - - - - -	3789	21,938,057 – 21,938,174	+	6	118	82.01	-1.29	0.76	0.594498
2756	dm3.chr2L	21,938,057 – 21,938,174	- - - - - - - -	3790	21,938,057 – 21,938,174	-	6	118	82.01	-1.80	0.69	0.793282
2757	dm3.chr2L	21,953,256 – 21,953,346	- - - - - - - -	3791	21,953,256 – 21,953,346	-	7	99	75.88	-1.78	0.63	0.964805
2758	dm3.chr2L	21,956,137 – 21,956,232	- - - - - - - -	3792	21,956,137 – 21,956,232	+	6	111	54.34	-0.94	0.41	0.776178
2759	dm3.chr2L	21,962,306 – 21,962,364	- - - - - - - -	3793	21,962,306 – 21,962,364	+	8	64	66.08	-0.91	0.46	0.607162
2760	dm3.chr2L	21,962,520 – 21,962,611	- - - - - - - -	3794	21,962,520 – 21,962,611	-	9	99	70.81	-1.67	0.66	0.995113
2761	dm3.chr2L	21,973,402 – 21,973,530	- - - - - - - -	3795	21,973,402 – 21,973,530	-	11	139	73.15	-2.08	0.39	0.902186
2762	dm3.chr2L	21,976,401 – 21,976,504	- - - - - - - -	3796	21,976,401 – 21,976,501	+	11	110	84.12	-3.04	0.52	0.971943
				3797	21,976,401 – 21,976,501	-	11	110	84.12	-2.64	0.63	0.972541
				3798	21,976,406 – 21,976,504	+	11	110	85.90	-2.60	0.55	0.844430
				3799	21,976,406 – 21,976,504	-	11	110	85.90	-1.86	0.67	0.645735
2763	dm3.chr2L	21,990,350 – 21,990,415	- - - intron="intron;ID=intron_FBgn0032969:2_FBgn0032969:1;Name=CG2528-in;Parent=FBtr0300121;parent_type=mRNA" - - - -	3800	21,990,350 – 21,990,415	+	3	65	57.95	-0.97	0.77	0.973565
2763	dm3.chr2L	21,990,350 – 21,990,415		3801	21,990,350 – 21,990,415	-	3	65	57.95	-1.30	0.55	0.946643
2764	dm3.chr2L	22,000,071 – 22,000,163	- - - - - - - -	3802	22,000,071 – 22,000,163	+	8	104	87.06	-1.87	0.73	0.692797
2765	dm3.chr2L	22,011,952 – 22,012,031	- - - - - - - -	3803	22,011,952 – 22,012,031	-	5	93	62.79	-1.97	0.32	0.788747
2766	dm3.chr2L	22,027,352 – 22,027,450	- - - - - - - -	3804	22,027,352 – 22,027,450	+	4	99	83.42	-1.59	0.74	0.588360
2767	dm3.chr2L	22,029,412 – 22,029,493	- - - - - - - -	3805	22,029,412 – 22,029,493	-	3	85	89.80	-1.55	0.84	0.528294
2768	dm3.chr2L	22,035,555 – 22,035,650	- - - - - - - -	3806	22,035,555 – 22,035,650	-	9	117	78.55	-1.49	0.64	0.825750
2769	dm3.chr2L	22,043,106 – 22,043,160	- - - - - - - -	3807	22,043,106 – 22,043,160	+	4	54	86.11	-1.39	0.83	0.608076
2770	dm3.chr2L	22,043,686 – 22,043,805	- - - - - - - -	3808	22,043,686 – 22,043,805	+	4	120	84.92	-2.13	0.67	0.726603
2771	dm3.chr2L	22,054,552 – 22,054,606	- - - - - - - -	3809	22,054,552 – 22,054,606	-	5	63	71.43	-1.52	0.46	0.635557
2772	dm3.chr2L	22,070,070 – 22,070,194	- - - - - - - -	3810	22,070,070 – 22,070,169	-	9	110	88.55	-1.21	0.85	0.529501
2772	dm3.chr2L	22,070,070 – 22,070,194	- - - - - - - -	3811	22,070,077 – 22,070,194	-	11	120	83.55	-1.42	0.68	0.613682
2773	dm3.chr2L	22,072,674 – 22,072,745	- - - - - - - -	3812	22,072,674 – 22,072,745	+	3	71	77.00	-1.23	0.79	0.557877
2774	dm3.chr2L	22,078,989 – 22,079,095	- - - - - - - -	3813	22,078,989 – 22,079,095	+	3	108	53.27	-4.02	0.01	0.816786
2774	dm3.chr2L	22,078,989 – 22,079,095	- - - - - - - -	3814	22,078,989 – 22,079,095	-	3	108	53.27	-4.45	0.02	0.949036
2775	dm3.chr2L	22,093,174 – 22,093,231	- - - - - - - -	3815	22,093,174 – 22,093,231	+	3	62	82.42	-1.17	0.99	0.910622
2776	dm3.chr2L	22,105,091 – 22,105,224	- - CDS="CDS;ID=CDS_FBgn0040519:3_868;Name=CG15219-cds;Parent=FBtr0085944,FBtr0306060;parent_type=mRNA" - - - - -	3816	22,105,091 – 22,105,182	+	12	104	66.25	-1.38	0.36	0.828957
2776	dm3.chr2L	22,105,091 – 22,105,224		3817	22,105,115 – 22,105,224	+	12	120	66.95	-1.44	0.34	0.668712
2777	dm3.chr2L	22,148,870 – 22,148,927	- - - intron="intron;ID=intron_FBgn0261802:6_FBgn0261802:8;Name=CG42748-in;Parent=FBtr0303271,FBtr0303272,FBtr0303273,FBtr0303277;parent_type=mRNA" - - - -	3818	22,148,870 – 22,148,927	+	5	57	75.96	-2.12	0.53	0.918808
2777	dm3.chr2L	22,148,870 – 22,148,927		3819	22,148,870 – 22,148,927	-	5	57	75.96	-1.23	0.61	0.545969
2778	dm3.chr2L	22,172,839 – 22,172,918	- - - - - - - -	3820	22,172,839 – 22,172,918	+	3	82	59.92	-2.13	0.52	0.986426
2778	dm3.chr2L	22,172,839 – 22,172,918	- - - - - - - -	3821	22,172,839 – 22,172,918	-	3	82	59.92	-1.66	0.44	0.774559
2779	dm3.chr2L	22,269,834 – 22,269,944	- - - - - - - -	3822	22,269,834 – 22,269,944	+	7	110	68.13	-1.77	0.54	0.990190
2779	dm3.chr2L	22,269,834 – 22,269,944	- - - - - - - -	3823	22,269,834 – 22,269,944	-	7	110	68.13	-2.30	0.64	0.999164
2780	dm3.chr2L	22,272,586 – 22,272,660	- - - - - - - -	3824	22,272,586 – 22,272,660	-	7	81	79.70	-1.18	0.74	0.740231
2781	dm3.chr2L	22,273,538 – 22,273,633	- - - - - - - -	3825	22,273,538 – 22,273,633	-	10	114	49.96	-1.35	0.34	0.961739
2782	dm3.chr2L	22,318,066 – 22,318,178	- - - intron="intron;ID=intron_FBgn0039972:2_FBgn0039972:3;Name=CG17018-in;Parent=FBtr0306235;parent_type=mRNA" - - - -	3826	22,318,066 – 22,318,178	+	3	112	82.74	-1.99	0.82	0.935832
2782	dm3.chr2L	22,318,066 – 22,318,178		3827	22,318,066 – 22,318,178	-	3	112	82.74	-2.36	0.79	0.968726
2783	dm3.chr2L	22,340,562 – 22,340,629	- - - intron="intron;ID=intron_FBgn0039972:3_FBgn0039972:7;Name=CG17018-in;Parent=FBtr0306235;parent_type=mRNA" - - - -	3828	22,340,562 – 22,340,629	-	4	67	48.97	-0.47	0.58	0.961391
2784	dm3.chr2L	22,359,123 – 22,359,274	- - - intron="intron;ID=intron_FBgn0039972:7_FBgn0039972:8;Name=CG17018-in;Parent=FBtr0306235;parent_type=mRNA" - - - -	3829	22,359,123 – 22,359,274	-	4	152	51.83	-1.81	0.33	0.953655
2785	dm3.chr2L	22,359,580 – 22,359,660	- - - intron="intron;ID=intron_FBgn0039972:7_FBgn0039972:8;Name=CG17018-in;Parent=FBtr0306235;parent_type=mRNA" - - - -	3830	22,359,580 – 22,359,660	+	4	80	56.33	-0.83	0.56	0.958109
2785	dm3.chr2L	22,359,580 – 22,359,660		3831	22,359,580 – 22,359,660	-	4	80	56.33	-2.87	0.63	0.999922
2786	dm3.chr2L	22,363,221 – 22,363,290	- - - intron="intron;ID=intron_FBgn0039972:7_FBgn0039972:8;Name=CG17018-in;Parent=FBtr0306235;parent_type=mRNA" - - - -	3832	22,363,221 – 22,363,290	-	3	69	73.10	-1.35	0.76	0.763084
2787	dm3.chr2L	22,376,604 – 22,376,666	- - - - - - - -	3833	22,376,604 – 22,376,666	+	4	62	69.04	-2.38	0.73	0.997838
2788	dm3.chr2L	22,393,015 – 22,393,074	- - - - - - - -	3834	22,393,015 – 22,393,074	+	5	59	84.24	-1.77	0.69	0.648243
2788	dm3.chr2L	22,393,015 – 22,393,074	- - - - - - - -	3835	22,393,015 – 22,393,074	-	5	59	84.24	-3.17	0.85	0.997681
2789	dm3.chr2L	22,393,473 – 22,393,658	- - - - "Rfam_10.0=RF00524;R2_retro_el;AABU01002463.1/35801-35987\|1.2e-54" - - -	3836	22,393,473 – 22,393,658	-	4	192	54.27	-1.17	0.38	0.757072
2790	dm3.chr2L	22,406,996 – 22,407,112	- - - - - - - -	3837	22,406,996 – 22,407,112	-	5	122	53.44	-1.27	0.29	0.627778
2791	dm3.chr2L	22,407,571 – 22,407,688	- - - - - - - -	3838	22,407,571 – 22,407,673	+	5	106	78.56	-1.70	0.64	0.779063
				3839	22,407,584 – 22,407,688	+	4	107	72.18	-1.72	0.66	0.942748
				3840	22,407,584 – 22,407,688	-	4	107	72.18	-1.25	0.62	0.651363
2792	dm3.chr2L	22,407,806 – 22,407,924	- - - - - - - -	3841	22,407,806 – 22,407,924	+	5	118	67.63	-1.45	0.55	0.955206
2792	dm3.chr2L	22,407,806 – 22,407,924	- - - - - - - -	3842	22,407,806 – 22,407,924	-	5	118	67.63	-2.45	0.57	0.998595
2793	dm3.chr2L	22,411,986 – 22,412,129	- - - - - - - -	3843	22,411,986 – 22,412,129	+	5	172	72.16	-1.82	0.60	0.974106
2793	dm3.chr2L	22,411,986 – 22,412,129	- - - - - - - -	3844	22,411,986 – 22,412,129	-	5	172	72.16	-3.72	0.56	0.999762
2794	dm3.chr2L	22,414,766 – 22,414,904	- - - - - - - -	3845	22,414,766 – 22,414,864	+	5	120	70.18	-2.72	0.59	0.998666
				3846	22,414,766 – 22,414,864	-	5	120	70.18	-3.07	0.63	0.999535
				3847	22,414,784 – 22,414,904	+	5	120	80.17	-1.62	0.66	0.737379
				3848	22,414,784 – 22,414,904	-	5	120	80.17	-3.08	0.70	0.997407
2795	dm3.chr2L	22,415,346 – 22,415,461	- - - - - - - -	3849	22,415,346 – 22,415,461	+	3	115	91.30	-1.56	0.88	0.663154
2796	dm3.chr2L	22,427,527 – 22,427,677	- - - - - - - -	3850	22,427,527 – 22,427,677	-	13	172	65.44	-2.44	0.27	0.961551
2797	dm3.chr2L	22,438,761 – 22,438,874	- - - - - - - -	3851	22,438,761 – 22,438,874	+	5	117	84.89	-1.80	0.70	0.640591
2797	dm3.chr2L	22,438,761 – 22,438,874	- - - - - - - -	3852	22,438,761 – 22,438,874	-	5	117	84.89	-3.03	0.80	0.995464
2798	dm3.chr2L	22,440,735 – 22,440,890	- - - - - - - -	3853	22,440,735 – 22,440,855	-	5	120	75.27	-2.17	0.53	0.934698
2798	dm3.chr2L	22,440,735 – 22,440,890	- - - - - - - -	3854	22,440,775 – 22,440,890	-	5	120	76.96	-2.82	0.58	0.991359
2799	dm3.chr2L	22,453,178 – 22,453,238	- - - - - - - -	3855	22,453,178 – 22,453,238	-	4	64	49.05	-1.05	0.49	0.982503
2800	dm3.chr2L	22,463,501 – 22,463,569	- - - - - - - -	3856	22,463,501 – 22,463,569	+	3	75	62.22	-2.21	0.75	0.997980
2800	dm3.chr2L	22,463,501 – 22,463,569	- - - - - - - -	3857	22,463,501 – 22,463,569	-	3	75	62.22	-1.75	0.46	0.876832
2801	dm3.chr2L	22,469,030 – 22,469,167	- - - - - - - -	3858	22,469,030 – 22,469,134	-	6	111	69.99	-1.80	0.35	0.610005
				3859	22,469,059 – 22,469,161	+	6	102	72.92	-1.25	0.57	0.836910
				3860	22,469,059 – 22,469,161	-	6	102	72.92	-1.60	0.58	0.953693
				3861	22,469,065 – 22,469,167	+	6	102	73.71	-1.89	0.61	0.982600
				3862	22,469,065 – 22,469,167	-	6	102	73.71	-2.62	0.69	0.998733
2802	dm3.chr2L	22,469,621 – 22,469,735	- - - - - - - -	3863	22,469,621 – 22,469,735	+	4	114	84.03	-1.52	0.82	0.773534
2802	dm3.chr2L	22,469,621 – 22,469,735	- - - - - - - -	3864	22,469,621 – 22,469,735	-	4	114	84.03	-2.59	0.88	0.992934
2803	dm3.chr2L	22,471,201 – 22,471,323	- - - - - - - -	3865	22,471,201 – 22,471,323	+	5	130	71.72	-3.14	0.40	0.992900
2803	dm3.chr2L	22,471,201 – 22,471,323	- - - - - - - -	3866	22,471,201 – 22,471,323	-	5	130	71.72	-3.85	0.33	0.996860
2804	dm3.chr2L	22,487,122 – 22,487,240	- - - - - - - -	3867	22,487,122 – 22,487,240	+	4	118	64.97	-1.41	0.46	0.783499
2804	dm3.chr2L	22,487,122 – 22,487,240	- - - - - - - -	3868	22,487,122 – 22,487,240	-	4	118	64.97	-1.94	0.38	0.848717
2805	dm3.chr2L	22,490,044 – 22,490,148	- - - - - - - -	3869	22,490,044 – 22,490,148	+	3	107	51.12	-1.08	0.40	0.594883
2805	dm3.chr2L	22,490,044 – 22,490,148	- - - - - - - -	3870	22,490,044 – 22,490,148	-	3	107	51.12	-1.17	0.40	0.679084
2806	dm3.chr2L	22,490,227 – 22,490,347	- - - - - - - -	3871	22,490,227 – 22,490,347	+	4	120	60.42	-1.48	0.38	0.809742
2807	dm3.chr2L	22,508,205 – 22,508,298	- - - - - - - -	3872	22,508,205 – 22,508,298	+	3	105	64.82	-0.61	0.77	0.657030
2808	dm3.chr2L	22,515,937 – 22,515,990	- - - intron="intron;ID=intron_CG40006:535457-534886_CG40006:514460-514174;Name=CG40006-in;Parent=FBtr0111230;parent_type=mRNA" - - - -	3873	22,515,937 – 22,515,990	+	4	59	66.09	-0.88	0.76	0.918299
2809	dm3.chr2L	22,516,467 – 22,516,551	- - - intron="intron;ID=intron_CG40006:535457-534886_CG40006:514460-514174;Name=CG40006-in;Parent=FBtr0111230;parent_type=mRNA" - - - -	3874	22,516,467 – 22,516,551	+	3	86	60.94	-1.12	0.48	0.574282
2810	dm3.chr2L	22,525,751 – 22,525,813	- - - intron="intron;ID=intron_CG40006:535457-534886_CG40006:514460-514174;Name=CG40006-in;Parent=FBtr0111230;parent_type=mRNA" - - - -	3875	22,525,751 – 22,525,813	-	3	62	56.18	-0.47	0.65	0.643149
2811	dm3.chr2L	22,528,542 – 22,528,699	- - - intron="intron;ID=intron_CG40006:535457-534886_CG40006:514460-514174;Name=CG40006-in;Parent=FBtr0111230;parent_type=mRNA" - - - -	3876	22,528,542 – 22,528,660	-	4	120	89.54	-2.52	0.73	0.891920
				3877	22,528,581 – 22,528,695	+	4	120	86.39	-2.09	0.77	0.872759
				3878	22,528,581 – 22,528,695	-	4	120	86.39	-2.88	0.73	0.980062
				3879	22,528,584 – 22,528,699	+	4	120	88.06	-2.32	0.73	0.853677
				3880	22,528,584 – 22,528,699	-	4	120	88.06	-2.47	0.74	0.917268
2812	dm3.chr2L	22,552,063 – 22,552,113	- - - intron="intron;ID=intron_CG40006:567847-567681_CG40006:535639-535514;Name=CG40006-in;Parent=FBtr0111230;parent_type=mRNA" - - - -	3881	22,552,063 – 22,552,113	-	3	50	76.00	-2.14	0.62	0.866304
2813	dm3.chr2L	22,573,991 – 22,574,046	- - - intron="intron;ID=intron_CG40006:579880-579763_CG40006:567847-567681;Name=CG40006-in;Parent=FBtr0111230;parent_type=mRNA" - - - -	3882	22,573,991 – 22,574,046	+	3	58	60.82	-1.73	0.40	0.671506
2814	dm3.chr2L	22,644,198 – 22,644,258	- - - intron="intron;ID=intron_CG40006:648106-647614_CG40006:610732-610641;Name=CG40006-in;Parent=FBtr0111230;parent_type=mRNA" - - - -	3883	22,644,198 – 22,644,258	-	4	71	64.63	-1.21	0.59	0.857898
2815	dm3.chr2L	22,674,998 – 22,675,080	- - - - - - - -	3884	22,674,998 – 22,675,080	+	3	82	62.20	-1.49	0.43	0.560511
2816	dm3.chr2L	22,770,310 – 22,770,361	- - - - - - - -	3885	22,770,310 – 22,770,361	+	4	61	62.15	-0.35	0.60	0.500000
2817	dm3.chr2L	22,774,693 – 22,774,754	- - - - - - - -	3886	22,774,693 – 22,774,754	-	3	62	88.17	-2.25	0.78	0.858180
2818	dm3.chr2L	22,783,526 – 22,783,628	- - - - - - - -	3887	22,783,526 – 22,783,628	+	9	102	54.85	-0.74	0.40	0.884779
2819	dm3.chr2L	22,909,909 – 22,909,999	- - - intron="intron;ID=intron_CG18140:916981-916927_CG18140:907847-907795;Name=Cht3-in;Parent=FBtr0111127;parent_type=mRNA" - - - -	3888	22,909,909 – 22,909,999	+	4	90	75.93	-1.43	0.64	0.645908
2820	dm3.chr2L	22,923,871 – 22,923,926	- - - - - - - -	3889	22,923,871 – 22,923,926	+	5	57	76.30	-1.35	0.70	0.800864
2820	dm3.chr2L	22,923,871 – 22,923,926	- - - - - - - -	3890	22,923,871 – 22,923,926	-	5	57	76.30	-1.25	0.75	0.827229
2821	dm3.chr2L	22,971,243 – 22,971,317	- - - - - - - -	3891	22,971,243 – 22,971,317	+	3	74	73.76	-2.12	0.54	0.770415
2822	dm3.chr2L	22,984,631 – 22,984,751	- - - - - - - -	3892	22,984,631 – 22,984,751	+	4	120	60.24	-2.75	0.25	0.922049
2823	dm3.chr2L	22,985,063 – 22,985,183	- - - - - - - -	3893	22,985,063 – 22,985,161	-	3	112	60.30	-2.97	0.55	0.999442
2823	dm3.chr2L	22,985,063 – 22,985,183	- - - - - - - -	3894	22,985,074 – 22,985,183	-	3	112	55.56	-2.45	0.48	0.998277
2824	dm3.chr2RHet	19,079 – 19,130	- - - - - - - -	3895	19,079 – 19,130	-	5	55	81.82	-1.42	0.71	0.602463
2825	dm3.chr2RHet	30,301 – 30,407	- - - - - - - -	3896	30,301 – 30,407	-	5	120	63.17	-2.54	0.25	0.826140
2826	dm3.chr2RHet	62,330 – 62,481	FBnoncoding="ncRNA;ID=FBtr0114247;Name=CR41510-RB;Parent=FBgn0085793;Dbxref=FlyBase_Annotation_IDs:CR41510-RB,REFSEQ:NR_004353;score_text=Weakly" - - - - - - -	3897	62,330 – 62,481	+	4	158	61.43	-1.33	0.38	0.532892
2827	dm3.chr2RHet	65,906 – 66,014	FBnoncoding="ncRNA;ID=FBtr0114247;Name=CR41510-RB;Parent=FBgn0085793;Dbxref=FlyBase_Annotation_IDs:CR41510-RB,REFSEQ:NR_004353;score_text=Weakly" - - - - - - -	3898	65,906 – 66,013	+	5	107	66.86	-1.58	0.48	0.930741
				3899	65,906 – 66,013	-	5	107	66.86	-1.65	0.40	0.787897
				3900	65,908 – 66,014	+	5	106	66.44	-1.61	0.49	0.950312
				3901	65,908 – 66,014	-	5	106	66.44	-1.62	0.41	0.820003
2828	dm3.chr2RHet	80,044 – 80,224	- - - - - - - -	3902	80,044 – 80,101	+	4	57	63.45	-1.51	0.40	0.744846
				3903	80,101 – 80,224	+	6	123	62.96	-1.77	0.55	0.998113
				3904	80,101 – 80,224	-	6	123	62.96	-1.82	0.55	0.998386
2829	dm3.chr2RHet	80,753 – 80,865	- - - - - - - -	3905	80,753 – 80,865	+	5	119	72.39	-2.57	0.58	0.995143
2830	dm3.chr2RHet	87,736 – 87,789	- - - - - - - -	3906	87,736 – 87,789	-	5	53	66.98	-1.85	0.60	0.994695
2831	dm3.chr2RHet	133,719 – 133,834	- - - - - - - -	3907	133,719 – 133,834	+	5	120	73.27	-1.54	0.52	0.588361
2832	dm3.chr2RHet	153,513 – 153,629	- - - - - - - -	3908	153,513 – 153,629	+	3	116	52.30	-2.20	0.27	0.872027
2833	dm3.chr2RHet	160,130 – 160,227	- - - - - - - -	3909	160,130 – 160,227	+	3	98	63.14	-2.44	0.33	0.828192
2833	dm3.chr2RHet	160,130 – 160,227	- - - - - - - -	3910	160,130 – 160,227	-	3	98	63.14	-2.37	0.43	0.964197
2834	dm3.chr2RHet	163,205 – 163,282	- - - - - - - -	3911	163,205 – 163,282	+	4	95	54.44	-1.39	0.45	0.950006
2835	dm3.chr2RHet	246,627 – 246,712	- - - intron="intron;ID=intron_CG12559:240251-240439_CG12559:247339-247809;Name=rl-in;Parent=FBtr0113698,FBtr0113702,FBtr0113703;parent_type=mRNA" - - - -	3912	246,627 – 246,712	+	5	88	64.77	-0.45	0.54	0.500000
2836	dm3.chr2RHet	250,379 – 250,474	- - - - - - - -	3913	250,379 – 250,474	-	6	117	52.90	-1.57	0.41	0.990134
2837	dm3.chr2RHet	250,917 – 251,078	- - - - - - - -	3914	250,917 – 251,078	+	4	171	66.43	-1.49	0.50	0.826615
2838	dm3.chr2RHet	353,810 – 353,925	- - - - - - - -	3915	353,810 – 353,925	-	5	120	79.83	-3.49	0.63	0.998381
2839	dm3.chr2RHet	386,069 – 386,123	- - - - - - - -	3916	386,069 – 386,123	-	3	54	54.32	-0.67	0.54	0.787164
2840	dm3.chr2RHet	404,483 – 404,533	- - - - - - - -	3917	404,483 – 404,533	+	3	50	55.33	-0.35	0.57	0.565057
2840	dm3.chr2RHet	404,483 – 404,533	- - - - - - - -	3918	404,483 – 404,533	-	3	50	55.33	-1.50	0.92	0.993365
2841	dm3.chr2RHet	404,830 – 405,025	- - - - - - - -	3919	404,830 – 404,965	+	3	149	61.89	-2.97	0.40	0.990568
2841	dm3.chr2RHet	404,830 – 405,025	- - - - - - - -	3920	404,965 – 405,025	+	3	63	52.69	-2.42	0.43	0.996957
2842	dm3.chr2RHet	412,114 – 412,165	- - - - - - - -	3921	412,114 – 412,165	+	3	51	96.08	-1.82	0.95	0.909155
2842	dm3.chr2RHet	412,114 – 412,165	- - - - - - - -	3922	412,114 – 412,165	-	3	51	96.08	-1.88	0.85	0.602515
2843	dm3.chr2RHet	435,282 – 435,367	- - - - - - - -	3923	435,282 – 435,367	-	3	85	84.46	-1.67	0.82	0.749769
2844	dm3.chr2RHet	449,756 – 449,860	- - - - - - - -	3924	449,756 – 449,860	+	4	116	71.26	-1.19	0.59	0.678027
2845	dm3.chr2RHet	506,079 – 506,186	- - - intron="intron;ID=intron_CG41265:495100-495242_CG41265:564467-565026;Name=l(2)41Ab-in;Parent=FBtr0114030,FBtr0114029;parent_type=mRNA" - - - -	3925	506,079 – 506,186	-	4	110	65.89	-1.83	0.39	0.730436
2846	dm3.chr2RHet	513,516 – 513,632	- - - intron="intron;ID=intron_CG41265:495100-495242_CG41265:564467-565026;Name=l(2)41Ab-in;Parent=FBtr0114030,FBtr0114029;parent_type=mRNA" - - - -	3926	513,516 – 513,632	+	3	118	56.41	-1.28	0.45	0.788206
2847	dm3.chr2RHet	522,819 – 522,901	- - - intron="intron;ID=intron_CG41265:495100-495242_CG41265:564467-565026;Name=l(2)41Ab-in;Parent=FBtr0114030,FBtr0114029;parent_type=mRNA" - - - -	3927	522,819 – 522,901	-	3	95	69.50	-1.79	0.57	0.827327
2848	dm3.chr2RHet	545,132 – 545,244	- - - intron="intron;ID=intron_CG41265:495100-495242_CG41265:564467-565026;Name=l(2)41Ab-in;Parent=FBtr0114030,FBtr0114029;parent_type=mRNA" - - - -	3928	545,132 – 545,244	+	4	128	55.05	-0.66	0.53	0.872217
2848	dm3.chr2RHet	545,132 – 545,244		3929	545,132 – 545,244	-	4	128	55.05	-1.32	0.59	0.993970
2849	dm3.chr2RHet	558,213 – 558,314	- - - intron="intron;ID=intron_CG41265:495100-495242_CG41265:564467-565026;Name=l(2)41Ab-in;Parent=FBtr0114030,FBtr0114029;parent_type=mRNA" - - - -	3930	558,213 – 558,314	+	4	108	61.56	-1.49	0.46	0.940543
2850	dm3.chr2RHet	558,571 – 558,684	- - - intron="intron;ID=intron_CG41265:495100-495242_CG41265:564467-565026;Name=l(2)41Ab-in;Parent=FBtr0114030,FBtr0114029;parent_type=mRNA" - - - -	3931	558,571 – 558,684	+	4	114	71.05	-1.98	0.44	0.805920
2851	dm3.chr2RHet	565,819 – 565,904	- - - intron="intron;ID=intron_CG41265:565646-565790_CG41265:569402-569610;Name=l(2)41Ab-in;Parent=FBtr0114030,FBtr0114029;parent_type=mRNA" - - - -	3932	565,819 – 565,904	-	3	86	65.37	-1.76	0.53	0.920314
2852	dm3.chr2RHet	574,896 – 574,946	- - - - - - - -	3933	574,896 – 574,946	+	5	59	52.05	-1.20	0.30	0.500000
2853	dm3.chr2RHet	622,238 – 622,322	- - - intron="intron;ID=intron_FBgn0040017:5_FBgn0040017:4;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3934	622,238 – 622,322	-	4	88	47.14	-1.23	0.28	0.718249
2854	dm3.chr2RHet	627,499 – 627,613	- - - intron="intron;ID=intron_FBgn0040017:5_FBgn0040017:4;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3935	627,499 – 627,613	+	6	119	79.54	-1.16	0.68	0.519783
2854	dm3.chr2RHet	627,499 – 627,613		3936	627,499 – 627,613	-	6	119	79.54	-2.46	0.79	0.994744
2855	dm3.chr2RHet	630,539 – 630,630	- - - intron="intron;ID=intron_FBgn0040017:5_FBgn0040017:4;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3937	630,539 – 630,630	+	4	91	51.35	-3.02	0.55	0.999955
2855	dm3.chr2RHet	630,539 – 630,630		3938	630,539 – 630,630	-	4	91	51.35	-1.44	0.45	0.986386
2856	dm3.chr2RHet	728,042 – 728,105	- - - intron="intron;ID=intron_FBgn0040017:7_FBgn0040017:6;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3939	728,042 – 728,105	-	4	64	69.55	-2.22	0.44	0.924488
2857	dm3.chr2RHet	754,048 – 754,111	- - - intron="intron;ID=intron_FBgn0040017:10_FBgn0040017:9;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3940	754,048 – 754,111	+	4	76	78.63	-2.46	0.52	0.892246
2858	dm3.chr2RHet	756,903 – 756,954	- - - intron="intron;ID=intron_FBgn0040017:10_FBgn0040017:9;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3941	756,903 – 756,954	+	3	51	68.63	-1.67	0.73	0.966833
2858	dm3.chr2RHet	756,903 – 756,954		3942	756,903 – 756,954	-	3	51	68.63	-1.58	0.63	0.892562
2859	dm3.chr2RHet	864,395 – 864,508	- - - intron="intron;ID=intron_FBgn0040017:13_FBgn0040017:12;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3943	864,395 – 864,508	+	5	115	83.22	-2.56	0.50	0.771856
2860	dm3.chr2RHet	891,067 – 891,225	- - - intron="intron;ID=intron_FBgn0040017:13_FBgn0040017:12;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3944	891,067 – 891,155	+	4	88	85.34	-1.37	0.90	0.800262
2860	dm3.chr2RHet	891,067 – 891,225		3945	891,155 – 891,225	+	6	72	74.41	-1.74	0.43	0.624102
2861	dm3.chr2RHet	912,783 – 912,833	- - - intron="intron;ID=intron_FBgn0040017:13_FBgn0040017:12;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3946	912,783 – 912,833	-	3	53	53.85	-0.78	0.62	0.912577
2862	dm3.chr2RHet	939,803 – 939,909	- - - intron="intron;ID=intron_FBgn0040017:13_FBgn0040017:12;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3947	939,803 – 939,909	+	3	106	57.64	-1.68	0.36	0.677105
2863	dm3.chr2RHet	965,980 – 966,080	- - - intron="intron;ID=intron_FBgn0040017:13_FBgn0040017:12;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3948	965,980 – 966,080	+	3	100	82.00	-1.98	0.65	0.548519
2864	dm3.chr2RHet	966,119 – 966,183	- - - intron="intron;ID=intron_FBgn0040017:13_FBgn0040017:12;Name=CG17684-in;Parent=FBtr0300103;parent_type=mRNA" - - - -	3949	966,119 – 966,183	+	4	64	80.99	-2.08	0.55	0.577933
2865	dm3.chr2RHet	1,077,178 – 1,077,316	- - - - - - - -	3950	1,077,178 – 1,077,295	-	5	120	77.75	-2.58	0.69	0.992933
2865	dm3.chr2RHet	1,077,178 – 1,077,316	- - - - - - - -	3951	1,077,217 – 1,077,316	-	5	120	67.97	-1.30	0.65	0.921535
2866	dm3.chr2RHet	1,077,320 – 1,077,466	- - - - - - - -	3952	1,077,320 – 1,077,466	-	5	164	70.69	-1.87	0.57	0.959211
2867	dm3.chr2RHet	1,084,320 – 1,084,378	- - - - - - - -	3953	1,084,320 – 1,084,378	-	5	58	89.31	-2.35	0.75	0.889049
2868	dm3.chr2RHet	1,086,810 – 1,086,915	- - - - - - - -	3954	1,086,810 – 1,086,915	-	7	114	81.28	-0.97	0.79	0.543996
2869	dm3.chr2RHet	1,087,476 – 1,087,537	- - - - - - - -	3955	1,087,476 – 1,087,537	-	6	65	53.67	-0.01	0.48	0.552490
2870	dm3.chr2RHet	1,123,093 – 1,123,205	- - - - - - - -	3956	1,123,093 – 1,123,205	-	3	114	54.12	-1.25	0.37	0.544736
2871	dm3.chr2RHet	1,124,252 – 1,124,361	- - - - - - - -	3957	1,124,252 – 1,124,361	+	4	110	53.87	-1.73	0.28	0.801932
2872	dm3.chr2RHet	1,133,939 – 1,134,006	- - - - - - - -	3958	1,133,939 – 1,134,006	+	4	67	61.11	-1.80	0.38	0.898929
2873	dm3.chr2RHet	1,134,331 – 1,134,440	- - - - - - - -	3959	1,134,331 – 1,134,440	+	3	112	67.86	-2.06	0.59	0.961126
2874	dm3.chr2RHet	1,139,417 – 1,139,512	- - - - - - - -	3960	1,139,417 – 1,139,512	-	8	97	50.81	-1.86	0.21	0.932800
2875	dm3.chr2RHet	1,266,323 – 1,266,385	- - - intron="intron;ID=intron_FBgn0058263:2_FBgn0058263:1;Name=CG40263-in;Parent=FBtr0301780;parent_type=mRNA" - - - -	3961	1,266,323 – 1,266,385	+	3	63	53.72	-1.21	0.41	0.715628
2875	dm3.chr2RHet	1,266,323 – 1,266,385		3962	1,266,323 – 1,266,385	-	3	63	53.72	-1.38	0.35	0.555989
2876	dm3.chr2RHet	1,280,760 – 1,280,840	- - - intron="intron;ID=intron_FBgn0058263:2_FBgn0058263:1;Name=CG40263-in;Parent=FBtr0301780;parent_type=mRNA" - - - -	3963	1,280,760 – 1,280,840	+	6	80	62.15	-1.13	0.34	0.526392
2877	dm3.chr2RHet	1,290,443 – 1,290,534	- - - intron="intron;ID=intron_FBgn0058263:2_FBgn0058263:1;Name=CG40263-in;Parent=FBtr0301780;parent_type=mRNA" - - - "mirBase_v16=dme-mir-2490\|1.6e-21"	3964	1,290,443 – 1,290,534	-	7	100	62.43	-1.67	0.27	0.545429
2878	dm3.chr2RHet	1,309,582 – 1,309,651	- - - intron="intron;ID=intron_FBgn0058263:5_FBgn0058263:4;Name=CG40263-in;Parent=FBtr0301779,FBtr0301780,FBtr0301781;parent_type=mRNA" - - - -	3965	1,309,582 – 1,309,651	-	3	69	71.98	-1.57	0.57	0.567521
2879	dm3.chr2RHet	1,311,889 – 1,311,940	- - - intron="intron;ID=intron_FBgn0058263:5_FBgn0058263:4;Name=CG40263-in;Parent=FBtr0301779,FBtr0301780,FBtr0301781;parent_type=mRNA" - - - -	3966	1,311,889 – 1,311,940	+	4	51	60.98	-2.16	0.35	0.947850
2880	dm3.chr2RHet	1,383,531 – 1,383,674	- - - - - - - -	3967	1,383,531 – 1,383,674	-	4	143	86.95	-1.47	0.85	0.705462
2881	dm3.chr2RHet	1,396,503 – 1,396,561	- - - - - - - -	3968	1,396,503 – 1,396,561	+	4	58	96.55	-2.89	0.81	0.944862
2881	dm3.chr2RHet	1,396,503 – 1,396,561	- - - - - - - -	3969	1,396,503 – 1,396,561	-	4	58	96.55	-3.10	0.87	0.985899
2882	dm3.chr2RHet	1,404,972 – 1,405,117	- - - - - - - -	3970	1,404,972 – 1,405,117	+	4	145	94.48	-3.23	0.82	0.986113
2882	dm3.chr2RHet	1,404,972 – 1,405,117	- - - - - - - -	3971	1,404,972 – 1,405,117	-	4	145	94.48	-1.32	0.92	0.600749
2883	dm3.chr2RHet	1,416,414 – 1,416,477	- - - - - - - -	3972	1,416,414 – 1,416,477	-	3	63	69.44	-1.20	0.75	0.784661
2884	dm3.chr2RHet	1,482,653 – 1,482,771	- - - - - - - -	3973	1,482,653 – 1,482,768	+	3	115	56.81	-1.80	0.49	0.976414
				3974	1,482,653 – 1,482,768	-	3	115	56.81	-1.49	0.47	0.905071
				3975	1,482,657 – 1,482,771	+	3	114	57.02	-1.70	0.51	0.974215
				3976	1,482,657 – 1,482,771	-	3	114	57.02	-1.40	0.48	0.885132
2885	dm3.chr2RHet	1,552,681 – 1,552,750	- - - intron="intron;ID=intron_FBgn0085638:2_FBgn0085638:1;Name=CG41378-in;Parent=FBtr0301790,FBtr0301791,FBtr0301792;parent_type=mRNA" - - - -	3977	1,552,681 – 1,552,750	+	3	80	56.17	-1.36	0.52	0.948156
2886	dm3.chr2RHet	1,631,541 – 1,631,619	- - - - - - - -	3978	1,631,541 – 1,631,619	-	3	88	85.61	-1.68	0.76	0.506054
2887	dm3.chr2RHet	1,640,080 – 1,640,137	- - - - - - - -	3979	1,640,080 – 1,640,137	-	3	66	83.33	-1.60	0.88	0.879690
2888	dm3.chr2RHet	1,649,658 – 1,649,740	- - - - - - - -	3980	1,649,658 – 1,649,740	+	4	90	80.52	-1.75	0.86	0.958619
2888	dm3.chr2RHet	1,649,658 – 1,649,740	- - - - - - - -	3981	1,649,658 – 1,649,740	-	4	90	80.52	-1.75	0.75	0.887545
2889	dm3.chr2RHet	1,662,520 – 1,662,670	- - - - - - - -	3982	1,662,520 – 1,662,670	+	4	151	57.69	-2.86	0.12	0.661951
2890	dm3.chr2RHet	1,663,235 – 1,663,294	- - - - - - - -	3983	1,663,235 – 1,663,294	-	5	65	57.91	-0.74	0.44	0.711203
2891	dm3.chr2RHet	1,675,965 – 1,676,061	- - - - - - - -	3984	1,675,965 – 1,676,061	+	4	118	49.01	-1.14	0.28	0.550417
2892	dm3.chr2RHet	1,693,198 – 1,693,252	- - - - - - - -	3985	1,693,198 – 1,693,252	-	3	60	52.00	-2.11	0.22	0.511353
2893	dm3.chr2RHet	1,694,566 – 1,694,626	- - - - - - - -	3986	1,694,566 – 1,694,626	-	3	64	56.77	-0.63	0.54	0.549593
2894	dm3.chr2RHet	1,699,638 – 1,699,746	- - - - - - - -	3987	1,699,638 – 1,699,746	-	4	110	57.06	-1.48	0.36	0.818517
2895	dm3.chr2RHet	1,703,836 – 1,703,951	- - - - - - - -	3988	1,703,836 – 1,703,951	-	3	120	50.14	-1.16	0.46	0.918136
2896	dm3.chr2RHet	1,717,727 – 1,717,803	- - - intron="intron;ID=intron_FBgn0020908:3_FBgn0020908:2;Name=Scp1-in;Parent=FBtr0113713;parent_type=mRNA" - - - -	3989	1,717,727 – 1,717,803	+	6	88	64.49	-2.66	0.25	0.934411
2897	dm3.chr2RHet	1,741,607 – 1,741,673	- - - intron="intron;ID=intron_FBgn0020908:5_FBgn0020908:4;Name=Scp1-in;Parent=FBtr0113713;parent_type=mRNA" - - - -	3990	1,741,607 – 1,741,673	+	4	66	84.09	-2.43	0.68	0.916162
2898	dm3.chr2RHet	1,745,902 – 1,745,992	- - - - - - - "mirBase_v16=dme-mir-2490\|3.5e-10"	3991	1,745,902 – 1,745,992	-	4	103	59.69	-3.49	0.49	0.999846
2899	dm3.chr2RHet	1,751,239 – 1,751,291	- - - - - - - -	3992	1,751,239 – 1,751,291	+	5	66	63.54	-1.64	0.55	0.972870
2900	dm3.chr2RHet	1,766,988 – 1,767,133	- - - - - - - -	3993	1,766,988 – 1,767,133	+	5	161	56.53	-1.70	0.25	0.699128
2901	dm3.chr2RHet	1,813,345 – 1,813,406	- - - - - - - -	3994	1,813,345 – 1,813,406	-	6	68	68.00	-1.24	0.49	0.766153
2902	dm3.chr2RHet	1,883,444 – 1,883,525	- - - intron="intron;ID=intron_FBgn0260995:4_FBgn0260995:5;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	3995	1,883,444 – 1,883,525	-	4	96	55.26	-1.00	0.44	0.813304
2903	dm3.chr2RHet	1,891,992 – 1,892,052	- - - intron="intron;ID=intron_FBgn0260995:4_FBgn0260995:5;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	3996	1,891,992 – 1,892,052	-	3	62	54.89	-1.35	0.40	0.720878
2904	dm3.chr2RHet	1,901,009 – 1,901,063	- - - intron="intron;ID=intron_FBgn0260995:4_FBgn0260995:5;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	3997	1,901,009 – 1,901,063	+	3	59	57.56	-1.25	0.55	0.916663
2905	dm3.chr2RHet	1,921,238 – 1,921,390	- - - intron="intron;ID=intron_FBgn0260995:5_FBgn0260995:6;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	3998	1,921,238 – 1,921,358	+	4	120	63.37	-2.45	0.40	0.991057
2905	dm3.chr2RHet	1,921,238 – 1,921,390		3999	1,921,278 – 1,921,390	+	4	119	51.86	-2.44	0.30	0.993691
2906	dm3.chr2RHet	1,930,021 – 1,930,166	- - - intron="intron;ID=intron_FBgn0260995:5_FBgn0260995:6;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	4000	1,930,021 – 1,930,166	+	6	177	62.01	-1.65	0.51	0.984849
2907	dm3.chr2RHet	1,935,671 – 1,935,735	- - - intron="intron;ID=intron_FBgn0260995:5_FBgn0260995:6;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	4001	1,935,671 – 1,935,735	-	4	65	56.04	-1.06	0.58	0.990094
2908	dm3.chr2RHet	1,940,365 – 1,940,419	- - - intron="intron;ID=intron_FBgn0260995:5_FBgn0260995:6;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	4002	1,940,365 – 1,940,419	+	4	57	68.17	-0.79	0.85	0.904042
2908	dm3.chr2RHet	1,940,365 – 1,940,419		4003	1,940,365 – 1,940,419	-	4	57	68.17	-1.20	0.72	0.943837
2909	dm3.chr2RHet	1,964,584 – 1,964,683	- - - intron="intron;ID=intron_FBgn0260995:5_FBgn0260995:6;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	4004	1,964,584 – 1,964,683	-	5	102	50.66	-1.50	0.26	0.776000
2910	dm3.chr2RHet	1,968,399 – 1,968,497	- - - intron="intron;ID=intron_FBgn0260995:6_FBgn0260995:7;Name=CG42596-in;Parent=FBtr0301776,FBtr0301777;parent_type=mRNA" - - - -	4005	1,968,399 – 1,968,497	-	4	113	55.92	-1.20	0.40	0.757693
2911	dm3.chr2RHet	1,986,601 – 1,986,679	- - - - - - - -	4006	1,986,601 – 1,986,679	-	4	78	62.82	-0.79	0.60	0.864136
2912	dm3.chr2RHet	2,071,877 – 2,071,971	- - - - - - - -	4007	2,071,877 – 2,071,971	+	3	98	51.03	-1.58	0.56	0.995266
2913	dm3.chr2RHet	2,079,964 – 2,080,020	- - - - - - - -	4008	2,079,964 – 2,080,020	+	3	62	74.73	-3.36	0.92	0.998735
2913	dm3.chr2RHet	2,079,964 – 2,080,020	- - - - - - - -	4009	2,079,964 – 2,080,020	-	3	62	74.73	-2.07	0.92	0.989607
2914	dm3.chr2RHet	2,145,057 – 2,145,135	- - - - - - - -	4010	2,145,057 – 2,145,135	+	4	84	49.06	-0.99	0.50	0.978520
2915	dm3.chr2RHet	2,165,457 – 2,165,563	- - - - - - - -	4011	2,165,457 – 2,165,563	+	3	106	59.75	-2.72	0.43	0.994984
2915	dm3.chr2RHet	2,165,457 – 2,165,563	- - - - - - - -	4012	2,165,457 – 2,165,563	-	3	106	59.75	-2.52	0.51	0.997131
2916	dm3.chr2RHet	2,167,200 – 2,167,314	- - - - - - - -	4013	2,167,200 – 2,167,314	+	3	120	57.60	-1.74	0.38	0.731409
2917	dm3.chr2RHet	2,169,205 – 2,169,309	- - - - - - - -	4014	2,169,205 – 2,169,309	+	7	104	63.16	-0.50	0.44	0.527941
2918	dm3.chr2RHet	2,172,902 – 2,172,992	- - - - - - - -	4015	2,172,902 – 2,172,992	-	3	102	53.54	-2.10	0.33	0.906363
2919	dm3.chr2RHet	2,203,641 – 2,203,719	- - - - - - - -	4016	2,203,641 – 2,203,719	-	9	82	72.02	-2.18	0.58	0.997932
2920	dm3.chr2RHet	2,211,765 – 2,211,829	- - - - - - - -	4017	2,211,765 – 2,211,829	-	6	68	58.08	-0.94	0.53	0.975113
2921	dm3.chr2RHet	2,246,925 – 2,246,980	- - - - - - - -	4018	2,246,925 – 2,246,980	-	5	55	88.91	-2.35	0.76	0.913966
2922	dm3.chr2RHet	2,267,402 – 2,267,464	- - - - - - - -	4019	2,267,402 – 2,267,464	+	3	63	58.06	-2.18	0.41	0.965583
2923	dm3.chr2RHet	2,269,052 – 2,269,105	- - - - - - - -	4020	2,269,052 – 2,269,105	+	3	55	56.25	-1.93	0.30	0.567412
2924	dm3.chr2RHet	2,333,171 – 2,333,234	- - - - - - - -	4021	2,333,171 – 2,333,234	-	5	74	50.59	-1.48	0.39	0.980679
2925	dm3.chr2RHet	2,342,193 – 2,342,249	- - - - - - - -	4022	2,342,193 – 2,342,249	-	5	59	58.32	-1.52	0.58	0.997469
2926	dm3.chr2RHet	2,350,520 – 2,350,577	- - - - - - - -	4023	2,350,520 – 2,350,577	+	3	59	58.86	-1.85	0.35	0.768262
2927	dm3.chr2RHet	2,351,723 – 2,351,779	- - - - - - - -	4024	2,351,723 – 2,351,779	+	4	58	57.80	-1.21	0.37	0.656488
2928	dm3.chr2RHet	2,352,279 – 2,352,360	- - - - - - - -	4025	2,352,279 – 2,352,360	-	4	96	65.78	-1.65	0.51	0.901857
2929	dm3.chr2RHet	2,354,056 – 2,354,140	- - - - - - - -	4026	2,354,056 – 2,354,140	-	3	94	60.66	-1.24	0.59	0.876467
2930	dm3.chr2RHet	2,364,480 – 2,364,546	- - - - - - - -	4027	2,364,480 – 2,364,546	+	5	66	55.32	-0.56	0.41	0.619634
2931	dm3.chr2RHet	2,368,168 – 2,368,228	- - - - - - - -	4028	2,368,168 – 2,368,228	-	7	69	50.56	-0.17	0.45	0.672118
2932	dm3.chr2RHet	2,417,076 – 2,417,140	- - - - - - - -	4029	2,417,076 – 2,417,140	+	4	64	57.52	-1.68	0.43	0.972078
2933	dm3.chr2RHet	2,583,195 – 2,583,251	- - - - - - - -	4030	2,583,195 – 2,583,251	+	7	58	64.07	-1.03	0.65	0.989856
2933	dm3.chr2RHet	2,583,195 – 2,583,251	- - - - - - - -	4031	2,583,195 – 2,583,251	-	7	58	64.07	-0.87	0.66	0.983916
2934	dm3.chr2RHet	2,591,911 – 2,591,963	- - - - - - - -	4032	2,591,911 – 2,591,963	-	3	52	60.90	-2.21	0.52	0.992462
2935	dm3.chr2RHet	2,597,639 – 2,597,705	- - - - - - - -	4033	2,597,639 – 2,597,705	+	3	66	63.64	-1.41	0.46	0.590605
2936	dm3.chr2RHet	2,645,123 – 2,645,180	- - - - - - - -	4034	2,645,123 – 2,645,180	-	4	58	65.80	-1.44	0.78	0.989848
2937	dm3.chr2RHet	2,649,483 – 2,649,548	- - - - - - - -	4035	2,649,483 – 2,649,548	+	4	66	59.49	-1.61	0.43	0.957800
2938	dm3.chr2RHet	2,782,876 – 2,782,937	- - - - - - - -	4036	2,782,876 – 2,782,937	-	3	61	92.22	-0.71	1.03	0.740651
2939	dm3.chr2RHet	2,808,828 – 2,808,938	- - - intron="intron;ID=intron_FBgn0039959:7_FBgn0039959:8;Name=CG17514-in;Parent=FBtr0113748;parent_type=mRNA" - - - -	4037	2,808,828 – 2,808,938	+	4	110	73.16	-2.02	0.54	0.906407
2940	dm3.chr2RHet	2,810,582 – 2,810,689	- - - intron="intron;ID=intron_FBgn0039959:7_FBgn0039959:8;Name=CG17514-in;Parent=FBtr0113748;parent_type=mRNA" - - - -	4038	2,810,582 – 2,810,689	+	4	114	52.64	-1.92	0.32	0.965655
2940	dm3.chr2RHet	2,810,582 – 2,810,689		4039	2,810,582 – 2,810,689	-	4	114	52.64	-1.15	0.39	0.879656
2941	dm3.chr2RHet	2,841,375 – 2,841,474	- - - - - - - -	4040	2,841,375 – 2,841,474	-	3	110	53.61	-1.66	0.41	0.907974
2942	dm3.chr2RHet	2,848,148 – 2,848,294	- - - - - - - -	4041	2,848,148 – 2,848,294	+	4	146	62.21	-1.76	0.33	0.714282
2943	dm3.chr2RHet	2,874,810 – 2,874,880	- - - - - - - -	4042	2,874,810 – 2,874,880	+	5	74	60.70	-1.25	0.35	0.536651
2943	dm3.chr2RHet	2,874,810 – 2,874,880	- - - - - - - -	4043	2,874,810 – 2,874,880	-	5	74	60.70	-1.13	0.37	0.535005
2944	dm3.chr2RHet	2,930,264 – 2,930,388	- - - - - - - -	4044	2,930,264 – 2,930,388	+	3	128	50.53	-0.97	0.46	0.835601
2945	dm3.chr2RHet	2,931,434 – 2,931,536	- - - - - - - -	4045	2,931,434 – 2,931,536	-	3	128	64.58	-1.10	0.57	0.575860
2946	dm3.chr2RHet	3,041,794 – 3,041,848	- - - - - - - -	4046	3,041,794 – 3,041,848	+	4	55	60.06	-1.89	0.43	0.986631
2946	dm3.chr2RHet	3,041,794 – 3,041,848	- - - - - - - -	4047	3,041,794 – 3,041,848	-	4	55	60.06	-2.82	0.65	0.999876
2947	dm3.chr2RHet	3,044,340 – 3,044,510	- - - - - - - -	4048	3,044,340 – 3,044,510	+	3	170	50.59	-2.46	0.20	0.838985
2948	dm3.chr2RHet	3,142,473 – 3,142,527	- - - intron="intron;ID=intron_FBgn0260994:2_FBgn0260994:1;Name=uex-in;Parent=FBtr0302226,FBtr0302227;parent_type=mRNA" - - - -	4049	3,142,473 – 3,142,527	-	4	54	66.05	-1.79	0.66	0.994269
2949	dm3.chr2RHet	3,145,343 – 3,145,406	- - - intron="intron;ID=intron_FBgn0260994:2_FBgn0260994:1;Name=uex-in;Parent=FBtr0302226,FBtr0302227;parent_type=mRNA" - - - -	4050	3,145,343 – 3,145,406	+	10	69	61.81	-1.38	0.49	0.993184
2949	dm3.chr2RHet	3,145,343 – 3,145,406		4051	3,145,343 – 3,145,406	-	10	69	61.81	-0.47	0.49	0.822524
2950	dm3.chr2RHet	3,184,323 – 3,184,444	- - - - - - - -	4052	3,184,323 – 3,184,444	-	4	121	55.59	-1.20	0.50	0.974284
2951	dm3.chr2RHet	3,189,913 – 3,190,007	- - - - - - - -	4053	3,189,913 – 3,190,007	-	4	94	54.94	-1.20	0.51	0.984799
2952	dm3.chr2RHet	3,213,788 – 3,213,846	- - - intron="intron;ID=intron_FBgn0046706:2_FBgn0046706:3;Name=Haspin-in;Parent=FBtr0113784;parent_type=mRNA" - - - -	4054	3,213,788 – 3,213,846	+	4	61	62.33	-1.09	0.45	0.581315
2953	dm3.chr2RHet	3,268,311 – 3,268,447	- - - - - - - -	4055	3,268,311 – 3,268,447	-	3	136	65.93	-1.58	0.58	0.890871
2954	dm3.chr2R	67,901 – 67,996	- - - - - - - -	4056	67,901 – 67,996	+	3	100	65.08	-1.65	0.60	0.929364
2955	dm3.chr2R	75,703 – 75,762	- - - - - - - -	4057	75,703 – 75,762	-	4	60	78.06	-3.03	0.77	0.997790
2956	dm3.chr2R	76,418 – 76,501	- - - - - - - -	4058	76,418 – 76,501	-	4	83	73.69	-1.42	0.56	0.506250
2957	dm3.chr2R	117,862 – 117,963	- - - - - - - -	4059	117,862 – 117,963	+	4	101	56.60	-1.55	0.37	0.929771
2958	dm3.chr2R	230,660 – 230,840	- - - intron="intron;ID=intron_FBgn0260798:4_FBgn0260798:3;Name=Gprk1-in;Parent=FBtr0302242,FBtr0111121;parent_type=mRNA" - - - -	4060	230,660 – 230,772	+	5	120	66.72	-1.88	0.39	0.899603
2958	dm3.chr2R	230,660 – 230,840		4061	230,737 – 230,840	+	4	120	65.34	-2.30	0.30	0.742791
2959	dm3.chr2R	293,846 – 293,954	- - - intron="intron;ID=intron_FBgn0260798:9_FBgn0260798:8;Name=Gprk1-in;Parent=FBtr0302242,FBtr0111121;parent_type=mRNA" - - - -	4062	293,846 – 293,954	-	3	120	76.11	-1.89	0.64	0.765024
2960	dm3.chr2R	300,437 – 300,514	- - - intron="intron;ID=intron_FBgn0260798:10_FBgn0260798:9;Name=Gprk1-in;Parent=FBtr0302242,FBtr0111121;parent_type=mRNA" - - - -	4063	300,437 – 300,514	+	9	86	57.09	-0.71	0.39	0.770099
2961	dm3.chr2R	322,069 – 322,160	- - - intron="intron;ID=intron_FBgn0260798:11_FBgn0260798:10;Name=Gprk1-in;Parent=FBtr0302242,FBtr0111121;parent_type=mRNA" - - - -	4064	322,069 – 322,160	+	5	101	68.88	-1.36	0.48	0.642840
2962	dm3.chr2R	359,802 – 359,940	- - - - - - - -	4065	359,802 – 359,900	+	5	115	84.16	-1.71	0.73	0.686611
2962	dm3.chr2R	359,802 – 359,940	- - - - - - - -	4066	359,842 – 359,940	+	6	120	77.80	-2.17	0.49	0.835158
2963	dm3.chr2R	365,603 – 365,772	- - - - - - - -	4067	365,603 – 365,719	-	6	118	75.43	-2.13	0.66	0.990410
				4068	365,640 – 365,759	-	6	120	76.42	-1.47	0.60	0.803771
				4069	365,652 – 365,772	-	6	120	79.22	-1.31	0.68	0.717390
2964	dm3.chr2R	369,994 – 370,168	- - - - - - - -	4070	369,994 – 370,168	-	5	175	86.23	-1.93	0.69	0.627560
2965	dm3.chr2R	378,561 – 378,648	- - - - - - - -	4071	378,561 – 378,648	+	5	89	64.52	-1.81	0.38	0.920328
2965	dm3.chr2R	378,561 – 378,648	- - - - - - - -	4072	378,561 – 378,648	-	5	89	64.52	-1.26	0.37	0.511430
2966	dm3.chr2R	383,256 – 383,351	- - - - - - - -	4073	383,256 – 383,351	+	3	96	72.82	-2.40	0.48	0.842123
2967	dm3.chr2R	384,106 – 384,319	- - - - - - - -	4074	384,106 – 384,217	-	5	120	73.15	-0.97	0.63	0.568430
				4075	384,139 – 384,257	-	6	120	76.84	-2.07	0.70	0.989255
				4076	384,177 – 384,297	-	5	120	78.17	-1.44	0.69	0.790174
				4077	384,217 – 384,319	-	5	120	66.84	-1.73	0.52	0.962229
2968	dm3.chr2R	387,940 – 388,048	- - - - - - - -	4078	387,940 – 388,048	+	3	109	65.03	-2.14	0.40	0.803622
2969	dm3.chr2R	389,458 – 389,561	- - - - - - - -	4079	389,458 – 389,561	+	6	106	73.01	-1.46	0.70	0.967818
2970	dm3.chr2R	441,820 – 441,913	- - - intron="intron;ID=intron_CG40293:434225-434559_CG40293:447866-448294;Name=Stlk-in;Parent=FBtr0111111;parent_type=mRNA" - - - -	4080	441,820 – 441,913	-	3	95	59.01	-1.85	0.42	0.877258
2971	dm3.chr2R	454,487 – 454,597	- - - - - - - -	4081	454,487 – 454,597	-	3	110	64.72	-1.95	0.55	0.953312
2972	dm3.chr2R	508,800 – 508,898	- - - - - - - -	4082	508,800 – 508,898	+	3	100	50.00	-1.73	0.27	0.591263
2973	dm3.chr2R	594,327 – 594,420	- - - intron="intron;ID=intron_FBgn0026401:13_FBgn0026401:12;Name=Nipped-B-in;Parent=FBtr0111119,FBtr0111118,FBtr0301454,FBtr0301455,FBtr0301456;parent_type=mRNA" - - - -	4083	594,327 – 594,420	+	3	98	50.87	-1.40	0.47	0.966211
2974	dm3.chr2R	622,109 – 622,159	- - - - - - - -	4084	622,109 – 622,159	+	5	51	52.98	-0.60	0.51	0.960123
2975	dm3.chr2R	626,035 – 626,088	- - - - - - - -	4085	626,035 – 626,088	-	3	67	73.40	-1.53	0.69	0.700756
2976	dm3.chr2R	642,545 – 642,641	- - - intron="intron;ID=intron_FBgn0039994:9_FBgn0039994:10;Name=CG17082-in;Parent=FBtr0111290,FBtr0111288,FBtr0111285,FBtr0111287,FBtr0111289,FBtr0302385;parent_type=mRNA" - - - -	4086	642,545 – 642,641	-	3	96	61.40	-1.61	0.43	0.657906
2977	dm3.chr2R	642,814 – 642,867	- - - intron="intron;ID=intron_FBgn0039994:9_FBgn0039994:10;Name=CG17082-in;Parent=FBtr0111290,FBtr0111288,FBtr0111285,FBtr0111287,FBtr0111289,FBtr0302385;parent_type=mRNA" - - - -	4087	642,814 – 642,867	+	4	54	53.89	-1.90	0.25	0.749269
2977	dm3.chr2R	642,814 – 642,867		4088	642,814 – 642,867	-	4	54	53.89	-1.27	0.42	0.937346
2978	dm3.chr2R	656,603 – 656,655	- - - - - - - -	4089	656,603 – 656,655	-	5	57	56.31	-1.65	0.27	0.736690
2979	dm3.chr2R	663,669 – 663,752	- - - - - - - -	4090	663,669 – 663,752	+	4	86	64.59	-1.84	0.42	0.834764
2980	dm3.chr2R	679,921 – 680,029	- - - - - - - -	4091	679,921 – 680,029	-	4	118	51.14	-2.58	0.22	0.972217
2981	dm3.chr2R	693,376 – 693,480	- - - - - - - -	4092	693,376 – 693,480	-	3	117	56.98	-1.19	0.42	0.557012
2982	dm3.chr2R	712,537 – 712,648	- - - - - - - -	4093	712,537 – 712,648	-	3	111	71.38	-1.09	0.78	0.731293
2983	dm3.chr2R	721,672 – 721,823	- - - - - - - -	4094	721,672 – 721,783	+	3	120	54.44	-2.03	0.24	0.519550
2983	dm3.chr2R	721,672 – 721,823	- - - - - - - -	4095	721,708 – 721,823	-	3	120	59.17	-1.81	0.42	0.918960
2984	dm3.chr2R	735,716 – 735,786	- - - - - - - -	4096	735,716 – 735,786	+	5	78	53.05	-1.53	0.31	0.868274
2984	dm3.chr2R	735,716 – 735,786	- - - - - - - -	4097	735,716 – 735,786	-	5	78	53.05	-0.87	0.45	0.920564
2985	dm3.chr2R	752,269 – 752,388	- - - - - - - -	4098	752,269 – 752,388	-	3	119	59.66	-1.29	0.52	0.872437
2986	dm3.chr2R	752,440 – 752,553	- - - - - - - -	4099	752,440 – 752,553	-	3	120	59.89	-2.48	0.39	0.976344
2987	dm3.chr2R	755,239 – 755,305	- - - - - - - -	4100	755,239 – 755,305	-	3	66	50.51	-1.08	0.39	0.710978
2988	dm3.chr2R	786,438 – 786,490	- - - - - - - -	4101	786,438 – 786,490	-	3	52	62.18	-2.77	0.56	0.998639
2989	dm3.chr2R	812,744 – 812,848	- - - - - - - -	4102	812,744 – 812,848	-	4	109	54.15	-1.54	0.29	0.746037
2990	dm3.chr2R	910,387 – 910,557	- - - - - - - -	4103	910,387 – 910,557	-	4	172	87.23	-2.48	0.66	0.823068
2991	dm3.chr2R	925,190 – 925,308	- - - - - - - -	4104	925,190 – 925,308	+	5	120	81.92	-1.44	0.72	0.609557
2992	dm3.chr2R	925,344 – 925,516	- - - - - - - -	4105	925,344 – 925,454	-	4	117	65.95	-1.35	0.47	0.749173
2992	dm3.chr2R	925,344 – 925,516	- - - - - - - -	4106	925,418 – 925,516	+	4	120	71.39	-1.39	0.52	0.588222
2993	dm3.chr2R	931,256 – 931,337	- - - - - - - -	4107	931,256 – 931,337	-	3	81	61.73	-1.05	0.61	0.880580
2994	dm3.chr2R	973,678 – 973,806	- - - - - - - -	4108	973,678 – 973,806	-	5	132	62.95	-1.65	0.34	0.684670
2995	dm3.chr2R	979,335 – 979,432	- - - - - - - -	4109	979,335 – 979,432	-	3	110	69.70	-1.93	0.44	0.500000
2996	dm3.chr2R	983,269 – 983,341	- - - - - - - -	4110	983,269 – 983,341	+	4	80	58.13	-1.40	0.36	0.726093
2997	dm3.chr2R	989,688 – 989,766	- - - - - - - -	4111	989,688 – 989,766	+	3	83	58.23	-1.59	0.53	0.965102
2997	dm3.chr2R	989,688 – 989,766	- - - - - - - -	4112	989,688 – 989,766	-	3	83	58.23	-1.34	0.71	0.986088
2998	dm3.chr2R	990,139 – 990,244	- - - - - - - -	4113	990,139 – 990,244	+	6	111	73.21	-1.22	0.60	0.734661
2998	dm3.chr2R	990,139 – 990,244	- - - - - - - -	4114	990,139 – 990,244	-	6	111	73.21	-2.37	0.73	0.997142
2999	dm3.chr2R	990,381 – 990,439	- - - - - - - -	4115	990,381 – 990,439	-	5	61	60.64	-1.14	0.43	0.861329
3000	dm3.chr2R	997,195 – 997,254	- - - - - - - -	4116	997,195 – 997,254	+	3	74	57.47	-1.71	0.38	0.728905
3000	dm3.chr2R	997,195 – 997,254	- - - - - - - -	4117	997,195 – 997,254	-	3	74	57.47	-2.13	0.31	0.736906
3001	dm3.chr2R	1,091,313 – 1,091,403	- - CDS="CDS;ID=CDS_FBgn0053554:13_652;Name=Nipped-A-cds;Parent=FBtr0303293;parent_type=mRNA" - - - - -	4118	1,091,313 – 1,091,403	+	13	91	76.81	-1.12	0.55	0.670001
3002	dm3.chr2R	1,092,307 – 1,092,369	- - - intron="intron;ID=intron_FBgn0053554:16_FBgn0053554:15;Name=Nipped-A-in;Parent=FBtr0091528,FBtr0303293;parent_type=mRNA" - - - -	4119	1,092,307 – 1,092,369	+	5	65	51.01	-0.28	0.41	0.500000
3003	dm3.chr2R	1,132,134 – 1,132,199	- - - intron="intron;ID=intron_FBgn0053554:24_FBgn0053554:23;Name=Nipped-A-in;Parent=FBtr0091528;parent_type=mRNA" - - - -	4120	1,132,134 – 1,132,199	+	4	67	66.50	-1.46	0.55	0.917533
3004	dm3.chr2R	1,143,460 – 1,143,525	- - - - - - - -	4121	1,143,460 – 1,143,525	-	5	66	69.53	-1.12	0.51	0.557599
3005	dm3.chr2R	1,182,672 – 1,182,762	- - CDS="CDS;ID=CDS_CG2682:1182621-1183475_494;Name=d4-cds;Parent=FBtr0086083;parent_type=mRNA" - - - - -	4122	1,182,672 – 1,182,762	+	10	93	77.35	-1.41	0.59	0.791080
3005	dm3.chr2R	1,182,672 – 1,182,762		4123	1,182,672 – 1,182,762	-	10	93	77.35	-1.44	0.58	0.786879
3006	dm3.chr2R	1,232,416 – 1,232,481	- - - - - - - -	4124	1,232,416 – 1,232,481	-	4	69	50.75	-0.60	0.63	0.982938
3007	dm3.chr2R	1,249,531 – 1,249,649	- - CDS="CDS;ID=CDS_CG10417:1250072-1249104_495;Name=CG10417-cds;Parent=FBtr0086092;parent_type=mRNA" - - - - -	4125	1,249,531 – 1,249,649	+	12	133	70.09	-2.07	0.31	0.822962
3007	dm3.chr2R	1,249,531 – 1,249,649		4126	1,249,531 – 1,249,649	-	12	133	70.09	-1.81	0.36	0.845955
3008	dm3.chr2R	1,254,369 – 1,254,516	FBnoncoding="ncRNA;ID=FBtr0302350;Name=CR42646-RA;Parent=FBgn0261429;Dbxref=FlyBase_Annotation_IDs:CR42646-RA;score_text=Strongly" - - - - - - -	4127	1,254,369 – 1,254,516	-	4	148	64.93	-2.29	0.38	0.916412
3009	dm3.chr2R	1,263,445 – 1,263,508	- - - - - - - -	4128	1,263,445 – 1,263,508	-	4	65	55.47	-0.85	0.45	0.814051
3010	dm3.chr2R	1,305,818 – 1,305,889	- - - intron="intron;ID=intron_FBgn0259247:2_FBgn0259247:3;Name=CG42345-in;Parent=FBtr0301063;parent_type=mRNA" - - - -	4129	1,305,818 – 1,305,889	+	5	72	58.30	0.01	0.57	0.628883
3011	dm3.chr2R	1,318,229 – 1,318,328	- - - intron="intron;ID=intron_FBgn0259247:3_FBgn0259247:4;Name=CG42345-in;Parent=FBtr0299918,FBtr0299920,FBtr0299921,FBtr0301063;parent_type=mRNA" - - - -	4130	1,318,229 – 1,318,323	+	4	94	59.03	-2.02	0.39	0.971472
				4131	1,318,229 – 1,318,323	-	4	94	59.03	-2.64	0.65	0.999764
				4132	1,318,234 – 1,318,328	+	4	94	57.47	-2.07	0.35	0.949362
				4133	1,318,234 – 1,318,328	-	4	94	57.47	-2.29	0.63	0.999488
3012	dm3.chr2R	1,343,197 – 1,343,307	- - - - - - - -	4134	1,343,197 – 1,343,307	-	3	110	57.19	-1.37	0.51	0.913272
3013	dm3.chr2R	1,359,579 – 1,359,634	- - - intron="intron;ID=intron_CG30440:7_CG30440:8;Name=CG30440-in;Parent=FBtr0086076;parent_type=mRNA" - - - -	4135	1,359,579 – 1,359,634	-	3	55	91.52	-0.72	1.00	0.609078
3014	dm3.chr2R	1,429,817 – 1,429,886	- - - intron="intron;ID=intron_CG30438:3_CG30438:4;Name=CG30438-in;Parent=FBtr0086067,FBtr0086068,FBtr0086069,FBtr0086070;parent_type=mRNA" - - - -	4136	1,429,817 – 1,429,886	-	3	69	83.00	-1.22	0.84	0.500000
3015	dm3.chr2R	1,455,721 – 1,455,812	- - - - - - - -	4137	1,455,721 – 1,455,812	-	3	116	48.28	-0.92	0.44	0.851725
3016	dm3.chr2R	1,467,118 – 1,467,193	- - - - - - - -	4138	1,467,118 – 1,467,193	+	4	77	49.11	-1.46	0.28	0.783092
3017	dm3.chr2R	1,472,846 – 1,472,898	- - - - - - - -	4139	1,472,846 – 1,472,898	+	3	52	57.05	-1.63	0.44	0.907339
3018	dm3.chr2R	1,483,315 – 1,483,607	- - - - - - - -	4140	1,483,315 – 1,483,382	-	3	67	62.63	-2.20	0.70	0.995450
				4141	1,483,382 – 1,483,501	-	3	120	54.08	-2.05	0.46	0.978001
				4142	1,483,497 – 1,483,607	-	3	110	52.60	-1.18	0.45	0.859358
3019	dm3.chr2R	1,545,012 – 1,545,111	- - CDS="CDS;ID=CDS_CG8426:9_509;Name=l(2)NC136-cds;Parent=FBtr0086062;parent_type=mRNA" - - - - -	4143	1,545,012 – 1,545,111	-	14	119	66.89	-1.31	0.65	0.996339
3020	dm3.chr2R	1,551,851 – 1,551,941	- - - - - - - -	4144	1,551,851 – 1,551,941	-	4	104	55.12	-1.84	0.32	0.813246
3021	dm3.chr2R	1,568,478 – 1,568,568	- - - intron="intron;ID=intron_CG11066:3_CG11066:4;Name=scaf-in;Parent=FBtr0086060,FBtr0086061;parent_type=mRNA" - - - -	4145	1,568,478 – 1,568,568	+	3	90	74.30	-2.21	0.64	0.909322
3021	dm3.chr2R	1,568,478 – 1,568,568		4146	1,568,478 – 1,568,568	-	3	90	74.30	-1.91	0.78	0.943654
3022	dm3.chr2R	1,574,018 – 1,574,125	- - - intron="intron;ID=intron_CG11066:2_CG11066:3;Name=scaf-in;Parent=FBtr0086060,FBtr0086061;parent_type=mRNA" - - - -	4147	1,574,018 – 1,574,125	+	5	118	78.62	-1.95	0.61	0.829626
3023	dm3.chr2R	1,594,413 – 1,594,522	- - - - - - - -	4148	1,594,413 – 1,594,522	+	3	113	73.10	-1.61	0.70	0.776771
3024	dm3.chr2R	1,595,247 – 1,595,349	- - - - - - - -	4149	1,595,247 – 1,595,349	+	6	102	70.47	-1.53	0.53	0.933629
3025	dm3.chr2R	1,597,640 – 1,597,767	- - - - - - - -	4150	1,597,640 – 1,597,731	+	11	102	89.93	-1.97	0.72	0.573676
				4151	1,597,640 – 1,597,731	-	11	102	89.93	-1.97	0.88	0.939260
				4152	1,597,655 – 1,597,767	-	12	118	95.67	-2.76	0.85	0.971557
3026	dm3.chr2R	1,605,161 – 1,605,279	- - CDS="CDS;ID=CDS_FBgn0000099:10_566;Name=ap-cds;Parent=FBtr0300504;parent_type=mRNA" - - - - -	4153	1,605,161 – 1,605,279	+	13	118	87.51	-1.53	0.73	0.659244
3026	dm3.chr2R	1,605,161 – 1,605,279		4154	1,605,161 – 1,605,279	-	13	118	87.51	-1.77	0.81	0.923300
3027	dm3.chr2R	1,614,737 – 1,614,795	- - - - - - - -	4155	1,614,737 – 1,614,795	+	5	58	75.84	-1.68	0.56	0.619559
3027	dm3.chr2R	1,614,737 – 1,614,795	- - - - - - - -	4156	1,614,737 – 1,614,795	-	5	58	75.84	-1.43	0.76	0.886236
3028	dm3.chr2R	1,624,086 – 1,624,181	- - - - - - - -	4157	1,624,086 – 1,624,181	+	12	120	82.95	-1.41	0.81	0.839827
3029	dm3.chr2R	1,627,669 – 1,627,719	- - - - - - - -	4158	1,627,669 – 1,627,719	-	4	57	50.00	-2.24	0.17	0.751481
3030	dm3.chr2R	1,630,047 – 1,630,145	- - - - - - - -	4159	1,630,047 – 1,630,145	+	11	108	70.59	-1.19	0.54	0.932648
3031	dm3.chr2R	1,640,052 – 1,640,146	- - - - - - - -	4160	1,640,052 – 1,640,146	+	6	118	66.51	-1.09	0.51	0.686199
3032	dm3.chr2R	1,668,308 – 1,668,382	- - - intron="intron;ID=intron_CG11163:11_CG11163:12;Name=CG11163-in;Parent=FBtr0086054;parent_type=mRNA" - - - -	4161	1,668,308 – 1,668,382	-	3	74	93.69	-2.58	0.90	0.976583
3033	dm3.chr2R	1,689,074 – 1,689,193	- - - - - - - -	4162	1,689,074 – 1,689,193	+	5	120	92.23	-1.72	0.81	0.525312
3034	dm3.chr2R	1,703,941 – 1,704,035	- - - - - - - -	4163	1,703,941 – 1,704,035	-	4	96	69.47	-1.34	0.52	0.653033
3035	dm3.chr2R	1,708,558 – 1,708,677	- - - - - - - -	4164	1,708,558 – 1,708,677	-	4	121	77.27	-1.67	0.61	0.608526
3036	dm3.chr2R	1,715,883 – 1,715,942	- - - - - - - -	4165	1,715,883 – 1,715,942	-	5	60	69.02	-1.55	0.64	0.978623
3037	dm3.chr2R	1,717,869 – 1,717,972	- - - - - - - -	4166	1,717,869 – 1,717,972	+	6	112	78.08	-1.50	0.59	0.639277
3038	dm3.chr2R	1,718,869 – 1,718,963	- - - - - - - -	4167	1,718,869 – 1,718,963	+	5	108	71.04	-1.70	0.50	0.789913
3038	dm3.chr2R	1,718,869 – 1,718,963	- - - - - - - -	4168	1,718,869 – 1,718,963	+	5	108	71.04	-1.70	0.50	0.789913
3039	dm3.chr2R	1,720,726 – 1,720,821	- - - - - - - -	4169	1,720,726 – 1,720,821	+	7	120	79.85	-2.90	0.72	0.996154
3039	dm3.chr2R	1,720,726 – 1,720,821	- - - - - - - -	4170	1,720,726 – 1,720,821	-	7	120	79.85	-1.96	0.74	0.952347
3040	dm3.chr2R	1,727,779 – 1,727,836	- - - - - - - -	4171	1,727,779 – 1,727,836	-	6	59	64.09	-1.63	0.36	0.801914
3041	dm3.chr2R	1,727,958 – 1,728,110	- - - - - - - -	4172	1,727,958 – 1,728,070	+	3	120	88.83	-1.62	0.84	0.624954
				4173	1,727,990 – 1,728,110	+	3	120	86.78	-2.58	0.84	0.977075
				4174	1,727,990 – 1,728,110	-	3	120	86.78	-1.18	0.91	0.632878
3042	dm3.chr2R	1,737,498 – 1,737,575	- - - intron="intron;ID=intron_FBgn0085414:1_FBgn0085414:2;Name=dpr12-in;Parent=FBtr0300553;parent_type=mRNA" - - - -	4175	1,737,498 – 1,737,575	+	11	80	83.45	-2.03	0.70	0.946867
3042	dm3.chr2R	1,737,498 – 1,737,575		4176	1,737,498 – 1,737,575	-	11	80	83.45	-1.97	0.62	0.854381
3043	dm3.chr2R	1,738,897 – 1,738,988	- - - intron="intron;ID=intron_FBgn0085414:1_FBgn0085414:2;Name=dpr12-in;Parent=FBtr0300553;parent_type=mRNA" - - - -	4177	1,738,897 – 1,738,988	-	5	91	95.82	-1.61	1.00	0.945142
3044	dm3.chr2R	1,763,758 – 1,763,856	- - - - - - - -	4178	1,763,758 – 1,763,856	-	5	98	77.75	-1.36	0.69	0.731724
3045	dm3.chr2R	1,770,287 – 1,770,352	- - - - - - - -	4179	1,770,287 – 1,770,352	-	9	67	73.12	-1.81	0.37	0.655068
3046	dm3.chr2R	1,772,661 – 1,772,721	- - - - - - - -	4180	1,772,661 – 1,772,721	+	3	61	57.69	-1.35	0.60	0.969281
3047	dm3.chr2R	1,773,369 – 1,773,488	- - - - - - - -	4181	1,773,369 – 1,773,464	-	7	96	88.76	-1.24	0.85	0.564549
3047	dm3.chr2R	1,773,369 – 1,773,488	- - - - - - - -	4182	1,773,389 – 1,773,488	-	12	118	77.57	-1.84	0.47	0.645952
3048	dm3.chr2R	1,780,031 – 1,780,081	- - - - - - - -	4183	1,780,031 – 1,780,081	-	4	50	97.00	-1.50	1.00	0.917882
3049	dm3.chr2R	1,782,956 – 1,783,056	- - - - - - - -	4184	1,782,956 – 1,783,056	+	7	111	79.58	-1.78	0.53	0.543088
3050	dm3.chr2R	1,820,025 – 1,820,124	- - - - - - - -	4185	1,820,025 – 1,820,124	-	12	109	84.33	-1.48	0.72	0.703524
3051	dm3.chr2R	1,835,832 – 1,835,895	- - - - - - - -	4186	1,835,832 – 1,835,895	+	3	63	55.85	-0.48	0.56	0.525215
3052	dm3.chr2R	1,844,301 – 1,844,358	- - - - - - - -	4187	1,844,301 – 1,844,358	-	3	57	87.13	-1.69	0.79	0.548126
3053	dm3.chr2R	1,851,447 – 1,851,524	- - - intron="intron;ID=intron_CG7881:1_CG7881:2;Name=CG7881-in;Parent=FBtr0086033;parent_type=mRNA" - - - -	4188	1,851,447 – 1,851,524	-	4	78	72.29	-1.99	0.52	0.893440
3054	dm3.chr2R	1,867,285 – 1,867,435	- - - - - - - -	4189	1,867,285 – 1,867,396	-	8	120	69.59	-1.87	0.56	0.990529
3054	dm3.chr2R	1,867,285 – 1,867,435	- - - - - - - -	4190	1,867,321 – 1,867,435	-	8	118	72.88	-1.65	0.61	0.965379
3055	dm3.chr2R	1,874,021 – 1,874,074	- - - intron="intron;ID=intron_CG7873:2_CG7873:3;Name=Src42A-in;Parent=FBtr0085967;parent_type=mRNA" - - - -	4191	1,874,021 – 1,874,074	-	3	53	94.97	-1.03	1.02	0.834357
3056	dm3.chr2R	1,876,174 – 1,876,266	- - - intron="intron;ID=intron_CG7873:3_CG7873:4;Name=Src42A-in;Parent=FBtr0085967,FBtr0085968;parent_type=mRNA" - - - -	4192	1,876,174 – 1,876,266	+	7	105	55.93	-1.57	0.22	0.500000
3057	dm3.chr2R	1,884,862 – 1,884,975	- - - intron="intron;ID=intron_CG7873:3_CG7873:4;Name=Src42A-in;Parent=FBtr0085967,FBtr0085968;parent_type=mRNA" - - - -	4193	1,884,862 – 1,884,975	+	6	113	69.00	-2.54	0.26	0.783512
3058	dm3.chr2R	1,885,281 – 1,885,399	- - CDS="CDS;ID=CDS_FBgn0033049:1_517;Name=CG14471-cds;Parent=FBtr0085970;parent_type=mRNA" intron="intron;ID=intron_CG7873:3_CG7873:4;Name=Src42A-in;Parent=FBtr0085967,FBtr0085968;parent_type=mRNA" - - - -	4194	1,885,281 – 1,885,399	+	13	120	75.65	-0.96	0.60	0.801813
3059	dm3.chr2R	1,886,786 – 1,886,936	- - CDS="CDS;ID=CDS_FBgn0033049:1_517;Name=CG14471-cds;Parent=FBtr0085970;parent_type=mRNA" intron="intron;ID=intron_CG7873:3_CG7873:4;Name=Src42A-in;Parent=FBtr0085967,FBtr0085968;parent_type=mRNA" - - - -	4195	1,886,786 – 1,886,900	-	6	115	74.11	-0.91	0.63	0.642764
3059	dm3.chr2R	1,886,786 – 1,886,936		4196	1,886,824 – 1,886,936	-	7	117	72.04	-1.54	0.40	0.583888
3060	dm3.chr2R	1,923,956 – 1,924,029	- - - - - - - -	4197	1,923,956 – 1,924,029	+	5	75	79.04	-1.72	0.67	0.798305
3061	dm3.chr2R	1,937,737 – 1,937,804	- - - intron="intron;ID=intron_FBgn0085241:3_FBgn0085241:2;Name=CG34212-in;Parent=FBtr0302826;parent_type=mRNA" - - - -	4198	1,937,737 – 1,937,804	+	5	70	72.69	-1.43	0.52	0.632322
3062	dm3.chr2R	1,946,196 – 1,946,304	- - CDS="CDS;ID=CDS_CG7856:1_501;Name=CG7856-cds;Parent=FBtr0086024;parent_type=mRNA" intron="intron;ID=intron_FBgn0033058:1_FBgn0033058:2;Name=CCHa2r-in;Parent=FBtr0085975,FBtr0301687;parent_type=mRNA" - - - -	4199	1,946,196 – 1,946,304	-	6	120	80.95	-1.77	0.58	0.513968
3063	dm3.chr2R	1,946,344 – 1,946,450	- - CDS="CDS;ID=CDS_CG7856:1_501;Name=CG7856-cds;Parent=FBtr0086024;parent_type=mRNA" intron="intron;ID=intron_FBgn0033058:1_FBgn0033058:2;Name=CCHa2r-in;Parent=FBtr0085975,FBtr0301687;parent_type=mRNA" - - - -	4200	1,946,344 – 1,946,450	+	6	120	74.22	-0.82	0.71	0.594344
3064	dm3.chr2R	1,956,990 – 1,957,097	- - - - - - - -	4201	1,956,990 – 1,957,097	-	5	109	91.70	-2.10	0.86	0.913338
3065	dm3.chr2R	1,992,584 – 1,992,678	- - - intron="intron;ID=intron_FBgn0000546:7_FBgn0000546:6;Name=EcR-in;Parent=FBtr0086011,FBtr0302439;parent_type=mRNA" - - - -	4202	1,992,584 – 1,992,678	-	4	98	82.39	-1.75	0.82	0.888164
3066	dm3.chr2R	2,004,773 – 2,004,880	- - - intron="intron;ID=intron_FBgn0000546:7_FBgn0000546:6;Name=EcR-in;Parent=FBtr0086011,FBtr0302439;parent_type=mRNA" - - - -	4203	2,004,773 – 2,004,880	-	3	120	77.43	-1.92	0.80	0.943180
3067	dm3.chr2R	2,012,514 – 2,012,565	- - - intron="intron;ID=intron_FBgn0000546:9_FBgn0000546:7;Name=EcR-in;Parent=FBtr0086011;parent_type=mRNA" - - - -	4204	2,012,514 – 2,012,565	-	6	53	85.16	-3.73	0.87	0.998967
3068	dm3.chr2R	2,013,432 – 2,013,489	- - - intron="intron;ID=intron_FBgn0000546:9_FBgn0000546:7;Name=EcR-in;Parent=FBtr0086011;parent_type=mRNA" - - - -	4205	2,013,432 – 2,013,489	+	5	57	79.47	-2.34	0.54	0.897073
3068	dm3.chr2R	2,013,432 – 2,013,489		4206	2,013,432 – 2,013,489	-	5	57	79.47	-2.53	0.55	0.950076
3069	dm3.chr2R	2,023,361 – 2,023,431	- - - intron="intron;ID=intron_FBgn0000546:10_FBgn0000546:8;Name=EcR-in;Parent=FBtr0302439;parent_type=mRNA" - - - -	4207	2,023,361 – 2,023,431	-	4	70	61.67	-1.63	0.64	0.994477
3070	dm3.chr2R	2,029,664 – 2,029,728	FBnoncoding="tRNA;ID=FBtr0085979;Name=tRNA:R2:42Ad-RA;Parent=FBgn0011958;Dbxref=FlyBase_Annotation_IDs:CR30304-RA;score_text=Weakly" tRNAscann="Arg_chr2R_trna1" - - "Rfam_10.0=RF00005;tRNA;AAPU01010262.1/58672-58744\|1.5e-26" - - -	4208	2,029,664 – 2,029,728	-	13	74	94.50	-1.11	0.92	0.500000
3071	dm3.chr2R	2,037,600 – 2,037,733	- - - - - - - -	4209	2,037,600 – 2,037,695	-	9	105	75.72	-1.31	0.55	0.649583
3071	dm3.chr2R	2,037,600 – 2,037,733	- - - - - - - -	4210	2,037,625 – 2,037,733	-	11	116	67.51	-1.57	0.50	0.982555
3072	dm3.chr2R	2,040,089 – 2,040,202	FBnoncoding="tRNA;ID=FBtr0086016;Name=tRNA:N5:42Ah-RA;Parent=FBgn0011938;Dbxref=FlyBase_Annotation_IDs:CR30513-RA;score_text=Weakly" tRNAscann="Asn_chr2R_trna99" - intron="intron;ID=intron_FBgn0000546:14_FBgn0000546:12;Name=EcR-in;Parent=FBtr0086010;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB011110628.1/812-884\|1.2e-25" "Noncode_2.0=n125534_u124632_DQ592147_piRNA_human\|3.7e-07" "unique_Noncode_2.0=u124631_piRNA_human\|3.2e-07" -	4211	2,040,089 – 2,040,202	+	12	128	75.39	-1.99	0.82	0.996934
3072	dm3.chr2R	2,040,089 – 2,040,202		4212	2,040,089 – 2,040,202	-	12	128	75.39	-2.00	0.78	0.997099
3073	dm3.chr2R	2,040,972 – 2,041,084	FBnoncoding="tRNA;ID=FBtr0100016;Name=tRNA:N5:42Af-RA;Parent=FBgn0011936;Dbxref=FlyBase_Annotation_IDs:CR33973-RA;score_text=Weakly" tRNAscann="Asn_chr2R_trna98" - intron="intron;ID=intron_FBgn0000546:14_FBgn0000546:12;Name=EcR-in;Parent=FBtr0086010;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB011110628.1/812-884\|1.2e-25" "Noncode_2.0=n125534_u124632_DQ592147_piRNA_human\|3.7e-07" "unique_Noncode_2.0=u124631_piRNA_human\|3.2e-07" -	4213	2,040,972 – 2,041,084	+	10	117	79.10	-1.88	0.93	0.990397
3073	dm3.chr2R	2,040,972 – 2,041,084		4214	2,040,972 – 2,041,084	-	10	117	79.10	-1.91	0.96	0.991164
3074	dm3.chr2R	2,044,809 – 2,044,863	- - - - - - - -	4215	2,044,809 – 2,044,863	+	5	54	95.19	-2.01	0.87	0.831763
3074	dm3.chr2R	2,044,809 – 2,044,863	- - - - - - - -	4216	2,044,809 – 2,044,863	-	5	54	95.19	-1.33	0.99	0.874640
3075	dm3.chr2R	2,049,038 – 2,049,122	FBnoncoding="tRNA;ID=FBtr0085980;Name=tRNA:R2:42Ac-RA;Parent=FBgn0011957;Dbxref=FlyBase_Annotation_IDs:CR30512-RA;score_text=Weakly" tRNAscann="Arg_chr2R_trna3" - - "Rfam_10.0=RF00005;tRNA;AAPU01010262.1/58672-58744\|2.3e-32" "Noncode_2.0=n144358_u143456_DQ573323_piRNA_human\|6.6e-08" "unique_Noncode_2.0=u143456_piRNA_human\|5.7e-08" -	4217	2,049,038 – 2,049,122	-	11	92	71.58	-1.27	0.69	0.987345
3076	dm3.chr2R	2,049,503 – 2,049,586	FBnoncoding="tRNA;ID=FBtr0086015;Name=tRNA:N5:42Ac-RA;Parent=FBgn0011933;Dbxref=FlyBase_Annotation_IDs:CR30518-RA;score_text=Weakly" tRNAscann="Asn_chr2R_trna97" - - "Rfam_10.0=RF00005;tRNA;ABLA01037487.1/809-882\|1.2e-18" "Noncode_2.0=n125534_u124632_DQ592147_piRNA_human\|2.6e-07" "unique_Noncode_2.0=u124631_piRNA_human\|2.2e-07" -	4218	2,049,503 – 2,049,586	+	12	101	58.21	-1.37	0.55	0.998493
3076	dm3.chr2R	2,049,503 – 2,049,586		4219	2,049,503 – 2,049,586	-	12	101	58.21	-1.06	0.42	0.962581
3077	dm3.chr2R	2,059,000 – 2,059,077	FBnoncoding="tRNA;ID=FBtr0086007;Name=tRNA:K2:42Ad-RA;Parent=FBgn0011890;Dbxref=FlyBase_Annotation_IDs:CR30515-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna94" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|7.7e-29" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|6.6e-17" "unique_Noncode_2.0=u201439_mRNAlike\|5.7e-17" -	4220	2,059,000 – 2,059,077	+	11	80	96.17	-3.14	1.00	0.997740
3077	dm3.chr2R	2,059,000 – 2,059,077		4221	2,059,000 – 2,059,077	-	11	80	96.17	-2.48	1.00	0.993338
3078	dm3.chr2R	2,059,187 – 2,059,265	FBnoncoding="tRNA;ID=FBtr0085986;Name=tRNA:CR30316-RA;Parent=FBgn0050316;Alias=CR30316-RA;Dbxref=FlyBase_Annotation_IDs:CR30316-RA;score_text=Weakly" tRNAscann="Arg_chr2R_trna9" - - "Rfam_10.0=RF00005;tRNA;AAPU01010262.1/58672-58744\|2.1e-32" "Noncode_2.0=n144358_u143456_DQ573323_piRNA_human\|6.0e-08" "unique_Noncode_2.0=u143456_piRNA_human\|5.2e-08" -	4222	2,059,187 – 2,059,265	+	14	80	84.96	-1.35	0.76	0.803167
3078	dm3.chr2R	2,059,187 – 2,059,265		4223	2,059,187 – 2,059,265	-	14	80	84.96	-1.55	0.70	0.807896
3079	dm3.chr2R	2,064,450 – 2,064,511	- - - - - - - -	4224	2,064,450 – 2,064,511	+	3	61	88.52	-2.99	0.89	0.994265
3079	dm3.chr2R	2,064,450 – 2,064,511	- - - - - - - -	4225	2,064,450 – 2,064,511	-	3	61	88.52	-2.92	0.93	0.995549
3080	dm3.chr2R	2,066,068 – 2,066,119	- - - - "Rfam_10.0=RF00005;tRNA;AAIZ01010430.1/26882-26953\|5.6e-10" - - -	4226	2,066,068 – 2,066,119	+	7	55	78.82	-0.64	0.99	0.843918
3080	dm3.chr2R	2,066,068 – 2,066,119		4227	2,066,068 – 2,066,119	-	7	55	78.82	-1.06	0.86	0.893930
3081	dm3.chr2R	2,077,642 – 2,077,712	FBnoncoding="tRNA;ID=FBtr0086004;Name=tRNA:N5:42Ae-RA;Parent=FBgn0011935;Dbxref=FlyBase_Annotation_IDs:CR30519-RA;score_text=Weakly" tRNAscann="Asn_chr2R_trna92" - intron="intron;ID=intron_FBgn0033068:10_FBgn0033068:9;Name=Ptr-in;Parent=FBtr0086003;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB011110628.1/812-884\|1.6e-23" "Noncode_2.0=n125534_u124632_DQ592147_piRNA_human\|2.1e-07" "unique_Noncode_2.0=u124631_piRNA_human\|1.8e-07" -	4228	2,077,642 – 2,077,712	+	13	73	94.22	-1.32	0.93	0.717350
3081	dm3.chr2R	2,077,642 – 2,077,712		4229	2,077,642 – 2,077,712	-	13	73	94.22	-1.52	0.94	0.854773
3082	dm3.chr2R	2,077,883 – 2,077,986	FBnoncoding="tRNA;ID=FBtr0085989;Name=tRNA:N5:42Ad-RA;Parent=FBgn0011934;Dbxref=FlyBase_Annotation_IDs:CR30319-RA;score_text=Weakly" tRNAscann="Asn_chr2R_trna10" - intron="intron;ID=intron_FBgn0033068:10_FBgn0033068:9;Name=Ptr-in;Parent=FBtr0086003;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABLA01037487.1/809-882\|4.0e-22" "Noncode_2.0=n125534_u124632_DQ592147_piRNA_human\|3.3e-07" "unique_Noncode_2.0=u124631_piRNA_human\|2.9e-07" -	4230	2,077,883 – 2,077,986	+	12	113	75.21	-1.30	0.75	0.979506
3082	dm3.chr2R	2,077,883 – 2,077,986		4231	2,077,883 – 2,077,986	-	12	113	75.21	-1.32	0.64	0.958624
3083	dm3.chr2R	2,098,567 – 2,098,658	- - - intron="intron;ID=intron_FBgn0021847:6_FBgn0021847:5;Name=l(2)k14710-in;Parent=FBtr0086000;parent_type=mRNA" - - - -	4232	2,098,567 – 2,098,658	+	7	96	56.51	-1.74	0.26	0.882049
3083	dm3.chr2R	2,098,567 – 2,098,658		4233	2,098,567 – 2,098,658	-	7	96	56.51	-1.74	0.36	0.987883
3084	dm3.chr2R	2,099,589 – 2,099,684	- - - - - - - -	4234	2,099,589 – 2,099,684	-	12	101	66.97	-0.43	0.49	0.594417
3085	dm3.chr2R	2,101,704 – 2,101,782	- - - - - - - -	4235	2,101,704 – 2,101,782	+	3	91	85.35	-1.17	0.96	0.837015
3086	dm3.chr2R	2,108,342 – 2,108,434	- - - intron="intron;ID=intron_CG8276:1_CG8276:2;Name=bin3-in;Parent=FBtr0085992;parent_type=mRNA" - - - -	4236	2,108,342 – 2,108,434	+	3	92	75.36	-1.00	0.89	0.798179
3087	dm3.chr2R	2,109,030 – 2,109,135	- - - intron="intron;ID=intron_CG8276:8_CG8276:2;Name=bin3-in;Parent=FBtr0085993;parent_type=mRNA" - - - -	4237	2,109,030 – 2,109,135	-	11	117	56.49	-2.67	0.04	0.737973
3088	dm3.chr2R	2,115,330 – 2,115,497	- - - intron="intron;ID=intron_CG8276:8_CG8276:2;Name=bin3-in;Parent=FBtr0085993;parent_type=mRNA" - - - -	4238	2,115,330 – 2,115,497	+	3	167	77.82	-2.63	0.46	0.723306
3088	dm3.chr2R	2,115,330 – 2,115,497		4239	2,115,330 – 2,115,497	-	3	167	77.82	-2.41	0.54	0.797112
3089	dm3.chr2R	2,121,210 – 2,121,302	- - CDS="CDS;ID=CDS_CG8276:2_515;Name=bin3-cds;Parent=FBtr0085992,FBtr0085993;parent_type=mRNA" - - - - -	4240	2,121,210 – 2,121,302	+	7	105	75.92	-1.47	0.71	0.932866
3090	dm3.chr2R	2,146,271 – 2,146,415	- - - - - - - -	4241	2,146,271 – 2,146,415	+	5	153	64.17	-2.16	0.39	0.979150
3090	dm3.chr2R	2,146,271 – 2,146,415	- - - - - - - -	4242	2,146,271 – 2,146,415	-	5	153	64.17	-2.18	0.39	0.980575
3091	dm3.chr2R	2,199,419 – 2,199,530	- - - - - - - -	4243	2,199,419 – 2,199,528	-	4	119	55.90	-1.61	0.38	0.933233
3091	dm3.chr2R	2,199,419 – 2,199,530	- - - - - - - -	4244	2,199,421 – 2,199,530	-	4	119	51.63	-1.45	0.38	0.945747
3092	dm3.chr2R	2,230,911 – 2,230,980	- - - - - - - -	4245	2,230,911 – 2,230,980	-	4	69	78.50	-1.85	0.69	0.888077
3093	dm3.chr2R	2,240,917 – 2,241,033	- - - - - - - -	4246	2,240,917 – 2,241,033	-	3	118	63.64	-1.73	0.44	0.728147
3094	dm3.chr2R	2,243,721 – 2,243,800	- - - - - - - -	4247	2,243,721 – 2,243,800	-	3	79	75.57	-2.26	0.84	0.985938
3095	dm3.chr2R	2,403,283 – 2,403,405	- - - intron="intron;ID=intron_FBgn0086655:1_FBgn0086655:2;Name=jing-in;Parent=FBtr0114362;parent_type=mRNA" - - - -	4248	2,403,283 – 2,403,401	-	6	118	78.81	-1.63	0.56	0.677946
3095	dm3.chr2R	2,403,283 – 2,403,405		4249	2,403,287 – 2,403,405	-	6	118	78.25	-1.47	0.55	0.544738
3096	dm3.chr2R	2,409,432 – 2,409,583	- - - intron="intron;ID=intron_FBgn0086655:1_FBgn0086655:2;Name=jing-in;Parent=FBtr0114362;parent_type=mRNA" - - - -	4250	2,409,432 – 2,409,545	+	6	116	69.29	-1.20	0.47	0.734311
3096	dm3.chr2R	2,409,432 – 2,409,583		4251	2,409,468 – 2,409,583	+	5	115	72.21	-2.56	0.45	0.983897
3097	dm3.chr2R	2,415,147 – 2,415,268	- - - intron="intron;ID=intron_FBgn0086655:1_FBgn0086655:2;Name=jing-in;Parent=FBtr0114362;parent_type=mRNA" - - - -	4252	2,415,147 – 2,415,268	+	3	125	90.62	-2.61	0.76	0.904121
3097	dm3.chr2R	2,415,147 – 2,415,268		4253	2,415,147 – 2,415,268	-	3	125	90.62	-2.44	0.69	0.641664
3098	dm3.chr2R	2,421,008 – 2,421,098	- - - - - - - -	4254	2,421,008 – 2,421,098	+	4	90	86.48	-2.21	0.80	0.934818
3099	dm3.chr2R	2,427,981 – 2,428,074	- - - - - - - -	4255	2,427,981 – 2,428,074	+	12	119	81.89	-1.49	0.69	0.667834
3100	dm3.chr2R	2,430,081 – 2,430,178	- - - - - - - -	4256	2,430,081 – 2,430,178	+	7	105	65.86	-1.11	0.41	0.586581
3101	dm3.chr2R	2,449,352 – 2,449,456	- - - - - - - -	4257	2,449,352 – 2,449,456	+	8	105	64.95	-0.87	0.42	0.587533
3102	dm3.chr2R	2,472,630 – 2,472,760	- - - - - - - -	4258	2,472,630 – 2,472,723	-	7	96	66.92	-1.52	0.42	0.911220
				4259	2,472,667 – 2,472,760	+	6	96	78.55	-1.48	0.56	0.552128
				4260	2,472,667 – 2,472,760	-	6	96	78.55	-1.77	0.62	0.896587
3103	dm3.chr2R	2,478,951 – 2,479,042	- - - - - - - -	4261	2,478,951 – 2,479,042	-	9	103	62.81	-0.88	0.39	0.565476
3104	dm3.chr2R	2,491,964 – 2,492,018	- - - - - - - -	4262	2,491,964 – 2,492,018	-	4	54	93.52	-2.15	0.87	0.904761
3105	dm3.chr2R	2,503,071 – 2,503,125	- - CDS="CDS;ID=CDS_FBgn0086655:7_522;Name=jing-cds;Parent=FBtr0301636;parent_type=mRNA" - - - - -	4263	2,503,071 – 2,503,125	-	6	54	89.01	-1.64	0.89	0.890799
3106	dm3.chr2R	2,503,634 – 2,503,766	- - CDS="CDS;ID=CDS_FBgn0086655:8_522;Name=jing-cds;Parent=FBtr0301636;parent_type=mRNA" - - - - -	4264	2,503,634 – 2,503,739	+	6	105	81.33	-1.60	0.71	0.836344
				4265	2,503,634 – 2,503,739	-	6	105	81.33	-3.35	0.79	0.998887
				4266	2,503,664 – 2,503,766	-	6	104	81.17	-3.41	0.78	0.998946
3107	dm3.chr2R	2,513,239 – 2,513,335	- - - - - - - -	4267	2,513,239 – 2,513,335	-	12	112	68.06	-0.42	0.52	0.506480
3108	dm3.chr2R	2,520,011 – 2,520,146	- - - - - - - -	4268	2,520,011 – 2,520,108	-	8	109	72.24	-1.32	0.49	0.731005
3108	dm3.chr2R	2,520,011 – 2,520,146	- - - - - - - -	4269	2,520,046 – 2,520,146	+	9	115	67.81	-1.44	0.37	0.777098
3109	dm3.chr2R	2,542,668 – 2,542,733	- - CDS="CDS;ID=CDS_FBgn0050443:5_649;Name=Opbp-cds;Parent=FBtr0086109;parent_type=mRNA" - - - - -	4270	2,542,668 – 2,542,733	+	12	70	77.39	-1.87	0.41	0.549179
3110	dm3.chr2R	2,549,660 – 2,549,763	- - - - - - - -	4271	2,549,660 – 2,549,763	+	5	112	74.77	-2.04	0.52	0.864634
3111	dm3.chr2R	2,566,853 – 2,566,905	- - - intron="intron;ID=intron_FBgn0259977:3_FBgn0259977:2;Name=Tdc1-in;Parent=FBtr0086143;parent_type=mRNA" - - - -	4272	2,566,853 – 2,566,905	+	6	61	72.48	-1.24	0.62	0.804979
3111	dm3.chr2R	2,566,853 – 2,566,905		4273	2,566,853 – 2,566,905	-	6	61	72.48	-2.00	0.88	0.994442
3112	dm3.chr2R	2,593,919 – 2,593,998	- - - intron="intron;ID=intron_FBgn0033095:8_FBgn0033095:7;Name=CG3409-in;Parent=FBtr0302166;parent_type=mRNA" - - - -	4274	2,593,919 – 2,593,998	-	4	84	80.99	-1.48	0.77	0.684684
3113	dm3.chr2R	2,594,528 – 2,594,627	- - - intron="intron;ID=intron_FBgn0033095:8_FBgn0033095:7;Name=CG3409-in;Parent=FBtr0302166;parent_type=mRNA" - - - -	4275	2,594,528 – 2,594,627	+	4	107	65.54	-1.62	0.48	0.890856
3113	dm3.chr2R	2,594,528 – 2,594,627		4276	2,594,528 – 2,594,627	-	4	107	65.54	-1.99	0.42	0.915746
3114	dm3.chr2R	2,629,300 – 2,629,395	- - - - - - - -	4277	2,629,300 – 2,629,395	+	5	99	71.28	-1.39	0.51	0.570734
3115	dm3.chr2R	2,638,629 – 2,638,749	- - - intron="intron;ID=intron_FBgn0027066:2_FBgn0027066:4;Name=Eb1-in;Parent=FBtr0086129;parent_type=mRNA" - - - -	4278	2,638,629 – 2,638,749	+	3	120	70.03	-3.18	0.46	0.986148
3116	dm3.chr2R	2,656,271 – 2,656,380	- - - intron="intron;ID=intron_FBgn0085421:14_FBgn0085421:13;Name=Epac-in;Parent=FBtr0112635,FBtr0112636;parent_type=mRNA" - - - -	4279	2,656,271 – 2,656,380	+	7	118	87.00	-1.95	0.76	0.836010
3117	dm3.chr2R	2,660,565 – 2,660,617	- - - intron="intron;ID=intron_FBgn0085421:16_FBgn0085421:15;Name=Epac-in;Parent=FBtr0112635,FBtr0112636;parent_type=mRNA" - - - -	4280	2,660,565 – 2,660,617	-	6	52	74.87	-1.90	0.46	0.831586
3118	dm3.chr2R	2,664,924 – 2,665,009	- - - intron="intron;ID=intron_FBgn0085421:17_FBgn0085421:16;Name=Epac-in;Parent=FBtr0112636;parent_type=mRNA" - - - -	4281	2,664,924 – 2,665,009	-	7	91	68.77	-1.81	0.43	0.961466
3119	dm3.chr2R	2,669,873 – 2,669,968	- - - - - - - -	4282	2,669,873 – 2,669,964	+	3	102	86.93	-2.03	0.90	0.956509
3119	dm3.chr2R	2,669,873 – 2,669,968	- - - - - - - -	4283	2,669,877 – 2,669,968	+	3	102	84.64	-1.81	0.88	0.921196
3120	dm3.chr2R	2,677,074 – 2,677,159	- - - - - - - -	4284	2,677,074 – 2,677,159	+	3	108	76.85	-2.77	0.64	0.982922
3120	dm3.chr2R	2,677,074 – 2,677,159	- - - - - - - -	4285	2,677,074 – 2,677,159	-	3	108	76.85	-2.19	0.66	0.915501
3121	dm3.chr2R	2,682,579 – 2,682,711	- - - intron="intron;ID=intron_FBgn0085421:20_FBgn0085421:19;Name=Epac-in;Parent=FBtr0112635;parent_type=mRNA" - - - -	4286	2,682,579 – 2,682,677	-	8	116	68.05	-1.58	0.41	0.817076
3121	dm3.chr2R	2,682,579 – 2,682,711		4287	2,682,603 – 2,682,711	-	8	120	77.43	-1.55	0.56	0.663098
3122	dm3.chr2R	2,710,329 – 2,710,424	- - - - - - - -	4288	2,710,329 – 2,710,424	-	8	111	72.58	-1.99	0.47	0.926652
3123	dm3.chr2R	2,716,683 – 2,716,771	- - - intron="intron;ID=intron_CG15236:1_CG15236:2;Name=CG15236-in;Parent=FBtr0086160;parent_type=mRNA" - - - -	4289	2,716,683 – 2,716,771	-	8	89	78.75	-1.31	0.58	0.547903
3124	dm3.chr2R	2,717,246 – 2,717,353	- - - - - - - -	4290	2,717,246 – 2,717,353	+	3	107	89.68	-2.63	0.72	0.861430
3125	dm3.chr2R	2,722,162 – 2,722,254	- - CDS="CDS;ID=CDS_CG15236:5_527;Name=CG15236-cds;Parent=FBtr0086160,FBtr0086161;parent_type=mRNA" - - - - -	4291	2,722,162 – 2,722,254	-	6	101	75.29	-1.08	0.59	0.500000
3126	dm3.chr2R	2,747,655 – 2,747,750	- - - - - - - -	4292	2,747,655 – 2,747,750	+	9	99	83.86	-2.32	0.57	0.830940
3127	dm3.chr2R	2,751,532 – 2,751,648	- - - intron="intron;ID=intron_CG9446:5_CG9446:6;Name=coro-in;Parent=FBtr0086207,FBtr0086208,FBtr0086209;parent_type=mRNA" - - - -	4293	2,751,532 – 2,751,625	+	9	102	78.53	-2.23	0.45	0.820115
				4294	2,751,532 – 2,751,625	-	9	102	78.53	-2.33	0.55	0.967791
				4295	2,751,552 – 2,751,648	+	9	108	72.20	-2.43	0.44	0.988294
				4296	2,751,552 – 2,751,648	-	9	108	72.20	-1.97	0.64	0.995582
3128	dm3.chr2R	2,770,625 – 2,770,752	- - - - - - - -	4297	2,770,625 – 2,770,722	+	6	117	71.13	-2.37	0.62	0.995784
				4298	2,770,625 – 2,770,722	-	6	117	71.13	-1.56	0.51	0.785902
				4299	2,770,647 – 2,770,752	+	6	117	70.12	-1.99	0.69	0.996385
				4300	2,770,647 – 2,770,752	-	6	117	70.12	-2.08	0.54	0.989960
3129	dm3.chr2R	2,772,417 – 2,772,469	- - - - - - - -	4301	2,772,417 – 2,772,469	+	3	52	90.97	-2.29	0.94	0.980495
3129	dm3.chr2R	2,772,417 – 2,772,469	- - - - - - - -	4302	2,772,417 – 2,772,469	-	3	52	90.97	-2.09	0.93	0.961896
3130	dm3.chr2R	2,787,434 – 2,787,534	- - - intron="intron;ID=intron_CG30158:2_CG30158:3;Name=CG30158-in;Parent=FBtr0086165;parent_type=mRNA" - - - -	4303	2,787,434 – 2,787,534	-	4	100	86.93	-1.87	0.85	0.884089
3131	dm3.chr2R	2,791,766 – 2,791,869	- - - intron="intron;ID=intron_CG30158:2_CG30158:3;Name=CG30158-in;Parent=FBtr0086165;parent_type=mRNA" - - - -	4304	2,791,766 – 2,791,869	+	6	108	70.01	-2.11	0.40	0.852857
3132	dm3.chr2R	2,795,476 – 2,795,538	- - - intron="intron;ID=intron_CG30158:3_CG30158:4;Name=CG30158-in;Parent=FBtr0086165;parent_type=mRNA" - - - -	4305	2,795,476 – 2,795,538	+	3	62	84.27	-2.77	0.89	0.993463
3132	dm3.chr2R	2,795,476 – 2,795,538		4306	2,795,476 – 2,795,538	-	3	62	84.27	-2.42	0.95	0.992270
3133	dm3.chr2R	2,799,309 – 2,799,419	- - - intron="intron;ID=intron_CG30158:5_CG30158:6;Name=CG30158-in;Parent=FBtr0086165;parent_type=mRNA" - - - -	4307	2,799,309 – 2,799,419	-	5	120	84.50	-1.60	0.72	0.527335
3134	dm3.chr2R	2,806,200 – 2,806,277	- - - intron="intron;ID=intron_CG30158:6_CG30158:7;Name=CG30158-in;Parent=FBtr0086165;parent_type=mRNA" - - - -	4308	2,806,200 – 2,806,277	-	7	82	85.41	-1.80	0.67	0.617665
3135	dm3.chr2R	2,806,400 – 2,806,499	- - - intron="intron;ID=intron_CG30158:6_CG30158:7;Name=CG30158-in;Parent=FBtr0086165;parent_type=mRNA" - - - -	4309	2,806,400 – 2,806,499	+	3	99	80.56	-1.94	0.74	0.822725
3136	dm3.chr2R	2,809,538 – 2,809,626	- - - - - - - -	4310	2,809,538 – 2,809,626	-	6	88	68.10	-1.18	0.47	0.621914
3137	dm3.chr2R	2,817,776 – 2,817,869	- - CDS="CDS;ID=CDS_FBgn0053558:10_582;Name=mim-cds;Parent=FBtr0302577,FBtr0302578,FBtr0302579,FBtr0302034,FBtr0302035;parent_type=mRNA" - - - - -	4311	2,817,776 – 2,817,869	+	10	105	81.03	-1.35	0.65	0.562764
3138	dm3.chr2R	2,819,468 – 2,819,600	- - CDS="CDS;ID=CDS_FBgn0053558:11_582;Name=mim-cds;Parent=FBtr0302579;parent_type=mRNA" - - - - -	4312	2,819,468 – 2,819,560	+	12	107	69.43	-1.19	0.41	0.591489
3138	dm3.chr2R	2,819,468 – 2,819,600		4313	2,819,491 – 2,819,600	+	12	112	73.50	-2.37	0.34	0.940706
3139	dm3.chr2R	2,819,758 – 2,819,915	- - CDS="CDS;ID=CDS_FBgn0053558:11_582;Name=mim-cds;Parent=FBtr0302579;parent_type=mRNA" - - - - -	4314	2,819,758 – 2,819,863	-	12	119	77.63	-1.28	0.53	0.567806
3139	dm3.chr2R	2,819,758 – 2,819,915		4315	2,819,823 – 2,819,915	-	9	95	72.03	-0.74	0.55	0.636980
3140	dm3.chr2R	2,823,945 – 2,824,074	- - - intron="intron;ID=intron_FBgn0053558:19_FBgn0053558:18;Name=mim-in;Parent=FBtr0302577,FBtr0302578,FBtr0302579,FBtr0113470,FBtr0302034,FBtr0302035;parent_type=mRNA" - - - -	4316	2,823,945 – 2,824,074	+	6	141	71.23	-1.64	0.67	0.984538
3141	dm3.chr2R	2,829,324 – 2,829,436	- - - intron="intron;ID=intron_FBgn0053558:21_FBgn0053558:20;Name=mim-in;Parent=FBtr0302577,FBtr0302578,FBtr0302579,FBtr0113470,FBtr0302034,FBtr0302035;parent_type=mRNA" - - - -	4317	2,829,324 – 2,829,436	-	6	121	78.72	-2.69	0.67	0.993913
3142	dm3.chr2R	2,834,282 – 2,834,379	FBnoncoding="tRNA;ID=FBtr0086190;Name=tRNA:K2:42Ea-RA;Parent=FBgn0011892;Dbxref=FlyBase_Annotation_IDs:CR30300-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna91" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|1.0e-28" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|8.8e-17" "unique_Noncode_2.0=u201439_mRNAlike\|7.7e-17" -	4318	2,834,282 – 2,834,379	+	10	109	69.11	-2.46	0.92	0.998668
3142	dm3.chr2R	2,834,282 – 2,834,379		4319	2,834,282 – 2,834,379	-	10	109	69.11	-0.99	0.86	0.989279
3143	dm3.chr2R	2,835,230 – 2,835,329	FBnoncoding="tRNA;ID=FBtr0086189;Name=tRNA:K2:42Eb-RA;Parent=FBgn0011893;Dbxref=FlyBase_Annotation_IDs:CR30301-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna90" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|1.1e-28" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|2.3e-17" "unique_Noncode_2.0=u201439_mRNAlike\|2.0e-17" -	4320	2,835,230 – 2,835,329	+	13	107	83.62	-2.66	0.93	0.997117
3143	dm3.chr2R	2,835,230 – 2,835,329		4321	2,835,230 – 2,835,329	-	13	107	83.62	-1.84	0.96	0.987261
3144	dm3.chr2R	2,835,782 – 2,835,865	FBnoncoding="tRNA;ID=FBtr0086188;Name=tRNA:K2:42Ec-RA;Parent=FBgn0011894;Dbxref=FlyBase_Annotation_IDs:CR30302-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna89" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|8.5e-29" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|1.8e-17" "unique_Noncode_2.0=u201439_mRNAlike\|1.6e-17" -	4322	2,835,782 – 2,835,865	+	12	85	82.10	-2.28	0.92	0.994931
3144	dm3.chr2R	2,835,782 – 2,835,865		4323	2,835,782 – 2,835,865	-	12	85	82.10	-2.14	0.93	0.993424
3145	dm3.chr2R	2,836,624 – 2,836,754	FBnoncoding="tRNA;ID=FBtr0086187;Name=tRNA:K2:42Ed-RA;Parent=FBgn0011895;Dbxref=FlyBase_Annotation_IDs:CR30303-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna88" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|1.4e-28" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|3.1e-17" "unique_Noncode_2.0=u201439_mRNAlike\|2.7e-17" -	4324	2,836,624 – 2,836,754	+	13	149	69.46	-1.97	0.78	0.998708
3145	dm3.chr2R	2,836,624 – 2,836,754		4325	2,836,624 – 2,836,754	-	13	149	69.46	-1.39	0.78	0.994726
3146	dm3.chr2R	2,840,154 – 2,840,236	- - - - - - - -	4326	2,840,154 – 2,840,236	+	4	93	53.17	-0.96	0.50	0.950807
3147	dm3.chr2R	2,871,296 – 2,871,389	- - - - - - - -	4327	2,871,296 – 2,871,389	-	5	105	79.39	-1.84	0.61	0.703909
3148	dm3.chr2R	2,871,632 – 2,871,813	- - - - - - - -	4328	2,871,632 – 2,871,734	-	4	118	77.90	-1.46	0.67	0.509005
3148	dm3.chr2R	2,871,632 – 2,871,813	- - - - - - - -	4329	2,871,694 – 2,871,813	-	5	120	91.62	-2.47	0.83	0.949894
3149	dm3.chr2R	2,872,232 – 2,872,299	- - - - - - - -	4330	2,872,232 – 2,872,299	-	7	67	78.11	-1.53	0.70	0.866124
3150	dm3.chr2R	2,882,932 – 2,883,039	- - - intron="intron;ID=intron_CG18817:2_CG18817:7;Name=Tsp42Ea-in;Parent=FBtr0086172;parent_type=mRNA" - - - -	4331	2,882,932 – 2,883,039	+	3	113	81.79	-2.32	0.67	0.838942
				4332	2,882,932 – 2,883,039	-	3	113	81.79	-2.69	0.61	0.897133
				4333	2,882,945 – 2,883,039	-	3	100	80.42	-2.36	0.58	0.688313
3151	dm3.chr2R	2,883,425 – 2,883,540	- - - intron="intron;ID=intron_CG18817:2_CG18817:7;Name=Tsp42Ea-in;Parent=FBtr0086172;parent_type=mRNA" - - - -	4334	2,883,425 – 2,883,528	+	4	105	71.96	-1.37	0.55	0.574853
3151	dm3.chr2R	2,883,425 – 2,883,540		4335	2,883,434 – 2,883,540	+	4	108	68.69	-1.17	0.63	0.847868
3152	dm3.chr2R	2,889,709 – 2,889,837	- - - - - - - -	4336	2,889,709 – 2,889,810	+	4	105	70.87	-1.47	0.56	0.757269
3152	dm3.chr2R	2,889,709 – 2,889,837	- - - - - - - -	4337	2,889,735 – 2,889,837	+	4	113	72.25	-1.47	0.61	0.763228
3153	dm3.chr2R	2,891,382 – 2,891,444	- - - - - - - -	4338	2,891,382 – 2,891,444	-	7	69	75.02	-1.51	0.53	0.723471
3154	dm3.chr2R	2,895,628 – 2,895,720	- - CDS="CDS;ID=CDS_FBgn0033124:3_524;Name=Tsp42Ec-cds;Parent=FBtr0086179;parent_type=mRNA" - - - - -	4339	2,895,628 – 2,895,720	+	12	95	68.04	-1.22	0.50	0.952758
3155	dm3.chr2R	2,900,092 – 2,900,187	- - - intron="intron;ID=intron_CG10106:1_CG10106:2;Name=Tsp42Ee-in;Parent=FBtr0086180;parent_type=mRNA" - - - -	4340	2,900,092 – 2,900,187	+	6	100	74.69	-2.01	0.73	0.992837
3156	dm3.chr2R	2,913,777 – 2,913,842	- - - intron="intron;ID=intron_FBgn0033127:1_FBgn0033127:2;Name=Tsp42Ef-in;Parent=FBtr0089023;parent_type=mRNA" - - - -	4341	2,913,777 – 2,913,842	+	8	65	67.88	-1.22	0.52	0.971355
3156	dm3.chr2R	2,913,777 – 2,913,842		4342	2,913,777 – 2,913,842	-	8	65	67.88	-0.59	0.56	0.856267
3157	dm3.chr2R	2,920,268 – 2,920,364	- - - intron="intron;ID=intron_FBgn0033128:4_FBgn0033128:5;Name=Tsp42Eg-in;Parent=FBtr0089024;parent_type=mRNA" - - - -	4343	2,920,268 – 2,920,364	+	11	111	64.40	-0.98	0.43	0.810550
3158	dm3.chr2R	2,922,528 – 2,922,578	- - - - - - - -	4344	2,922,528 – 2,922,578	+	5	64	59.87	-1.56	0.34	0.510134
3159	dm3.chr2R	2,926,394 – 2,926,553	- - - - - - - -	4345	2,926,394 – 2,926,553	+	3	171	70.72	-2.49	0.42	0.799317
3159	dm3.chr2R	2,926,394 – 2,926,553	- - - - - - - -	4346	2,926,394 – 2,926,553	-	3	171	70.72	-2.66	0.36	0.711729
3160	dm3.chr2R	2,927,234 – 2,927,328	- - - - - - - -	4347	2,927,234 – 2,927,328	-	8	99	70.91	-1.49	0.46	0.810936
3161	dm3.chr2R	2,957,469 – 2,957,564	FBnoncoding="tRNA;ID=FBtr0089059;Name=tRNA:CR30298-RA;Parent=FBgn0050298;Alias=CR30298-RA;Dbxref=FlyBase_Annotation_IDs:CR30298-RA;score_text=Weakly" tRNAscann="Thr_chr2R_trna87" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000411.1/14125-14198\|2.3e-23" - - "mirBase_v16=hsa-mir-3676\|1.6e-15"	4348	2,957,469 – 2,957,564	+	14	115	78.94	-1.05	0.65	0.562894
3162	dm3.chr2R	2,958,264 – 2,958,398	FBnoncoding="tRNA;ID=FBtr0089058;Name=tRNA:CR30299-RA;Parent=FBgn0050299;Alias=CR30299-RA;Dbxref=FlyBase_Annotation_IDs:CR30299-RA;score_text=Weakly" tRNAscann="Thr_chr2R_trna86" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000411.1/14125-14198\|1.4e-25" - - "mirBase_v16=hsa-mir-3676\|6.0e-16"	4349	2,958,264 – 2,958,398	+	13	138	71.74	-0.15	0.66	0.622348
3163	dm3.chr2R	2,982,118 – 2,982,216	- - - intron="intron;ID=intron_FBgn0028642:1_FBgn0028642:3;Name=esn-in;Parent=FBtr0089038;parent_type=mRNA" - - - -	4350	2,982,118 – 2,982,216	+	11	113	86.62	-1.94	0.78	0.929159
3164	dm3.chr2R	3,000,575 – 3,000,683	- - - intron="intron;ID=intron_FBgn0028642:3_FBgn0028642:4;Name=esn-in;Parent=FBtr0089038,FBtr0089039;parent_type=mRNA" - - - -	4351	3,000,575 – 3,000,683	+	6	108	68.60	-1.42	0.41	0.550653
3164	dm3.chr2R	3,000,575 – 3,000,683		4352	3,000,575 – 3,000,683	-	6	108	68.60	-1.39	0.50	0.860038
3165	dm3.chr2R	3,006,963 – 3,007,063	- - - intron="intron;ID=intron_FBgn0028642:4_FBgn0028642:5;Name=esn-in;Parent=FBtr0089038,FBtr0089039;parent_type=mRNA" - - - -	4353	3,006,963 – 3,007,063	+	9	106	73.63	-1.26	0.51	0.699607
3166	dm3.chr2R	3,013,875 – 3,013,993	- - CDS="CDS;ID=CDS_FBgn0028642:8_514;Name=esn-cds;Parent=FBtr0089038,FBtr0089039;parent_type=mRNA" - - - - -	4354	3,013,875 – 3,013,993	-	13	118	80.13	-1.66	0.56	0.858050
3167	dm3.chr2R	3,023,764 – 3,023,872	- - - - - - - -	4355	3,023,764 – 3,023,872	+	4	108	81.09	-1.25	0.81	0.663391
3168	dm3.chr2R	3,026,387 – 3,026,524	- - - - - - - -	4356	3,026,387 – 3,026,485	+	12	114	85.31	-2.41	0.55	0.797071
3168	dm3.chr2R	3,026,387 – 3,026,524	- - - - - - - -	4357	3,026,410 – 3,026,524	+	12	122	76.09	-1.89	0.56	0.975371
3169	dm3.chr2R	3,033,408 – 3,033,498	- - - - - - - -	4358	3,033,408 – 3,033,498	-	10	113	80.15	-2.54	0.65	0.983530
3170	dm3.chr2R	3,043,785 – 3,043,837	- - - - - - - -	4359	3,043,785 – 3,043,837	-	9	59	85.68	-1.79	0.67	0.597219
3171	dm3.chr2R	3,060,319 – 3,060,416	- - - - - - - -	4360	3,060,319 – 3,060,416	+	12	104	70.00	-0.39	0.55	0.535177
3172	dm3.chr2R	3,060,929 – 3,061,052	- - - intron="intron;ID=intron_CG11084:7_CG11084:2;Name=pk-in;Parent=FBtr0089043;parent_type=mRNA" - - - -	4361	3,060,929 – 3,061,052	+	8	131	74.52	-2.72	0.36	0.954281
3172	dm3.chr2R	3,060,929 – 3,061,052		4362	3,060,929 – 3,061,052	-	8	131	74.52	-1.90	0.39	0.645889
3173	dm3.chr2R	3,068,444 – 3,068,537	- - - - - - - -	4363	3,068,444 – 3,068,537	-	4	114	58.20	-1.26	0.47	0.891781
3174	dm3.chr2R	3,106,921 – 3,107,011	- - - intron="intron;ID=intron_CG11084:3_CG11084:4;Name=pk-in;Parent=FBtr0089042,FBtr0089043,FBtr0089044;parent_type=mRNA" - - - -	4364	3,106,921 – 3,107,011	-	6	100	66.94	-0.57	0.66	0.811793
3175	dm3.chr2R	3,113,885 – 3,113,989	- - - - - - - -	4365	3,113,885 – 3,113,989	-	5	104	89.15	-2.12	0.79	0.863002
3176	dm3.chr2R	3,118,490 – 3,118,615	- - - - - - - -	4366	3,118,490 – 3,118,591	+	12	120	80.49	-1.97	0.60	0.846281
				4367	3,118,490 – 3,118,591	-	12	120	80.49	-2.36	0.71	0.985335
				4368	3,118,519 – 3,118,615	+	11	115	67.44	-1.56	0.61	0.988338
				4369	3,118,519 – 3,118,615	-	11	115	67.44	-1.59	0.70	0.994355
3177	dm3.chr2R	3,123,740 – 3,123,832	- - - - - - - -	4370	3,123,740 – 3,123,832	+	6	96	57.33	-1.15	0.42	0.954768
3178	dm3.chr2R	3,133,810 – 3,133,920	- - - - - - - -	4371	3,133,810 – 3,133,920	-	6	111	68.12	-1.59	0.37	0.686838
3179	dm3.chr2R	3,143,196 – 3,143,351	- - - - - - - -	4372	3,143,196 – 3,143,351	-	9	173	64.08	-0.89	0.40	0.573615
3180	dm3.chr2R	3,145,996 – 3,146,100	- - - - - - - -	4373	3,145,996 – 3,146,100	+	4	104	79.50	-1.39	0.81	0.825487
3181	dm3.chr2R	3,165,800 – 3,165,871	- - - - - - - -	4374	3,165,800 – 3,165,871	+	7	71	61.32	-1.20	0.39	0.921070
3182	dm3.chr2R	3,175,729 – 3,175,785	- - - - - - - -	4375	3,175,729 – 3,175,785	+	5	56	96.43	-1.77	0.90	0.770634
3183	dm3.chr2R	3,184,601 – 3,184,707	- - CDS="CDS;ID=CDS_CG11101:2_524;Name=pwn-cds;Parent=FBtr0088962;parent_type=mRNA" - - - - -	4376	3,184,601 – 3,184,707	+	12	114	69.40	-1.22	0.39	0.624861
3184	dm3.chr2R	3,190,521 – 3,190,641	- - - - - - - -	4377	3,190,521 – 3,190,641	+	4	120	84.86	-1.82	0.68	0.517535
3185	dm3.chr2R	3,190,949 – 3,191,007	- - - - - - - -	4378	3,190,949 – 3,191,007	-	4	61	91.60	-3.00	0.89	0.993046
3186	dm3.chr2R	3,195,315 – 3,195,414	- - - - - - - -	4379	3,195,315 – 3,195,414	+	10	113	68.96	-2.00	0.38	0.924394
3187	dm3.chr2R	3,195,443 – 3,195,542	- - - - - - - -	4380	3,195,443 – 3,195,542	+	9	111	73.98	-1.90	0.37	0.542445
3188	dm3.chr2R	3,207,380 – 3,207,472	- - - - - - - -	4381	3,207,380 – 3,207,472	-	5	92	60.65	-2.86	0.58	0.999864
3189	dm3.chr2R	3,208,343 – 3,208,463	- - - intron="intron;ID=intron_FBgn0033159:2_FBgn0033159:1;Name=Dscam-in;Parent=FBtr0111079,FBtr0111080,FBtr0111074,FBtr0111075,FBtr0111076,FBtr0111077,FBtr0111078,FBtr0111069,FBtr0111070,FBtr0111071,FBtr0111072,FBtr0111073,FBtr0111064,FBtr0111101,FBtr0111065,FBtr0111066,FBtr0111067,FBtr0111068,FBtr0111060,FBtr0089016,FBtr0089018,FBtr0089019,FBtr0089020,FBtr0111061,FBtr0111102,FBtr0111062,FBtr0111081,FBtr0111082,FBtr0111083,FBtr0111084,FBtr0111085,FBtr0111086,FBtr0111087,FBtr0111088,FBtr0111103,FBtr0111089,FBtr0111090,FBtr0111091,FBtr0111092,FBtr0111093,FBtr0111094,FBtr0111095,FBtr0111096,FBtr0111097,FBtr0111098,FBtr0111099,FBtr0111100,FBtr0111049,FBtr0111050,FBtr0111051,FBtr0111052,FBtr0111053,FBtr0111054,FBtr0111055,FBtr0111056,FBtr0111057,FBtr0111058,FBtr0111059,FBtr0111063;parent_type=mRNA" - - - -	4382	3,208,343 – 3,208,463	+	5	122	66.96	-1.63	0.42	0.762615
3189	dm3.chr2R	3,208,343 – 3,208,463		4383	3,208,343 – 3,208,463	-	5	122	66.96	-1.93	0.41	0.893215
3190	dm3.chr2R	3,245,375 – 3,245,441	- - - intron="intron;ID=intron_FBgn0033159:83_FBgn0033159:70;Name=Dscam-in;Parent=FBtr0111073,FBtr0111093;parent_type=mRNA" - - - -	4384	3,245,375 – 3,245,441	-	12	66	66.44	0.15	0.63	0.666178
3191	dm3.chr2R	3,276,073 – 3,276,163	- - - intron="intron;ID=intron_CG11107:2_CG11107:3;Name=CG11107-in;Parent=FBtr0088966;parent_type=mRNA" - - - -	4385	3,276,073 – 3,276,163	+	3	107	73.04	-2.19	0.47	0.697293
3192	dm3.chr2R	3,298,695 – 3,298,787	- - - - - - - -	4386	3,298,695 – 3,298,787	-	4	113	75.12	-1.64	0.65	0.740431
3193	dm3.chr2R	3,305,797 – 3,305,896	- - - - - - - -	4387	3,305,797 – 3,305,896	-	4	110	81.31	-1.80	0.65	0.574162
3194	dm3.chr2R	3,338,063 – 3,338,181	- - - intron="intron;ID=intron_FBgn0050502:4_FBgn0050502:3;Name=CG30502-in;Parent=FBtr0300959;parent_type=mRNA" - - - -	4388	3,338,063 – 3,338,181	-	6	120	79.33	-2.11	0.53	0.848148
3195	dm3.chr2R	3,339,565 – 3,339,675	- - - - - - - -	4389	3,339,565 – 3,339,675	-	3	112	92.26	-1.55	0.87	0.576573
3196	dm3.chr2R	3,340,165 – 3,340,272	- - - - - - - -	4390	3,340,165 – 3,340,272	+	3	107	90.54	-2.52	0.70	0.734158
3197	dm3.chr2R	3,343,405 – 3,343,525	- - CDS="CDS;ID=CDS_FBgn0025885:3_670;Name=Inos-cds;Parent=FBtr0089329;parent_type=mRNA" - - - - -	4391	3,343,405 – 3,343,525	-	14	120	78.89	-1.28	0.55	0.608341
3198	dm3.chr2R	3,348,162 – 3,348,253	- - CDS="CDS;ID=CDS_FBgn0033177:1_659;Name=CG11141-cds;Parent=FBtr0088998;parent_type=mRNA" - - - - -	4392	3,348,162 – 3,348,253	+	12	111	67.97	-1.37	0.44	0.837141
3199	dm3.chr2R	3,358,674 – 3,358,767	- - - intron="intron;ID=intron_FBgn0010548:14_FBgn0010548:13;Name=Aldh-III-in;Parent=FBtr0088993,FBtr0088996,FBtr0300476,FBtr0300477,FBtr0300478,FBtr0300479,FBtr0300480,FBtr0300481;parent_type=mRNA" - - - -	4393	3,358,674 – 3,358,767	-	7	99	64.40	-2.34	0.31	0.959805
3200	dm3.chr2R	3,360,046 – 3,360,165	- - - intron="intron;ID=intron_FBgn0010548:14_FBgn0010548:13;Name=Aldh-III-in;Parent=FBtr0088993,FBtr0088996,FBtr0300476,FBtr0300477,FBtr0300478,FBtr0300479,FBtr0300480,FBtr0300481;parent_type=mRNA" - - - -	4394	3,360,046 – 3,360,165	-	5	119	88.02	-2.15	0.71	0.751081
3201	dm3.chr2R	3,363,619 – 3,363,786	- - - intron="intron;ID=intron_FBgn0010548:23_FBgn0010548:22;Name=Aldh-III-in;Parent=FBtr0300476,FBtr0300481;parent_type=mRNA" - - - -	4395	3,363,619 – 3,363,710	-	4	103	64.79	-1.74	0.41	0.803351
3201	dm3.chr2R	3,363,619 – 3,363,786		4396	3,363,682 – 3,363,786	+	3	115	85.80	-2.33	0.81	0.946327
3202	dm3.chr2R	3,370,959 – 3,371,133	- - - intron="intron;ID=intron_FBgn0259745:2_FBgn0259745:1;Name=wech-in;Parent=FBtr0300080,FBtr0300081,FBtr0300082,FBtr0300083,FBtr0300084;parent_type=mRNA" - - - -	4397	3,370,959 – 3,371,075	+	13	120	81.10	-1.66	0.63	0.858038
				4398	3,370,999 – 3,371,106	+	13	114	66.85	-1.80	0.33	0.913592
				4399	3,371,039 – 3,371,133	+	10	94	58.78	-0.55	0.38	0.566183
3203	dm3.chr2R	3,401,615 – 3,401,708	- - - - - - - -	4400	3,401,615 – 3,401,708	-	3	93	78.63	-2.05	0.78	0.933813
3204	dm3.chr2R	3,410,453 – 3,410,561	- - CDS="CDS;ID=CDS_CG10667:3_499;Name=Orc1-cds;Parent=FBtr0088959;parent_type=mRNA" - - - - -	4401	3,410,453 – 3,410,561	-	15	120	71.69	-1.30	0.43	0.782989
3205	dm3.chr2R	3,422,620 – 3,422,732	- - - intron="intron;ID=intron_FBgn0033189:2_FBgn0033189:3;Name=Cyt-b5-in;Parent=FBtr0088906;parent_type=mRNA" - - - -	4402	3,422,620 – 3,422,732	+	4	119	76.33	-1.60	0.58	0.514900
3206	dm3.chr2R	3,428,360 – 3,428,453	- - - - - - - -	4403	3,428,360 – 3,428,450	+	5	101	61.70	-1.19	0.48	0.930941
				4404	3,428,360 – 3,428,450	-	5	101	61.70	-1.19	0.48	0.930941
				4405	3,428,360 – 3,428,453	+	6	102	51.65	-1.17	0.37	0.944418
				4406	3,428,360 – 3,428,453	-	6	102	51.65	-0.88	0.39	0.894900
3207	dm3.chr2R	3,431,017 – 3,431,084	- - - - - - - -	4407	3,431,017 – 3,431,084	+	5	72	95.94	-0.63	1.01	0.526121
3207	dm3.chr2R	3,431,017 – 3,431,084	- - - - - - - -	4408	3,431,017 – 3,431,084	-	5	72	95.94	-1.73	1.02	0.972328
3208	dm3.chr2R	3,431,809 – 3,431,952	- - - - - - - -	4409	3,431,809 – 3,431,912	-	5	111	83.13	-1.51	0.83	0.828880
3208	dm3.chr2R	3,431,809 – 3,431,952	- - - - - - - -	4410	3,431,834 – 3,431,952	+	5	118	89.97	-1.42	0.86	0.608533
3209	dm3.chr2R	3,439,921 – 3,440,011	- - - intron="intron;ID=intron_FBgn0033192:1_FBgn0033192:2;Name=Corin-in;Parent=FBtr0088909;parent_type=mRNA" - - - -	4411	3,439,921 – 3,440,011	-	6	108	52.26	-1.67	0.20	0.528337
3210	dm3.chr2R	3,441,839 – 3,441,930	- - - intron="intron;ID=intron_FBgn0033192:1_FBgn0033192:2;Name=Corin-in;Parent=FBtr0088909;parent_type=mRNA" - - - -	4412	3,441,839 – 3,441,930	+	4	104	75.90	-1.53	0.65	0.718554
3211	dm3.chr2R	3,475,085 – 3,475,238	- - - - - - - -	4413	3,475,085 – 3,475,205	+	5	120	83.42	-1.99	0.65	0.755416
				4414	3,475,085 – 3,475,205	-	5	120	83.42	-1.80	0.73	0.817148
				4415	3,475,125 – 3,475,238	-	5	120	76.50	-1.19	0.66	0.585304
3212	dm3.chr2R	3,476,739 – 3,476,830	- - - - - - - -	4416	3,476,739 – 3,476,830	-	11	91	67.88	-1.07	0.41	0.737161
3213	dm3.chr2R	3,477,524 – 3,477,705	- - - - - - - -	4417	3,477,524 – 3,477,633	-	6	111	66.67	-1.12	0.41	0.597375
				4418	3,477,553 – 3,477,668	+	6	115	70.03	-1.55	0.40	0.677981
				4419	3,477,553 – 3,477,668	-	6	115	70.03	-2.60	0.55	0.998833
				4420	3,477,593 – 3,477,705	+	6	112	70.50	-1.52	0.44	0.782596
				4421	3,477,593 – 3,477,705	-	6	112	70.50	-2.16	0.39	0.938043
3214	dm3.chr2R	3,481,236 – 3,481,332	- - - - - - - -	4422	3,481,236 – 3,481,332	-	10	113	54.79	-0.86	0.46	0.968533
3215	dm3.chr2R	3,492,065 – 3,492,160	- - - intron="intron;ID=intron_FBgn0033196:9_FBgn0033196:8;Name=CG1358-in;Parent=FBtr0088950,FBtr0088948,FBtr0088949,FBtr0303287;parent_type=mRNA" - - - -	4423	3,492,065 – 3,492,160	+	6	120	71.19	-1.71	0.48	0.769450
3216	dm3.chr2R	3,512,422 – 3,512,478	- - - intron="intron;ID=intron_FBgn0050492:1_FBgn0050492:2;Name=CG30492-in;Parent=FBtr0088915,FBtr0088916;parent_type=mRNA" - - - -	4424	3,512,422 – 3,512,478	+	7	61	68.49	-1.45	0.46	0.897472
3216	dm3.chr2R	3,512,422 – 3,512,478		4425	3,512,422 – 3,512,478	-	7	61	68.49	-1.44	0.44	0.851222
3217	dm3.chr2R	3,521,876 – 3,521,994	- - - intron="intron;ID=intron_FBgn0050492:7_FBgn0050492:8;Name=CG30492-in;Parent=FBtr0088914,FBtr0088915,FBtr0088916,FBtr0088913,FBtr0113382;parent_type=mRNA" - - - -	4426	3,521,876 – 3,521,994	+	3	120	87.15	-2.55	0.86	0.982852
3217	dm3.chr2R	3,521,876 – 3,521,994		4427	3,521,876 – 3,521,994	-	3	120	87.15	-2.22	0.77	0.871473
3218	dm3.chr2R	3,522,873 – 3,522,967	- - - intron="intron;ID=intron_FBgn0050492:9_FBgn0050492:12;Name=CG30492-in;Parent=FBtr0088914,FBtr0088915,FBtr0088916,FBtr0088913,FBtr0113382;parent_type=mRNA" - - - -	4428	3,522,873 – 3,522,967	+	7	99	77.40	-2.11	0.83	0.993787
3219	dm3.chr2R	3,526,304 – 3,526,415	- - CDS="CDS;ID=CDS_FBgn0050492:12_578;Name=CG30492-cds;Parent=FBtr0113382;parent_type=mRNA" - - - - -	4429	3,526,304 – 3,526,415	+	13	118	74.61	-1.52	0.38	0.506440
3220	dm3.chr2R	3,546,584 – 3,546,658	- - - - - - - -	4430	3,546,584 – 3,546,658	+	4	79	69.28	-1.57	0.69	0.964637
3221	dm3.chr2R	3,556,527 – 3,556,650	- - - - - - - -	4431	3,556,527 – 3,556,650	+	6	123	57.57	-1.07	0.33	0.641740
3221	dm3.chr2R	3,556,527 – 3,556,650	- - - - - - - -	4432	3,556,527 – 3,556,650	-	6	123	57.57	-1.53	0.24	0.535731
3222	dm3.chr2R	3,560,184 – 3,560,293	- - - - - - - -	4433	3,560,184 – 3,560,293	+	8	120	72.70	-1.54	0.45	0.556451
3223	dm3.chr2R	3,568,330 – 3,568,470	- - - intron="intron;ID=intron_FBgn0033212:9_FBgn0033212:8;Name=CG1399-in;Parent=FBtr0088939,FBtr0088940,FBtr0300779,FBtr0300781;parent_type=mRNA" - - - -	4434	3,568,330 – 3,568,470	+	12	148	70.37	-0.61	0.50	0.609424
3224	dm3.chr2R	3,576,892 – 3,577,055	- - - intron="intron;ID=intron_FBgn0033212:24_FBgn0033212:23;Name=CG1399-in;Parent=FBtr0088939;parent_type=mRNA" - - - -	4435	3,576,892 – 3,577,055	+	4	165	71.61	-2.23	0.48	0.894352
3224	dm3.chr2R	3,576,892 – 3,577,055		4436	3,576,892 – 3,577,055	-	4	165	71.61	-1.83	0.46	0.558280
3225	dm3.chr2R	3,590,726 – 3,590,830	- - CDS="CDS;ID=CDS_FBgn0003733:1_577;Name=tor-cds;Parent=FBtr0112837;parent_type=mRNA" intron="intron;ID=intron_FBgn0003733:3_FBgn0003733:1;Name=tor-in;Parent=FBtr0112837;parent_type=mRNA" - - - -	4437	3,590,726 – 3,590,830	-	5	106	76.37	-1.67	0.51	0.541334
3226	dm3.chr2R	3,591,089 – 3,591,192	- - - intron="intron;ID=intron_FBgn0003733:3_FBgn0003733:1;Name=tor-in;Parent=FBtr0112837;parent_type=mRNA" - - - -	4438	3,591,089 – 3,591,192	+	6	120	69.46	-2.59	0.48	0.995029
3226	dm3.chr2R	3,591,089 – 3,591,192		4439	3,591,089 – 3,591,192	-	6	120	69.46	-2.18	0.69	0.997612
3227	dm3.chr2R	3,606,586 – 3,606,677	- - - - - - - -	4440	3,606,586 – 3,606,677	+	8	91	96.86	-0.95	1.02	0.788224
3228	dm3.chr2R	3,608,927 – 3,609,028	- - - intron="intron;ID=intron_FBgn0042135:6_FBgn0042135:5;Name=CG18812-in;Parent=FBtr0088937;parent_type=mRNA" - - - -	4441	3,608,927 – 3,609,028	-	6	109	71.49	-1.82	0.46	0.856852
3229	dm3.chr2R	3,612,387 – 3,612,477	- - - - - - - -	4442	3,612,387 – 3,612,477	-	8	102	64.98	-0.89	0.46	0.806863
3230	dm3.chr2R	3,617,370 – 3,617,463	- - - intron="intron;ID=intron_FBgn0042135:17_FBgn0042135:16;Name=CG18812-in;Parent=FBtr0088935;parent_type=mRNA" - - - -	4443	3,617,370 – 3,617,463	-	8	111	54.85	-1.08	0.34	0.859036
3231	dm3.chr2R	3,618,752 – 3,618,850	- - - intron="intron;ID=intron_FBgn0042135:17_FBgn0042135:16;Name=CG18812-in;Parent=FBtr0088935;parent_type=mRNA" - - - -	4444	3,618,752 – 3,618,850	+	5	101	81.81	-2.52	0.51	0.772535
3231	dm3.chr2R	3,618,752 – 3,618,850		4445	3,618,752 – 3,618,850	-	5	101	81.81	-2.50	0.45	0.542193
3232	dm3.chr2R	3,620,726 – 3,620,819	- - - intron="intron;ID=intron_FBgn0042135:17_FBgn0042135:16;Name=CG18812-in;Parent=FBtr0088935;parent_type=mRNA" - - - -	4446	3,620,726 – 3,620,819	+	6	98	72.56	-1.06	0.58	0.633628
3233	dm3.chr2R	3,629,293 – 3,629,389	- - CDS="CDS;ID=CDS_FBgn0050497:1_559;Name=CG30497-cds;Parent=FBtr0088934;parent_type=mRNA" - - - - -	4447	3,629,293 – 3,629,389	-	13	120	81.76	-1.48	0.65	0.567150
3234	dm3.chr2R	3,631,218 – 3,631,326	- - - - - - - -	4448	3,631,218 – 3,631,326	-	5	110	66.73	-1.57	0.54	0.929966
3235	dm3.chr2R	3,632,473 – 3,632,572	- - - - - - - -	4449	3,632,473 – 3,632,572	+	4	99	94.44	-2.71	0.91	0.985291
3235	dm3.chr2R	3,632,473 – 3,632,572	- - - - - - - -	4450	3,632,473 – 3,632,572	-	4	99	94.44	-1.69	0.86	0.591510
3236	dm3.chr2R	3,639,654 – 3,639,759	- - - - - - - -	4451	3,639,654 – 3,639,758	+	4	105	90.24	-2.11	0.84	0.895139
				4452	3,639,654 – 3,639,758	-	4	105	90.24	-1.98	0.85	0.869045
				4453	3,639,655 – 3,639,759	+	4	105	90.24	-2.22	0.84	0.923176
				4454	3,639,655 – 3,639,759	-	4	105	90.24	-2.05	0.83	0.857121
3237	dm3.chr2R	3,651,097 – 3,651,217	- - - - - - - -	4455	3,651,097 – 3,651,217	-	5	120	77.48	-1.62	0.57	0.681000
3238	dm3.chr2R	3,653,672 – 3,653,810	- - - - - - - -	4456	3,653,672 – 3,653,776	+	6	104	62.38	-2.13	0.26	0.664936
3238	dm3.chr2R	3,653,672 – 3,653,810	- - - - - - - -	4457	3,653,696 – 3,653,810	-	6	114	62.06	-1.30	0.39	0.654698
3239	dm3.chr2R	3,653,940 – 3,654,033	- - - - - - - -	4458	3,653,940 – 3,654,033	-	6	116	69.12	-0.63	0.66	0.641851
3240	dm3.chr2R	3,661,640 – 3,661,731	- - - - - - - -	4459	3,661,640 – 3,661,731	-	5	91	97.36	-1.64	0.95	0.847560
3241	dm3.chr2R	3,663,343 – 3,663,479	- - - - - - - -	4460	3,663,343 – 3,663,460	-	5	117	82.36	-2.02	0.57	0.585511
3241	dm3.chr2R	3,663,343 – 3,663,479	- - - - - - - -	4461	3,663,380 – 3,663,479	+	5	109	68.63	-1.85	0.58	0.978839
3242	dm3.chr2R	3,663,591 – 3,663,641	- - - - - - - -	4462	3,663,591 – 3,663,641	-	5	57	85.80	-2.63	0.57	0.771565
3243	dm3.chr2R	3,679,160 – 3,679,276	- - - - - - - -	4463	3,679,160 – 3,679,276	+	5	120	76.29	-2.44	0.58	0.967094
3244	dm3.chr2R	3,701,223 – 3,701,343	- - CDS="CDS;ID=CDS_FBgn0033226:5_522;Name=CG1882-cds;Parent=FBtr0088835,FBtr0088836,FBtr0088837;parent_type=mRNA" - - - - -	4464	3,701,223 – 3,701,343	+	15	120	72.51	-1.42	0.40	0.774659
3245	dm3.chr2R	3,716,509 – 3,716,593	- - - - - - - -	4465	3,716,509 – 3,716,593	+	6	84	72.54	-2.80	0.60	0.999186
3245	dm3.chr2R	3,716,509 – 3,716,593	- - - - - - - -	4466	3,716,509 – 3,716,593	-	6	84	72.54	-2.58	0.46	0.992789
3246	dm3.chr2R	3,719,619 – 3,719,703	- - - - - - - -	4467	3,719,619 – 3,719,703	+	6	84	72.54	-2.80	0.60	0.999186
3246	dm3.chr2R	3,719,619 – 3,719,703	- - - - - - - -	4468	3,719,619 – 3,719,703	-	6	84	72.54	-2.58	0.46	0.992789
3247	dm3.chr2R	3,727,113 – 3,727,227	- - - intron="intron;ID=intron_FBgn0085390:6_FBgn0085390:5;Name=Dgk-in;Parent=FBtr0112579,FBtr0112580,FBtr0112581;parent_type=mRNA" - - - -	4469	3,727,113 – 3,727,213	+	12	113	81.44	-3.11	0.51	0.989324
				4470	3,727,113 – 3,727,213	-	12	113	81.44	-2.76	0.57	0.984583
				4471	3,727,135 – 3,727,227	+	12	102	81.33	-3.00	0.48	0.985136
				4472	3,727,135 – 3,727,227	-	12	102	81.33	-3.10	0.54	0.994869
3248	dm3.chr2R	3,729,784 – 3,729,842	- - - intron="intron;ID=intron_FBgn0085390:6_FBgn0085390:5;Name=Dgk-in;Parent=FBtr0112579,FBtr0112580,FBtr0112581;parent_type=mRNA" - - - -	4473	3,729,784 – 3,729,842	+	4	58	88.56	-2.18	0.90	0.970843
3249	dm3.chr2R	3,737,064 – 3,737,114	- - - intron="intron;ID=intron_FBgn0085390:16_FBgn0085390:15;Name=Dgk-in;Parent=FBtr0112580,FBtr0112581;parent_type=mRNA" - - - -	4474	3,737,064 – 3,737,114	-	3	50	98.67	-2.21	0.94	0.943832
3250	dm3.chr2R	3,748,913 – 3,749,010	- - - intron="intron;ID=intron_FBgn0085390:24_FBgn0085390:23;Name=Dgk-in;Parent=FBtr0112580,FBtr0112581;parent_type=mRNA" - - - -	4475	3,748,913 – 3,749,010	+	6	116	64.59	-1.12	0.45	0.664960
3251	dm3.chr2R	3,774,909 – 3,775,023	- - - - - - - -	4476	3,774,909 – 3,775,023	+	10	119	77.58	-1.97	0.44	0.745411
3252	dm3.chr2R	3,786,340 – 3,786,396	- - - intron="intron;ID=intron_FBgn0050377:2_FBgn0050377:3;Name=CG30377-in;Parent=FBtr0088844;parent_type=mRNA" - - - -	4477	3,786,340 – 3,786,396	-	8	59	85.94	-1.82	0.77	0.835098
3253	dm3.chr2R	3,787,504 – 3,787,602	- - - intron="intron;ID=intron_FBgn0050377:2_FBgn0050377:3;Name=CG30377-in;Parent=FBtr0088844;parent_type=mRNA" - - - -	4478	3,787,504 – 3,787,602	-	6	116	61.32	-2.09	0.33	0.938011
3254	dm3.chr2R	3,787,697 – 3,787,790	- - - intron="intron;ID=intron_FBgn0050377:2_FBgn0050377:3;Name=CG30377-in;Parent=FBtr0088844;parent_type=mRNA" - - - -	4479	3,787,697 – 3,787,790	+	3	93	83.21	-1.23	0.86	0.564287
3254	dm3.chr2R	3,787,697 – 3,787,790		4480	3,787,697 – 3,787,790	-	3	93	83.21	-1.21	0.90	0.704832
3255	dm3.chr2R	3,790,012 – 3,790,152	- - - intron="intron;ID=intron_FBgn0050377:3_FBgn0050377:4;Name=CG30377-in;Parent=FBtr0088844;parent_type=mRNA" - - - -	4481	3,790,012 – 3,790,152	+	6	162	78.64	-1.80	0.54	0.571485
3256	dm3.chr2R	3,790,664 – 3,790,764	- - - intron="intron;ID=intron_FBgn0050377:3_FBgn0050377:4;Name=CG30377-in;Parent=FBtr0088844;parent_type=mRNA" - - - -	4482	3,790,664 – 3,790,764	-	5	101	84.08	-1.34	0.80	0.558336
3257	dm3.chr2R	3,793,394 – 3,793,487	- - CDS="CDS;ID=CDS_FBgn0050377:4_678;Name=CG30377-cds;Parent=FBtr0088844;parent_type=mRNA" - - - - -	4483	3,793,394 – 3,793,487	-	8	106	62.13	-0.83	0.57	0.972365
3258	dm3.chr2R	3,797,994 – 3,798,093	- - - intron="intron;ID=intron_FBgn0050377:4_FBgn0050377:5;Name=CG30377-in;Parent=FBtr0088844;parent_type=mRNA" - - - -	4484	3,797,994 – 3,798,093	-	6	104	68.42	-1.38	0.40	0.555344
3259	dm3.chr2R	3,799,137 – 3,799,229	- - - intron="intron;ID=intron_FBgn0050377:4_FBgn0050377:5;Name=CG30377-in;Parent=FBtr0088844;parent_type=mRNA" - - - -	4485	3,799,137 – 3,799,229	+	5	101	86.99	-2.28	0.77	0.930575
3260	dm3.chr2R	3,809,169 – 3,809,219	- - - intron="intron;ID=intron_FBgn0026393:3_FBgn0026393:2;Name=Or43b-in;Parent=FBtr0088887;parent_type=mRNA" - - - -	4486	3,809,169 – 3,809,219	-	3	50	94.67	-2.02	0.91	0.906373
3261	dm3.chr2R	3,834,626 – 3,834,760	- - - - - - - -	4487	3,834,626 – 3,834,728	+	5	110	88.40	-4.02	0.84	0.998772
				4488	3,834,626 – 3,834,728	-	5	110	88.40	-3.12	0.72	0.984510
				4489	3,834,654 – 3,834,760	+	5	110	78.54	-1.91	0.59	0.819068
				4490	3,834,654 – 3,834,760	-	5	110	78.54	-1.39	0.65	0.584763
3262	dm3.chr2R	3,863,876 – 3,863,996	- - CDS="CDS;ID=CDS_FBgn0033246:5_631;Name=ACC-cds;Parent=FBtr0113053;parent_type=mRNA" - - - - -	4491	3,863,876 – 3,863,996	-	15	120	80.04	-0.94	0.67	0.588626
3263	dm3.chr2R	3,875,040 – 3,875,144	- - - - - - - -	4492	3,875,040 – 3,875,144	+	4	114	83.44	-2.32	0.76	0.949908
3263	dm3.chr2R	3,875,040 – 3,875,144	- - - - - - - -	4493	3,875,040 – 3,875,144	-	4	114	83.44	-2.35	0.77	0.959130
3264	dm3.chr2R	3,905,992 – 3,906,126	- - - - - - - -	4494	3,905,992 – 3,906,102	+	8	112	65.95	-2.46	0.56	0.999228
				4495	3,905,992 – 3,906,102	-	8	112	65.95	-1.47	0.51	0.965685
				4496	3,906,029 – 3,906,126	+	4	102	61.92	-1.78	0.36	0.733649
				4497	3,906,029 – 3,906,126	-	4	102	61.92	-1.46	0.44	0.812048
3265	dm3.chr2R	3,912,950 – 3,913,042	- - - - - - - -	4498	3,912,950 – 3,913,042	-	8	95	63.23	-2.14	0.31	0.967638
3266	dm3.chr2R	3,914,498 – 3,914,587	- - - - - - - -	4499	3,914,498 – 3,914,587	-	4	99	66.96	-0.66	0.63	0.508505
3267	dm3.chr2R	3,914,813 – 3,914,867	- - - - - - - -	4500	3,914,813 – 3,914,867	+	3	54	97.53	-0.85	1.04	0.794907
3268	dm3.chr2R	3,918,247 – 3,918,349	- - - - - - - -	4501	3,918,247 – 3,918,349	+	6	105	62.70	-1.47	0.35	0.754771
3269	dm3.chr2R	3,928,727 – 3,928,833	- - CDS="CDS;ID=CDS_CG18455:4_517;Name=Optix-cds;Parent=FBtr0088866;parent_type=mRNA" - - - - -	4502	3,928,727 – 3,928,833	+	11	115	77.45	-1.58	0.45	0.520310
3270	dm3.chr2R	3,936,551 – 3,936,655	- - - - - - - -	4503	3,936,551 – 3,936,655	+	5	114	85.09	-2.03	0.67	0.681518
3271	dm3.chr2R	3,948,935 – 3,949,032	- - - intron="intron;ID=intron_CG12769:1_CG12769:2;Name=CG12769-in;Parent=FBtr0088827;parent_type=mRNA" - - - -	4504	3,948,935 – 3,949,032	+	10	111	89.17	-1.56	0.93	0.916430
3271	dm3.chr2R	3,948,935 – 3,949,032		4505	3,948,935 – 3,949,032	-	10	111	89.17	-1.77	0.76	0.607866
3272	dm3.chr2R	3,959,000 – 3,959,092	- - CDS="CDS;ID=CDS_FBgn0020279:9_661;Name=lig-cds;Parent=FBtr0304681,FBtr0304682;parent_type=mRNA" - - - - -	4506	3,959,000 – 3,959,092	-	8	101	67.07	-1.01	0.44	0.625918
3273	dm3.chr2R	3,965,558 – 3,965,669	- - - - - - - -	4507	3,965,558 – 3,965,669	+	6	115	73.98	-2.40	0.54	0.988316
3274	dm3.chr2R	3,970,664 – 3,970,774	- - - - - - - -	4508	3,970,664 – 3,970,774	+	5	114	89.78	-1.68	0.86	0.797191
3275	dm3.chr2R	3,973,074 – 3,973,179	- - - - - - - -	4509	3,973,074 – 3,973,169	-	13	112	66.05	-0.80	0.42	0.562929
3275	dm3.chr2R	3,973,074 – 3,973,179	- - - - - - - -	4510	3,973,084 – 3,973,179	-	13	107	65.12	-0.28	0.49	0.604545
3276	dm3.chr2R	3,979,052 – 3,979,121	- - - - - - - -	4511	3,979,052 – 3,979,121	+	6	69	71.41	-1.26	0.55	0.876239
3277	dm3.chr2R	4,004,555 – 4,004,649	- - - intron="intron;ID=intron_FBgn0050372:7_FBgn0050372:5;Name=CG30372-in;Parent=FBtr0300954;parent_type=mRNA" - - - -	4512	4,004,555 – 4,004,649	+	11	108	63.45	-1.47	0.36	0.909699
				4513	4,004,555 – 4,004,649	-	11	108	63.45	-1.82	0.30	0.902830
				4514	4,004,559 – 4,004,649	+	11	105	62.26	-1.48	0.39	0.960956
				4515	4,004,559 – 4,004,649	-	11	105	62.26	-1.66	0.28	0.784294
3278	dm3.chr2R	4,007,991 – 4,008,100	- - - intron="intron;ID=intron_FBgn0050372:15_FBgn0050372:13;Name=CG30372-in;Parent=FBtr0100140;parent_type=mRNA" - - - -	4516	4,007,991 – 4,008,100	+	5	118	85.74	-1.41	0.84	0.727443
3279	dm3.chr2R	4,010,231 – 4,010,322	- - - - - - - -	4517	4,010,231 – 4,010,322	+	7	91	74.45	-1.63	0.49	0.666199
3280	dm3.chr2R	4,024,409 – 4,024,469	- - - - - - - -	4518	4,024,409 – 4,024,469	-	5	77	59.25	-1.06	0.54	0.894065
3281	dm3.chr2R	4,030,850 – 4,030,953	- - - intron="intron;ID=intron_FBgn0033269:17_FBgn0033269:16;Name=Lpin-in;Parent=FBtr0303574;parent_type=mRNA" - - - -	4519	4,030,850 – 4,030,953	+	4	108	69.17	-2.00	0.58	0.983211
3282	dm3.chr2R	4,031,958 – 4,032,037	- - - intron="intron;ID=intron_FBgn0033269:17_FBgn0033269:16;Name=Lpin-in;Parent=FBtr0303574;parent_type=mRNA" - - - -	4520	4,031,958 – 4,032,037	-	5	79	75.30	-1.51	0.62	0.756256
3283	dm3.chr2R	4,045,955 – 4,046,053	FBnoncoding="tRNA;ID=FBtr0088787;Name=tRNA:CR30297-RA;Parent=FBgn0050297;Alias=CR30297-RA;Dbxref=FlyBase_Annotation_IDs:CR30297-RA;score_text=Weakly" tRNAscann="Ile_chr2R_trna11" - - "Rfam_10.0=RF00005;tRNA;ABJB010861939.1/779-852\|6.4e-27" - - "mirBase_v16=cre-MIR916\|6.5e-15"	4521	4,045,955 – 4,046,053	+	12	110	81.31	-0.92	0.90	0.846915
3283	dm3.chr2R	4,045,955 – 4,046,053		4522	4,045,955 – 4,046,053	-	12	110	81.31	-1.67	0.90	0.979040
3284	dm3.chr2R	4,054,726 – 4,054,830	- - CDS="CDS;ID=CDS_CG2173:4_504;Name=Rs1-cds;Parent=FBtr0088788;parent_type=mRNA" - - - - -	4523	4,054,726 – 4,054,830	-	13	113	74.11	-1.41	0.42	0.632622
3285	dm3.chr2R	4,087,630 – 4,087,685	- - - - - - - -	4524	4,087,630 – 4,087,685	+	5	56	92.10	-2.14	0.85	0.899597
3286	dm3.chr2R	4,093,588 – 4,093,674	- - - - - - - -	4525	4,093,588 – 4,093,674	+	4	86	89.86	-1.85	0.79	0.607620
3286	dm3.chr2R	4,093,588 – 4,093,674	- - - - - - - -	4526	4,093,588 – 4,093,674	-	4	86	89.86	-1.39	0.93	0.805620
3287	dm3.chr2R	4,100,010 – 4,100,117	- - CDS="CDS;ID=CDS_CG33087:8_501;Name=LRP1-cds;Parent=FBtr0088791;parent_type=mRNA" - - - - -	4527	4,100,010 – 4,100,117	+	13	117	72.63	-1.86	0.32	0.509774
3288	dm3.chr2R	4,119,460 – 4,119,572	- - CDS="CDS;ID=CDS_CG8704:1_499;Name=dpn-cds;Parent=FBtr0088803;parent_type=mRNA" - - - - -	4528	4,119,460 – 4,119,572	-	11	120	83.08	-2.44	0.46	0.725668
3289	dm3.chr2R	4,131,557 – 4,131,608	- - - - - - - -	4529	4,131,557 – 4,131,608	+	5	51	95.69	-3.28	0.99	0.997818
3289	dm3.chr2R	4,131,557 – 4,131,608	- - - - - - - -	4530	4,131,557 – 4,131,608	-	5	51	95.69	-2.17	0.96	0.973154
3290	dm3.chr2R	4,138,030 – 4,138,125	- - - - - - - -	4531	4,138,030 – 4,138,125	+	8	95	71.43	-0.96	0.55	0.721393
3290	dm3.chr2R	4,138,030 – 4,138,125	- - - - - - - -	4532	4,138,030 – 4,138,125	-	8	95	71.43	-2.33	0.60	0.998066
3291	dm3.chr2R	4,140,777 – 4,140,871	- - - - - - - -	4533	4,140,777 – 4,140,871	+	10	110	72.37	-1.03	0.59	0.815383
3292	dm3.chr2R	4,147,014 – 4,147,170	- - CDS="CDS;ID=CDS_FBgn0050369:1_649;Name=CG30369-cds;Parent=FBtr0088795;parent_type=mRNA" - - - - -	4534	4,147,014 – 4,147,134	-	6	120	79.89	-1.35	0.70	0.747443
3292	dm3.chr2R	4,147,014 – 4,147,170		4535	4,147,054 – 4,147,170	-	6	120	78.69	-1.28	0.68	0.679738
3293	dm3.chr2R	4,158,598 – 4,158,699	- - - - - - - -	4536	4,158,598 – 4,158,699	+	11	108	77.49	-1.32	0.56	0.584152
3294	dm3.chr2R	4,178,313 – 4,178,413	- - - - - - - -	4537	4,178,313 – 4,178,413	+	11	120	83.03	-2.15	0.61	0.836415
3295	dm3.chr2R	4,183,057 – 4,183,115	- - - - - - - -	4538	4,183,057 – 4,183,115	+	4	58	90.23	-2.52	0.93	0.989648
3296	dm3.chr2R	4,187,905 – 4,188,015	- - - - - - - -	4539	4,187,905 – 4,188,015	+	8	112	80.32	-1.27	0.78	0.828859
3297	dm3.chr2R	4,188,971 – 4,189,066	- - - - - - - -	4540	4,188,971 – 4,189,066	+	7	112	63.42	-1.77	0.67	0.998596
3298	dm3.chr2R	4,190,999 – 4,191,133	- - - - - - - -	4541	4,190,999 – 4,191,109	+	12	113	75.47	-2.82	0.69	0.999213
3298	dm3.chr2R	4,190,999 – 4,191,133	- - - - - - - -	4542	4,191,037 – 4,191,133	+	9	102	85.26	-3.00	0.53	0.941300
3299	dm3.chr2R	4,195,689 – 4,195,801	- - - - - - - -	4543	4,195,689 – 4,195,801	-	6	118	82.33	-1.68	0.63	0.552358
3300	dm3.chr2R	4,196,718 – 4,196,802	- - - - - - - -	4544	4,196,718 – 4,196,802	-	11	90	53.74	-1.02	0.40	0.959855
3301	dm3.chr2R	4,221,225 – 4,221,381	- - - intron="intron;ID=intron_FBgn0261588:2_FBgn0261588:3;Name=pdm3-in;Parent=FBtr0302920;parent_type=mRNA" - - - -	4545	4,221,225 – 4,221,316	+	9	108	68.30	-1.54	0.40	0.654845
				4546	4,221,247 – 4,221,354	+	12	118	73.38	-1.74	0.41	0.711231
				4547	4,221,247 – 4,221,354	-	12	118	73.38	-1.78	0.44	0.839268
				4548	4,221,276 – 4,221,381	+	12	114	79.94	-2.55	0.37	0.778266
3302	dm3.chr2R	4,222,041 – 4,222,134	- - - intron="intron;ID=intron_FBgn0261588:2_FBgn0261588:3;Name=pdm3-in;Parent=FBtr0302920;parent_type=mRNA" - - - -	4549	4,222,041 – 4,222,134	+	9	102	59.30	-1.52	0.27	0.600254
3303	dm3.chr2R	4,240,612 – 4,240,708	- - - intron="intron;ID=intron_FBgn0261588:3_FBgn0261588:5;Name=pdm3-in;Parent=FBtr0302919,FBtr0302920;parent_type=mRNA" - - - -	4550	4,240,612 – 4,240,708	+	5	96	96.04	-1.78	0.95	0.909269
3304	dm3.chr2R	4,243,777 – 4,243,829	- - - intron="intron;ID=intron_FBgn0261588:3_FBgn0261588:5;Name=pdm3-in;Parent=FBtr0302919,FBtr0302920;parent_type=mRNA" - - - -	4551	4,243,777 – 4,243,829	+	3	52	97.44	-0.80	1.00	0.542452
3305	dm3.chr2R	4,246,113 – 4,246,204	- - CDS="CDS;ID=CDS_FBgn0033283:1_583;Name=CG11635-cds;Parent=FBtr0088739;parent_type=mRNA" intron="intron;ID=intron_FBgn0261588:3_FBgn0261588:5;Name=pdm3-in;Parent=FBtr0302919,FBtr0302920;parent_type=mRNA" - - - -	4552	4,246,113 – 4,246,204	+	7	115	61.93	-1.18	0.41	0.754893
3305	dm3.chr2R	4,246,113 – 4,246,204		4553	4,246,113 – 4,246,204	-	7	115	61.93	-1.29	0.37	0.655744
3306	dm3.chr2R	4,248,507 – 4,248,603	- - - intron="intron;ID=intron_FBgn0261588:3_FBgn0261588:5;Name=pdm3-in;Parent=FBtr0302919,FBtr0302920;parent_type=mRNA" - - - -	4554	4,248,507 – 4,248,603	+	3	96	85.04	-1.28	0.89	0.678434
3307	dm3.chr2R	4,249,865 – 4,250,017	- - - intron="intron;ID=intron_FBgn0261588:3_FBgn0261588:5;Name=pdm3-in;Parent=FBtr0302919,FBtr0302920;parent_type=mRNA" - - - -	4555	4,249,865 – 4,249,980	-	6	116	77.24	-1.78	0.58	0.882721
				4556	4,249,900 – 4,250,017	+	6	120	74.47	-3.55	0.56	0.999630
				4557	4,249,900 – 4,250,017	-	6	120	74.47	-4.86	0.66	0.999910
3308	dm3.chr2R	4,252,805 – 4,252,863	- - - intron="intron;ID=intron_FBgn0261588:3_FBgn0261588:5;Name=pdm3-in;Parent=FBtr0302919,FBtr0302920;parent_type=mRNA" - - - -	4558	4,252,805 – 4,252,863	+	5	58	92.76	-2.27	0.80	0.852236
3309	dm3.chr2R	4,255,518 – 4,255,617	- - - intron="intron;ID=intron_FBgn0261588:3_FBgn0261588:5;Name=pdm3-in;Parent=FBtr0302919,FBtr0302920;parent_type=mRNA" - - - -	4559	4,255,518 – 4,255,617	-	3	99	82.47	-2.22	0.79	0.941232
3310	dm3.chr2R	4,258,595 – 4,258,686	- - - - - - - -	4560	4,258,595 – 4,258,686	+	6	97	70.91	-1.74	0.47	0.893278
3310	dm3.chr2R	4,258,595 – 4,258,686	- - - - - - - -	4561	4,258,595 – 4,258,686	-	6	97	70.91	-1.53	0.47	0.788525
3311	dm3.chr2R	4,263,057 – 4,263,147	- - - - - - - -	4562	4,263,057 – 4,263,147	-	12	116	82.80	-2.25	0.47	0.545757
3312	dm3.chr2R	4,264,635 – 4,264,767	- - - - - - - -	4563	4,264,635 – 4,264,727	+	11	109	79.99	-2.71	0.61	0.993372
				4564	4,264,635 – 4,264,727	-	11	109	79.99	-4.09	0.70	0.999716
				4565	4,264,668 – 4,264,765	-	10	107	82.25	-1.76	0.60	0.715271
				4566	4,264,672 – 4,264,767	-	10	103	82.12	-1.72	0.61	0.719830
3313	dm3.chr2R	4,266,539 – 4,266,633	- - - - - - - -	4567	4,266,539 – 4,266,633	-	11	117	78.94	-1.75	0.60	0.850382
3314	dm3.chr2R	4,275,364 – 4,275,458	- - CDS="CDS;ID=CDS_FBgn0261588:5_649;Name=pdm3-cds;Parent=FBtr0302919;parent_type=mRNA" - - - - -	4568	4,275,364 – 4,275,458	-	7	94	74.70	-1.21	0.52	0.604485
3315	dm3.chr2R	4,297,654 – 4,297,723	- - - intron="intron;ID=intron_FBgn0033289:6_FBgn0033289:5;Name=CG2121-in;Parent=FBtr0088764;parent_type=mRNA" - - - -	4569	4,297,654 – 4,297,723	-	4	69	92.51	-1.46	0.95	0.853742
3316	dm3.chr2R	4,298,126 – 4,298,240	- - - intron="intron;ID=intron_FBgn0033289:6_FBgn0033289:5;Name=CG2121-in;Parent=FBtr0088764;parent_type=mRNA" - - - -	4570	4,298,126 – 4,298,240	+	5	120	88.75	-2.45	0.86	0.979677
3317	dm3.chr2R	4,314,975 – 4,315,038	- - - intron="intron;ID=intron_CG2038:2_CG2038:3;Name=CSN7-in;Parent=FBtr0088742;parent_type=mRNA" - - - -	4571	4,314,975 – 4,315,038	+	7	77	65.62	-0.42	0.67	0.781283
3318	dm3.chr2R	4,332,483 – 4,332,583	FBnoncoding="pre_miRNA;ID=FBtr0304479;Name=mir-986-RM;Parent=FBgn0262316;Alias=CR43023-RM;Dbxref=FlyBase_Annotation_IDs:CR43023-RM,miRBase:MI0005845" - - intron="intron;ID=intron_CG2060:1_CG2060:2;Name=Cyp4e2-in;Parent=FBtr0088745;parent_type=mRNA" - - - "mirBase_v16=dme-mir-986\|1.0e-50"	4572	4,332,483 – 4,332,583	+	13	111	61.45	-3.23	0.12	0.974930
3318	dm3.chr2R	4,332,483 – 4,332,583		4573	4,332,483 – 4,332,583	-	13	111	61.45	-2.97	0.26	0.997847
3319	dm3.chr2R	4,354,839 – 4,354,941	- - - - - - - -	4574	4,354,839 – 4,354,941	-	12	110	71.96	-0.58	0.53	0.566373
3320	dm3.chr2R	4,362,589 – 4,362,695	- - - - - - - -	4575	4,362,589 – 4,362,695	-	3	107	89.72	-1.55	0.90	0.783878
3321	dm3.chr2R	4,365,507 – 4,365,597	- - - intron="intron;ID=intron_FBgn0050361:3_FBgn0050361:2;Name=mtt-in;Parent=FBtr0088756,FBtr0273325,FBtr0273326,FBtr0273327;parent_type=mRNA" - - - -	4576	4,365,507 – 4,365,597	+	6	104	73.45	-1.54	0.51	0.688796
3322	dm3.chr2R	4,368,609 – 4,368,713	- - - intron="intron;ID=intron_FBgn0050361:7_FBgn0050361:6;Name=mtt-in;Parent=FBtr0088756,FBtr0273325,FBtr0273326,FBtr0273327;parent_type=mRNA" - - - -	4577	4,368,609 – 4,368,713	+	3	130	59.34	-2.28	0.49	0.984863
3323	dm3.chr2R	4,383,023 – 4,383,134	- - - intron="intron;ID=intron_FBgn0050361:20_FBgn0050361:19;Name=mtt-in;Parent=FBtr0273325;parent_type=mRNA" - - - -	4578	4,383,023 – 4,383,134	+	6	120	71.74	-1.73	0.40	0.567673
3323	dm3.chr2R	4,383,023 – 4,383,134		4579	4,383,023 – 4,383,134	-	6	120	71.74	-1.33	0.49	0.603188
3324	dm3.chr2R	4,390,088 – 4,390,141	- - - intron="intron;ID=intron_FBgn0050361:20_FBgn0050361:19;Name=mtt-in;Parent=FBtr0273325;parent_type=mRNA" - - - -	4580	4,390,088 – 4,390,141	-	6	53	84.78	-1.78	0.72	0.783719
3325	dm3.chr2R	4,390,210 – 4,390,270	- - - intron="intron;ID=intron_FBgn0050361:20_FBgn0050361:19;Name=mtt-in;Parent=FBtr0273325;parent_type=mRNA" - - - -	4581	4,390,210 – 4,390,270	-	4	60	85.28	-1.70	0.75	0.627611
3326	dm3.chr2R	4,396,789 – 4,396,886	- - - intron="intron;ID=intron_FBgn0050361:20_FBgn0050361:19;Name=mtt-in;Parent=FBtr0273325;parent_type=mRNA" - - - -	4582	4,396,789 – 4,396,886	-	3	97	84.00	-2.02	0.93	0.975047
3327	dm3.chr2R	4,407,190 – 4,407,297	- - - intron="intron;ID=intron_FBgn0050361:20_FBgn0050361:19;Name=mtt-in;Parent=FBtr0273325;parent_type=mRNA" - - - -	4583	4,407,190 – 4,407,297	+	6	120	82.93	-1.71	0.64	0.525473
3328	dm3.chr2R	4,418,158 – 4,418,250	- - - intron="intron;ID=intron_FBgn0050361:21_FBgn0050361:20;Name=mtt-in;Parent=FBtr0273325,FBtr0273326;parent_type=mRNA" - - - -	4584	4,418,158 – 4,418,250	-	6	120	64.01	-1.24	0.57	0.936393
3329	dm3.chr2R	4,418,529 – 4,418,646	- - - intron="intron;ID=intron_FBgn0050361:21_FBgn0050361:20;Name=mtt-in;Parent=FBtr0273325,FBtr0273326;parent_type=mRNA" - - - -	4585	4,418,529 – 4,418,646	-	4	117	72.61	-1.74	0.51	0.506384
3330	dm3.chr2R	4,422,551 – 4,422,657	- - - - - - - -	4586	4,422,551 – 4,422,657	+	5	120	80.57	-1.90	0.66	0.816977
3331	dm3.chr2R	4,423,017 – 4,423,128	- - - - - - - -	4587	4,423,017 – 4,423,128	+	7	116	65.69	-2.18	0.20	0.521541
3332	dm3.chr2R	4,426,612 – 4,426,704	- - - - - - - -	4588	4,426,612 – 4,426,704	-	4	101	67.36	-3.15	0.33	0.978212
3333	dm3.chr2R	4,431,930 – 4,432,020	- - - - - - - -	4589	4,431,930 – 4,432,020	-	5	90	89.63	-2.16	0.69	0.576859
3334	dm3.chr2R	4,432,972 – 4,433,087	- - - - - - - -	4590	4,432,972 – 4,433,087	-	3	120	93.89	-2.27	0.93	0.967442
3335	dm3.chr2R	4,436,574 – 4,436,667	- - - - - - - -	4591	4,436,574 – 4,436,667	+	9	104	68.30	-1.52	0.45	0.879276
3336	dm3.chr2R	4,443,860 – 4,443,986	- - - - - - - -	4592	4,443,860 – 4,443,986	+	6	128	80.24	-1.78	0.58	0.706251
3337	dm3.chr2R	4,446,725 – 4,446,832	- - - - - - - -	4593	4,446,725 – 4,446,821	+	8	99	74.26	-2.12	0.44	0.928789
3337	dm3.chr2R	4,446,725 – 4,446,832	- - - - - - - -	4594	4,446,739 – 4,446,832	+	8	102	66.52	-1.22	0.41	0.728666
3338	dm3.chr2R	4,465,260 – 4,465,355	- - - intron="intron;ID=intron_FBgn0259226:9_FBgn0259226:8;Name=CG42326-in;Parent=FBtr0299788;parent_type=mRNA" - - - -	4595	4,465,260 – 4,465,355	+	4	97	88.56	-0.88	0.94	0.548542
3339	dm3.chr2R	4,468,826 – 4,468,928	- - CDS="CDS;ID=CDS_FBgn0259226:11_578;Name=CG42326-cds;Parent=FBtr0299787;parent_type=mRNA" - - - - -	4596	4,468,826 – 4,468,928	+	7	117	76.12	-1.19	0.57	0.500000
3340	dm3.chr2R	4,475,730 – 4,475,828	- - - - - - - -	4597	4,475,730 – 4,475,828	-	6	120	82.59	-1.90	0.72	0.839514
3341	dm3.chr2R	4,477,794 – 4,477,853	- - - - - - - -	4598	4,477,794 – 4,477,853	-	5	60	82.15	-3.32	0.56	0.992548
3342	dm3.chr2R	4,482,327 – 4,482,399	- - CDS="CDS;ID=CDS_FBgn0033308:2_584;Name=CG8736-cds;Parent=FBtr0290280;parent_type=mRNA" - - - - -	4599	4,482,327 – 4,482,399	+	7	75	71.01	-1.11	0.47	0.521735
3343	dm3.chr2R	4,492,605 – 4,492,688	- - - intron="intron;ID=intron_FBgn0033310:1_FBgn0033310:2;Name=rgr-in;Parent=FBtr0301542;parent_type=mRNA" - - - -	4600	4,492,605 – 4,492,688	+	4	91	77.88	-2.46	0.68	0.983697
3344	dm3.chr2R	4,493,642 – 4,493,734	- - - intron="intron;ID=intron_FBgn0033310:1_FBgn0033310:2;Name=rgr-in;Parent=FBtr0301542;parent_type=mRNA" - - - -	4601	4,493,642 – 4,493,734	-	6	96	71.96	-1.12	0.60	0.824387
3345	dm3.chr2R	4,500,515 – 4,500,607	- - CDS="CDS;ID=CDS_CG8642:1_520;Name=CG8642-cds;Parent=FBtr0088729;parent_type=mRNA" - - - - -	4602	4,500,515 – 4,500,607	-	11	98	68.64	-0.75	0.45	0.510429
3346	dm3.chr2R	4,502,947 – 4,503,003	- - - - - - - -	4603	4,502,947 – 4,503,003	+	4	65	62.81	-0.76	0.70	0.882597
3347	dm3.chr2R	4,511,383 – 4,511,478	- - - - - - - -	4604	4,511,383 – 4,511,478	-	3	95	93.55	-1.92	0.85	0.720492
3348	dm3.chr2R	4,530,082 – 4,530,172	- - - - - - - -	4605	4,530,082 – 4,530,172	-	5	90	66.52	-1.50	0.36	0.537013
3349	dm3.chr2R	4,551,730 – 4,551,825	- - CDS="CDS;ID=CDS_CG2411:6_543;Name=ptc-cds;Parent=FBtr0089427;parent_type=mRNA" - - - - -	4606	4,551,730 – 4,551,825	+	11	95	91.56	-2.22	0.78	0.884734
3349	dm3.chr2R	4,551,730 – 4,551,825		4607	4,551,730 – 4,551,825	-	11	95	91.56	-1.62	0.81	0.606302
3350	dm3.chr2R	4,559,783 – 4,559,886	- - - intron="intron;ID=intron_CG8732:60_CG8732:3;Name=Acsl-in;Parent=FBtr0100429;parent_type=mRNA" - - - -	4608	4,559,783 – 4,559,886	+	5	103	91.17	-2.26	0.87	0.955429
3350	dm3.chr2R	4,559,783 – 4,559,886		4609	4,559,783 – 4,559,886	-	5	103	91.17	-2.03	0.74	0.575063
3351	dm3.chr2R	4,562,340 – 4,562,401	- - CDS="CDS;ID=CDS_CG8732:2_520;Name=Acsl-cds;Parent=FBtr0088699;parent_type=mRNA" - - - - -	4610	4,562,340 – 4,562,401	+	11	74	71.23	-0.23	0.73	0.533553
3352	dm3.chr2R	4,568,455 – 4,568,559	- - CDS="CDS;ID=CDS_CG8732:8_537;Name=Acsl-cds;Parent=FBtr0100428;parent_type=mRNA" - - - - -	4611	4,568,455 – 4,568,559	+	14	108	80.47	-1.45	0.53	0.520956
3353	dm3.chr2R	4,580,625 – 4,580,680	- - - - - - - -	4612	4,580,625 – 4,580,680	-	5	55	88.71	-3.08	0.98	0.997965
3354	dm3.chr2R	4,580,766 – 4,580,833	- - - - - - - -	4613	4,580,766 – 4,580,833	+	7	71	76.74	-1.67	0.48	0.632172
3355	dm3.chr2R	4,602,916 – 4,603,033	- - - - - - - -	4614	4,602,916 – 4,603,033	+	5	118	89.75	-2.66	0.59	0.678528
3355	dm3.chr2R	4,602,916 – 4,603,033	- - - - - - - -	4615	4,602,916 – 4,603,033	-	5	118	89.75	-2.79	0.73	0.955166
3356	dm3.chr2R	4,607,000 – 4,607,126	- - - intron="intron;ID=intron_FBgn0040777:2_FBgn0040777:1;Name=CG14767-in;Parent=FBtr0088718,FBtr0088719,FBtr0088720;parent_type=mRNA" - - - -	4616	4,607,000 – 4,607,126	+	5	138	75.84	-2.13	0.50	0.846793
3356	dm3.chr2R	4,607,000 – 4,607,126		4617	4,607,000 – 4,607,126	-	5	138	75.84	-2.47	0.45	0.896379
3357	dm3.chr2R	4,609,507 – 4,609,630	- - - intron="intron;ID=intron_FBgn0040777:6_FBgn0040777:3;Name=CG14767-in;Parent=FBtr0088720;parent_type=mRNA" - - - -	4618	4,609,507 – 4,609,602	+	6	109	85.82	-3.61	0.68	0.996762
3357	dm3.chr2R	4,609,507 – 4,609,630		4619	4,609,538 – 4,609,630	+	6	103	77.33	-2.15	0.46	0.716140
3358	dm3.chr2R	4,612,461 – 4,612,552	- - - intron="intron;ID=intron_CG8411:1_CG8411:2;Name=gcl-in;Parent=FBtr0088710;parent_type=mRNA" - - - -	4620	4,612,461 – 4,612,552	+	11	104	75.25	-1.06	0.66	0.852513
3359	dm3.chr2R	4,631,666 – 4,631,758	- - - intron="intron;ID=intron_FBgn0027585:1_FBgn0027585:2;Name=CG8740-in;Parent=FBtr0290115;parent_type=mRNA" - - - -	4621	4,631,666 – 4,631,758	+	5	99	72.89	-1.36	0.63	0.854179
3360	dm3.chr2R	4,632,093 – 4,632,211	- - - intron="intron;ID=intron_FBgn0027585:1_FBgn0027585:2;Name=CG8740-in;Parent=FBtr0290115;parent_type=mRNA" - - - -	4622	4,632,093 – 4,632,211	-	3	118	88.86	-0.97	0.95	0.607033
3361	dm3.chr2R	4,636,873 – 4,636,967	- - - intron="intron;ID=intron_FBgn0027585:4_FBgn0027585:5;Name=CG8740-in;Parent=FBtr0088713;parent_type=mRNA" - - - -	4623	4,636,873 – 4,636,967	-	6	116	76.88	-2.05	0.48	0.734175
3362	dm3.chr2R	4,640,746 – 4,640,840	- - CDS="CDS;ID=CDS_FBgn0027585:5_524;Name=CG8740-cds;Parent=FBtr0088711,FBtr0088712,FBtr0088713;parent_type=mRNA" - - - - -	4624	4,640,746 – 4,640,840	-	13	115	72.51	-1.13	0.55	0.779267
3363	dm3.chr2R	4,641,841 – 4,641,949	- - CDS="CDS;ID=CDS_FBgn0027585:6_524;Name=CG8740-cds;Parent=FBtr0088711,FBtr0088712,FBtr0088713;parent_type=mRNA" - - - - -	4625	4,641,841 – 4,641,949	+	12	111	71.21	-1.43	0.50	0.951814
3364	dm3.chr2R	4,642,375 – 4,642,481	- - - - - - - -	4626	4,642,375 – 4,642,481	+	7	112	70.31	-0.76	0.56	0.579835
3365	dm3.chr2R	4,643,220 – 4,643,319	- - - intron="intron;ID=intron_FBgn0027585:6_FBgn0027585:7;Name=CG8740-in;Parent=FBtr0088711,FBtr0088712,FBtr0088713,FBtr0290115;parent_type=mRNA" - - - -	4627	4,643,220 – 4,643,319	+	7	106	68.66	-1.14	0.49	0.646742
3366	dm3.chr2R	4,654,073 – 4,654,176	- - - - - - - -	4628	4,654,073 – 4,654,176	-	11	120	82.43	-2.00	0.65	0.906049
3367	dm3.chr2R	4,658,695 – 4,658,796	- - - - - - - -	4629	4,658,695 – 4,658,796	-	9	106	70.97	-1.02	0.45	0.624174
3368	dm3.chr2R	4,671,719 – 4,671,827	- - - - - - - -	4630	4,671,719 – 4,671,827	-	3	118	88.25	-2.00	0.90	0.942633
3369	dm3.chr2R	4,674,813 – 4,674,922	- - - - - - - -	4631	4,674,813 – 4,674,922	-	7	109	69.63	-1.36	0.46	0.728317
3370	dm3.chr2R	4,688,949 – 4,689,106	- - - intron="intron;ID=intron_FBgn0024189:1_FBgn0024189:2;Name=sns-in;Parent=FBtr0111043,FBtr0088635;parent_type=mRNA" - - - -	4632	4,688,949 – 4,689,041	+	5	120	67.07	-1.92	0.36	0.593921
3370	dm3.chr2R	4,688,949 – 4,689,106		4633	4,689,002 – 4,689,106	-	4	110	64.06	-1.01	0.59	0.886401
3371	dm3.chr2R	4,692,656 – 4,692,711	- - - intron="intron;ID=intron_FBgn0024189:1_FBgn0024189:2;Name=sns-in;Parent=FBtr0111043,FBtr0088635;parent_type=mRNA" - - - -	4634	4,692,656 – 4,692,711	+	5	55	81.64	-2.63	0.48	0.850819
3371	dm3.chr2R	4,692,656 – 4,692,711		4635	4,692,656 – 4,692,711	-	5	55	81.64	-2.30	0.76	0.981196
3372	dm3.chr2R	4,695,152 – 4,695,259	- - - intron="intron;ID=intron_FBgn0024189:1_FBgn0024189:2;Name=sns-in;Parent=FBtr0111043,FBtr0088635;parent_type=mRNA" - - - -	4636	4,695,152 – 4,695,259	-	6	121	74.80	-2.01	0.46	0.760626
3373	dm3.chr2R	4,701,567 – 4,701,695	- - - intron="intron;ID=intron_FBgn0024189:2_FBgn0024189:3;Name=sns-in;Parent=FBtr0111043,FBtr0088635;parent_type=mRNA" - - - -	4637	4,701,567 – 4,701,695	-	8	140	73.73	-2.48	0.35	0.808672
3374	dm3.chr2R	4,706,444 – 4,706,543	- - - intron="intron;ID=intron_FBgn0024189:2_FBgn0024189:3;Name=sns-in;Parent=FBtr0111043,FBtr0088635;parent_type=mRNA" - - - -	4638	4,706,444 – 4,706,543	-	5	105	63.31	-2.04	0.34	0.921274
3375	dm3.chr2R	4,712,450 – 4,712,550	- - - intron="intron;ID=intron_FBgn0024189:6_FBgn0024189:7;Name=sns-in;Parent=FBtr0111043,FBtr0088635;parent_type=mRNA" - - - -	4639	4,712,450 – 4,712,550	-	8	112	73.67	-1.50	0.42	0.500000
3376	dm3.chr2R	4,721,694 – 4,721,802	- - - intron="intron;ID=intron_FBgn0024189:17_FBgn0024189:18;Name=sns-in;Parent=FBtr0111043;parent_type=mRNA" - - - -	4640	4,721,694 – 4,721,802	+	5	109	67.53	-1.27	0.52	0.897754
3377	dm3.chr2R	4,727,225 – 4,727,368	- - - intron="intron;ID=intron_FBgn0024189:18_FBgn0024189:19;Name=sns-in;Parent=FBtr0111043,FBtr0088635;parent_type=mRNA" - - - -	4641	4,727,225 – 4,727,368	-	6	147	87.67	-2.17	0.63	0.600340
3378	dm3.chr2R	4,727,703 – 4,727,829	- - - intron="intron;ID=intron_FBgn0024189:18_FBgn0024189:19;Name=sns-in;Parent=FBtr0111043,FBtr0088635;parent_type=mRNA" - - - -	4642	4,727,703 – 4,727,795	+	6	102	84.62	-2.01	0.67	0.767280
				4643	4,727,703 – 4,727,795	-	6	102	84.62	-1.69	0.71	0.633982
				4644	4,727,724 – 4,727,829	+	6	114	78.45	-2.27	0.44	0.707517
3379	dm3.chr2R	4,739,725 – 4,739,818	- - CDS="CDS;ID=CDS_FBgn0024189:22_545;Name=sns-cds;Parent=FBtr0111043;parent_type=mRNA" - - - - -	4645	4,739,725 – 4,739,818	+	12	105	73.58	-0.99	0.48	0.522467
3380	dm3.chr2R	4,741,323 – 4,741,381	- - - - - - - -	4646	4,741,323 – 4,741,381	+	7	59	92.32	-1.28	0.91	0.663232
3381	dm3.chr2R	4,750,455 – 4,750,539	- - CDS="CDS;ID=CDS_FBgn0011286:3_582;Name=Rya-r44F-cds;Parent=FBtr0088638,FBtr0088639,FBtr0088640,FBtr0304568,FBtr0304569,FBtr0304570,FBtr0304571,FBtr0304572;parent_type=mRNA" - - - - -	4647	4,750,455 – 4,750,539	-	14	86	75.60	-0.68	0.60	0.548686
3382	dm3.chr2R	4,752,131 – 4,752,222	- - - intron="intron;ID=intron_FBgn0011286:3_FBgn0011286:4;Name=Rya-r44F-in;Parent=FBtr0088638,FBtr0088639,FBtr0088640,FBtr0088637,FBtr0304568,FBtr0304569,FBtr0304570,FBtr0304571,FBtr0304572;parent_type=mRNA" - - - -	4648	4,752,131 – 4,752,222	+	9	116	63.75	-1.38	0.36	0.718916
3383	dm3.chr2R	4,754,477 – 4,754,593	- - CDS="CDS;ID=CDS_FBgn0011286:6_582;Name=Rya-r44F-cds;Parent=FBtr0088638,FBtr0088639,FBtr0088640,FBtr0304568,FBtr0304569,FBtr0304570,FBtr0304571,FBtr0304572;parent_type=mRNA" - - - - -	4649	4,754,477 – 4,754,593	-	15	122	70.83	-1.48	0.34	0.610992
3384	dm3.chr2R	4,755,937 – 4,756,071	- - CDS="CDS;ID=CDS_FBgn0011286:10_631;Name=Rya-r44F-cds;Parent=FBtr0088637;parent_type=mRNA" - - - - -	4650	4,755,937 – 4,756,057	+	15	120	79.89	-1.76	0.47	0.716387
3384	dm3.chr2R	4,755,937 – 4,756,071		4651	4,755,977 – 4,756,071	+	14	94	80.54	-1.97	0.42	0.546668
3385	dm3.chr2R	4,767,551 – 4,767,671	- - CDS="CDS;ID=CDS_FBgn0011286:26_631;Name=Rya-r44F-cds;Parent=FBtr0088637;parent_type=mRNA" - - - - -	4652	4,767,551 – 4,767,671	+	15	120	84.13	-2.28	0.55	0.896003
3386	dm3.chr2R	4,771,123 – 4,771,322	- - CDS="CDS;ID=CDS_FBgn0011286:30_582;Name=Rya-r44F-cds;Parent=FBtr0088638,FBtr0088639,FBtr0088640,FBtr0304568,FBtr0304569,FBtr0304570,FBtr0304571,FBtr0304572;parent_type=mRNA" - - - - -	4653	4,771,123 – 4,771,242	-	15	120	88.30	-3.83	0.70	0.998517
				4654	4,771,162 – 4,771,282	+	15	120	86.20	-2.32	0.49	0.638086
				4655	4,771,162 – 4,771,282	-	15	120	86.20	-3.65	0.64	0.998447
				4656	4,771,202 – 4,771,322	-	15	120	85.44	-2.17	0.67	0.938046
3387	dm3.chr2R	4,773,697 – 4,773,816	- - CDS="CDS;ID=CDS_FBgn0011286:35_631;Name=Rya-r44F-cds;Parent=FBtr0088637;parent_type=mRNA" - - - - -	4657	4,773,697 – 4,773,816	+	7	119	80.31	-2.27	0.60	0.964267
3387	dm3.chr2R	4,773,697 – 4,773,816		4658	4,773,697 – 4,773,816	-	7	119	80.31	-1.67	0.75	0.942714
3388	dm3.chr2R	4,789,945 – 4,790,082	- - CDS="CDS;ID=CDS_CG8261:6_520;Name=Ggamma1-cds;Parent=FBtr0088649;parent_type=mRNA" - - - - -	4659	4,789,945 – 4,790,065	+	15	121	78.71	-2.98	0.20	0.534366
				4660	4,789,945 – 4,790,065	-	15	121	78.71	-2.55	0.27	0.534743
				4661	4,789,970 – 4,790,082	+	15	115	72.11	-2.84	0.20	0.845331
				4662	4,789,970 – 4,790,082	-	15	115	72.11	-2.77	0.29	0.973627
3389	dm3.chr2R	4,795,913 – 4,796,023	- - - intron="intron;ID=intron_CG30349:2_CG30349:3;Name=CG30349-in;Parent=FBtr0088650;parent_type=mRNA" - - - -	4663	4,795,913 – 4,796,023	+	11	115	65.71	-1.39	0.29	0.513547
3390	dm3.chr2R	4,798,926 – 4,799,046	- - CDS="CDS;ID=CDS_CG8251:4_517;Name=Pgi-cds;Parent=FBtr0088679,FBtr0088680,FBtr0088681;parent_type=mRNA" - - - - -	4664	4,798,926 – 4,799,046	+	14	120	75.08	-1.84	0.33	0.554175
3391	dm3.chr2R	4,800,842 – 4,800,914	- - - intron="intron;ID=intron_CG8251:8_CG8251:2;Name=Pgi-in;Parent=FBtr0088681;parent_type=mRNA" - - - -	4665	4,800,842 – 4,800,914	-	4	78	89.33	-2.23	0.74	0.754238
3392	dm3.chr2R	4,828,356 – 4,828,455	- - - - - - - -	4666	4,828,356 – 4,828,455	+	9	111	70.56	-1.23	0.50	0.807501
3393	dm3.chr2R	4,838,711 – 4,838,775	- - - - - - - -	4667	4,838,711 – 4,838,775	+	3	64	94.79	-1.77	1.00	0.963480
3394	dm3.chr2R	4,840,216 – 4,840,309	- - - - - - - -	4668	4,840,216 – 4,840,309	-	9	99	63.25	-1.73	0.23	0.565969
3395	dm3.chr2R	4,840,704 – 4,840,800	- - CDS="CDS;ID=CDS_FBgn0011300:2_572;Name=babo-cds;Parent=FBtr0088658,FBtr0088659;parent_type=mRNA" - - - - -	4669	4,840,704 – 4,840,800	-	7	99	74.93	-1.84	0.53	0.937841
3396	dm3.chr2R	4,841,657 – 4,841,813	- - - intron="intron;ID=intron_FBgn0011300:2_FBgn0011300:3;Name=babo-in;Parent=FBtr0088658,FBtr0088659,FBtr0300599;parent_type=mRNA" - - - -	4670	4,841,657 – 4,841,813	-	6	156	82.77	-1.94	0.77	0.941450
3397	dm3.chr2R	4,919,946 – 4,920,024	- - - - - - - -	4671	4,919,946 – 4,920,024	+	11	96	70.65	-0.74	0.56	0.514303
3397	dm3.chr2R	4,919,946 – 4,920,024	- - - - - - - -	4672	4,919,946 – 4,920,024	-	11	96	70.65	-1.63	0.45	0.839142
3398	dm3.chr2R	4,935,597 – 4,935,670	- - - intron="intron;ID=intron_CG13743:8_CG13743:9;Name=CG13743-in;Parent=FBtr0088662;parent_type=mRNA" - - - -	4673	4,935,597 – 4,935,670	-	9	77	73.15	-1.00	0.52	0.610584
3399	dm3.chr2R	4,938,822 – 4,938,931	- - - intron="intron;ID=intron_CG13743:3_CG13743:4;Name=CG13743-in;Parent=FBtr0088662;parent_type=mRNA" - - - -	4674	4,938,822 – 4,938,931	+	8	110	71.55	-1.16	0.46	0.517597
3400	dm3.chr2R	4,946,428 – 4,946,533	- - - intron="intron;ID=intron_CG13743:2_CG13743:3;Name=CG13743-in;Parent=FBtr0088662;parent_type=mRNA" - - - -	4675	4,946,428 – 4,946,533	+	5	119	60.78	-0.85	0.44	0.556505
3401	dm3.chr2R	4,947,372 – 4,947,467	- - - - - - - -	4676	4,947,372 – 4,947,467	+	9	99	90.59	-2.22	0.67	0.606801
3402	dm3.chr2R	4,950,007 – 4,950,183	- - - - - - - -	4677	4,950,007 – 4,950,183	+	6	186	75.43	-1.44	0.64	0.850093
3403	dm3.chr2R	4,961,320 – 4,961,378	- - - intron="intron;ID=intron_FBgn0011746:1_FBgn0011746:3;Name=ana-in;Parent=FBtr0300501;parent_type=mRNA" - - - -	4678	4,961,320 – 4,961,378	-	11	68	81.24	-2.56	0.66	0.980269
3404	dm3.chr2R	4,965,896 – 4,966,013	- - - - - - - -	4679	4,965,896 – 4,966,013	+	5	117	82.64	-2.44	0.56	0.835379
3405	dm3.chr2R	4,975,384 – 4,975,439	- - - - - - - -	4680	4,975,384 – 4,975,439	+	7	66	73.71	-3.69	0.73	0.999715
3406	dm3.chr2R	4,982,877 – 4,982,992	FBnoncoding="snoRNA;ID=FBtr0113494;Name=snoRNA:Psi28S-2949-RA;Parent=FBgn0082981;Dbxref=FlyBase_Annotation_IDs:CR34525-RA,REFSEQ:NR_003786;score_text=Weakly" - - - - - - -	4681	4,982,877 – 4,982,992	+	12	119	68.13	-0.72	0.44	0.545622
3407	dm3.chr2R	4,983,187 – 4,983,287	FBnoncoding="snoRNA;ID=FBtr0091614;Name=snoRNA:Or-aca5-RA;Parent=FBgn0086672;Alias=snoRNA:227-RA;Dbxref=FlyBase_Annotation_IDs:CR33637-RA,REFSEQ:NR_002540;score_text=Weakly" - - - - - - -	4682	4,983,187 – 4,983,287	+	11	107	85.63	-1.88	0.78	0.921455
3408	dm3.chr2R	4,984,560 – 4,984,671	FBnoncoding="snoRNA;ID=FBtr0091613;Name=snoRNA:Or-CD2-RA;Parent=FBgn0086603;Alias=snoRNA:461-RA;Dbxref=FlyBase_Annotation_IDs:CR33636-RA,REFSEQ:NR_002541;score_text=Weakly" - - - - "Noncode_2.0=n3508_u3136_AJ544006_snoRNA_Drosophila\|1.6e-49" "unique_Noncode_2.0=u3136_snoRNA_Drosophila\|1.4e-49" -	4683	4,984,560 – 4,984,671	+	13	120	78.85	-2.62	0.49	0.982434
3409	dm3.chr2R	4,993,529 – 4,993,628	- - - - - - - -	4684	4,993,529 – 4,993,628	+	7	104	69.15	-2.98	0.37	0.993564
3410	dm3.chr2R	5,025,429 – 5,025,521	- - - - - - - -	4685	5,025,429 – 5,025,521	+	5	93	91.13	-1.67	0.84	0.657092
3411	dm3.chr2R	5,028,580 – 5,028,683	- - - intron="intron;ID=intron_FBgn0028955:3_FBgn0028955:4;Name=CG8788-in;Parent=FBtr0088581;parent_type=mRNA" - - - -	4686	5,028,580 – 5,028,682	-	7	112	65.99	-1.42	0.40	0.730407
3411	dm3.chr2R	5,028,580 – 5,028,683		4687	5,028,580 – 5,028,683	-	7	112	66.14	-1.48	0.40	0.774611
3412	dm3.chr2R	5,029,042 – 5,029,157	- - - - - - - -	4688	5,029,042 – 5,029,157	+	9	115	73.28	-0.87	0.53	0.513330
3413	dm3.chr2R	5,072,978 – 5,073,079	- - CDS="CDS;ID=CDS_CG8024:6_519;Name=ltd-cds;Parent=FBtr0089932;parent_type=mRNA" - - - - -	4689	5,072,978 – 5,073,079	+	9	113	64.79	-1.92	0.34	0.920320
3414	dm3.chr2R	5,087,535 – 5,087,643	- - - - - - - -	4690	5,087,535 – 5,087,643	-	11	117	66.91	-2.03	0.31	0.907536
3415	dm3.chr2R	5,100,175 – 5,100,265	- - - - - - - -	4691	5,100,175 – 5,100,265	-	11	91	83.74	-1.32	0.76	0.548600
3416	dm3.chr2R	5,104,699 – 5,104,763	- - - - - - - -	4692	5,104,699 – 5,104,763	+	6	73	50.26	-1.45	0.34	0.912899
3417	dm3.chr2R	5,106,216 – 5,106,327	- - - - - - - -	4693	5,106,216 – 5,106,327	+	4	120	68.83	-1.91	0.40	0.649465
3418	dm3.chr2R	5,116,850 – 5,117,002	- - - intron="intron;ID=intron_CG2040:6_CG2040:7;Name=hig-in;Parent=FBtr0088606,FBtr0088607;parent_type=mRNA" - - - -	4694	5,116,850 – 5,116,970	+	5	120	72.65	-1.47	0.55	0.795443
				4695	5,116,850 – 5,116,970	-	5	120	72.65	-2.36	0.68	0.996582
				4696	5,116,890 – 5,117,002	+	5	120	72.27	-2.82	0.61	0.998061
				4697	5,116,890 – 5,117,002	-	5	120	72.27	-3.76	0.56	0.999667
3419	dm3.chr2R	5,122,199 – 5,122,287	- - CDS="CDS;ID=CDS_CG2040:2_502;Name=hig-cds;Parent=FBtr0088606,FBtr0088607,FBtr0088608;parent_type=mRNA" - - - - -	4698	5,122,199 – 5,122,287	-	12	94	69.73	-1.27	0.49	0.909026
3420	dm3.chr2R	5,152,699 – 5,152,757	- - - - - - - -	4699	5,152,699 – 5,152,757	+	8	60	75.08	-1.17	0.55	0.533147
3420	dm3.chr2R	5,152,699 – 5,152,757	- - - - - - - -	4700	5,152,699 – 5,152,757	-	8	60	75.08	-0.87	0.65	0.591418
3421	dm3.chr2R	5,156,614 – 5,156,725	- - - - - - - -	4701	5,156,614 – 5,156,725	+	7	117	61.83	-1.49	0.48	0.984412
3422	dm3.chr2R	5,183,074 – 5,183,200	- - CDS="CDS;ID=CDS_FBgn0028408:2_555;Name=Drep-2-cds;Parent=FBtr0112930;parent_type=mRNA" intron="intron;ID=intron_FBgn0028408:1_FBgn0028408:3;Name=Drep-2-in;Parent=FBtr0088597,FBtr0304798;parent_type=mRNA" - - - -	4702	5,183,074 – 5,183,200	+	11	132	79.54	-1.39	0.55	0.540865
3422	dm3.chr2R	5,183,074 – 5,183,200		4703	5,183,074 – 5,183,200	-	11	132	79.54	-1.81	0.56	0.874771
3423	dm3.chr2R	5,185,497 – 5,185,606	- - - intron="intron;ID=intron_FBgn0028408:3_FBgn0028408:5;Name=Drep-2-in;Parent=FBtr0088597,FBtr0112930;parent_type=mRNA" - - - -	4704	5,185,497 – 5,185,606	-	6	112	74.42	-1.81	0.41	0.586777
3424	dm3.chr2R	5,187,372 – 5,187,478	- - - - - - - -	4705	5,187,372 – 5,187,478	+	5	125	76.14	-2.12	0.63	0.943813
3425	dm3.chr2R	5,193,973 – 5,194,093	- - - intron="intron;ID=intron_CG2078:1_CG2078:2;Name=Myd88-in;Parent=FBtr0088598;parent_type=mRNA" - - - -	4706	5,193,973 – 5,194,093	-	5	120	85.83	-1.74	0.87	0.924111
3426	dm3.chr2R	5,196,017 – 5,196,110	- - - - - - - -	4707	5,196,017 – 5,196,110	+	5	96	88.07	-2.33	0.76	0.912161
3427	dm3.chr2R	5,200,519 – 5,200,625	FBnoncoding="pre_miRNA;ID=FBtr0304277;Name=mir-987-RM;Parent=FBgn0262220;Alias=CR42927-RM;Dbxref=FlyBase_Annotation_IDs:CR42927-RM,miRBase:MI0005846" - - - - - - "mirBase_v16=dsi-mir-987-2\|6.9e-49"	4708	5,200,519 – 5,200,625	+	12	119	88.07	-2.39	0.89	0.989000
3427	dm3.chr2R	5,200,519 – 5,200,625		4709	5,200,519 – 5,200,625	-	12	119	88.07	-3.12	0.99	0.998300
3428	dm3.chr2R	5,202,691 – 5,202,791	- - - - - - - -	4710	5,202,691 – 5,202,791	+	7	108	72.58	-1.39	0.45	0.546029
3429	dm3.chr2R	5,207,643 – 5,207,753	- - - - - - - -	4711	5,207,643 – 5,207,753	+	7	118	87.78	-1.84	0.73	0.616363
3430	dm3.chr2R	5,214,040 – 5,214,137	- - - intron="intron;ID=intron_CG13739:2_CG13739:3;Name=CG13739-in;Parent=FBtr0088558;parent_type=mRNA" - - - -	4712	5,214,040 – 5,214,137	+	5	97	90.71	-1.54	0.87	0.722884
3431	dm3.chr2R	5,216,054 – 5,216,146	- - - intron="intron;ID=intron_CG13739:2_CG13739:3;Name=CG13739-in;Parent=FBtr0088558;parent_type=mRNA" - - - -	4713	5,216,054 – 5,216,146	-	6	120	63.45	-2.95	0.56	0.999685
3432	dm3.chr2R	5,216,740 – 5,216,860	- - - intron="intron;ID=intron_CG13739:2_CG13739:3;Name=CG13739-in;Parent=FBtr0088558;parent_type=mRNA" - - - -	4714	5,216,740 – 5,216,860	-	6	120	66.67	-2.40	0.44	0.994852
3433	dm3.chr2R	5,227,063 – 5,227,127	- - - intron="intron;ID=intron_CG13739:2_CG13739:3;Name=CG13739-in;Parent=FBtr0088558;parent_type=mRNA" - - - -	4715	5,227,063 – 5,227,127	+	6	64	77.19	-1.54	0.57	0.753803
3434	dm3.chr2R	5,228,044 – 5,228,134	- - - intron="intron;ID=intron_CG13739:2_CG13739:3;Name=CG13739-in;Parent=FBtr0088558;parent_type=mRNA" - - - -	4716	5,228,044 – 5,228,134	-	5	91	95.24	-1.79	0.94	0.906243
3435	dm3.chr2R	5,236,479 – 5,236,614	- - - - - - - -	4717	5,236,479 – 5,236,585	+	8	116	72.50	-1.99	0.36	0.613531
3435	dm3.chr2R	5,236,479 – 5,236,614	- - - - - - - -	4718	5,236,516 – 5,236,614	+	8	108	67.42	-1.97	0.43	0.967827
3436	dm3.chr2R	5,255,762 – 5,255,855	- - - - - - - -	4719	5,255,762 – 5,255,855	+	6	110	64.77	-1.87	0.44	0.970017
3436	dm3.chr2R	5,255,762 – 5,255,855	- - - - - - - -	4720	5,255,762 – 5,255,855	-	6	110	64.77	-1.82	0.46	0.974983
3437	dm3.chr2R	5,257,321 – 5,257,422	- - - - - - - -	4721	5,257,321 – 5,257,422	-	12	111	78.10	-2.12	0.55	0.961182
3438	dm3.chr2R	5,263,519 – 5,263,632	- - - - - - - -	4722	5,263,519 – 5,263,632	+	4	115	65.35	-1.68	0.44	0.843793
3439	dm3.chr2R	5,271,486 – 5,271,577	- - - - - - - -	4723	5,271,486 – 5,271,577	+	6	105	73.80	-1.43	0.69	0.926314
3440	dm3.chr2R	5,286,139 – 5,286,243	- - - - - - - -	4724	5,286,139 – 5,286,243	+	12	108	74.10	-2.34	0.40	0.968818
3440	dm3.chr2R	5,286,139 – 5,286,243	- - - - - - - -	4725	5,286,139 – 5,286,243	-	12	108	74.10	-2.63	0.48	0.996879
3441	dm3.chr2R	5,296,661 – 5,296,782	- - - - - - - -	4726	5,296,661 – 5,296,752	-	9	106	59.48	-0.92	0.44	0.925755
3441	dm3.chr2R	5,296,661 – 5,296,782	- - - - - - - -	4727	5,296,691 – 5,296,782	-	11	123	62.00	-0.58	0.45	0.542225
3442	dm3.chr2R	5,299,879 – 5,299,981	- - - intron="intron;ID=intron_FBgn0016078:10_FBgn0016078:9;Name=wun-in;Parent=FBtr0088552,FBtr0306111;parent_type=mRNA" - - - -	4728	5,299,879 – 5,299,980	-	5	111	75.21	-3.11	0.51	0.993834
3442	dm3.chr2R	5,299,879 – 5,299,981		4729	5,299,879 – 5,299,981	-	5	111	75.84	-2.95	0.52	0.989789
3443	dm3.chr2R	5,300,094 – 5,300,186	- - - intron="intron;ID=intron_FBgn0016078:10_FBgn0016078:9;Name=wun-in;Parent=FBtr0088552,FBtr0306111;parent_type=mRNA" - - - -	4730	5,300,094 – 5,300,186	-	5	99	74.15	-1.01	0.70	0.622284
3444	dm3.chr2R	5,324,782 – 5,324,879	- - - intron="intron;ID=intron_CG11804:2_CG11804:3;Name=ced-6-in;Parent=FBtr0088548,FBtr0088549,FBtr0088550;parent_type=mRNA" - - - -	4731	5,324,782 – 5,324,879	-	5	120	69.26	-1.74	0.46	0.700775
3445	dm3.chr2R	5,332,609 – 5,332,707	- - - - - - - -	4732	5,332,609 – 5,332,707	+	4	107	70.42	-1.85	0.48	0.790090
3446	dm3.chr2R	5,333,711 – 5,333,803	- - - - - - - -	4733	5,333,711 – 5,333,803	+	6	111	83.93	-2.44	0.66	0.924536
3446	dm3.chr2R	5,333,711 – 5,333,803	- - - - - - - -	4734	5,333,711 – 5,333,803	-	6	111	83.93	-2.68	0.58	0.910309
3447	dm3.chr2R	5,388,514 – 5,388,568	- - - intron="intron;ID=intron_CG1916:1_CG1916:2;Name=Wnt2-in;Parent=FBtr0088512;parent_type=mRNA" - - - -	4735	5,388,514 – 5,388,568	+	7	54	80.74	-1.85	0.57	0.784470
3448	dm3.chr2R	5,405,618 – 5,405,719	- - - intron="intron;ID=intron_FBgn0259246:10_FBgn0259246:13;Name=brp-in;Parent=FBtr0305059;parent_type=mRNA" - - - -	4736	5,405,618 – 5,405,719	-	5	104	74.46	-1.81	0.73	0.979288
3449	dm3.chr2R	5,414,917 – 5,415,019	- - CDS="CDS;ID=CDS_FBgn0259246:14_555;Name=brp-cds;Parent=FBtr0299915,FBtr0299916;parent_type=mRNA" - - - - -	4737	5,414,917 – 5,415,019	-	14	114	79.70	-1.76	0.58	0.881780
3450	dm3.chr2R	5,430,892 – 5,430,995	- - - - - - - -	4738	5,430,892 – 5,430,995	+	5	120	72.91	-2.27	0.51	0.958262
3451	dm3.chr2R	5,434,521 – 5,434,633	- - - - - - - -	4739	5,434,521 – 5,434,633	-	7	124	67.08	-1.04	0.46	0.661316
3452	dm3.chr2R	5,441,245 – 5,441,352	FBnoncoding="pre_miRNA;ID=FBtr0304458;Name=mir-14-RM;Parent=FBgn0262447;Alias=CR43013-RM;Dbxref=FlyBase_Annotation_IDs:CR43013-RM,miRBase:MI0000136" - - - "Rfam_10.0=RF00752;mir-14;AAPU01010044.1/154796-154858\|1.7e-21" - - "mirBase_v16=dya-mir-14\|2.2e-30"	4740	5,441,245 – 5,441,352	+	12	120	90.32	-5.13	0.93	0.999049
3452	dm3.chr2R	5,441,245 – 5,441,352		4741	5,441,245 – 5,441,352	-	12	120	90.32	-3.20	0.96	0.997958
3453	dm3.chr2R	5,450,070 – 5,450,186	- - CDS="CDS;ID=CDS_CG1809:2_525;Name=CG1809-cds;Parent=FBtr0088520;parent_type=mRNA" - - - - -	4742	5,450,070 – 5,450,186	+	15	116	68.95	-1.23	0.36	0.699077
3454	dm3.chr2R	5,452,248 – 5,452,343	- - - - - - - -	4743	5,452,248 – 5,452,343	-	6	104	76.87	-1.00	0.74	0.638203
3455	dm3.chr2R	5,459,260 – 5,459,350	- - CDS="CDS;ID=CDS_FBgn0085436:8_631;Name=Not1-cds;Parent=FBtr0112673;parent_type=mRNA" - - - - -	4744	5,459,260 – 5,459,350	+	7	102	68.51	-2.10	0.38	0.921353
3456	dm3.chr2R	5,464,187 – 5,464,294	- - - intron="intron;ID=intron_FBgn0085436:14_FBgn0085436:13;Name=Not1-in;Parent=FBtr0112674;parent_type=mRNA" - - - -	4745	5,464,187 – 5,464,294	+	4	118	85.04	-2.17	0.69	0.767995
3457	dm3.chr2R	5,491,140 – 5,491,238	- - - - - - - -	4746	5,491,140 – 5,491,238	-	6	104	71.43	-1.97	0.44	0.918512
3458	dm3.chr2R	5,498,986 – 5,499,079	- - - - - - - -	4747	5,498,986 – 5,499,079	-	3	93	87.00	-1.39	0.91	0.787787
3459	dm3.chr2R	5,508,736 – 5,508,848	FBnoncoding="pre_miRNA;ID=FBtr0304171;Name=mir-307-as-RM;Parent=FBgn0262172;Alias=CR42879-RM;Dbxref=FlyBase_Annotation_IDs:CR42879-RM,miRBase:MI0011577" - - intron="intron;ID=intron_FBgn0033438:6_FBgn0033438:5;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" "Rfam_10.0=RF00844;mir-67;AAPU01010253.1/29382-29448\|3.0e-26" - - "mirBase_v16=dme-mir-307-as\|2.1e-58"	4748	5,508,736 – 5,508,848	+	14	131	83.39	-3.33	0.79	0.998843
3459	dm3.chr2R	5,508,736 – 5,508,848		4749	5,508,736 – 5,508,848	-	14	131	83.39	-5.30	0.86	0.999294
3460	dm3.chr2R	5,511,140 – 5,511,232	- - - intron="intron;ID=intron_FBgn0033438:6_FBgn0033438:5;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" - - - -	4750	5,511,140 – 5,511,232	+	5	92	91.28	-1.63	0.82	0.527027
3461	dm3.chr2R	5,514,453 – 5,514,609	- - - intron="intron;ID=intron_FBgn0033438:6_FBgn0033438:5;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" - - - -	4751	5,514,453 – 5,514,609	+	4	156	86.22	-2.12	0.71	0.792501
3462	dm3.chr2R	5,527,986 – 5,528,140	- - - intron="intron;ID=intron_FBgn0033438:6_FBgn0033438:5;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" - - - -	4752	5,527,986 – 5,528,079	-	7	113	69.89	-1.24	0.55	0.849737
				4753	5,528,041 – 5,528,135	-	7	104	67.00	-0.81	0.54	0.857607
				4754	5,528,046 – 5,528,140	-	7	103	67.47	-1.17	0.43	0.752416
3463	dm3.chr2R	5,529,257 – 5,529,349	- - - intron="intron;ID=intron_FBgn0033438:6_FBgn0033438:5;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" - - - -	4755	5,529,257 – 5,529,349	+	11	119	86.98	-4.42	0.87	0.999291
3463	dm3.chr2R	5,529,257 – 5,529,349		4756	5,529,257 – 5,529,349	-	11	119	86.98	-2.85	0.83	0.993831
3464	dm3.chr2R	5,530,255 – 5,530,347	- - - intron="intron;ID=intron_FBgn0033438:6_FBgn0033438:5;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" - - - -	4757	5,530,255 – 5,530,347	-	9	114	71.66	-1.81	0.51	0.949741
3465	dm3.chr2R	5,549,588 – 5,549,689	- - - intron="intron;ID=intron_FBgn0033438:6_FBgn0033438:5;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" - - - -	4758	5,549,588 – 5,549,689	-	5	121	82.19	-2.37	0.80	0.981114
3466	dm3.chr2R	5,550,882 – 5,550,987	- - - intron="intron;ID=intron_FBgn0033438:6_FBgn0033438:5;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" - - - -	4759	5,550,882 – 5,550,987	+	12	119	92.92	-2.39	0.72	0.736933
3467	dm3.chr2R	5,556,239 – 5,556,329	- - - intron="intron;ID=intron_FBgn0033438:8_FBgn0033438:7;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" - - - -	4760	5,556,239 – 5,556,329	+	7	111	64.76	-2.26	0.73	0.999177
3467	dm3.chr2R	5,556,239 – 5,556,329		4761	5,556,239 – 5,556,329	-	7	111	64.76	-0.87	0.56	0.824464
3468	dm3.chr2R	5,567,475 – 5,567,534	- - - intron="intron;ID=intron_FBgn0033438:8_FBgn0033438:7;Name=Mmp2-in;Parent=FBtr0088501;parent_type=mRNA" - - - -	4762	5,567,475 – 5,567,534	+	4	59	78.20	-1.71	0.74	0.884789
3469	dm3.chr2R	5,582,403 – 5,582,500	- - - - - - - -	4763	5,582,403 – 5,582,500	-	9	99	79.89	-1.44	0.60	0.613271
3470	dm3.chr2R	5,592,088 – 5,592,142	- - CDS="CDS;ID=CDS_FBgn0260474:2_631;Name=CG30002-cds;Parent=FBtr0302050;parent_type=mRNA" - - - - -	4764	5,592,088 – 5,592,142	-	8	54	66.01	-0.40	0.54	0.549835
3471	dm3.chr2R	5,595,010 – 5,595,067	- - - - - - - -	4765	5,595,010 – 5,595,067	+	3	57	90.59	-1.71	0.92	0.884116
3472	dm3.chr2R	5,612,540 – 5,612,591	- - - intron="intron;ID=intron_FBgn0259678:10_FBgn0259678:9;Name=CG42347-in;Parent=FBtr0299929,FBtr0299930;parent_type=mRNA" - - - -	4766	5,612,540 – 5,612,591	-	5	51	91.57	-0.60	1.01	0.613644
3473	dm3.chr2R	5,613,253 – 5,613,351	- - - intron="intron;ID=intron_FBgn0259678:10_FBgn0259678:9;Name=CG42347-in;Parent=FBtr0299929,FBtr0299930;parent_type=mRNA" - - - -	4767	5,613,253 – 5,613,351	+	9	109	78.08	-2.42	0.48	0.940364
3473	dm3.chr2R	5,613,253 – 5,613,351		4768	5,613,253 – 5,613,351	-	9	109	78.08	-2.33	0.53	0.960796
3474	dm3.chr2R	5,627,323 – 5,627,433	- - - intron="intron;ID=intron_FBgn0259678:10_FBgn0259678:9;Name=CG42347-in;Parent=FBtr0299929,FBtr0299930;parent_type=mRNA" - - - -	4769	5,627,323 – 5,627,433	-	3	110	88.31	-2.27	0.77	0.839841
3475	dm3.chr2R	5,637,788 – 5,637,892	- - - - - - - -	4770	5,637,788 – 5,637,892	-	11	111	69.31	-1.10	0.42	0.598440
3476	dm3.chr2R	5,641,446 – 5,641,555	- - - intron="intron;ID=intron_FBgn0005614:2_FBgn0005614:4;Name=trpl-in;Parent=FBtr0088471;parent_type=mRNA" - - - -	4771	5,641,446 – 5,641,555	-	8	114	83.27	-1.87	0.60	0.629810
3477	dm3.chr2R	5,643,039 – 5,643,131	- - - intron="intron;ID=intron_FBgn0005614:3_FBgn0005614:4;Name=trpl-in;Parent=FBtr0088473;parent_type=mRNA" - - - -	4772	5,643,039 – 5,643,131	-	8	97	76.95	-2.51	0.36	0.721394
3478	dm3.chr2R	5,643,526 – 5,643,617	- - CDS="CDS;ID=CDS_FBgn0005614:5_619;Name=trpl-cds;Parent=FBtr0301662;parent_type=mRNA" - - - - -	4773	5,643,526 – 5,643,617	+	10	114	71.84	-1.71	0.42	0.773656
3478	dm3.chr2R	5,643,526 – 5,643,617		4774	5,643,526 – 5,643,617	-	10	114	71.84	-1.68	0.40	0.664416
3479	dm3.chr2R	5,648,213 – 5,648,263	- - - intron="intron;ID=intron_FBgn0005614:6_FBgn0005614:7;Name=trpl-in;Parent=FBtr0088471,FBtr0088473,FBtr0301662;parent_type=mRNA" - - - -	4775	5,648,213 – 5,648,263	+	5	50	88.60	-1.58	0.87	0.816960
3480	dm3.chr2R	5,656,648 – 5,656,764	- - CDS="CDS;ID=CDS_CG1688:8_520;Name=CG1688-cds;Parent=FBtr0088495;parent_type=mRNA" - - - - -	4776	5,656,648 – 5,656,764	+	7	116	64.73	-1.14	0.39	0.688344
3480	dm3.chr2R	5,656,648 – 5,656,764		4777	5,656,648 – 5,656,764	-	7	116	64.73	-1.35	0.37	0.763620
3481	dm3.chr2R	5,677,040 – 5,677,132	- - - intron="intron;ID=intron_CG1688:2_CG1688:3;Name=CG1688-in;Parent=FBtr0088495;parent_type=mRNA" - - - -	4778	5,677,040 – 5,677,132	-	11	102	75.89	-1.20	0.79	0.947335
3482	dm3.chr2R	5,677,348 – 5,677,439	- - - intron="intron;ID=intron_CG1688:2_CG1688:3;Name=CG1688-in;Parent=FBtr0088495;parent_type=mRNA" - - - -	4779	5,677,348 – 5,677,439	+	8	102	86.02	-2.36	0.72	0.936435
3483	dm3.chr2R	5,682,345 – 5,682,401	- - - intron="intron;ID=intron_CG1688:1_CG1688:2;Name=CG1688-in;Parent=FBtr0088495;parent_type=mRNA" - - - -	4780	5,682,345 – 5,682,401	-	5	57	79.75	-1.55	0.71	0.769603
3484	dm3.chr2R	5,685,674 – 5,685,776	- - - - - - - -	4781	5,685,674 – 5,685,776	+	4	108	80.95	-2.46	0.69	0.962673
3485	dm3.chr2R	5,688,859 – 5,688,955	- - - - - - - -	4782	5,688,859 – 5,688,955	+	9	111	68.00	-1.07	0.45	0.553815
3486	dm3.chr2R	5,700,057 – 5,700,171	- - CDS="CDS;ID=CDS_CG1648:2_504;Name=CG1648-cds;Parent=FBtr0088493,FBtr0088494;parent_type=mRNA" - - - - -	4783	5,700,057 – 5,700,171	-	12	117	78.09	-1.52	0.45	0.551021
3487	dm3.chr2R	5,705,494 – 5,705,597	- - CDS="CDS;ID=CDS_FBgn0040093:2_504;Name=lectin-46Ca-cds;Parent=FBtr0088476;parent_type=mRNA" - - - - -	4784	5,705,494 – 5,705,597	-	11	115	67.20	-0.62	0.48	0.563527
3488	dm3.chr2R	5,715,311 – 5,715,409	- - - - - - - -	4785	5,715,311 – 5,715,409	+	4	114	63.17	-1.89	0.46	0.955661
3488	dm3.chr2R	5,715,311 – 5,715,409	- - - - - - - -	4786	5,715,311 – 5,715,409	-	4	114	63.17	-2.04	0.44	0.963071
3489	dm3.chr2R	5,743,985 – 5,744,083	- - - - - - - -	4787	5,743,985 – 5,744,083	-	9	116	74.78	-1.81	0.52	0.852365
3490	dm3.chr2R	5,753,029 – 5,753,087	- - - intron="intron;ID=intron_FBgn0011241:6_FBgn0011241:4;Name=cbx-in;Parent=FBtr0088452;parent_type=mRNA" - - - -	4788	5,753,029 – 5,753,087	-	3	58	95.40	-1.09	1.07	0.946387
3491	dm3.chr2R	5,769,015 – 5,769,110	- - - intron="intron;ID=intron_FBgn0033460:10_FBgn0033460:9;Name=sec24-in;Parent=FBtr0088451;parent_type=mRNA" - - - -	4789	5,769,015 – 5,769,110	-	7	120	69.44	-1.63	0.44	0.653204
3492	dm3.chr2R	5,788,864 – 5,788,952	- - - intron="intron;ID=intron_FBgn0033464:6_FBgn0033464:5;Name=CG1441-in;Parent=FBtr0088448;parent_type=mRNA" - - - -	4790	5,788,864 – 5,788,952	-	7	97	67.32	-1.43	0.44	0.718789
3493	dm3.chr2R	5,788,988 – 5,789,133	- - - intron="intron;ID=intron_FBgn0033464:6_FBgn0033464:5;Name=CG1441-in;Parent=FBtr0088448;parent_type=mRNA" - - - -	4791	5,788,988 – 5,789,101	+	5	113	92.36	-1.92	0.88	0.884220
				4792	5,788,988 – 5,789,101	-	5	113	92.36	-2.56	0.80	0.939156
				4793	5,789,028 – 5,789,133	+	5	105	96.75	-1.85	0.89	0.763395
3494	dm3.chr2R	5,791,880 – 5,791,930	- - - - - - - -	4794	5,791,880 – 5,791,930	+	5	50	93.80	-1.89	0.85	0.761882
3495	dm3.chr2R	5,794,000 – 5,794,097	- - - intron="intron;ID=intron_CG2346:1_CG2346:2;Name=Fmrf-in;Parent=FBtr0088383;parent_type=mRNA" - - - -	4795	5,794,000 – 5,794,097	-	4	112	79.33	-2.15	0.61	0.804477
3496	dm3.chr2R	5,811,270 – 5,811,390	- - - intron="intron;ID=intron_FBgn0011656:13_FBgn0011656:12;Name=Mef2-in;Parent=FBtr0088446,FBtr0088443,FBtr0088444,FBtr0088445;parent_type=mRNA" - - - -	4796	5,811,270 – 5,811,390	+	5	120	89.79	-2.19	0.69	0.589634
3497	dm3.chr2R	5,811,429 – 5,811,549	- - - intron="intron;ID=intron_FBgn0011656:13_FBgn0011656:12;Name=Mef2-in;Parent=FBtr0088446,FBtr0088443,FBtr0088444,FBtr0088445;parent_type=mRNA" - - - -	4797	5,811,429 – 5,811,549	+	5	120	93.49	-1.56	0.91	0.774683
3497	dm3.chr2R	5,811,429 – 5,811,549		4798	5,811,429 – 5,811,549	-	5	120	93.49	-2.47	0.90	0.975795
3498	dm3.chr2R	5,815,257 – 5,815,349	- - - intron="intron;ID=intron_FBgn0011656:13_FBgn0011656:12;Name=Mef2-in;Parent=FBtr0088446,FBtr0088443,FBtr0088444,FBtr0088445;parent_type=mRNA" - - - -	4799	5,815,257 – 5,815,349	+	7	118	75.19	-1.76	0.52	0.688029
3498	dm3.chr2R	5,815,257 – 5,815,349		4800	5,815,257 – 5,815,349	-	7	118	75.19	-2.44	0.51	0.958647
3499	dm3.chr2R	5,822,859 – 5,822,913	- - - - - - - -	4801	5,822,859 – 5,822,913	+	3	54	97.53	-1.00	0.98	0.573236
3500	dm3.chr2R	5,825,445 – 5,825,536	- - - - - - - -	4802	5,825,445 – 5,825,536	-	7	93	64.56	-1.57	0.30	0.573932
3501	dm3.chr2R	5,833,001 – 5,833,091	- - - intron="intron;ID=intron_FBgn0011656:15_FBgn0011656:14;Name=Mef2-in;Parent=FBtr0088447;parent_type=mRNA" - - - -	4803	5,833,001 – 5,833,091	-	3	91	67.65	-0.84	0.77	0.729184
3502	dm3.chr2R	5,835,432 – 5,835,582	- - - intron="intron;ID=intron_FBgn0011656:15_FBgn0011656:14;Name=Mef2-in;Parent=FBtr0088447;parent_type=mRNA" - - - -	4804	5,835,432 – 5,835,582	-	7	157	60.38	-1.77	0.29	0.880148
3503	dm3.chr2R	5,861,623 – 5,861,756	- - - - - - - -	4805	5,861,623 – 5,861,756	+	11	148	77.09	-1.31	0.51	0.510488
3504	dm3.chr2R	5,865,012 – 5,865,111	- - - - - - - -	4806	5,865,012 – 5,865,111	+	4	101	80.78	-2.12	0.67	0.890244
3504	dm3.chr2R	5,865,012 – 5,865,111	- - - - - - - -	4807	5,865,012 – 5,865,111	-	4	101	80.78	-2.66	0.75	0.989975
3505	dm3.chr2R	5,872,196 – 5,872,346	- - - - - - - -	4808	5,872,196 – 5,872,303	+	5	111	81.77	-1.88	0.60	0.576526
3505	dm3.chr2R	5,872,196 – 5,872,346	- - - - - - - -	4809	5,872,235 – 5,872,346	+	6	115	70.08	-1.75	0.45	0.911574
3506	dm3.chr2R	5,873,181 – 5,873,315	- - - - - - - -	4810	5,873,181 – 5,873,276	-	5	99	91.93	-2.80	0.78	0.962911
3506	dm3.chr2R	5,873,181 – 5,873,315	- - - - - - - -	4811	5,873,207 – 5,873,315	+	5	110	72.40	-1.72	0.49	0.821932
3507	dm3.chr2R	5,878,133 – 5,878,245	- - CDS="CDS;ID=CDS_FBgn0024923:6_499;Name=TER94-cds;Parent=FBtr0088391;parent_type=mRNA" - - - - -	4812	5,878,133 – 5,878,245	+	14	120	69.82	-1.13	0.52	0.932262
3508	dm3.chr2R	5,888,589 – 5,888,671	- - - intron="intron;ID=intron_FBgn0022382:10_FBgn0022382:9;Name=Pka-R2-in;Parent=FBtr0088437,FBtr0088438,FBtr0088439,FBtr0112901,FBtr0112902;parent_type=mRNA" - - - -	4813	5,888,589 – 5,888,671	+	8	86	83.10	-1.89	0.60	0.737467
3509	dm3.chr2R	5,892,246 – 5,892,341	- - - intron="intron;ID=intron_FBgn0022382:10_FBgn0022382:9;Name=Pka-R2-in;Parent=FBtr0088437,FBtr0088438,FBtr0088439,FBtr0112901,FBtr0112902;parent_type=mRNA" - - - -	4814	5,892,246 – 5,892,341	+	7	113	61.87	-2.81	0.34	0.995839
3510	dm3.chr2R	5,896,232 – 5,896,293	- - - intron="intron;ID=intron_FBgn0022382:13_FBgn0022382:10;Name=Pka-R2-in;Parent=FBtr0112902;parent_type=mRNA" - - - -	4815	5,896,232 – 5,896,293	+	6	61	79.23	-2.59	0.63	0.990274
3510	dm3.chr2R	5,896,232 – 5,896,293		4816	5,896,232 – 5,896,293	-	6	61	79.23	-1.62	0.70	0.895728
3511	dm3.chr2R	5,903,270 – 5,903,364	- - - intron="intron;ID=intron_FBgn0022382:13_FBgn0022382:10;Name=Pka-R2-in;Parent=FBtr0112902;parent_type=mRNA" - - - -	4817	5,903,270 – 5,903,364	+	7	111	66.26	-1.08	0.42	0.528755
3512	dm3.chr2R	5,906,235 – 5,906,338	- - - intron="intron;ID=intron_FBgn0022382:13_FBgn0022382:10;Name=Pka-R2-in;Parent=FBtr0112902;parent_type=mRNA" - - - -	4818	5,906,235 – 5,906,338	-	5	105	67.76	-1.46	0.39	0.522711
3513	dm3.chr2R	5,914,304 – 5,914,364	- - - - - - - -	4819	5,914,304 – 5,914,364	+	6	60	72.11	-1.69	0.43	0.811907
3514	dm3.chr2R	5,922,381 – 5,922,479	- - - - - - - -	4820	5,922,381 – 5,922,479	-	3	101	50.52	-0.96	0.42	0.569401
3515	dm3.chr2R	5,923,137 – 5,923,244	- - - - - - - -	4821	5,923,137 – 5,923,239	-	5	103	84.44	-2.31	0.74	0.947596
3515	dm3.chr2R	5,923,137 – 5,923,244	- - - - - - - -	4822	5,923,137 – 5,923,244	-	5	108	84.93	-1.84	0.71	0.669857
3516	dm3.chr2R	5,927,489 – 5,927,622	- - - intron="intron;ID=intron_CG18445:1_CG18445:2;Name=oys-in;Parent=FBtr0088434;parent_type=mRNA" - - - -	4823	5,927,489 – 5,927,622	-	5	133	90.38	-2.81	0.82	0.983044
3517	dm3.chr2R	5,950,380 – 5,950,476	- - CDS="CDS;ID=CDS_FBgn0033478:13_636;Name=magu-cds;Parent=FBtr0088399;parent_type=mRNA" - - - - -	4824	5,950,380 – 5,950,476	+	13	109	69.23	-0.97	0.50	0.822691
3518	dm3.chr2R	5,950,777 – 5,950,828	- - - - - - - -	4825	5,950,777 – 5,950,828	+	5	51	90.39	-2.60	0.64	0.740345
3519	dm3.chr2R	5,957,529 – 5,957,633	- - - intron="intron;ID=intron_FBgn0033481:2_FBgn0033481:3;Name=CG12920-in;Parent=FBtr0088404;parent_type=mRNA" - - - -	4826	5,957,529 – 5,957,633	+	12	111	61.14	-0.70	0.39	0.717117
3520	dm3.chr2R	5,960,646 – 5,960,740	- - - - - - - -	4827	5,960,646 – 5,960,740	-	11	102	67.23	-1.14	0.36	0.529303
3521	dm3.chr2R	5,967,269 – 5,967,359	- - - intron="intron;ID=intron_FBgn0033483:1_FBgn0033483:2;Name=egr-in;Parent=FBtr0088405,FBtr0088406;parent_type=mRNA" - - - -	4828	5,967,269 – 5,967,359	-	3	105	65.00	-2.25	0.41	0.832535
3522	dm3.chr2R	5,978,374 – 5,978,461	- - - intron="intron;ID=intron_FBgn0033484:5_FBgn0033484:6;Name=CG2269-in;Parent=FBtr0088409,FBtr0305653;parent_type=mRNA" - - - -	4829	5,978,374 – 5,978,461	-	6	100	60.61	-1.15	0.40	0.810353
3523	dm3.chr2R	5,988,388 – 5,988,478	- - - intron="intron;ID=intron_CG17870:1_CG17870:2;Name=14-3-3zeta-in;Parent=FBtr0088412;parent_type=mRNA" - - - -	4830	5,988,388 – 5,988,478	+	5	90	94.67	-4.05	0.91	0.998408
3523	dm3.chr2R	5,988,388 – 5,988,478		4831	5,988,388 – 5,988,478	-	5	90	94.67	-3.01	0.87	0.988258
3524	dm3.chr2R	5,989,365 – 5,989,532	- - - intron="intron;ID=intron_CG17870:29_CG17870:2;Name=14-3-3zeta-in;Parent=FBtr0088417;parent_type=mRNA" - - - -	4832	5,989,365 – 5,989,469	+	8	113	73.38	-3.09	0.28	0.932133
				4833	5,989,365 – 5,989,469	-	8	113	73.38	-2.46	0.40	0.943788
				4834	5,989,405 – 5,989,504	+	7	112	70.28	-1.97	0.37	0.668978
				4835	5,989,405 – 5,989,504	-	7	112	70.28	-2.14	0.56	0.989713
				4836	5,989,432 – 5,989,532	+	7	113	66.49	-1.54	0.39	0.653182
3525	dm3.chr2R	5,996,430 – 5,996,524	- - - - - - - -	4837	5,996,430 – 5,996,524	+	7	100	63.17	-0.82	0.47	0.779333
3526	dm3.chr2R	6,022,934 – 6,023,034	- - - - - - - -	4838	6,022,934 – 6,023,034	+	12	116	70.00	-0.39	0.59	0.554681
3527	dm3.chr2R	6,041,942 – 6,042,122	- - CDS="CDS;ID=CDS_FBgn0033494:19_592;Name=KCNQ-cds;Parent=FBtr0299832;parent_type=mRNA" - - - - -	4839	6,041,942 – 6,042,122	-	14	186	80.76	-1.97	0.45	0.676678
3528	dm3.chr2R	6,053,581 – 6,053,674	- - - - - - - -	4840	6,053,581 – 6,053,674	+	5	112	76.73	-2.13	0.55	0.833325
3528	dm3.chr2R	6,053,581 – 6,053,674	- - - - - - - -	4841	6,053,581 – 6,053,674	-	5	112	76.73	-1.85	0.67	0.896664
3529	dm3.chr2R	6,058,681 – 6,058,798	- - - - - - - -	4842	6,058,681 – 6,058,798	+	6	130	69.93	-2.13	0.48	0.963440
3530	dm3.chr2R	6,071,519 – 6,071,584	- - - - - - - -	4843	6,071,519 – 6,071,584	+	5	65	63.85	-0.54	0.50	0.580739
3530	dm3.chr2R	6,071,519 – 6,071,584	- - - - - - - -	4844	6,071,519 – 6,071,584	-	5	65	63.85	-0.99	0.40	0.518681
3531	dm3.chr2R	6,080,022 – 6,080,118	- - - - - - - -	4845	6,080,022 – 6,080,118	+	6	109	84.19	-1.77	0.71	0.714698
3532	dm3.chr2R	6,083,483 – 6,083,573	- - - - - - - -	4846	6,083,483 – 6,083,573	-	6	98	75.76	-1.66	0.51	0.671616
3533	dm3.chr2R	6,086,141 – 6,086,246	- - - intron="intron;ID=intron_FBgn0085250:3_FBgn0085250:2;Name=CG34221-in;Parent=FBtr0299834;parent_type=mRNA" - - - -	4847	6,086,141 – 6,086,246	+	7	112	66.77	-1.19	0.39	0.592490
3534	dm3.chr2R	6,099,987 – 6,100,080	- - - - - - - -	4848	6,099,987 – 6,100,080	+	8	115	83.61	-2.92	0.52	0.933210
3535	dm3.chr2R	6,104,826 – 6,104,960	- - - - - - - -	4849	6,104,826 – 6,104,926	+	5	100	97.56	-1.92	0.87	0.698923
				4850	6,104,826 – 6,104,926	-	5	100	97.56	-2.52	0.83	0.878034
				4851	6,104,866 – 6,104,960	-	9	97	76.46	-1.22	0.55	0.538629
3536	dm3.chr2R	6,109,050 – 6,109,104	- - - - - - - -	4852	6,109,050 – 6,109,104	+	10	69	78.35	-1.31	0.77	0.831386
3537	dm3.chr2R	6,129,829 – 6,129,926	- - - intron="intron;ID=intron_CG3454:2_CG3454:3;Name=Hdc-in;Parent=FBtr0088333;parent_type=mRNA" - - - -	4853	6,129,829 – 6,129,926	+	6	98	62.72	-0.50	0.53	0.764126
3538	dm3.chr2R	6,139,289 – 6,139,352	- - - intron="intron;ID=intron_FBgn0003660:5_FBgn0003660:4;Name=Syb-in;Parent=FBtr0088363,FBtr0273274;parent_type=mRNA" - - - -	4854	6,139,289 – 6,139,352	-	6	63	65.11	-1.58	0.37	0.880159
3539	dm3.chr2R	6,145,914 – 6,146,002	- - - intron="intron;ID=intron_FBgn0033501:1_FBgn0033501:2;Name=CG12911-in;Parent=FBtr0088336,FBtr0289962;parent_type=mRNA" - - - -	4855	6,145,914 – 6,146,002	+	8	92	70.56	-3.14	0.19	0.797661
3540	dm3.chr2R	6,152,348 – 6,152,432	- - - - - - - -	4856	6,152,348 – 6,152,432	+	4	94	71.13	-1.84	0.45	0.593228
3540	dm3.chr2R	6,152,348 – 6,152,432	- - - - - - - -	4857	6,152,348 – 6,152,432	-	4	94	71.13	-1.87	0.43	0.530212
3541	dm3.chr2R	6,157,252 – 6,157,370	- - - intron="intron;ID=intron_FBgn0033504:3_FBgn0033504:20;Name=CAP-in;Parent=FBtr0088338;parent_type=mRNA" - - - -	4858	6,157,252 – 6,157,370	+	5	120	90.07	-1.85	0.79	0.661903
3542	dm3.chr2R	6,162,919 – 6,162,999	- - - intron="intron;ID=intron_FBgn0033504:4_FBgn0033504:14;Name=CAP-in;Parent=FBtr0299825;parent_type=mRNA" - - - -	4859	6,162,919 – 6,162,999	-	12	95	71.93	-0.96	0.54	0.642298
3543	dm3.chr2R	6,164,148 – 6,164,238	- - - intron="intron;ID=intron_FBgn0033504:4_FBgn0033504:14;Name=CAP-in;Parent=FBtr0299825;parent_type=mRNA" - - - -	4860	6,164,148 – 6,164,238	+	5	101	90.40	-2.15	0.74	0.721306
3543	dm3.chr2R	6,164,148 – 6,164,238		4861	6,164,148 – 6,164,238	-	5	101	90.40	-2.04	0.74	0.632742
3544	dm3.chr2R	6,178,732 – 6,178,824	- - - intron="intron;ID=intron_FBgn0033504:13_FBgn0033504:20;Name=CAP-in;Parent=FBtr0088344,FBtr0301965;parent_type=mRNA" - - - -	4862	6,178,732 – 6,178,824	+	10	105	78.60	-0.93	0.69	0.631661
3545	dm3.chr2R	6,190,970 – 6,191,094	- - - intron="intron;ID=intron_FBgn0033504:28_FBgn0033504:31;Name=CAP-in;Parent=FBtr0088346;parent_type=mRNA" - - - -	4863	6,190,970 – 6,191,086	-	5	119	90.53	-2.80	0.79	0.976303
3545	dm3.chr2R	6,190,970 – 6,191,094		4864	6,190,980 – 6,191,094	-	5	117	91.58	-2.29	0.80	0.891870
3546	dm3.chr2R	6,227,466 – 6,227,533	- - - intron="intron;ID=intron_FBgn0261698:29_FBgn0261698:28;Name=CG42732-in;Parent=FBtr0303082,FBtr0303081,FBtr0303080,FBtr0303083,FBtr0305946;parent_type=mRNA" - - - -	4865	6,227,466 – 6,227,533	-	7	74	63.27	-1.87	0.31	0.874413
3547	dm3.chr2R	6,243,701 – 6,243,791	- - - - - - - -	4866	6,243,701 – 6,243,791	+	5	94	71.87	-1.06	0.72	0.801057
3548	dm3.chr2R	6,259,115 – 6,259,216	- - - - - - - -	4867	6,259,115 – 6,259,216	+	8	117	65.73	-1.15	0.43	0.792996
3549	dm3.chr2R	6,260,523 – 6,260,648	- - - - - - - -	4868	6,260,523 – 6,260,648	+	8	132	71.25	-2.68	0.46	0.995327
3550	dm3.chr2R	6,267,836 – 6,267,926	- - - - - - - -	4869	6,267,836 – 6,267,926	+	8	116	63.37	-1.48	0.34	0.500000
3551	dm3.chr2R	6,272,799 – 6,272,907	- - - - - - - -	4870	6,272,799 – 6,272,907	-	8	116	69.87	-1.58	0.38	0.528036
3552	dm3.chr2R	6,283,384 – 6,283,492	- - - - - - - -	4871	6,283,384 – 6,283,479	-	12	117	67.22	-1.34	0.53	0.959127
				4872	6,283,390 – 6,283,492	+	11	112	65.31	-1.33	0.37	0.846776
				4873	6,283,390 – 6,283,492	-	11	112	65.31	-0.69	0.47	0.789520
3553	dm3.chr2R	6,288,831 – 6,288,926	- - - - - - - -	4874	6,288,831 – 6,288,926	+	5	104	71.75	-2.20	0.36	0.639473
3554	dm3.chr2R	6,339,652 – 6,339,747	- - - - - - - -	4875	6,339,652 – 6,339,747	+	13	98	65.52	-0.75	0.51	0.900992
3555	dm3.chr2R	6,340,633 – 6,340,730	- - - intron="intron;ID=intron_FBgn0033524:12_FBgn0033524:10;Name=Cyp49a1-in;Parent=FBtr0088311,FBtr0088313,FBtr0304592;parent_type=mRNA" - - - -	4876	6,340,633 – 6,340,730	+	9	115	56.96	-1.33	0.29	0.764260
3556	dm3.chr2R	6,340,960 – 6,341,068	- - - intron="intron;ID=intron_FBgn0033524:12_FBgn0033524:10;Name=Cyp49a1-in;Parent=FBtr0088311,FBtr0088313,FBtr0304592;parent_type=mRNA" - - - -	4877	6,340,960 – 6,341,068	+	5	112	68.20	-1.55	0.51	0.852257
3557	dm3.chr2R	6,364,646 – 6,364,826	- - - - - - - -	4878	6,364,646 – 6,364,752	+	4	111	63.09	-0.90	0.49	0.547431
				4879	6,364,646 – 6,364,752	-	4	111	63.09	-0.84	0.51	0.577238
				4880	6,364,682 – 6,364,788	-	6	117	64.87	-1.01	0.45	0.621474
				4881	6,364,721 – 6,364,826	-	5	115	78.75	-1.23	0.72	0.562340
3558	dm3.chr2R	6,368,838 – 6,368,931	- - - - - - - -	4882	6,368,838 – 6,368,931	-	13	108	67.23	-0.70	0.45	0.530281
3559	dm3.chr2R	6,371,322 – 6,371,438	- - CDS="CDS;ID=CDS_FBgn0005630:1_661;Name=lola-cds;Parent=FBtr0089347,FBtr0089357;parent_type=mRNA" - - - - -	4883	6,371,322 – 6,371,438	-	6	116	87.64	-1.67	0.85	0.863689
3560	dm3.chr2R	6,379,516 – 6,379,607	- - CDS="CDS;ID=CDS_FBgn0005630:7_661;Name=lola-cds;Parent=FBtr0089361;parent_type=mRNA" intron="intron;ID=intron_FBgn0005630:28_FBgn0005630:6;Name=lola-in;Parent=FBtr0089354;parent_type=mRNA" - - - -	4884	6,379,516 – 6,379,607	-	7	104	69.79	-1.54	0.50	0.935757
3561	dm3.chr2R	6,403,047 – 6,403,165	- - CDS="CDS;ID=CDS_FBgn0005630:16_661;Name=lola-cds;Parent=FBtr0089348;parent_type=mRNA" intron="intron;ID=intron_FBgn0005630:28_FBgn0005630:15;Name=lola-in;Parent=FBtr0089359,FBtr0089351;parent_type=mRNA" - - - -	4885	6,403,047 – 6,403,165	-	13	120	93.32	-1.52	0.85	0.606399
3562	dm3.chr2R	6,410,359 – 6,410,465	- - CDS="CDS;ID=CDS_FBgn0005630:21_662;Name=lola-cds;Parent=FBtr0100286;parent_type=mRNA" intron="intron;ID=intron_FBgn0005630:28_FBgn0005630:20;Name=lola-in;Parent=FBtr0089349,FBtr0089342;parent_type=mRNA" - - - -	4886	6,410,359 – 6,410,465	+	6	112	88.01	-1.85	0.76	0.707471
3563	dm3.chr2R	6,417,245 – 6,417,344	- - - intron="intron;ID=intron_FBgn0005630:28_FBgn0005630:26;Name=lola-in;Parent=FBtr0089356;parent_type=mRNA" - - - -	4887	6,417,245 – 6,417,344	-	12	111	73.65	-3.38	0.43	0.999027
3564	dm3.chr2R	6,424,252 – 6,424,359	- - - - "Rfam_10.0=RF01261;snR82;AAPP01018805.1/121345-121519\|4.1e-19" - - -	4888	6,424,252 – 6,424,350	-	12	120	68.16	-0.70	0.86	0.961557
3564	dm3.chr2R	6,424,252 – 6,424,359		4889	6,424,259 – 6,424,359	-	12	117	71.22	-0.45	0.77	0.831786
3565	dm3.chr2R	6,424,470 – 6,424,550	- - - - "Rfam_10.0=RF01261;snR82;AAPP01018805.1/121161-121308\|6.7e-14" - - -	4890	6,424,470 – 6,424,550	+	11	89	71.50	-0.50	0.78	0.859081
3565	dm3.chr2R	6,424,470 – 6,424,550		4891	6,424,470 – 6,424,550	-	11	89	71.50	-1.78	0.90	0.995058
3566	dm3.chr2R	6,425,216 – 6,425,266	- - - - - - - -	4892	6,425,216 – 6,425,266	+	6	62	69.57	-1.58	0.57	0.924768
3567	dm3.chr2R	6,429,039 – 6,429,173	- - - - - - - -	4893	6,429,039 – 6,429,173	-	8	141	74.48	-1.50	0.51	0.669218
3568	dm3.chr2R	6,434,527 – 6,434,629	- - - - - - - -	4894	6,434,527 – 6,434,629	+	5	103	96.69	-2.13	0.95	0.958682
3569	dm3.chr2R	6,435,114 – 6,435,187	- - - - - - - -	4895	6,435,114 – 6,435,187	+	5	73	91.51	-1.75	0.89	0.850829
3570	dm3.chr2R	6,458,149 – 6,458,199	- - - intron="intron;ID=intron_FBgn0004399:9_FBgn0004399:12;Name=psq-in;Parent=FBtr0088280;parent_type=mRNA" - - - -	4896	6,458,149 – 6,458,199	+	3	50	61.33	-0.88	0.56	0.569534
3571	dm3.chr2R	6,462,662 – 6,462,821	- - - intron="intron;ID=intron_FBgn0004399:9_FBgn0004399:12;Name=psq-in;Parent=FBtr0088280;parent_type=mRNA" - - - -	4897	6,462,662 – 6,462,754	+	7	95	85.44	-1.56	0.77	0.652402
				4898	6,462,722 – 6,462,821	+	7	113	63.32	-1.94	0.55	0.997557
				4899	6,462,722 – 6,462,821	-	7	113	63.32	-1.56	0.31	0.515571
3572	dm3.chr2R	6,468,760 – 6,468,829	- - - intron="intron;ID=intron_FBgn0004399:9_FBgn0004399:12;Name=psq-in;Parent=FBtr0088280;parent_type=mRNA" - - - -	4900	6,468,760 – 6,468,829	-	4	69	96.61	-2.41	0.99	0.989152
3573	dm3.chr2R	6,472,545 – 6,472,608	- - - intron="intron;ID=intron_FBgn0004399:11_FBgn0004399:13;Name=psq-in;Parent=FBtr0100606;parent_type=mRNA" - - - -	4901	6,472,545 – 6,472,608	+	7	72	62.20	-2.03	0.31	0.929307
3574	dm3.chr2R	6,483,767 – 6,483,889	- - - intron="intron;ID=intron_FBgn0004399:11_FBgn0004399:13;Name=psq-in;Parent=FBtr0100606;parent_type=mRNA" - - - -	4902	6,483,767 – 6,483,858	+	6	96	79.45	-1.56	0.68	0.829814
				4903	6,483,767 – 6,483,858	-	6	96	79.45	-1.61	0.65	0.802487
				4904	6,483,795 – 6,483,889	+	6	94	82.41	-1.72	0.74	0.888022
				4905	6,483,795 – 6,483,889	-	6	94	82.41	-2.17	0.72	0.965250
3575	dm3.chr2R	6,487,477 – 6,487,542	- - - intron="intron;ID=intron_FBgn0004399:11_FBgn0004399:13;Name=psq-in;Parent=FBtr0100606;parent_type=mRNA" - - - -	4906	6,487,477 – 6,487,542	+	6	72	74.36	-1.72	0.51	0.776763
3576	dm3.chr2R	6,489,437 – 6,489,563	- - - intron="intron;ID=intron_FBgn0004399:11_FBgn0004399:13;Name=psq-in;Parent=FBtr0100606;parent_type=mRNA" - - - -	4907	6,489,437 – 6,489,563	-	5	126	71.19	-1.11	0.66	0.869944
3577	dm3.chr2R	6,497,693 – 6,497,802	- - - intron="intron;ID=intron_FBgn0004399:11_FBgn0004399:13;Name=psq-in;Parent=FBtr0100606;parent_type=mRNA" - - - -	4908	6,497,693 – 6,497,802	-	5	120	83.68	-2.29	0.60	0.783289
3578	dm3.chr2R	6,508,208 – 6,508,311	- - - intron="intron;ID=intron_FBgn0033538:2_FBgn0033538:5;Name=CG11883-in;Parent=FBtr0088284,FBtr0088283;parent_type=mRNA" - - - -	4909	6,508,208 – 6,508,311	+	5	112	95.31	-1.53	1.00	0.937108
3579	dm3.chr2R	6,517,465 – 6,517,588	- - - intron="intron;ID=intron_FBgn0033538:3_FBgn0033538:4;Name=CG11883-in;Parent=FBtr0113063;parent_type=mRNA" - - - -	4910	6,517,465 – 6,517,588	+	3	149	56.85	-1.50	0.50	0.940439
3579	dm3.chr2R	6,517,465 – 6,517,588		4911	6,517,465 – 6,517,588	-	3	149	56.85	-1.33	0.50	0.892627
3580	dm3.chr2R	6,538,973 – 6,539,076	- - - - - - - -	4912	6,538,973 – 6,539,076	+	6	111	75.21	-1.63	0.61	0.899045
3581	dm3.chr2R	6,541,765 – 6,541,815	- - - - - - - -	4913	6,541,765 – 6,541,815	+	4	50	95.33	-1.50	0.93	0.743441
3581	dm3.chr2R	6,541,765 – 6,541,815	- - - - - - - -	4914	6,541,765 – 6,541,815	-	4	50	95.33	-1.52	1.00	0.932660
3582	dm3.chr2R	6,542,307 – 6,542,409	- - - - - - - -	4915	6,542,307 – 6,542,409	+	10	112	77.28	-2.33	0.47	0.941412
3582	dm3.chr2R	6,542,307 – 6,542,409	- - - - - - - -	4916	6,542,307 – 6,542,409	-	10	112	77.28	-1.96	0.42	0.623972
3583	dm3.chr2R	6,546,934 – 6,546,991	- - - - - - - -	4917	6,546,934 – 6,546,991	-	4	73	47.83	-1.26	0.32	0.682143
3584	dm3.chr2R	6,559,667 – 6,559,795	- - - - - - - -	4918	6,559,667 – 6,559,775	+	6	113	80.05	-2.17	0.50	0.749274
				4919	6,559,667 – 6,559,775	-	6	113	80.05	-1.85	0.55	0.651065
				4920	6,559,699 – 6,559,795	+	6	108	72.05	-1.93	0.55	0.974861
				4921	6,559,699 – 6,559,795	-	6	108	72.05	-1.02	0.54	0.526515
3585	dm3.chr2R	6,561,579 – 6,561,642	- - - intron="intron;ID=intron_FBgn0024836:1_FBgn0024836:2;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4922	6,561,579 – 6,561,642	+	7	71	74.69	-1.38	0.70	0.940266
3585	dm3.chr2R	6,561,579 – 6,561,642		4923	6,561,579 – 6,561,642	-	7	71	74.69	-1.13	0.63	0.761362
3586	dm3.chr2R	6,563,306 – 6,563,397	- - - intron="intron;ID=intron_FBgn0024836:1_FBgn0024836:2;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4924	6,563,306 – 6,563,397	-	8	95	69.17	-2.10	0.40	0.961706
3587	dm3.chr2R	6,565,640 – 6,565,730	- - - intron="intron;ID=intron_FBgn0024836:1_FBgn0024836:2;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4925	6,565,640 – 6,565,730	-	5	100	83.42	-1.15	0.84	0.604306
3588	dm3.chr2R	6,567,834 – 6,567,926	- - - intron="intron;ID=intron_FBgn0024836:1_FBgn0024836:2;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4926	6,567,834 – 6,567,926	+	6	108	82.45	-2.53	0.66	0.964423
3589	dm3.chr2R	6,572,642 – 6,572,733	- - - intron="intron;ID=intron_FBgn0024836:1_FBgn0024836:2;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4927	6,572,642 – 6,572,733	+	9	91	75.34	-1.09	0.60	0.806708
3590	dm3.chr2R	6,580,670 – 6,580,767	- - - intron="intron;ID=intron_FBgn0024836:2_FBgn0024836:4;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4928	6,580,670 – 6,580,767	+	5	98	82.13	-2.71	0.42	0.697822
3590	dm3.chr2R	6,580,670 – 6,580,767		4929	6,580,670 – 6,580,767	-	5	98	82.13	-1.93	0.60	0.655031
3591	dm3.chr2R	6,581,217 – 6,581,319	- - - intron="intron;ID=intron_FBgn0024836:2_FBgn0024836:4;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4930	6,581,217 – 6,581,319	+	5	118	82.02	-1.74	0.71	0.733856
3592	dm3.chr2R	6,586,415 – 6,586,472	- - - intron="intron;ID=intron_FBgn0024836:2_FBgn0024836:4;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4931	6,586,415 – 6,586,472	-	6	70	67.64	-1.47	0.51	0.867055
3593	dm3.chr2R	6,586,647 – 6,586,737	- - - intron="intron;ID=intron_FBgn0024836:2_FBgn0024836:4;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4932	6,586,647 – 6,586,737	-	6	92	75.78	-1.55	0.51	0.577482
3594	dm3.chr2R	6,587,916 – 6,588,022	- - - intron="intron;ID=intron_FBgn0024836:2_FBgn0024836:4;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4933	6,587,916 – 6,588,022	+	11	120	80.59	-1.44	0.62	0.565533
3595	dm3.chr2R	6,589,373 – 6,589,472	- - - intron="intron;ID=intron_FBgn0024836:2_FBgn0024836:4;Name=stan-in;Parent=FBtr0303223,FBtr0304899,FBtr0304900;parent_type=mRNA" - - - -	4934	6,589,373 – 6,589,472	+	5	100	98.09	-1.62	0.98	0.901688
3596	dm3.chr2R	6,604,916 – 6,605,050	- - - intron="intron;ID=intron_FBgn0024836:6_FBgn0024836:7;Name=stan-in;Parent=FBtr0304900;parent_type=mRNA" - - - -	4935	6,604,916 – 6,605,050	+	5	164	71.72	-3.09	0.53	0.997226
3596	dm3.chr2R	6,604,916 – 6,605,050		4936	6,604,916 – 6,605,050	-	5	164	71.72	-2.67	0.59	0.995041
3597	dm3.chr2R	6,619,591 – 6,619,688	- - - intron="intron;ID=intron_FBgn0033544:4_FBgn0033544:8;Name=CG7220-in;Parent=FBtr0088219,FBtr0088216;parent_type=mRNA" - - - -	4937	6,619,591 – 6,619,688	+	5	97	92.16	-2.37	0.70	0.645127
3598	dm3.chr2R	6,628,719 – 6,628,819	- - CDS="CDS;ID=CDS_FBgn0053144:2_528;Name=CG33144-cds;Parent=FBtr0088254;parent_type=mRNA" - - - - -	4938	6,628,719 – 6,628,819	-	14	113	75.18	-0.52	0.71	0.672144
3599	dm3.chr2R	6,635,398 – 6,635,510	- - - intron="intron;ID=intron_FBgn0053144:5_FBgn0053144:4;Name=CG33144-in;Parent=FBtr0088254,FBtr0302517;parent_type=mRNA" - - - -	4939	6,635,398 – 6,635,510	-	5	120	81.60	-1.41	0.79	0.741445
3600	dm3.chr2R	6,635,800 – 6,635,901	- - - intron="intron;ID=intron_FBgn0053144:5_FBgn0053144:4;Name=CG33144-in;Parent=FBtr0088254,FBtr0302517;parent_type=mRNA" - - - -	4940	6,635,800 – 6,635,901	+	3	117	82.91	-2.94	0.79	0.991722
3601	dm3.chr2R	6,636,171 – 6,636,267	- - - intron="intron;ID=intron_FBgn0053144:5_FBgn0053144:4;Name=CG33144-in;Parent=FBtr0088254,FBtr0302517;parent_type=mRNA" - - - -	4941	6,636,171 – 6,636,267	+	6	113	80.09	-2.12	0.69	0.947737
3601	dm3.chr2R	6,636,171 – 6,636,267		4942	6,636,171 – 6,636,267	-	6	113	80.09	-2.15	0.62	0.902279
3602	dm3.chr2R	6,637,947 – 6,638,042	- - - intron="intron;ID=intron_FBgn0053144:5_FBgn0053144:4;Name=CG33144-in;Parent=FBtr0088254,FBtr0302517;parent_type=mRNA" - - - -	4943	6,637,947 – 6,638,042	-	3	103	77.74	-2.01	0.61	0.698297
3603	dm3.chr2R	6,647,225 – 6,647,342	- - - intron="intron;ID=intron_FBgn0053144:7_FBgn0053144:6;Name=CG33144-in;Parent=FBtr0088254,FBtr0302517;parent_type=mRNA" - - - -	4944	6,647,225 – 6,647,342	-	6	119	86.36	-2.15	0.72	0.885356
3604	dm3.chr2R	6,647,909 – 6,648,029	- - - intron="intron;ID=intron_FBgn0053144:8_FBgn0053144:7;Name=CG33144-in;Parent=FBtr0088254;parent_type=mRNA" - - - -	4945	6,647,909 – 6,648,029	+	5	120	96.50	-1.84	0.92	0.860701
3605	dm3.chr2R	6,648,066 – 6,648,240	- - - intron="intron;ID=intron_FBgn0053144:8_FBgn0053144:7;Name=CG33144-in;Parent=FBtr0088254;parent_type=mRNA" - - - -	4946	6,648,066 – 6,648,240	+	3	188	87.52	-3.92	0.80	0.997920
3605	dm3.chr2R	6,648,066 – 6,648,240		4947	6,648,066 – 6,648,240	-	3	188	87.52	-3.43	0.81	0.995365
3606	dm3.chr2R	6,652,762 – 6,652,862	- - - intron="intron;ID=intron_FBgn0053144:8_FBgn0053144:7;Name=CG33144-in;Parent=FBtr0088254;parent_type=mRNA" - - - -	4948	6,652,762 – 6,652,862	-	4	118	69.27	-2.63	0.35	0.846285
3607	dm3.chr2R	6,654,204 – 6,654,292	- - - intron="intron;ID=intron_FBgn0053144:8_FBgn0053144:7;Name=CG33144-in;Parent=FBtr0088254;parent_type=mRNA" - - - -	4949	6,654,204 – 6,654,292	+	5	92	86.81	-1.57	0.81	0.652526
3608	dm3.chr2R	6,658,797 – 6,658,913	- - - intron="intron;ID=intron_FBgn0053144:8_FBgn0053144:7;Name=CG33144-in;Parent=FBtr0088254;parent_type=mRNA" - - - -	4950	6,658,797 – 6,658,913	-	4	120	71.89	-1.93	0.42	0.553852
3609	dm3.chr2R	6,660,001 – 6,660,122	- - - intron="intron;ID=intron_FBgn0053144:8_FBgn0053144:7;Name=CG33144-in;Parent=FBtr0088254;parent_type=mRNA" - - - -	4951	6,660,001 – 6,660,122	+	6	122	72.70	-1.22	0.58	0.728363
3610	dm3.chr2R	6,664,243 – 6,664,392	- - - intron="intron;ID=intron_FBgn0053144:8_FBgn0053144:7;Name=CG33144-in;Parent=FBtr0088254;parent_type=mRNA" - - - -	4952	6,664,243 – 6,664,392	-	5	177	78.44	-1.85	0.53	0.511164
3611	dm3.chr2R	6,664,637 – 6,664,735	- - - intron="intron;ID=intron_FBgn0053144:8_FBgn0053144:7;Name=CG33144-in;Parent=FBtr0088254;parent_type=mRNA" - - - -	4953	6,664,637 – 6,664,735	+	5	99	83.93	-1.21	0.83	0.638756
3612	dm3.chr2R	6,667,401 – 6,667,514	- - - intron="intron;ID=intron_FBgn0053144:8_FBgn0053144:7;Name=CG33144-in;Parent=FBtr0088254;parent_type=mRNA" - - - -	4954	6,667,401 – 6,667,514	+	5	121	74.21	-1.95	0.51	0.868607
3612	dm3.chr2R	6,667,401 – 6,667,514		4955	6,667,401 – 6,667,514	-	5	121	74.21	-2.86	0.46	0.986721
3613	dm3.chr2R	6,672,934 – 6,673,037	- - - - - - - -	4956	6,672,934 – 6,673,037	+	7	103	70.26	-1.22	0.59	0.934521
3614	dm3.chr2R	6,677,316 – 6,677,423	- - - - - - - -	4957	6,677,316 – 6,677,423	-	6	120	71.33	-1.21	0.52	0.655485
3615	dm3.chr2R	6,683,181 – 6,683,294	- - - - - - - -	4958	6,683,181 – 6,683,294	+	7	113	76.67	-1.36	0.69	0.870508
3615	dm3.chr2R	6,683,181 – 6,683,294	- - - - - - - -	4959	6,683,181 – 6,683,294	-	7	113	76.67	-2.19	0.55	0.959384
3616	dm3.chr2R	6,696,038 – 6,696,134	- - - intron="intron;ID=intron_CG12340:1_CG12340:2;Name=wde-in;Parent=FBtr0088253;parent_type=mRNA" - - - -	4960	6,696,038 – 6,696,134	+	5	106	76.59	-2.01	0.68	0.969997
3617	dm3.chr2R	6,697,151 – 6,697,229	- - - - - - - -	4961	6,697,151 – 6,697,229	+	7	79	71.85	-2.60	0.30	0.905053
3618	dm3.chr2R	6,722,065 – 6,722,116	- - - - - - - -	4962	6,722,065 – 6,722,116	+	4	51	89.54	-1.26	0.95	0.815925
3619	dm3.chr2R	6,727,903 – 6,727,995	- - CDS="CDS;ID=CDS_FBgn0050015:1_693;Name=CG30015-cds;Parent=FBtr0113357;parent_type=mRNA" - - - - -	4963	6,727,903 – 6,727,995	+	5	92	89.80	-2.47	0.68	0.794046
3620	dm3.chr2R	6,732,403 – 6,732,454	- - - intron="intron;ID=intron_FBgn0050015:6_FBgn0050015:4;Name=CG30015-in;Parent=FBtr0113356,FBtr0306393;parent_type=mRNA" - - - -	4964	6,732,403 – 6,732,454	+	8	52	89.62	-1.97	0.69	0.513331
3620	dm3.chr2R	6,732,403 – 6,732,454		4965	6,732,403 – 6,732,454	-	8	52	89.62	-2.60	0.66	0.874398
3621	dm3.chr2R	6,738,334 – 6,738,436	- - - intron="intron;ID=intron_FBgn0050015:8_FBgn0050015:7;Name=CG30015-in;Parent=FBtr0088242,FBtr0088243,FBtr0113356,FBtr0306393;parent_type=mRNA" - - - -	4966	6,738,334 – 6,738,436	-	3	106	80.46	-1.90	0.71	0.726724
3622	dm3.chr2R	6,745,545 – 6,745,639	- - - intron="intron;ID=intron_FBgn0050015:9_FBgn0050015:8;Name=CG30015-in;Parent=FBtr0088242,FBtr0088243,FBtr0113356,FBtr0306393;parent_type=mRNA" - - - -	4967	6,745,545 – 6,745,639	+	9	117	72.70	-1.16	0.55	0.659841
3623	dm3.chr2R	6,747,908 – 6,748,013	- - - intron="intron;ID=intron_FBgn0050015:9_FBgn0050015:8;Name=CG30015-in;Parent=FBtr0088242,FBtr0088243,FBtr0113356,FBtr0306393;parent_type=mRNA" - - - -	4968	6,747,908 – 6,748,013	-	4	109	66.51	-1.11	0.51	0.565396
3624	dm3.chr2R	6,768,576 – 6,768,736	- - CDS="CDS;ID=CDS_FBgn0033564:5_631;Name=CG11919-cds;Parent=FBtr0100498,FBtr0301705;parent_type=mRNA" - - - - -	4969	6,768,576 – 6,768,696	+	13	120	76.90	-1.59	0.44	0.646492
3624	dm3.chr2R	6,768,576 – 6,768,736		4970	6,768,616 – 6,768,736	+	13	120	74.12	-1.75	0.37	0.726649
3625	dm3.chr2R	6,778,466 – 6,778,583	- - CDS="CDS;ID=CDS_CG30020:11_520;Name=CG30020-cds;Parent=FBtr0088235;parent_type=mRNA" - - - - -	4971	6,778,466 – 6,778,583	+	12	120	71.52	-1.51	0.37	0.633352
3625	dm3.chr2R	6,778,466 – 6,778,583		4972	6,778,466 – 6,778,583	-	12	120	71.52	-0.88	0.47	0.537730
3626	dm3.chr2R	6,802,184 – 6,802,234	- - - - - - - -	4973	6,802,184 – 6,802,234	-	8	66	74.79	-1.62	0.55	0.755316
3627	dm3.chr2R	6,806,829 – 6,806,925	- - - - - - - -	4974	6,806,829 – 6,806,925	+	8	116	73.77	-2.34	0.37	0.855708
3628	dm3.chr2R	6,817,176 – 6,817,226	- - - - - - - -	4975	6,817,176 – 6,817,226	-	5	50	100.00	-1.00	1.00	0.632514
3629	dm3.chr2R	6,825,029 – 6,825,138	- - - - - - - -	4976	6,825,029 – 6,825,138	+	4	119	63.74	-1.56	0.39	0.667168
3630	dm3.chr2R	6,830,012 – 6,830,110	- - - - - - - -	4977	6,830,012 – 6,830,110	+	6	106	82.38	-2.88	0.68	0.992269
3630	dm3.chr2R	6,830,012 – 6,830,110	- - - - - - - -	4978	6,830,012 – 6,830,110	-	6	106	82.38	-1.93	0.59	0.642794
3631	dm3.chr2R	6,830,845 – 6,830,916	- - - - - - - -	4979	6,830,845 – 6,830,916	-	8	71	66.48	-1.89	0.33	0.844042
3632	dm3.chr2R	6,832,166 – 6,832,300	- - - - - - - -	4980	6,832,166 – 6,832,300	+	12	144	76.33	-1.43	0.49	0.660281
3633	dm3.chr2R	6,833,792 – 6,833,890	- - - - - - - -	4981	6,833,792 – 6,833,890	-	11	103	74.60	-1.22	0.60	0.885823
3634	dm3.chr2R	6,845,294 – 6,845,365	- - - - - - - -	4982	6,845,294 – 6,845,365	+	6	87	73.73	-2.10	0.57	0.958295
3635	dm3.chr2R	6,845,423 – 6,845,496	- - - - - - - -	4983	6,845,423 – 6,845,496	+	7	87	74.21	-1.82	0.47	0.745361
3636	dm3.chr2R	6,845,534 – 6,845,638	- - - - - - - -	4984	6,845,534 – 6,845,638	+	5	106	77.60	-2.12	0.68	0.970938
3637	dm3.chr2R	6,848,124 – 6,848,188	- - - - - - - -	4985	6,848,124 – 6,848,188	+	5	64	98.44	-1.18	0.99	0.743146
3637	dm3.chr2R	6,848,124 – 6,848,188	- - - - - - - -	4986	6,848,124 – 6,848,188	-	5	64	98.44	-1.54	0.93	0.680231
3638	dm3.chr2R	6,853,390 – 6,853,497	- - - - - - - -	4987	6,853,390 – 6,853,497	+	11	112	83.96	-1.74	0.67	0.718620
3638	dm3.chr2R	6,853,390 – 6,853,497	- - - - - - - -	4988	6,853,390 – 6,853,497	-	11	112	83.96	-1.54	0.69	0.610305
3639	dm3.chr2R	6,856,160 – 6,856,265	- - - - - - - -	4989	6,856,160 – 6,856,265	-	10	115	69.98	-1.76	0.33	0.628730
3640	dm3.chr2R	6,860,371 – 6,860,437	- - - - - - - -	4990	6,860,371 – 6,860,437	+	6	67	68.85	-1.38	0.45	0.852014
3640	dm3.chr2R	6,860,371 – 6,860,437	- - - - - - - -	4991	6,860,371 – 6,860,437	-	6	67	68.85	-1.26	0.61	0.975929
3641	dm3.chr2R	6,862,198 – 6,862,313	- - - - - - - -	4992	6,862,198 – 6,862,313	-	6	120	85.43	-2.25	0.54	0.530588
3642	dm3.chr2R	6,873,521 – 6,873,655	- - - intron="intron;ID=intron_FBgn0040765:2_FBgn0040765:1;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	4993	6,873,521 – 6,873,655	+	5	151	80.46	-1.36	0.86	0.865511
3643	dm3.chr2R	6,880,134 – 6,880,215	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	4994	6,880,134 – 6,880,215	-	4	81	79.92	-1.46	0.77	0.785476
3644	dm3.chr2R	6,883,381 – 6,883,507	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	4995	6,883,381 – 6,883,483	-	7	103	79.88	-1.46	0.57	0.520592
3644	dm3.chr2R	6,883,381 – 6,883,507		4996	6,883,405 – 6,883,507	+	6	119	75.99	-2.06	0.59	0.930996
3645	dm3.chr2R	6,886,395 – 6,886,499	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	4997	6,886,395 – 6,886,499	-	10	114	74.10	-1.24	0.55	0.815553
3646	dm3.chr2R	6,890,855 – 6,890,923	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	4998	6,890,855 – 6,890,923	+	8	75	54.13	-2.17	0.17	0.872074
3647	dm3.chr2R	6,894,665 – 6,894,779	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	4999	6,894,665 – 6,894,779	+	7	119	72.29	-1.03	0.53	0.688697
3648	dm3.chr2R	6,895,963 – 6,896,058	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5000	6,895,963 – 6,896,058	-	7	101	91.83	-2.43	0.80	0.933685
3649	dm3.chr2R	6,908,908 – 6,908,968	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5001	6,908,908 – 6,908,968	-	4	60	56.11	-0.89	0.40	0.694839
3650	dm3.chr2R	6,911,987 – 6,912,079	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5002	6,911,987 – 6,912,079	+	4	104	50.66	-1.40	0.28	0.601584
3651	dm3.chr2R	6,918,352 – 6,918,442	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5003	6,918,352 – 6,918,442	+	8	109	69.61	-1.63	0.47	0.906729
3652	dm3.chr2R	6,926,857 – 6,926,971	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5004	6,926,857 – 6,926,958	+	5	108	85.15	-3.47	0.86	0.998345
				5005	6,926,857 – 6,926,958	-	5	108	85.15	-1.69	0.76	0.704354
				5006	6,926,879 – 6,926,971	+	4	102	88.97	-3.72	0.89	0.998348
				5007	6,926,879 – 6,926,971	-	4	102	88.97	-3.29	0.98	0.998343
3653	dm3.chr2R	6,930,327 – 6,930,425	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5008	6,930,327 – 6,930,425	+	6	106	82.65	-1.91	0.77	0.923968
3654	dm3.chr2R	6,931,184 – 6,931,281	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5009	6,931,184 – 6,931,281	+	5	109	89.18	-1.08	0.90	0.500000
3654	dm3.chr2R	6,931,184 – 6,931,281		5010	6,931,184 – 6,931,281	-	5	109	89.18	-2.87	0.74	0.965940
3655	dm3.chr2R	6,932,195 – 6,932,342	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5011	6,932,195 – 6,932,302	+	6	108	92.92	-1.57	0.94	0.880814
				5012	6,932,235 – 6,932,342	+	6	108	88.69	-2.11	0.81	0.918768
				5013	6,932,235 – 6,932,342	-	6	108	88.69	-1.90	0.78	0.785422
3656	dm3.chr2R	6,933,109 – 6,933,221	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5014	6,933,109 – 6,933,221	+	5	112	78.43	-2.29	0.59	0.939260
3656	dm3.chr2R	6,933,109 – 6,933,221		5015	6,933,111 – 6,933,221	+	5	110	78.41	-2.45	0.59	0.964798
3657	dm3.chr2R	6,945,115 – 6,945,181	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5016	6,945,115 – 6,945,181	+	6	68	85.94	-1.77	0.70	0.569131
3658	dm3.chr2R	6,947,695 – 6,947,787	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5017	6,947,695 – 6,947,787	+	5	98	63.45	-0.90	0.45	0.633862
3659	dm3.chr2R	6,949,068 – 6,949,173	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5018	6,949,068 – 6,949,173	+	6	118	75.76	-1.70	0.75	0.972175
3660	dm3.chr2R	6,951,792 – 6,951,884	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5019	6,951,792 – 6,951,884	-	5	95	88.18	-2.94	0.71	0.974588
3661	dm3.chr2R	6,961,079 – 6,961,170	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5020	6,961,079 – 6,961,170	+	10	97	71.90	-1.19	0.44	0.630977
3662	dm3.chr2R	6,966,690 – 6,966,785	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5021	6,966,690 – 6,966,785	+	5	105	62.75	-1.36	0.37	0.558317
3663	dm3.chr2R	6,966,980 – 6,967,034	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5022	6,966,980 – 6,967,034	+	4	54	85.19	-1.65	0.77	0.650586
3664	dm3.chr2R	6,969,243 – 6,969,338	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5023	6,969,243 – 6,969,338	+	11	107	81.05	-1.18	0.74	0.681835
3665	dm3.chr2R	6,970,335 – 6,970,456	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5024	6,970,335 – 6,970,425	+	4	96	84.64	-2.89	0.85	0.994399
				5025	6,970,335 – 6,970,425	-	4	96	84.64	-2.30	0.80	0.958553
				5026	6,970,356 – 6,970,456	-	5	107	68.81	-1.49	0.44	0.542298
3666	dm3.chr2R	6,972,597 – 6,972,685	- - - intron="intron;ID=intron_FBgn0040765:4_FBgn0040765:3;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5027	6,972,597 – 6,972,685	+	4	90	85.77	-3.18	0.62	0.970897
3666	dm3.chr2R	6,972,597 – 6,972,685		5028	6,972,597 – 6,972,685	-	4	90	85.77	-2.46	0.73	0.927335
3667	dm3.chr2R	6,978,704 – 6,978,805	- - - - - - - -	5029	6,978,704 – 6,978,805	-	6	110	76.28	-1.38	0.56	0.530656
3668	dm3.chr2R	6,980,930 – 6,981,039	- - - - - - - -	5030	6,980,930 – 6,981,039	+	6	120	85.09	-1.50	0.75	0.589822
3669	dm3.chr2R	6,981,423 – 6,981,520	- - - - - - - -	5031	6,981,423 – 6,981,520	-	4	99	77.20	-2.01	0.54	0.705981
3670	dm3.chr2R	6,983,903 – 6,983,953	- - - - - - - -	5032	6,983,903 – 6,983,953	-	7	53	70.27	-1.15	0.54	0.882532
3671	dm3.chr2R	6,988,161 – 6,988,227	- - - intron="intron;ID=intron_FBgn0040765:5_FBgn0040765:4;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5033	6,988,161 – 6,988,227	+	5	70	78.61	-2.42	0.71	0.983781
3671	dm3.chr2R	6,988,161 – 6,988,227		5034	6,988,161 – 6,988,227	-	5	70	78.61	-2.33	0.98	0.995158
3672	dm3.chr2R	6,990,017 – 6,990,134	- - - intron="intron;ID=intron_FBgn0040765:5_FBgn0040765:4;Name=luna-in;Parent=FBtr0088210;parent_type=mRNA" - - - -	5035	6,990,017 – 6,990,134	-	5	120	88.75	-2.14	0.70	0.692944
3673	dm3.chr2R	7,018,704 – 7,018,806	- - - - - - - -	5036	7,018,704 – 7,018,806	-	7	109	69.05	-1.85	0.59	0.992828
3674	dm3.chr2R	7,027,701 – 7,027,821	- - CDS="CDS;ID=CDS_CG13229:7_529;Name=CG13229-cds;Parent=FBtr0088206;parent_type=mRNA" - - - - -	5037	7,027,701 – 7,027,821	-	7	120	72.18	-0.77	0.55	0.564328
3675	dm3.chr2R	7,032,155 – 7,032,235	- - - - - - - -	5038	7,032,155 – 7,032,235	-	3	80	90.42	-1.88	0.84	0.766596
3676	dm3.chr2R	7,040,997 – 7,041,095	- - - - - - - -	5039	7,040,997 – 7,041,095	+	6	100	74.46	-1.26	0.56	0.677751
3677	dm3.chr2R	7,043,744 – 7,043,848	- - - - - - - -	5040	7,043,744 – 7,043,848	+	6	116	81.42	-2.53	0.42	0.597915
3678	dm3.chr2R	7,044,018 – 7,044,126	- - - - - - - -	5041	7,044,018 – 7,044,126	-	6	115	76.70	-1.69	0.48	0.527163
3679	dm3.chr2R	7,044,679 – 7,044,781	- - - - - - - -	5042	7,044,679 – 7,044,781	-	3	103	80.58	-2.60	0.67	0.954963
3680	dm3.chr2R	7,059,606 – 7,059,697	- - - - - - - -	5043	7,059,606 – 7,059,697	-	7	94	67.49	-0.82	0.50	0.646385
3681	dm3.chr2R	7,059,732 – 7,059,843	- - - - - - - -	5044	7,059,732 – 7,059,843	+	8	117	70.48	-3.00	0.42	0.998170
3681	dm3.chr2R	7,059,732 – 7,059,843	- - - - - - - -	5045	7,059,732 – 7,059,843	-	8	117	70.48	-3.08	0.44	0.998920
3682	dm3.chr2R	7,062,597 – 7,062,689	- - - intron="intron;ID=intron_CG7734:11_CG7734:10;Name=shn-in;Parent=FBtr0088101;parent_type=mRNA" - - - -	5046	7,062,597 – 7,062,689	-	5	92	90.75	-1.41	0.87	0.602840
3683	dm3.chr2R	7,066,893 – 7,066,954	- - - intron="intron;ID=intron_CG7734:11_CG7734:10;Name=shn-in;Parent=FBtr0088101;parent_type=mRNA" - - - -	5047	7,066,893 – 7,066,954	+	7	70	72.06	-2.42	0.71	0.998530
3683	dm3.chr2R	7,066,893 – 7,066,954		5048	7,066,893 – 7,066,954	-	7	70	72.06	-2.60	0.41	0.980965
3684	dm3.chr2R	7,071,167 – 7,071,261	- - - intron="intron;ID=intron_CG7734:9_CG7734:10;Name=shn-in;Parent=FBtr0088098;parent_type=mRNA" - - - -	5049	7,071,167 – 7,071,261	+	9	99	74.16	-1.15	0.52	0.597009
3685	dm3.chr2R	7,078,213 – 7,078,311	- - - intron="intron;ID=intron_CG7734:10_CG7734:2;Name=shn-in;Parent=FBtr0088098,FBtr0088101;parent_type=mRNA" - - - -	5050	7,078,213 – 7,078,311	+	5	104	87.40	-1.31	0.83	0.500000
3686	dm3.chr2R	7,081,152 – 7,081,245	- - - intron="intron;ID=intron_CG7734:10_CG7734:2;Name=shn-in;Parent=FBtr0088098,FBtr0088101;parent_type=mRNA" - - - -	5051	7,081,152 – 7,081,245	+	4	120	75.56	-2.70	0.73	0.996780
3686	dm3.chr2R	7,081,152 – 7,081,245		5052	7,081,152 – 7,081,245	-	4	120	75.56	-2.00	0.74	0.979465
3687	dm3.chr2R	7,083,392 – 7,083,493	- - - intron="intron;ID=intron_CG7734:10_CG7734:2;Name=shn-in;Parent=FBtr0088098,FBtr0088101;parent_type=mRNA" - - - -	5053	7,083,392 – 7,083,493	+	4	105	67.78	-1.41	0.74	0.978855
3688	dm3.chr2R	7,118,775 – 7,118,869	- - - intron="intron;ID=intron_FBgn0050021:10_FBgn0050021:9;Name=metro-in;Parent=FBtr0088196,FBtr0114569,FBtr0114570;parent_type=mRNA" - - - -	5054	7,118,775 – 7,118,869	+	6	94	70.85	-2.45	0.46	0.993658
3688	dm3.chr2R	7,118,775 – 7,118,869		5055	7,118,775 – 7,118,869	-	6	94	70.85	-1.72	0.45	0.909553
3689	dm3.chr2R	7,125,741 – 7,125,850	- - CDS="CDS;ID=CDS_FBgn0033591:1_628;Name=CG13216-cds;Parent=FBtr0088193;parent_type=mRNA" - - - - -	5056	7,125,741 – 7,125,850	+	5	111	73.86	-1.61	0.61	0.911078
3690	dm3.chr2R	7,130,572 – 7,130,712	- - - - - - - -	5057	7,130,572 – 7,130,712	+	3	155	84.52	-2.75	0.69	0.947527
3690	dm3.chr2R	7,130,572 – 7,130,712	- - - - - - - -	5058	7,130,572 – 7,130,712	-	3	155	84.52	-2.36	0.75	0.918679
3691	dm3.chr2R	7,132,843 – 7,132,933	- - - - - - - -	5059	7,132,843 – 7,132,933	-	6	100	75.28	-1.86	0.58	0.927155
3692	dm3.chr2R	7,133,453 – 7,133,510	- - - - - - - -	5060	7,133,453 – 7,133,510	+	7	60	69.71	-2.01	0.48	0.980079
3693	dm3.chr2R	7,147,656 – 7,147,752	- - - - - - - -	5061	7,147,656 – 7,147,752	+	9	120	62.30	-1.72	0.33	0.812231
3694	dm3.chr2R	7,150,960 – 7,151,011	- - - - - - - -	5062	7,150,960 – 7,151,011	+	7	52	74.14	-0.89	0.74	0.859086
3695	dm3.chr2R	7,158,907 – 7,158,999	- - - intron="intron;ID=intron_FBgn0033603:17_FBgn0033603:16;Name=Cpr47Ef-in;Parent=FBtr0302718,FBtr0302719;parent_type=mRNA" - - - -	5063	7,158,907 – 7,158,999	+	6	105	71.38	-1.44	0.45	0.551524
3696	dm3.chr2R	7,162,623 – 7,162,734	- - CDS="CDS;ID=CDS_FBgn0010423:4_644;Name=TpnC47D-cds;Parent=FBtr0088184;parent_type=mRNA" intron="intron;ID=intron_FBgn0010423:4_FBgn0010423:3;Name=TpnC47D-in;Parent=FBtr0088184;parent_type=mRNA" - - - -	5064	7,162,623 – 7,162,734	-	5	113	54.79	-1.67	0.23	0.565084
3697	dm3.chr2R	7,193,972 – 7,194,065	- - - - - - - -	5065	7,193,972 – 7,194,065	-	12	102	63.00	-0.67	0.38	0.500000
3698	dm3.chr2R	7,205,013 – 7,205,110	- - - - - - - -	5066	7,205,013 – 7,205,110	-	7	108	69.28	-2.66	0.46	0.997746
3699	dm3.chr2R	7,209,949 – 7,210,055	- - - - - - - -	5067	7,209,949 – 7,210,055	+	5	106	96.04	-2.56	0.86	0.946653
3699	dm3.chr2R	7,209,949 – 7,210,055	- - - - - - - -	5068	7,209,949 – 7,210,055	-	5	106	96.04	-2.08	0.91	0.918794
3700	dm3.chr2R	7,245,048 – 7,245,156	FBnoncoding="tRNA;ID=FBtr0088156;Name=tRNA:SeC-RA;Parent=FBgn0011987;Dbxref=FlyBase_Annotation_IDs:CR30024-RA;score_text=Weakly" tRNAscann="SeCe_chr2R_trna85" - - "Rfam_10.0=RF00005;tRNA;ABKP02018690.1/6262-6344\|6.9e-24" - - "mirBase_v16=sme-mir-749\|1.1e-10"	5069	7,245,048 – 7,245,156	+	12	112	75.13	-1.35	0.68	0.980771
3700	dm3.chr2R	7,245,048 – 7,245,156		5070	7,245,048 – 7,245,156	-	12	112	75.13	-0.66	0.78	0.904939
3701	dm3.chr2R	7,246,448 – 7,246,516	- - CDS="CDS;ID=CDS_FBgn0033624:4_661;Name=CG12384-cds;Parent=FBtr0088155;parent_type=mRNA" - - - - -	5071	7,246,448 – 7,246,516	+	13	74	79.27	-1.42	0.62	0.866807
3702	dm3.chr2R	7,256,694 – 7,256,794	- - CDS="CDS;ID=CDS_CG13204:3_501;Name=CG13204-cds;Parent=FBtr0088129;parent_type=mRNA" - - - - -	5072	7,256,694 – 7,256,794	+	9	105	66.17	-1.32	0.39	0.819795
3702	dm3.chr2R	7,256,694 – 7,256,794		5073	7,256,694 – 7,256,794	-	9	105	66.17	-1.45	0.35	0.750152
3703	dm3.chr2R	7,260,942 – 7,261,043	- - - - - - - -	5074	7,260,942 – 7,261,043	+	9	113	73.55	-2.12	0.42	0.915449
3704	dm3.chr2R	7,264,157 – 7,264,271	- - CDS="CDS;ID=CDS_FBgn0033628:4_670;Name=CG13203-cds;Parent=FBtr0304902;parent_type=mRNA" - - - - -	5075	7,264,157 – 7,264,271	+	4	114	78.36	-1.66	0.70	0.822483
3705	dm3.chr2R	7,271,676 – 7,271,786	- - - - - - - -	5076	7,271,676 – 7,271,786	-	5	112	85.53	-2.33	0.65	0.817373
3706	dm3.chr2R	7,281,823 – 7,281,929	FBnoncoding="tRNA;ID=FBtr0088131;Name=tRNA:CR30257-RA;Parent=FBgn0050257;Alias=CR30257-RA;Dbxref=FlyBase_Annotation_IDs:CR30257-RA;score_text=Weakly" tRNAscann="Thr_chr2R_trna14" - intron="intron;ID=intron_CG30023:1_CG30023:2;Name=sprt-in;Parent=FBtr0088146;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAJJ01000381.1/59414-59485\|4.9e-34" - - -	5077	7,281,823 – 7,281,929	+	13	119	78.08	-0.64	0.81	0.739370
3706	dm3.chr2R	7,281,823 – 7,281,929		5078	7,281,823 – 7,281,929	-	13	119	78.08	-1.78	0.80	0.989286
3707	dm3.chr2R	7,287,274 – 7,287,394	FBnoncoding="tRNA;ID=FBtr0088145;Name=tRNA:CR30506-RA;Parent=FBgn0050506;Alias=CR30506-RA;Dbxref=FlyBase_Annotation_IDs:CR30506-RA;score_text=Weakly" tRNAscann="Thr_chr2R_trna84" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000381.1/59414-59485\|5.6e-34" - - -	5079	7,287,274 – 7,287,394	+	13	138	73.65	-1.49	0.67	0.986900
3707	dm3.chr2R	7,287,274 – 7,287,394		5080	7,287,274 – 7,287,394	-	13	138	73.65	-1.12	0.65	0.946792
3708	dm3.chr2R	7,292,175 – 7,292,291	- tRNAscann="Thr_chr2R_trna15" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000381.1/59414-59485\|5.4e-34" - - -	5081	7,292,175 – 7,292,291	+	13	120	75.23	-1.06	0.82	0.973623
3708	dm3.chr2R	7,292,175 – 7,292,291		5082	7,292,175 – 7,292,291	-	13	120	75.23	-1.52	0.76	0.992131
3709	dm3.chr2R	7,292,718 – 7,292,808	- tRNAscann="Thr_chr2R_trna83" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000381.1/59414-59485\|4.0e-34" - - -	5083	7,292,718 – 7,292,808	+	13	98	82.60	-2.43	0.99	0.996061
3709	dm3.chr2R	7,292,718 – 7,292,808		5084	7,292,718 – 7,292,808	-	13	98	82.60	-1.85	0.98	0.988768
3710	dm3.chr2R	7,303,756 – 7,303,829	- - - - - - - -	5085	7,303,756 – 7,303,829	-	4	75	65.16	-1.29	0.54	0.775162
3711	dm3.chr2R	7,305,717 – 7,305,776	- - - - - - - -	5086	7,305,717 – 7,305,776	-	5	61	61.49	-1.60	0.53	0.993339
3712	dm3.chr2R	7,307,565 – 7,307,707	- - - - - - - -	5087	7,307,565 – 7,307,667	-	5	110	61.14	-0.59	0.53	0.546581
3712	dm3.chr2R	7,307,565 – 7,307,707	- - - - - - - -	5088	7,307,605 – 7,307,707	-	4	102	70.59	-1.73	0.59	0.938715
3713	dm3.chr2R	7,340,195 – 7,340,288	- - - intron="intron;ID=intron_CG7776:12_CG7776:2;Name=E(Pc)-in;Parent=FBtr0088139;parent_type=mRNA" - - - -	5089	7,340,195 – 7,340,288	+	12	112	70.11	-1.11	0.47	0.620712
3714	dm3.chr2R	7,340,518 – 7,340,588	- - - intron="intron;ID=intron_CG7776:1_CG7776:2;Name=E(Pc)-in;Parent=FBtr0088140;parent_type=mRNA" - - - -	5090	7,340,518 – 7,340,588	+	5	70	97.14	-2.37	1.00	0.989737
3714	dm3.chr2R	7,340,518 – 7,340,588		5091	7,340,518 – 7,340,588	-	5	70	97.14	-1.06	1.00	0.749373
3715	dm3.chr2R	7,356,792 – 7,356,892	- - - - - - - -	5092	7,356,792 – 7,356,892	+	10	118	82.89	-2.46	0.56	0.901323
3715	dm3.chr2R	7,356,792 – 7,356,892	- - - - - - - -	5093	7,356,792 – 7,356,892	-	10	118	82.89	-3.14	0.76	0.997582
3716	dm3.chr2R	7,365,351 – 7,365,437	- - - intron="intron;ID=intron_CG17835:6_CG17835:3;Name=inv-in;Parent=FBtr0088070,FBtr0088069;parent_type=mRNA" - - - -	5094	7,365,351 – 7,365,437	+	10	94	81.65	-0.75	0.83	0.610863
3717	dm3.chr2R	7,367,565 – 7,367,655	- - - intron="intron;ID=intron_CG17835:6_CG17835:3;Name=inv-in;Parent=FBtr0088070,FBtr0088069;parent_type=mRNA" - - - -	5095	7,367,565 – 7,367,655	+	5	91	81.43	-2.32	0.60	0.915327
3718	dm3.chr2R	7,370,096 – 7,370,153	- - - intron="intron;ID=intron_CG17835:6_CG17835:3;Name=inv-in;Parent=FBtr0088070,FBtr0088069;parent_type=mRNA" - - - -	5096	7,370,096 – 7,370,153	-	5	57	92.63	-2.42	0.88	0.966973
3719	dm3.chr2R	7,379,587 – 7,379,699	- - - intron="intron;ID=intron_CG17835:6_CG17835:3;Name=inv-in;Parent=FBtr0088070,FBtr0088069;parent_type=mRNA" - - - -	5097	7,379,587 – 7,379,677	-	9	109	74.12	-1.84	0.58	0.961879
3719	dm3.chr2R	7,379,587 – 7,379,699		5098	7,379,606 – 7,379,699	-	12	119	79.58	-1.48	0.68	0.776049
3720	dm3.chr2R	7,381,667 – 7,381,760	- - - intron="intron;ID=intron_CG17835:6_CG17835:3;Name=inv-in;Parent=FBtr0088070,FBtr0088069;parent_type=mRNA" - - - -	5099	7,381,667 – 7,381,760	+	12	120	85.75	-2.77	0.66	0.975809
3720	dm3.chr2R	7,381,667 – 7,381,760		5100	7,381,667 – 7,381,760	-	12	120	85.75	-2.24	0.68	0.900136
3721	dm3.chr2R	7,388,828 – 7,388,919	- - - intron="intron;ID=intron_CG17835:6_CG17835:3;Name=inv-in;Parent=FBtr0088070,FBtr0088069;parent_type=mRNA" - - - -	5101	7,388,828 – 7,388,919	+	6	91	87.18	-1.37	0.79	0.500000
3722	dm3.chr2R	7,399,545 – 7,399,664	- - - - - - - -	5102	7,399,545 – 7,399,635	-	12	117	75.66	-2.09	0.63	0.985596
3722	dm3.chr2R	7,399,545 – 7,399,664	- - - - - - - -	5103	7,399,573 – 7,399,664	+	8	93	73.42	-1.07	0.55	0.680702
3723	dm3.chr2R	7,399,876 – 7,399,932	- - - - - - - -	5104	7,399,876 – 7,399,932	-	4	56	90.18	-1.48	0.87	0.658575
3724	dm3.chr2R	7,408,969 – 7,409,053	- - - - - - - -	5105	7,408,969 – 7,409,053	+	7	97	70.61	-1.68	0.45	0.869403
3725	dm3.chr2R	7,415,738 – 7,415,835	- - - - - - - -	5106	7,415,738 – 7,415,835	-	11	103	76.06	-1.78	0.45	0.766365
3726	dm3.chr2R	7,422,470 – 7,422,533	- - - - - - - -	5107	7,422,470 – 7,422,533	+	9	67	74.69	-1.42	0.47	0.703929
3727	dm3.chr2R	7,439,327 – 7,439,435	- - - - - - - -	5108	7,439,327 – 7,439,435	+	12	114	78.49	-2.87	0.52	0.996875
3727	dm3.chr2R	7,439,327 – 7,439,435	- - - - - - - -	5109	7,439,327 – 7,439,435	-	12	114	78.49	-1.64	0.56	0.898753
3728	dm3.chr2R	7,442,281 – 7,442,361	- - - - - - - -	5110	7,442,281 – 7,442,361	-	7	81	77.35	-2.21	0.62	0.987133
3729	dm3.chr2R	7,454,404 – 7,454,495	- - - - - - - -	5111	7,454,404 – 7,454,495	+	6	104	71.18	-1.37	0.51	0.781626
3730	dm3.chr2R	7,478,914 – 7,479,012	FBnoncoding="snoRNA;ID=FBtr0091640;Name=snoRNA:Psi28S-1180-RA;Parent=FBgn0086658;Alias=snoRNA:535-RA;Dbxref=FlyBase_Annotation_IDs:CR33661-RA,REFSEQ:NR_002542;score_text=Weakly" - - intron="intron;ID=intron_FBgn0033636:19_FBgn0033636:18;Name=tou-in;Parent=FBtr0088091,FBtr0113066;parent_type=mRNA" - - - -	5112	7,478,914 – 7,479,012	-	12	118	60.44	-1.72	0.25	0.760697
3731	dm3.chr2R	7,479,250 – 7,479,355	- - CDS="CDS;ID=CDS_FBgn0033636:19_583;Name=tou-cds;Parent=FBtr0088091,FBtr0113066;parent_type=mRNA" - - - - -	5113	7,479,250 – 7,479,355	-	12	118	74.78	-1.55	0.44	0.640877
3732	dm3.chr2R	7,486,376 – 7,486,478	- - - intron="intron;ID=intron_FBgn0033636:21_FBgn0033636:20;Name=tou-in;Parent=FBtr0088091,FBtr0113066;parent_type=mRNA" - - - -	5114	7,486,376 – 7,486,478	+	7	108	71.92	-2.44	0.58	0.995751
3732	dm3.chr2R	7,486,376 – 7,486,478		5115	7,486,376 – 7,486,478	-	7	108	71.92	-3.36	0.45	0.998545
3733	dm3.chr2R	7,490,511 – 7,490,564	- - - intron="intron;ID=intron_FBgn0033636:21_FBgn0033636:20;Name=tou-in;Parent=FBtr0088091,FBtr0113066;parent_type=mRNA" - - - -	5116	7,490,511 – 7,490,564	+	5	60	63.46	-1.20	0.73	0.987659
3734	dm3.chr2R	7,502,784 – 7,502,900	- - - intron="intron;ID=intron_FBgn0033636:21_FBgn0033636:20;Name=tou-in;Parent=FBtr0088091,FBtr0113066;parent_type=mRNA" - - - -	5117	7,502,784 – 7,502,900	+	6	117	80.28	-2.04	0.65	0.940334
3735	dm3.chr2R	7,503,756 – 7,503,846	- - - - - - - -	5118	7,503,756 – 7,503,846	-	5	90	93.21	-1.59	0.98	0.937693
3736	dm3.chr2R	7,511,678 – 7,511,784	- - CDS="CDS;ID=CDS_FBgn0033638:7_686;Name=CG9005-cds;Parent=FBtr0306029;parent_type=mRNA" - - - - -	5119	7,511,678 – 7,511,784	+	13	120	78.89	-2.05	0.53	0.925263
3736	dm3.chr2R	7,511,678 – 7,511,784		5120	7,511,678 – 7,511,784	-	13	120	78.89	-2.39	0.54	0.978810
3737	dm3.chr2R	7,521,515 – 7,521,578	- - - intron="intron;ID=intron_FBgn0033638:11_FBgn0033638:9;Name=CG9005-in;Parent=FBtr0306030;parent_type=mRNA" - - - -	5121	7,521,515 – 7,521,578	+	6	63	74.71	-1.25	0.51	0.513984
3738	dm3.chr2R	7,523,799 – 7,523,915	- - - - - - - -	5122	7,523,799 – 7,523,915	-	5	116	82.36	-1.64	0.68	0.560476
3739	dm3.chr2R	7,539,439 – 7,539,559	- - CDS="CDS;ID=CDS_FBgn0085257:1_575;Name=CG34228-cds;Parent=FBtr0112421;parent_type=mRNA" - - - - -	5123	7,539,439 – 7,539,559	+	14	120	72.43	-0.87	0.46	0.547032
3740	dm3.chr2R	7,540,151 – 7,540,249	FBnoncoding="tRNA;ID=FBtr0088071;Name=tRNA:M2:48Ba-RA;Parent=FBgn0011915;Dbxref=FlyBase_Annotation_IDs:CR30255-RA;score_text=Weakly" tRNAscann="Met_chr2R_trna16" - - "Rfam_10.0=RF00005;tRNA;AAWU01021761.1/90707-90779\|9.6e-23" - - -	5124	7,540,151 – 7,540,249	+	11	108	81.14	-1.13	0.93	0.933969
3740	dm3.chr2R	7,540,151 – 7,540,249		5125	7,540,151 – 7,540,249	-	11	108	81.14	-1.48	0.93	0.972572
3741	dm3.chr2R	7,548,027 – 7,548,187	FBnoncoding="tRNA;ID=FBtr0088086;Name=tRNA:M2:48Bb-RA;Parent=FBgn0011916;Dbxref=FlyBase_Annotation_IDs:CR32844-RA;score_text=Weakly" tRNAscann="Met_chr2R_trna81" - - "Rfam_10.0=RF00005;tRNA;AAWU01021761.1/90707-90779\|1.7e-22" - - -	5126	7,548,027 – 7,548,187	+	10	170	68.60	-0.38	0.60	0.791521
3741	dm3.chr2R	7,548,027 – 7,548,187		5127	7,548,027 – 7,548,187	-	10	170	68.60	-0.92	0.59	0.960337
3742	dm3.chr2R	7,549,829 – 7,549,934	- - - - - - - -	5128	7,549,829 – 7,549,934	-	4	105	83.25	-2.31	0.58	0.690065
3743	dm3.chr2R	7,557,983 – 7,558,073	- - - intron="intron;ID=intron_FBgn0050035:3_FBgn0050035:4;Name=Tret1-1-in;Parent=FBtr0088073;parent_type=mRNA" - - - -	5129	7,557,983 – 7,558,073	+	6	99	74.73	-1.60	0.49	0.553191
3743	dm3.chr2R	7,557,983 – 7,558,073		5130	7,557,983 – 7,558,073	-	6	99	74.73	-1.77	0.50	0.742735
3744	dm3.chr2R	7,563,550 – 7,563,600	- - CDS="CDS;ID=CDS_FBgn0033644:1_658;Name=Tret1-2-cds;Parent=FBtr0088075;parent_type=mRNA" - - - - -	5131	7,563,550 – 7,563,600	+	11	50	80.84	-1.16	0.75	0.810472
3745	dm3.chr2R	7,590,109 – 7,590,165	- - - - - - - -	5132	7,590,109 – 7,590,165	-	3	56	88.10	-0.93	0.96	0.641410
3746	dm3.chr2R	7,591,635 – 7,591,733	- - - - - - - -	5133	7,591,635 – 7,591,733	-	11	103	73.94	-1.33	0.46	0.681290
3747	dm3.chr2R	7,604,379 – 7,604,439	- - - intron="intron;ID=intron_FBgn0033649:1_FBgn0033649:2;Name=pyr-in;Parent=FBtr0113070;parent_type=mRNA" - - - -	5134	7,604,379 – 7,604,439	-	5	63	88.28	-1.33	0.85	0.556579
3748	dm3.chr2R	7,612,148 – 7,612,246	- - CDS="CDS;ID=CDS_FBgn0033649:5_578;Name=pyr-cds;Parent=FBtr0113070;parent_type=mRNA" - - - - -	5135	7,612,148 – 7,612,246	+	4	102	62.38	-1.27	0.46	0.840547
3749	dm3.chr2R	7,613,486 – 7,613,581	- - CDS="CDS;ID=CDS_FBgn0033649:5_578;Name=pyr-cds;Parent=FBtr0113070;parent_type=mRNA" - - - - -	5136	7,613,486 – 7,613,581	+	6	115	72.46	-2.40	0.43	0.922301
3749	dm3.chr2R	7,613,486 – 7,613,581		5137	7,613,486 – 7,613,581	-	6	115	72.46	-1.25	0.56	0.557117
3750	dm3.chr2R	7,619,427 – 7,619,518	- - - - - - - -	5138	7,619,427 – 7,619,518	+	11	118	63.42	-2.03	0.39	0.977542
3751	dm3.chr2R	7,626,717 – 7,626,811	- - - - - - - -	5139	7,626,717 – 7,626,811	-	3	94	90.44	-2.28	0.87	0.943608
3752	dm3.chr2R	7,631,561 – 7,631,611	- - - - - - - -	5140	7,631,561 – 7,631,611	+	3	56	86.42	-0.90	0.99	0.767683
3752	dm3.chr2R	7,631,561 – 7,631,611	- - - - - - - -	5141	7,631,561 – 7,631,611	-	3	56	86.42	-3.35	1.02	0.998762
3753	dm3.chr2R	7,634,513 – 7,634,605	- - - - - - - -	5142	7,634,513 – 7,634,605	+	5	100	87.56	-1.71	0.79	0.715071
3754	dm3.chr2R	7,634,697 – 7,634,794	- - - - - - - -	5143	7,634,697 – 7,634,794	+	7	114	59.04	-1.34	0.35	0.827957
3755	dm3.chr2R	7,645,372 – 7,645,475	- - - - - - - -	5144	7,645,372 – 7,645,466	-	6	98	90.49	-2.61	0.82	0.973585
3755	dm3.chr2R	7,645,372 – 7,645,475	- - - - - - - -	5145	7,645,372 – 7,645,475	-	6	106	89.87	-1.92	0.79	0.764039
3756	dm3.chr2R	7,649,246 – 7,649,347	- - - - - - - -	5146	7,649,246 – 7,649,347	-	10	116	65.23	-1.40	0.33	0.580214
3757	dm3.chr2R	7,650,256 – 7,650,353	- - - - - - - -	5147	7,650,256 – 7,650,353	-	5	105	90.42	-2.52	0.76	0.920598
3758	dm3.chr2R	7,654,062 – 7,654,118	- - - - - - - -	5148	7,654,062 – 7,654,118	+	5	61	90.52	-2.66	0.86	0.983650
3759	dm3.chr2R	7,665,132 – 7,665,204	- - - intron="intron;ID=intron_FBgn0033652:1_FBgn0033652:3;Name=ths-in;Parent=FBtr0304622;parent_type=mRNA" - - - -	5149	7,665,132 – 7,665,204	+	5	72	87.27	-2.20	0.65	0.634197
3760	dm3.chr2R	7,665,660 – 7,665,733	- - - intron="intron;ID=intron_FBgn0033652:1_FBgn0033652:3;Name=ths-in;Parent=FBtr0304622;parent_type=mRNA" - - - -	5150	7,665,660 – 7,665,733	+	7	78	74.36	-1.16	0.57	0.707553
3761	dm3.chr2R	7,672,907 – 7,672,998	- - - - - - - -	5151	7,672,907 – 7,672,998	+	7	97	72.31	-1.07	0.55	0.711891
3761	dm3.chr2R	7,672,907 – 7,672,998	- - - - - - - -	5152	7,672,907 – 7,672,998	-	7	97	72.31	-1.20	0.47	0.509513
3762	dm3.chr2R	7,683,295 – 7,683,377	- - - intron="intron;ID=intron_FBgn0033652:3_FBgn0033652:4;Name=ths-in;Parent=FBtr0088030,FBtr0304622,FBtr0304623;parent_type=mRNA" - - - -	5153	7,683,295 – 7,683,377	+	11	109	86.96	-2.13	0.88	0.974245
3762	dm3.chr2R	7,683,295 – 7,683,377		5154	7,683,295 – 7,683,377	-	11	109	86.96	-1.61	0.92	0.935223
3763	dm3.chr2R	7,684,349 – 7,684,422	- - - intron="intron;ID=intron_FBgn0033652:3_FBgn0033652:4;Name=ths-in;Parent=FBtr0088030,FBtr0304622,FBtr0304623;parent_type=mRNA" - - - -	5155	7,684,349 – 7,684,422	-	9	73	73.25	-1.18	0.57	0.888632
3764	dm3.chr2R	7,684,810 – 7,684,968	- - - intron="intron;ID=intron_FBgn0033652:3_FBgn0033652:4;Name=ths-in;Parent=FBtr0088030,FBtr0304622,FBtr0304623;parent_type=mRNA" - - - -	5156	7,684,810 – 7,684,900	+	7	97	74.35	-2.69	0.35	0.923150
				5157	7,684,810 – 7,684,900	-	7	97	74.35	-1.88	0.38	0.500000
				5158	7,684,865 – 7,684,968	-	7	117	69.93	-1.12	0.63	0.919724
3765	dm3.chr2R	7,689,152 – 7,689,210	- - - intron="intron;ID=intron_FBgn0033652:3_FBgn0033652:4;Name=ths-in;Parent=FBtr0088030,FBtr0304622,FBtr0304623;parent_type=mRNA" - - - -	5159	7,689,152 – 7,689,210	+	6	66	83.08	-2.34	0.56	0.780940
3766	dm3.chr2R	7,717,986 – 7,718,111	- - - intron="intron;ID=intron_CG8991:2_CG8991:3;Name=Sobp-in;Parent=FBtr0088064;parent_type=mRNA" - - - -	5160	7,717,986 – 7,718,111	+	6	153	69.67	-0.96	0.52	0.500000
3767	dm3.chr2R	7,724,586 – 7,724,729	- - - intron="intron;ID=intron_CG8991:2_CG8991:3;Name=Sobp-in;Parent=FBtr0088064;parent_type=mRNA" - - - -	5161	7,724,586 – 7,724,692	-	4	106	84.30	-1.67	0.79	0.710615
				5162	7,724,626 – 7,724,729	+	4	105	87.68	-1.72	0.76	0.511536
				5163	7,724,626 – 7,724,729	-	4	105	87.68	-2.24	0.73	0.812913
3768	dm3.chr2R	7,727,222 – 7,727,324	- - - - - - - -	5164	7,727,222 – 7,727,324	-	5	120	62.43	-0.67	0.54	0.698954
3769	dm3.chr2R	7,730,772 – 7,730,878	- - - intron="intron;ID=intron_FBgn0033656:2_FBgn0033656:1;Name=S2P-in;Parent=FBtr0088063;parent_type=mRNA" - - - -	5165	7,730,772 – 7,730,878	-	12	111	60.63	-0.80	0.39	0.798988
3770	dm3.chr2R	7,758,461 – 7,758,609	- - CDS="CDS;ID=CDS_FBgn0033661:7_554;Name=CG13185-cds;Parent=FBtr0113071;parent_type=mRNA" - - - - -	5166	7,758,461 – 7,758,554	-	8	99	80.27	-1.01	0.77	0.659024
3770	dm3.chr2R	7,758,461 – 7,758,609		5167	7,758,499 – 7,758,609	-	6	110	88.67	-2.41	0.74	0.915100
3771	dm3.chr2R	7,781,073 – 7,781,221	- - CDS="CDS;ID=CDS_FBgn0000556:3_611;Name=Ef1alpha48D-cds;Parent=FBtr0088035;parent_type=mRNA" - - - - -	5168	7,781,073 – 7,781,221	+	15	148	90.81	-1.89	0.83	0.865305
3772	dm3.chr2R	7,814,258 – 7,814,350	- - - - - - - -	5169	7,814,258 – 7,814,350	-	7	105	67.98	-1.37	0.63	0.985549
3773	dm3.chr2R	7,820,718 – 7,820,822	- - - - - - - -	5170	7,820,718 – 7,820,822	+	3	104	95.50	-1.38	1.00	0.896317
3774	dm3.chr2R	7,822,552 – 7,822,691	- - - - - - - -	5171	7,822,552 – 7,822,691	+	6	141	84.39	-1.79	0.70	0.739218
3775	dm3.chr2R	7,840,620 – 7,840,716	- - - intron="intron;ID=intron_CG13188:2_CG13188:3;Name=CG13188-in;Parent=FBtr0088039,FBtr0088040;parent_type=mRNA" - - - -	5172	7,840,620 – 7,840,716	-	6	103	86.03	-1.48	0.77	0.575809
3776	dm3.chr2R	7,846,421 – 7,846,520	- - - intron="intron;ID=intron_CG13188:3_CG13188:4;Name=CG13188-in;Parent=FBtr0088039,FBtr0088040;parent_type=mRNA" - - - -	5173	7,846,421 – 7,846,520	+	5	99	93.43	-1.92	0.88	0.863044
3777	dm3.chr2R	7,853,448 – 7,853,552	- - - intron="intron;ID=intron_CG13188:10_CG13188:11;Name=CG13188-in;Parent=FBtr0088040;parent_type=mRNA" - - - -	5174	7,853,448 – 7,853,552	-	4	116	85.61	-1.84	0.75	0.668542
3778	dm3.chr2R	7,875,256 – 7,875,351	- - - intron="intron;ID=intron_FBgn0033672:4_FBgn0033672:3;Name=rho-7-in;Parent=FBtr0088045;parent_type=mRNA" - - - -	5175	7,875,256 – 7,875,351	-	3	102	75.33	-1.56	0.64	0.515074
3779	dm3.chr2R	7,885,958 – 7,886,054	- - - - - - - -	5176	7,885,958 – 7,886,054	+	12	120	73.12	-1.43	0.48	0.630860
3780	dm3.chr2R	7,889,132 – 7,889,224	- - - - - - - -	5177	7,889,132 – 7,889,224	+	7	99	70.84	-1.05	0.60	0.779992
3781	dm3.chr2R	7,894,924 – 7,895,041	- - - intron="intron;ID=intron_CG8967:3_CG8967:4;Name=otk-in;Parent=FBtr0088028;parent_type=mRNA" - - - -	5178	7,894,924 – 7,895,041	-	7	121	81.38	-1.97	0.62	0.804010
3782	dm3.chr2R	7,897,041 – 7,897,148	- - - intron="intron;ID=intron_CG8967:3_CG8967:4;Name=otk-in;Parent=FBtr0088028;parent_type=mRNA" - - - -	5179	7,897,041 – 7,897,148	+	3	107	79.61	-2.17	0.68	0.860269
3782	dm3.chr2R	7,897,041 – 7,897,148		5180	7,897,041 – 7,897,148	-	3	107	79.61	-2.09	0.62	0.662473
3783	dm3.chr2R	7,900,164 – 7,900,265	- - - intron="intron;ID=intron_CG8967:3_CG8967:4;Name=otk-in;Parent=FBtr0088028;parent_type=mRNA" - - - -	5181	7,900,164 – 7,900,265	-	12	119	73.16	-1.12	0.47	0.546982
3784	dm3.chr2R	7,905,444 – 7,905,521	- - - intron="intron;ID=intron_CG8967:1_CG8967:2;Name=otk-in;Parent=FBtr0088028;parent_type=mRNA" - - - -	5182	7,905,444 – 7,905,521	+	12	79	76.54	-1.57	0.59	0.948444
3785	dm3.chr2R	7,921,379 – 7,921,475	- - - - - - - -	5183	7,921,379 – 7,921,475	+	7	98	58.78	-2.19	0.30	0.985151
3786	dm3.chr2R	7,934,874 – 7,934,988	- - - intron="intron;ID=intron_CG8357:1_CG8357:2;Name=Drep-1-in;Parent=FBtr0087978;parent_type=mRNA" - - - -	5184	7,934,874 – 7,934,988	+	6	116	74.42	-1.51	0.56	0.874131
3787	dm3.chr2R	7,936,587 – 7,936,725	- - - - - - - -	5185	7,936,587 – 7,936,693	+	11	116	68.96	-1.80	0.36	0.868376
				5186	7,936,587 – 7,936,693	-	11	116	68.96	-1.90	0.44	0.980189
				5187	7,936,621 – 7,936,725	+	12	120	68.79	-2.25	0.39	0.979259
				5188	7,936,621 – 7,936,725	-	12	120	68.79	-1.79	0.44	0.959020
3788	dm3.chr2R	7,937,584 – 7,937,681	- - - - - - - -	5189	7,937,584 – 7,937,681	-	8	101	66.59	-1.38	0.36	0.759933
3789	dm3.chr2R	7,937,755 – 7,937,825	- - - - - - - -	5190	7,937,755 – 7,937,825	-	4	70	87.44	-1.65	0.81	0.663467
3790	dm3.chr2R	7,946,675 – 7,946,785	- - - intron="intron;ID=intron_CG8364:6_CG8364:3;Name=Drep-3-in;Parent=FBtr0087980;parent_type=mRNA" - - - -	5191	7,946,675 – 7,946,785	+	6	110	81.03	-2.05	0.60	0.871937
3790	dm3.chr2R	7,946,675 – 7,946,785		5192	7,946,675 – 7,946,785	-	6	110	81.03	-2.26	0.45	0.597259
3791	dm3.chr2R	7,950,833 – 7,950,924	- - - - - - - -	5193	7,950,833 – 7,950,924	+	5	92	86.79	-2.29	0.75	0.908542
3792	dm3.chr2R	7,951,746 – 7,951,851	- - - - - - - -	5194	7,951,746 – 7,951,851	-	7	113	68.88	-1.40	0.40	0.712092
3793	dm3.chr2R	7,953,746 – 7,953,857	- - - intron="intron;ID=intron_CG8888:3_CG8888:4;Name=CG8888-in;Parent=FBtr0088022;parent_type=mRNA" - - - -	5195	7,953,746 – 7,953,857	+	3	120	67.60	-2.66	0.60	0.996345
3793	dm3.chr2R	7,953,746 – 7,953,857		5196	7,953,746 – 7,953,857	-	3	120	67.60	-2.08	0.56	0.964386
3794	dm3.chr2R	7,956,344 – 7,956,446	- - - intron="intron;ID=intron_CG8888:2_CG8888:3;Name=CG8888-in;Parent=FBtr0088022;parent_type=mRNA" - - - -	5197	7,956,344 – 7,956,446	+	5	102	85.99	-2.16	0.76	0.900664
3795	dm3.chr2R	7,957,863 – 7,958,021	- - - intron="intron;ID=intron_CG8888:2_CG8888:3;Name=CG8888-in;Parent=FBtr0088022;parent_type=mRNA" - - - -	5198	7,957,863 – 7,957,981	+	5	118	93.46	-2.38	0.71	0.600578
3795	dm3.chr2R	7,957,863 – 7,958,021		5199	7,957,903 – 7,958,021	+	5	118	95.41	-2.99	0.74	0.920089
3796	dm3.chr2R	7,958,678 – 7,958,783	- - - intron="intron;ID=intron_CG8888:2_CG8888:3;Name=CG8888-in;Parent=FBtr0088022;parent_type=mRNA" - - - -	5200	7,958,678 – 7,958,783	-	10	119	82.42	-1.94	0.57	0.705324
3797	dm3.chr2R	7,960,116 – 7,960,214	- - - intron="intron;ID=intron_CG8888:2_CG8888:3;Name=CG8888-in;Parent=FBtr0088022;parent_type=mRNA" - - - -	5201	7,960,116 – 7,960,214	+	5	107	80.79	-1.78	0.59	0.525983
3798	dm3.chr2R	7,963,422 – 7,963,542	- - - intron="intron;ID=intron_CG8888:2_CG8888:3;Name=CG8888-in;Parent=FBtr0088022;parent_type=mRNA" - - - -	5202	7,963,422 – 7,963,542	+	5	120	86.07	-2.16	0.71	0.855793
3799	dm3.chr2R	7,970,463 – 7,970,552	- - - - - - - -	5203	7,970,463 – 7,970,552	+	4	89	66.67	-3.20	0.51	0.999315
3799	dm3.chr2R	7,970,463 – 7,970,552	- - - - - - - -	5204	7,970,463 – 7,970,552	-	4	89	66.67	-2.72	0.63	0.999128
3800	dm3.chr2R	7,996,612 – 7,996,712	- - - intron="intron;ID=intron_CG30040:1_CG30040:2;Name=jeb-in;Parent=FBtr0088021;parent_type=mRNA" - - - -	5205	7,996,612 – 7,996,712	+	6	116	66.04	-0.82	0.51	0.693425
3801	dm3.chr2R	7,998,295 – 7,998,408	- - - intron="intron;ID=intron_CG30040:1_CG30040:2;Name=jeb-in;Parent=FBtr0088021;parent_type=mRNA" - - - -	5206	7,998,295 – 7,998,408	+	5	117	81.58	-1.58	0.74	0.698844
3802	dm3.chr2R	8,003,367 – 8,003,512	- - - intron="intron;ID=intron_CG30040:1_CG30040:2;Name=jeb-in;Parent=FBtr0088021;parent_type=mRNA" - - - -	5207	8,003,367 – 8,003,512	+	6	145	75.38	-2.20	0.40	0.704742
3803	dm3.chr2R	8,020,056 – 8,020,110	- - - - - - - -	5208	8,020,056 – 8,020,110	-	7	57	84.10	-1.96	0.70	0.874252
3804	dm3.chr2R	8,024,956 – 8,025,051	- - - - - - - -	5209	8,024,956 – 8,025,051	-	4	99	58.95	-1.42	0.47	0.947541
3805	dm3.chr2R	8,046,370 – 8,046,463	FBnoncoding="pre_miRNA;ID=FBtr0304446;Name=mir-988-RM;Parent=FBgn0262300;Alias=CR43007-RM;Dbxref=FlyBase_Annotation_IDs:CR43007-RM,miRBase:MI0005847" - - intron="intron;ID=intron_FBgn0033688:6_FBgn0033688:5;Name=Prp8-in;Parent=FBtr0088016;parent_type=mRNA" - - - "mirBase_v16=dsi-mir-988\|5.7e-46"	5210	8,046,370 – 8,046,463	-	13	114	75.06	-2.59	0.83	0.998582
3806	dm3.chr2R	8,053,965 – 8,054,018	- - - - - - - -	5211	8,053,965 – 8,054,018	+	6	62	79.29	-1.57	0.62	0.569167
3807	dm3.chr2R	8,055,252 – 8,055,365	- - CDS="CDS;ID=CDS_CG16747:3_517;Name=Oda-cds;Parent=FBtr0088014;parent_type=mRNA" - - - - -	5212	8,055,252 – 8,055,365	-	11	119	78.38	-2.36	0.38	0.775146
3808	dm3.chr2R	8,057,642 – 8,057,747	FBnoncoding="pre_miRNA;ID=FBtr0304375;Name=mir-281-2-RM;Parent=FBgn0262423;Alias=CR42975-RM;Dbxref=FlyBase_Annotation_IDs:CR42975-RM,miRBase:MI0000370" - - - "Rfam_10.0=RF00967;mir-281;AAJJ01001668.1/5737-5811\|3.4e-07" - - "mirBase_v16=dse-mir-281-2\|1.7e-46"	5213	8,057,642 – 8,057,747	+	15	110	78.20	-2.81	0.83	0.999031
3808	dm3.chr2R	8,057,642 – 8,057,747		5214	8,057,642 – 8,057,747	-	15	110	78.20	-4.18	0.87	0.999489
3809	dm3.chr2R	8,057,876 – 8,057,971	FBnoncoding="pre_miRNA;ID=FBtr0304285;Name=mir-281-1-RM;Parent=FBgn0262394;Alias=CR42931-RM;Dbxref=FlyBase_Annotation_IDs:CR42931-RM,miRBase:MI0000366" - - - - - - "mirBase_v16=dme-mir-281-1\|1.5e-46"	5215	8,057,876 – 8,057,971	+	14	117	81.59	-4.61	0.79	0.999646
3809	dm3.chr2R	8,057,876 – 8,057,971		5216	8,057,876 – 8,057,971	-	14	117	81.59	-6.02	0.85	0.998771
3810	dm3.chr2R	8,068,424 – 8,068,531	- - CDS="CDS;ID=CDS_FBgn0033692:1_606;Name=wash-cds;Parent=FBtr0087989;parent_type=mRNA" - - - - -	5217	8,068,424 – 8,068,531	+	12	119	73.32	-2.34	0.26	0.531906
3811	dm3.chr2R	8,088,833 – 8,088,924	- - - - - - - -	5218	8,088,833 – 8,088,924	-	5	92	79.27	-2.05	0.57	0.810187
3812	dm3.chr2R	8,091,616 – 8,091,712	- - - - - - - -	5219	8,091,616 – 8,091,712	+	7	104	82.12	-2.09	0.70	0.917975
3812	dm3.chr2R	8,091,616 – 8,091,712	- - - - - - - -	5220	8,091,616 – 8,091,712	-	7	104	82.12	-1.52	0.68	0.515227
3813	dm3.chr2R	8,093,526 – 8,093,705	- - - - - - - -	5221	8,093,526 – 8,093,705	+	5	179	79.99	-2.26	0.48	0.643180
3814	dm3.chr2R	8,110,669 – 8,110,764	- - - - - - - -	5222	8,110,669 – 8,110,764	+	11	113	77.17	-1.71	0.65	0.939975
3814	dm3.chr2R	8,110,669 – 8,110,764	- - - - - - - -	5223	8,110,669 – 8,110,764	-	11	113	77.17	-2.16	0.58	0.970165
3815	dm3.chr2R	8,112,249 – 8,112,353	- - CDS="CDS;ID=CDS_FBgn0033702:1_559;Name=CG8854-cds;Parent=FBtr0114562;parent_type=mRNA" - - - - -	5224	8,112,249 – 8,112,353	-	13	111	75.35	-0.95	0.56	0.656472
3816	dm3.chr2R	8,112,418 – 8,112,554	- - CDS="CDS;ID=CDS_FBgn0033702:1_559;Name=CG8854-cds;Parent=FBtr0114562;parent_type=mRNA" - - - - -	5225	8,112,418 – 8,112,523	+	12	118	79.36	-1.99	0.55	0.907758
				5226	8,112,418 – 8,112,523	-	12	118	79.36	-1.58	0.55	0.669690
				5227	8,112,443 – 8,112,554	+	12	120	85.82	-2.34	0.61	0.874348
3817	dm3.chr2R	8,130,371 – 8,130,506	- - - - - - - -	5228	8,130,371 – 8,130,487	+	6	119	74.55	-1.81	0.53	0.870605
				5229	8,130,371 – 8,130,487	-	6	119	74.55	-1.19	0.60	0.632320
				5230	8,130,411 – 8,130,506	+	5	125	68.33	-2.03	0.48	0.934678
				5231	8,130,411 – 8,130,506	-	5	125	68.33	-1.89	0.48	0.894676
3818	dm3.chr2R	8,135,530 – 8,135,668	- - - - - - - -	5232	8,135,530 – 8,135,637	-	5	107	82.39	-1.20	0.98	0.926419
3818	dm3.chr2R	8,135,530 – 8,135,668	- - - - - - - -	5233	8,135,570 – 8,135,668	-	7	111	83.52	-1.09	0.92	0.819674
3819	dm3.chr2R	8,138,353 – 8,138,472	- - - - - - - -	5234	8,138,353 – 8,138,472	+	5	119	87.05	-2.37	0.58	0.559430
3819	dm3.chr2R	8,138,353 – 8,138,472	- - - - - - - -	5235	8,138,353 – 8,138,472	-	5	119	87.05	-2.75	0.56	0.803002
3820	dm3.chr2R	8,150,498 – 8,150,671	- - - intron="intron;ID=intron_FBgn0000253:2_FBgn0000253:4;Name=Cam-in;Parent=FBtr0088001,FBtr0304963;parent_type=mRNA" - - - -	5236	8,150,498 – 8,150,606	+	7	109	72.01	-1.02	0.58	0.594458
				5237	8,150,566 – 8,150,671	+	3	105	96.83	-1.30	0.98	0.790263
				5238	8,150,566 – 8,150,671	-	3	105	96.83	-2.56	0.97	0.988371
3821	dm3.chr2R	8,151,584 – 8,151,688	- - - intron="intron;ID=intron_FBgn0000253:2_FBgn0000253:4;Name=Cam-in;Parent=FBtr0088001,FBtr0304963;parent_type=mRNA" - - - -	5239	8,151,584 – 8,151,688	-	6	113	65.03	-1.29	0.41	0.638305
3822	dm3.chr2R	8,154,387 – 8,154,496	- - - intron="intron;ID=intron_FBgn0000253:4_FBgn0000253:5;Name=Cam-in;Parent=FBtr0088001,FBtr0088002,FBtr0304963,FBtr0304964;parent_type=mRNA" - - - -	5240	8,154,387 – 8,154,496	+	3	111	92.15	-2.03	0.78	0.569386
3823	dm3.chr2R	8,158,536 – 8,158,596	- - - intron="intron;ID=intron_FBgn0000253:5_FBgn0000253:7;Name=Cam-in;Parent=FBtr0304963,FBtr0304964;parent_type=mRNA" - - - -	5241	8,158,536 – 8,158,596	+	3	62	95.70	-1.59	0.97	0.890637
3824	dm3.chr2R	8,170,643 – 8,170,772	- - - intron="intron;ID=intron_FBgn0261611:1_FBgn0261611:4;Name=CG42700-in;Parent=FBtr0302922;parent_type=mRNA" - - - -	5242	8,170,643 – 8,170,737	+	7	119	66.38	-1.21	0.44	0.561176
3824	dm3.chr2R	8,170,643 – 8,170,772		5243	8,170,678 – 8,170,772	+	7	120	67.21	-1.04	0.54	0.740382
3825	dm3.chr2R	8,171,312 – 8,171,405	- - - intron="intron;ID=intron_FBgn0261611:1_FBgn0261611:4;Name=CG42700-in;Parent=FBtr0302922;parent_type=mRNA" - - - -	5244	8,171,312 – 8,171,405	-	6	107	83.19	-1.58	0.87	0.912414
3826	dm3.chr2R	8,175,497 – 8,175,611	- - - intron="intron;ID=intron_FBgn0261611:1_FBgn0261611:4;Name=CG42700-in;Parent=FBtr0302922;parent_type=mRNA" - - - -	5245	8,175,497 – 8,175,611	+	5	114	86.33	-1.65	0.80	0.720502
3827	dm3.chr2R	8,176,784 – 8,176,883	- - - intron="intron;ID=intron_FBgn0261611:1_FBgn0261611:4;Name=CG42700-in;Parent=FBtr0302922;parent_type=mRNA" - - - -	5246	8,176,784 – 8,176,883	+	6	107	70.52	-1.09	0.49	0.552721
3827	dm3.chr2R	8,176,784 – 8,176,883		5247	8,176,784 – 8,176,883	-	6	107	70.52	-1.94	0.40	0.858693
3828	dm3.chr2R	8,178,553 – 8,178,660	- - - intron="intron;ID=intron_FBgn0261611:1_FBgn0261611:4;Name=CG42700-in;Parent=FBtr0302922;parent_type=mRNA" - - - -	5248	8,178,553 – 8,178,660	-	7	108	67.51	-1.65	0.33	0.500000
3829	dm3.chr2R	8,180,318 – 8,180,399	- - - intron="intron;ID=intron_FBgn0261611:1_FBgn0261611:4;Name=CG42700-in;Parent=FBtr0302922;parent_type=mRNA" - - - -	5249	8,180,318 – 8,180,399	-	5	81	82.09	-1.28	0.86	0.788085
3830	dm3.chr2R	8,200,914 – 8,201,048	- - CDS="CDS;ID=CDS_FBgn0050203:6_574;Name=CG30203-cds;Parent=FBtr0273303;parent_type=mRNA" - - - - -	5250	8,200,914 – 8,201,048	-	6	159	70.36	-2.64	0.44	0.995115
3831	dm3.chr2R	8,221,417 – 8,221,525	FBnoncoding="tRNA;ID=FBtr0087963;Name=tRNA:CR30249-RA;Parent=FBgn0050249;Alias=CR30249-RA;Dbxref=FlyBase_Annotation_IDs:CR30249-RA;score_text=Weakly" tRNAscann="His_chr2R_trna80" - - "Rfam_10.0=RF00005;tRNA;AANI01014800.1/19824-19895\|5.0e-34" - - -	5251	8,221,417 – 8,221,525	+	13	115	84.69	-1.31	0.86	0.888489
3832	dm3.chr2R	8,221,739 – 8,221,809	FBnoncoding="tRNA;ID=FBtr0087962;Name=tRNA:CR30250-RA;Parent=FBgn0050250;Alias=CR30250-RA;Dbxref=FlyBase_Annotation_IDs:CR30250-RA;score_text=Weakly" tRNAscann="His_chr2R_trna79" - - "Rfam_10.0=RF00005;tRNA;AANI01014800.1/19824-19895\|4.5e-33" - - -	5252	8,221,739 – 8,221,809	+	14	73	96.40	-2.39	0.89	0.956252
3832	dm3.chr2R	8,221,739 – 8,221,809		5253	8,221,739 – 8,221,809	-	14	73	96.40	-1.13	0.98	0.756562
3833	dm3.chr2R	8,223,920 – 8,224,000	FBnoncoding="tRNA;ID=FBtr0087900;Name=tRNA:H:48F-RA;Parent=FBgn0011878;Dbxref=FlyBase_Annotation_IDs:CR30252-RA;score_text=Weakly" tRNAscann="His_chr2R_trna17" - - "Rfam_10.0=RF00005;tRNA;AANI01014800.1/19824-19895\|3.4e-34" - - -	5254	8,223,920 – 8,224,000	+	14	106	91.30	-1.98	0.92	0.959749
3833	dm3.chr2R	8,223,920 – 8,224,000		5255	8,223,920 – 8,224,000	-	14	106	91.30	-3.23	0.91	0.997135
3834	dm3.chr2R	8,224,225 – 8,224,314	- tRNAscann="Undet_chr2R_trna18" - - "Rfam_10.0=RF00005;tRNA;AE013599.4/8224238-8224309\|3.9e-34" - - -	5256	8,224,225 – 8,224,314	+	13	89	90.17	-1.38	0.93	0.883567
3834	dm3.chr2R	8,224,225 – 8,224,314		5257	8,224,225 – 8,224,314	-	13	89	90.17	-2.05	0.94	0.982290
3835	dm3.chr2R	8,225,243 – 8,225,353	- - - - - - - -	5258	8,225,243 – 8,225,353	+	5	119	78.44	-1.34	0.66	0.536405
3835	dm3.chr2R	8,225,243 – 8,225,353	- - - - - - - -	5259	8,225,243 – 8,225,353	-	5	119	78.44	-1.97	0.72	0.956099
3836	dm3.chr2R	8,230,050 – 8,230,148	- - - intron="intron;ID=intron_CG8839:8_CG8839:2;Name=CG8839-in;Parent=FBtr0087960;parent_type=mRNA" - - - -	5260	8,230,050 – 8,230,148	+	5	98	78.60	-1.15	0.81	0.681806
3837	dm3.chr2R	8,230,570 – 8,230,645	- - - intron="intron;ID=intron_CG8839:8_CG8839:2;Name=CG8839-in;Parent=FBtr0087960;parent_type=mRNA" - - - -	5261	8,230,570 – 8,230,645	+	5	75	84.67	-2.05	0.60	0.530436
3838	dm3.chr2R	8,269,013 – 8,269,119	- - - - - - - -	5262	8,269,013 – 8,269,118	+	7	120	74.25	-3.00	0.45	0.989665
				5263	8,269,013 – 8,269,118	-	7	120	74.25	-1.67	0.56	0.822845
				5264	8,269,013 – 8,269,119	+	7	120	74.19	-2.75	0.45	0.978305
				5265	8,269,013 – 8,269,119	-	7	120	74.19	-1.59	0.55	0.762076
3839	dm3.chr2R	8,275,762 – 8,275,865	- - - - - - - -	5266	8,275,762 – 8,275,865	+	12	115	65.08	-0.85	0.38	0.514191
3840	dm3.chr2R	8,280,587 – 8,280,679	- - - - - - - -	5267	8,280,587 – 8,280,679	+	7	111	61.73	-2.09	0.23	0.636224
3841	dm3.chr2R	8,287,373 – 8,287,502	- - - - - - - -	5268	8,287,373 – 8,287,502	+	7	139	66.98	-1.33	0.50	0.953873
3842	dm3.chr2R	8,298,273 – 8,298,377	- - - - - - - -	5269	8,298,273 – 8,298,377	-	5	110	79.79	-2.53	0.40	0.564759
3843	dm3.chr2R	8,303,024 – 8,303,123	- - - - - - - -	5270	8,303,024 – 8,303,123	+	5	99	92.87	-2.06	0.86	0.881072
3844	dm3.chr2R	8,309,796 – 8,309,891	- - - intron="intron;ID=intron_FBgn0033733:7_FBgn0033733:6;Name=CG8834-in;Parent=FBtr0087954,FBtr0113073;parent_type=mRNA" - - - -	5271	8,309,796 – 8,309,891	-	11	109	60.72	-0.32	0.57	0.947975
3845	dm3.chr2R	8,322,866 – 8,322,979	- - - - - - - -	5272	8,322,866 – 8,322,979	-	7	116	77.79	-1.79	0.70	0.969500
3846	dm3.chr2R	8,325,003 – 8,325,102	- - - intron="intron;ID=intron_FBgn0033739:1_FBgn0033739:3;Name=Dyb-in;Parent=FBtr0087930,FBtr0305077;parent_type=mRNA" - - - -	5273	8,325,003 – 8,325,102	+	6	103	79.66	-1.14	0.69	0.500000
3847	dm3.chr2R	8,326,012 – 8,326,157	- - - intron="intron;ID=intron_FBgn0033739:2_FBgn0033739:3;Name=Dyb-in;Parent=FBtr0087929,FBtr0100298,FBtr0113074,FBtr0305076;parent_type=mRNA" - - - -	5274	8,326,012 – 8,326,157	-	6	149	73.53	-1.54	0.60	0.929401
3848	dm3.chr2R	8,329,680 – 8,329,777	- - - - - - - -	5275	8,329,680 – 8,329,777	+	3	101	86.00	-1.58	0.82	0.620358
3849	dm3.chr2R	8,334,098 – 8,334,162	- - - - - - - -	5276	8,334,098 – 8,334,162	-	6	64	94.06	-1.81	0.92	0.899462
3850	dm3.chr2R	8,334,353 – 8,334,517	- - - - - - - -	5277	8,334,353 – 8,334,517	+	8	183	68.27	-2.39	0.23	0.547864
3851	dm3.chr2R	8,334,760 – 8,334,880	- - - - - - - -	5278	8,334,760 – 8,334,880	+	4	120	64.51	-1.19	0.43	0.576236
3852	dm3.chr2R	8,337,649 – 8,337,754	- - CDS="CDS;ID=CDS_FBgn0033739:7_578;Name=Dyb-cds;Parent=FBtr0113074;parent_type=mRNA" - - - - -	5279	8,337,649 – 8,337,754	+	10	117	74.21	-0.78	0.69	0.667201
3853	dm3.chr2R	8,344,332 – 8,344,433	- - - intron="intron;ID=intron_CG12369:3_CG12369:4;Name=Lac-in;Parent=FBtr0087933;parent_type=mRNA" - - - -	5280	8,344,332 – 8,344,433	-	7	115	66.00	-1.36	0.39	0.564328
3854	dm3.chr2R	8,346,520 – 8,346,592	- - - intron="intron;ID=intron_CG12369:3_CG12369:4;Name=Lac-in;Parent=FBtr0087933;parent_type=mRNA" - - - -	5281	8,346,520 – 8,346,592	+	5	82	79.66	-2.46	0.54	0.899456
3854	dm3.chr2R	8,346,520 – 8,346,592		5282	8,346,520 – 8,346,592	-	5	82	79.66	-1.97	0.58	0.715805
3855	dm3.chr2R	8,364,508 – 8,364,611	- - - intron="intron;ID=intron_FBgn0033744:1_FBgn0033744:2;Name=CG12370-in;Parent=FBtr0087936,FBtr0113075;parent_type=mRNA" - - - -	5283	8,364,508 – 8,364,611	-	8	113	80.04	-2.14	0.50	0.704784
3856	dm3.chr2R	8,366,912 – 8,367,014	- - - intron="intron;ID=intron_FBgn0033744:1_FBgn0033744:2;Name=CG12370-in;Parent=FBtr0087936,FBtr0113075;parent_type=mRNA" - - - -	5284	8,366,912 – 8,367,014	-	5	102	93.92	-1.46	0.91	0.695970
3857	dm3.chr2R	8,379,344 – 8,379,456	- - - - - - - -	5285	8,379,344 – 8,379,456	+	6	113	80.35	-1.72	0.76	0.936036
3858	dm3.chr2R	8,381,298 – 8,381,402	- - - - - - - -	5286	8,381,298 – 8,381,402	+	6	105	61.01	-1.73	0.31	0.862826
3859	dm3.chr2R	8,383,812 – 8,383,905	- - - intron="intron;ID=intron_FBgn0050044:1_FBgn0050044:2;Name=s-cup-in;Parent=FBtr0087938,FBtr0113358;parent_type=mRNA" - - - -	5287	8,383,812 – 8,383,905	+	6	100	80.77	-1.57	0.72	0.820243
3860	dm3.chr2R	8,383,950 – 8,384,048	- - - intron="intron;ID=intron_FBgn0050044:1_FBgn0050044:2;Name=s-cup-in;Parent=FBtr0087938,FBtr0113358;parent_type=mRNA" - - - -	5288	8,383,950 – 8,384,048	-	5	113	76.31	-1.31	0.63	0.534499
3861	dm3.chr2R	8,402,322 – 8,402,416	- - - - - - - -	5289	8,402,322 – 8,402,416	+	5	94	80.71	-2.02	0.61	0.795177
3861	dm3.chr2R	8,402,322 – 8,402,416	- - - - - - - -	5290	8,402,322 – 8,402,416	-	5	94	80.71	-1.72	0.64	0.650131
3862	dm3.chr2R	8,406,610 – 8,406,660	- - - - - - - -	5291	8,406,610 – 8,406,660	+	3	56	86.31	-2.12	0.78	0.852777
3863	dm3.chr2R	8,412,874 – 8,412,990	- - - - - - - -	5292	8,412,874 – 8,412,988	+	6	119	77.62	-2.26	0.41	0.601341
				5293	8,412,874 – 8,412,988	-	6	119	77.62	-2.85	0.56	0.991821
				5294	8,412,876 – 8,412,990	+	6	120	78.47	-2.36	0.44	0.733186
				5295	8,412,876 – 8,412,990	-	6	120	78.47	-2.87	0.64	0.995243
3864	dm3.chr2R	8,427,066 – 8,427,168	- - - intron="intron;ID=intron_CG8581:1_CG8581:2;Name=fra-in;Parent=FBtr0087821,FBtr0087822;parent_type=mRNA" - - - -	5296	8,427,066 – 8,427,168	-	3	102	73.44	-2.71	0.58	0.983545
3865	dm3.chr2R	8,427,500 – 8,427,597	- - - intron="intron;ID=intron_CG8581:1_CG8581:2;Name=fra-in;Parent=FBtr0087821,FBtr0087822;parent_type=mRNA" - - - -	5297	8,427,500 – 8,427,597	-	5	109	88.42	-1.66	0.85	0.786763
3866	dm3.chr2R	8,438,815 – 8,439,020	- - - - - - - -	5298	8,438,815 – 8,438,912	+	5	113	79.17	-1.93	0.59	0.682801
3866	dm3.chr2R	8,438,815 – 8,439,020	- - - - - - - -	5299	8,438,912 – 8,439,020	-	6	113	84.38	-1.72	0.73	0.748417
3867	dm3.chr2R	8,440,712 – 8,440,829	- - - - - - - -	5300	8,440,712 – 8,440,829	+	5	117	66.73	-1.21	0.46	0.564360
3868	dm3.chr2R	8,443,519 – 8,443,570	- - - - - - - -	5301	8,443,519 – 8,443,570	+	4	51	100.00	-1.53	1.00	0.894698
3868	dm3.chr2R	8,443,519 – 8,443,570	- - - - - - - -	5302	8,443,519 – 8,443,570	-	4	51	100.00	-0.88	1.00	0.541777
3869	dm3.chr2R	8,488,890 – 8,489,001	- - - intron="intron;ID=intron_CG8604:1_CG8604:2;Name=Amph-in;Parent=FBtr0087828;parent_type=mRNA" - - - -	5303	8,488,890 – 8,489,001	-	5	115	88.56	-2.04	0.76	0.770448
3870	dm3.chr2R	8,498,404 – 8,498,471	- - - intron="intron;ID=intron_CG8604:9_CG8604:10;Name=Amph-in;Parent=FBtr0087828;parent_type=mRNA" - - - -	5304	8,498,404 – 8,498,471	+	7	74	79.16	-2.09	0.50	0.745599
3870	dm3.chr2R	8,498,404 – 8,498,471		5305	8,498,404 – 8,498,471	-	7	74	79.16	-1.38	0.75	0.848316
3871	dm3.chr2R	8,499,892 – 8,500,039	- - - - - - - -	5306	8,499,892 – 8,499,996	+	4	105	77.94	-1.80	0.68	0.864998
				5307	8,499,892 – 8,499,996	-	4	105	77.94	-2.44	0.69	0.983306
				5308	8,499,928 – 8,500,035	-	4	108	78.14	-3.13	0.74	0.997952
				5309	8,499,933 – 8,500,039	+	4	107	77.78	-1.39	0.73	0.740305
				5310	8,499,933 – 8,500,039	-	4	107	77.78	-3.08	0.70	0.997389
3872	dm3.chr2R	8,552,471 – 8,552,598	- - CDS="CDS;ID=CDS_FBgn0033764:7_582;Name=nemy-cds;Parent=FBtr0302151,FBtr0087870;parent_type=mRNA" - - - - -	5311	8,552,471 – 8,552,575	+	11	113	73.22	-0.99	0.59	0.795900
3872	dm3.chr2R	8,552,471 – 8,552,598		5312	8,552,503 – 8,552,598	+	9	105	70.58	-0.93	0.49	0.553481
3873	dm3.chr2R	8,588,435 – 8,588,542	- - - - - - - -	5313	8,588,435 – 8,588,542	-	8	112	75.47	-2.75	0.30	0.754434
3874	dm3.chr2R	8,605,724 – 8,605,794	- - - intron="intron;ID=intron_FBgn0261545:1_FBgn0261545:2;Name=CG42663-in;Parent=FBtr0302644,FBtr0302645;parent_type=mRNA" - - - -	5314	8,605,724 – 8,605,794	+	7	79	70.57	-1.99	0.38	0.856709
3875	dm3.chr2R	8,609,196 – 8,609,296	- - - intron="intron;ID=intron_FBgn0261545:1_FBgn0261545:2;Name=CG42663-in;Parent=FBtr0302644,FBtr0302645;parent_type=mRNA" - - - -	5315	8,609,196 – 8,609,296	+	4	100	79.00	-2.05	0.66	0.909477
3876	dm3.chr2R	8,615,715 – 8,615,807	- - - intron="intron;ID=intron_FBgn0261545:2_FBgn0261545:3;Name=CG42663-in;Parent=FBtr0302644,FBtr0302645;parent_type=mRNA" - - - -	5316	8,615,715 – 8,615,807	+	8	102	55.47	-1.08	0.31	0.722070
3877	dm3.chr2R	8,616,982 – 8,617,063	- - - intron="intron;ID=intron_FBgn0261545:2_FBgn0261545:3;Name=CG42663-in;Parent=FBtr0302644,FBtr0302645;parent_type=mRNA" - - - -	5317	8,616,982 – 8,617,063	+	7	92	58.76	-1.84	0.22	0.648085
3877	dm3.chr2R	8,616,982 – 8,617,063		5318	8,616,982 – 8,617,063	-	7	92	58.76	-1.63	0.38	0.976965
3878	dm3.chr2R	8,618,917 – 8,619,073	- - - intron="intron;ID=intron_FBgn0261545:2_FBgn0261545:3;Name=CG42663-in;Parent=FBtr0302644,FBtr0302645;parent_type=mRNA" - - - -	5319	8,618,917 – 8,619,073	+	7	168	66.04	-0.96	0.47	0.619846
3879	dm3.chr2R	8,622,138 – 8,622,240	- - - intron="intron;ID=intron_FBgn0261545:2_FBgn0261545:3;Name=CG42663-in;Parent=FBtr0302644,FBtr0302645;parent_type=mRNA" - - - -	5320	8,622,138 – 8,622,240	-	6	116	77.13	-1.99	0.44	0.542356
3880	dm3.chr2R	8,628,712 – 8,628,804	- - - intron="intron;ID=intron_FBgn0261545:4_FBgn0261545:5;Name=CG42663-in;Parent=FBtr0302645;parent_type=mRNA" - - - -	5321	8,628,712 – 8,628,804	+	7	101	77.30	-2.16	0.51	0.852638
3881	dm3.chr2R	8,631,960 – 8,632,051	- - - intron="intron;ID=intron_FBgn0261545:4_FBgn0261545:5;Name=CG42663-in;Parent=FBtr0302645;parent_type=mRNA" - - - -	5322	8,631,960 – 8,632,051	+	7	109	70.97	-1.00	0.55	0.600608
3882	dm3.chr2R	8,641,249 – 8,641,360	- - - - - - - -	5323	8,641,249 – 8,641,360	-	11	111	68.28	-0.64	0.45	0.500000
3883	dm3.chr2R	8,647,946 – 8,648,044	- - CDS="CDS;ID=CDS_CG8759:4_524;Name=Nacalpha-cds;Parent=FBtr0087859;parent_type=mRNA" - - - - -	5324	8,647,946 – 8,648,044	+	14	112	63.30	-0.84	0.36	0.530119
3884	dm3.chr2R	8,656,569 – 8,656,659	- - - - - - - -	5325	8,656,569 – 8,656,659	-	9	110	67.28	-0.95	0.55	0.830614
3885	dm3.chr2R	8,658,361 – 8,658,477	- - - - - - - -	5326	8,658,361 – 8,658,477	+	3	117	73.39	-1.60	0.67	0.678827
3886	dm3.chr2R	8,669,972 – 8,670,070	- - - intron="intron;ID=intron_CG17579:1_CG17579:2;Name=sca-in;Parent=FBtr0087855,FBtr0087856;parent_type=mRNA" - - - -	5327	8,669,972 – 8,670,070	-	5	98	81.74	-2.52	0.55	0.852837
3887	dm3.chr2R	8,670,236 – 8,670,290	- - - intron="intron;ID=intron_CG17579:1_CG17579:2;Name=sca-in;Parent=FBtr0087855,FBtr0087856;parent_type=mRNA" - - - -	5328	8,670,236 – 8,670,290	+	5	54	96.67	-1.96	1.00	0.975376
3887	dm3.chr2R	8,670,236 – 8,670,290		5329	8,670,236 – 8,670,290	-	5	54	96.67	-1.36	0.94	0.665656
3888	dm3.chr2R	8,679,108 – 8,679,202	- - - intron="intron;ID=intron_CG17579:2_CG17579:3;Name=sca-in;Parent=FBtr0087855,FBtr0087856;parent_type=mRNA" - - - -	5330	8,679,108 – 8,679,202	+	4	94	56.23	-1.00	0.51	0.956257
3888	dm3.chr2R	8,679,108 – 8,679,202		5331	8,679,108 – 8,679,202	-	4	94	56.23	-1.07	0.45	0.908451
3889	dm3.chr2R	8,691,606 – 8,691,666	- - - - - - - -	5332	8,691,606 – 8,691,666	-	12	77	70.27	-1.09	0.68	0.979029
3890	dm3.chr2R	8,706,570 – 8,706,632	- - - - - - - -	5333	8,706,570 – 8,706,632	-	5	63	84.13	-2.27	0.53	0.557806
3891	dm3.chr2R	8,707,420 – 8,707,522	- - - - - - - -	5334	8,707,420 – 8,707,522	+	4	103	63.81	-1.41	0.53	0.900005
3891	dm3.chr2R	8,707,420 – 8,707,522	- - - - - - - -	5335	8,707,420 – 8,707,522	-	4	103	63.81	-1.31	0.55	0.893000
3892	dm3.chr2R	8,745,512 – 8,745,602	- - - intron="intron;ID=intron_FBgn0033777:9_FBgn0033777:8;Name=CG17574-in;Parent=FBtr0113078;parent_type=mRNA" - - - -	5336	8,745,512 – 8,745,602	-	3	91	85.44	-1.46	0.88	0.753108
3893	dm3.chr2R	8,748,472 – 8,748,568	- - - intron="intron;ID=intron_FBgn0033777:10_FBgn0033777:9;Name=CG17574-in;Parent=FBtr0113078;parent_type=mRNA" - - - -	5337	8,748,472 – 8,748,568	-	4	98	64.91	-0.81	0.61	0.778975
3894	dm3.chr2R	8,758,698 – 8,758,792	- - - - - - - -	5338	8,758,698 – 8,758,792	-	5	94	98.94	-1.13	0.98	0.640591
3895	dm3.chr2R	8,766,534 – 8,766,597	- - CDS="CDS;ID=CDS_CG3798:5_509;Name=Nmda1-cds;Parent=FBtr0089875,FBtr0089877,FBtr0089873;parent_type=mRNA" - - - - -	5339	8,766,534 – 8,766,597	+	12	68	76.86	-0.90	0.76	0.847133
3896	dm3.chr2R	8,781,529 – 8,781,654	- - - intron="intron;ID=intron_CG3830:4_CG3830:5;Name=vg-in;Parent=FBtr0087785;parent_type=mRNA" - - - -	5340	8,781,529 – 8,781,654	-	12	131	94.08	-1.77	0.91	0.888048
3897	dm3.chr2R	8,783,334 – 8,783,432	- - - intron="intron;ID=intron_CG3830:4_CG3830:5;Name=vg-in;Parent=FBtr0087785;parent_type=mRNA" - - - -	5341	8,783,334 – 8,783,432	-	11	116	73.64	-2.47	0.56	0.996149
3898	dm3.chr2R	8,784,193 – 8,784,285	- - - intron="intron;ID=intron_CG3830:4_CG3830:5;Name=vg-in;Parent=FBtr0087785;parent_type=mRNA" - - - -	5342	8,784,193 – 8,784,285	+	9	93	83.96	-1.02	0.82	0.541291
3899	dm3.chr2R	8,795,770 – 8,795,875	- - - - - - - -	5343	8,795,770 – 8,795,875	-	6	116	72.28	-1.50	0.57	0.904068
3900	dm3.chr2R	8,796,246 – 8,796,343	- - - - - - - -	5344	8,796,246 – 8,796,343	+	6	97	74.49	-1.82	0.66	0.972743
3900	dm3.chr2R	8,796,246 – 8,796,343	- - - - - - - -	5345	8,796,246 – 8,796,343	-	6	97	74.49	-1.30	0.54	0.534418
3901	dm3.chr2R	8,798,153 – 8,798,215	- - - - - - - -	5346	8,798,153 – 8,798,215	+	5	62	95.16	-0.43	1.06	0.690781
3902	dm3.chr2R	8,801,912 – 8,801,962	- - - - - - - -	5347	8,801,912 – 8,801,962	-	5	50	98.40	-2.85	0.98	0.993711
3903	dm3.chr2R	8,806,537 – 8,806,639	- - CDS="CDS;ID=CDS_CG3845:2_554;Name=NAT1-cds;Parent=FBtr0100672;parent_type=mRNA" - - - - -	5348	8,806,537 – 8,806,639	+	13	112	76.52	-2.69	0.73	0.999028
3903	dm3.chr2R	8,806,537 – 8,806,639		5349	8,806,537 – 8,806,639	-	13	112	76.52	-1.10	0.58	0.703913
3904	dm3.chr2R	8,808,733 – 8,808,849	- - CDS="CDS;ID=CDS_CG3845:3_554;Name=NAT1-cds;Parent=FBtr0100672;parent_type=mRNA" - - - - -	5350	8,808,733 – 8,808,849	+	13	119	82.96	-2.29	0.44	0.647818
3904	dm3.chr2R	8,808,733 – 8,808,849		5351	8,808,733 – 8,808,849	-	13	119	82.96	-3.61	0.60	0.998878
3905	dm3.chr2R	8,812,741 – 8,812,824	- - - - - - - -	5352	8,812,741 – 8,812,824	-	4	96	76.83	-2.02	0.61	0.906477
3906	dm3.chr2R	8,848,472 – 8,848,584	- - - - - - - -	5353	8,848,472 – 8,848,584	+	6	113	72.25	-1.38	0.46	0.587697
3907	dm3.chr2R	8,894,181 – 8,894,297	- - - - - - - -	5354	8,894,181 – 8,894,280	+	11	119	77.84	-2.37	0.65	0.985942
3907	dm3.chr2R	8,894,181 – 8,894,297	- - - - - - - -	5355	8,894,204 – 8,894,297	+	11	116	78.28	-1.02	0.83	0.800363
3908	dm3.chr2R	8,897,678 – 8,897,788	- - - - - - - -	5356	8,897,678 – 8,897,788	+	5	120	87.02	-2.36	0.73	0.907244
3909	dm3.chr2R	8,905,884 – 8,905,991	- - - - - - - -	5357	8,905,884 – 8,905,991	+	8	110	74.01	-2.96	0.47	0.996773
3909	dm3.chr2R	8,905,884 – 8,905,991	- - - - - - - -	5358	8,905,884 – 8,905,991	-	8	110	74.01	-2.90	0.45	0.994835
3910	dm3.chr2R	8,916,264 – 8,916,354	- - - - - - - -	5359	8,916,264 – 8,916,354	+	5	90	93.45	-2.05	0.98	0.979855
3911	dm3.chr2R	8,929,084 – 8,929,203	- - - - - - - -	5360	8,929,084 – 8,929,203	-	6	120	74.04	-2.32	0.47	0.964815
3912	dm3.chr2R	8,932,563 – 8,932,613	- - - - - - - -	5361	8,932,563 – 8,932,613	+	8	50	93.29	-2.36	0.77	0.822394
3913	dm3.chr2R	8,937,419 – 8,937,520	- - - - - - - -	5362	8,937,419 – 8,937,520	-	3	101	94.68	-1.50	0.97	0.873696
3914	dm3.chr2R	8,940,076 – 8,940,172	- - - - - - - -	5363	8,940,076 – 8,940,172	-	5	105	65.11	-0.95	0.48	0.546857
3915	dm3.chr2R	8,944,055 – 8,944,145	- - - - - - - -	5364	8,944,055 – 8,944,145	-	7	95	76.89	-1.52	0.66	0.784994
3916	dm3.chr2R	8,945,110 – 8,945,270	- - - - - - - -	5365	8,945,110 – 8,945,218	-	5	120	75.53	-1.29	0.64	0.629326
				5366	8,945,145 – 8,945,258	-	5	121	78.80	-1.30	0.71	0.687374
				5367	8,945,150 – 8,945,270	-	5	120	82.50	-1.42	0.85	0.861175
3917	dm3.chr2R	8,953,207 – 8,953,299	- - - intron="intron;ID=intron_FBgn0033791:5_FBgn0033791:4;Name=Drl-2-in;Parent=FBtr0087794;parent_type=mRNA" - - - -	5368	8,953,207 – 8,953,299	-	5	100	64.24	-2.78	0.35	0.993519
3918	dm3.chr2R	8,960,057 – 8,960,151	- - CDS="CDS;ID=CDS_FBgn0033791:10_586;Name=Drl-2-cds;Parent=FBtr0087794;parent_type=mRNA" - - - - -	5369	8,960,057 – 8,960,151	+	12	119	72.63	-1.80	0.46	0.920815
3919	dm3.chr2R	8,984,395 – 8,984,531	- - - - - - - -	5370	8,984,395 – 8,984,506	-	3	115	88.70	-2.82	0.63	0.820522
3919	dm3.chr2R	8,984,395 – 8,984,531	- - - - - - - -	5371	8,984,435 – 8,984,531	-	5	115	54.16	-1.00	0.32	0.523468
3920	dm3.chr2R	8,998,722 – 8,998,834	- - - - - - - -	5372	8,998,722 – 8,998,834	-	7	113	61.79	-1.28	0.35	0.733658
3921	dm3.chr2R	9,007,777 – 9,007,828	- - - intron="intron;ID=intron_CG13325:1_CG13325:2;Name=CG13325-in;Parent=FBtr0087722;parent_type=mRNA" - - - -	5373	9,007,777 – 9,007,828	-	9	51	88.45	-2.64	0.77	0.975896
3922	dm3.chr2R	9,014,692 – 9,014,745	- - - - - - - -	5374	9,014,692 – 9,014,745	+	10	56	75.04	-1.83	0.38	0.602122
3923	dm3.chr2R	9,020,070 – 9,020,161	- - - - - - - -	5375	9,020,070 – 9,020,161	-	6	104	50.95	-2.36	0.12	0.866965
3924	dm3.chr2R	9,065,906 – 9,065,996	- - CDS="CDS;ID=CDS_CG17724:4_529;Name=CG17724-cds;Parent=FBtr0087771;parent_type=mRNA" - - - - -	5376	9,065,906 – 9,065,996	-	8	90	78.30	-1.50	0.54	0.553075
3925	dm3.chr2R	9,068,452 – 9,068,549	- - - - - - - -	5377	9,068,452 – 9,068,549	-	11	109	74.12	-1.23	0.61	0.886204
3926	dm3.chr2R	9,071,220 – 9,071,324	- - - intron="intron;ID=intron_FBgn0028991:3_FBgn0028991:2;Name=seq-in;Parent=FBtr0100501;parent_type=mRNA" - - - -	5378	9,071,220 – 9,071,324	-	8	111	50.45	-2.87	-0.00	0.755816
3927	dm3.chr2R	9,083,961 – 9,084,057	- - - - - - - -	5379	9,083,961 – 9,084,057	+	6	109	64.71	-1.45	0.40	0.882350
3928	dm3.chr2R	9,099,065 – 9,099,168	- - - - - - - -	5380	9,099,065 – 9,099,168	+	6	119	71.81	-1.27	0.51	0.613165
3929	dm3.chr2R	9,112,740 – 9,112,863	- - - intron="intron;ID=intron_CG4654:9_CG4654:10;Name=Dp-in;Parent=FBtr0087740;parent_type=mRNA" - - - -	5381	9,112,740 – 9,112,849	+	6	120	71.04	-1.47	0.45	0.552532
				5382	9,112,754 – 9,112,863	+	6	120	67.10	-2.10	0.35	0.883461
				5383	9,112,754 – 9,112,863	-	6	120	67.10	-1.54	0.53	0.964260
3930	dm3.chr2R	9,141,539 – 9,141,642	- - CDS="CDS;ID=CDS_CG4714:1_520;Name=CG4714-cds;Parent=FBtr0087756;parent_type=mRNA" - - - - -	5384	9,141,539 – 9,141,642	-	5	103	71.46	-1.18	0.57	0.759765
3931	dm3.chr2R	9,157,281 – 9,157,371	- - - intron="intron;ID=intron_FBgn0052843:3_FBgn0052843:2;Name=Dh31-R1-in;Parent=FBtr0087755;parent_type=mRNA" - - - -	5385	9,157,281 – 9,157,371	-	4	90	74.30	-2.45	0.57	0.965532
3932	dm3.chr2R	9,166,452 – 9,166,555	- - - intron="intron;ID=intron_FBgn0052843:11_FBgn0052843:10;Name=Dh31-R1-in;Parent=FBtr0087755;parent_type=mRNA" - - - -	5386	9,166,452 – 9,166,555	+	6	107	73.67	-0.98	0.65	0.717696
3933	dm3.chr2R	9,166,826 – 9,166,931	- - - intron="intron;ID=intron_FBgn0052843:11_FBgn0052843:10;Name=Dh31-R1-in;Parent=FBtr0087755;parent_type=mRNA" - - - -	5387	9,166,826 – 9,166,931	-	3	106	79.25	-1.63	0.72	0.553644
3934	dm3.chr2R	9,178,943 – 9,178,999	- - - intron="intron;ID=intron_FBgn0052843:11_FBgn0052843:10;Name=Dh31-R1-in;Parent=FBtr0087755;parent_type=mRNA" - - - -	5388	9,178,943 – 9,178,999	+	5	56	94.16	-1.82	0.83	0.601222
3934	dm3.chr2R	9,178,943 – 9,178,999		5389	9,178,943 – 9,178,999	-	5	56	94.16	-2.38	0.81	0.873424
3935	dm3.chr2R	9,179,113 – 9,179,221	- - - intron="intron;ID=intron_FBgn0052843:11_FBgn0052843:10;Name=Dh31-R1-in;Parent=FBtr0087755;parent_type=mRNA" - - - -	5390	9,179,113 – 9,179,221	-	7	118	70.74	-1.95	0.42	0.930396
3936	dm3.chr2R	9,182,790 – 9,182,886	- - - - - - - -	5391	9,182,790 – 9,182,886	+	8	121	65.03	-1.17	0.47	0.799931
3937	dm3.chr2R	9,184,975 – 9,185,077	- - - - - - - -	5392	9,184,975 – 9,185,077	+	12	115	62.82	-1.18	0.33	0.655116
3937	dm3.chr2R	9,184,975 – 9,185,077	- - - - - - - -	5393	9,184,975 – 9,185,077	-	12	115	62.82	-1.47	0.30	0.745900
3938	dm3.chr2R	9,189,965 – 9,190,074	- - - - - - - -	5394	9,189,965 – 9,190,074	+	5	119	64.31	-1.52	0.51	0.965643
3939	dm3.chr2R	9,192,499 – 9,192,634	- - - - - - - -	5395	9,192,499 – 9,192,595	+	5	96	87.90	-2.01	0.69	0.600916
3939	dm3.chr2R	9,192,499 – 9,192,634	- - - - - - - -	5396	9,192,530 – 9,192,634	+	5	105	92.15	-2.33	0.70	0.623628
3940	dm3.chr2R	9,193,504 – 9,193,617	- - - - - - - -	5397	9,193,504 – 9,193,617	+	11	118	78.43	-1.33	0.55	0.569221
3941	dm3.chr2R	9,195,679 – 9,195,766	- - - - - - - -	5398	9,195,679 – 9,195,766	-	4	88	85.47	-2.13	0.74	0.858850
3942	dm3.chr2R	9,196,523 – 9,196,591	- - - - - - - -	5399	9,196,523 – 9,196,591	+	7	68	87.96	-1.45	0.84	0.757526
3943	dm3.chr2R	9,196,924 – 9,197,018	- - - - - - - -	5400	9,196,924 – 9,197,018	-	10	107	77.61	-1.99	0.62	0.974499
3944	dm3.chr2R	9,197,748 – 9,197,848	- - - - - - - -	5401	9,197,748 – 9,197,848	-	5	100	90.18	-1.20	0.89	0.573905
3945	dm3.chr2R	9,203,689 – 9,203,785	- - - - - - - -	5402	9,203,689 – 9,203,785	+	7	113	73.23	-1.60	0.56	0.849830
3946	dm3.chr2R	9,209,220 – 9,209,338	- - - - - - - -	5403	9,209,220 – 9,209,338	-	5	121	77.94	-1.52	0.62	0.591854
3947	dm3.chr2R	9,216,905 – 9,217,000	FBnoncoding="pre_miRNA;ID=FBtr0304272;Name=mir-184-RM;Parent=FBgn0262391;Alias=CR42925-RM;Dbxref=FlyBase_Annotation_IDs:CR42925-RM,miRBase:MI0000354" - - - "Rfam_10.0=RF00657;mir-184;AAPU01010071.1/6418-6500\|2.4e-26" "Noncode_2.0=n178704_u177802_NW_045834_miRNA_Anopheles\|1.3e-12" "unique_Noncode_2.0=u177802_miRNA_Anopheles\|1.1e-12" "mirBase_v16=dme-mir-184\|6.1e-49"	5404	9,216,905 – 9,217,000	+	14	98	88.75	-4.68	0.83	0.999430
3947	dm3.chr2R	9,216,905 – 9,217,000		5405	9,216,905 – 9,217,000	-	14	98	88.75	-4.33	0.78	0.999353
3948	dm3.chr2R	9,220,592 – 9,220,699	- - - - - - - -	5406	9,220,592 – 9,220,699	+	9	110	83.59	-1.68	0.71	0.771005
3949	dm3.chr2R	9,231,647 – 9,231,753	- - - - - - - -	5407	9,231,647 – 9,231,753	+	6	113	86.77	-2.59	0.57	0.796812
3950	dm3.chr2R	9,233,475 – 9,233,569	- - - - - - - -	5408	9,233,475 – 9,233,569	+	3	98	58.62	-2.66	0.33	0.966153
3951	dm3.chr2R	9,247,096 – 9,247,189	- - - - - - - -	5409	9,247,096 – 9,247,189	+	6	118	68.04	-1.42	0.59	0.937981
3952	dm3.chr2R	9,249,337 – 9,249,438	- - - - - - - -	5410	9,249,337 – 9,249,438	+	8	101	86.19	-1.37	0.87	0.821716
3952	dm3.chr2R	9,249,337 – 9,249,438	- - - - - - - -	5411	9,249,337 – 9,249,438	-	8	101	86.19	-1.84	0.86	0.944867
3953	dm3.chr2R	9,252,630 – 9,252,737	- - - - - - - -	5412	9,252,630 – 9,252,737	-	6	112	79.18	-1.51	0.57	0.517720
3954	dm3.chr2R	9,260,280 – 9,260,385	- - - - - - - -	5413	9,260,280 – 9,260,385	+	6	117	69.56	-0.70	0.58	0.569215
3955	dm3.chr2R	9,267,657 – 9,267,783	- - - - - - - -	5414	9,267,657 – 9,267,769	-	12	118	82.05	-2.28	0.46	0.782886
3955	dm3.chr2R	9,267,657 – 9,267,783	- - - - - - - -	5415	9,267,692 – 9,267,783	-	11	106	82.89	-1.90	0.54	0.566140
3956	dm3.chr2R	9,278,914 – 9,279,014	- - - intron="intron;ID=intron_CG17050:1_CG17050:2;Name=CG17050-in;Parent=FBtr0087719;parent_type=mRNA" - - - -	5416	9,278,914 – 9,279,014	-	3	100	93.00	-1.92	0.90	0.883173
3957	dm3.chr2R	9,314,483 – 9,314,583	- - - intron="intron;ID=intron_FBgn0259221:17_FBgn0259221:16;Name=CG42321-in;Parent=FBtr0299756,FBtr0299763,FBtr0299764;parent_type=mRNA" - - - -	5417	9,314,483 – 9,314,583	-	5	106	75.05	-1.80	0.59	0.869376
3958	dm3.chr2R	9,315,192 – 9,315,305	- - - intron="intron;ID=intron_FBgn0259221:17_FBgn0259221:16;Name=CG42321-in;Parent=FBtr0299756,FBtr0299763,FBtr0299764;parent_type=mRNA" - - - -	5418	9,315,192 – 9,315,305	+	9	118	79.01	-3.63	0.52	0.998772
3959	dm3.chr2R	9,318,188 – 9,318,252	FBnoncoding="tRNA;ID=FBtr0089303;Name=tRNA:L3:49Fa-RA;Parent=FBgn0011909;Dbxref=FlyBase_Annotation_IDs:CR32841-RA;score_text=Weakly" tRNAscann="Leu_chr2R_trna76" - - "Rfam_10.0=RF00005;tRNA;AAQB01009405.1/322130-322251\|5.6e-23" - - -	5419	9,318,188 – 9,318,252	-	11	73	84.05	-1.09	0.85	0.733940
3960	dm3.chr2R	9,318,485 – 9,318,559	FBnoncoding="tRNA;ID=FBtr0087658;Name=tRNA:I:49Fb-RA;Parent=FBgn0011882;Dbxref=FlyBase_Annotation_IDs:CR30244-RA;score_text=Weakly" tRNAscann="Ile_chr2R_trna19" - - "Rfam_10.0=RF00005;tRNA;ABJB010861939.1/779-852\|2.8e-25" - - "mirBase_v16=cre-MIR916\|4.7e-15"	5420	9,318,485 – 9,318,559	-	12	74	79.92	-0.62	0.74	0.595472
3961	dm3.chr2R	9,318,789 – 9,318,862	FBnoncoding="tRNA;ID=FBtr0087659;Name=tRNA:I:49Fc-RA;Parent=FBgn0011883;Dbxref=FlyBase_Annotation_IDs:CR30521-RA;score_text=Weakly" tRNAscann="Ile_chr2R_trna20" - - "Rfam_10.0=RF00005;tRNA;ABJB010861939.1/779-852\|1.7e-26" - - "mirBase_v16=cre-MIR916\|4.6e-15"	5421	9,318,789 – 9,318,862	+	14	80	89.99	-1.30	0.88	0.739987
3961	dm3.chr2R	9,318,789 – 9,318,862		5422	9,318,789 – 9,318,862	-	14	80	89.99	-2.11	0.85	0.959121
3962	dm3.chr2R	9,319,278 – 9,319,379	FBnoncoding="tRNA;ID=FBtr0087660;Name=tRNA:I:49Fd-RA;Parent=FBgn0011884;Dbxref=FlyBase_Annotation_IDs:CR30246-RA;score_text=Weakly" tRNAscann="Ile_chr2R_trna21" - - "Rfam_10.0=RF00005;tRNA;ABJB010861939.1/779-852\|6.6e-27" - - "mirBase_v16=cre-MIR916\|6.8e-15"	5423	9,319,278 – 9,319,379	+	12	112	77.35	-1.11	0.89	0.948295
3962	dm3.chr2R	9,319,278 – 9,319,379		5424	9,319,278 – 9,319,379	-	12	112	77.35	-1.68	0.89	0.988250
3963	dm3.chr2R	9,325,368 – 9,325,445	FBnoncoding="tRNA;ID=FBtr0087665;Name=tRNA:CR30509-RA;Parent=FBgn0050509;Alias=CR30509-RA;Dbxref=FlyBase_Annotation_IDs:CR30509-RA;score_text=Weakly" tRNAscann="Ile_chr2R_trna24" - - "Rfam_10.0=RF00005;tRNA;ABJB010861939.1/779-852\|4.7e-27" - - "mirBase_v16=cre-MIR916\|4.9e-15"	5425	9,325,368 – 9,325,445	+	14	89	83.82	-1.49	0.90	0.953386
3963	dm3.chr2R	9,325,368 – 9,325,445		5426	9,325,368 – 9,325,445	-	14	89	83.82	-2.11	0.91	0.990894
3964	dm3.chr2R	9,348,060 – 9,348,140	- - - intron="intron;ID=intron_FBgn0000119:6_FBgn0000119:5;Name=arr-in;Parent=FBtr0087702;parent_type=mRNA" - - - -	5427	9,348,060 – 9,348,140	+	8	91	74.70	-1.43	0.50	0.560092
3965	dm3.chr2R	9,349,803 – 9,349,916	- - - intron="intron;ID=intron_FBgn0000119:6_FBgn0000119:5;Name=arr-in;Parent=FBtr0087702;parent_type=mRNA" - - - -	5428	9,349,803 – 9,349,916	-	5	115	90.31	-2.02	0.78	0.748044
3966	dm3.chr2R	9,351,906 – 9,351,967	- - - intron="intron;ID=intron_FBgn0000119:6_FBgn0000119:5;Name=arr-in;Parent=FBtr0087702;parent_type=mRNA" - - - -	5429	9,351,906 – 9,351,967	-	5	61	98.03	-1.19	1.02	0.865924
3967	dm3.chr2R	9,356,673 – 9,356,767	- - - intron="intron;ID=intron_FBgn0000119:6_FBgn0000119:5;Name=arr-in;Parent=FBtr0087702;parent_type=mRNA" - - - -	5430	9,356,673 – 9,356,767	-	3	95	90.88	-1.75	0.89	0.828161
3968	dm3.chr2R	9,359,686 – 9,359,740	- - - intron="intron;ID=intron_FBgn0000119:6_FBgn0000119:5;Name=arr-in;Parent=FBtr0087702;parent_type=mRNA" - - - -	5431	9,359,686 – 9,359,740	+	4	54	79.94	-1.88	0.85	0.968615
3968	dm3.chr2R	9,359,686 – 9,359,740		5432	9,359,686 – 9,359,740	-	4	54	79.94	-0.83	0.91	0.693150
3969	dm3.chr2R	9,360,320 – 9,360,420	- - - intron="intron;ID=intron_FBgn0000119:6_FBgn0000119:5;Name=arr-in;Parent=FBtr0087702;parent_type=mRNA" - - - -	5433	9,360,320 – 9,360,420	+	5	100	83.19	-1.00	0.93	0.764430
3970	dm3.chr2R	9,364,049 – 9,364,140	- - - intron="intron;ID=intron_FBgn0000119:6_FBgn0000119:5;Name=arr-in;Parent=FBtr0087702;parent_type=mRNA" - - - -	5434	9,364,049 – 9,364,140	-	6	99	90.53	-3.62	0.87	0.997915
3971	dm3.chr2R	9,366,601 – 9,366,702	- - - - - - - -	5435	9,366,601 – 9,366,702	+	6	120	65.73	-1.16	0.42	0.664098
3972	dm3.chr2R	9,367,314 – 9,367,404	- - - - - - - -	5436	9,367,314 – 9,367,404	-	4	90	89.27	-0.93	0.94	0.559189
3973	dm3.chr2R	9,368,504 – 9,368,610	- - - - - - - -	5437	9,368,504 – 9,368,610	-	9	120	76.30	-1.56	0.56	0.788489
3974	dm3.chr2R	9,370,228 – 9,370,319	- - - intron="intron;ID=intron_FBgn0000119:7_FBgn0000119:6;Name=arr-in;Parent=FBtr0087702;parent_type=mRNA" - - - -	5438	9,370,228 – 9,370,319	+	5	105	87.70	-2.35	0.85	0.974021
3974	dm3.chr2R	9,370,228 – 9,370,319		5439	9,370,228 – 9,370,319	-	5	105	87.70	-2.89	0.86	0.993763
3975	dm3.chr2R	9,371,993 – 9,372,069	- - - intron="intron;ID=intron_FBgn0033842:3_FBgn0033842:2;Name=cbc-in;Parent=FBtr0087701;parent_type=mRNA" - - - -	5440	9,371,993 – 9,372,069	-	3	76	75.12	-2.32	0.52	0.723779
3976	dm3.chr2R	9,379,153 – 9,379,227	- - CDS="CDS;ID=CDS_FBgn0033844:8_686;Name=bbc-cds;Parent=FBtr0087700,FBtr0087699,FBtr0305993;parent_type=mRNA" - - - - -	5441	9,379,153 – 9,379,227	+	11	74	85.87	-3.09	0.51	0.964367
3977	dm3.chr2R	9,383,003 – 9,383,079	- - - - - - - -	5442	9,383,003 – 9,383,079	-	6	84	94.49	-2.56	0.93	0.985935
3978	dm3.chr2R	9,390,265 – 9,390,320	- - - intron="intron;ID=intron_FBgn0033845:1_FBgn0033845:3;Name=mars-in;Parent=FBtr0301387;parent_type=mRNA" - - - -	5443	9,390,265 – 9,390,320	+	4	55	98.18	-1.43	1.00	0.888675
3979	dm3.chr2R	9,409,219 – 9,409,272	- - - intron="intron;ID=intron_CG33528:3_CG33528:4;Name=Vmat-in;Parent=FBtr0091491,FBtr0091492,FBtr0091493;parent_type=mRNA" - - - -	5444	9,409,219 – 9,409,272	+	6	64	72.24	-0.54	0.85	0.740385
3980	dm3.chr2R	9,412,570 – 9,412,628	- - - - - - - -	5445	9,412,570 – 9,412,628	-	6	67	74.36	-1.56	0.69	0.931040
3981	dm3.chr2R	9,412,832 – 9,412,926	- - - - - - - -	5446	9,412,832 – 9,412,926	+	12	115	56.95	-1.16	0.46	0.984962
3982	dm3.chr2R	9,418,417 – 9,418,515	- - - - - - - -	5447	9,418,417 – 9,418,515	+	7	112	64.38	-1.30	0.38	0.715241
3983	dm3.chr2R	9,423,540 – 9,423,627	FBnoncoding="tRNA;ID=FBtr0087688;Name=tRNA:K2:50C-RA;Parent=FBgn0011896;Dbxref=FlyBase_Annotation_IDs:CR30507-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna75" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|9.0e-29" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|1.9e-17" "unique_Noncode_2.0=u201439_mRNAlike\|1.7e-17" -	5448	9,423,540 – 9,423,627	+	13	93	70.29	-2.89	0.87	0.999453
3983	dm3.chr2R	9,423,540 – 9,423,627		5449	9,423,540 – 9,423,627	-	13	93	70.29	-1.89	0.92	0.996947
3984	dm3.chr2R	9,427,455 – 9,427,530	- - - - - - - -	5450	9,427,455 – 9,427,530	-	7	79	58.68	-1.21	0.48	0.984351
3985	dm3.chr2R	9,454,775 – 9,454,876	- - - - - - - -	5451	9,454,775 – 9,454,876	-	7	117	74.25	-2.85	0.26	0.574258
3986	dm3.chr2R	9,458,252 – 9,458,400	- - - - - - - -	5452	9,458,252 – 9,458,372	-	8	120	73.12	-1.81	0.42	0.809446
3986	dm3.chr2R	9,458,252 – 9,458,400	- - - - - - - -	5453	9,458,292 – 9,458,400	-	8	114	71.86	-1.70	0.43	0.780230
3987	dm3.chr2R	9,464,323 – 9,464,430	- - - - - - - -	5454	9,464,323 – 9,464,430	+	11	120	83.66	-3.91	0.87	0.999233
3987	dm3.chr2R	9,464,323 – 9,464,430	- - - - - - - -	5455	9,464,323 – 9,464,430	-	11	120	83.66	-3.36	0.77	0.998425
3988	dm3.chr2R	9,467,474 – 9,467,597	- - - - - - - -	5456	9,467,474 – 9,467,572	+	11	114	71.99	-1.10	0.54	0.859175
3988	dm3.chr2R	9,467,474 – 9,467,597	- - - - - - - -	5457	9,467,502 – 9,467,597	+	8	111	69.57	-1.07	0.54	0.901573
3989	dm3.chr2R	9,483,295 – 9,483,391	- - CDS="CDS;ID=CDS_CG6197:2_518;Name=CG6197-cds;Parent=FBtr0087623;parent_type=mRNA" - - - - -	5458	9,483,295 – 9,483,391	+	12	108	70.57	-0.84	0.47	0.518105
3990	dm3.chr2R	9,496,025 – 9,496,138	- - - - - - - -	5459	9,496,025 – 9,496,138	-	5	113	73.39	-2.02	0.47	0.869183
3991	dm3.chr2R	9,504,347 – 9,504,460	- - - - - - - -	5460	9,504,347 – 9,504,460	+	5	114	75.64	-2.88	0.60	0.995798
3991	dm3.chr2R	9,504,347 – 9,504,460	- - - - - - - -	5461	9,504,347 – 9,504,460	-	5	114	75.64	-1.56	0.63	0.805931
3992	dm3.chr2R	9,523,054 – 9,523,159	- - - intron="intron;ID=intron_FBgn0000633:1_FBgn0000633:2;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5462	9,523,054 – 9,523,159	-	6	106	77.78	-1.84	0.61	0.910305
3993	dm3.chr2R	9,535,666 – 9,535,729	- - - intron="intron;ID=intron_FBgn0000633:2_FBgn0000633:3;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5463	9,535,666 – 9,535,729	-	6	64	83.37	-0.77	0.91	0.614567
3994	dm3.chr2R	9,536,725 – 9,536,832	- - - intron="intron;ID=intron_FBgn0000633:2_FBgn0000633:3;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5464	9,536,725 – 9,536,816	+	13	106	76.44	-1.13	0.81	0.954596
3994	dm3.chr2R	9,536,725 – 9,536,832		5465	9,536,739 – 9,536,832	+	13	116	81.05	-2.07	0.86	0.987845
3995	dm3.chr2R	9,542,147 – 9,542,239	- - - intron="intron;ID=intron_FBgn0000633:3_FBgn0000633:4;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5466	9,542,147 – 9,542,239	-	10	120	85.20	-1.12	0.93	0.827778
3996	dm3.chr2R	9,543,198 – 9,543,296	- - - intron="intron;ID=intron_FBgn0000633:3_FBgn0000633:4;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5467	9,543,198 – 9,543,296	+	11	119	81.17	-2.48	0.70	0.984056
3996	dm3.chr2R	9,543,198 – 9,543,296		5468	9,543,198 – 9,543,296	-	11	119	81.17	-1.93	0.58	0.689242
3997	dm3.chr2R	9,544,788 – 9,544,880	- - - intron="intron;ID=intron_FBgn0000633:3_FBgn0000633:4;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5469	9,544,788 – 9,544,880	+	8	110	56.97	-0.86	0.43	0.880920
3998	dm3.chr2R	9,555,553 – 9,555,703	- - CDS="CDS;ID=CDS_CG18368:1_502;Name=CG18368-cds;Parent=FBtr0087627;parent_type=mRNA" intron="intron;ID=intron_FBgn0000633:3_FBgn0000633:4;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5470	9,555,553 – 9,555,663	+	6	117	75.55	-1.24	0.60	0.613103
3998	dm3.chr2R	9,555,553 – 9,555,703		5471	9,555,592 – 9,555,703	+	6	117	76.64	-1.70	0.54	0.735584
3999	dm3.chr2R	9,556,225 – 9,556,322	- - CDS="CDS;ID=CDS_CG18368:1_502;Name=CG18368-cds;Parent=FBtr0087627;parent_type=mRNA" intron="intron;ID=intron_FBgn0000633:3_FBgn0000633:4;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5472	9,556,225 – 9,556,322	-	5	97	82.68	-1.47	0.80	0.795445
4000	dm3.chr2R	9,558,694 – 9,558,797	- - CDS="CDS;ID=CDS_CG18368:1_502;Name=CG18368-cds;Parent=FBtr0087627;parent_type=mRNA" intron="intron;ID=intron_FBgn0000633:3_FBgn0000633:4;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5473	9,558,694 – 9,558,797	+	6	103	77.28	-4.65	0.71	0.999834
4000	dm3.chr2R	9,558,694 – 9,558,797		5474	9,558,694 – 9,558,797	-	6	103	77.28	-3.35	0.71	0.999393
4001	dm3.chr2R	9,585,811 – 9,585,905	- - - - - - - -	5475	9,585,811 – 9,585,905	-	7	103	78.14	-1.49	0.58	0.586995
4002	dm3.chr2R	9,589,033 – 9,589,130	- - - - - - - -	5476	9,589,033 – 9,589,130	+	12	114	77.27	-1.29	0.57	0.500000
4003	dm3.chr2R	9,612,523 – 9,612,589	- - - intron="intron;ID=intron_FBgn0000633:9_FBgn0000633:10;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5477	9,612,523 – 9,612,589	+	3	66	66.15	-2.67	0.52	0.993936
4004	dm3.chr2R	9,614,976 – 9,615,086	- - - intron="intron;ID=intron_FBgn0000633:11_FBgn0000633:12;Name=fas-in;Parent=FBtr0087625;parent_type=mRNA" - - - -	5478	9,614,976 – 9,615,086	-	11	114	81.90	-1.67	0.56	0.585815
4005	dm3.chr2R	9,637,127 – 9,637,219	- - - - - - - -	5479	9,637,127 – 9,637,219	+	5	92	79.69	-2.30	0.61	0.938137
4006	dm3.chr2R	9,639,091 – 9,639,141	- - - - - - - -	5480	9,639,091 – 9,639,141	+	5	50	94.60	-1.69	0.95	0.908678
4007	dm3.chr2R	9,644,154 – 9,644,263	- - CDS="CDS;ID=CDS_CG6280:3_527;Name=CG6280-cds;Parent=FBtr0087628;parent_type=mRNA" - - - - -	5481	9,644,154 – 9,644,263	-	8	117	65.56	-1.51	0.38	0.883420
4008	dm3.chr2R	9,644,488 – 9,644,596	- - CDS="CDS;ID=CDS_CG6280:4_527;Name=CG6280-cds;Parent=FBtr0087628;parent_type=mRNA" - - - - -	5482	9,644,488 – 9,644,596	-	11	114	67.17	-1.04	0.38	0.572747
4009	dm3.chr2R	9,648,292 – 9,648,393	- - - - - - - -	5483	9,648,292 – 9,648,393	-	9	116	70.41	-1.07	0.43	0.608986
4010	dm3.chr2R	9,651,744 – 9,651,853	- - - - - - - -	5484	9,651,744 – 9,651,853	-	6	112	72.30	-2.00	0.35	0.597985
4011	dm3.chr2R	9,657,362 – 9,657,481	- - - - - - - -	5485	9,657,362 – 9,657,455	+	11	116	85.32	-1.57	0.76	0.703473
4011	dm3.chr2R	9,657,362 – 9,657,481	- - - - - - - -	5486	9,657,380 – 9,657,481	+	12	110	82.30	-1.26	0.77	0.806573
4012	dm3.chr2R	9,663,767 – 9,663,872	- - CDS="CDS;ID=CDS_CG13338:4_503;Name=Cpr50Ca-cds;Parent=FBtr0087629;parent_type=mRNA" - - - - -	5487	9,663,767 – 9,663,872	+	6	105	82.53	-2.65	0.75	0.991494
4013	dm3.chr2R	9,666,118 – 9,666,238	- - CDS="CDS;ID=CDS_CG13340:1_509;Name=CG13340-cds;Parent=FBtr0087649;parent_type=mRNA" intron="intron;ID=intron_CG13338:4_CG13338:5;Name=Cpr50Ca-in;Parent=FBtr0087629;parent_type=mRNA" - - - -	5488	9,666,118 – 9,666,238	-	14	120	77.43	-1.67	0.51	0.890947
4014	dm3.chr2R	9,684,823 – 9,684,924	- - - intron="intron;ID=intron_CG6305:2_CG6305:3;Name=Cpr50Cb-in;Parent=FBtr0087630;parent_type=mRNA" - - - -	5489	9,684,823 – 9,684,924	+	6	107	64.89	-2.73	0.44	0.999101
4014	dm3.chr2R	9,684,823 – 9,684,924		5490	9,684,823 – 9,684,924	-	6	107	64.89	-1.54	0.41	0.918271
4015	dm3.chr2R	9,693,033 – 9,693,133	- - - - - - - -	5491	9,693,033 – 9,693,133	-	5	113	58.56	-1.94	0.36	0.966165
4016	dm3.chr2R	9,699,016 – 9,699,107	- - - intron="intron;ID=intron_FBgn0261041:9_FBgn0261041:11;Name=stj-in;Parent=FBtr0304695;parent_type=mRNA" - - - -	5492	9,699,016 – 9,699,107	+	11	104	80.62	-1.24	0.78	0.810063
4017	dm3.chr2R	9,716,614 – 9,716,677	- - - intron="intron;ID=intron_CG6329:7_CG6329:2;Name=CG6329-in;Parent=FBtr0087635;parent_type=mRNA" - - - -	5493	9,716,614 – 9,716,677	+	5	63	80.49	-1.22	0.74	0.523235
4017	dm3.chr2R	9,716,614 – 9,716,677		5494	9,716,614 – 9,716,677	-	5	63	80.49	-1.73	0.74	0.875023
4018	dm3.chr2R	9,719,611 – 9,719,703	- - - - - - - -	5495	9,719,611 – 9,719,703	+	5	92	92.59	-2.53	0.95	0.990451
4019	dm3.chr2R	9,740,290 – 9,740,418	- - - - - - - -	5496	9,740,290 – 9,740,418	+	8	128	63.97	-3.10	0.33	0.998851
4019	dm3.chr2R	9,740,290 – 9,740,418	- - - - - - - -	5497	9,740,290 – 9,740,418	-	8	128	63.97	-3.91	0.25	0.999334
4020	dm3.chr2R	9,761,712 – 9,761,823	- - CDS="CDS;ID=CDS_FBgn0013733:17_489;Name=shot-cds;Parent=FBtr0301964;parent_type=mRNA" - - - - -	5498	9,761,712 – 9,761,823	+	14	120	66.57	-1.04	0.38	0.708052
4021	dm3.chr2R	9,767,846 – 9,767,950	- - CDS="CDS;ID=CDS_FBgn0013733:19_661;Name=shot-cds;Parent=FBtr0304851,FBtr0304852,FBtr0304853;parent_type=mRNA" - - - - -	5499	9,767,846 – 9,767,950	-	14	116	83.68	-2.18	0.60	0.912230
4022	dm3.chr2R	9,776,945 – 9,777,058	- - CDS="CDS;ID=CDS_FBgn0013733:21_582;Name=shot-cds;Parent=FBtr0087621;parent_type=mRNA" - - - - -	5500	9,776,945 – 9,777,058	+	6	113	71.45	-1.32	0.47	0.677430
4023	dm3.chr2R	9,785,676 – 9,785,770	- - - - - - - -	5501	9,785,676 – 9,785,770	+	7	110	72.31	-1.39	0.54	0.662457
4024	dm3.chr2R	9,785,978 – 9,786,049	- - - - - - - -	5502	9,785,978 – 9,786,049	-	6	72	69.85	-2.05	0.53	0.989295
4025	dm3.chr2R	9,786,935 – 9,787,042	- - CDS="CDS;ID=CDS_FBgn0013733:26_582;Name=shot-cds;Parent=FBtr0087621,FBtr0301593;parent_type=mRNA" - - - - -	5503	9,786,935 – 9,787,042	+	13	113	78.07	-1.59	0.55	0.871143
4026	dm3.chr2R	9,795,300 – 9,795,393	- - CDS="CDS;ID=CDS_FBgn0013733:34_661;Name=shot-cds;Parent=FBtr0304852,FBtr0304853;parent_type=mRNA" - - - - -	5504	9,795,300 – 9,795,393	+	14	105	62.80	-1.28	0.29	0.592460
4027	dm3.chr2R	9,805,348 – 9,805,417	- - CDS="CDS;ID=CDS_FBgn0013733:40_583;Name=shot-cds;Parent=FBtr0087617,FBtr0087618,FBtr0087619,FBtr0087616,FBtr0273222,FBtr0273223,FBtr0273224,FBtr0273225,FBtr0273226,FBtr0301591,FBtr0301592;parent_type=mRNA" - - - - -	5505	9,805,348 – 9,805,417	+	14	69	94.43	-1.34	0.92	0.698920
4028	dm3.chr2R	9,807,897 – 9,807,994	- - - intron="intron;ID=intron_FBgn0013733:41_FBgn0013733:40;Name=shot-in;Parent=FBtr0087618,FBtr0087619,FBtr0273225,FBtr0273226,FBtr0301592;parent_type=mRNA" - - - -	5506	9,807,897 – 9,807,994	-	6	104	64.56	-1.17	0.47	0.837872
4029	dm3.chr2R	9,815,463 – 9,815,607	- - - - - - - -	5507	9,815,463 – 9,815,607	+	5	159	88.08	-2.25	0.63	0.540526
4030	dm3.chr2R	9,821,105 – 9,821,225	- - CDS="CDS;ID=CDS_FBgn0013733:43_583;Name=shot-cds;Parent=FBtr0087617,FBtr0087616,FBtr0273222,FBtr0273223,FBtr0273224,FBtr0301591;parent_type=mRNA" - - - - -	5508	9,821,105 – 9,821,225	+	13	125	78.24	-0.93	0.65	0.691417
4030	dm3.chr2R	9,821,105 – 9,821,225		5509	9,821,105 – 9,821,225	-	13	125	78.24	-0.98	0.65	0.730320
4031	dm3.chr2R	9,828,305 – 9,828,424	- - - intron="intron;ID=intron_FBgn0013733:44_FBgn0013733:43;Name=shot-in;Parent=FBtr0087617,FBtr0087616,FBtr0273222,FBtr0273223,FBtr0273224,FBtr0301591,FBtr0304849,FBtr0304850;parent_type=mRNA" - - - -	5510	9,828,305 – 9,828,358	+	5	55	94.24	-1.52	0.87	0.542930
				5511	9,828,305 – 9,828,358	-	5	55	94.24	-3.16	1.05	0.998718
				5512	9,828,358 – 9,828,424	+	8	79	81.49	-2.39	0.62	0.943667
				5513	9,828,358 – 9,828,424	-	8	79	81.49	-3.27	0.66	0.997096
4032	dm3.chr2R	9,831,937 – 9,832,029	- - - - - - - -	5514	9,831,937 – 9,832,029	+	9	113	69.47	-2.46	0.23	0.538132
4033	dm3.chr2R	9,838,337 – 9,838,428	- - CDS="CDS;ID=CDS_FBgn0026611:7_682;Name=AGO1-cds;Parent=FBtr0087613;parent_type=mRNA" - - - - -	5515	9,838,337 – 9,838,428	+	12	91	88.53	-2.08	0.77	0.906045
4034	dm3.chr2R	9,842,173 – 9,842,313	- - CDS="CDS;ID=CDS_FBgn0026611:11_678;Name=AGO1-cds;Parent=FBtr0087612,FBtr0305592;parent_type=mRNA" intron="intron;ID=intron_CG33155:1_CG33155:2;Name=CG33155-in;Parent=FBtr0100451;parent_type=mRNA" - - - -	5516	9,842,173 – 9,842,313	+	12	150	76.32	-3.38	0.39	0.995648
4034	dm3.chr2R	9,842,173 – 9,842,313		5517	9,842,173 – 9,842,313	-	12	150	76.32	-3.72	0.44	0.999138
4035	dm3.chr2R	9,842,983 – 9,843,136	- - CDS="CDS;ID=CDS_CG33155:3_498;Name=CG33155-cds;Parent=FBtr0100451,FBtr0100452;parent_type=mRNA" - - - - -	5518	9,842,983 – 9,843,103	+	13	120	83.78	-2.17	0.68	0.961714
				5519	9,843,023 – 9,843,136	+	12	120	73.12	-2.11	0.45	0.965003
				5520	9,843,023 – 9,843,136	-	12	120	73.12	-2.24	0.47	0.984129
4036	dm3.chr2R	9,861,036 – 9,861,126	- - - - - - - -	5521	9,861,036 – 9,861,126	-	9	99	72.07	-3.38	0.64	0.999820
4037	dm3.chr2R	9,869,938 – 9,870,047	- - CDS="CDS;ID=CDS_FBgn0033890:1_628;Name=CG13350-cds;Parent=FBtr0087606;parent_type=mRNA" - - - - -	5522	9,869,938 – 9,870,047	+	14	117	67.43	-1.19	0.41	0.884337
4038	dm3.chr2R	9,873,208 – 9,873,339	- - CDS="CDS;ID=CDS_FBgn0020620:1_628;Name=RN-tre-cds;Parent=FBtr0087603,FBtr0302380;parent_type=mRNA" - - - - -	5523	9,873,208 – 9,873,299	+	9	109	72.34	-1.92	0.57	0.976914
				5524	9,873,208 – 9,873,299	-	9	109	72.34	-1.81	0.69	0.989270
				5525	9,873,224 – 9,873,339	+	10	115	77.23	-1.10	0.71	0.884774
4039	dm3.chr2R	9,873,444 – 9,873,544	- - - - - - - -	5526	9,873,444 – 9,873,544	-	7	109	72.77	-0.58	0.71	0.646074
4040	dm3.chr2R	9,893,230 – 9,893,324	- - - intron="intron;ID=intron_CG8118:8_CG8118:2;Name=mam-in;Parent=FBtr0087596;parent_type=mRNA" - - - -	5527	9,893,230 – 9,893,324	+	7	94	72.76	-2.20	0.62	0.996678
4040	dm3.chr2R	9,893,230 – 9,893,324		5528	9,893,230 – 9,893,324	-	7	94	72.76	-1.38	0.59	0.936796
4041	dm3.chr2R	9,896,866 – 9,896,932	- - - intron="intron;ID=intron_CG8118:1_CG8118:2;Name=mam-in;Parent=FBtr0087597;parent_type=mRNA" - - - -	5529	9,896,866 – 9,896,932	-	9	68	69.91	-0.97	0.47	0.736273
4042	dm3.chr2R	9,899,845 – 9,899,942	- - - intron="intron;ID=intron_CG8118:2_CG8118:3;Name=mam-in;Parent=FBtr0087596,FBtr0087597;parent_type=mRNA" - - - -	5530	9,899,845 – 9,899,942	+	6	101	70.95	-1.40	0.69	0.968748
4042	dm3.chr2R	9,899,845 – 9,899,942		5531	9,899,845 – 9,899,942	-	6	101	70.95	-0.89	0.67	0.815888
4043	dm3.chr2R	9,902,256 – 9,902,418	- - - intron="intron;ID=intron_CG8118:2_CG8118:3;Name=mam-in;Parent=FBtr0087596,FBtr0087597;parent_type=mRNA" - - - -	5532	9,902,256 – 9,902,350	+	5	99	82.84	-1.67	0.68	0.579120
				5533	9,902,256 – 9,902,350	-	5	99	82.84	-1.86	0.64	0.615838
				5534	9,902,284 – 9,902,385	+	5	112	71.66	-2.18	0.54	0.975943
				5535	9,902,284 – 9,902,385	-	5	112	71.66	-2.35	0.53	0.984509
				5536	9,902,310 – 9,902,418	+	5	125	65.77	-1.92	0.44	0.950747
				5537	9,902,310 – 9,902,418	-	5	125	65.77	-1.80	0.47	0.955341
4044	dm3.chr2R	9,903,915 – 9,904,040	- - - intron="intron;ID=intron_CG8118:2_CG8118:3;Name=mam-in;Parent=FBtr0087596,FBtr0087597;parent_type=mRNA" - - - -	5538	9,903,915 – 9,904,010	+	6	107	89.39	-1.65	0.80	0.606963
4044	dm3.chr2R	9,903,915 – 9,904,040		5539	9,903,943 – 9,904,040	+	7	111	78.90	-1.27	0.70	0.705511
4045	dm3.chr2R	9,915,022 – 9,915,123	- - - intron="intron;ID=intron_CG8118:2_CG8118:3;Name=mam-in;Parent=FBtr0087596,FBtr0087597;parent_type=mRNA" - - - -	5540	9,915,022 – 9,915,123	+	5	116	89.06	-1.87	0.80	0.730336
4046	dm3.chr2R	9,915,726 – 9,915,816	- - - intron="intron;ID=intron_CG8118:2_CG8118:3;Name=mam-in;Parent=FBtr0087596,FBtr0087597;parent_type=mRNA" - - - -	5541	9,915,726 – 9,915,816	+	7	90	82.06	-1.30	0.73	0.551566
4047	dm3.chr2R	9,920,333 – 9,920,463	- - - intron="intron;ID=intron_CG8118:9_CG8118:10;Name=mam-in;Parent=FBtr0087598;parent_type=mRNA" - - - -	5542	9,920,333 – 9,920,453	-	5	120	80.79	-2.04	0.90	0.987193
4047	dm3.chr2R	9,920,333 – 9,920,463		5543	9,920,347 – 9,920,463	-	7	120	75.83	-1.28	0.84	0.948416
4048	dm3.chr2R	9,949,396 – 9,949,486	- - - - - - - -	5544	9,949,396 – 9,949,486	+	10	100	60.64	-1.83	0.52	0.999000
4048	dm3.chr2R	9,949,396 – 9,949,486	- - - - - - - -	5545	9,949,396 – 9,949,486	-	10	100	60.64	-2.20	0.67	0.999842
4049	dm3.chr2R	9,950,340 – 9,950,397	- - CDS="CDS;ID=CDS_FBgn0040752:2_664;Name=Prosap-cds;Parent=FBtr0087601;parent_type=mRNA" - - - - -	5546	9,950,340 – 9,950,397	+	5	57	92.46	-2.24	0.85	0.925353
4049	dm3.chr2R	9,950,340 – 9,950,397		5547	9,950,340 – 9,950,397	-	5	57	92.46	-1.45	0.86	0.521953
4050	dm3.chr2R	9,964,167 – 9,964,269	- - - intron="intron;ID=intron_FBgn0040752:11_FBgn0040752:10;Name=Prosap-in;Parent=FBtr0087601,FBtr0304956;parent_type=mRNA" - - - -	5548	9,964,167 – 9,964,269	-	3	104	78.93	-1.13	0.83	0.550732
4051	dm3.chr2R	9,971,697 – 9,971,800	- - - intron="intron;ID=intron_FBgn0040752:11_FBgn0040752:10;Name=Prosap-in;Parent=FBtr0087601,FBtr0304956;parent_type=mRNA" - - - -	5549	9,971,697 – 9,971,800	+	6	119	65.01	-1.29	0.45	0.880721
4052	dm3.chr2R	9,988,068 – 9,988,126	- - - intron="intron;ID=intron_FBgn0040752:12_FBgn0040752:11;Name=Prosap-in;Parent=FBtr0087601,FBtr0304956;parent_type=mRNA" - - - -	5550	9,988,068 – 9,988,126	+	4	58	62.93	-0.47	0.59	0.652544
4052	dm3.chr2R	9,988,068 – 9,988,126		5551	9,988,068 – 9,988,126	-	4	58	62.93	-0.72	0.52	0.628508
4053	dm3.chr2R	9,997,627 – 9,997,721	- - - intron="intron;ID=intron_FBgn0040752:12_FBgn0040752:11;Name=Prosap-in;Parent=FBtr0087601,FBtr0304956;parent_type=mRNA" - - - -	5552	9,997,627 – 9,997,721	+	6	108	73.09	-1.64	0.69	0.965695
4054	dm3.chr2R	10,000,136 – 10,000,254	- - - intron="intron;ID=intron_FBgn0040752:12_FBgn0040752:11;Name=Prosap-in;Parent=FBtr0087601,FBtr0304956;parent_type=mRNA" - - - -	5553	10,000,136 – 10,000,230	+	11	109	62.05	-1.11	0.45	0.971546
4054	dm3.chr2R	10,000,136 – 10,000,254		5554	10,000,161 – 10,000,254	+	10	118	69.37	-1.77	0.46	0.942090
4055	dm3.chr2R	10,003,266 – 10,003,379	- - - intron="intron;ID=intron_FBgn0040752:13_FBgn0040752:12;Name=Prosap-in;Parent=FBtr0087601,FBtr0304956;parent_type=mRNA" - - - -	5555	10,003,266 – 10,003,379	-	5	119	82.61	-2.53	0.58	0.855018
4056	dm3.chr2R	10,006,691 – 10,006,794	- - - intron="intron;ID=intron_FBgn0040752:13_FBgn0040752:12;Name=Prosap-in;Parent=FBtr0087601,FBtr0304956;parent_type=mRNA" - - - -	5556	10,006,691 – 10,006,794	+	5	103	78.88	-1.64	0.69	0.852691
4057	dm3.chr2R	10,008,285 – 10,008,386	- - - intron="intron;ID=intron_FBgn0040752:13_FBgn0040752:12;Name=Prosap-in;Parent=FBtr0087601,FBtr0304956;parent_type=mRNA" - - - -	5557	10,008,285 – 10,008,386	-	5	101	92.25	-2.06	0.77	0.639189
4058	dm3.chr2R	10,022,869 – 10,022,925	- - - intron="intron;ID=intron_FBgn0040752:13_FBgn0040752:12;Name=Prosap-in;Parent=FBtr0087601,FBtr0304956;parent_type=mRNA" - - - -	5558	10,022,869 – 10,022,925	+	5	56	96.43	-2.02	0.95	0.946677
4058	dm3.chr2R	10,022,869 – 10,022,925		5559	10,022,869 – 10,022,925	-	5	56	96.43	-2.18	0.79	0.586799
4059	dm3.chr2R	10,045,554 – 10,045,673	- - CDS="CDS;ID=CDS_FBgn0033899:1_649;Name=CG13016-cds;Parent=FBtr0087519;parent_type=mRNA" - - - - -	5560	10,045,554 – 10,045,673	+	12	123	68.42	-0.64	0.46	0.597705
4060	dm3.chr2R	10,062,291 – 10,062,394	- - - intron="intron;ID=intron_FBgn0000289:7_FBgn0000289:8;Name=cg-in;Parent=FBtr0087528;parent_type=mRNA" - - - -	5561	10,062,291 – 10,062,394	+	6	104	92.32	-2.52	0.83	0.959241
4060	dm3.chr2R	10,062,291 – 10,062,394		5562	10,062,291 – 10,062,394	-	6	104	92.32	-3.16	0.81	0.990145
4061	dm3.chr2R	10,064,638 – 10,064,744	- - - - - - - -	5563	10,064,638 – 10,064,744	+	6	106	84.97	-1.53	0.79	0.775927
4061	dm3.chr2R	10,064,638 – 10,064,744	- - - - - - - -	5564	10,064,638 – 10,064,744	-	6	106	84.97	-1.94	0.73	0.871017
4062	dm3.chr2R	10,090,688 – 10,090,752	- - - - - - - -	5565	10,090,688 – 10,090,752	+	14	79	63.19	-0.59	0.44	0.566607
4063	dm3.chr2R	10,094,263 – 10,094,363	- - - intron="intron;ID=intron_CG8404:1_CG8404:2;Name=Sox15-in;Parent=FBtr0087576;parent_type=mRNA" - - - -	5566	10,094,263 – 10,094,363	-	8	119	68.02	-2.14	0.40	0.898017
4064	dm3.chr2R	10,097,838 – 10,098,003	- - - intron="intron;ID=intron_CG8404:1_CG8404:2;Name=Sox15-in;Parent=FBtr0087576;parent_type=mRNA" - - - -	5567	10,097,838 – 10,097,956	-	9	121	78.33	-2.26	0.44	0.859647
				5568	10,097,877 – 10,097,980	+	6	103	85.55	-3.71	0.69	0.998257
				5569	10,097,877 – 10,097,980	-	6	103	85.55	-2.86	0.79	0.993858
				5570	10,097,906 – 10,098,003	+	6	98	75.60	-3.77	0.63	0.999686
				5571	10,097,906 – 10,098,003	-	6	98	75.60	-2.11	0.65	0.984655
4065	dm3.chr2R	10,103,276 – 10,103,375	FBnoncoding="pre_miRNA;ID=FBtr0304327;Name=mir-308-RM;Parent=FBgn0262407;Alias=CR42951-RM;Dbxref=FlyBase_Annotation_IDs:CR42951-RM,miRBase:MI0000419" - - intron="intron;ID=intron_CG8415:2_CG8415:3;Name=RpS23-in;Parent=FBtr0087575;parent_type=mRNA" "Rfam_10.0=RF00743;mir-308;AE013599.4/10103307-10103369\|1.1e-28" - - "mirBase_v16=dme-mir-308\|2.0e-30"	5572	10,103,276 – 10,103,375	+	13	106	72.37	-2.09	0.43	0.987597
4065	dm3.chr2R	10,103,276 – 10,103,375		5573	10,103,276 – 10,103,375	-	13	106	72.37	-3.64	0.62	0.999945
4066	dm3.chr2R	10,109,103 – 10,109,196	- - - intron="intron;ID=intron_CG8468:6_CG8468:2;Name=CG8468-in;Parent=FBtr0087533;parent_type=mRNA" - - - -	5574	10,109,103 – 10,109,196	+	5	105	69.85	-1.47	0.45	0.564627
4067	dm3.chr2R	10,109,236 – 10,109,328	- - - intron="intron;ID=intron_CG8468:6_CG8468:2;Name=CG8468-in;Parent=FBtr0087533;parent_type=mRNA" - - - -	5575	10,109,236 – 10,109,328	-	5	111	67.29	-1.10	0.59	0.846077
4068	dm3.chr2R	10,130,617 – 10,130,707	- - CDS="CDS;ID=CDS_CG8494:5_528;Name=CG8494-cds;Parent=FBtr0087535;parent_type=mRNA" - - - - -	5576	10,130,617 – 10,130,707	-	5	111	63.86	-1.21	0.53	0.869039
4069	dm3.chr2R	10,134,570 – 10,134,660	- - CDS="CDS;ID=CDS_CG8523:1_527;Name=Mdr50-cds;Parent=FBtr0087537;parent_type=mRNA" - - - - -	5577	10,134,570 – 10,134,660	+	12	114	66.34	-1.64	0.33	0.618689
4070	dm3.chr2R	10,162,610 – 10,162,709	- - - - - - - -	5578	10,162,610 – 10,162,709	+	10	111	77.05	-2.09	0.59	0.974534
4070	dm3.chr2R	10,162,610 – 10,162,709	- - - - - - - -	5579	10,162,610 – 10,162,709	-	10	111	77.05	-2.82	0.43	0.979101
4071	dm3.chr2R	10,180,136 – 10,180,209	- - - intron="intron;ID=intron_FBgn0028428:9_FBgn0028428:12;Name=Ih-in;Parent=FBtr0100372;parent_type=mRNA" - - - -	5580	10,180,136 – 10,180,209	-	7	88	52.45	-3.07	0.03	0.733941
4072	dm3.chr2R	10,187,272 – 10,187,340	- - - - - - - -	5581	10,187,272 – 10,187,340	-	8	68	98.74	-0.86	0.99	0.500000
4073	dm3.chr2R	10,207,555 – 10,207,717	- - - intron="intron;ID=intron_FBgn0085408:2_FBgn0085408:3;Name=Shroom-in;Parent=FBtr0112614;parent_type=mRNA" - - - -	5582	10,207,555 – 10,207,717	+	5	176	76.73	-2.18	0.57	0.938747
4073	dm3.chr2R	10,207,555 – 10,207,717		5583	10,207,555 – 10,207,717	-	5	176	76.73	-2.16	0.55	0.915558
4074	dm3.chr2R	10,211,338 – 10,211,428	- - - intron="intron;ID=intron_FBgn0085408:2_FBgn0085408:3;Name=Shroom-in;Parent=FBtr0112614;parent_type=mRNA" - - - -	5584	10,211,338 – 10,211,428	+	11	118	72.96	-0.77	0.61	0.505973
4075	dm3.chr2R	10,211,743 – 10,211,838	- - - intron="intron;ID=intron_FBgn0085408:2_FBgn0085408:3;Name=Shroom-in;Parent=FBtr0112614;parent_type=mRNA" - - - -	5585	10,211,743 – 10,211,838	+	7	103	77.08	-1.57	0.58	0.686547
4076	dm3.chr2R	10,219,613 – 10,219,701	- - - intron="intron;ID=intron_FBgn0085408:7_FBgn0085408:10;Name=Shroom-in;Parent=FBtr0112614;parent_type=mRNA" - - - -	5586	10,219,613 – 10,219,701	+	5	88	73.03	-1.51	0.52	0.655775
4077	dm3.chr2R	10,239,308 – 10,239,367	- - - - - - - -	5587	10,239,308 – 10,239,367	-	6	66	72.27	-1.20	0.73	0.915054
4078	dm3.chr2R	10,245,768 – 10,245,938	- - - - - - - -	5588	10,245,768 – 10,245,870	+	9	106	65.76	-1.47	0.47	0.974627
				5589	10,245,768 – 10,245,870	-	9	106	65.76	-1.40	0.60	0.994526
				5590	10,245,797 – 10,245,909	+	10	115	66.11	-0.88	0.49	0.901038
				5591	10,245,797 – 10,245,909	-	10	115	66.11	-0.88	0.48	0.883384
				5592	10,245,833 – 10,245,938	+	11	113	66.74	-1.62	0.45	0.986832
				5593	10,245,833 – 10,245,938	-	11	113	66.74	-2.04	0.51	0.998744
4079	dm3.chr2R	10,246,178 – 10,246,281	- - - - - - - -	5594	10,246,178 – 10,246,281	-	10	113	50.59	-3.76	-0.00	0.994838
4080	dm3.chr2R	10,248,056 – 10,248,160	- - - - - - - -	5595	10,248,056 – 10,248,160	+	8	115	59.67	-2.23	0.21	0.855527
4080	dm3.chr2R	10,248,056 – 10,248,160	- - - - - - - -	5596	10,248,056 – 10,248,160	-	8	115	59.67	-3.28	0.19	0.993458
4081	dm3.chr2R	10,250,521 – 10,250,579	- - - - - - - -	5597	10,250,521 – 10,250,579	+	7	69	74.07	-2.60	0.48	0.982117
4081	dm3.chr2R	10,250,521 – 10,250,579	- - - - - - - -	5598	10,250,521 – 10,250,579	-	7	69	74.07	-2.55	0.49	0.981782
4082	dm3.chr2R	10,264,215 – 10,264,329	- - - - - - - -	5599	10,264,215 – 10,264,329	+	8	119	81.44	-2.19	0.49	0.670975
4082	dm3.chr2R	10,264,215 – 10,264,329	- - - - - - - -	5600	10,264,215 – 10,264,329	-	8	119	81.44	-2.11	0.47	0.517247
4083	dm3.chr2R	10,308,121 – 10,308,218	- - - - - - - -	5601	10,308,121 – 10,308,218	+	4	108	83.65	-2.21	0.65	0.789999
4084	dm3.chr2R	10,316,186 – 10,316,294	- - - - - - - -	5602	10,316,186 – 10,316,294	-	13	109	68.74	-0.90	0.43	0.721245
4085	dm3.chr2R	10,317,070 – 10,317,176	- - - intron="intron;ID=intron_CG10108:1_CG10108:2;Name=phyl-in;Parent=FBtr0087516;parent_type=mRNA" - - - -	5603	10,317,070 – 10,317,176	+	5	109	76.52	-1.62	0.57	0.593490
4086	dm3.chr2R	10,318,095 – 10,318,185	- - - intron="intron;ID=intron_CG10108:1_CG10108:2;Name=phyl-in;Parent=FBtr0087516;parent_type=mRNA" - - - -	5604	10,318,095 – 10,318,185	-	6	106	74.22	-4.72	0.39	0.999619
4087	dm3.chr2R	10,327,658 – 10,327,801	- - - intron="intron;ID=intron_FBgn0261613:1_FBgn0261613:2;Name=Oaz-in;Parent=FBtr0302927;parent_type=mRNA" - - - -	5605	10,327,658 – 10,327,801	-	7	145	88.72	-2.57	0.86	0.989206
4088	dm3.chr2R	10,329,213 – 10,329,303	- - - intron="intron;ID=intron_FBgn0261613:1_FBgn0261613:2;Name=Oaz-in;Parent=FBtr0302927;parent_type=mRNA" - - - -	5606	10,329,213 – 10,329,303	+	5	93	82.63	-2.69	0.75	0.986263
4089	dm3.chr2R	10,334,817 – 10,334,915	- - - intron="intron;ID=intron_FBgn0261613:2_FBgn0261613:3;Name=Oaz-in;Parent=FBtr0302927;parent_type=mRNA" - - - -	5607	10,334,817 – 10,334,915	+	10	111	76.98	-1.53	0.52	0.686358
4090	dm3.chr2R	10,344,005 – 10,344,068	- - - intron="intron;ID=intron_FBgn0261613:3_FBgn0261613:5;Name=Oaz-in;Parent=FBtr0302927;parent_type=mRNA" - - - -	5608	10,344,005 – 10,344,068	-	5	66	88.67	-1.10	0.91	0.583758
4091	dm3.chr2R	10,355,281 – 10,355,346	- - - - - - - -	5609	10,355,281 – 10,355,346	+	4	65	52.56	-1.08	0.40	0.893183
4091	dm3.chr2R	10,355,281 – 10,355,346	- - - - - - - -	5610	10,355,281 – 10,355,346	-	4	65	52.56	-0.95	0.64	0.994847
4092	dm3.chr2R	10,369,627 – 10,369,744	- - - intron="intron;ID=intron_CG10109:1_CG10109:2;Name=L-in;Parent=FBtr0087492;parent_type=mRNA" - - - -	5611	10,369,627 – 10,369,744	+	5	117	82.28	-2.35	0.61	0.893501
4093	dm3.chr2R	10,370,106 – 10,370,206	- - - intron="intron;ID=intron_CG10109:1_CG10109:2;Name=L-in;Parent=FBtr0087492;parent_type=mRNA" - - - -	5612	10,370,106 – 10,370,206	+	6	104	86.45	-1.91	0.65	0.525170
4094	dm3.chr2R	10,389,974 – 10,390,086	- - - intron="intron;ID=intron_CG10110:5_CG10110:2;Name=Cpsf160-in;Parent=FBtr0089258;parent_type=mRNA" - - - -	5613	10,389,974 – 10,390,086	+	8	120	67.19	-0.86	0.44	0.544627
4095	dm3.chr2R	10,397,696 – 10,397,862	- - CDS="CDS;ID=CDS_CG8787:20_498;Name=Asx-cds;Parent=FBtr0100154;parent_type=mRNA" - - - - -	5614	10,397,696 – 10,397,808	+	12	116	72.99	-1.09	0.56	0.866732
				5615	10,397,696 – 10,397,808	-	12	116	72.99	-1.27	0.50	0.833470
				5616	10,397,728 – 10,397,848	+	12	120	74.62	-1.03	0.56	0.766148
				5617	10,397,768 – 10,397,862	+	11	120	70.83	-1.14	0.50	0.597597
4096	dm3.chr2R	10,399,158 – 10,399,248	- - - - - - - -	5618	10,399,158 – 10,399,248	+	9	102	79.70	-2.21	0.76	0.990704
4096	dm3.chr2R	10,399,158 – 10,399,248	- - - - - - - -	5619	10,399,158 – 10,399,248	-	9	102	79.70	-2.75	0.61	0.993974
4097	dm3.chr2R	10,408,496 – 10,408,627	- - - - - - - -	5620	10,408,496 – 10,408,602	-	12	116	72.21	-0.51	0.80	0.895668
				5621	10,408,531 – 10,408,627	+	12	114	74.63	-1.04	0.73	0.876276
				5622	10,408,531 – 10,408,627	-	12	114	74.63	-1.19	0.74	0.927735
4098	dm3.chr2R	10,422,949 – 10,423,046	- - - intron="intron;ID=intron_CG10117:1_CG10117:2;Name=ttv-in;Parent=FBtr0087495;parent_type=mRNA" - - - -	5623	10,422,949 – 10,423,046	+	5	99	87.14	-1.18	0.88	0.612334
4099	dm3.chr2R	10,426,682 – 10,426,735	- - - intron="intron;ID=intron_CG10117:1_CG10117:2;Name=ttv-in;Parent=FBtr0087495;parent_type=mRNA" - - - -	5624	10,426,682 – 10,426,735	+	9	61	75.40	-1.75	0.61	0.956344
4100	dm3.chr2R	10,428,254 – 10,428,357	- - - intron="intron;ID=intron_CG10117:1_CG10117:2;Name=ttv-in;Parent=FBtr0087495;parent_type=mRNA" - - - -	5625	10,428,254 – 10,428,357	+	5	105	79.38	-0.93	0.82	0.518991
4101	dm3.chr2R	10,430,339 – 10,430,413	- - - intron="intron;ID=intron_CG10117:1_CG10117:2;Name=ttv-in;Parent=FBtr0087495;parent_type=mRNA" - - - -	5626	10,430,339 – 10,430,413	+	5	74	91.01	-2.13	0.91	0.965321
4102	dm3.chr2R	10,437,227 – 10,437,318	- - - intron="intron;ID=intron_CG10117:1_CG10117:2;Name=ttv-in;Parent=FBtr0087495;parent_type=mRNA" - - - -	5627	10,437,227 – 10,437,318	+	6	94	72.18	-1.91	0.43	0.781096
4102	dm3.chr2R	10,437,227 – 10,437,318		5628	10,437,227 – 10,437,318	-	6	94	72.18	-1.58	0.48	0.712528
4103	dm3.chr2R	10,441,285 – 10,441,338	- - - intron="intron;ID=intron_CG10117:2_CG10117:3;Name=ttv-in;Parent=FBtr0087495;parent_type=mRNA" - - - -	5629	10,441,285 – 10,441,338	+	3	53	94.97	-0.83	0.98	0.500000
4104	dm3.chr2R	10,453,796 – 10,453,865	- - - intron="intron;ID=intron_CG10117:5_CG10117:6;Name=ttv-in;Parent=FBtr0087495;parent_type=mRNA" - - - -	5630	10,453,796 – 10,453,865	+	7	71	77.92	-1.52	0.59	0.744143
4105	dm3.chr2R	10,454,391 – 10,454,506	- - - intron="intron;ID=intron_CG10117:5_CG10117:6;Name=ttv-in;Parent=FBtr0087495;parent_type=mRNA" - - - -	5631	10,454,391 – 10,454,506	-	6	118	83.27	-2.07	0.70	0.894312
4106	dm3.chr2R	10,460,544 – 10,460,635	- - - intron="intron;ID=intron_CG10119:1_CG10119:2;Name=LamC-in;Parent=FBtr0087512;parent_type=mRNA" - - - -	5632	10,460,544 – 10,460,635	-	6	98	85.57	-1.80	0.80	0.871643
4107	dm3.chr2R	10,466,901 – 10,466,985	- - - - - - - -	5633	10,466,901 – 10,466,985	+	7	84	76.85	-2.93	0.48	0.989625
4108	dm3.chr2R	10,468,807 – 10,468,865	- - - - - - - -	5634	10,468,807 – 10,468,865	+	5	58	93.45	-1.11	0.94	0.598922
4109	dm3.chr2R	10,469,442 – 10,469,534	- - - - - - - -	5635	10,469,442 – 10,469,534	+	8	113	62.08	-1.75	0.38	0.919618
4110	dm3.chr2R	10,469,734 – 10,469,796	- - - - - - - -	5636	10,469,734 – 10,469,796	+	8	62	87.73	-1.50	0.80	0.620159
4111	dm3.chr2R	10,513,346 – 10,513,449	- - - - - - - -	5637	10,513,346 – 10,513,449	-	12	115	77.77	-1.53	0.52	0.542742
4112	dm3.chr2R	10,532,658 – 10,532,751	- - - - - - - -	5638	10,532,658 – 10,532,751	+	6	96	77.28	-1.85	0.49	0.692288
4112	dm3.chr2R	10,532,658 – 10,532,751	- - - - - - - -	5639	10,532,658 – 10,532,751	-	6	96	77.28	-1.55	0.60	0.792123
4113	dm3.chr2R	10,546,077 – 10,546,148	- - CDS="CDS;ID=CDS_CG10143:1_529;Name=Adgf-E-cds;Parent=FBtr0087482;parent_type=mRNA" - - - - -	5640	10,546,077 – 10,546,148	+	7	71	61.23	-0.93	0.60	0.992086
4113	dm3.chr2R	10,546,077 – 10,546,148		5641	10,546,077 – 10,546,148	-	7	71	61.23	-1.34	0.56	0.996978
4114	dm3.chr2R	10,555,457 – 10,555,512	- - - - - - - -	5642	10,555,457 – 10,555,512	+	11	55	95.17	-2.24	0.91	0.960201
4114	dm3.chr2R	10,555,457 – 10,555,512	- - - - - - - -	5643	10,555,457 – 10,555,512	-	11	55	95.17	-1.44	0.99	0.918443
4115	dm3.chr2R	10,567,816 – 10,567,915	- - - intron="intron;ID=intron_CG10145:3_CG10145:4;Name=mspo-in;Parent=FBtr0087477;parent_type=mRNA" - - - -	5644	10,567,816 – 10,567,915	+	8	100	77.14	-1.63	0.50	0.587619
4116	dm3.chr2R	10,570,809 – 10,570,902	- - - intron="intron;ID=intron_CG10145:3_CG10145:4;Name=mspo-in;Parent=FBtr0087477;parent_type=mRNA" - - - -	5645	10,570,809 – 10,570,902	+	6	93	85.24	-1.94	0.93	0.978443
4116	dm3.chr2R	10,570,809 – 10,570,902		5646	10,570,809 – 10,570,902	-	6	93	85.24	-2.37	0.87	0.987058
4117	dm3.chr2R	10,579,005 – 10,579,107	- - - intron="intron;ID=intron_CG10145:1_CG10145:2;Name=mspo-in;Parent=FBtr0087477;parent_type=mRNA" - - - -	5647	10,579,005 – 10,579,107	+	7	118	69.59	-1.26	0.47	0.725298
4118	dm3.chr2R	10,584,970 – 10,585,064	- - - intron="intron;ID=intron_CG10145:1_CG10145:2;Name=mspo-in;Parent=FBtr0087477;parent_type=mRNA" - - - -	5648	10,584,970 – 10,585,064	+	10	107	76.15	-2.50	0.54	0.993733
4118	dm3.chr2R	10,584,970 – 10,585,064		5649	10,584,970 – 10,585,064	-	10	107	76.15	-1.13	0.75	0.927489
4119	dm3.chr2R	10,607,287 – 10,607,408	- - - - - - - -	5650	10,607,287 – 10,607,396	-	9	120	72.21	-0.63	0.59	0.587378
4119	dm3.chr2R	10,607,287 – 10,607,408	- - - - - - - -	5651	10,607,308 – 10,607,408	-	9	105	72.81	-1.63	0.47	0.888777
4120	dm3.chr2R	10,618,215 – 10,618,341	- - - - - - - -	5652	10,618,215 – 10,618,310	+	9	117	79.02	-1.88	0.52	0.685263
4120	dm3.chr2R	10,618,215 – 10,618,341	- - - - - - - -	5653	10,618,237 – 10,618,341	+	8	108	80.10	-1.54	0.53	0.545740
4121	dm3.chr2R	10,620,495 – 10,620,595	- - - - - - - -	5654	10,620,495 – 10,620,595	+	7	118	78.56	-2.00	0.59	0.912619
4121	dm3.chr2R	10,620,495 – 10,620,595	- - - - - - - -	5655	10,620,495 – 10,620,595	-	7	118	78.56	-1.64	0.55	0.597308
4122	dm3.chr2R	10,625,820 – 10,625,912	- - - - - - - -	5656	10,625,820 – 10,625,912	+	9	115	53.69	-2.54	0.07	0.616974
4123	dm3.chr2R	10,627,984 – 10,628,034	- - - - - - - -	5657	10,627,984 – 10,628,034	+	6	50	92.93	-1.62	0.84	0.591024
4123	dm3.chr2R	10,627,984 – 10,628,034	- - - - - - - -	5658	10,627,984 – 10,628,034	-	6	50	92.93	-1.12	1.00	0.865125
4124	dm3.chr2R	10,652,570 – 10,652,661	- - - intron="intron;ID=intron_FBgn0020767:5_FBgn0020767:4;Name=Spred-in;Parent=FBtr0087468;parent_type=mRNA" - - - -	5659	10,652,570 – 10,652,661	+	5	99	62.32	-1.02	0.50	0.884246
4125	dm3.chr2R	10,658,335 – 10,658,427	- - - intron="intron;ID=intron_FBgn0015602:1_FBgn0015602:4;Name=BEAF-32-in;Parent=FBtr0087441;parent_type=mRNA" - - - -	5660	10,658,335 – 10,658,427	+	9	101	69.49	-0.98	0.45	0.516001
4125	dm3.chr2R	10,658,335 – 10,658,427		5661	10,658,335 – 10,658,427	-	9	101	69.49	-1.35	0.42	0.716633
4126	dm3.chr2R	10,668,215 – 10,668,265	- - - intron="intron;ID=intron_FBgn0001319:10_FBgn0001319:9;Name=kn-in;Parent=FBtr0087465,FBtr0112809,FBtr0112810,FBtr0301400;parent_type=mRNA" - - - -	5662	10,668,215 – 10,668,265	+	4	50	95.33	-1.21	0.97	0.746869
4127	dm3.chr2R	10,673,793 – 10,673,927	- - - intron="intron;ID=intron_FBgn0001319:11_FBgn0001319:10;Name=kn-in;Parent=FBtr0087465,FBtr0112809,FBtr0112810,FBtr0301400;parent_type=mRNA" - - - -	5663	10,673,793 – 10,673,889	+	8	113	63.98	-2.41	0.37	0.986228
				5664	10,673,793 – 10,673,889	-	8	113	63.98	-1.14	0.53	0.930240
				5665	10,673,817 – 10,673,927	-	7	113	69.34	-0.49	0.61	0.523730
4128	dm3.chr2R	10,684,459 – 10,684,549	- - - intron="intron;ID=intron_FBgn0001319:15_FBgn0001319:13;Name=kn-in;Parent=FBtr0087465,FBtr0112809,FBtr0301400;parent_type=mRNA" - - - -	5666	10,684,459 – 10,684,549	-	10	92	88.92	-1.11	0.86	0.531976
4129	dm3.chr2R	10,685,132 – 10,685,242	- - - intron="intron;ID=intron_FBgn0001319:15_FBgn0001319:13;Name=kn-in;Parent=FBtr0087465,FBtr0112809,FBtr0301400;parent_type=mRNA" - - - -	5667	10,685,132 – 10,685,242	-	5	110	91.18	-1.54	0.83	0.533445
4130	dm3.chr2R	10,686,828 – 10,686,920	- - - intron="intron;ID=intron_FBgn0001319:16_FBgn0001319:14;Name=kn-in;Parent=FBtr0112810;parent_type=mRNA" - - - -	5668	10,686,828 – 10,686,920	+	7	103	69.42	-0.99	0.57	0.866060
4131	dm3.chr2R	10,702,700 – 10,702,791	- - - - - - - -	5669	10,702,700 – 10,702,791	+	9	118	75.08	-1.03	0.61	0.520530
4132	dm3.chr2R	10,704,334 – 10,704,425	- - - - - - - -	5670	10,704,334 – 10,704,425	+	11	113	78.52	-2.19	0.51	0.905800
4133	dm3.chr2R	10,720,637 – 10,720,731	- - - - - - - -	5671	10,720,637 – 10,720,731	+	6	97	63.28	-1.17	0.42	0.812249
4134	dm3.chr2R	10,722,052 – 10,722,153	- - - - - - - -	5672	10,722,052 – 10,722,153	-	6	110	87.95	-1.80	0.73	0.578155
4135	dm3.chr2R	10,726,808 – 10,726,893	- - - - - - - -	5673	10,726,808 – 10,726,893	-	12	85	97.59	-1.72	0.86	0.500000
4136	dm3.chr2R	10,735,621 – 10,735,700	- - - intron="intron;ID=intron_CG10209:1_CG10209:2;Name=CG10209-in;Parent=FBtr0087462;parent_type=mRNA" - - - -	5674	10,735,621 – 10,735,700	+	6	90	73.24	-2.89	0.44	0.992093
4136	dm3.chr2R	10,735,621 – 10,735,700		5675	10,735,621 – 10,735,700	-	6	90	73.24	-2.45	0.39	0.920372
4137	dm3.chr2R	10,746,706 – 10,746,802	- - - intron="intron;ID=intron_FBgn0053505:2_FBgn0053505:1;Name=U3-55K-in;Parent=FBtr0091445;parent_type=mRNA" - - - -	5676	10,746,706 – 10,746,802	-	12	105	61.01	-0.21	0.54	0.886497
4138	dm3.chr2R	10,749,516 – 10,749,622	- - CDS="CDS;ID=CDS_FBgn0022063:1_525;Name=Pcf11-cds;Parent=FBtr0302560;parent_type=mRNA" - - - - -	5677	10,749,516 – 10,749,622	+	12	114	70.68	-1.81	0.31	0.680634
4139	dm3.chr2R	10,749,680 – 10,749,743	- - - - - - - -	5678	10,749,680 – 10,749,743	-	10	70	70.44	-1.25	0.55	0.925575
4140	dm3.chr2R	10,752,200 – 10,752,258	- - CDS="CDS;ID=CDS_FBgn0022063:3_525;Name=Pcf11-cds;Parent=FBtr0302560;parent_type=mRNA" - - - - -	5679	10,752,200 – 10,752,258	+	10	67	66.58	-1.21	0.42	0.752877
4141	dm3.chr2R	10,771,626 – 10,771,764	- - - - - - - -	5680	10,771,626 – 10,771,764	+	4	141	75.52	-2.87	0.46	0.959093
4142	dm3.chr2R	10,791,086 – 10,791,225	- - CDS="CDS;ID=CDS_FBgn0027596:8_621;Name=CG10249-cds;Parent=FBtr0303758;parent_type=mRNA" intron="intron;ID=intron_FBgn0027596:8_FBgn0027596:7;Name=CG10249-in;Parent=FBtr0303758;parent_type=mRNA" - - - -	5681	10,791,086 – 10,791,191	+	12	108	66.95	-1.38	0.51	0.990252
				5682	10,791,086 – 10,791,191	-	12	108	66.95	-0.89	0.50	0.934164
				5683	10,791,116 – 10,791,225	+	11	116	78.45	-1.37	0.65	0.843149
				5684	10,791,116 – 10,791,225	-	11	116	78.45	-0.91	0.75	0.743177
4143	dm3.chr2R	10,793,233 – 10,793,340	- - CDS="CDS;ID=CDS_FBgn0027596:10_658;Name=CG10249-cds;Parent=FBtr0303757;parent_type=mRNA" - - - - -	5685	10,793,233 – 10,793,340	-	12	113	73.37	-1.46	0.40	0.589919
4144	dm3.chr2R	10,793,930 – 10,793,985	- - - - - - - -	5686	10,793,930 – 10,793,985	+	4	55	64.55	-0.79	0.54	0.595172
4145	dm3.chr2R	10,794,278 – 10,794,350	- - - - - - - -	5687	10,794,278 – 10,794,350	-	9	74	60.96	-0.48	0.42	0.582494
4146	dm3.chr2R	10,804,560 – 10,804,651	- - - - - - - -	5688	10,804,560 – 10,804,651	+	6	97	81.21	-1.57	0.65	0.506830
4147	dm3.chr2R	10,808,996 – 10,809,047	- - - - - - - -	5689	10,808,996 – 10,809,047	+	8	61	80.54	-1.23	0.75	0.671818
4148	dm3.chr2R	10,813,362 – 10,813,452	- - - - - - - -	5690	10,813,362 – 10,813,452	-	6	112	62.51	-1.78	0.31	0.570889
4149	dm3.chr2R	10,825,915 – 10,826,014	- - CDS="CDS;ID=CDS_FBgn0033984:5_623;Name=Lap1-cds;Parent=FBtr0087407,FBtr0303759;parent_type=mRNA" - - - - -	5691	10,825,915 – 10,826,014	+	7	99	87.35	-2.26	0.58	0.592836
4150	dm3.chr2R	10,842,519 – 10,842,575	- - - - - - - -	5692	10,842,519 – 10,842,575	+	11	56	96.95	-2.28	1.00	0.988580
4151	dm3.chr2R	10,843,814 – 10,843,921	- - - - - - - -	5693	10,843,814 – 10,843,921	-	5	127	69.63	-1.88	0.53	0.942203
4152	dm3.chr2R	10,854,991 – 10,855,041	- - - intron="intron;ID=intron_CG12424:8_CG12424:2;Name=CG12424-in;Parent=FBtr0087411;parent_type=mRNA" - - - -	5694	10,854,991 – 10,855,041	+	7	61	64.73	-1.01	0.75	0.968655
4152	dm3.chr2R	10,854,991 – 10,855,041		5695	10,854,991 – 10,855,041	-	7	61	64.73	-1.22	0.62	0.959925
4153	dm3.chr2R	10,855,154 – 10,855,259	- - - intron="intron;ID=intron_CG12424:8_CG12424:2;Name=CG12424-in;Parent=FBtr0087411;parent_type=mRNA" - - - -	5696	10,855,154 – 10,855,259	+	5	106	89.25	-2.17	0.86	0.943223
4154	dm3.chr2R	10,855,401 – 10,855,453	- - - intron="intron;ID=intron_CG12424:8_CG12424:2;Name=CG12424-in;Parent=FBtr0087411;parent_type=mRNA" - - - -	5697	10,855,401 – 10,855,453	+	6	56	76.92	-1.22	0.60	0.521947
4155	dm3.chr2R	10,856,726 – 10,856,821	- - - intron="intron;ID=intron_CG12424:8_CG12424:2;Name=CG12424-in;Parent=FBtr0087411;parent_type=mRNA" - - - -	5698	10,856,726 – 10,856,821	-	5	95	99.37	-1.42	0.97	0.765062
4156	dm3.chr2R	10,859,535 – 10,859,640	- - CDS="CDS;ID=CDS_CG12424:2_504;Name=CG12424-cds;Parent=FBtr0087409,FBtr0087410,FBtr0087411;parent_type=mRNA" - - - - -	5699	10,859,535 – 10,859,640	+	11	117	75.97	-1.14	0.63	0.793831
4157	dm3.chr2R	10,863,206 – 10,863,296	- - - intron="intron;ID=intron_CG12424:2_CG12424:3;Name=CG12424-in;Parent=FBtr0087409,FBtr0087410,FBtr0087411;parent_type=mRNA" - - - -	5700	10,863,206 – 10,863,296	+	6	91	67.62	-1.87	0.47	0.974440
4158	dm3.chr2R	10,865,342 – 10,865,435	- - CDS="CDS;ID=CDS_CG12424:4_504;Name=CG12424-cds;Parent=FBtr0087409,FBtr0087410,FBtr0087411;parent_type=mRNA" - - - - -	5701	10,865,342 – 10,865,435	+	10	120	75.56	-1.22	0.61	0.633717
4159	dm3.chr2R	10,871,813 – 10,871,915	FBnoncoding="tRNA;ID=FBtr0087425;Name=tRNA:CR30241-RA;Parent=FBgn0050241;Alias=CR30241-RA;Dbxref=FlyBase_Annotation_IDs:CR30241-RA;score_text=Weakly" tRNAscann="Leu_chr2R_trna74" - intron="intron;ID=intron_FBgn0033988:1_FBgn0033988:2;Name=pcs-in;Parent=FBtr0301507;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB011050621.1/467-540\|1.2e-34" - - -	5702	10,871,813 – 10,871,915	+	11	115	86.76	-1.95	0.90	0.976595
4159	dm3.chr2R	10,871,813 – 10,871,915		5703	10,871,813 – 10,871,915	-	11	115	86.76	-1.34	0.98	0.946841
4160	dm3.chr2R	10,872,987 – 10,873,142	- - - intron="intron;ID=intron_FBgn0033988:1_FBgn0033988:2;Name=pcs-in;Parent=FBtr0301507;parent_type=mRNA" - - - -	5704	10,872,987 – 10,873,084	-	7	115	68.28	-2.21	0.37	0.862985
4160	dm3.chr2R	10,872,987 – 10,873,142		5705	10,873,050 – 10,873,142	-	5	101	94.98	-2.14	1.00	0.986386
4161	dm3.chr2R	10,893,147 – 10,893,240	- - - - - - - -	5706	10,893,147 – 10,893,240	+	10	120	76.13	-0.79	0.71	0.521812
4162	dm3.chr2R	10,916,496 – 10,916,594	- - - - - - - -	5707	10,916,496 – 10,916,594	-	8	109	76.71	-1.45	0.54	0.575406
4163	dm3.chr2R	10,923,458 – 10,923,516	- - - - - - - -	5708	10,923,458 – 10,923,516	-	7	62	68.28	-1.07	0.55	0.909713
4164	dm3.chr2R	10,928,665 – 10,928,755	- - - - - - - -	5709	10,928,665 – 10,928,755	+	3	92	82.42	-2.80	0.82	0.991359
4164	dm3.chr2R	10,928,665 – 10,928,755	- - - - - - - -	5710	10,928,665 – 10,928,755	-	3	92	82.42	-2.06	0.70	0.748696
4165	dm3.chr2R	10,940,751 – 10,940,846	- - - - - - - -	5711	10,940,751 – 10,940,846	+	6	112	71.52	-2.49	0.52	0.991718
4166	dm3.chr2R	10,941,999 – 10,942,109	- - - - - - - -	5712	10,941,999 – 10,942,109	+	12	114	75.68	-2.66	0.40	0.981254
4167	dm3.chr2R	10,942,419 – 10,942,520	- - - - - - - -	5713	10,942,419 – 10,942,520	-	11	114	73.54	-2.24	0.32	0.655010
4168	dm3.chr2R	10,945,857 – 10,946,013	- - - - - - - -	5714	10,945,857 – 10,945,955	-	8	104	58.82	-2.38	0.27	0.986847
				5715	10,945,894 – 10,945,990	-	8	100	55.86	-1.68	0.26	0.876873
				5716	10,945,916 – 10,946,013	-	5	98	74.38	-1.39	0.55	0.584145
4169	dm3.chr2R	10,946,413 – 10,946,508	- - - - - - - -	5717	10,946,413 – 10,946,508	+	11	104	64.50	-0.19	0.49	0.500000
4170	dm3.chr2R	10,950,083 – 10,950,308	- - - - - - - -	5718	10,950,083 – 10,950,211	+	12	159	72.96	-1.38	0.52	0.696370
				5719	10,950,083 – 10,950,211	-	12	159	72.96	-1.48	0.47	0.586184
				5720	10,950,211 – 10,950,308	-	3	101	95.38	-2.08	0.86	0.801066
4171	dm3.chr2R	10,954,716 – 10,954,819	- - - - - - - -	5721	10,954,716 – 10,954,819	-	11	110	69.76	-1.36	0.51	0.962075
4172	dm3.chr2R	10,966,636 – 10,966,762	- - - - - - - -	5722	10,966,636 – 10,966,762	-	6	143	69.05	-1.28	0.47	0.662642
4173	dm3.chr2R	10,967,225 – 10,967,322	- - - - - - - -	5723	10,967,225 – 10,967,322	+	8	114	71.46	-0.84	0.65	0.697137
4174	dm3.chr2R	10,970,532 – 10,970,632	- - - - - - - -	5724	10,970,532 – 10,970,632	+	6	113	85.49	-3.37	0.64	0.992836
4174	dm3.chr2R	10,970,532 – 10,970,632	- - - - - - - -	5725	10,970,532 – 10,970,632	-	6	113	85.49	-2.54	0.56	0.781670
4175	dm3.chr2R	10,985,522 – 10,985,612	- - - - - - - -	5726	10,985,522 – 10,985,612	+	5	101	76.33	-2.07	0.48	0.700816
4175	dm3.chr2R	10,985,522 – 10,985,612	- - - - - - - -	5727	10,985,522 – 10,985,612	-	5	101	76.33	-1.80	0.57	0.773041
4176	dm3.chr2R	10,991,513 – 10,991,608	- - - - - - - -	5728	10,991,513 – 10,991,608	+	7	117	72.50	-1.61	0.57	0.874111
4177	dm3.chr2R	11,006,511 – 11,006,628	- - - intron="intron;ID=intron_FBgn0015371:1_FBgn0015371:3;Name=chn-in;Parent=FBtr0111006,FBtr0111007,FBtr0087416,FBtr0305214,FBtr0305217;parent_type=mRNA" - - - -	5729	11,006,511 – 11,006,628	-	8	132	72.91	-1.45	0.50	0.692576
4178	dm3.chr2R	11,019,020 – 11,019,122	- - - intron="intron;ID=intron_FBgn0015371:2_FBgn0015371:3;Name=chn-in;Parent=FBtr0087415,FBtr0305213,FBtr0305215,FBtr0305216;parent_type=mRNA" - - - -	5730	11,019,020 – 11,019,122	+	6	112	90.15	-1.16	0.95	0.780387
4179	dm3.chr2R	11,020,318 – 11,020,417	- - - intron="intron;ID=intron_FBgn0015371:2_FBgn0015371:3;Name=chn-in;Parent=FBtr0087415,FBtr0305213,FBtr0305215,FBtr0305216;parent_type=mRNA" - - - -	5731	11,020,318 – 11,020,417	+	6	109	64.95	-0.53	0.49	0.500000
4180	dm3.chr2R	11,024,232 – 11,024,394	- - - intron="intron;ID=intron_FBgn0015371:2_FBgn0015371:3;Name=chn-in;Parent=FBtr0087415,FBtr0305213,FBtr0305215,FBtr0305216;parent_type=mRNA" - - - -	5732	11,024,232 – 11,024,341	+	9	120	69.46	-1.47	0.38	0.622249
4180	dm3.chr2R	11,024,232 – 11,024,394		5733	11,024,303 – 11,024,394	+	8	111	66.00	-0.78	0.64	0.935385
4181	dm3.chr2R	11,024,605 – 11,024,715	- - - intron="intron;ID=intron_FBgn0015371:2_FBgn0015371:3;Name=chn-in;Parent=FBtr0087415,FBtr0305213,FBtr0305215,FBtr0305216;parent_type=mRNA" - - - -	5734	11,024,605 – 11,024,715	-	5	112	73.42	-0.93	0.67	0.621781
4182	dm3.chr2R	11,025,850 – 11,025,968	- - CDS="CDS;ID=CDS_FBgn0015371:3_670;Name=chn-cds;Parent=FBtr0305215;parent_type=mRNA" - - - - -	5735	11,025,850 – 11,025,968	-	12	126	77.38	-1.67	0.70	0.978552
4183	dm3.chr2R	11,032,644 – 11,032,762	- - CDS="CDS;ID=CDS_FBgn0085215:2_578;Name=CG34186-cds;Parent=FBtr0112379;parent_type=mRNA" - - - - -	5736	11,032,644 – 11,032,762	-	13	118	72.92	-0.42	0.58	0.538525
4184	dm3.chr2R	11,048,972 – 11,049,053	- - - intron="intron;ID=intron_FBgn0013467:1_FBgn0013467:3;Name=igl-in;Parent=FBtr0087361;parent_type=mRNA" - - - -	5737	11,048,972 – 11,049,053	+	11	85	71.07	-1.64	0.55	0.986702
4185	dm3.chr2R	11,051,415 – 11,051,514	- - - intron="intron;ID=intron_FBgn0013467:1_FBgn0013467:3;Name=igl-in;Parent=FBtr0087361;parent_type=mRNA" - - - -	5738	11,051,415 – 11,051,514	+	11	118	86.55	-0.94	0.87	0.500000
4186	dm3.chr2R	11,051,855 – 11,051,947	- - - intron="intron;ID=intron_FBgn0013467:1_FBgn0013467:3;Name=igl-in;Parent=FBtr0087361;parent_type=mRNA" - - - -	5739	11,051,855 – 11,051,947	+	9	103	61.38	-1.19	0.32	0.595438
4187	dm3.chr2R	11,056,227 – 11,056,325	- - - intron="intron;ID=intron_FBgn0013467:2_FBgn0013467:3;Name=igl-in;Parent=FBtr0087362;parent_type=mRNA" - - - -	5740	11,056,227 – 11,056,325	+	8	116	84.82	-1.75	0.73	0.707776
4188	dm3.chr2R	11,057,478 – 11,057,588	- - - intron="intron;ID=intron_FBgn0013467:2_FBgn0013467:3;Name=igl-in;Parent=FBtr0087362;parent_type=mRNA" - - - -	5741	11,057,478 – 11,057,588	+	11	117	80.76	-1.62	0.55	0.546249
4188	dm3.chr2R	11,057,478 – 11,057,588		5742	11,057,478 – 11,057,588	-	11	117	80.76	-0.99	0.74	0.582165
4189	dm3.chr2R	11,087,842 – 11,087,944	- - - - - - - -	5743	11,087,842 – 11,087,944	+	13	115	71.46	-0.85	0.61	0.932319
4190	dm3.chr2R	11,100,341 – 11,100,436	- - CDS="CDS;ID=CDS_CG8092:1_619;Name=row-cds;Parent=FBtr0087402,FBtr0087403;parent_type=mRNA" - - - - -	5744	11,100,341 – 11,100,436	-	14	118	61.54	-0.83	0.38	0.650000
4191	dm3.chr2R	11,105,810 – 11,105,861	- - - - - - - -	5745	11,105,810 – 11,105,861	+	5	56	67.84	-1.63	0.40	0.690231
4191	dm3.chr2R	11,105,810 – 11,105,861	- - - - - - - -	5746	11,105,810 – 11,105,861	-	5	56	67.84	-1.86	0.42	0.891616
4192	dm3.chr2R	11,128,953 – 11,129,005	- - - - - - - -	5747	11,128,953 – 11,129,005	+	5	60	90.18	-1.52	0.88	0.721347
4193	dm3.chr2R	11,133,780 – 11,133,987	- - - - - - - -	5748	11,133,780 – 11,133,879	-	6	104	70.07	-1.67	0.38	0.605007
				5749	11,133,879 – 11,133,987	+	6	116	80.94	-2.03	0.67	0.934390
				5750	11,133,879 – 11,133,987	-	6	116	80.94	-1.33	0.72	0.671733
4194	dm3.chr2R	11,165,096 – 11,165,165	- - - intron="intron;ID=intron_FBgn0083959:25_FBgn0083959:24;Name=trpm-in;Parent=FBtr0110831,FBtr0110832,FBtr0110833,FBtr0114580,FBtr0113485;parent_type=mRNA" - - - -	5751	11,165,096 – 11,165,165	-	5	69	67.10	-0.89	0.52	0.666566
4195	dm3.chr2R	11,176,215 – 11,176,331	- - - - - - - -	5752	11,176,215 – 11,176,331	-	3	117	96.57	-2.09	0.92	0.917880
4196	dm3.chr2R	11,187,722 – 11,187,818	- - - - - - - -	5753	11,187,722 – 11,187,818	-	7	120	69.62	-2.87	0.36	0.985874
4197	dm3.chr2R	11,189,415 – 11,189,518	- - - - - - - -	5754	11,189,415 – 11,189,518	+	6	111	73.00	-2.09	0.45	0.923091
4197	dm3.chr2R	11,189,415 – 11,189,518	- - - - - - - -	5755	11,189,415 – 11,189,518	-	6	111	73.00	-1.53	0.68	0.970092
4198	dm3.chr2R	11,196,912 – 11,196,971	- - - - - - - -	5756	11,196,912 – 11,196,971	+	3	59	94.92	-2.24	0.94	0.967648
4199	dm3.chr2R	11,209,587 – 11,209,656	- - - - - - - -	5757	11,209,587 – 11,209,656	-	6	72	78.00	-3.04	0.37	0.940356
4200	dm3.chr2R	11,218,249 – 11,218,386	- - - - - - - -	5758	11,218,249 – 11,218,386	+	6	139	71.10	-1.48	0.61	0.972725
4200	dm3.chr2R	11,218,249 – 11,218,386	- - - - - - - -	5759	11,218,249 – 11,218,386	-	6	139	71.10	-1.71	0.54	0.971142
4201	dm3.chr2R	11,249,205 – 11,249,277	- - - intron="intron;ID=intron_CG8166:5_CG8166:6;Name=unc-5-in;Parent=FBtr0087382;parent_type=mRNA" - - - -	5760	11,249,205 – 11,249,277	-	11	72	58.66	-0.87	0.37	0.862241
4202	dm3.chr2R	11,254,799 – 11,254,908	- - - - - - - -	5761	11,254,799 – 11,254,895	-	6	106	71.33	-1.71	0.46	0.862783
4202	dm3.chr2R	11,254,799 – 11,254,908	- - - - - - - -	5762	11,254,807 – 11,254,908	-	5	106	75.05	-4.01	0.43	0.999034
4203	dm3.chr2R	11,282,374 – 11,282,424	- - - - - - - -	5763	11,282,374 – 11,282,424	+	4	50	91.67	-1.91	0.81	0.681837
4204	dm3.chr2R	11,293,123 – 11,293,217	- - - - - - - -	5764	11,293,123 – 11,293,217	+	10	116	73.07	-1.16	0.51	0.551119
4205	dm3.chr2R	11,299,789 – 11,299,901	- - - intron="intron;ID=intron_FBgn0262868:1_FBgn0262868:3;Name=CG43223-in;Parent=FBtr0112587;parent_type=mRNA" - - - -	5765	11,299,789 – 11,299,901	+	6	121	78.54	-1.44	0.59	0.500000
4206	dm3.chr2R	11,306,478 – 11,306,577	- - - intron="intron;ID=intron_FBgn0262868:3_FBgn0262868:4;Name=CG43223-in;Parent=FBtr0112587;parent_type=mRNA" - - - -	5766	11,306,478 – 11,306,577	-	10	114	66.18	-1.71	0.37	0.891035
4207	dm3.chr2R	11,313,592 – 11,313,692	- - - intron="intron;ID=intron_FBgn0262868:12_FBgn0262868:14;Name=CG43223-in;Parent=FBtr0112589;parent_type=mRNA" - - - -	5767	11,313,592 – 11,313,692	+	6	100	78.80	-1.04	0.70	0.567598
4208	dm3.chr2R	11,321,757 – 11,321,870	- - - - - - - -	5768	11,321,757 – 11,321,870	-	6	121	76.38	-1.10	0.60	0.536539
4209	dm3.chr2R	11,329,882 – 11,329,972	- - - - - - - -	5769	11,329,882 – 11,329,972	-	8	106	73.20	-1.98	0.37	0.684862
4210	dm3.chr2R	11,331,915 – 11,332,021	- - - - - - - -	5770	11,331,915 – 11,332,021	-	5	106	72.99	-1.28	0.58	0.759928
4211	dm3.chr2R	11,335,889 – 11,335,979	- - - - - - - -	5771	11,335,889 – 11,335,979	-	9	117	54.50	-1.33	0.27	0.570722
4212	dm3.chr2R	11,336,131 – 11,336,223	- - - - - - - -	5772	11,336,131 – 11,336,223	+	7	105	75.10	-1.46	0.50	0.534264
4213	dm3.chr2R	11,337,380 – 11,337,470	- - - - - - - -	5773	11,337,380 – 11,337,470	-	6	107	73.33	-1.69	0.46	0.642522
4214	dm3.chr2R	11,356,740 – 11,356,831	- - - - - - - -	5774	11,356,740 – 11,356,831	-	13	103	73.44	-1.10	0.52	0.686588
4215	dm3.chr2R	11,365,268 – 11,365,395	- - - intron="intron;ID=intron_CG8180:1_CG8180:2;Name=CG8180-in;Parent=FBtr0087359;parent_type=mRNA" - - - -	5775	11,365,268 – 11,365,395	+	6	137	71.39	-1.63	0.47	0.846715
4216	dm3.chr2R	11,366,180 – 11,366,273	- - - intron="intron;ID=intron_CG8180:1_CG8180:2;Name=CG8180-in;Parent=FBtr0087359;parent_type=mRNA" - - - -	5776	11,366,180 – 11,366,273	-	4	103	75.17	-1.59	0.75	0.913321
4217	dm3.chr2R	11,370,417 – 11,370,514	- - - - - - - -	5777	11,370,417 – 11,370,514	-	3	110	89.09	-1.03	0.93	0.549565
4218	dm3.chr2R	11,396,748 – 11,396,847	- - - - - - - -	5778	11,396,748 – 11,396,847	+	5	106	85.73	-2.25	0.78	0.944541
4219	dm3.chr2R	11,440,789 – 11,440,887	- - - - - - - -	5779	11,440,789 – 11,440,887	-	7	98	77.25	-1.57	0.71	0.959928
4220	dm3.chr2R	11,444,733 – 11,444,834	- - - intron="intron;ID=intron_FBgn0034031:6_FBgn0034031:10;Name=CG12963-in;Parent=FBtr0087337;parent_type=mRNA" - - - -	5780	11,444,733 – 11,444,834	-	4	111	78.00	-1.98	0.57	0.705052
4221	dm3.chr2R	11,467,951 – 11,468,045	- - - - - - - -	5781	11,467,951 – 11,468,045	-	9	117	67.89	-1.16	0.72	0.987707
4222	dm3.chr2R	11,475,524 – 11,475,625	- - - - - - - -	5782	11,475,524 – 11,475,625	+	7	103	77.79	-1.81	0.45	0.555571
4223	dm3.chr2R	11,475,732 – 11,475,783	- - - - - - - -	5783	11,475,732 – 11,475,783	+	7	53	87.01	-2.73	0.60	0.878221
4223	dm3.chr2R	11,475,732 – 11,475,783	- - - - - - - -	5784	11,475,732 – 11,475,783	-	7	53	87.01	-1.83	0.80	0.826758
4224	dm3.chr2R	11,482,870 – 11,482,970	- - - - - - - -	5785	11,482,870 – 11,482,970	+	4	100	84.93	-1.94	0.75	0.771697
4225	dm3.chr2R	11,488,680 – 11,488,781	- - - - - - - -	5786	11,488,680 – 11,488,781	-	9	105	80.11	-2.61	0.45	0.950382
4226	dm3.chr2R	11,492,379 – 11,492,481	- - - - - - - -	5787	11,492,379 – 11,492,481	+	5	102	75.15	-2.13	0.80	0.994395
4227	dm3.chr2R	11,495,732 – 11,495,831	- - - - - - - -	5788	11,495,732 – 11,495,831	+	12	121	62.96	-1.81	0.26	0.702670
4228	dm3.chr2R	11,499,418 – 11,499,513	- - - - - - - -	5789	11,499,418 – 11,499,513	+	6	95	60.14	-0.98	0.40	0.810861
4229	dm3.chr2R	11,520,882 – 11,521,042	- - - intron="intron;ID=intron_FBgn0260429:2_FBgn0260429:3;Name=CG42524-in;Parent=FBtr0300853,FBtr0304712;parent_type=mRNA" - - - -	5790	11,520,882 – 11,520,974	+	8	106	62.40	-2.08	0.22	0.632124
				5791	11,520,918 – 11,521,013	+	8	111	69.55	-1.47	0.39	0.506880
				5792	11,520,950 – 11,521,042	+	9	116	64.43	-2.27	0.29	0.902961
				5793	11,520,950 – 11,521,042	-	9	116	64.43	-2.00	0.34	0.916889
4230	dm3.chr2R	11,550,367 – 11,550,459	- - CDS="CDS;ID=CDS_FBgn0023441:3_636;Name=fus-cds;Parent=FBtr0087346,FBtr0087343,FBtr0087344;parent_type=mRNA" - - - - -	5794	11,550,367 – 11,550,459	+	7	98	73.45	-1.07	0.60	0.615503
4231	dm3.chr2R	11,553,955 – 11,554,021	- - - intron="intron;ID=intron_FBgn0023441:14_FBgn0023441:13;Name=fus-in;Parent=FBtr0087346,FBtr0087343,FBtr0087344,FBtr0087345,FBtr0302330;parent_type=mRNA" - - - -	5795	11,553,955 – 11,554,021	+	8	71	65.07	-2.19	0.26	0.831861
4232	dm3.chr2R	11,556,647 – 11,556,715	- - - intron="intron;ID=intron_FBgn0023441:15_FBgn0023441:14;Name=fus-in;Parent=FBtr0087346,FBtr0087343,FBtr0087344,FBtr0087345,FBtr0302330;parent_type=mRNA" - - - -	5796	11,556,647 – 11,556,715	+	3	72	93.06	-2.61	1.01	0.995751
4232	dm3.chr2R	11,556,647 – 11,556,715		5797	11,556,647 – 11,556,715	-	3	72	93.06	-2.10	0.93	0.954727
4233	dm3.chr2R	11,587,168 – 11,587,276	- - - - - - - -	5798	11,587,168 – 11,587,276	-	7	120	64.53	-1.92	0.36	0.906649
4234	dm3.chr2R	11,590,255 – 11,590,346	- - - - - - - -	5799	11,590,255 – 11,590,346	+	11	92	76.72	-1.03	0.61	0.709980
4235	dm3.chr2R	11,602,272 – 11,602,371	- - - - - - - -	5800	11,602,272 – 11,602,371	+	9	112	70.13	-1.66	0.43	0.874923
4236	dm3.chr2R	11,602,538 – 11,602,655	- - - - - - - -	5801	11,602,538 – 11,602,628	+	10	108	72.60	-0.81	0.73	0.871104
4236	dm3.chr2R	11,602,538 – 11,602,655	- - - - - - - -	5802	11,602,553 – 11,602,655	+	10	114	71.01	-0.92	0.67	0.872518
4237	dm3.chr2R	11,604,927 – 11,604,981	- - - - - - - -	5803	11,604,927 – 11,604,981	+	11	69	81.16	-1.89	0.75	0.919376
4238	dm3.chr2R	11,613,218 – 11,613,322	- - - - - - - -	5804	11,613,218 – 11,613,322	-	3	104	74.75	-2.68	0.36	0.528752
4239	dm3.chr2R	11,616,685 – 11,616,781	- - - intron="intron;ID=intron_FBgn0050089:1_FBgn0050089:2;Name=CG30089-in;Parent=FBtr0087285;parent_type=mRNA" - - - -	5805	11,616,685 – 11,616,781	+	9	101	88.11	-1.96	0.80	0.886280
4239	dm3.chr2R	11,616,685 – 11,616,781		5806	11,616,685 – 11,616,781	-	9	101	88.11	-3.95	0.90	0.999006
4240	dm3.chr2R	11,620,314 – 11,620,431	- - CDS="CDS;ID=CDS_FBgn0050089:2_573;Name=CG30089-cds;Parent=FBtr0087285;parent_type=mRNA" - - - - -	5807	11,620,314 – 11,620,431	-	6	117	79.49	-1.54	0.67	0.829431
4241	dm3.chr2R	11,622,307 – 11,622,406	- - - intron="intron;ID=intron_FBgn0050089:2_FBgn0050089:3;Name=CG30089-in;Parent=FBtr0087285;parent_type=mRNA" - - - -	5808	11,622,307 – 11,622,406	+	12	113	71.91	-0.92	0.46	0.526085
4241	dm3.chr2R	11,622,307 – 11,622,406		5809	11,622,307 – 11,622,406	-	12	113	71.91	-1.54	0.38	0.709081
4242	dm3.chr2R	11,641,180 – 11,641,277	- - - intron="intron;ID=intron_FBgn0050089:3_FBgn0050089:4;Name=CG30089-in;Parent=FBtr0087285;parent_type=mRNA" - - - -	5810	11,641,180 – 11,641,277	+	7	100	73.79	-1.88	0.54	0.971574
4243	dm3.chr2R	11,645,953 – 11,646,009	- - - intron="intron;ID=intron_FBgn0050089:5_FBgn0050089:6;Name=CG30089-in;Parent=FBtr0087285;parent_type=mRNA" - - - -	5811	11,645,953 – 11,646,009	+	5	56	97.14	-2.18	0.83	0.730459
4244	dm3.chr2R	11,646,212 – 11,646,305	- - - intron="intron;ID=intron_FBgn0050089:6_FBgn0050089:7;Name=CG30089-in;Parent=FBtr0087285;parent_type=mRNA" - - - -	5812	11,646,212 – 11,646,305	-	11	118	65.54	-1.07	0.48	0.864332
4245	dm3.chr2R	11,652,838 – 11,653,011	- - - intron="intron;ID=intron_FBgn0083919:8_FBgn0083919:5;Name=Zasp52-in;Parent=FBtr0111048,FBtr0100387,FBtr0087315,FBtr0301314;parent_type=mRNA" - - - -	5813	11,652,838 – 11,652,917	+	6	82	83.00	-1.90	0.70	0.867143
				5814	11,652,838 – 11,652,917	-	6	82	83.00	-1.52	0.68	0.549782
				5815	11,652,917 – 11,653,011	+	4	100	91.24	-2.16	0.95	0.979599
4246	dm3.chr2R	11,672,225 – 11,672,333	- - - intron="intron;ID=intron_FBgn0083919:21_FBgn0083919:20;Name=Zasp52-in;Parent=FBtr0111048,FBtr0100387,FBtr0100388,FBtr0087315,FBtr0301313,FBtr0302163;parent_type=mRNA" - - - -	5816	11,672,225 – 11,672,319	-	11	107	74.27	-0.94	0.69	0.836157
				5817	11,672,232 – 11,672,333	+	11	106	79.20	-1.55	0.57	0.728660
				5818	11,672,232 – 11,672,333	-	11	106	79.20	-1.20	0.73	0.836776
4247	dm3.chr2R	11,675,803 – 11,675,911	- - - intron="intron;ID=intron_FBgn0083919:21_FBgn0083919:20;Name=Zasp52-in;Parent=FBtr0111048,FBtr0100387,FBtr0100388,FBtr0087315,FBtr0301313,FBtr0302163;parent_type=mRNA" - - - -	5819	11,675,803 – 11,675,911	+	7	116	71.73	-1.28	0.50	0.776849
4248	dm3.chr2R	11,679,283 – 11,679,333	- - - intron="intron;ID=intron_FBgn0083919:21_FBgn0083919:20;Name=Zasp52-in;Parent=FBtr0111048,FBtr0100387,FBtr0100388,FBtr0087315,FBtr0301313,FBtr0302163;parent_type=mRNA" - - - -	5820	11,679,283 – 11,679,333	+	4	52	87.58	-2.31	0.87	0.972570
4248	dm3.chr2R	11,679,283 – 11,679,333		5821	11,679,283 – 11,679,333	-	4	52	87.58	-1.36	0.90	0.760080
4249	dm3.chr2R	11,682,024 – 11,682,134	- - - intron="intron;ID=intron_FBgn0083919:21_FBgn0083919:20;Name=Zasp52-in;Parent=FBtr0111048,FBtr0100387,FBtr0100388,FBtr0087315,FBtr0301313,FBtr0302163;parent_type=mRNA" - - - -	5822	11,682,024 – 11,682,134	-	6	111	81.09	-2.11	0.46	0.500000
4250	dm3.chr2R	11,685,335 – 11,685,426	- - - intron="intron;ID=intron_FBgn0083919:21_FBgn0083919:20;Name=Zasp52-in;Parent=FBtr0111048,FBtr0100387,FBtr0100388,FBtr0087315,FBtr0301313,FBtr0302163;parent_type=mRNA" - - - -	5823	11,685,335 – 11,685,426	+	9	95	82.68	-2.03	0.74	0.954484
4250	dm3.chr2R	11,685,335 – 11,685,426		5824	11,685,335 – 11,685,426	-	9	95	82.68	-2.07	0.78	0.972016
4251	dm3.chr2R	11,691,815 – 11,691,925	- - - intron="intron;ID=intron_FBgn0083919:22_FBgn0083919:21;Name=Zasp52-in;Parent=FBtr0111048,FBtr0100387,FBtr0100388,FBtr0301313,FBtr0302163;parent_type=mRNA" - - - -	5825	11,691,815 – 11,691,925	+	5	115	84.43	-1.10	0.96	0.864107
4252	dm3.chr2R	11,715,335 – 11,715,386	- - CDS="CDS;ID=CDS_CG8246:5_498;Name=Poxn-cds;Parent=FBtr0087311;parent_type=mRNA" - - - - -	5826	11,715,335 – 11,715,386	-	3	51	96.08	-1.21	0.99	0.796073
4253	dm3.chr2R	11,715,426 – 11,715,546	- - CDS="CDS;ID=CDS_CG8246:5_498;Name=Poxn-cds;Parent=FBtr0087311;parent_type=mRNA" - - - - -	5827	11,715,426 – 11,715,546	+	14	120	82.31	-1.94	0.46	0.500000
4254	dm3.chr2R	11,721,661 – 11,721,768	- - - intron="intron;ID=intron_CG8246:1_CG8246:2;Name=Poxn-in;Parent=FBtr0087311;parent_type=mRNA" - - - -	5828	11,721,661 – 11,721,768	-	5	123	78.17	-1.38	0.70	0.670452
4255	dm3.chr2R	11,723,470 – 11,723,561	- - - - - - - -	5829	11,723,470 – 11,723,561	-	6	100	82.40	-2.48	0.63	0.938908
4256	dm3.chr2R	11,725,387 – 11,725,462	- - - - - - - -	5830	11,725,387 – 11,725,462	+	7	93	68.21	-1.83	0.60	0.984666
4256	dm3.chr2R	11,725,387 – 11,725,462	- - - - - - - -	5831	11,725,387 – 11,725,462	-	7	93	68.21	-1.20	0.70	0.949134
4257	dm3.chr2R	11,725,802 – 11,725,928	- - - - - - - -	5832	11,725,802 – 11,725,897	+	6	95	84.26	-2.02	0.72	0.886354
				5833	11,725,802 – 11,725,897	-	6	95	84.26	-2.28	0.76	0.965318
				5834	11,725,832 – 11,725,928	+	6	99	77.63	-2.01	0.50	0.711145
				5835	11,725,832 – 11,725,928	-	6	99	77.63	-1.87	0.54	0.729958
4258	dm3.chr2R	11,729,902 – 11,729,992	- - - - - - - -	5836	11,729,902 – 11,729,992	-	8	109	79.43	-2.65	0.52	0.956963
4259	dm3.chr2R	11,733,827 – 11,733,942	- - - intron="intron;ID=intron_CG8249:1_CG8249:2;Name=CG8249-in;Parent=FBtr0087310;parent_type=mRNA" - - - -	5837	11,733,827 – 11,733,942	-	6	115	77.16	-1.42	0.53	0.524227
4260	dm3.chr2R	11,736,402 – 11,736,495	- - - - - - - -	5838	11,736,402 – 11,736,495	+	8	110	57.39	-0.82	0.45	0.880699
4261	dm3.chr2R	11,738,178 – 11,738,255	- - - intron="intron;ID=intron_CG8253:1_CG8253:2;Name=tun-in;Parent=FBtr0087287;parent_type=mRNA" - - - -	5839	11,738,178 – 11,738,255	+	4	80	74.84	-1.76	0.51	0.587923
4261	dm3.chr2R	11,738,178 – 11,738,255		5840	11,738,178 – 11,738,255	-	4	80	74.84	-1.50	0.60	0.669576
4262	dm3.chr2R	11,738,815 – 11,738,904	- - - intron="intron;ID=intron_CG8253:1_CG8253:2;Name=tun-in;Parent=FBtr0087287;parent_type=mRNA" - - - -	5841	11,738,815 – 11,738,904	-	4	89	94.76	-1.88	0.92	0.895364
4263	dm3.chr2R	11,751,213 – 11,751,313	- - - - - - - -	5842	11,751,213 – 11,751,313	+	6	127	82.17	-2.10	0.77	0.947842
4263	dm3.chr2R	11,751,213 – 11,751,313	- - - - - - - -	5843	11,751,213 – 11,751,313	-	6	127	82.17	-1.60	0.84	0.893983
4264	dm3.chr2R	11,764,529 – 11,764,635	- - CDS="CDS;ID=CDS_FBgn0003425:7_554;Name=sli-cds;Parent=FBtr0087303;parent_type=mRNA" - - - - -	5844	11,764,529 – 11,764,635	+	11	115	70.20	-0.57	0.51	0.594139
4265	dm3.chr2R	11,765,844 – 11,765,941	- - - intron="intron;ID=intron_FBgn0003425:9_FBgn0003425:8;Name=sli-in;Parent=FBtr0087302,FBtr0087303,FBtr0087304,FBtr0112831,FBtr0112832;parent_type=mRNA" - - - -	5845	11,765,844 – 11,765,941	+	12	121	79.75	-1.11	0.74	0.643119
4266	dm3.chr2R	11,765,993 – 11,766,084	- - - intron="intron;ID=intron_FBgn0003425:9_FBgn0003425:8;Name=sli-in;Parent=FBtr0087302,FBtr0087303,FBtr0087304,FBtr0112831,FBtr0112832;parent_type=mRNA" - - - -	5846	11,765,993 – 11,766,084	-	8	108	67.13	-2.77	0.32	0.990247
4267	dm3.chr2R	11,777,258 – 11,777,355	- - - intron="intron;ID=intron_FBgn0003425:21_FBgn0003425:20;Name=sli-in;Parent=FBtr0087302,FBtr0087303,FBtr0087304,FBtr0112831,FBtr0112832;parent_type=mRNA" - - - -	5847	11,777,258 – 11,777,355	+	5	103	88.45	-1.75	0.84	0.802138
4268	dm3.chr2R	11,780,741 – 11,780,809	- - - intron="intron;ID=intron_FBgn0003425:22_FBgn0003425:21;Name=sli-in;Parent=FBtr0112831,FBtr0112832;parent_type=mRNA" - - - -	5848	11,780,741 – 11,780,809	-	5	68	97.06	-0.78	1.00	0.551483
4269	dm3.chr2R	11,787,658 – 11,787,775	- - - - - - - -	5849	11,787,658 – 11,787,759	+	7	115	67.90	-1.40	0.44	0.709994
				5850	11,787,658 – 11,787,759	-	7	115	67.90	-1.51	0.43	0.755715
				5851	11,787,670 – 11,787,775	+	7	115	72.48	-2.16	0.52	0.974265
4270	dm3.chr2R	11,791,795 – 11,791,846	- - - - - - - -	5852	11,791,795 – 11,791,846	+	5	52	95.74	-1.25	1.00	0.861156
4270	dm3.chr2R	11,791,795 – 11,791,846	- - - - - - - -	5853	11,791,795 – 11,791,846	-	5	52	95.74	-1.10	0.95	0.545514
4271	dm3.chr2R	11,799,733 – 11,799,825	- - - - - - - -	5854	11,799,733 – 11,799,825	+	7	94	81.40	-2.32	0.56	0.910519
4272	dm3.chr2R	11,800,571 – 11,800,621	- - - - - - - -	5855	11,800,571 – 11,800,621	+	5	50	99.20	-1.42	0.98	0.811202
4273	dm3.chr2R	11,816,382 – 11,816,449	- - - intron="intron;ID=intron_CG8291:10_CG8291:2;Name=bdg-in;Parent=FBtr0087300;parent_type=mRNA" - - - -	5856	11,816,382 – 11,816,449	-	11	80	76.08	-1.16	0.70	0.843618
4274	dm3.chr2R	11,816,790 – 11,816,898	- - - intron="intron;ID=intron_CG8291:10_CG8291:2;Name=bdg-in;Parent=FBtr0087300;parent_type=mRNA" - - - -	5857	11,816,790 – 11,816,898	+	5	117	70.26	-1.29	0.47	0.500000
4275	dm3.chr2R	11,818,038 – 11,818,137	- - - intron="intron;ID=intron_CG8291:10_CG8291:2;Name=bdg-in;Parent=FBtr0087300;parent_type=mRNA" - - - -	5858	11,818,038 – 11,818,137	+	5	116	73.78	-2.41	0.51	0.958855
4276	dm3.chr2R	11,818,973 – 11,819,024	- - - intron="intron;ID=intron_CG8291:10_CG8291:2;Name=bdg-in;Parent=FBtr0087300;parent_type=mRNA" - - - -	5859	11,818,973 – 11,819,024	+	5	53	75.29	-1.00	0.74	0.729582
4276	dm3.chr2R	11,818,973 – 11,819,024		5860	11,818,973 – 11,819,024	-	5	53	75.29	-3.10	0.85	0.998940
4277	dm3.chr2R	11,819,437 – 11,819,553	- - - - - - - -	5861	11,819,437 – 11,819,553	+	7	122	65.12	-1.87	0.26	0.577407
4278	dm3.chr2R	11,821,499 – 11,821,599	- - - intron="intron;ID=intron_FBgn0015247:4_FBgn0015247:2;Name=Iap2-in;Parent=FBtr0087296;parent_type=mRNA" - - - -	5862	11,821,499 – 11,821,599	-	6	120	65.11	-2.53	0.29	0.923361
4279	dm3.chr2R	11,895,572 – 11,895,662	- - - - - - - -	5863	11,895,572 – 11,895,662	+	4	102	59.50	-1.03	0.44	0.685566
4279	dm3.chr2R	11,895,572 – 11,895,662	- - - - - - - -	5864	11,895,572 – 11,895,662	-	4	102	59.50	-1.31	0.51	0.957771
4280	dm3.chr2R	11,925,394 – 11,925,444	- - - intron="intron;ID=intron_FBgn0034070:1_FBgn0034070:2;Name=SP2353-in;Parent=FBtr0087209;parent_type=mRNA" - - - -	5865	11,925,394 – 11,925,444	-	10	51	96.46	-2.12	0.79	0.592643
4281	dm3.chr2R	11,925,536 – 11,925,646	- - - - - - - -	5866	11,925,536 – 11,925,646	+	7	113	71.70	-0.86	0.54	0.532274
4282	dm3.chr2R	11,928,584 – 11,928,741	- - CDS="CDS;ID=CDS_FBgn0034070:4_678;Name=SP2353-cds;Parent=FBtr0087209;parent_type=mRNA" - - - - -	5867	11,928,584 – 11,928,685	+	5	101	82.92	-1.32	0.80	0.645332
4282	dm3.chr2R	11,928,584 – 11,928,741		5868	11,928,651 – 11,928,741	-	4	90	92.53	-2.21	0.89	0.944867
4283	dm3.chr2R	11,939,420 – 11,939,518	- - - intron="intron;ID=intron_CG8405:10_CG8405:11;Name=CG8405-in;Parent=FBtr0087210;parent_type=mRNA" - - - -	5869	11,939,420 – 11,939,518	+	7	105	72.77	-0.78	0.68	0.792908
4284	dm3.chr2R	11,943,674 – 11,943,781	- - - intron="intron;ID=intron_CG8405:10_CG8405:11;Name=CG8405-in;Parent=FBtr0087210;parent_type=mRNA" - - - -	5870	11,943,674 – 11,943,781	-	4	109	78.23	-1.56	0.66	0.619483
4285	dm3.chr2R	11,947,538 – 11,947,637	- - - - - - - -	5871	11,947,538 – 11,947,637	-	4	106	85.01	-2.99	0.77	0.991111
4286	dm3.chr2R	11,952,737 – 11,952,844	FBnoncoding="pre_miRNA;ID=FBtr0304456;Name=mir-137-RM;Parent=FBgn0262446;Alias=CR43012-RM;Dbxref=FlyBase_Annotation_IDs:CR43012-RM,miRBase:MI0005849" - - - "Rfam_10.0=RF00694;mir-137;AASR01013769.1/615-715\|8.9e-45" - - "mirBase_v16=dsi-mir-137\|2.8e-48"	5872	11,952,737 – 11,952,844	+	12	130	74.97	-2.89	0.66	0.999242
4286	dm3.chr2R	11,952,737 – 11,952,844		5873	11,952,737 – 11,952,844	-	12	130	74.97	-2.77	0.73	0.999148
4287	dm3.chr2R	11,955,998 – 11,956,092	- - - - - - - -	5874	11,955,998 – 11,956,092	+	10	110	70.38	-1.18	0.44	0.532179
4288	dm3.chr2R	11,962,572 – 11,962,666	- - - - - - - -	5875	11,962,572 – 11,962,666	+	6	109	68.74	-1.31	0.54	0.859792
4288	dm3.chr2R	11,962,572 – 11,962,666	- - - - - - - -	5876	11,962,572 – 11,962,666	-	6	109	68.74	-0.67	0.61	0.586105
4289	dm3.chr2R	11,970,562 – 11,970,661	- - - - - - - -	5877	11,970,562 – 11,970,661	-	9	112	75.55	-1.47	0.60	0.910370
4290	dm3.chr2R	11,978,305 – 11,978,356	- - - intron="intron;ID=intron_FBgn0034072:16_FBgn0034072:15;Name=Dg-in;Parent=FBtr0087257,FBtr0087258,FBtr0087256,FBtr0306238;parent_type=mRNA" - - - -	5878	11,978,305 – 11,978,356	+	5	66	76.12	-2.19	0.59	0.953278
4290	dm3.chr2R	11,978,305 – 11,978,356		5879	11,978,305 – 11,978,356	-	5	66	76.12	-1.78	0.54	0.695826
4291	dm3.chr2R	11,978,665 – 11,978,729	- - - intron="intron;ID=intron_FBgn0034072:16_FBgn0034072:15;Name=Dg-in;Parent=FBtr0087257,FBtr0087258,FBtr0087256,FBtr0306238;parent_type=mRNA" - - - -	5880	11,978,665 – 11,978,729	+	8	70	68.85	-1.57	0.51	0.949778
4291	dm3.chr2R	11,978,665 – 11,978,729		5881	11,978,665 – 11,978,729	-	8	70	68.85	-1.91	0.52	0.986967
4292	dm3.chr2R	11,982,482 – 11,982,579	- - - intron="intron;ID=intron_FBgn0034072:16_FBgn0034072:15;Name=Dg-in;Parent=FBtr0087257,FBtr0087258,FBtr0087256,FBtr0306238;parent_type=mRNA" - - - -	5882	11,982,482 – 11,982,575	-	3	93	92.83	-1.92	0.90	0.883418
4292	dm3.chr2R	11,982,482 – 11,982,579		5883	11,982,486 – 11,982,579	-	3	93	92.11	-2.44	0.89	0.967989
4293	dm3.chr2R	11,986,346 – 11,986,414	- - - - - - - -	5884	11,986,346 – 11,986,414	+	6	75	55.02	-2.02	0.36	0.995025
4293	dm3.chr2R	11,986,346 – 11,986,414	- - - - - - - -	5885	11,986,346 – 11,986,414	-	6	75	55.02	-2.14	0.17	0.752588
4294	dm3.chr2R	11,998,121 – 11,998,182	- - CDS="CDS;ID=CDS_FBgn0034075:1_664;Name=Asph-cds;Parent=FBtr0087219,FBtr0087220;parent_type=mRNA" - - - - -	5886	11,998,121 – 11,998,182	-	12	66	88.83	-1.56	0.77	0.530615
4295	dm3.chr2R	12,000,402 – 12,000,521	- - - - - - - -	5887	12,000,402 – 12,000,492	-	12	108	57.81	-1.04	0.36	0.854026
4295	dm3.chr2R	12,000,402 – 12,000,521	- - - - - - - -	5888	12,000,431 – 12,000,521	-	12	108	56.85	-0.94	0.38	0.884527
4296	dm3.chr2R	12,002,624 – 12,002,737	- - - - - - - -	5889	12,002,624 – 12,002,737	+	8	116	63.11	-3.24	0.31	0.999056
4296	dm3.chr2R	12,002,624 – 12,002,737	- - - - - - - -	5890	12,002,624 – 12,002,737	-	8	116	63.11	-4.07	0.17	0.998007
4297	dm3.chr2R	12,007,073 – 12,007,240	- - - - - - - -	5891	12,007,073 – 12,007,170	+	4	120	76.90	-2.59	0.74	0.994133
4297	dm3.chr2R	12,007,073 – 12,007,240	- - - - - - - -	5892	12,007,121 – 12,007,240	+	4	120	85.94	-1.11	0.98	0.867675
4298	dm3.chr2R	12,012,902 – 12,013,000	- - CDS="CDS;ID=CDS_CG8428:1_514;Name=spin-cds;Parent=FBtr0089589;parent_type=mRNA" - - - - -	5893	12,012,902 – 12,013,000	-	12	112	65.06	-1.53	0.30	0.581711
4299	dm3.chr2R	12,023,284 – 12,023,423	- - - intron="intron;ID=intron_CG8428:9_CG8428:4;Name=spin-in;Parent=FBtr0089590,FBtr0089593;parent_type=mRNA" - - - -	5894	12,023,284 – 12,023,423	-	5	149	89.29	-2.15	0.76	0.818064
4300	dm3.chr2R	12,024,898 – 12,024,950	- - - - - - - -	5895	12,024,898 – 12,024,950	+	3	52	93.59	-1.92	1.02	0.984145
4301	dm3.chr2R	12,025,660 – 12,025,792	- - - - - - - -	5896	12,025,660 – 12,025,792	-	6	148	67.67	-1.49	0.43	0.612577
4302	dm3.chr2R	12,052,293 – 12,052,394	- - CDS="CDS;ID=CDS_FBgn0034083:2_661;Name=lbk-cds;Parent=FBtr0302084;parent_type=mRNA" - - - - -	5897	12,052,293 – 12,052,394	-	6	113	74.21	-1.58	0.55	0.728324
4303	dm3.chr2R	12,071,075 – 12,071,186	- - CDS="CDS;ID=CDS_FBgn0015754:13_663;Name=Lis-1-cds;Parent=FBtr0304747;parent_type=mRNA" - - - - -	5898	12,071,075 – 12,071,186	+	15	132	67.44	-0.30	0.55	0.621315
4304	dm3.chr2R	12,074,738 – 12,074,862	- - - intron="intron;ID=intron_CG8443:1_CG8443:2;Name=clu-in;Parent=FBtr0087242;parent_type=mRNA" - - - -	5899	12,074,738 – 12,074,835	-	11	120	72.36	-2.31	0.30	0.573187
4304	dm3.chr2R	12,074,738 – 12,074,862		5900	12,074,764 – 12,074,862	-	12	115	72.44	-2.21	0.33	0.791683
4305	dm3.chr2R	12,095,138 – 12,095,232	FBnoncoding="tRNA;ID=FBtr0087198;Name=tRNA:CR30237-RA;Parent=FBgn0050237;Alias=CR30237-RA;Dbxref=FlyBase_Annotation_IDs:CR30237-RA;score_text=Weakly" tRNAscann="Gln_chr2R_trna73" - - "Rfam_10.0=RF00005;tRNA;AANI01016231.1/175977-176048\|2.5e-29" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|2.5e-29" "unique_Noncode_2.0=u183049_mRNAlike\|2.2e-29" -	5901	12,095,138 – 12,095,232	+	13	94	85.31	-2.16	0.89	0.989557
4305	dm3.chr2R	12,095,138 – 12,095,232		5902	12,095,138 – 12,095,232	-	13	94	85.31	-1.21	0.89	0.871710
4306	dm3.chr2R	12,107,138 – 12,107,235	FBnoncoding="tRNA;ID=FBtr0087128;Name=tRNA:CR30239-RA;Parent=FBgn0050239;Alias=CR30239-RA;Dbxref=FlyBase_Annotation_IDs:CR30239-RA;score_text=Weakly" tRNAscann="Glu_chr2R_trna25" - - "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|1.1e-31" - - -	5903	12,107,138 – 12,107,235	+	13	105	77.32	-0.52	0.81	0.728568
4306	dm3.chr2R	12,107,138 – 12,107,235		5904	12,107,138 – 12,107,235	-	13	105	77.32	-1.74	0.76	0.989896
4307	dm3.chr2R	12,107,555 – 12,107,649	FBnoncoding="tRNA;ID=FBtr0087129;Name=tRNA:CR30240-RA;Parent=FBgn0050240;Alias=CR30240-RA;Dbxref=FlyBase_Annotation_IDs:CR30240-RA;score_text=Weakly" tRNAscann="Glu_chr2R_trna26" - - "Rfam_10.0=RF00005;tRNA;AAGE02012517.1/230117-230179\|1.5e-27" - - -	5905	12,107,555 – 12,107,649	+	9	108	81.72	-0.85	0.95	0.847317
4307	dm3.chr2R	12,107,555 – 12,107,649		5906	12,107,555 – 12,107,649	-	9	108	81.72	-1.08	0.96	0.921796
4308	dm3.chr2R	12,117,570 – 12,117,636	- - - - - - - -	5907	12,117,570 – 12,117,636	-	6	66	77.63	-1.17	0.69	0.740936
4309	dm3.chr2R	12,118,756 – 12,118,876	- - CDS="CDS;ID=CDS_CG15701:2_519;Name=CG15701-cds;Parent=FBtr0087131;parent_type=mRNA" - - - - -	5908	12,118,756 – 12,118,876	+	5	120	89.83	-1.42	0.86	0.607776
4310	dm3.chr2R	12,127,586 – 12,127,681	- - CDS="CDS;ID=CDS_FBgn0034098:2_582;Name=krimp-cds;Parent=FBtr0087189;parent_type=mRNA" - - - - -	5909	12,127,586 – 12,127,676	-	3	96	77.78	-1.98	0.60	0.627160
				5910	12,127,591 – 12,127,681	+	3	105	79.03	-1.82	0.74	0.819967
				5911	12,127,591 – 12,127,681	-	3	105	79.03	-2.31	0.67	0.912803
4311	dm3.chr2R	12,129,719 – 12,129,826	- - - - - - - -	5912	12,129,719 – 12,129,826	-	8	120	80.41	-2.05	0.63	0.919163
4312	dm3.chr2R	12,172,174 – 12,172,285	- - - intron="intron;ID=intron_CG9068:3_CG9068:4;Name=CG9068-in;Parent=FBtr0087138;parent_type=mRNA" - - - -	5913	12,172,174 – 12,172,285	-	6	117	77.16	-1.65	0.55	0.670751
4313	dm3.chr2R	12,185,114 – 12,185,251	- - - - - - - -	5914	12,185,114 – 12,185,251	+	12	155	70.52	-0.94	0.48	0.630918
4313	dm3.chr2R	12,185,114 – 12,185,251	- - - - - - - -	5915	12,185,114 – 12,185,251	-	12	155	70.52	-0.85	0.53	0.744830
4314	dm3.chr2R	12,186,489 – 12,186,582	- - - - - - - -	5916	12,186,489 – 12,186,582	-	4	102	85.81	-1.01	0.92	0.638231
4315	dm3.chr2R	12,186,629 – 12,186,720	- - - - - - - -	5917	12,186,629 – 12,186,720	+	5	101	80.80	-1.72	0.78	0.903369
4316	dm3.chr2R	12,187,446 – 12,187,545	- - - - - - - -	5918	12,187,446 – 12,187,545	-	12	109	74.12	-2.54	0.37	0.949647
4317	dm3.chr2R	12,190,653 – 12,190,773	- - - - - - - -	5919	12,190,653 – 12,190,743	+	6	99	63.21	-0.92	0.45	0.605212
				5920	12,190,682 – 12,190,773	+	8	106	76.25	-1.45	0.60	0.768967
				5921	12,190,682 – 12,190,773	-	8	106	76.25	-1.43	0.57	0.664087
4318	dm3.chr2R	12,191,517 – 12,191,678	- - - - - - - -	5922	12,191,517 – 12,191,609	-	8	106	80.05	-2.58	0.53	0.952336
4318	dm3.chr2R	12,191,517 – 12,191,678	- - - - - - - -	5923	12,191,569 – 12,191,678	-	6	116	78.30	-1.67	0.57	0.654117
4319	dm3.chr2R	12,197,515 – 12,197,625	- - CDS="CDS;ID=CDS_FBgn0085428:1_577;Name=Nox-cds;Parent=FBtr0112650;parent_type=mRNA" - - - - -	5924	12,197,515 – 12,197,625	-	13	116	77.84	-1.22	0.56	0.689902
4320	dm3.chr2R	12,210,411 – 12,210,505	- - CDS="CDS;ID=CDS_FBgn0034114:2_555;Name=CG4282-cds;Parent=FBtr0087144;parent_type=mRNA" - - - - -	5925	12,210,411 – 12,210,505	-	9	96	61.43	-0.91	0.40	0.820989
4321	dm3.chr2R	12,215,079 – 12,215,129	- - - intron="intron;ID=intron_FBgn0020611:7_FBgn0020611:6;Name=Vha44-in;Parent=FBtr0290031,FBtr0290032;parent_type=mRNA" - - - -	5926	12,215,079 – 12,215,129	-	4	50	89.67	-2.03	0.74	0.606992
4322	dm3.chr2R	12,221,178 – 12,221,273	- - - intron="intron;ID=intron_FBgn0020611:12_FBgn0020611:11;Name=Vha44-in;Parent=FBtr0290031,FBtr0087176,FBtr0087175;parent_type=mRNA" - - - -	5927	12,221,178 – 12,221,273	+	6	111	78.50	-2.23	0.62	0.955636
4322	dm3.chr2R	12,221,178 – 12,221,273		5928	12,221,178 – 12,221,273	-	6	111	78.50	-3.50	0.73	0.999193
4323	dm3.chr2R	12,221,778 – 12,221,828	- - - - - - - -	5929	12,221,778 – 12,221,828	+	7	51	87.97	-2.31	0.66	0.805121
4323	dm3.chr2R	12,221,778 – 12,221,828	- - - - - - - -	5930	12,221,778 – 12,221,828	-	7	51	87.97	-2.08	0.75	0.862604
4324	dm3.chr2R	12,221,851 – 12,221,924	- - - - - - - -	5931	12,221,851 – 12,221,924	-	8	76	68.24	-2.50	0.22	0.651635
4325	dm3.chr2R	12,223,097 – 12,223,194	- - - - - - - -	5932	12,223,097 – 12,223,194	+	8	114	63.99	-1.77	0.29	0.568854
4326	dm3.chr2R	12,223,529 – 12,223,660	- - - - - - - -	5933	12,223,529 – 12,223,660	+	12	151	68.85	-1.29	0.38	0.554073
4327	dm3.chr2R	12,226,017 – 12,226,123	- - - intron="intron;ID=intron_CG4311:3_CG4311:2;Name=Hmgs-in;Parent=FBtr0087146;parent_type=mRNA" - - - -	5934	12,226,017 – 12,226,123	+	5	107	71.82	-1.47	0.48	0.547888
4328	dm3.chr2R	12,240,136 – 12,240,226	- - - - - - - -	5935	12,240,136 – 12,240,226	-	12	112	78.21	-1.74	0.56	0.770295
4329	dm3.chr2R	12,241,547 – 12,241,651	- - - - - - - -	5936	12,241,547 – 12,241,651	+	7	105	80.83	-1.89	0.49	0.548899
4330	dm3.chr2R	12,243,331 – 12,243,427	- - - - - - - -	5937	12,243,331 – 12,243,427	-	8	99	88.34	-1.20	0.85	0.505240
4331	dm3.chr2R	12,249,833 – 12,249,941	- - CDS="CDS;ID=CDS_CG6262:13_544;Name=CG6262-cds;Parent=FBtr0087153;parent_type=mRNA" - - - - -	5938	12,249,833 – 12,249,941	+	5	108	87.78	-1.86	0.73	0.602818
4332	dm3.chr2R	12,263,483 – 12,263,578	- - - - - - - -	5939	12,263,483 – 12,263,578	-	9	95	81.32	-1.66	0.75	0.933126
4332	dm3.chr2R	12,263,483 – 12,263,578	- - - - - - - -	5940	12,263,483 – 12,263,578	-	9	95	81.40	-1.65	0.75	0.930286
4333	dm3.chr2R	12,263,714 – 12,263,824	- - - - - - - -	5941	12,263,714 – 12,263,824	-	5	120	82.62	-2.05	0.63	0.779781
4334	dm3.chr2R	12,270,227 – 12,270,354	- - - - - - - -	5942	12,270,227 – 12,270,341	-	7	116	57.28	-1.21	0.30	0.537218
4334	dm3.chr2R	12,270,227 – 12,270,354	- - - - - - - -	5943	12,270,264 – 12,270,354	-	8	95	65.60	-1.43	0.35	0.661244
4335	dm3.chr2R	12,270,943 – 12,271,036	- - - - - - - -	5944	12,270,943 – 12,271,036	-	7	118	71.39	-2.03	0.57	0.983388
4336	dm3.chr2R	12,277,034 – 12,277,144	- - - intron="intron;ID=intron_FBgn0053960:1_FBgn0053960:2;Name=CG33960-in;Parent=FBtr0100001,FBtr0290009;parent_type=mRNA" - - - -	5945	12,277,034 – 12,277,144	-	6	110	83.62	-1.96	0.69	0.865544
4337	dm3.chr2R	12,288,140 – 12,288,242	- - - intron="intron;ID=intron_FBgn0053960:2_FBgn0053960:3;Name=CG33960-in;Parent=FBtr0100001,FBtr0290009;parent_type=mRNA" - - - -	5946	12,288,140 – 12,288,242	-	8	110	79.50	-1.73	0.66	0.869075
4338	dm3.chr2R	12,301,902 – 12,301,997	- - - intron="intron;ID=intron_FBgn0053960:2_FBgn0053960:3;Name=CG33960-in;Parent=FBtr0100001,FBtr0290009;parent_type=mRNA" - - - -	5947	12,301,902 – 12,301,997	+	11	111	74.35	-1.01	0.60	0.682694
4339	dm3.chr2R	12,308,357 – 12,308,430	- - - intron="intron;ID=intron_FBgn0053960:3_FBgn0053960:4;Name=CG33960-in;Parent=FBtr0100001,FBtr0290009;parent_type=mRNA" - - - -	5948	12,308,357 – 12,308,430	+	12	81	72.10	-0.88	0.51	0.530044
4340	dm3.chr2R	12,313,839 – 12,313,898	- - - intron="intron;ID=intron_FBgn0053960:11_FBgn0053960:12;Name=CG33960-in;Parent=FBtr0100001,FBtr0290009;parent_type=mRNA" - - - -	5949	12,313,839 – 12,313,898	+	8	69	71.43	-1.96	0.37	0.768116
4341	dm3.chr2R	12,334,892 – 12,335,044	- - - - - - - -	5950	12,334,892 – 12,335,044	+	6	184	79.41	-2.38	0.64	0.964678
4341	dm3.chr2R	12,334,892 – 12,335,044	- - - - - - - -	5951	12,334,892 – 12,335,044	-	6	184	79.41	-2.90	0.64	0.992845
4342	dm3.chr2R	12,340,322 – 12,340,424	- - - - - - - -	5952	12,340,322 – 12,340,424	+	8	103	87.90	-2.42	0.65	0.842649
4343	dm3.chr2R	12,351,858 – 12,351,941	- - - - - - - -	5953	12,351,858 – 12,351,941	+	12	84	94.85	-1.52	0.99	0.932657
4343	dm3.chr2R	12,351,858 – 12,351,941	- - - - - - - -	5954	12,351,858 – 12,351,941	-	12	84	94.85	-1.94	0.93	0.936518
4344	dm3.chr2R	12,362,389 – 12,362,482	- - - - - - - -	5955	12,362,389 – 12,362,482	+	6	99	77.41	-1.99	0.50	0.740751
4345	dm3.chr2R	12,373,459 – 12,373,517	- - - - - - - -	5956	12,373,459 – 12,373,517	+	7	58	79.89	-2.29	0.48	0.872391
4346	dm3.chr2R	12,375,327 – 12,375,424	- - - - - - - -	5957	12,375,327 – 12,375,424	+	5	111	61.58	-1.13	0.46	0.838169
4346	dm3.chr2R	12,375,327 – 12,375,424	- - - - - - - -	5958	12,375,327 – 12,375,424	-	5	111	61.58	-1.49	0.49	0.971548
4347	dm3.chr2R	12,382,010 – 12,382,163	- - - - - - - -	5959	12,382,010 – 12,382,163	+	7	180	59.75	-1.12	0.36	0.747903
4348	dm3.chr2R	12,391,064 – 12,391,174	- - CDS="CDS;ID=CDS_CG4700:2_548;Name=Sema-2a-cds;Parent=FBtr0087088;parent_type=mRNA" - - - - -	5960	12,391,064 – 12,391,174	-	6	120	81.18	-2.08	0.70	0.937988
4349	dm3.chr2R	12,393,335 – 12,393,398	- - - intron="intron;ID=intron_CG4700:2_CG4700:3;Name=Sema-2a-in;Parent=FBtr0087088;parent_type=mRNA" - - - -	5961	12,393,335 – 12,393,398	-	8	63	99.21	-1.04	1.01	0.743428
4350	dm3.chr2R	12,397,336 – 12,397,435	- - - intron="intron;ID=intron_CG4700:2_CG4700:3;Name=Sema-2a-in;Parent=FBtr0087088;parent_type=mRNA" - - - -	5962	12,397,336 – 12,397,435	+	7	116	69.75	-1.08	0.50	0.558596
4351	dm3.chr2R	12,399,265 – 12,399,430	- - - intron="intron;ID=intron_CG4700:2_CG4700:3;Name=Sema-2a-in;Parent=FBtr0087088;parent_type=mRNA" - - - -	5963	12,399,265 – 12,399,382	+	8	120	84.77	-2.78	0.67	0.981282
				5964	12,399,305 – 12,399,416	+	7	116	82.87	-2.57	0.75	0.986472
				5965	12,399,318 – 12,399,430	+	7	116	81.85	-2.00	0.81	0.967632
4352	dm3.chr2R	12,399,529 – 12,399,679	- - - intron="intron;ID=intron_CG4700:2_CG4700:3;Name=Sema-2a-in;Parent=FBtr0087088;parent_type=mRNA" - - - -	5966	12,399,529 – 12,399,679	-	5	173	61.04	-1.13	0.46	0.878375
4353	dm3.chr2R	12,402,222 – 12,402,347	- - - intron="intron;ID=intron_CG4700:2_CG4700:3;Name=Sema-2a-in;Parent=FBtr0087088;parent_type=mRNA" - - - -	5967	12,402,222 – 12,402,320	+	8	109	79.99	-2.32	0.59	0.967128
				5968	12,402,222 – 12,402,320	-	8	109	79.99	-2.51	0.67	0.991836
				5969	12,402,249 – 12,402,347	+	12	116	84.89	-1.45	0.72	0.526411
				5970	12,402,249 – 12,402,347	-	12	116	84.89	-1.93	0.73	0.879925
4354	dm3.chr2R	12,415,419 – 12,415,469	- - - intron="intron;ID=intron_CG4700:5_CG4700:6;Name=Sema-2a-in;Parent=FBtr0087088,FBtr0087089,FBtr0087090;parent_type=mRNA" - - - -	5971	12,415,419 – 12,415,469	+	3	50	100.00	-1.55	1.00	0.899900
4355	dm3.chr2R	12,432,789 – 12,432,885	- - - - - - - -	5972	12,432,789 – 12,432,885	-	12	118	93.47	-1.73	0.85	0.692148
4356	dm3.chr2R	12,435,916 – 12,435,981	- - - - - - - -	5973	12,435,916 – 12,435,981	+	6	65	100.00	-0.83	1.00	0.500000
4357	dm3.chr2R	12,441,272 – 12,441,367	- - - intron="intron;ID=intron_FBgn0034135:2_FBgn0034135:4;Name=Syn2-in;Parent=FBtr0087093,FBtr0087096,FBtr0306004;parent_type=mRNA" - - - -	5974	12,441,272 – 12,441,363	-	8	95	87.22	-2.17	0.78	0.932792
4357	dm3.chr2R	12,441,272 – 12,441,367		5975	12,441,276 – 12,441,367	-	8	97	88.53	-3.19	0.86	0.996694
4358	dm3.chr2R	12,446,191 – 12,446,283	- - - - - - - -	5976	12,446,191 – 12,446,283	+	8	92	75.15	-1.31	0.62	0.801812
4358	dm3.chr2R	12,446,191 – 12,446,283	- - - - - - - -	5977	12,446,191 – 12,446,283	-	8	92	75.15	-3.13	1.01	0.997617
4359	dm3.chr2R	12,450,676 – 12,450,769	- - - intron="intron;ID=intron_FBgn0034136:7_FBgn0034136:6;Name=DAT-in;Parent=FBtr0087125;parent_type=mRNA" - - - -	5978	12,450,676 – 12,450,769	-	12	109	84.74	-1.85	0.95	0.983458
4360	dm3.chr2R	12,458,395 – 12,458,510	- - CDS="CDS;ID=CDS_FBgn0034138:4_686;Name=RpS15-cds;Parent=FBtr0087124;parent_type=mRNA" - - - - -	5979	12,458,395 – 12,458,510	+	14	118	77.43	-0.88	0.59	0.637178
4361	dm3.chr2R	12,500,449 – 12,500,526	- - - intron="intron;ID=intron_FBgn0034145:5_FBgn0034145:7;Name=CG5065-in;Parent=FBtr0302206;parent_type=mRNA" - - - -	5980	12,500,449 – 12,500,526	-	6	77	59.36	-0.35	0.44	0.500000
4362	dm3.chr2R	12,503,621 – 12,503,694	- - - intron="intron;ID=intron_FBgn0034145:5_FBgn0034145:7;Name=CG5065-in;Parent=FBtr0302206;parent_type=mRNA" - - - -	5981	12,503,621 – 12,503,694	+	5	73	84.35	-1.46	0.84	0.814061
4362	dm3.chr2R	12,503,621 – 12,503,694		5982	12,503,621 – 12,503,694	-	5	73	84.35	-2.60	0.67	0.959546
4363	dm3.chr2R	12,505,330 – 12,505,432	- - - intron="intron;ID=intron_FBgn0034145:5_FBgn0034145:7;Name=CG5065-in;Parent=FBtr0302206;parent_type=mRNA" - - - -	5983	12,505,330 – 12,505,432	-	6	115	76.29	-1.77	0.51	0.583766
4364	dm3.chr2R	12,540,961 – 12,541,017	- - - - - - - -	5984	12,540,961 – 12,541,017	-	11	57	68.46	-0.35	0.60	0.805425
4365	dm3.chr2R	12,547,193 – 12,547,290	- - - - - - - -	5985	12,547,193 – 12,547,290	+	6	105	65.49	-2.26	0.34	0.956140
4365	dm3.chr2R	12,547,193 – 12,547,290	- - - - - - - -	5986	12,547,193 – 12,547,290	-	6	105	65.49	-2.12	0.35	0.941678
4366	dm3.chr2R	12,548,278 – 12,548,387	- - - - - - - -	5987	12,548,278 – 12,548,387	+	6	110	69.84	-2.55	0.25	0.704311
4367	dm3.chr2R	12,555,466 – 12,555,606	- - - - - - - -	5988	12,555,466 – 12,555,570	+	4	115	67.35	-2.34	0.58	0.993283
				5989	12,555,466 – 12,555,570	-	4	115	67.35	-1.42	0.49	0.598482
				5990	12,555,503 – 12,555,606	-	7	116	65.98	-1.58	0.39	0.611178
4368	dm3.chr2R	12,573,086 – 12,573,155	- - - - - - - -	5991	12,573,086 – 12,573,155	-	5	71	76.28	-2.01	0.74	0.985642
4369	dm3.chr2R	12,590,720 – 12,590,830	- - - intron="intron;ID=intron_FBgn0050463:13_FBgn0050463:12;Name=CG30463-in;Parent=FBtr0087112,FBtr0087113,FBtr0113379,FBtr0113380;parent_type=mRNA" - - - -	5992	12,590,720 – 12,590,830	-	6	122	79.47	-1.83	0.57	0.679671
4370	dm3.chr2R	12,594,154 – 12,594,249	- - - intron="intron;ID=intron_FBgn0050463:14_FBgn0050463:13;Name=CG30463-in;Parent=FBtr0087112,FBtr0113379;parent_type=mRNA" - - - -	5993	12,594,154 – 12,594,249	-	6	107	79.83	-1.58	0.81	0.928988
4371	dm3.chr2R	12,601,157 – 12,601,219	- - - intron="intron;ID=intron_FBgn0050463:14_FBgn0050463:13;Name=CG30463-in;Parent=FBtr0087112,FBtr0113379;parent_type=mRNA" - - - -	5994	12,601,157 – 12,601,219	+	10	66	72.78	-1.74	0.37	0.669925
4372	dm3.chr2R	12,602,864 – 12,602,941	- - - intron="intron;ID=intron_FBgn0050463:14_FBgn0050463:13;Name=CG30463-in;Parent=FBtr0087112,FBtr0113379;parent_type=mRNA" - - - -	5995	12,602,864 – 12,602,941	-	7	81	85.21	-1.74	0.66	0.565735
4373	dm3.chr2R	12,610,745 – 12,610,817	- - - intron="intron;ID=intron_FBgn0050463:15_FBgn0050463:14;Name=CG30463-in;Parent=FBtr0087112,FBtr0113379;parent_type=mRNA" - - - -	5996	12,610,745 – 12,610,817	+	7	75	83.75	-2.66	0.44	0.614815
4374	dm3.chr2R	12,612,687 – 12,612,855	- - - intron="intron;ID=intron_FBgn0050463:15_FBgn0050463:14;Name=CG30463-in;Parent=FBtr0087112,FBtr0113379;parent_type=mRNA" - - - -	5997	12,612,687 – 12,612,855	+	4	168	91.32	-1.68	0.86	0.724947
4375	dm3.chr2R	12,619,645 – 12,619,746	- - - - - - - -	5998	12,619,645 – 12,619,745	+	7	101	72.59	-0.89	0.60	0.520600
4375	dm3.chr2R	12,619,645 – 12,619,746	- - - - - - - -	5999	12,619,646 – 12,619,746	+	7	101	72.89	-1.22	0.58	0.732864
4376	dm3.chr2R	12,621,193 – 12,621,288	- - - - - - - -	6000	12,621,193 – 12,621,288	+	12	116	78.08	-1.79	0.48	0.578198
4377	dm3.chr2R	12,622,056 – 12,622,159	- - - - - - - -	6001	12,622,056 – 12,622,159	+	5	105	91.04	-2.01	0.78	0.722023
4378	dm3.chr2R	12,628,462 – 12,628,554	- - - - - - - -	6002	12,628,462 – 12,628,554	-	5	111	68.68	-0.75	0.79	0.830270
4379	dm3.chr2R	12,630,563 – 12,630,665	- - - - - - - -	6003	12,630,563 – 12,630,665	-	8	117	69.65	-1.92	0.36	0.676586
4380	dm3.chr2R	12,648,064 – 12,648,156	- - - - - - - -	6004	12,648,064 – 12,648,156	-	13	111	63.28	-0.57	0.46	0.727992
4381	dm3.chr2R	12,649,257 – 12,649,354	- - - - - - - -	6005	12,649,257 – 12,649,354	+	13	105	66.82	-0.72	0.43	0.637619
4382	dm3.chr2R	12,652,958 – 12,653,050	- - CDS="CDS;ID=CDS_FBgn0259738:1_555;Name=CG42392-cds;Parent=FBtr0300043;parent_type=mRNA" intron="intron;ID=intron_FBgn0034155:29_FBgn0034155:28;Name=unc-104-in;Parent=FBtr0087079,FBtr0113088,FBtr0113089,FBtr0304679,FBtr0304680;parent_type=mRNA" - - - -	6006	12,652,958 – 12,653,050	+	6	105	88.84	-2.15	0.84	0.938535
4383	dm3.chr2R	12,662,635 – 12,662,750	- - CDS="CDS;ID=CDS_FBgn0011743:2_649;Name=Arp53D-cds;Parent=FBtr0087023;parent_type=mRNA" - - - - -	6007	12,662,635 – 12,662,750	+	15	120	70.74	-1.83	0.33	0.800794
4384	dm3.chr2R	12,681,405 – 12,681,547	- - CDS="CDS;ID=CDS_FBgn0034159:3_567;Name=CG15615-cds;Parent=FBtr0300552;parent_type=mRNA" intron="intron;ID=intron_FBgn0034159:3_FBgn0034159:2;Name=CG15615-in;Parent=FBtr0300552;parent_type=mRNA" - - - -	6008	12,681,405 – 12,681,516	-	6	112	74.31	-1.36	0.60	0.854964
4384	dm3.chr2R	12,681,405 – 12,681,547		6009	12,681,439 – 12,681,547	-	14	120	71.51	-0.84	0.66	0.904405
4385	dm3.chr2R	12,701,536 – 12,701,636	- - - - - - - -	6010	12,701,536 – 12,701,636	+	3	100	80.07	-1.68	0.78	0.755865
4386	dm3.chr2R	12,707,732 – 12,707,785	- - - - - - - -	6011	12,707,732 – 12,707,785	-	5	53	87.17	-1.08	0.88	0.561554
4387	dm3.chr2R	12,718,930 – 12,719,031	FBnoncoding="pre_miRNA;ID=FBtr0304404;Name=mir-8-RM;Parent=FBgn0262432;Alias=CR42988-RM;Dbxref=FlyBase_Annotation_IDs:CR42988-RM,miRBase:MI0000128" - - - "Rfam_10.0=RF00241;mir-8;AAPU01010182.1/5430-5508\|1.0e-22" "Noncode_2.0=n178708_u177806_NW_045840_miRNA_Anopheles\|8.9e-14" "unique_Noncode_2.0=u177806_miRNA_Anopheles\|7.7e-14" "mirBase_v16=dya-mir-8\|9.8e-45"	6012	12,718,930 – 12,719,031	+	15	115	82.85	-4.80	0.93	0.998944
4387	dm3.chr2R	12,718,930 – 12,719,031		6013	12,718,930 – 12,719,031	-	15	115	82.85	-4.20	0.85	0.999476
4388	dm3.chr2R	12,719,524 – 12,719,619	- - - - - - - -	6014	12,719,524 – 12,719,619	-	3	98	69.37	-2.35	0.59	0.979046
4389	dm3.chr2R	12,722,913 – 12,723,025	- - - - - - - -	6015	12,722,913 – 12,723,025	-	11	118	91.38	-1.19	0.94	0.762747
4390	dm3.chr2R	12,728,021 – 12,728,182	- - - - - - - -	6016	12,728,021 – 12,728,182	-	5	171	78.19	-1.88	0.61	0.822283
4391	dm3.chr2R	12,729,134 – 12,729,245	- - - - - - - -	6017	12,729,134 – 12,729,239	+	3	105	86.71	-1.28	0.95	0.834122
				6018	12,729,134 – 12,729,239	-	3	105	86.71	-1.25	0.91	0.685411
				6019	12,729,140 – 12,729,245	+	3	105	82.37	-1.27	0.94	0.858456
4392	dm3.chr2R	12,733,347 – 12,733,457	- - - - - - - -	6020	12,733,347 – 12,733,457	+	5	110	90.36	-1.76	0.78	0.564299
4392	dm3.chr2R	12,733,347 – 12,733,457	- - - - - - - -	6021	12,733,347 – 12,733,457	-	5	110	90.36	-2.16	0.80	0.877870
4393	dm3.chr2R	12,743,760 – 12,743,817	- - CDS="CDS;ID=CDS_CG5935:22_491;Name=Dek-cds;Parent=FBtr0100438;parent_type=mRNA" - - - - -	6022	12,743,760 – 12,743,817	-	12	58	85.15	-1.10	0.83	0.623065
4394	dm3.chr2R	12,744,912 – 12,745,008	- - - intron="intron;ID=intron_CG5935:1_CG5935:2;Name=Dek-in;Parent=FBtr0100437;parent_type=mRNA" - - - -	6023	12,744,912 – 12,745,008	+	11	112	70.31	-2.02	0.34	0.779774
4395	dm3.chr2R	12,757,484 – 12,757,577	- - - intron="intron;ID=intron_CG6426:1_CG6426:2;Name=CG6426-in;Parent=FBtr0087042;parent_type=mRNA" - - - -	6024	12,757,484 – 12,757,577	-	10	111	65.35	-1.07	0.40	0.630272
4396	dm3.chr2R	12,761,487 – 12,761,576	- - - intron="intron;ID=intron_CG6435:1_CG6435:2;Name=CG6435-in;Parent=FBtr0087045;parent_type=mRNA" - - - -	6025	12,761,487 – 12,761,576	+	6	90	72.82	-1.09	0.53	0.570113
4397	dm3.chr2R	12,777,244 – 12,777,340	- - - - - - - -	6026	12,777,244 – 12,777,340	+	9	103	64.90	-0.90	0.40	0.500000
4398	dm3.chr2R	12,778,766 – 12,778,908	- - - - - - - -	6027	12,778,766 – 12,778,908	-	6	149	80.92	-2.63	0.67	0.989405
4399	dm3.chr2R	12,793,617 – 12,793,788	- - - - - - - -	6028	12,793,617 – 12,793,788	+	4	172	95.14	-2.29	0.94	0.972425
4400	dm3.chr2R	12,802,096 – 12,802,216	- - - - - - - -	6029	12,802,096 – 12,802,216	+	5	120	95.64	-1.37	0.98	0.858086
4400	dm3.chr2R	12,802,096 – 12,802,216	- - - - - - - -	6030	12,802,096 – 12,802,216	-	5	120	95.64	-2.06	0.93	0.940320
4401	dm3.chr2R	12,804,766 – 12,804,824	- - - - - - - -	6031	12,804,766 – 12,804,824	+	4	58	80.17	-1.64	0.78	0.882473
4402	dm3.chr2R	12,805,024 – 12,805,116	- - - - - - - -	6032	12,805,024 – 12,805,116	-	6	93	79.64	-1.98	0.47	0.533207
4403	dm3.chr2R	12,806,035 – 12,806,146	- - - - - - - -	6033	12,806,035 – 12,806,146	+	8	119	70.23	-1.86	0.56	0.989619
4404	dm3.chr2R	12,811,078 – 12,811,154	- - - - - - - -	6034	12,811,078 – 12,811,154	+	6	77	76.69	-1.36	0.59	0.691304
4405	dm3.chr2R	12,814,459 – 12,814,578	- - - intron="intron;ID=intron_FBgn0003091:4_FBgn0003091:5;Name=Pkc53E-in;Parent=FBtr0087048,FBtr0112819,FBtr0305070;parent_type=mRNA" - - - -	6035	12,814,459 – 12,814,578	+	5	120	64.63	-2.12	0.47	0.989756
4405	dm3.chr2R	12,814,459 – 12,814,578		6036	12,814,459 – 12,814,578	-	5	120	64.63	-2.25	0.45	0.990810
4406	dm3.chr2R	12,819,979 – 12,820,034	- - CDS="CDS;ID=CDS_FBgn0003091:8_673;Name=Pkc53E-cds;Parent=FBtr0087048;parent_type=mRNA" - - - - -	6037	12,819,979 – 12,820,034	+	13	69	77.84	-2.11	0.75	0.989932
4407	dm3.chr2R	12,844,973 – 12,845,032	- - - - - - - -	6038	12,844,973 – 12,845,032	-	5	59	90.00	-2.06	0.94	0.976231
4408	dm3.chr2R	12,848,354 – 12,848,459	- - - - - - - -	6039	12,848,354 – 12,848,459	-	5	105	87.92	-1.24	0.86	0.500000
4409	dm3.chr2R	12,850,525 – 12,850,644	- - - - - - - -	6040	12,850,525 – 12,850,617	+	8	111	71.78	-1.37	0.48	0.531885
4409	dm3.chr2R	12,850,525 – 12,850,644	- - - - - - - -	6041	12,850,537 – 12,850,644	-	8	114	72.59	-2.08	0.40	0.845465
4410	dm3.chr2R	12,855,511 – 12,855,599	FBnoncoding="tRNA;ID=FBtr0087055;Name=tRNA:G3:53E-RA;Parent=FBgn0011867;Dbxref=FlyBase_Annotation_IDs:CR30236-RA;score_text=Weakly" tRNAscann="Gly_chr2R_trna27" - - "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|9.4e-32" - "unique_Noncode_2.0=u121243_piRNA_human\|9.5e-07" -	6042	12,855,511 – 12,855,599	+	13	93	82.72	-1.93	0.86	0.986397
4410	dm3.chr2R	12,855,511 – 12,855,599		6043	12,855,511 – 12,855,599	-	13	93	82.72	-1.84	0.74	0.961902
4411	dm3.chr2R	12,856,557 – 12,856,666	- - - - - - - -	6044	12,856,557 – 12,856,666	+	6	116	82.94	-1.68	0.68	0.662177
4412	dm3.chr2R	12,857,768 – 12,857,884	- - - - - - - -	6045	12,857,768 – 12,857,884	+	5	120	72.23	-1.66	0.46	0.669902
4413	dm3.chr2R	12,875,981 – 12,876,077	- - - intron="intron;ID=intron_CG6702:8_CG6702:9;Name=Cbp53E-in;Parent=FBtr0087056;parent_type=mRNA" - - - -	6046	12,875,981 – 12,876,077	+	6	113	61.91	-1.05	0.38	0.505171
4414	dm3.chr2R	12,882,773 – 12,882,871	- - - - - - - -	6047	12,882,773 – 12,882,871	-	6	110	75.92	-2.27	0.44	0.805197
4415	dm3.chr2R	12,908,240 – 12,908,291	- - - intron="intron;ID=intron_FBgn0024252:1_FBgn0024252:2;Name=Ark-in;Parent=FBtr0086967,FBtr0086968;parent_type=mRNA" - - - -	6048	12,908,240 – 12,908,291	+	5	59	72.15	-0.71	0.77	0.746741
4416	dm3.chr2R	12,913,905 – 12,914,055	- - - - - - - -	6049	12,913,905 – 12,914,055	+	10	168	65.39	-1.94	0.31	0.897023
4417	dm3.chr2R	12,914,647 – 12,914,755	- - - - - - - -	6050	12,914,647 – 12,914,755	-	5	119	84.01	-1.33	0.79	0.531165
4418	dm3.chr2R	12,915,135 – 12,915,228	- - - intron="intron;ID=intron_FBgn0023172:2_FBgn0023172:3;Name=RhoGEF2-in;Parent=FBtr0086969,FBtr0086970,FBtr0305083;parent_type=mRNA" - - - -	6051	12,915,135 – 12,915,228	+	6	100	75.59	-1.52	0.58	0.799976
4419	dm3.chr2R	12,915,928 – 12,915,995	- - - intron="intron;ID=intron_FBgn0023172:2_FBgn0023172:3;Name=RhoGEF2-in;Parent=FBtr0086969,FBtr0086970,FBtr0305083;parent_type=mRNA" - - - -	6052	12,915,928 – 12,915,995	+	4	67	97.76	-1.42	0.96	0.762749
4420	dm3.chr2R	12,917,164 – 12,917,262	- - - intron="intron;ID=intron_FBgn0023172:3_FBgn0023172:4;Name=RhoGEF2-in;Parent=FBtr0086969,FBtr0086970,FBtr0086971,FBtr0305083;parent_type=mRNA" - - - -	6053	12,917,164 – 12,917,262	-	5	98	98.98	-1.20	0.98	0.690505
4421	dm3.chr2R	12,918,079 – 12,918,181	- - - intron="intron;ID=intron_FBgn0023172:3_FBgn0023172:4;Name=RhoGEF2-in;Parent=FBtr0086969,FBtr0086970,FBtr0086971,FBtr0305083;parent_type=mRNA" - - - -	6054	12,918,079 – 12,918,181	-	6	105	88.54	-2.36	0.60	0.561004
4422	dm3.chr2R	12,918,261 – 12,918,381	- - - intron="intron;ID=intron_FBgn0023172:3_FBgn0023172:4;Name=RhoGEF2-in;Parent=FBtr0086969,FBtr0086970,FBtr0086971,FBtr0305083;parent_type=mRNA" - - - -	6055	12,918,261 – 12,918,381	+	5	120	88.74	-1.95	0.76	0.719484
4423	dm3.chr2R	12,939,304 – 12,939,414	- - CDS="CDS;ID=CDS_CG9646:5_535;Name=CG9646-cds;Parent=FBtr0086974;parent_type=mRNA" - - - - -	6056	12,939,304 – 12,939,414	+	12	120	83.03	-2.07	0.50	0.585022
4424	dm3.chr2R	12,951,543 – 12,951,700	- - - intron="intron;ID=intron_FBgn0034187:4_FBgn0034187:5;Name=CG6967-in;Parent=FBtr0300276;parent_type=mRNA" - - - -	6057	12,951,543 – 12,951,700	+	3	158	90.91	-2.57	0.90	0.982305
4425	dm3.chr2R	12,955,862 – 12,955,973	- - - intron="intron;ID=intron_FBgn0050460:5_FBgn0050460:3;Name=CG30460-in;Parent=FBtr0302611,FBtr0300958;parent_type=mRNA" - - - -	6058	12,955,862 – 12,955,973	-	12	120	81.10	-1.60	0.57	0.519541
4426	dm3.chr2R	12,971,340 – 12,971,486	- - - - - - - -	6059	12,971,340 – 12,971,486	-	5	147	86.54	-1.75	0.74	0.615082
4427	dm3.chr2R	12,971,515 – 12,971,652	- - - - - - - -	6060	12,971,515 – 12,971,620	+	5	107	94.58	-2.14	0.98	0.982667
				6061	12,971,551 – 12,971,652	+	4	111	86.52	-2.58	0.73	0.952115
				6062	12,971,551 – 12,971,652	-	4	111	86.52	-1.98	0.70	0.629764
4428	dm3.chr2R	12,983,611 – 12,983,706	- - - intron="intron;ID=intron_CG8938:1_CG8938:2;Name=GstS1-in;Parent=FBtr0087006;parent_type=mRNA" - - - -	6063	12,983,611 – 12,983,706	-	12	119	70.91	-1.13	0.49	0.620512
4429	dm3.chr2R	12,992,083 – 12,992,193	- - CDS="CDS;ID=CDS_FBgn0050456:2_575;Name=CG30456-cds;Parent=FBtr0273337;parent_type=mRNA" intron="intron;ID=intron_FBgn0050456:1_FBgn0050456:3;Name=CG30456-in;Parent=FBtr0273336;parent_type=mRNA" - - - -	6064	12,992,083 – 12,992,193	-	6	120	72.29	-1.40	0.52	0.706165
4430	dm3.chr2R	13,001,004 – 13,001,105	- - CDS="CDS;ID=CDS_CG15611:5_517;Name=CG15611-cds;Parent=FBtr0086981,FBtr0086982;parent_type=mRNA" - - - - -	6065	13,001,004 – 13,001,105	+	12	118	74.04	-0.69	0.61	0.579576
4430	dm3.chr2R	13,001,004 – 13,001,105		6066	13,001,004 – 13,001,105	-	12	118	74.04	-1.17	0.59	0.869106
4431	dm3.chr2R	13,021,455 – 13,021,589	- - - - - - - -	6067	13,021,455 – 13,021,561	-	6	106	80.75	-1.31	0.71	0.688990
4431	dm3.chr2R	13,021,455 – 13,021,589	- - - - - - - -	6068	13,021,493 – 13,021,589	-	6	108	77.89	-1.26	0.67	0.656327
4432	dm3.chr2R	13,022,715 – 13,022,806	- - - - - - - -	6069	13,022,715 – 13,022,806	+	3	93	62.27	-1.44	0.56	0.900444
4433	dm3.chr2R	13,024,512 – 13,024,625	- - - - - - - -	6070	13,024,512 – 13,024,625	-	6	113	72.41	-1.78	0.53	0.943173
4434	dm3.chr2R	13,025,044 – 13,025,183	- - CDS="CDS;ID=CDS_CG11395:2_502;Name=CG11395-cds;Parent=FBtr0086987;parent_type=mRNA" - - - - -	6071	13,025,044 – 13,025,143	-	5	105	69.92	-0.98	0.55	0.538014
4434	dm3.chr2R	13,025,044 – 13,025,183		6072	13,025,075 – 13,025,183	-	6	108	73.89	-1.02	0.60	0.672171
4435	dm3.chr2R	13,029,601 – 13,029,699	- - - - - - - -	6073	13,029,601 – 13,029,699	+	11	104	79.28	-1.40	0.65	0.774916
4436	dm3.chr2R	13,031,119 – 13,031,240	- - - - "Rfam_10.0=RF00012;U3;AB315892.1/34-170\|3.1e-60" "Noncode_2.0=n3496_u3125_AJ543994_snoRNA_Drosophila\|3.8e-38" "unique_Noncode_2.0=u3125_snoRNA_Drosophila\|3.3e-38" -	6074	13,031,119 – 13,031,240	-	14	140	81.15	-1.57	0.65	0.821776
4437	dm3.chr2R	13,031,468 – 13,031,588	FBnoncoding="tRNA;ID=FBtr0087001;Name=tRNA:CR30234-RA;Parent=FBgn0050234;Alias=CR30234-RA;Dbxref=FlyBase_Annotation_IDs:CR30234-RA;score_text=Weakly" tRNAscann="Leu_chr2R_trna71" - - "Rfam_10.0=RF00005;tRNA;ABJB011050621.1/467-540\|1.4e-34" - - -	6075	13,031,468 – 13,031,588	+	13	140	76.64	-1.00	0.78	0.918517
4437	dm3.chr2R	13,031,468 – 13,031,588		6076	13,031,468 – 13,031,588	-	13	140	76.64	-0.91	0.86	0.925398
4438	dm3.chr2R	13,042,729 – 13,042,792	- - - - - - - -	6077	13,042,729 – 13,042,792	+	11	66	67.07	-1.26	0.55	0.986562
4438	dm3.chr2R	13,042,729 – 13,042,792	- - - - - - - -	6078	13,042,729 – 13,042,792	-	11	66	67.07	-0.72	0.44	0.579285
4439	dm3.chr2R	13,048,143 – 13,048,248	- - CDS="CDS;ID=CDS_CG30457:2_509;Name=CG30457-cds;Parent=FBtr0086998;parent_type=mRNA" - - - - -	6079	13,048,143 – 13,048,248	+	12	116	73.66	-0.64	0.65	0.678959
4440	dm3.chr2R	13,069,772 – 13,069,907	- - - - - - - -	6080	13,069,772 – 13,069,907	+	4	161	53.72	-1.63	0.32	0.837765
4441	dm3.chr2R	13,070,268 – 13,070,364	- - - - - - - -	6081	13,070,268 – 13,070,364	-	10	99	64.38	-0.84	0.42	0.665934
4442	dm3.chr2R	13,073,086 – 13,073,150	- - - - - - - -	6082	13,073,086 – 13,073,150	+	7	71	77.78	-0.89	0.78	0.692995
4443	dm3.chr2R	13,083,656 – 13,083,763	- - CDS="CDS;ID=CDS_FBgn0034205:2_678;Name=CG10950-cds;Parent=FBtr0086990;parent_type=mRNA" - - - - -	6083	13,083,656 – 13,083,763	-	6	113	72.72	-2.35	0.36	0.843263
4444	dm3.chr2R	13,086,462 – 13,086,641	- - - - - - - -	6084	13,086,462 – 13,086,572	-	12	119	65.78	-1.48	0.34	0.624524
4444	dm3.chr2R	13,086,462 – 13,086,641	- - - - - - - -	6085	13,086,539 – 13,086,641	-	6	117	80.20	-1.46	0.68	0.613365
4445	dm3.chr2R	13,095,061 – 13,095,129	- - - - - - - -	6086	13,095,061 – 13,095,129	-	5	68	90.59	-0.53	1.03	0.672445
4446	dm3.chr2R	13,095,500 – 13,095,604	- - - - - - - -	6087	13,095,500 – 13,095,604	+	6	106	86.05	-2.00	0.82	0.939536
4446	dm3.chr2R	13,095,500 – 13,095,604	- - - - - - - -	6088	13,095,500 – 13,095,604	-	6	106	86.05	-1.72	0.76	0.745925
4447	dm3.chr2R	13,096,410 – 13,096,610	- - - - - - - -	6089	13,096,410 – 13,096,510	+	6	107	88.68	-2.74	0.51	0.619442
4447	dm3.chr2R	13,096,410 – 13,096,610	- - - - - - - -	6090	13,096,510 – 13,096,610	-	6	108	78.88	-2.58	0.69	0.992886
4448	dm3.chr2R	13,106,302 – 13,106,412	- - - - - - - -	6091	13,106,302 – 13,106,412	-	6	112	86.93	-2.33	0.55	0.530687
4449	dm3.chr2R	13,111,735 – 13,111,873	- - - - - - - -	6092	13,111,735 – 13,111,835	+	11	115	71.43	-1.26	0.45	0.697203
				6093	13,111,759 – 13,111,856	+	7	109	82.08	-2.21	0.84	0.987552
				6094	13,111,783 – 13,111,873	+	6	100	78.79	-2.03	0.88	0.989473
				6095	13,111,783 – 13,111,873	-	6	100	78.79	-1.85	0.71	0.944282
4450	dm3.chr2R	13,112,110 – 13,112,160	- - - - - - - -	6096	13,112,110 – 13,112,160	+	7	53	81.74	-1.39	0.73	0.741893
4451	dm3.chr2R	13,118,216 – 13,118,339	- - - - - - - -	6097	13,118,216 – 13,118,339	-	6	123	76.73	-1.41	0.54	0.562428
4452	dm3.chr2R	13,130,987 – 13,131,112	- - - - - - - -	6098	13,130,987 – 13,131,112	+	5	128	65.61	-1.75	0.55	0.990352
4453	dm3.chr2R	13,135,336 – 13,135,391	- - - - - - - -	6099	13,135,336 – 13,135,391	-	9	56	96.38	-1.41	0.99	0.896056
4454	dm3.chr2R	13,139,320 – 13,139,411	- - - - - - - -	6100	13,139,320 – 13,139,411	+	6	106	86.72	-2.01	0.77	0.848990
4454	dm3.chr2R	13,139,320 – 13,139,411	- - - - - - - -	6101	13,139,320 – 13,139,411	-	6	106	86.72	-2.00	0.78	0.862000
4455	dm3.chr2R	13,142,645 – 13,142,736	- - - - - - - -	6102	13,142,645 – 13,142,736	+	5	107	66.01	-1.17	0.50	0.779221
4456	dm3.chr2R	13,150,715 – 13,150,788	- - - - - - - -	6103	13,150,715 – 13,150,788	+	6	83	80.73	-2.47	0.51	0.867640
4457	dm3.chr2R	13,155,700 – 13,155,780	- - - intron="intron;ID=intron_FBgn0053197:1_FBgn0053197:2;Name=mbl-in;Parent=FBtr0086992,FBtr0086991,FBtr0086993,FBtr0301482,FBtr0290299,FBtr0290298,FBtr0086994;parent_type=mRNA" - - - -	6104	13,155,700 – 13,155,780	+	7	83	77.86	-2.51	0.56	0.970286
4457	dm3.chr2R	13,155,700 – 13,155,780		6105	13,155,700 – 13,155,780	-	7	83	77.86	-1.94	0.61	0.895062
4458	dm3.chr2R	13,164,076 – 13,164,180	- - - intron="intron;ID=intron_FBgn0053197:2_FBgn0053197:3;Name=mbl-in;Parent=FBtr0086993;parent_type=mRNA" - - - -	6106	13,164,076 – 13,164,180	+	6	116	60.98	-3.05	0.34	0.999287
4458	dm3.chr2R	13,164,076 – 13,164,180		6107	13,164,076 – 13,164,180	-	6	116	60.98	-2.52	0.25	0.970691
4459	dm3.chr2R	13,170,933 – 13,171,033	- - - intron="intron;ID=intron_FBgn0053197:2_FBgn0053197:3;Name=mbl-in;Parent=FBtr0086993;parent_type=mRNA" - - - -	6108	13,170,933 – 13,171,033	-	12	116	76.02	-1.37	0.50	0.540162
4460	dm3.chr2R	13,173,486 – 13,173,549	- - - intron="intron;ID=intron_FBgn0053197:2_FBgn0053197:3;Name=mbl-in;Parent=FBtr0086993;parent_type=mRNA" - - - -	6109	13,173,486 – 13,173,549	-	7	65	83.16	-1.92	0.65	0.775957
4461	dm3.chr2R	13,187,274 – 13,187,387	- - - - - - - -	6110	13,187,274 – 13,187,387	+	5	113	89.80	-2.33	0.66	0.613227
4462	dm3.chr2R	13,187,463 – 13,187,553	- - - - - - - -	6111	13,187,463 – 13,187,553	-	10	103	66.16	-1.50	0.32	0.652045
4463	dm3.chr2R	13,206,719 – 13,206,818	- - - - - - - -	6112	13,206,719 – 13,206,818	+	6	114	74.78	-1.06	0.60	0.512976
4464	dm3.chr2R	13,219,212 – 13,219,321	- - - - - - - -	6113	13,219,212 – 13,219,321	+	4	112	80.60	-1.37	0.75	0.563110
4465	dm3.chr2R	13,227,688 – 13,227,784	- - - - - - - -	6114	13,227,688 – 13,227,784	+	7	115	76.65	-1.33	0.78	0.912581
4466	dm3.chr2R	13,234,977 – 13,235,069	- - - - - - - -	6115	13,234,977 – 13,235,069	+	12	109	69.56	-1.09	0.43	0.657451
4467	dm3.chr2R	13,243,279 – 13,243,371	- - - intron="intron;ID=intron_FBgn0053197:6_FBgn0053197:8;Name=mbl-in;Parent=FBtr0086992;parent_type=mRNA" - - - -	6116	13,243,279 – 13,243,371	+	12	117	81.93	-2.52	0.43	0.756282
4467	dm3.chr2R	13,243,279 – 13,243,371		6117	13,243,279 – 13,243,371	-	12	117	81.93	-2.35	0.49	0.816399
4468	dm3.chr2R	13,262,190 – 13,262,284	- - CDS="CDS;ID=CDS_FBgn0053197:13_584;Name=mbl-cds;Parent=FBtr0290299;parent_type=mRNA" - - - - -	6118	13,262,190 – 13,262,284	-	10	117	70.17	-1.57	0.37	0.550069
4469	dm3.chr2R	13,265,352 – 13,265,407	- - - - - - - -	6119	13,265,352 – 13,265,407	+	5	55	98.55	-0.72	1.02	0.593077
4469	dm3.chr2R	13,265,352 – 13,265,407	- - - - - - - -	6120	13,265,352 – 13,265,407	-	5	55	98.55	-2.24	0.91	0.919736
4470	dm3.chr2R	13,271,702 – 13,271,755	- - - - - - - -	6121	13,271,702 – 13,271,755	-	5	53	96.98	-1.95	0.96	0.944295
4471	dm3.chr2R	13,279,247 – 13,279,357	FBnoncoding="tRNA;ID=FBtr0086965;Name=tRNA:CR30232-RA;Parent=FBgn0050232;Alias=CR30232-RA;Dbxref=FlyBase_Annotation_IDs:CR30232-RA;score_text=Weakly" tRNAscann="Ala_chr2R_trna70" - - "Rfam_10.0=RF00005;tRNA;AAAB01008987.1/4870403-4870474\|1.8e-24" - - -	6122	13,279,247 – 13,279,357	+	13	128	70.68	-0.73	0.68	0.907193
4471	dm3.chr2R	13,279,247 – 13,279,357		6123	13,279,247 – 13,279,357	-	13	128	70.68	-1.50	0.78	0.994205
4472	dm3.chr2R	13,286,607 – 13,286,715	- - - intron="intron;ID=intron_CG10939:1_CG10939:2;Name=Sip1-in;Parent=FBtr0086909;parent_type=mRNA" - - - -	6124	13,286,607 – 13,286,715	+	6	111	75.78	-1.39	0.51	0.517794
4473	dm3.chr2R	13,299,190 – 13,299,281	- - - - - - - -	6125	13,299,190 – 13,299,281	+	3	91	64.79	-1.67	0.60	0.945438
4474	dm3.chr2R	13,307,961 – 13,308,052	- - - - - - - -	6126	13,307,961 – 13,308,052	-	12	117	64.04	-0.35	0.55	0.695505
4475	dm3.chr2R	13,322,757 – 13,322,849	- - - intron="intron;ID=intron_CG6542:1_CG6542:2;Name=EDTP-in;Parent=FBtr0086958;parent_type=mRNA" - - - -	6127	13,322,757 – 13,322,849	+	8	96	63.28	-1.95	0.35	0.973339
4476	dm3.chr2R	13,324,184 – 13,324,276	- - - intron="intron;ID=intron_CG6542:1_CG6542:2;Name=EDTP-in;Parent=FBtr0086958;parent_type=mRNA" - - - -	6128	13,324,184 – 13,324,276	-	11	106	69.21	-0.83	0.56	0.795053
4477	dm3.chr2R	13,324,957 – 13,325,019	- - - intron="intron;ID=intron_CG6542:1_CG6542:2;Name=EDTP-in;Parent=FBtr0086958;parent_type=mRNA" - - - -	6129	13,324,957 – 13,325,019	+	5	74	76.99	-2.06	0.57	0.910935
4478	dm3.chr2R	13,330,695 – 13,330,791	- - - - - - - -	6130	13,330,695 – 13,330,791	-	5	106	90.20	-1.83	0.83	0.773954
4479	dm3.chr2R	13,331,635 – 13,331,736	- - - - - - - -	6131	13,331,635 – 13,331,736	-	6	111	68.92	-1.65	0.45	0.837497
4480	dm3.chr2R	13,347,420 – 13,347,486	- - - intron="intron;ID=intron_CG14478:1_CG14478:2;Name=CG14478-in;Parent=FBtr0086921;parent_type=mRNA" - - - -	6132	13,347,420 – 13,347,486	-	7	69	79.84	-1.82	0.68	0.878283
4481	dm3.chr2R	13,356,659 – 13,356,756	- - - - - - - -	6133	13,356,659 – 13,356,756	+	6	106	66.80	-0.82	0.51	0.668562
4482	dm3.chr2R	13,357,362 – 13,357,456	- - - intron="intron;ID=intron_FBgn0022987:1_FBgn0022987:3;Name=qkr54B-in;Parent=FBtr0086923;parent_type=mRNA" - - - -	6134	13,357,362 – 13,357,456	-	10	109	64.62	-1.09	0.40	0.716222
4483	dm3.chr2R	13,370,029 – 13,370,090	- - - - - - - -	6135	13,370,029 – 13,370,090	-	5	62	71.01	-1.35	0.48	0.615787
4484	dm3.chr2R	13,384,668 – 13,384,725	- - - - - - - -	6136	13,384,668 – 13,384,725	+	6	58	92.44	-2.25	0.86	0.940714
4485	dm3.chr2R	13,388,885 – 13,388,981	- - - - - - - -	6137	13,388,885 – 13,388,981	+	3	96	95.80	-1.46	0.98	0.871803
4486	dm3.chr2R	13,391,170 – 13,391,272	- - - intron="intron;ID=intron_FBgn0262720:2_FBgn0262720:3;Name=CG43164-in;Parent=FBtr0305701,FBtr0305702,FBtr0305704,FBtr0305705;parent_type=mRNA" - - - -	6138	13,391,170 – 13,391,272	+	7	105	75.55	-2.18	0.67	0.985704
4487	dm3.chr2R	13,393,540 – 13,393,630	- - - intron="intron;ID=intron_FBgn0262720:3_FBgn0262720:6;Name=CG43164-in;Parent=FBtr0305704;parent_type=mRNA" - - - -	6139	13,393,540 – 13,393,630	-	4	92	69.16	-2.27	0.30	0.526309
4488	dm3.chr2R	13,412,457 – 13,412,551	- - CDS="CDS;ID=CDS_FBgn0022085:13_572;Name=ssp4-cds;Parent=FBtr0086948;parent_type=mRNA" - - - - -	6140	13,412,457 – 13,412,551	+	6	94	91.28	-1.17	0.93	0.697445
4489	dm3.chr2R	13,414,360 – 13,414,453	- - CDS="CDS;ID=CDS_FBgn0022085:15_573;Name=ssp4-cds;Parent=FBtr0300605;parent_type=mRNA" - - - - -	6141	13,414,360 – 13,414,453	-	13	93	86.89	-2.11	0.64	0.803967
4490	dm3.chr2R	13,426,348 – 13,426,445	- - - - - - - -	6142	13,426,348 – 13,426,445	+	11	108	60.20	-2.80	0.05	0.512489
4491	dm3.chr2R	13,450,116 – 13,450,209	- - - intron="intron;ID=intron_CG15844:7_CG15844:8;Name=Klp54D-in;Parent=FBtr0086826;parent_type=mRNA" - - - -	6143	13,450,116 – 13,450,209	+	12	112	68.08	-4.50	0.20	0.998460
4491	dm3.chr2R	13,450,116 – 13,450,209		6144	13,450,116 – 13,450,209	-	12	112	68.08	-3.71	0.07	0.798813
4492	dm3.chr2R	13,451,405 – 13,451,506	- - CDS="CDS;ID=CDS_CG15844:9_535;Name=Klp54D-cds;Parent=FBtr0086826;parent_type=mRNA" - - - - -	6145	13,451,405 – 13,451,506	+	14	115	67.95	-1.54	0.38	0.843514
4493	dm3.chr2R	13,462,821 – 13,462,878	- - - - - - - -	6146	13,462,821 – 13,462,878	-	5	70	64.44	-3.57	0.18	0.969136
4494	dm3.chr2R	13,478,948 – 13,479,044	- - CDS="CDS;ID=CDS_FBgn0029079:2_628;Name=icln-cds;Parent=FBtr0086832;parent_type=mRNA" - - - - -	6147	13,478,948 – 13,479,044	-	10	114	67.55	-1.57	0.33	0.637183
4495	dm3.chr2R	13,481,428 – 13,481,519	- - CDS="CDS;ID=CDS_CG4943:3_544;Name=lack-cds;Parent=FBtr0086833;parent_type=mRNA" intron="intron;ID=intron_CG4943:2_CG4943:3;Name=lack-in;Parent=FBtr0086833;parent_type=mRNA" - - - -	6148	13,481,428 – 13,481,519	+	11	98	67.52	-0.38	0.54	0.670214
4496	dm3.chr2R	13,485,977 – 13,486,079	- - - intron="intron;ID=intron_CG4943:3_CG4943:4;Name=lack-in;Parent=FBtr0086833;parent_type=mRNA" - - - -	6149	13,485,977 – 13,486,079	-	6	115	81.35	-2.16	0.49	0.514188
4497	dm3.chr2R	13,486,376 – 13,486,435	- - - intron="intron;ID=intron_CG4943:3_CG4943:4;Name=lack-in;Parent=FBtr0086833;parent_type=mRNA" - - - -	6150	13,486,376 – 13,486,435	-	6	60	66.44	-0.43	0.59	0.773255
4498	dm3.chr2R	13,492,036 – 13,492,097	FBnoncoding="tRNA;ID=FBtr0086898;Name=tRNA:CR30333-RA;Parent=FBgn0050333;Alias=CR30333-RA;Dbxref=FlyBase_Annotation_IDs:CR30333-RA;score_text=Weakly" tRNAscann="Phe_chr2R_trna69" - - "Rfam_10.0=RF00005;tRNA;AAPN01177114.1/5440-5512\|3.3e-21" - - -	6151	13,492,036 – 13,492,097	+	7	69	65.70	-0.24	0.64	0.719785
4499	dm3.chr2R	13,500,080 – 13,500,171	- - - intron="intron;ID=intron_CG10936:3_CG10936:4;Name=CG10936-in;Parent=FBtr0086894,FBtr0086895;parent_type=mRNA" - - - -	6152	13,500,080 – 13,500,171	+	6	93	79.01	-2.89	0.48	0.976535
4499	dm3.chr2R	13,500,080 – 13,500,171		6153	13,500,080 – 13,500,171	-	6	93	79.01	-2.75	0.50	0.971886
4500	dm3.chr2R	13,504,250 – 13,504,349	FBnoncoding="snoRNA;ID=FBtr0113512;Name=snoRNA:Or-aca4-RA;Parent=FBgn0082922;Dbxref=FlyBase_Annotation_IDs:CR34543-RA,REFSEQ:NR_003805;score_text=Weakly" - - intron="intron;ID=intron_CG10936:2_CG10936:3;Name=CG10936-in;Parent=FBtr0086894;parent_type=mRNA" - - - -	6154	13,504,250 – 13,504,349	+	11	110	71.33	-1.74	0.40	0.848033
4501	dm3.chr2R	13,536,853 – 13,536,909	- - - intron="intron;ID=intron_FBgn0050106:4_FBgn0050106:3;Name=CCHa1r-in;Parent=FBtr0086893;parent_type=mRNA" - - - -	6155	13,536,853 – 13,536,909	+	5	72	72.44	-1.77	0.53	0.773899
4502	dm3.chr2R	13,540,920 – 13,541,052	- - - intron="intron;ID=intron_FBgn0050106:8_FBgn0050106:7;Name=CCHa1r-in;Parent=FBtr0086893;parent_type=mRNA" - - - -	6156	13,540,920 – 13,541,010	-	7	113	64.33	-2.39	0.45	0.997276
				6157	13,540,944 – 13,541,046	-	8	109	62.11	-1.45	0.52	0.994231
				6158	13,540,954 – 13,541,052	-	7	110	63.68	-1.23	0.38	0.643876
4503	dm3.chr2R	13,542,140 – 13,542,211	- - - - - - - -	6159	13,542,140 – 13,542,211	+	5	77	88.83	-1.77	0.98	0.972343
4504	dm3.chr2R	13,548,114 – 13,548,211	- - - - - - - -	6160	13,548,114 – 13,548,211	+	4	97	84.36	-1.30	0.90	0.824136
4504	dm3.chr2R	13,548,114 – 13,548,211	- - - - - - - -	6161	13,548,114 – 13,548,211	+	4	97	84.36	-1.30	0.90	0.824136
4505	dm3.chr2R	13,553,249 – 13,553,343	- - - - - - - -	6162	13,553,249 – 13,553,343	+	11	104	67.81	-0.78	0.46	0.548678
4505	dm3.chr2R	13,553,249 – 13,553,343	- - - - - - - -	6163	13,553,249 – 13,553,343	-	11	104	67.81	-0.76	0.55	0.847461
4506	dm3.chr2R	13,556,457 – 13,556,550	- - - - - - - -	6164	13,556,457 – 13,556,550	+	12	117	62.30	-3.81	0.44	0.999966
4506	dm3.chr2R	13,556,457 – 13,556,550	- - - - - - - -	6165	13,556,457 – 13,556,550	-	12	117	62.30	-3.36	0.32	0.999521
4507	dm3.chr2R	13,561,634 – 13,561,724	- - - - - - - -	6166	13,561,634 – 13,561,724	+	11	103	60.34	-1.76	0.22	0.650243
4507	dm3.chr2R	13,561,634 – 13,561,724	- - - - - - - -	6167	13,561,634 – 13,561,724	-	11	103	60.34	-1.91	0.52	0.999387
4508	dm3.chr2R	13,568,022 – 13,568,114	- - - - - - - -	6168	13,568,022 – 13,568,114	+	5	92	95.06	-2.10	0.95	0.964061
4508	dm3.chr2R	13,568,022 – 13,568,114	- - - - - - - -	6169	13,568,022 – 13,568,114	-	5	92	95.06	-2.04	0.96	0.964808
4509	dm3.chr2R	13,569,595 – 13,569,697	- - - - - - - -	6170	13,569,595 – 13,569,697	-	8	120	79.81	-2.08	0.48	0.606224
4510	dm3.chr2R	13,595,473 – 13,595,596	- - - - - - - -	6171	13,595,473 – 13,595,569	+	11	108	82.50	-1.31	0.76	0.701664
				6172	13,595,490 – 13,595,596	+	12	116	71.14	-0.74	0.73	0.899715
				6173	13,595,492 – 13,595,596	+	12	116	70.71	-0.98	0.74	0.953341
				6174	13,595,492 – 13,595,596	-	12	116	70.71	-0.82	0.65	0.855001
4511	dm3.chr2R	13,624,642 – 13,624,744	- - - - - - - -	6175	13,624,642 – 13,624,744	-	7	109	71.19	-1.36	0.58	0.936988
4512	dm3.chr2R	13,627,332 – 13,627,453	- - - - - - - -	6176	13,627,332 – 13,627,453	+	6	132	63.07	-2.23	0.29	0.901159
4513	dm3.chr2R	13,654,359 – 13,654,458	- - CDS="CDS;ID=CDS_CG6370:1_528;Name=CG6370-cds;Parent=FBtr0089559;parent_type=mRNA" - - - - -	6177	13,654,359 – 13,654,458	+	12	117	70.12	-1.69	0.50	0.974251
4513	dm3.chr2R	13,654,359 – 13,654,458		6178	13,654,359 – 13,654,458	-	12	117	70.12	-1.23	0.56	0.944202
4514	dm3.chr2R	13,661,851 – 13,661,942	- - - - - - - -	6179	13,661,851 – 13,661,942	-	9	98	57.98	-1.00	0.35	0.819616
4515	dm3.chr2R	13,668,920 – 13,669,023	- - CDS="CDS;ID=CDS_CG33981:2_498;Name=CG33981-cds;Parent=FBtr0100025,FBtr0100026;parent_type=mRNA" - - - - -	6180	13,668,920 – 13,669,023	+	13	112	69.39	-0.88	0.44	0.637171
4516	dm3.chr2R	13,671,286 – 13,671,420	FBnoncoding="pre_miRNA;ID=FBtr0304353;Name=mir-31a-RM;Parent=FBgn0262416;Alias=CR42964-RM;Dbxref=FlyBase_Annotation_IDs:CR42964-RM,miRBase:MI0000420" - - - "Rfam_10.0=RF00661;mir-31;AAGH01011800.1/12109-12196\|1.8e-43" - - "mirBase_v16=dsi-mir-31a\|1.4e-47"	6181	13,671,286 – 13,671,392	+	12	120	84.87	-1.48	0.79	0.792214
				6182	13,671,286 – 13,671,392	-	12	120	84.87	-4.31	0.80	0.999472
				6183	13,671,313 – 13,671,420	+	12	113	74.71	-0.65	0.63	0.680274
				6184	13,671,313 – 13,671,420	-	12	113	74.71	-1.56	0.66	0.986381
4517	dm3.chr2R	13,683,409 – 13,683,520	- - - intron="intron;ID=intron_FBgn0028743:3_FBgn0028743:4;Name=CG5036-in;Parent=FBtr0301142;parent_type=mRNA" - - - -	6185	13,683,409 – 13,683,520	+	7	126	68.99	-1.05	0.48	0.619661
4518	dm3.chr2R	13,691,621 – 13,691,720	- - - intron="intron;ID=intron_FBgn0259211:1_FBgn0259211:2;Name=grh-in;Parent=FBtr0299705,FBtr0299706,FBtr0300538,FBtr0300539;parent_type=mRNA" - - - -	6186	13,691,621 – 13,691,720	-	5	107	94.12	-2.04	0.92	0.939541
4519	dm3.chr2R	13,722,467 – 13,722,636	- - - intron="intron;ID=intron_FBgn0259211:14_FBgn0259211:15;Name=grh-in;Parent=FBtr0299705,FBtr0299706,FBtr0299707,FBtr0300538,FBtr0300539,FBtr0300540,FBtr0300541;parent_type=mRNA" - - - -	6187	13,722,467 – 13,722,568	-	6	113	68.86	-1.38	0.47	0.735367
4519	dm3.chr2R	13,722,467 – 13,722,636		6188	13,722,534 – 13,722,636	+	4	107	66.39	-1.65	0.72	0.986483
4520	dm3.chr2R	13,725,506 – 13,725,613	- - - intron="intron;ID=intron_FBgn0259211:15_FBgn0259211:17;Name=grh-in;Parent=FBtr0299705,FBtr0299706,FBtr0299707,FBtr0300541;parent_type=mRNA" - - - -	6189	13,725,506 – 13,725,613	+	3	107	90.00	-1.38	1.00	0.930529
4521	dm3.chr2R	13,738,302 – 13,738,368	- - - intron="intron;ID=intron_FBgn0041585:2_FBgn0041585:4;Name=olf186-F-in;Parent=FBtr0086795;parent_type=mRNA" - - - -	6190	13,738,302 – 13,738,368	+	7	80	68.41	-2.05	0.30	0.573151
4522	dm3.chr2R	13,743,453 – 13,743,564	- - - intron="intron;ID=intron_FBgn0041585:5_FBgn0041585:8;Name=olf186-F-in;Parent=FBtr0086798;parent_type=mRNA" - - - -	6191	13,743,453 – 13,743,564	-	5	116	74.20	-1.93	0.47	0.741965
4523	dm3.chr2R	13,761,259 – 13,761,310	- - - - - - - -	6192	13,761,259 – 13,761,310	+	4	51	95.75	-1.84	0.90	0.812100
4523	dm3.chr2R	13,761,259 – 13,761,310	- - - - - - - -	6193	13,761,259 – 13,761,310	-	4	51	95.75	-1.16	1.01	0.853942
4524	dm3.chr2R	13,767,086 – 13,767,259	- - CDS="CDS;ID=CDS_CG30325:1_527;Name=CG30325-cds;Parent=FBtr0086821;parent_type=mRNA" intron="intron;ID=intron_CG5076:2_CG5076:3;Name=elk-in;Parent=FBtr0086802;parent_type=mRNA" - - - -	6194	13,767,086 – 13,767,179	+	9	111	48.00	-1.47	0.19	0.711529
				6195	13,767,112 – 13,767,219	+	10	116	57.58	-1.04	0.33	0.762194
				6196	13,767,139 – 13,767,259	+	10	120	64.87	-2.06	0.21	0.719379
4525	dm3.chr2R	13,768,571 – 13,768,670	- - CDS="CDS;ID=CDS_CG30110:1_522;Name=CG30110-cds;Parent=FBtr0086820;parent_type=mRNA" intron="intron;ID=intron_CG5076:2_CG5076:3;Name=elk-in;Parent=FBtr0086802;parent_type=mRNA" - - - -	6197	13,768,571 – 13,768,670	+	5	111	65.51	-1.09	0.47	0.539865
4526	dm3.chr2R	13,769,565 – 13,769,699	- - - intron="intron;ID=intron_CG5076:2_CG5076:3;Name=elk-in;Parent=FBtr0086802;parent_type=mRNA" - - - -	6198	13,769,565 – 13,769,673	+	6	116	69.86	-1.12	0.47	0.578748
				6199	13,769,565 – 13,769,673	-	6	116	69.86	-0.71	0.62	0.746958
				6200	13,769,603 – 13,769,699	+	6	116	64.91	-1.03	0.45	0.567863
4527	dm3.chr2R	13,778,217 – 13,778,322	- - - - - - - -	6201	13,778,217 – 13,778,322	-	6	113	87.89	-3.89	0.54	0.991598
4528	dm3.chr2R	13,783,501 – 13,783,552	- - - - - - - -	6202	13,783,501 – 13,783,552	+	8	51	97.48	-2.47	0.99	0.990323
4528	dm3.chr2R	13,783,501 – 13,783,552	- - - - - - - -	6203	13,783,501 – 13,783,552	-	8	51	97.48	-1.57	0.99	0.917431
4529	dm3.chr2R	13,791,780 – 13,791,877	- - - intron="intron;ID=intron_CG5076:6_CG5076:7;Name=elk-in;Parent=FBtr0086802;parent_type=mRNA" - - - -	6204	13,791,780 – 13,791,877	+	6	115	75.78	-2.44	0.68	0.994383
4529	dm3.chr2R	13,791,780 – 13,791,877		6205	13,791,780 – 13,791,877	-	6	115	75.78	-2.46	0.65	0.993383
4530	dm3.chr2R	13,797,557 – 13,797,653	- - - intron="intron;ID=intron_CG5076:9_CG5076:10;Name=elk-in;Parent=FBtr0086802;parent_type=mRNA" - - - -	6206	13,797,557 – 13,797,653	-	5	117	61.98	-0.31	0.58	0.549734
4531	dm3.chr2R	13,802,696 – 13,802,798	- - - intron="intron;ID=intron_CG5076:12_CG5076:13;Name=elk-in;Parent=FBtr0086802;parent_type=mRNA" - - - -	6207	13,802,696 – 13,802,798	+	9	107	68.83	-1.33	0.44	0.761112
4532	dm3.chr2R	13,809,115 – 13,809,194	- - - intron="intron;ID=intron_CG5076:15_CG5076:16;Name=elk-in;Parent=FBtr0086802;parent_type=mRNA" - - - -	6208	13,809,115 – 13,809,194	-	9	86	67.25	-1.07	0.46	0.745620
4533	dm3.chr2R	13,810,142 – 13,810,223	- - - intron="intron;ID=intron_CG5076:16_CG5076:17;Name=elk-in;Parent=FBtr0086802;parent_type=mRNA" - - - -	6209	13,810,142 – 13,810,223	+	9	85	83.74	-1.90	0.57	0.529234
4534	dm3.chr2R	13,812,618 – 13,812,708	- - CDS="CDS;ID=CDS_CG5076:17_499;Name=elk-cds;Parent=FBtr0086802;parent_type=mRNA" - - - - -	6210	13,812,618 – 13,812,708	-	12	107	71.94	-1.10	0.47	0.574385
4535	dm3.chr2R	13,821,379 – 13,821,497	- - - - - - - -	6211	13,821,379 – 13,821,497	+	5	120	81.80	-2.24	0.62	0.887772
4536	dm3.chr2R	13,825,313 – 13,825,411	- - - - - - - -	6212	13,825,313 – 13,825,411	-	12	116	78.27	-2.28	0.68	0.989498
4537	dm3.chr2R	13,845,569 – 13,845,641	- - - - - - - -	6213	13,845,569 – 13,845,641	-	3	81	54.70	-0.97	0.63	0.933244
4538	dm3.chr2R	13,845,888 – 13,845,994	- - - - - - - -	6214	13,845,888 – 13,845,994	-	5	106	74.21	-1.18	0.70	0.747987
4539	dm3.chr2R	13,849,566 – 13,849,683	- - - - - - - -	6215	13,849,566 – 13,849,683	+	8	120	81.11	-1.73	0.58	0.568113
4540	dm3.chr2R	13,855,182 – 13,855,336	- - - - - - - -	6216	13,855,182 – 13,855,290	+	6	119	84.40	-2.22	0.64	0.832173
				6217	13,855,182 – 13,855,290	-	6	119	84.40	-2.67	0.63	0.953228
				6218	13,855,221 – 13,855,324	+	6	115	82.07	-2.72	0.67	0.986392
				6219	13,855,221 – 13,855,324	-	6	115	82.07	-3.22	0.60	0.993769
				6220	13,855,233 – 13,855,336	+	6	114	78.69	-2.37	0.58	0.960380
				6221	13,855,233 – 13,855,336	-	6	114	78.69	-3.66	0.55	0.998698
4541	dm3.chr2R	13,864,334 – 13,864,461	- - - intron="intron;ID=intron_FBgn0034286:2_FBgn0034286:1;Name=dpr13-in;Parent=FBtr0300215;parent_type=mRNA" - - - -	6222	13,864,334 – 13,864,435	+	9	115	84.39	-1.73	0.78	0.878691
4541	dm3.chr2R	13,864,334 – 13,864,461		6223	13,864,359 – 13,864,461	+	11	113	72.36	-0.95	0.64	0.910344
4542	dm3.chr2R	13,865,816 – 13,865,907	- - - intron="intron;ID=intron_FBgn0034286:4_FBgn0034286:3;Name=dpr13-in;Parent=FBtr0300215;parent_type=mRNA" - - - -	6224	13,865,816 – 13,865,907	-	9	99	91.72	-1.47	0.93	0.861200
4543	dm3.chr2R	13,875,127 – 13,875,202	- - - intron="intron;ID=intron_FBgn0034286:6_FBgn0034286:5;Name=dpr13-in;Parent=FBtr0300215;parent_type=mRNA" - - - -	6225	13,875,127 – 13,875,202	+	7	75	70.34	-1.97	0.31	0.670715
4544	dm3.chr2R	13,879,387 – 13,879,443	- - - intron="intron;ID=intron_FBgn0034286:7_FBgn0034286:6;Name=dpr13-in;Parent=FBtr0300215;parent_type=mRNA" - - - -	6226	13,879,387 – 13,879,443	-	11	57	83.97	-1.82	0.66	0.732106
4545	dm3.chr2R	13,880,998 – 13,881,098	- - - intron="intron;ID=intron_FBgn0034286:7_FBgn0034286:6;Name=dpr13-in;Parent=FBtr0300215;parent_type=mRNA" - - - -	6227	13,880,998 – 13,881,098	-	12	115	71.85	-1.52	0.53	0.938576
4546	dm3.chr2R	13,890,645 – 13,890,761	- - - intron="intron;ID=intron_FBgn0034286:7_FBgn0034286:6;Name=dpr13-in;Parent=FBtr0300215;parent_type=mRNA" - - - -	6228	13,890,645 – 13,890,761	+	8	117	71.15	-1.56	0.51	0.902593
4546	dm3.chr2R	13,890,645 – 13,890,761		6229	13,890,645 – 13,890,761	-	8	117	71.15	-1.94	0.53	0.979915
4547	dm3.chr2R	13,898,891 – 13,898,977	- - - - - - - -	6230	13,898,891 – 13,898,977	+	11	98	78.16	-1.98	0.58	0.952140
4547	dm3.chr2R	13,898,891 – 13,898,977	- - - - - - - -	6231	13,898,891 – 13,898,977	-	11	98	78.16	-1.93	0.50	0.843113
4548	dm3.chr2R	13,915,816 – 13,915,940	- - - - - - - -	6232	13,915,816 – 13,915,924	+	3	110	91.52	-1.90	0.83	0.702957
				6233	13,915,816 – 13,915,924	-	3	110	91.52	-2.52	0.91	0.981868
				6234	13,915,828 – 13,915,940	+	3	114	90.35	-2.03	0.81	0.763965
				6235	13,915,828 – 13,915,940	-	3	114	90.35	-2.81	0.91	0.991852
4549	dm3.chr2R	13,942,046 – 13,942,137	- - - - - - - -	6236	13,942,046 – 13,942,137	-	5	106	69.14	-1.92	0.50	0.945437
4550	dm3.chr2R	13,943,138 – 13,943,214	- - - - - - - -	6237	13,943,138 – 13,943,214	+	7	93	75.38	-1.94	0.45	0.642719
4551	dm3.chr2R	13,956,720 – 13,956,852	- - - intron="intron;ID=intron_FBgn0085415:1_FBgn0085415:2;Name=CG34386-in;Parent=FBtr0112627;parent_type=mRNA" - - - -	6238	13,956,720 – 13,956,852	-	7	144	73.35	-2.40	0.51	0.991711
4552	dm3.chr2R	13,966,671 – 13,966,844	- - - intron="intron;ID=intron_FBgn0085415:1_FBgn0085415:2;Name=CG34386-in;Parent=FBtr0112627;parent_type=mRNA" - - - -	6239	13,966,671 – 13,966,844	+	6	175	75.81	-1.75	0.44	0.546007
4553	dm3.chr2R	13,971,868 – 13,971,963	- - - intron="intron;ID=intron_FBgn0085415:1_FBgn0085415:2;Name=CG34386-in;Parent=FBtr0112627;parent_type=mRNA" - - - -	6240	13,971,868 – 13,971,963	+	4	99	55.99	-2.58	0.21	0.848090
4553	dm3.chr2R	13,971,868 – 13,971,963		6241	13,971,868 – 13,971,963	-	4	99	55.99	-1.71	0.31	0.711141
4554	dm3.chr2R	13,977,197 – 13,977,342	- - - intron="intron;ID=intron_FBgn0085415:1_FBgn0085415:2;Name=CG34386-in;Parent=FBtr0112627;parent_type=mRNA" - - - -	6242	13,977,197 – 13,977,342	+	6	148	76.86	-1.54	0.59	0.731326
4555	dm3.chr2R	13,980,489 – 13,980,584	- - CDS="CDS;ID=CDS_FBgn0085415:4_576;Name=CG34386-cds;Parent=FBtr0112627;parent_type=mRNA" - - - - -	6243	13,980,489 – 13,980,584	+	11	105	71.18	-0.61	0.56	0.519567
4556	dm3.chr2R	14,004,730 – 14,004,781	- - - - - - - -	6244	14,004,730 – 14,004,781	+	3	55	54.04	-1.13	0.59	0.963003
4557	dm3.chr2R	14,030,297 – 14,030,470	FBnoncoding="snoRNA;ID=FBtr0113513;Name=snoRNA:Psi18S-1347a-RA;Parent=FBgn0083054;Dbxref=FlyBase_Annotation_IDs:CR34544-RA,REFSEQ:NR_003806;score_text=Weakly" - - intron="intron;ID=intron_FBgn0003031:9_FBgn0003031:11;Name=pAbp-in;Parent=FBtr0086736,FBtr0086743,FBtr0086740,FBtr0086739,FBtr0086737;parent_type=mRNA" - - - -	6245	14,030,297 – 14,030,404	+	12	115	74.47	-1.88	0.50	0.961504
4557	dm3.chr2R	14,030,297 – 14,030,470		6246	14,030,370 – 14,030,470	+	12	108	62.19	-1.49	0.42	0.981602
4558	dm3.chr2R	14,030,503 – 14,030,618	FBnoncoding="snoRNA;ID=FBtr0113514;Name=snoRNA:Psi18S-1347b-RA;Parent=FBgn0083053;Dbxref=FlyBase_Annotation_IDs:CR34545-RA,REFSEQ:NR_003807;score_text=Weakly" - - intron="intron;ID=intron_FBgn0003031:9_FBgn0003031:11;Name=pAbp-in;Parent=FBtr0086736,FBtr0086743,FBtr0086740,FBtr0086739,FBtr0086737;parent_type=mRNA" - - - -	6247	14,030,503 – 14,030,618	+	12	127	71.38	-1.77	0.35	0.750185
4559	dm3.chr2R	14,030,682 – 14,030,826	FBnoncoding="snoRNA;ID=FBtr0091610;Name=snoRNA:Psi18S-1347c-RA;Parent=FBgn0086600;Alias=snoRNA:203-RA;Dbxref=FlyBase_Annotation_IDs:CR33633-RA,REFSEQ:NR_002546;score_text=Weakly" - - intron="intron;ID=intron_FBgn0003031:9_FBgn0003031:11;Name=pAbp-in;Parent=FBtr0086736,FBtr0086743,FBtr0086740,FBtr0086739,FBtr0086737;parent_type=mRNA" - "Noncode_2.0=n3516_u3144_AJ544014_snoRNA_Drosophila\|3.7e-20" "unique_Noncode_2.0=u3144_snoRNA_Drosophila\|3.2e-20" -	6248	14,030,682 – 14,030,826	+	12	178	72.10	-2.49	0.41	0.975135
4560	dm3.chr2R	14,036,546 – 14,036,646	- - - - - - - -	6249	14,036,546 – 14,036,646	-	6	110	75.38	-0.98	0.65	0.550659
4561	dm3.chr2R	14,048,236 – 14,048,336	- - - - - - - -	6250	14,048,236 – 14,048,336	-	7	104	74.43	-2.51	0.31	0.722987
4562	dm3.chr2R	14,050,852 – 14,050,962	- - CDS="CDS;ID=CDS_CG10915:4_501;Name=CG10915-cds;Parent=FBtr0086746;parent_type=mRNA" - - - - -	6251	14,050,852 – 14,050,962	-	13	111	77.30	-1.77	0.40	0.688016
4563	dm3.chr2R	14,059,670 – 14,059,777	- - - - - - - -	6252	14,059,670 – 14,059,777	-	7	109	59.27	-2.53	0.12	0.744663
4564	dm3.chr2R	14,081,803 – 14,081,927	- - - - - - - -	6253	14,081,803 – 14,081,927	+	7	137	67.96	-2.06	0.30	0.634567
4565	dm3.chr2R	14,106,486 – 14,106,698	- - - - - - - -	6254	14,106,486 – 14,106,601	-	11	116	80.82	-1.17	0.67	0.580216
				6255	14,106,526 – 14,106,634	+	6	108	78.42	-1.41	0.90	0.951856
				6256	14,106,601 – 14,106,698	+	5	105	81.76	-1.90	0.70	0.802396
4566	dm3.chr2R	14,110,843 – 14,110,940	- - - - - - - -	6257	14,110,843 – 14,110,940	-	6	99	93.87	-1.45	0.88	0.568981
4567	dm3.chr2R	14,116,872 – 14,116,972	- - - - - - - -	6258	14,116,872 – 14,116,972	+	12	116	88.52	-1.81	0.82	0.859686
4568	dm3.chr2R	14,131,662 – 14,131,740	- - - - - - - -	6259	14,131,662 – 14,131,740	+	4	87	64.91	-1.43	0.45	0.741309
4568	dm3.chr2R	14,131,662 – 14,131,740	- - - - - - - -	6260	14,131,662 – 14,131,740	-	4	87	64.91	-1.37	0.54	0.914800
4569	dm3.chr2R	14,142,586 – 14,142,710	- - - - - - - -	6261	14,142,586 – 14,142,687	+	11	116	68.89	-2.83	0.48	0.999398
				6262	14,142,586 – 14,142,687	-	11	116	68.89	-1.44	0.45	0.911889
				6263	14,142,612 – 14,142,710	+	7	114	70.57	-2.57	0.49	0.994534
4570	dm3.chr2R	14,153,034 – 14,153,144	- - - - - - - -	6264	14,153,034 – 14,153,144	-	12	117	88.24	-2.33	0.63	0.761843
4571	dm3.chr2R	14,165,427 – 14,165,547	- - CDS="CDS;ID=CDS_CG33198:3_535;Name=pen-2-cds;Parent=FBtr0089842;parent_type=mRNA" - - - - -	6265	14,165,427 – 14,165,547	-	14	120	72.20	-1.04	0.49	0.835100
4572	dm3.chr2R	14,167,614 – 14,167,696	- - CDS="CDS;ID=CDS_FBgn0010575:1_617;Name=sbb-cds;Parent=FBtr0301550,FBtr0301551;parent_type=mRNA" - - - - -	6266	14,167,614 – 14,167,696	-	14	87	77.89	-0.69	0.65	0.545977
4573	dm3.chr2R	14,173,368 – 14,173,489	- - CDS="CDS;ID=CDS_FBgn0010575:9_617;Name=sbb-cds;Parent=FBtr0301550,FBtr0301551;parent_type=mRNA" - - - - -	6267	14,173,368 – 14,173,468	+	9	100	75.79	-1.73	0.59	0.957631
				6268	14,173,368 – 14,173,468	-	9	100	75.79	-1.30	0.49	0.500000
				6269	14,173,398 – 14,173,489	+	12	110	62.36	-1.45	0.39	0.908678
4574	dm3.chr2R	14,178,705 – 14,178,795	- - - intron="intron;ID=intron_FBgn0010575:16_FBgn0010575:13;Name=sbb-in;Parent=FBtr0301547;parent_type=mRNA" - - - -	6270	14,178,705 – 14,178,795	+	5	93	94.07	-1.48	0.89	0.612475
4574	dm3.chr2R	14,178,705 – 14,178,795		6271	14,178,705 – 14,178,795	-	5	93	94.07	-1.53	0.96	0.886759
4575	dm3.chr2R	14,179,907 – 14,180,054	- - - intron="intron;ID=intron_FBgn0010575:16_FBgn0010575:13;Name=sbb-in;Parent=FBtr0301547;parent_type=mRNA" - - - -	6272	14,179,907 – 14,180,054	-	7	151	72.78	-2.24	0.44	0.938083
4576	dm3.chr2R	14,194,578 – 14,194,685	- - - - - - - -	6273	14,194,578 – 14,194,685	+	10	119	88.54	-3.26	0.82	0.996592
4577	dm3.chr2R	14,201,712 – 14,201,804	- - - - - - - -	6274	14,201,712 – 14,201,804	-	5	99	90.20	-1.43	0.86	0.610071
4578	dm3.chr2R	14,219,467 – 14,219,538	- - - - - - - -	6275	14,219,467 – 14,219,538	-	10	77	70.24	-0.77	0.52	0.541002
4579	dm3.chr2R	14,223,012 – 14,223,102	- - - - - - - -	6276	14,223,012 – 14,223,102	+	8	111	74.09	-1.40	0.68	0.894481
4580	dm3.chr2R	14,229,608 – 14,229,764	- - - - - - - -	6277	14,229,608 – 14,229,724	-	5	116	89.22	-1.77	0.78	0.633607
4580	dm3.chr2R	14,229,608 – 14,229,764	- - - - - - - -	6278	14,229,648 – 14,229,764	-	5	116	90.07	-2.23	0.84	0.937999
4581	dm3.chr2R	14,229,916 – 14,230,005	- - - - - - - -	6279	14,229,916 – 14,230,005	-	5	91	63.67	-0.99	0.48	0.771511
4582	dm3.chr2R	14,260,084 – 14,260,151	- - - - - - - -	6280	14,260,084 – 14,260,151	+	3	67	79.68	-1.58	0.89	0.911147
4583	dm3.chr2R	14,260,617 – 14,260,762	- - - - - - - -	6281	14,260,617 – 14,260,762	+	4	159	63.01	-1.59	0.43	0.809568
4584	dm3.chr2R	14,264,391 – 14,264,449	- - - - - - - -	6282	14,264,391 – 14,264,449	-	5	58	93.79	-1.16	0.97	0.765242
4585	dm3.chr2R	14,279,150 – 14,279,202	- - - - - - - -	6283	14,279,150 – 14,279,202	+	5	53	94.47	-1.89	0.93	0.923742
4586	dm3.chr2R	14,289,447 – 14,289,503	- - - - - - - -	6284	14,289,447 – 14,289,503	-	4	56	89.79	-3.86	0.89	0.998568
4587	dm3.chr2R	14,301,173 – 14,301,263	- - - intron="intron;ID=intron_CG5170:1_CG5170:9;Name=Dp1-in;Parent=FBtr0086681;parent_type=mRNA" - - - -	6285	14,301,173 – 14,301,263	+	5	99	69.52	-1.85	0.41	0.755395
4588	dm3.chr2R	14,310,528 – 14,310,631	- - - intron="intron;ID=intron_FBgn0034345:2_FBgn0034345:4;Name=CG5174-in;Parent=FBtr0301148;parent_type=mRNA" - - - -	6286	14,310,528 – 14,310,631	+	5	103	79.78	-1.46	0.85	0.900941
4589	dm3.chr2R	14,313,917 – 14,314,011	- - - - - - - -	6287	14,313,917 – 14,314,011	+	7	97	67.14	-0.76	0.47	0.583761
4590	dm3.chr2R	14,314,086 – 14,314,183	- - - - - - - -	6288	14,314,086 – 14,314,183	+	7	113	74.15	-1.89	0.46	0.722479
4591	dm3.chr2R	14,323,128 – 14,323,228	- - - intron="intron;ID=intron_FBgn0050118:8_FBgn0050118:7;Name=CG30118-in;Parent=FBtr0113361;parent_type=mRNA" - - - -	6289	14,323,128 – 14,323,228	+	8	109	65.21	-1.15	0.36	0.548470
4592	dm3.chr2R	14,327,989 – 14,328,056	- - - - - - - -	6290	14,327,989 – 14,328,056	+	5	75	76.78	-1.80	0.54	0.632078
4592	dm3.chr2R	14,327,989 – 14,328,056	- - - - - - - -	6291	14,327,989 – 14,328,056	-	5	75	76.78	-1.88	0.54	0.703308
4593	dm3.chr2R	14,328,366 – 14,328,441	- - - - - - - -	6292	14,328,366 – 14,328,441	+	4	86	61.49	-1.50	0.44	0.861627
4593	dm3.chr2R	14,328,366 – 14,328,441	- - - - - - - -	6293	14,328,366 – 14,328,441	-	4	86	61.49	-1.91	0.34	0.779869
4594	dm3.chr2R	14,356,871 – 14,356,971	- - - intron="intron;ID=intron_CG30116:9_CG30116:10;Name=CG30116-in;Parent=FBtr0086718,FBtr0086719,FBtr0086720,FBtr0086721;parent_type=mRNA" - - - -	6294	14,356,871 – 14,356,971	+	6	108	82.73	-2.32	0.67	0.941775
4595	dm3.chr2R	14,368,465 – 14,368,558	- - - intron="intron;ID=intron_CG30116:2_CG30116:3;Name=CG30116-in;Parent=FBtr0086718,FBtr0086719;parent_type=mRNA" - - - -	6295	14,368,465 – 14,368,558	-	7	97	79.61	-1.29	0.68	0.723275
4596	dm3.chr2R	14,385,837 – 14,385,951	- - - - - - - -	6296	14,385,837 – 14,385,928	+	8	117	66.54	-2.02	0.42	0.961150
				6297	14,385,837 – 14,385,928	-	8	117	66.54	-2.29	0.44	0.989543
				6298	14,385,853 – 14,385,951	+	6	118	79.86	-2.19	0.81	0.985053
				6299	14,385,853 – 14,385,951	-	6	118	79.86	-1.44	0.74	0.755301
4597	dm3.chr2R	14,423,134 – 14,423,234	- - - - - - - -	6300	14,423,134 – 14,423,234	+	3	105	50.64	-1.87	0.25	0.588484
4598	dm3.chr2R	14,449,144 – 14,449,259	- - - intron="intron;ID=intron_FBgn0050115:8_FBgn0050115:7;Name=CG30115-in;Parent=FBtr0300421;parent_type=mRNA" - - - -	6301	14,449,144 – 14,449,236	+	5	95	66.96	-1.76	0.43	0.894490
4598	dm3.chr2R	14,449,144 – 14,449,259		6302	14,449,163 – 14,449,259	+	4	98	65.02	-2.18	0.55	0.996150
4599	dm3.chr2R	14,455,381 – 14,455,488	- - - intron="intron;ID=intron_FBgn0050115:8_FBgn0050115:7;Name=CG30115-in;Parent=FBtr0300421;parent_type=mRNA" - - - -	6303	14,455,381 – 14,455,488	+	5	112	90.55	-1.77	0.89	0.885122
4599	dm3.chr2R	14,455,381 – 14,455,488		6304	14,455,381 – 14,455,488	-	5	112	90.55	-1.73	0.92	0.918078
4600	dm3.chr2R	14,456,645 – 14,456,757	- - - intron="intron;ID=intron_FBgn0050115:8_FBgn0050115:7;Name=CG30115-in;Parent=FBtr0300421;parent_type=mRNA" - - - -	6305	14,456,645 – 14,456,757	+	5	121	74.64	-1.84	0.56	0.872209
4600	dm3.chr2R	14,456,645 – 14,456,757		6306	14,456,645 – 14,456,757	-	5	121	74.64	-2.13	0.56	0.949709
4601	dm3.chr2R	14,461,269 – 14,461,406	- - - intron="intron;ID=intron_FBgn0050115:8_FBgn0050115:7;Name=CG30115-in;Parent=FBtr0300421;parent_type=mRNA" - - - -	6307	14,461,269 – 14,461,373	+	7	107	63.79	-1.40	0.59	0.994627
4601	dm3.chr2R	14,461,269 – 14,461,406		6308	14,461,308 – 14,461,406	+	8	103	71.71	-2.57	0.40	0.991285
4602	dm3.chr2R	14,478,856 – 14,478,921	- - - intron="intron;ID=intron_FBgn0050115:8_FBgn0050115:7;Name=CG30115-in;Parent=FBtr0300421;parent_type=mRNA" - - - -	6309	14,478,856 – 14,478,921	+	4	65	52.56	-1.08	0.40	0.893183
4602	dm3.chr2R	14,478,856 – 14,478,921		6310	14,478,856 – 14,478,921	-	4	65	52.56	-0.95	0.64	0.994847
4603	dm3.chr2R	14,489,227 – 14,489,375	- - - intron="intron;ID=intron_FBgn0050115:8_FBgn0050115:7;Name=CG30115-in;Parent=FBtr0300421;parent_type=mRNA" - - - -	6311	14,489,227 – 14,489,375	-	7	166	69.56	-1.53	0.41	0.542535
4604	dm3.chr2R	14,493,572 – 14,493,684	- - - intron="intron;ID=intron_FBgn0050115:8_FBgn0050115:7;Name=CG30115-in;Parent=FBtr0300421;parent_type=mRNA" - - - -	6312	14,493,572 – 14,493,684	-	7	120	65.66	-1.45	0.36	0.512085
4605	dm3.chr2R	14,499,268 – 14,499,375	- - - - - - - -	6313	14,499,268 – 14,499,375	+	3	107	95.62	-1.57	0.95	0.833470
4605	dm3.chr2R	14,499,268 – 14,499,375	- - - - - - - -	6314	14,499,268 – 14,499,375	-	3	107	95.62	-1.31	0.92	0.522702
4606	dm3.chr2R	14,506,838 – 14,506,932	- - - - - - - -	6315	14,506,838 – 14,506,932	-	12	117	69.75	-1.12	0.46	0.554765
4607	dm3.chr2R	14,512,522 – 14,512,596	- - - - - - - -	6316	14,512,522 – 14,512,596	-	6	74	64.35	-0.90	0.44	0.734900
4608	dm3.chr2R	14,520,381 – 14,520,471	- - CDS="CDS;ID=CDS_FBgn0050122:1_606;Name=CG30122-cds;Parent=FBtr0300924;parent_type=mRNA" - - - - -	6317	14,520,381 – 14,520,471	+	11	93	74.72	-1.36	0.52	0.859908
4608	dm3.chr2R	14,520,381 – 14,520,471		6318	14,520,381 – 14,520,471	-	11	93	74.72	-1.07	0.52	0.661875
4609	dm3.chr2R	14,520,993 – 14,521,126	- - CDS="CDS;ID=CDS_FBgn0050122:7_606;Name=CG30122-cds;Parent=FBtr0086660,FBtr0300923,FBtr0300924;parent_type=mRNA" - - - - -	6319	14,520,993 – 14,521,104	+	14	119	75.65	-2.24	0.59	0.997226
				6320	14,520,993 – 14,521,104	-	14	119	75.65	-2.54	0.60	0.998889
				6321	14,521,031 – 14,521,126	+	14	109	76.33	-2.84	0.67	0.999272
				6322	14,521,031 – 14,521,126	-	14	109	76.33	-2.98	0.61	0.999313
4610	dm3.chr2R	14,524,510 – 14,524,605	- - CDS="CDS;ID=CDS_FBgn0050122:12_606;Name=CG30122-cds;Parent=FBtr0086660,FBtr0300923,FBtr0300924;parent_type=mRNA" - - - - -	6323	14,524,510 – 14,524,605	-	7	109	68.64	-1.59	0.55	0.973417
4611	dm3.chr2R	14,527,061 – 14,527,150	FBnoncoding="tRNA;ID=FBtr0086603;Name=tRNA:CR30227-RA;Parent=FBgn0050227;Alias=CR30227-RA;Dbxref=FlyBase_Annotation_IDs:CR30227-RA;score_text=Weakly" tRNAscann="Trp_chr2R_trna31" - - "Rfam_10.0=RF00005;tRNA;AACT01024226.1/911-979\|5.9e-30" - - -	6324	14,527,061 – 14,527,150	+	11	97	80.00	-0.85	1.00	0.913879
4611	dm3.chr2R	14,527,061 – 14,527,150		6325	14,527,061 – 14,527,150	-	11	97	80.00	-0.36	1.02	0.752322
4612	dm3.chr2R	14,549,821 – 14,549,883	- - - - - - - -	6326	14,549,821 – 14,549,883	-	6	63	77.01	-1.22	0.63	0.611170
4613	dm3.chr2R	14,558,276 – 14,558,381	- - - intron="intron;ID=intron_CG15085:1_CG15085:2;Name=edl-in;Parent=FBtr0086652;parent_type=mRNA" - - - -	6327	14,558,276 – 14,558,381	+	12	115	85.67	-2.05	0.79	0.940165
4613	dm3.chr2R	14,558,276 – 14,558,381		6328	14,558,276 – 14,558,381	-	12	115	85.67	-1.78	0.85	0.933609
4614	dm3.chr2R	14,561,510 – 14,561,609	- - - - - - - -	6329	14,561,510 – 14,561,609	+	8	104	56.06	-1.63	0.23	0.753132
4615	dm3.chr2R	14,574,679 – 14,574,770	- - - - - - - -	6330	14,574,679 – 14,574,770	+	6	95	82.53	-1.96	0.69	0.887476
4615	dm3.chr2R	14,574,679 – 14,574,770	- - - - - - - -	6331	14,574,679 – 14,574,770	-	6	95	82.53	-1.95	0.66	0.839658
4616	dm3.chr2R	14,583,061 – 14,583,175	- - - intron="intron;ID=intron_FBgn0262103:5_FBgn0262103:6;Name=CG42856-in;Parent=FBtr0304025;parent_type=mRNA" - - - -	6332	14,583,061 – 14,583,175	-	4	116	71.30	-2.06	0.67	0.987817
4617	dm3.chr2R	14,601,035 – 14,601,109	- - - - - - - -	6333	14,601,035 – 14,601,109	-	5	74	74.46	-1.06	0.62	0.585784
4618	dm3.chr2R	14,601,331 – 14,601,470	- - - - - - - -	6334	14,601,331 – 14,601,470	+	6	140	72.87	-1.10	0.56	0.612212
4618	dm3.chr2R	14,601,331 – 14,601,470	- - - - - - - -	6335	14,601,331 – 14,601,470	-	6	140	72.87	-1.55	0.56	0.899394
4619	dm3.chr2R	14,603,676 – 14,603,770	- - - - - - - -	6336	14,603,676 – 14,603,770	-	4	94	76.38	-2.36	0.54	0.912160
4620	dm3.chr2R	14,626,980 – 14,627,079	- - - - - - - -	6337	14,626,980 – 14,627,079	+	3	120	75.81	-3.08	0.76	0.996980
4620	dm3.chr2R	14,626,980 – 14,627,079	- - - - - - - -	6338	14,626,980 – 14,627,079	-	3	120	75.81	-2.15	0.66	0.903832
4621	dm3.chr2R	14,634,806 – 14,634,898	- - - intron="intron;ID=intron_FBgn0053147:4_FBgn0053147:5;Name=Hs3st-A-in;Parent=FBtr0086608;parent_type=mRNA" - - - -	6339	14,634,806 – 14,634,898	+	7	99	90.78	-1.67	0.79	0.535445
4621	dm3.chr2R	14,634,806 – 14,634,898		6340	14,634,806 – 14,634,898	-	7	99	90.78	-1.70	0.82	0.682460
4622	dm3.chr2R	14,643,833 – 14,643,924	- - - intron="intron;ID=intron_FBgn0034387:5_FBgn0034387:6;Name=Cyp12b2-in;Parent=FBtr0086609;parent_type=mRNA" - - - -	6341	14,643,833 – 14,643,924	+	14	109	57.81	-0.42	0.43	0.756977
4623	dm3.chr2R	14,672,001 – 14,672,103	- - - intron="intron;ID=intron_CG15080:1_CG15080:2;Name=CG15080-in;Parent=FBtr0086613;parent_type=mRNA" - - - -	6342	14,672,001 – 14,672,103	-	9	109	70.08	-1.27	0.49	0.848669
4624	dm3.chr2R	14,693,273 – 14,693,373	- - - - - - - -	6343	14,693,273 – 14,693,373	-	6	106	75.41	-1.27	0.62	0.687652
4625	dm3.chr2R	14,699,802 – 14,699,909	- - - - - - - -	6344	14,699,802 – 14,699,909	-	6	120	73.34	-0.72	0.69	0.500000
4626	dm3.chr2R	14,708,397 – 14,708,522	- - - intron="intron;ID=intron_FBgn0010551:6_FBgn0010551:7;Name=l(2)03709-in;Parent=FBtr0086614,FBtr0086615,FBtr0086616,FBtr0112861,FBtr0112862,FBtr0112863;parent_type=mRNA" - - - -	6345	14,708,397 – 14,708,522	+	5	125	86.16	-1.55	0.80	0.679016
4627	dm3.chr2R	14,720,567 – 14,720,682	- - - - - - - -	6346	14,720,567 – 14,720,682	+	11	119	63.62	-1.29	0.46	0.970621
4628	dm3.chr2R	14,735,814 – 14,735,934	- - CDS="CDS;ID=CDS_FBgn0034401:2_502;Name=CG15100-cds;Parent=FBtr0086627;parent_type=mRNA" - - - - -	6347	14,735,814 – 14,735,934	-	15	120	78.65	-2.15	0.36	0.649218
4629	dm3.chr2R	14,736,491 – 14,736,664	- - - intron="intron;ID=intron_FBgn0034401:3_FBgn0034401:2;Name=CG15100-in;Parent=FBtr0086627;parent_type=mRNA" - - - -	6348	14,736,491 – 14,736,587	-	12	108	68.14	-0.24	0.55	0.578600
				6349	14,736,563 – 14,736,664	+	12	114	67.93	-0.52	0.55	0.774119
				6350	14,736,563 – 14,736,664	-	12	114	67.93	-0.59	0.51	0.698255
4630	dm3.chr2R	14,745,023 – 14,745,113	- - - intron="intron;ID=intron_FBgn0034405:4_FBgn0034405:3;Name=Jheh2-in;Parent=FBtr0089970,FBtr0300593;parent_type=mRNA" - - - -	6351	14,745,023 – 14,745,113	-	3	90	91.11	-2.38	0.71	0.636956
4631	dm3.chr2R	14,757,409 – 14,757,501	- - - - - - - -	6352	14,757,409 – 14,757,501	+	12	117	78.01	-2.47	0.34	0.560394
4632	dm3.chr2R	14,758,569 – 14,758,681	- - - - - - - -	6353	14,758,569 – 14,758,679	-	11	117	76.88	-2.62	0.47	0.976936
4632	dm3.chr2R	14,758,569 – 14,758,681	- - - - - - - -	6354	14,758,573 – 14,758,681	-	11	115	76.16	-2.40	0.41	0.884806
4633	dm3.chr2R	14,760,488 – 14,760,602	- - - - - - - -	6355	14,760,488 – 14,760,588	-	11	118	73.88	-1.70	0.57	0.946400
				6356	14,760,500 – 14,760,602	+	11	116	80.04	-2.24	0.57	0.944977
				6357	14,760,500 – 14,760,602	-	11	116	80.04	-2.40	0.57	0.968134
4634	dm3.chr2R	14,762,591 – 14,762,645	- - - - - - - -	6358	14,762,591 – 14,762,645	-	5	56	86.64	-0.83	0.97	0.705168
4635	dm3.chr2R	14,768,240 – 14,768,341	- - - intron="intron;ID=intron_FBgn0034408:3_FBgn0034408:4;Name=sano-in;Parent=FBtr0290300;parent_type=mRNA" - - - -	6359	14,768,240 – 14,768,341	+	7	106	81.13	-1.90	0.52	0.612171
4636	dm3.chr2R	14,769,687 – 14,769,765	- - - intron="intron;ID=intron_FBgn0034408:3_FBgn0034408:4;Name=sano-in;Parent=FBtr0290300;parent_type=mRNA" - - - -	6360	14,769,687 – 14,769,765	+	6	92	75.22	-1.19	0.79	0.895389
4637	dm3.chr2R	14,770,253 – 14,770,323	- - - intron="intron;ID=intron_FBgn0034408:3_FBgn0034408:4;Name=sano-in;Parent=FBtr0290300;parent_type=mRNA" - - - -	6361	14,770,253 – 14,770,323	-	7	77	60.83	-1.18	0.43	0.898941
4638	dm3.chr2R	14,770,802 – 14,770,931	- - - intron="intron;ID=intron_FBgn0034408:3_FBgn0034408:4;Name=sano-in;Parent=FBtr0290300;parent_type=mRNA" - - - -	6362	14,770,802 – 14,770,892	-	10	107	85.69	-2.00	0.71	0.812935
				6363	14,770,818 – 14,770,929	+	10	117	78.43	-1.57	0.54	0.620438
				6364	14,770,818 – 14,770,929	-	10	117	78.43	-1.21	0.62	0.566403
				6365	14,770,820 – 14,770,931	+	10	117	78.43	-1.47	0.54	0.511785
				6366	14,770,820 – 14,770,931	-	10	117	78.43	-1.26	0.62	0.601621
4639	dm3.chr2R	14,780,114 – 14,780,206	- - - intron="intron;ID=intron_FBgn0034408:3_FBgn0034408:4;Name=sano-in;Parent=FBtr0290300;parent_type=mRNA" - - - -	6367	14,780,114 – 14,780,206	+	7	99	68.68	-1.59	0.40	0.791855
4640	dm3.chr2R	14,782,300 – 14,782,374	- - - intron="intron;ID=intron_FBgn0034408:3_FBgn0034408:4;Name=sano-in;Parent=FBtr0290300;parent_type=mRNA" - - - -	6368	14,782,300 – 14,782,374	+	6	74	88.38	-2.48	0.85	0.983472
4641	dm3.chr2R	14,805,591 – 14,805,740	- - - intron="intron;ID=intron_FBgn0034408:5_FBgn0034408:8;Name=sano-in;Parent=FBtr0086566,FBtr0086567,FBtr0290300;parent_type=mRNA" - - - -	6369	14,805,591 – 14,805,695	-	10	110	71.31	-2.39	0.52	0.998572
				6370	14,805,619 – 14,805,721	-	13	120	72.78	-2.48	0.42	0.981118
				6371	14,805,639 – 14,805,740	-	12	114	72.98	-1.34	0.43	0.559261
4642	dm3.chr2R	14,811,452 – 14,811,587	- - - intron="intron;ID=intron_FBgn0034408:5_FBgn0034408:8;Name=sano-in;Parent=FBtr0086566,FBtr0086567,FBtr0290300;parent_type=mRNA" - - - -	6372	14,811,452 – 14,811,552	+	6	101	84.43	-2.34	0.73	0.964966
4642	dm3.chr2R	14,811,452 – 14,811,587		6373	14,811,478 – 14,811,587	+	7	116	76.51	-1.93	0.44	0.677443
4643	dm3.chr2R	14,827,208 – 14,827,362	- - - intron="intron;ID=intron_FBgn0034408:5_FBgn0034408:8;Name=sano-in;Parent=FBtr0086566,FBtr0086567,FBtr0290300;parent_type=mRNA" - - - -	6374	14,827,208 – 14,827,302	+	6	113	73.67	-3.25	0.39	0.985265
				6375	14,827,208 – 14,827,302	-	6	113	73.67	-2.48	0.34	0.625109
				6376	14,827,239 – 14,827,330	+	4	113	79.49	-3.76	0.65	0.998502
				6377	14,827,269 – 14,827,362	+	4	112	81.16	-1.92	0.63	0.577536
4644	dm3.chr2R	14,832,413 – 14,832,569	- - - intron="intron;ID=intron_FBgn0034408:5_FBgn0034408:8;Name=sano-in;Parent=FBtr0086566,FBtr0086567,FBtr0290300;parent_type=mRNA" - - - -	6378	14,832,413 – 14,832,569	-	4	171	81.91	-2.89	0.74	0.990736
4645	dm3.chr2R	14,842,091 – 14,842,205	- - - intron="intron;ID=intron_FBgn0034408:6_FBgn0034408:8;Name=sano-in;Parent=FBtr0086568;parent_type=mRNA" - - - -	6379	14,842,091 – 14,842,205	+	4	128	84.76	-1.85	0.82	0.901145
4646	dm3.chr2R	14,848,716 – 14,848,806	- - - - - - - -	6380	14,848,716 – 14,848,806	+	5	98	72.12	-1.71	0.63	0.960833
4647	dm3.chr2R	14,850,874 – 14,850,984	- - - - - - - -	6381	14,850,874 – 14,850,984	+	3	119	72.68	-1.29	0.78	0.831035
4648	dm3.chr2R	14,852,276 – 14,852,327	- - - - - - - -	6382	14,852,276 – 14,852,327	+	5	51	96.47	-1.56	0.92	0.718012
4648	dm3.chr2R	14,852,276 – 14,852,327	- - - - - - - -	6383	14,852,276 – 14,852,327	-	5	51	96.47	-2.43	0.81	0.827722
4649	dm3.chr2R	14,855,102 – 14,855,254	- - - - - - - -	6384	14,855,102 – 14,855,254	-	6	170	65.63	-1.07	0.45	0.591536
4650	dm3.chr2R	14,858,702 – 14,858,767	- - - - - - - -	6385	14,858,702 – 14,858,767	+	5	65	81.99	-3.06	0.72	0.996510
4651	dm3.chr2R	14,860,977 – 14,861,072	- - CDS="CDS;ID=CDS_FBgn0034410:1_509;Name=Topors-cds;Parent=FBtr0086570;parent_type=mRNA" - - - - -	6386	14,860,977 – 14,861,072	+	5	98	91.37	-1.61	0.84	0.609604
4652	dm3.chr2R	14,862,386 – 14,862,496	- - CDS="CDS;ID=CDS_FBgn0034410:3_509;Name=Topors-cds;Parent=FBtr0086570;parent_type=mRNA" - - - - -	6387	14,862,386 – 14,862,496	+	11	119	69.87	-2.12	0.32	0.806192
4653	dm3.chr2R	14,871,316 – 14,871,438	- - - - - - - -	6388	14,871,316 – 14,871,414	+	6	103	79.57	-1.71	0.62	0.785887
4653	dm3.chr2R	14,871,316 – 14,871,438	- - - - - - - -	6389	14,871,329 – 14,871,438	+	6	112	74.11	-1.02	0.61	0.662572
4654	dm3.chr2R	14,872,604 – 14,872,713	- - - - - - - -	6390	14,872,604 – 14,872,713	-	5	114	78.98	-1.76	0.59	0.705567
4655	dm3.chr2R	14,877,492 – 14,877,624	- - - intron="intron;ID=intron_FBgn0034412:2_FBgn0034412:4;Name=abba-in;Parent=FBtr0086572,FBtr0114622;parent_type=mRNA" - - - -	6391	14,877,492 – 14,877,598	+	6	109	80.25	-1.47	0.72	0.782010
				6392	14,877,492 – 14,877,598	-	6	109	80.25	-2.03	0.69	0.945844
				6393	14,877,532 – 14,877,624	+	6	96	80.79	-1.17	0.76	0.580651
4656	dm3.chr2R	14,889,187 – 14,889,246	- - CDS="CDS;ID=CDS_FBgn0034412:9_520;Name=abba-cds;Parent=FBtr0086573;parent_type=mRNA" - - - - -	6394	14,889,187 – 14,889,246	-	3	59	69.59	-1.98	0.48	0.668255
4657	dm3.chr2R	14,894,578 – 14,894,675	- - - intron="intron;ID=intron_FBgn0034412:12_FBgn0034412:13;Name=abba-in;Parent=FBtr0086573,FBtr0086572,FBtr0114622;parent_type=mRNA" - - - -	6395	14,894,578 – 14,894,675	+	11	106	71.73	-1.62	0.53	0.973473
4658	dm3.chr2R	14,896,801 – 14,896,896	- - - - - - - -	6396	14,896,801 – 14,896,896	-	8	107	56.45	-1.56	0.31	0.910344
4659	dm3.chr2R	14,900,106 – 14,900,201	- - - - - - - -	6397	14,900,106 – 14,900,201	-	11	106	72.91	-1.80	0.46	0.901027
4660	dm3.chr2R	14,903,413 – 14,903,482	- - - - - - - -	6398	14,903,413 – 14,903,482	+	7	77	74.91	-2.35	0.41	0.889975
4661	dm3.chr2R	14,903,870 – 14,903,932	- - - - - - - -	6399	14,903,870 – 14,903,932	+	4	62	77.15	-2.36	0.76	0.990625
4661	dm3.chr2R	14,903,870 – 14,903,932	- - - - - - - -	6400	14,903,870 – 14,903,932	-	4	62	77.15	-3.28	0.85	0.998858
4662	dm3.chr2R	14,912,637 – 14,912,731	- - - intron="intron;ID=intron_FBgn0004572:4_FBgn0004572:3;Name=5-HT1B-in;Parent=FBtr0086599;parent_type=mRNA" - - - -	6401	14,912,637 – 14,912,731	+	4	114	67.09	-1.03	0.77	0.914094
4663	dm3.chr2R	14,916,310 – 14,916,405	- - CDS="CDS;ID=CDS_FBgn0004572:8_649;Name=5-HT1B-cds;Parent=FBtr0300482,FBtr0086599;parent_type=mRNA" - - - - -	6402	14,916,310 – 14,916,405	+	10	119	83.14	-1.50	0.81	0.829476
4664	dm3.chr2R	14,929,926 – 14,930,026	- - - - - - - -	6403	14,929,926 – 14,930,026	-	7	107	74.45	-1.15	0.61	0.787111
4665	dm3.chr2R	14,932,891 – 14,932,983	- - - - - - - -	6404	14,932,891 – 14,932,983	+	6	93	81.66	-1.43	0.74	0.776441
4666	dm3.chr2R	14,939,643 – 14,939,734	- - - - - - - -	6405	14,939,643 – 14,939,734	+	5	91	96.48	-1.46	0.90	0.537500
4667	dm3.chr2R	14,947,485 – 14,947,608	- - CDS="CDS;ID=CDS_FBgn0034416:5_498;Name=CG15109-cds;Parent=FBtr0100137;parent_type=mRNA" - - - - -	6406	14,947,485 – 14,947,585	+	7	119	59.98	-0.99	0.42	0.808831
				6407	14,947,485 – 14,947,585	-	7	119	59.98	-0.72	0.47	0.802415
				6408	14,947,511 – 14,947,608	+	7	120	62.65	-1.00	0.42	0.622805
				6409	14,947,511 – 14,947,608	-	7	120	62.65	-0.87	0.47	0.734679
4668	dm3.chr2R	14,947,998 – 14,948,091	- - CDS="CDS;ID=CDS_FBgn0034416:5_498;Name=CG15109-cds;Parent=FBtr0100137;parent_type=mRNA" - - - - -	6410	14,947,998 – 14,948,091	+	12	114	54.63	-1.12	0.35	0.877207
4669	dm3.chr2R	14,949,059 – 14,949,165	- - - - - - - -	6411	14,949,059 – 14,949,165	+	6	112	81.96	-1.78	0.67	0.816420
4669	dm3.chr2R	14,949,059 – 14,949,165	- - - - - - - -	6412	14,949,059 – 14,949,165	-	6	112	81.96	-1.44	0.66	0.516618
4670	dm3.chr2R	14,954,441 – 14,954,538	- - - - - - - -	6413	14,954,441 – 14,954,538	+	4	97	68.92	-1.96	0.40	0.701430
4671	dm3.chr2R	14,960,060 – 14,960,164	- - - intron="intron;ID=intron_CG16720:11_CG16720:12;Name=5-HT1A-in;Parent=FBtr0086577;parent_type=mRNA" - - - -	6414	14,960,060 – 14,960,164	-	7	106	70.77	-1.32	0.46	0.666069
4672	dm3.chr2R	14,960,797 – 14,960,913	- - - intron="intron;ID=intron_CG16720:11_CG16720:12;Name=5-HT1A-in;Parent=FBtr0086577;parent_type=mRNA" - - - -	6415	14,960,797 – 14,960,894	-	12	114	66.42	-1.85	0.74	0.998521
4672	dm3.chr2R	14,960,797 – 14,960,913		6416	14,960,818 – 14,960,913	-	12	109	68.51	-2.35	0.68	0.999656
4673	dm3.chr2R	14,961,271 – 14,961,321	- - - intron="intron;ID=intron_CG16720:11_CG16720:12;Name=5-HT1A-in;Parent=FBtr0086577;parent_type=mRNA" - - - -	6417	14,961,271 – 14,961,321	-	5	50	96.00	-2.56	0.92	0.978637
4674	dm3.chr2R	14,966,588 – 14,966,653	- - - intron="intron;ID=intron_CG16720:11_CG16720:12;Name=5-HT1A-in;Parent=FBtr0086577;parent_type=mRNA" - - - -	6418	14,966,588 – 14,966,653	+	11	66	69.33	-1.59	0.31	0.611832
4675	dm3.chr2R	14,966,906 – 14,966,997	- - - intron="intron;ID=intron_CG16720:11_CG16720:12;Name=5-HT1A-in;Parent=FBtr0086577;parent_type=mRNA" - - - -	6419	14,966,906 – 14,966,997	-	9	93	66.28	-1.21	0.38	0.628995
4676	dm3.chr2R	14,974,692 – 14,974,813	- - - intron="intron;ID=intron_CG16720:11_CG16720:12;Name=5-HT1A-in;Parent=FBtr0086577;parent_type=mRNA" - - - -	6420	14,974,692 – 14,974,784	+	8	120	71.37	-2.06	0.44	0.890315
				6421	14,974,692 – 14,974,784	-	8	120	71.37	-1.76	0.46	0.787800
				6422	14,974,709 – 14,974,813	-	8	120	73.33	-2.61	0.43	0.980528
4677	dm3.chr2R	14,975,812 – 14,975,881	- - - intron="intron;ID=intron_CG16720:11_CG16720:12;Name=5-HT1A-in;Parent=FBtr0086577;parent_type=mRNA" - - - -	6423	14,975,812 – 14,975,881	+	5	69	92.92	-0.85	0.99	0.665056
4678	dm3.chr2R	14,980,605 – 14,980,676	- - - intron="intron;ID=intron_CG16720:2_CG16720:3;Name=5-HT1A-in;Parent=FBtr0086578,FBtr0086577;parent_type=mRNA" - - - -	6424	14,980,605 – 14,980,676	-	7	72	57.17	-1.69	0.40	0.993524
4679	dm3.chr2R	14,984,752 – 14,984,823	- - - intron="intron;ID=intron_CG16720:4_CG16720:5;Name=5-HT1A-in;Parent=FBtr0086578,FBtr0086577;parent_type=mRNA" - - - -	6425	14,984,752 – 14,984,823	-	7	76	75.36	-0.99	0.64	0.645407
4680	dm3.chr2R	14,995,095 – 14,995,212	- - - intron="intron;ID=intron_CG16720:4_CG16720:5;Name=5-HT1A-in;Parent=FBtr0086578,FBtr0086577;parent_type=mRNA" - - - -	6426	14,995,095 – 14,995,212	+	4	117	63.96	-0.77	0.55	0.657072
4680	dm3.chr2R	14,995,095 – 14,995,212		6427	14,995,095 – 14,995,212	-	4	117	63.96	-1.26	0.46	0.734601
4681	dm3.chr2R	15,002,043 – 15,002,137	- - - intron="intron;ID=intron_CG16720:7_CG16720:8;Name=5-HT1A-in;Parent=FBtr0086578,FBtr0086577;parent_type=mRNA" - - - -	6428	15,002,043 – 15,002,137	+	5	97	92.75	-1.44	0.96	0.875557
4681	dm3.chr2R	15,002,043 – 15,002,137		6429	15,002,043 – 15,002,137	-	5	97	92.75	-0.82	0.97	0.540671
4682	dm3.chr2R	15,016,695 – 15,016,787	- - - - - - - -	6430	15,016,695 – 15,016,787	+	6	114	72.51	-1.70	0.45	0.542566
4683	dm3.chr2R	15,017,431 – 15,017,488	- - - intron="intron;ID=intron_CG15110:1_CG15110:2;Name=botv-in;Parent=FBtr0086579;parent_type=mRNA" - - - -	6431	15,017,431 – 15,017,488	-	6	58	70.01	-0.94	0.61	0.878078
4684	dm3.chr2R	15,022,024 – 15,022,185	- - CDS="CDS;ID=CDS_FBgn0034418:2_575;Name=CG15118-cds;Parent=FBtr0113096;parent_type=mRNA" intron="intron;ID=intron_FBgn0034418:3_FBgn0034418:1;Name=CG15118-in;Parent=FBtr0086589,FBtr0086590,FBtr0086591,FBtr0086592;parent_type=mRNA" - - - -	6432	15,022,024 – 15,022,115	-	11	98	75.33	-1.38	0.58	0.907383
4684	dm3.chr2R	15,022,024 – 15,022,185		6433	15,022,078 – 15,022,185	+	9	113	68.63	-1.97	0.38	0.965760
4685	dm3.chr2R	15,039,168 – 15,039,274	- - - intron="intron;ID=intron_FBgn0000578:5_FBgn0000578:6;Name=ena-in;Parent=FBtr0086583,FBtr0100174,FBtr0100176;parent_type=mRNA" - - - -	6434	15,039,168 – 15,039,274	-	5	106	88.79	-1.84	0.73	0.523253
4686	dm3.chr2R	15,044,595 – 15,044,691	- - - intron="intron;ID=intron_FBgn0000578:8_FBgn0000578:9;Name=ena-in;Parent=FBtr0114623;parent_type=mRNA" - - - -	6435	15,044,595 – 15,044,691	-	3	96	89.58	-1.80	0.88	0.849780
4687	dm3.chr2R	15,049,336 – 15,049,393	- - - - - - - -	6436	15,049,336 – 15,049,393	+	6	59	88.90	-2.21	0.66	0.644457
4687	dm3.chr2R	15,049,336 – 15,049,393	- - - - - - - -	6437	15,049,336 – 15,049,393	-	6	59	88.90	-2.35	0.69	0.825915
4688	dm3.chr2R	15,052,352 – 15,052,417	- - - intron="intron;ID=intron_FBgn0034420:1_FBgn0034420:2;Name=CG10737-in;Parent=FBtr0086586,FBtr0100282,FBtr0290313,FBtr0290314,FBtr0290315;parent_type=mRNA" - - - -	6438	15,052,352 – 15,052,417	+	5	70	95.82	-1.28	0.99	0.846262
4689	dm3.chr2R	15,054,462 – 15,054,571	- - - intron="intron;ID=intron_FBgn0034420:2_FBgn0034420:4;Name=CG10737-in;Parent=FBtr0086586,FBtr0290313;parent_type=mRNA" - - - -	6439	15,054,462 – 15,054,571	+	7	119	69.19	-2.12	0.33	0.776917
4690	dm3.chr2R	15,054,898 – 15,054,993	- - - intron="intron;ID=intron_FBgn0034420:2_FBgn0034420:4;Name=CG10737-in;Parent=FBtr0086586,FBtr0290313;parent_type=mRNA" - - - -	6440	15,054,898 – 15,054,993	+	6	105	71.42	-0.93	0.63	0.770003
4691	dm3.chr2R	15,059,017 – 15,059,120	- - - intron="intron;ID=intron_FBgn0034420:6_FBgn0034420:7;Name=CG10737-in;Parent=FBtr0086585,FBtr0086588,FBtr0086586,FBtr0100282,FBtr0290311,FBtr0290312,FBtr0290313,FBtr0290314,FBtr0290315,FBtr0290316,FBtr0290317,FBtr0290318;parent_type=mRNA" - - - -	6441	15,059,017 – 15,059,120	-	8	104	67.35	-1.25	0.35	0.578831
4692	dm3.chr2R	15,061,642 – 15,061,737	- - - intron="intron;ID=intron_FBgn0034420:12_FBgn0034420:13;Name=CG10737-in;Parent=FBtr0086585,FBtr0086588,FBtr0086586,FBtr0100282,FBtr0290311,FBtr0290312,FBtr0290313,FBtr0290314,FBtr0290315,FBtr0290316,FBtr0290317,FBtr0290318;parent_type=mRNA" - - - -	6442	15,061,642 – 15,061,737	+	5	111	66.96	-3.11	0.37	0.995130
4693	dm3.chr2R	15,066,501 – 15,066,595	- - - intron="intron;ID=intron_CG7097:1_CG7097:2;Name=hppy-in;Parent=FBtr0086503,FBtr0086504;parent_type=mRNA" - - - -	6443	15,066,501 – 15,066,595	+	6	96	79.92	-2.23	0.52	0.858750
4694	dm3.chr2R	15,073,639 – 15,073,691	- - - intron="intron;ID=intron_CG7097:2_CG7097:3;Name=hppy-in;Parent=FBtr0086503,FBtr0086504;parent_type=mRNA" - - - -	6444	15,073,639 – 15,073,691	+	5	53	81.49	-2.03	0.81	0.968348
4695	dm3.chr2R	15,074,710 – 15,074,769	- - - intron="intron;ID=intron_CG7097:2_CG7097:3;Name=hppy-in;Parent=FBtr0086503,FBtr0086504;parent_type=mRNA" - - - -	6445	15,074,710 – 15,074,769	-	5	59	95.93	-2.27	0.94	0.969055
4696	dm3.chr2R	15,074,996 – 15,075,090	- - - intron="intron;ID=intron_CG7097:2_CG7097:3;Name=hppy-in;Parent=FBtr0086503,FBtr0086504;parent_type=mRNA" - - - -	6446	15,074,996 – 15,075,090	-	6	102	76.56	-1.52	0.52	0.500000
4697	dm3.chr2R	15,079,504 – 15,079,599	- - - intron="intron;ID=intron_CG7097:2_CG7097:3;Name=hppy-in;Parent=FBtr0086503,FBtr0086504;parent_type=mRNA" - - - -	6447	15,079,504 – 15,079,599	-	5	99	93.57	-1.91	0.82	0.647835
4698	dm3.chr2R	15,088,033 – 15,088,135	- - - intron="intron;ID=intron_CG7097:2_CG7097:3;Name=hppy-in;Parent=FBtr0086503,FBtr0086504;parent_type=mRNA" - - - -	6448	15,088,033 – 15,088,135	-	5	104	86.44	-3.16	0.67	0.984587
4699	dm3.chr2R	15,088,980 – 15,089,075	- - - intron="intron;ID=intron_CG7097:2_CG7097:3;Name=hppy-in;Parent=FBtr0086503,FBtr0086504;parent_type=mRNA" - - - -	6449	15,088,980 – 15,089,075	-	6	98	84.01	-1.72	0.74	0.783200
4700	dm3.chr2R	15,100,710 – 15,100,832	- - - intron="intron;ID=intron_CG7097:3_CG7097:4;Name=hppy-in;Parent=FBtr0086503,FBtr0086504;parent_type=mRNA" - - - -	6450	15,100,710 – 15,100,832	+	6	123	70.08	-0.79	0.52	0.584556
4700	dm3.chr2R	15,100,710 – 15,100,832		6451	15,100,710 – 15,100,832	-	6	123	70.08	-1.01	0.47	0.576309
4701	dm3.chr2R	15,103,509 – 15,103,601	- - - intron="intron;ID=intron_CG7097:3_CG7097:4;Name=hppy-in;Parent=FBtr0086503,FBtr0086504;parent_type=mRNA" - - - -	6452	15,103,509 – 15,103,601	-	6	113	84.80	-1.61	0.73	0.549788
4702	dm3.chr2R	15,111,109 – 15,111,199	- - CDS="CDS;ID=CDS_CG7097:17_634;Name=hppy-cds;Parent=FBtr0086504;parent_type=mRNA" - - - - -	6453	15,111,109 – 15,111,199	+	5	90	97.44	-1.29	0.94	0.586654
4702	dm3.chr2R	15,111,109 – 15,111,199		6454	15,111,109 – 15,111,199	-	5	90	97.44	-2.02	0.94	0.930138
4703	dm3.chr2R	15,116,423 – 15,116,488	- - - - - - - -	6455	15,116,423 – 15,116,488	-	6	69	75.05	-0.97	0.63	0.581648
4704	dm3.chr2R	15,119,875 – 15,119,971	- - - intron="intron;ID=intron_FBgn0010434:2_FBgn0010434:3;Name=cora-in;Parent=FBtr0086508,FBtr0086509,FBtr0086506,FBtr0301279;parent_type=mRNA" - - - -	6456	15,119,875 – 15,119,971	-	8	110	66.07	-1.38	0.40	0.755742
4705	dm3.chr2R	15,120,000 – 15,120,104	- - - intron="intron;ID=intron_FBgn0010434:2_FBgn0010434:3;Name=cora-in;Parent=FBtr0086508,FBtr0086509,FBtr0086506,FBtr0301279;parent_type=mRNA" - - - -	6457	15,120,000 – 15,120,104	+	7	111	75.15	-1.32	0.60	0.668614
4706	dm3.chr2R	15,122,062 – 15,122,188	- - - intron="intron;ID=intron_FBgn0010434:2_FBgn0010434:3;Name=cora-in;Parent=FBtr0086508,FBtr0086509,FBtr0086506,FBtr0301279;parent_type=mRNA" - - - -	6458	15,122,062 – 15,122,157	+	6	104	68.49	-0.93	0.54	0.779714
4706	dm3.chr2R	15,122,062 – 15,122,188		6459	15,122,093 – 15,122,188	-	6	108	67.39	-1.28	0.40	0.551906
4707	dm3.chr2R	15,123,940 – 15,124,042	- - - intron="intron;ID=intron_FBgn0010434:6_FBgn0010434:7;Name=cora-in;Parent=FBtr0086508,FBtr0086509,FBtr0086506,FBtr0301279;parent_type=mRNA" - - - -	6460	15,123,940 – 15,124,042	-	12	111	64.96	-0.56	0.52	0.868227
4708	dm3.chr2R	15,130,717 – 15,130,817	- - CDS="CDS;ID=CDS_FBgn0010434:19_499;Name=cora-cds;Parent=FBtr0086508,FBtr0086506;parent_type=mRNA" - - - - -	6461	15,130,717 – 15,130,817	-	13	103	71.60	-0.72	0.51	0.733000
4709	dm3.chr2R	15,145,928 – 15,146,020	- - - - - - - -	6462	15,145,928 – 15,146,020	-	6	96	87.33	-2.25	0.74	0.914294
4710	dm3.chr2R	15,146,554 – 15,146,622	- - - - - - - -	6463	15,146,554 – 15,146,622	-	5	68	89.48	-1.83	0.81	0.751655
4711	dm3.chr2R	15,153,375 – 15,153,472	- - - - - - - -	6464	15,153,375 – 15,153,472	+	5	99	95.50	-1.09	0.94	0.500000
4711	dm3.chr2R	15,153,375 – 15,153,472	- - - - - - - -	6465	15,153,375 – 15,153,472	-	5	99	95.50	-1.88	0.89	0.820915
4712	dm3.chr2R	15,155,344 – 15,155,434	- - - - - - - -	6466	15,155,344 – 15,155,434	-	7	95	78.79	-1.67	0.53	0.633644
4713	dm3.chr2R	15,156,428 – 15,156,574	- - - - - - - -	6467	15,156,428 – 15,156,520	+	7	97	88.01	-2.68	0.67	0.938693
				6468	15,156,428 – 15,156,520	-	7	97	88.01	-2.98	0.58	0.934542
				6469	15,156,477 – 15,156,574	+	7	99	73.73	-1.20	0.54	0.718371
4714	dm3.chr2R	15,157,852 – 15,157,953	- - - - - - - -	6470	15,157,852 – 15,157,953	-	5	109	70.14	-1.52	0.47	0.697261
4715	dm3.chr2R	15,159,867 – 15,159,972	- - - - - - - -	6471	15,159,867 – 15,159,972	+	6	106	79.14	-2.32	0.65	0.983751
4715	dm3.chr2R	15,159,867 – 15,159,972	- - - - - - - -	6472	15,159,867 – 15,159,972	-	6	106	79.14	-1.91	0.52	0.729881
4716	dm3.chr2R	15,165,432 – 15,165,531	- - - - - - - -	6473	15,165,432 – 15,165,531	+	10	111	77.31	-1.43	0.65	0.813930
4717	dm3.chr2R	15,189,353 – 15,189,447	- - - intron="intron;ID=intron_FBgn0086358:3_FBgn0086358:4;Name=Tab2-in;Parent=FBtr0086516,FBtr0305333;parent_type=mRNA" - - - -	6474	15,189,353 – 15,189,447	+	6	96	75.18	-2.59	0.57	0.994941
4718	dm3.chr2R	15,207,489 – 15,207,573	- - - intron="intron;ID=intron_FBgn0034434:10_FBgn0034434:9;Name=Rgk1-in;Parent=FBtr0301531;parent_type=mRNA" - - - -	6475	15,207,489 – 15,207,573	-	6	90	82.13	-1.98	0.56	0.611661
4719	dm3.chr2R	15,210,819 – 15,210,913	- - - intron="intron;ID=intron_FBgn0034434:10_FBgn0034434:9;Name=Rgk1-in;Parent=FBtr0301531;parent_type=mRNA" - - - -	6476	15,210,819 – 15,210,913	-	8	118	70.29	-2.15	0.36	0.720572
4720	dm3.chr2R	15,220,552 – 15,220,665	- - - intron="intron;ID=intron_FBgn0054045:2_FBgn0054045:3;Name=CG34045-in;Parent=FBtr0302390;parent_type=mRNA" - - - -	6477	15,220,552 – 15,220,663	+	5	111	68.97	-2.41	0.42	0.980458
4720	dm3.chr2R	15,220,552 – 15,220,665		6478	15,220,557 – 15,220,665	+	5	108	70.04	-2.37	0.44	0.978089
4721	dm3.chr2R	15,225,701 – 15,225,769	- - - - - - - -	6479	15,225,701 – 15,225,769	+	10	80	69.18	-1.85	0.44	0.956651
4722	dm3.chr2R	15,229,778 – 15,229,893	- - CDS="CDS;ID=CDS_FBgn0034435:1_623;Name=CG9975-cds;Parent=FBtr0304055;parent_type=mRNA" - - - - -	6480	15,229,778 – 15,229,893	-	12	120	79.17	-1.03	0.68	0.701602
4723	dm3.chr2R	15,261,417 – 15,261,483	- - - - - - - -	6481	15,261,417 – 15,261,483	+	6	67	78.99	-2.05	0.65	0.967020
4723	dm3.chr2R	15,261,417 – 15,261,483	- - - - - - - -	6482	15,261,417 – 15,261,483	-	6	67	78.99	-2.13	0.71	0.984973
4724	dm3.chr2R	15,299,429 – 15,299,555	- - - intron="intron;ID=intron_FBgn0004873:18_FBgn0004873:16;Name=hts-in;Parent=FBtr0086545,FBtr0086547,FBtr0086548,FBtr0301357,FBtr0301358,FBtr0301359,FBtr0301360,FBtr0301361,FBtr0301362,FBtr0303296;parent_type=mRNA" - - - -	6483	15,299,429 – 15,299,521	-	6	98	74.52	-1.79	0.49	0.802603
4724	dm3.chr2R	15,299,429 – 15,299,555		6484	15,299,458 – 15,299,555	-	6	107	78.42	-1.81	0.52	0.590660
4725	dm3.chr2R	15,302,336 – 15,302,425	FBnoncoding="tRNA;ID=FBtr0086527;Name=tRNA:CR30225-RA;Parent=FBgn0050225;Alias=CR30225-RA;Dbxref=FlyBase_Annotation_IDs:CR30225-RA;score_text=Weakly" tRNAscann="Val_chr2R_trna34" - intron="intron;ID=intron_FBgn0004873:18_FBgn0004873:16;Name=hts-in;Parent=FBtr0086545,FBtr0086547,FBtr0086548,FBtr0301357,FBtr0301358,FBtr0301359,FBtr0301360,FBtr0301361,FBtr0301362,FBtr0303296;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;BABH01006915.1/5428-5500\|8.6e-23" - - -	6485	15,302,336 – 15,302,425	+	13	89	91.93	-0.90	0.95	0.631207
4725	dm3.chr2R	15,302,336 – 15,302,425		6486	15,302,336 – 15,302,425	-	13	89	91.93	-0.91	0.96	0.682512
4726	dm3.chr2R	15,312,098 – 15,312,189	- - - - - - - -	6487	15,312,098 – 15,312,189	+	5	91	97.58	-1.40	0.97	0.797403
4727	dm3.chr2R	15,314,687 – 15,314,780	- - CDS="CDS;ID=CDS_FBgn0012051:7_499;Name=CalpA-cds;Parent=FBtr0086530;parent_type=mRNA" - - - - -	6488	15,314,687 – 15,314,780	+	14	109	66.29	-0.90	0.50	0.915964
4728	dm3.chr2R	15,324,723 – 15,324,827	- - - - - - - -	6489	15,324,723 – 15,324,827	+	5	104	92.79	-1.50	0.94	0.848985
4729	dm3.chr2R	15,329,738 – 15,329,876	- - - - - - - -	6490	15,329,738 – 15,329,876	+	6	139	73.88	-2.14	0.58	0.989153
4729	dm3.chr2R	15,329,738 – 15,329,876	- - - - - - - -	6491	15,329,738 – 15,329,876	-	6	139	73.88	-0.97	0.64	0.744914
4730	dm3.chr2R	15,338,159 – 15,338,259	- - - - - - - -	6492	15,338,159 – 15,338,259	-	10	116	75.14	-1.93	0.40	0.604028
4731	dm3.chr2R	15,351,127 – 15,351,200	- - - intron="intron;ID=intron_FBgn0260934:6_FBgn0260934:11;Name=par-1-in;Parent=FBtr0086452,FBtr0086453,FBtr0086454;parent_type=mRNA" - - - -	6493	15,351,127 – 15,351,200	-	4	74	54.11	-2.62	0.32	0.991486
4732	dm3.chr2R	15,354,733 – 15,354,800	- - - - - - - -	6494	15,354,733 – 15,354,800	+	7	72	69.35	-1.47	0.52	0.955889
4733	dm3.chr2R	15,357,747 – 15,357,848	- - CDS="CDS;ID=CDS_FBgn0260934:11_617;Name=par-1-cds;Parent=FBtr0086452,FBtr0086456,FBtr0100391,FBtr0301503,FBtr0301504;parent_type=mRNA" - - - - -	6495	15,357,747 – 15,357,845	+	10	107	66.72	-1.14	0.39	0.583643
4733	dm3.chr2R	15,357,747 – 15,357,848		6496	15,357,750 – 15,357,848	+	11	107	66.29	-1.26	0.39	0.742082
4734	dm3.chr2R	15,363,268 – 15,363,365	- - - intron="intron;ID=intron_FBgn0260934:23_FBgn0260934:25;Name=par-1-in;Parent=FBtr0086459,FBtr0086453,FBtr0086457,FBtr0086458,FBtr0086460;parent_type=mRNA" - - - -	6497	15,363,268 – 15,363,365	+	5	97	92.99	-1.45	0.89	0.640962
4735	dm3.chr2R	15,386,073 – 15,386,124	- - - intron="intron;ID=intron_FBgn0034454:2_FBgn0034454:3;Name=CG15120-in;Parent=FBtr0086463;parent_type=mRNA" - - - -	6498	15,386,073 – 15,386,124	-	5	51	97.65	-2.44	0.95	0.978542
4736	dm3.chr2R	15,393,839 – 15,393,923	FBnoncoding="tRNA;ID=FBtr0086498;Name=tRNA:CR30223-RA;Parent=FBgn0050223;Alias=CR30223-RA;Dbxref=FlyBase_Annotation_IDs:CR30223-RA;score_text=Weakly" tRNAscann="His_chr2R_trna67" - - "Rfam_10.0=RF00005;tRNA;AANI01014800.1/19824-19895\|3.7e-34" - - -	6499	15,393,839 – 15,393,923	+	14	87	92.22	-3.00	0.89	0.995261
4736	dm3.chr2R	15,393,839 – 15,393,923		6500	15,393,839 – 15,393,923	-	14	87	92.22	-1.74	0.97	0.965552
4737	dm3.chr2R	15,423,478 – 15,423,569	- - - intron="intron;ID=intron_FBgn0003435:5_FBgn0003435:4;Name=sm-in;Parent=FBtr0086492,FBtr0086495,FBtr0100232,FBtr0110898,FBtr0301609,FBtr0301610,FBtr0304654,FBtr0304653,FBtr0304655,FBtr0304656;parent_type=mRNA" - - - -	6501	15,423,478 – 15,423,569	+	3	91	92.54	-2.10	0.76	0.519341
4738	dm3.chr2R	15,423,871 – 15,423,981	- - - intron="intron;ID=intron_FBgn0003435:5_FBgn0003435:4;Name=sm-in;Parent=FBtr0086492,FBtr0086495,FBtr0100232,FBtr0110898,FBtr0301609,FBtr0301610,FBtr0304654,FBtr0304653,FBtr0304655,FBtr0304656;parent_type=mRNA" - - - -	6502	15,423,871 – 15,423,981	+	4	119	68.88	-2.22	0.62	0.991209
4738	dm3.chr2R	15,423,871 – 15,423,981		6503	15,423,871 – 15,423,981	-	4	119	68.88	-1.76	0.58	0.939428
4739	dm3.chr2R	15,429,881 – 15,429,974	- - - intron="intron;ID=intron_FBgn0003435:9_FBgn0003435:7;Name=sm-in;Parent=FBtr0304653;parent_type=mRNA" - - - -	6504	15,429,881 – 15,429,974	-	5	96	96.82	-1.34	0.98	0.823202
4740	dm3.chr2R	15,433,046 – 15,433,140	- - - intron="intron;ID=intron_FBgn0003435:9_FBgn0003435:7;Name=sm-in;Parent=FBtr0304653;parent_type=mRNA" - - - -	6505	15,433,046 – 15,433,140	+	6	118	80.33	-1.98	0.58	0.651253
4741	dm3.chr2R	15,434,674 – 15,434,733	- - - - - - - -	6506	15,434,674 – 15,434,733	+	6	60	62.34	-1.08	0.48	0.933968
4742	dm3.chr2R	15,442,165 – 15,442,231	- - - - - - - -	6507	15,442,165 – 15,442,231	+	5	68	92.51	-1.02	0.99	0.779419
4743	dm3.chr2R	15,445,719 – 15,445,812	- - - - - - - -	6508	15,445,719 – 15,445,812	-	5	116	73.46	-1.51	0.56	0.590098
4744	dm3.chr2R	15,446,440 – 15,446,572	- - - - - - - -	6509	15,446,440 – 15,446,541	-	7	115	81.00	-2.14	0.47	0.544489
				6510	15,446,475 – 15,446,572	+	7	108	79.19	-2.95	0.59	0.993391
				6511	15,446,475 – 15,446,572	-	7	108	79.19	-2.32	0.66	0.977343
4745	dm3.chr2R	15,453,360 – 15,453,420	- - - intron="intron;ID=intron_FBgn0003435:11_FBgn0003435:10;Name=sm-in;Parent=FBtr0110898;parent_type=mRNA" - - - -	6512	15,453,360 – 15,453,420	+	5	61	94.04	-2.26	0.95	0.979343
4746	dm3.chr2R	15,459,198 – 15,459,292	- - - - - - - -	6513	15,459,198 – 15,459,292	+	9	94	84.24	-2.02	0.52	0.511084
4747	dm3.chr2R	15,461,201 – 15,461,293	- - - - - - - -	6514	15,461,201 – 15,461,293	-	4	93	93.51	-1.26	0.92	0.586906
4748	dm3.chr2R	15,463,003 – 15,463,060	- - - intron="intron;ID=intron_FBgn0003435:15_FBgn0003435:14;Name=sm-in;Parent=FBtr0086492,FBtr0100232,FBtr0301609,FBtr0304654,FBtr0304655,FBtr0304656;parent_type=mRNA" - - - -	6515	15,463,003 – 15,463,060	-	5	57	97.89	-0.98	1.00	0.683442
4749	dm3.chr2R	15,465,239 – 15,465,333	- - - intron="intron;ID=intron_FBgn0003435:15_FBgn0003435:14;Name=sm-in;Parent=FBtr0086492,FBtr0100232,FBtr0301609,FBtr0304654,FBtr0304655,FBtr0304656;parent_type=mRNA" - - - -	6516	15,465,239 – 15,465,333	+	8	110	64.46	-0.67	0.56	0.859810
4750	dm3.chr2R	15,466,387 – 15,466,481	- - - intron="intron;ID=intron_FBgn0003435:15_FBgn0003435:14;Name=sm-in;Parent=FBtr0086492,FBtr0100232,FBtr0301609,FBtr0304654,FBtr0304655,FBtr0304656;parent_type=mRNA" - - - -	6517	15,466,387 – 15,466,481	-	7	107	64.16	-1.33	0.40	0.658204
4751	dm3.chr2R	15,473,940 – 15,474,035	- - - intron="intron;ID=intron_FBgn0003435:15_FBgn0003435:14;Name=sm-in;Parent=FBtr0086492,FBtr0100232,FBtr0301609,FBtr0304654,FBtr0304655,FBtr0304656;parent_type=mRNA" - - - -	6518	15,473,940 – 15,474,035	+	8	98	60.10	-1.07	0.41	0.920383
4752	dm3.chr2R	15,485,233 – 15,485,299	- - - - - - - -	6519	15,485,233 – 15,485,299	+	5	66	97.58	-1.10	0.96	0.550069
4752	dm3.chr2R	15,485,233 – 15,485,299	- - - - - - - -	6520	15,485,233 – 15,485,299	-	5	66	97.58	-0.90	0.98	0.510854
4753	dm3.chr2R	15,487,061 – 15,487,155	- - - - - - - -	6521	15,487,061 – 15,487,155	+	11	105	87.69	-2.26	0.76	0.937165
4754	dm3.chr2R	15,492,830 – 15,492,930	- - - intron="intron;ID=intron_FBgn0003435:16_FBgn0003435:15;Name=sm-in;Parent=FBtr0086492,FBtr0100232,FBtr0301609,FBtr0304654,FBtr0304655,FBtr0304656;parent_type=mRNA" - - - -	6522	15,492,830 – 15,492,930	+	7	115	75.95	-2.09	0.39	0.601826
4755	dm3.chr2R	15,504,077 – 15,504,228	- - - intron="intron;ID=intron_FBgn0003435:16_FBgn0003435:15;Name=sm-in;Parent=FBtr0086492,FBtr0100232,FBtr0301609,FBtr0304654,FBtr0304655,FBtr0304656;parent_type=mRNA" - - - -	6523	15,504,077 – 15,504,188	+	5	120	68.65	-1.19	0.58	0.742616
4755	dm3.chr2R	15,504,077 – 15,504,228		6524	15,504,110 – 15,504,228	+	5	120	72.14	-1.61	0.47	0.563192
4756	dm3.chr2R	15,507,105 – 15,507,214	- - - intron="intron;ID=intron_FBgn0003435:16_FBgn0003435:15;Name=sm-in;Parent=FBtr0086492,FBtr0100232,FBtr0301609,FBtr0304654,FBtr0304655,FBtr0304656;parent_type=mRNA" - - - -	6525	15,507,105 – 15,507,199	+	7	114	70.04	-1.54	0.51	0.874952
				6526	15,507,105 – 15,507,199	-	7	114	70.04	-1.36	0.50	0.746727
				6527	15,507,119 – 15,507,214	+	6	98	83.75	-2.24	0.70	0.937916
4757	dm3.chr2R	15,514,284 – 15,514,377	- - - intron="intron;ID=intron_FBgn0003435:16_FBgn0003435:15;Name=sm-in;Parent=FBtr0086492,FBtr0100232,FBtr0301609,FBtr0304654,FBtr0304655,FBtr0304656;parent_type=mRNA" - - - -	6528	15,514,284 – 15,514,377	+	6	95	82.85	-1.85	0.67	0.809792
4758	dm3.chr2R	15,519,331 – 15,519,561	- - - - - - - -	6529	15,519,331 – 15,519,441	+	3	119	87.68	-2.38	0.81	0.939254
				6530	15,519,401 – 15,519,521	-	5	120	93.83	-1.25	0.94	0.689773
				6531	15,519,441 – 15,519,561	+	5	120	62.25	-1.73	0.33	0.551407
4759	dm3.chr2R	15,533,129 – 15,533,223	- - - - - - - -	6532	15,533,129 – 15,533,223	+	11	105	74.59	-2.28	0.40	0.894505
4759	dm3.chr2R	15,533,129 – 15,533,223	- - - - - - - -	6533	15,533,129 – 15,533,223	-	11	105	74.59	-2.34	0.38	0.876941
4760	dm3.chr2R	15,547,554 – 15,547,715	- - - - - - - -	6534	15,547,554 – 15,547,653	-	8	113	66.04	-1.49	0.35	0.592915
				6535	15,547,588 – 15,547,682	+	6	113	79.34	-3.06	0.55	0.989794
				6536	15,547,588 – 15,547,682	-	6	113	79.34	-1.70	0.64	0.732498
				6537	15,547,617 – 15,547,715	+	5	98	98.37	-1.53	0.91	0.570740
4761	dm3.chr2R	15,548,204 – 15,548,298	FBnoncoding="pre_miRNA;ID=FBtr0304357;Name=mir-6-3-RM;Parent=FBgn0262418;Alias=CR42966-RM;Dbxref=FlyBase_Annotation_IDs:CR42966-RM,miRBase:MI0000126" - - - "Rfam_10.0=RF00143;mir-6;AAEU02000463.1/591454-591532\|1.6e-30" - - "mirBase_v16=dme-mir-6-3\|2.1e-39"	6538	15,548,204 – 15,548,298	-	12	96	82.79	-3.40	0.73	0.999058
4762	dm3.chr2R	15,548,488 – 15,548,591	FBnoncoding="pre_miRNA;ID=FBtr0304530;Name=mir-6-1-RM;Parent=FBgn0262464;Alias=CR43047-RM;Dbxref=FlyBase_Annotation_IDs:CR43047-RM,miRBase:MI0000124" - - - "Rfam_10.0=RF00143;mir-6;AAST01030396.1/2399-2475\|2.9e-32" - - "mirBase_v16=dme-mir-6-1\|9.7e-42"	6539	15,548,488 – 15,548,591	-	13	119	71.64	-2.96	0.74	0.999751
4763	dm3.chr2R	15,548,643 – 15,548,735	FBnoncoding="pre_miRNA;ID=FBtr0304329;Name=mir-5-RM;Parent=FBgn0262408;Alias=CR42952-RM;Dbxref=FlyBase_Annotation_IDs:CR42952-RM,miRBase:MI0000123" - - - "Rfam_10.0=RF00854;mir-5;AASS01023484.1/3619-3686\|8.9e-23" - - "mirBase_v16=dme-mir-5\|4.9e-34"	6540	15,548,643 – 15,548,735	+	13	117	75.61	-3.28	0.78	0.999484
4763	dm3.chr2R	15,548,643 – 15,548,735		6541	15,548,643 – 15,548,735	-	13	117	75.61	-3.72	0.69	0.999758
4764	dm3.chr2R	15,548,794 – 15,548,885	FBnoncoding="pre_miRNA;ID=FBtr0304347;Name=mir-4-RM;Parent=FBgn0262414;Alias=CR42961-RM;Dbxref=FlyBase_Annotation_IDs:CR42961-RM,miRBase:MI0000122" - - - - - - "mirBase_v16=dme-mir-4\|1.3e-40"	6542	15,548,794 – 15,548,885	+	13	108	85.23	-4.12	0.85	0.999328
4764	dm3.chr2R	15,548,794 – 15,548,885		6543	15,548,794 – 15,548,885	-	13	108	85.23	-1.85	0.74	0.878324
4765	dm3.chr2R	15,548,913 – 15,549,031	FBnoncoding="pre_miRNA;ID=FBtr0304444;Name=mir-286-RM;Parent=FBgn0262443;Alias=CR43006-RM;Dbxref=FlyBase_Annotation_IDs:CR43006-RM,miRBase:MI0000380" - - - "Rfam_10.0=RF00789;mir-286;AAPQ01007044.1/1205207-1205305\|3.8e-41" - - "mirBase_v16=dme-mir-286\|2.1e-52"	6544	15,548,913 – 15,549,007	-	13	116	71.98	-1.04	0.68	0.948225
				6545	15,548,934 – 15,549,031	+	12	117	75.90	-1.78	0.54	0.933868
				6546	15,548,934 – 15,549,031	-	12	117	75.90	-2.29	0.77	0.997460
4766	dm3.chr2R	15,553,648 – 15,553,714	- - CDS="CDS;ID=CDS_FBgn0015949:4_509;Name=hrg-cds;Parent=FBtr0086483,FBtr0086484;parent_type=mRNA" - - - - -	6547	15,553,648 – 15,553,714	+	12	66	78.58	-1.07	0.71	0.818976
4767	dm3.chr2R	15,561,804 – 15,561,865	- - - - - - - -	6548	15,561,804 – 15,561,865	+	6	73	82.26	-2.01	0.89	0.980882
4768	dm3.chr2R	15,564,837 – 15,564,931	- - - - - - - -	6549	15,564,837 – 15,564,931	+	4	97	91.16	-2.27	1.02	0.993985
4768	dm3.chr2R	15,564,837 – 15,564,931	- - - - - - - -	6550	15,564,837 – 15,564,931	-	4	97	91.16	-2.10	0.85	0.894741
4769	dm3.chr2R	15,572,257 – 15,572,383	- - - - - - - -	6551	15,572,257 – 15,572,360	+	9	119	89.87	-2.39	0.94	0.990792
4769	dm3.chr2R	15,572,257 – 15,572,383	- - - - - - - -	6552	15,572,283 – 15,572,383	+	11	118	90.02	-1.24	0.93	0.789962
4770	dm3.chr2R	15,585,899 – 15,585,969	- - - - - - - -	6553	15,585,899 – 15,585,969	-	12	78	61.99	-0.67	0.48	0.897230
4771	dm3.chr2R	15,589,454 – 15,589,545	- - - - - - - -	6554	15,589,454 – 15,589,545	+	8	109	75.24	-1.31	0.61	0.789485
4772	dm3.chr2R	15,590,226 – 15,590,323	- - - - - - - -	6555	15,590,226 – 15,590,323	+	11	99	70.98	-2.03	0.37	0.924535
4773	dm3.chr2R	15,594,548 – 15,594,639	- - - - - - - -	6556	15,594,548 – 15,594,639	-	11	105	87.05	-2.33	0.56	0.595977
4774	dm3.chr2R	15,603,250 – 15,603,300	- - - - - - - -	6557	15,603,250 – 15,603,300	+	5	50	93.60	-1.50	0.97	0.901507
4775	dm3.chr2R	15,604,348 – 15,604,399	- - - - - - - -	6558	15,604,348 – 15,604,399	-	3	60	55.00	-2.09	0.60	0.998298
4776	dm3.chr2R	15,614,956 – 15,615,041	FBnoncoding="tRNA;ID=FBtr0086447;Name=tRNA:E4:56Fb-RA;Parent=FBgn0011849;Dbxref=FlyBase_Annotation_IDs:CR30455-RA;score_text=Weakly" tRNAscann="Glu_chr2R_trna63" - - "Rfam_10.0=RF00005;tRNA;AAGE02012517.1/230117-230179\|1.4e-27" - - -	6559	15,614,956 – 15,615,041	+	14	89	74.51	-1.28	0.56	0.954880
4776	dm3.chr2R	15,614,956 – 15,615,041		6560	15,614,956 – 15,615,041	-	14	89	74.51	-1.13	0.73	0.982947
4777	dm3.chr2R	15,618,921 – 15,619,050	FBnoncoding="rRNA;ID=FBtr0086439;Name=5SrRNA:CR33447-RA;Parent=FBgn0053447;Dbxref=FlyBase_Annotation_IDs:CR33447-RA,REFSEQ:NR_001798;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|7.9e-55" - - -	6561	15,618,921 – 15,619,050	+	3	129	79.43	-1.36	0.87	0.830411
4777	dm3.chr2R	15,618,921 – 15,619,050		6562	15,618,921 – 15,619,050	-	3	129	79.43	-3.25	0.94	0.998388
4778	dm3.chr2R	15,624,882 – 15,624,987	FBnoncoding="rRNA;ID=FBtr0086423;Name=5SrRNA:CR33431-RA;Parent=FBgn0053431;Dbxref=FlyBase_Annotation_IDs:CR33431-RA,REFSEQ:NR_001814;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|5.8e-49" - - -	6563	15,624,882 – 15,624,987	-	3	117	57.82	-2.01	0.31	0.567958
4779	dm3.chr2R	15,625,281 – 15,625,350	FBnoncoding="rRNA;ID=FBtr0086422;Name=5SrRNA:CR33430-RA;Parent=FBgn0053430;Dbxref=FlyBase_Annotation_IDs:CR33430-RA,REFSEQ:NR_001815;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|1.7e-32" - - -	6564	15,625,281 – 15,625,350	+	3	69	78.74	-1.38	0.97	0.947391
4779	dm3.chr2R	15,625,281 – 15,625,350		6565	15,625,281 – 15,625,350	-	3	69	78.74	-0.50	0.99	0.629204
4780	dm3.chr2R	15,627,092 – 15,627,211	FBnoncoding="rRNA;ID=FBtr0086417;Name=5SrRNA:CR33425-RA;Parent=FBgn0053425;Dbxref=FlyBase_Annotation_IDs:CR33425-RA,REFSEQ:NR_001820;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|4.6e-56" - - -	6566	15,627,092 – 15,627,211	-	3	133	56.88	-2.54	0.33	0.951179
4781	dm3.chr2R	15,628,176 – 15,628,305	FBnoncoding="rRNA;ID=FBtr0086414;Name=5SrRNA:CR33422-RA;Parent=FBgn0053422;Dbxref=FlyBase_Annotation_IDs:CR33422-RA,REFSEQ:NR_001823;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|7.9e-55" - - -	6567	15,628,176 – 15,628,305	-	3	146	53.92	-2.64	0.23	0.834147
4782	dm3.chr2R	15,632,646 – 15,632,742	FBnoncoding="rRNA;ID=FBtr0086402;Name=5SrRNA:CR33410-RA;Parent=FBgn0053410;Dbxref=FlyBase_Annotation_IDs:CR33410-RA,REFSEQ:NR_001835;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|7.5e-42" - - -	6568	15,632,646 – 15,632,742	+	3	96	72.44	-1.82	0.89	0.981707
4783	dm3.chr2R	15,637,754 – 15,637,892	FBnoncoding="rRNA;ID=FBtr0086388;Name=5SrRNA:CR33396-RA;Parent=FBgn0053396;Dbxref=FlyBase_Annotation_IDs:CR33396-RA,REFSEQ:NR_001849;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|3.5e-57" - - -	6569	15,637,754 – 15,637,892	+	3	138	76.09	-1.09	0.88	0.801404
4783	dm3.chr2R	15,637,754 – 15,637,892		6570	15,637,754 – 15,637,892	-	3	138	76.09	-3.47	0.97	0.998712
4784	dm3.chr2R	15,638,505 – 15,638,630	FBnoncoding="rRNA;ID=FBtr0086386;Name=5SrRNA:CR33394-RA;Parent=FBgn0053394;Dbxref=FlyBase_Annotation_IDs:CR33394-RA,REFSEQ:NR_001851;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|3.1e-57" - - -	6571	15,638,505 – 15,638,630	-	4	128	64.03	-2.74	0.50	0.998655
4785	dm3.chr2R	15,638,920 – 15,638,999	FBnoncoding="rRNA;ID=FBtr0086385;Name=5SrRNA:CR33393-RA;Parent=FBgn0053393;Dbxref=FlyBase_Annotation_IDs:CR33393-RA,REFSEQ:NR_001852;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|3.5e-37" - - -	6572	15,638,920 – 15,638,999	+	3	93	56.23	-1.06	0.52	0.755270
4786	dm3.chr2R	15,640,705 – 15,640,830	FBnoncoding="rRNA;ID=FBtr0086380;Name=5SrRNA:CR33388-RA;Parent=FBgn0053388;Dbxref=FlyBase_Annotation_IDs:CR33388-RA,REFSEQ:NR_001857;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|3.1e-57" - - -	6573	15,640,705 – 15,640,830	+	3	127	78.89	-1.74	0.79	0.876635
4786	dm3.chr2R	15,640,705 – 15,640,830		6574	15,640,705 – 15,640,830	-	3	127	78.89	-3.80	0.92	0.999027
4787	dm3.chr2R	15,641,489 – 15,641,552	FBnoncoding="rRNA;ID=FBtr0086378;Name=5SrRNA:CR33386-RA;Parent=FBgn0053386;Dbxref=FlyBase_Annotation_IDs:CR33386-RA,REFSEQ:NR_001859;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|6.1e-29" - - -	6575	15,641,489 – 15,641,552	+	4	75	53.83	-1.57	0.55	0.995569
4787	dm3.chr2R	15,641,489 – 15,641,552		6576	15,641,489 – 15,641,552	-	4	75	53.83	0.04	0.61	0.575458
4788	dm3.chr2R	15,642,217 – 15,642,306	FBnoncoding="rRNA;ID=FBtr0086376;Name=5SrRNA:CR33384-RA;Parent=FBgn0053384;Dbxref=FlyBase_Annotation_IDs:CR33384-RA,REFSEQ:NR_001861;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|4.4e-43" - - -	6577	15,642,217 – 15,642,306	+	3	91	77.49	-1.74	0.90	0.964530
4789	dm3.chr2R	15,642,586 – 15,642,675	FBnoncoding="rRNA;ID=FBtr0086375;Name=5SrRNA:CR33383-RA;Parent=FBgn0053383;Dbxref=FlyBase_Annotation_IDs:CR33383-RA,REFSEQ:NR_001862;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|4.4e-43" - - -	6578	15,642,586 – 15,642,675	+	3	91	77.49	-1.74	0.90	0.964530
4790	dm3.chr2R	15,642,896 – 15,643,029	FBnoncoding="rRNA;ID=FBtr0086374;Name=5SrRNA:CR33382-RA;Parent=FBgn0053382;Dbxref=FlyBase_Annotation_IDs:CR33382-RA,REFSEQ:NR_001863;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;M25016.1/1-119\|1.9e-49" - - -	6579	15,642,896 – 15,643,029	+	3	135	67.75	-0.93	0.69	0.617243
4790	dm3.chr2R	15,642,896 – 15,643,029		6580	15,642,896 – 15,643,029	-	3	135	67.75	-1.12	0.81	0.905331
4791	dm3.chr2R	15,643,262 – 15,643,397	FBnoncoding="rRNA;ID=FBtr0086373;Name=5SrRNA:CR33381-RA;Parent=FBgn0053381;Dbxref=FlyBase_Annotation_IDs:CR33381-RA,REFSEQ:NR_001864;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AAKO01000734.1/860-976\|7.8e-49" - - -	6581	15,643,262 – 15,643,397	+	3	137	65.04	-1.09	0.65	0.815386
4791	dm3.chr2R	15,643,262 – 15,643,397		6582	15,643,262 – 15,643,397	-	3	137	65.04	-0.67	0.76	0.736917
4792	dm3.chr2R	15,645,924 – 15,645,987	FBnoncoding="rRNA;ID=FBtr0086366;Name=5SrRNA:CR33374-RA;Parent=FBgn0053374;Dbxref=FlyBase_Annotation_IDs:CR33374-RA,REFSEQ:NR_001871;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|6.1e-29" - - -	6583	15,645,924 – 15,645,987	+	3	65	77.20	-1.77	0.97	0.982045
4793	dm3.chr2R	15,648,520 – 15,648,626	FBnoncoding="rRNA;ID=FBtr0086359;Name=5SrRNA:CR33367-RA;Parent=FBgn0053367;Dbxref=FlyBase_Annotation_IDs:CR33367-RA,REFSEQ:NR_001878;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|2.1e-39" - - -	6584	15,648,520 – 15,648,626	+	3	106	67.33	-1.79	0.79	0.979581
4793	dm3.chr2R	15,648,520 – 15,648,626		6585	15,648,520 – 15,648,626	-	3	106	67.33	-0.59	0.82	0.548953
4794	dm3.chr2R	15,650,355 – 15,650,443	FBnoncoding="rRNA;ID=FBtr0086354;Name=5SrRNA:CR33362-RA;Parent=FBgn0053362;Dbxref=FlyBase_Annotation_IDs:CR33362-RA,REFSEQ:NR_001883;score_text=Weakly" - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|1.7e-42" - - -	6586	15,650,355 – 15,650,443	+	3	88	81.06	-1.97	1.01	0.990616
4795	dm3.chr2R	15,652,599 – 15,652,654	- - - - "Rfam_10.0=RF00001;5S_rRNA;AASU01023772.1/129-247\|3.0e-24" - - -	6587	15,652,599 – 15,652,654	+	3	55	75.31	-2.11	0.85	0.983968
4795	dm3.chr2R	15,652,599 – 15,652,654		6588	15,652,599 – 15,652,654	-	3	55	75.31	-1.40	0.79	0.797789
4796	dm3.chr2R	15,659,562 – 15,659,675	- - - - - - - -	6589	15,659,562 – 15,659,653	-	10	116	84.46	-1.25	0.79	0.605633
4796	dm3.chr2R	15,659,562 – 15,659,675	- - - - - - - -	6590	15,659,576 – 15,659,675	-	12	117	81.81	-2.77	0.69	0.994907
4797	dm3.chr2R	15,666,126 – 15,666,236	- - - - - - - -	6591	15,666,126 – 15,666,236	+	3	110	52.73	-2.87	0.17	0.857992
4798	dm3.chr2R	15,672,939 – 15,673,044	- - - - - - - -	6592	15,672,939 – 15,673,044	+	7	119	65.79	-1.70	0.34	0.736530
4798	dm3.chr2R	15,672,939 – 15,673,044	- - - - - - - -	6593	15,672,939 – 15,673,044	-	7	119	65.79	-2.48	0.38	0.991652
4799	dm3.chr2R	15,675,553 – 15,675,663	- - - - - - - -	6594	15,675,553 – 15,675,663	+	12	120	87.41	-1.92	0.65	0.556265
4800	dm3.chr2R	15,676,022 – 15,676,079	- - - - - - - -	6595	15,676,022 – 15,676,079	-	10	64	61.92	-1.46	0.30	0.725564
4801	dm3.chr2R	15,682,336 – 15,682,451	- - - - - - - -	6596	15,682,336 – 15,682,432	-	9	97	72.36	-1.19	0.57	0.914421
4801	dm3.chr2R	15,682,336 – 15,682,451	- - - - - - - -	6597	15,682,355 – 15,682,451	-	9	111	64.04	-0.71	0.48	0.500000
4802	dm3.chr2R	15,682,462 – 15,682,590	- - - - - - - -	6598	15,682,462 – 15,682,590	+	9	140	66.41	-1.49	0.32	0.521261
4803	dm3.chr2R	15,690,095 – 15,690,195	FBnoncoding="tRNA;ID=FBtr0086334;Name=tRNA:K2:56EF-RA;Parent=FBgn0011897;Dbxref=FlyBase_Annotation_IDs:CR30520-RA;score_text=Weakly" tRNAscann="Lys_chr2R_trna40" - - "Rfam_10.0=RF00005;tRNA;AAQQ01374092.1/2184-2259\|1.1e-28" "Noncode_2.0=n206743_u201439_AK077035_mRNAlike\|9.1e-17" "unique_Noncode_2.0=u201439_mRNAlike\|7.9e-17" -	6599	15,690,095 – 15,690,195	+	11	103	88.26	-2.04	0.97	0.988475
4803	dm3.chr2R	15,690,095 – 15,690,195		6600	15,690,095 – 15,690,195	-	11	103	88.26	-2.73	0.95	0.996580
4804	dm3.chr2R	15,692,051 – 15,692,160	- - - - - - - -	6601	15,692,051 – 15,692,160	+	8	112	79.24	-1.13	0.88	0.898497
4805	dm3.chr2R	15,692,244 – 15,692,327	- - - - - - - -	6602	15,692,244 – 15,692,327	-	7	84	74.21	-1.47	0.43	0.518879
4806	dm3.chr2R	15,694,673 – 15,694,788	- - - - - - - -	6603	15,694,673 – 15,694,774	+	11	119	81.80	-2.11	0.68	0.950525
				6604	15,694,673 – 15,694,774	-	11	119	81.80	-0.80	0.87	0.636276
				6605	15,694,698 – 15,694,788	+	10	104	93.41	-1.21	0.94	0.707028
4807	dm3.chr2R	15,696,083 – 15,696,193	- - - - - - - -	6606	15,696,083 – 15,696,193	+	10	122	79.71	-1.65	0.57	0.760321
4808	dm3.chr2R	15,710,095 – 15,710,208	- - - - - - - -	6607	15,710,095 – 15,710,199	+	8	114	76.29	-1.73	0.55	0.900586
				6608	15,710,095 – 15,710,199	-	8	114	76.29	-2.04	0.47	0.890615
				6609	15,710,101 – 15,710,208	+	7	113	82.48	-1.55	0.67	0.688183
4809	dm3.chr2R	15,718,263 – 15,718,364	- - CDS="CDS;ID=CDS_FBgn0034476:1_628;Name=Toll-7-cds;Parent=FBtr0086336;parent_type=mRNA" - - - - -	6610	15,718,263 – 15,718,364	+	9	102	70.36	-0.94	0.51	0.561789
4810	dm3.chr2R	15,719,939 – 15,720,036	- - - - - - - -	6611	15,719,939 – 15,720,036	+	3	97	97.25	-1.05	0.98	0.618755
4811	dm3.chr2R	15,721,393 – 15,721,452	- - - - - - - -	6612	15,721,393 – 15,721,452	+	11	65	84.71	-1.35	0.81	0.784339
4812	dm3.chr2R	15,722,126 – 15,722,242	- - - - - - - -	6613	15,722,126 – 15,722,242	-	9	118	83.75	-2.22	0.75	0.977748
4813	dm3.chr2R	15,730,525 – 15,730,638	- - - - - - - -	6614	15,730,525 – 15,730,638	-	12	120	95.00	-2.01	0.87	0.866235
4814	dm3.chr2R	15,734,666 – 15,734,740	- - - - - - - -	6615	15,734,666 – 15,734,740	-	4	76	59.59	-1.34	0.50	0.949969
4815	dm3.chr2R	15,736,576 – 15,736,687	- - - - - - - -	6616	15,736,576 – 15,736,687	-	11	119	86.27	-2.25	0.63	0.811760
4816	dm3.chr2R	15,738,449 – 15,738,543	- - - - - - - -	6617	15,738,449 – 15,738,540	+	4	107	58.71	-2.40	0.39	0.992104
4816	dm3.chr2R	15,738,449 – 15,738,543	- - - - - - - -	6618	15,738,449 – 15,738,543	+	4	104	60.53	-1.97	0.40	0.962755
4817	dm3.chr2R	15,744,864 – 15,744,959	- - - - - - - -	6619	15,744,864 – 15,744,959	-	7	107	74.72	-1.84	0.54	0.925450
4818	dm3.chr2R	15,745,114 – 15,745,220	- - - - - - - -	6620	15,745,114 – 15,745,220	+	6	109	78.48	-1.79	0.54	0.713757
4819	dm3.chr2R	15,766,870 – 15,766,968	- - CDS="CDS;ID=CDS_CG13872:2_516;Name=CG13872-cds;Parent=FBtr0086341;parent_type=mRNA" - - - - -	6621	15,766,870 – 15,766,968	-	7	106	62.79	-1.60	0.27	0.514226
4820	dm3.chr2R	15,775,444 – 15,775,589	- - - - - - - -	6622	15,775,444 – 15,775,589	-	5	145	90.34	-1.56	0.84	0.630542
4821	dm3.chr2R	15,777,354 – 15,777,448	- - - - - - - -	6623	15,777,354 – 15,777,448	-	6	96	89.47	-2.18	0.77	0.850832
4822	dm3.chr2R	15,778,562 – 15,778,703	- - - - - - - -	6624	15,778,562 – 15,778,678	+	11	118	77.19	-2.28	0.61	0.994550
				6625	15,778,562 – 15,778,678	-	11	118	77.19	-2.48	0.60	0.996696
				6626	15,778,599 – 15,778,703	+	8	114	76.62	-3.94	0.59	0.999771
				6627	15,778,599 – 15,778,703	-	8	114	76.62	-3.24	0.62	0.999275
4823	dm3.chr2R	15,780,277 – 15,780,404	- - - - - - - -	6628	15,780,277 – 15,780,379	+	12	115	72.19	-1.41	0.41	0.528849
4823	dm3.chr2R	15,780,277 – 15,780,404	- - - - - - - -	6629	15,780,304 – 15,780,404	+	11	116	68.24	-1.65	0.38	0.868314
4824	dm3.chr2R	15,790,472 – 15,790,570	- - - - - - - -	6630	15,790,472 – 15,790,570	+	9	104	72.89	-1.92	0.33	0.530549
4825	dm3.chr2R	15,798,959 – 15,799,069	- - - - - - - -	6631	15,798,959 – 15,799,069	+	12	120	76.99	-1.29	0.61	0.825198
4826	dm3.chr2R	15,812,660 – 15,812,750	- - - - - - - -	6632	15,812,660 – 15,812,750	-	9	94	69.86	-1.46	0.43	0.806489
4827	dm3.chr2R	15,819,025 – 15,819,118	- - - - - - - -	6633	15,819,025 – 15,819,118	-	12	113	86.62	-2.17	0.60	0.597428
4828	dm3.chr2R	15,822,672 – 15,822,790	- - - - - - - -	6634	15,822,672 – 15,822,790	+	11	136	69.49	-1.04	0.48	0.797884
4829	dm3.chr2R	15,822,813 – 15,822,921	- - - - - - - -	6635	15,822,813 – 15,822,921	+	5	108	87.93	-1.50	0.81	0.600614
4830	dm3.chr2R	15,828,557 – 15,828,649	- - - - - - - -	6636	15,828,557 – 15,828,649	-	12	120	87.98	-1.48	0.81	0.600216
4831	dm3.chr2R	15,836,977 – 15,837,072	- - - - - - - -	6637	15,836,977 – 15,837,072	-	4	114	66.14	-1.34	0.50	0.649671
4832	dm3.chr2R	15,860,395 – 15,860,486	- - - - - - - -	6638	15,860,395 – 15,860,486	-	12	119	82.89	-1.61	0.69	0.701774
4833	dm3.chr2R	15,861,560 – 15,861,652	- - - - - - - -	6639	15,861,560 – 15,861,652	-	12	114	73.73	-1.06	0.57	0.608269
4834	dm3.chr2R	15,871,609 – 15,871,702	- - - - - - - -	6640	15,871,609 – 15,871,702	+	6	99	72.98	-2.79	0.55	0.997663
4834	dm3.chr2R	15,871,609 – 15,871,702	- - - - - - - -	6641	15,871,609 – 15,871,702	-	6	99	72.98	-2.56	0.55	0.995436
4835	dm3.chr2R	15,874,475 – 15,874,572	- - - - - - - -	6642	15,874,475 – 15,874,572	-	7	97	76.71	-1.55	0.53	0.654462
4836	dm3.chr2R	15,879,622 – 15,879,752	- - - - - - - -	6643	15,879,622 – 15,879,724	+	11	115	75.43	-1.81	0.60	0.977757
4836	dm3.chr2R	15,879,622 – 15,879,752	- - - - - - - -	6644	15,879,650 – 15,879,752	+	11	121	73.33	-2.01	0.46	0.922843
4837	dm3.chr2R	15,880,803 – 15,880,862	- - - - - - - -	6645	15,880,803 – 15,880,862	-	11	68	69.07	-0.60	0.52	0.545734
4838	dm3.chr2R	15,883,357 – 15,883,472	- - - - - - - -	6646	15,883,357 – 15,883,472	-	11	120	93.99	-1.50	0.90	0.721500
4839	dm3.chr2R	15,890,983 – 15,891,033	- - - - - - - -	6647	15,890,983 – 15,891,033	-	6	50	95.60	-1.82	0.87	0.724254
4840	dm3.chr2R	15,901,741 – 15,901,843	- - - - - - - -	6648	15,901,741 – 15,901,843	-	7	113	70.28	-1.84	0.41	0.850279
4841	dm3.chr2R	15,910,427 – 15,910,522	- - - - - - - -	6649	15,910,427 – 15,910,522	-	5	95	84.76	-3.44	0.51	0.970257
4842	dm3.chr2R	15,913,677 – 15,913,774	- - - - - - - -	6650	15,913,677 – 15,913,774	+	7	97	76.55	-1.62	0.50	0.542690
4843	dm3.chr2R	15,920,263 – 15,920,367	- - - - - - - -	6651	15,920,263 – 15,920,367	+	7	110	76.42	-1.32	0.68	0.877147
4844	dm3.chr2R	15,928,302 – 15,928,433	- - - - - - - -	6652	15,928,302 – 15,928,402	+	10	119	62.48	-1.21	0.39	0.816586
				6653	15,928,302 – 15,928,402	-	10	119	62.48	-2.47	0.40	0.998130
				6654	15,928,329 – 15,928,433	-	7	118	80.97	-2.09	0.51	0.520026
4845	dm3.chr2R	15,934,308 – 15,934,410	- - - - - - - -	6655	15,934,308 – 15,934,410	+	11	120	83.05	-2.44	0.61	0.947912
4845	dm3.chr2R	15,934,308 – 15,934,410	- - - - - - - -	6656	15,934,308 – 15,934,410	-	11	120	83.05	-1.96	0.78	0.958490
4846	dm3.chr2R	15,936,140 – 15,936,235	- - - - - - - -	6657	15,936,140 – 15,936,235	-	11	111	83.13	-2.35	0.52	0.762493
4847	dm3.chr2R	15,939,689 – 15,939,781	- - - - - - - -	6658	15,939,689 – 15,939,781	-	11	106	56.66	-1.05	0.30	0.638946
4848	dm3.chr2R	15,942,985 – 15,943,044	- - - - - - - -	6659	15,942,985 – 15,943,044	+	5	66	77.93	-1.89	0.74	0.957314
4849	dm3.chr2R	15,951,363 – 15,951,454	- - - - - - - -	6660	15,951,363 – 15,951,454	+	9	112	77.56	-1.51	0.75	0.912059
4850	dm3.chr2R	15,955,134 – 15,955,271	- - - - - - - -	6661	15,955,134 – 15,955,236	+	8	112	79.64	-1.84	0.61	0.881163
				6662	15,955,134 – 15,955,236	-	8	112	79.64	-1.59	0.60	0.716231
				6663	15,955,166 – 15,955,271	+	12	117	81.88	-1.96	0.66	0.923311
4851	dm3.chr2R	15,956,830 – 15,956,898	- - - - - - - -	6664	15,956,830 – 15,956,898	+	3	72	62.62	-1.40	0.53	0.829128
4851	dm3.chr2R	15,956,830 – 15,956,898	- - - - - - - -	6665	15,956,830 – 15,956,898	-	3	72	62.62	-1.16	0.53	0.653036
4852	dm3.chr2R	15,965,868 – 15,965,976	- - - - - - - -	6666	15,965,868 – 15,965,976	+	12	115	85.47	-1.60	0.72	0.664347
4853	dm3.chr2R	15,974,188 – 15,974,289	- - - - - - - -	6667	15,974,188 – 15,974,289	-	3	102	79.02	-1.68	0.74	0.751643
4854	dm3.chr2R	15,979,611 – 15,979,705	- - - - - - - -	6668	15,979,611 – 15,979,705	+	10	112	72.31	-1.77	0.51	0.927486
4854	dm3.chr2R	15,979,611 – 15,979,705	- - - - - - - -	6669	15,979,611 – 15,979,705	-	10	112	72.31	-1.36	0.46	0.519532
4855	dm3.chr2R	15,980,177 – 15,980,268	- - - - - - - -	6670	15,980,177 – 15,980,268	-	6	91	78.04	-1.35	0.64	0.690234
4856	dm3.chr2R	15,982,328 – 15,982,436	- - - - - - - -	6671	15,982,328 – 15,982,436	+	11	110	73.43	-1.76	0.56	0.988766
4856	dm3.chr2R	15,982,328 – 15,982,436	- - - - - - - -	6672	15,982,328 – 15,982,436	-	11	110	73.43	-1.43	0.47	0.870769
4857	dm3.chr2R	16,041,203 – 16,041,326	- - - - - - - -	6673	16,041,203 – 16,041,296	+	9	99	74.45	-0.94	0.66	0.700021
4857	dm3.chr2R	16,041,203 – 16,041,326	- - - - - - - -	6674	16,041,222 – 16,041,326	+	7	112	66.51	-1.04	0.49	0.688406
4858	dm3.chr2R	16,045,778 – 16,045,874	- - - - - - - -	6675	16,045,778 – 16,045,874	+	7	97	74.83	-1.84	0.45	0.868713
4858	dm3.chr2R	16,045,778 – 16,045,874	- - - - - - - -	6676	16,045,778 – 16,045,874	-	7	97	74.83	-1.59	0.46	0.751573
4859	dm3.chr2R	16,051,060 – 16,051,159	- - - - - - - -	6677	16,051,060 – 16,051,159	+	7	106	75.88	-1.11	0.59	0.541287
4860	dm3.chr2R	16,062,980 – 16,063,114	- - - - - - - -	6678	16,062,980 – 16,063,090	-	7	114	81.05	-1.40	0.68	0.686579
4860	dm3.chr2R	16,062,980 – 16,063,114	- - - - - - - -	6679	16,063,019 – 16,063,114	-	6	95	73.81	-1.68	0.49	0.813870
4861	dm3.chr2R	16,066,229 – 16,066,326	- - - - - - - -	6680	16,066,229 – 16,066,326	+	3	97	88.66	-2.15	0.83	0.898773
4861	dm3.chr2R	16,066,229 – 16,066,326	- - - - - - - -	6681	16,066,229 – 16,066,326	-	3	97	88.66	-1.28	0.92	0.714376
4862	dm3.chr2R	16,069,399 – 16,069,490	- - - - - - - -	6682	16,069,399 – 16,069,490	-	9	105	68.91	-2.26	0.48	0.994902
4863	dm3.chr2R	16,073,589 – 16,073,698	- - - - - - - -	6683	16,073,589 – 16,073,698	+	4	121	60.09	-1.36	0.37	0.544144
4864	dm3.chr2R	16,074,994 – 16,075,101	- - - - - - - -	6684	16,074,994 – 16,075,101	+	8	123	73.45	-1.73	0.61	0.940215
4864	dm3.chr2R	16,074,994 – 16,075,101	- - - - - - - -	6685	16,074,994 – 16,075,101	-	8	123	73.45	-2.25	0.60	0.987796
4865	dm3.chr2R	16,077,298 – 16,077,405	- - - - - - - -	6686	16,077,298 – 16,077,389	+	8	100	84.97	-2.29	0.89	0.990420
				6687	16,077,298 – 16,077,389	-	8	100	84.97	-1.88	0.90	0.975310
				6688	16,077,314 – 16,077,405	+	11	111	85.63	-4.27	0.80	0.999398
				6689	16,077,314 – 16,077,405	-	11	111	85.63	-1.87	0.81	0.931152
4866	dm3.chr2R	16,082,584 – 16,082,694	- - - - - - - -	6690	16,082,584 – 16,082,694	+	12	120	84.77	-1.92	0.68	0.855627
4867	dm3.chr2R	16,086,201 – 16,086,354	- - - - - - - -	6691	16,086,201 – 16,086,303	+	5	111	91.46	-2.09	0.83	0.868483
				6692	16,086,232 – 16,086,332	+	6	109	73.96	-2.07	0.53	0.971352
				6693	16,086,232 – 16,086,332	-	6	109	73.96	-2.19	0.42	0.896649
				6694	16,086,252 – 16,086,354	+	5	109	93.05	-2.08	0.93	0.959658
4868	dm3.chr2R	16,097,291 – 16,097,366	- - - - - - - -	6695	16,097,291 – 16,097,366	+	9	83	76.86	-1.37	0.63	0.830589
4869	dm3.chr2R	16,101,416 – 16,101,513	- - - - - - - -	6696	16,101,416 – 16,101,513	+	9	110	70.25	-1.73	0.49	0.955915
4869	dm3.chr2R	16,101,416 – 16,101,513	- - - - - - - -	6697	16,101,416 – 16,101,513	-	9	110	70.25	-1.12	0.52	0.785917
4870	dm3.chr2R	16,106,720 – 16,106,816	- - - - - - - -	6698	16,106,720 – 16,106,816	+	11	96	97.46	-1.17	0.95	0.579763
4871	dm3.chr2R	16,108,442 – 16,108,560	- - - - - - - -	6699	16,108,442 – 16,108,534	-	9	93	73.49	-1.30	0.75	0.979326
4871	dm3.chr2R	16,108,442 – 16,108,560	- - - - - - - -	6700	16,108,467 – 16,108,560	+	12	115	77.25	-1.34	0.59	0.735367
4872	dm3.chr2R	16,113,160 – 16,113,258	- - - - - - - -	6701	16,113,160 – 16,113,258	-	7	104	68.72	-0.41	0.65	0.751588
4873	dm3.chr2R	16,116,169 – 16,116,232	- - - - - - - -	6702	16,116,169 – 16,116,232	-	9	76	91.19	-2.35	0.86	0.963937
4874	dm3.chr2R	16,116,985 – 16,117,090	FBnoncoding="tRNA;ID=FBtr0086312;Name=tRNA:G3:56EFa-RA;Parent=FBgn0011869;Dbxref=FlyBase_Annotation_IDs:CR30214-RA;score_text=Weakly" tRNAscann="Gly_chr2R_trna42" - - "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|4.6e-31" - - -	6703	16,116,985 – 16,117,090	+	14	112	70.25	-1.70	0.80	0.998591
4874	dm3.chr2R	16,116,985 – 16,117,090		6704	16,116,985 – 16,117,090	-	14	112	70.25	-1.49	0.81	0.997643
4875	dm3.chr2R	16,117,527 – 16,117,729	- - - - - - - -	6705	16,117,527 – 16,117,622	+	8	110	71.74	-2.74	0.48	0.995957
				6706	16,117,527 – 16,117,622	-	8	110	71.74	-2.68	0.54	0.997710
				6707	16,117,527 – 16,117,623	+	9	112	68.35	-2.51	0.35	0.977938
				6708	16,117,527 – 16,117,623	-	9	112	68.35	-2.48	0.44	0.995596
				6709	16,117,623 – 16,117,729	-	6	109	73.01	-1.25	0.68	0.939463
4876	dm3.chr2R	16,120,289 – 16,120,383	FBnoncoding="tRNA;ID=FBtr0086314;Name=tRNA:G3:56EFb-RA;Parent=FBgn0011870;Dbxref=FlyBase_Annotation_IDs:CR30138-RA;score_text=Weakly" tRNAscann="Gly_chr2R_trna43" - intron="intron;ID=intron_CG11044:2_CG11044:3;Name=CG11044-in;Parent=FBtr0086313;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|1.0e-31" - - -	6710	16,120,289 – 16,120,383	+	14	100	76.70	-1.96	0.92	0.994750
4876	dm3.chr2R	16,120,289 – 16,120,383		6711	16,120,289 – 16,120,383	-	14	100	76.70	-1.27	0.87	0.976073
4877	dm3.chr2R	16,123,918 – 16,124,054	- - - - - - - -	6712	16,123,918 – 16,124,015	+	6	97	92.85	-1.36	0.95	0.832898
				6713	16,123,918 – 16,124,015	-	6	97	92.85	-1.59	0.83	0.515634
				6714	16,123,941 – 16,124,054	+	5	113	99.29	-1.55	0.96	0.795965
				6715	16,123,941 – 16,124,054	-	5	113	99.29	-2.28	0.98	0.976847
4878	dm3.chr2R	16,130,395 – 16,130,502	- - CDS="CDS;ID=CDS_CG11208:4_524;Name=CG11208-cds;Parent=FBtr0086322;parent_type=mRNA" - - - - -	6716	16,130,395 – 16,130,502	+	14	107	79.97	-1.93	0.41	0.569473
4879	dm3.chr2R	16,140,732 – 16,140,825	- - - intron="intron;ID=intron_FBgn0034490:7_FBgn0034490:6;Name=CG9864-in;Parent=FBtr0086320;parent_type=mRNA" - - - -	6717	16,140,732 – 16,140,825	-	3	93	93.55	-2.35	0.84	0.897257
4880	dm3.chr2R	16,162,069 – 16,162,135	- - - - - - - -	6718	16,162,069 – 16,162,135	-	8	72	54.50	-1.16	0.26	0.520800
4881	dm3.chr2R	16,183,574 – 16,183,665	- - - - - - - -	6719	16,183,574 – 16,183,665	+	4	91	82.10	-1.61	0.77	0.719609
4882	dm3.chr2R	16,191,750 – 16,191,841	- - - - - - - -	6720	16,191,750 – 16,191,841	+	3	91	86.36	-2.53	0.83	0.971992
4883	dm3.chr2R	16,196,972 – 16,197,077	- - - - - - - -	6721	16,196,972 – 16,197,077	+	11	112	68.91	-1.21	0.53	0.969606
4883	dm3.chr2R	16,196,972 – 16,197,077	- - - - - - - -	6722	16,196,972 – 16,197,077	-	11	112	68.91	-2.81	0.63	0.999866
4884	dm3.chr2R	16,198,944 – 16,199,044	- - - - - - - -	6723	16,198,944 – 16,199,044	-	14	115	67.35	-0.85	0.52	0.900621
4885	dm3.chr2R	16,199,903 – 16,200,001	- - - intron="intron;ID=intron_FBgn0034501:6_FBgn0034501:4;Name=CG13868-in;Parent=FBtr0086298;parent_type=mRNA" - - - -	6724	16,199,903 – 16,200,001	-	4	98	95.92	-1.59	0.87	0.500000
4886	dm3.chr2R	16,202,395 – 16,202,485	- - - intron="intron;ID=intron_FBgn0034501:7_FBgn0034501:6;Name=CG13868-in;Parent=FBtr0086298;parent_type=mRNA" - - - -	6725	16,202,395 – 16,202,485	-	8	116	75.85	-2.05	0.42	0.551399
4887	dm3.chr2R	16,215,388 – 16,215,484	- - - - - - - -	6726	16,215,388 – 16,215,484	+	5	96	99.38	-0.75	1.01	0.523743
4888	dm3.chr2R	16,223,291 – 16,223,382	- - - - - - - -	6727	16,223,291 – 16,223,382	-	7	92	82.42	-1.71	0.58	0.566689
4889	dm3.chr2R	16,238,604 – 16,238,660	- - - - - - - -	6728	16,238,604 – 16,238,660	+	6	58	70.02	-1.80	0.33	0.536974
4890	dm3.chr2R	16,246,913 – 16,247,006	- - - - - - - -	6729	16,246,913 – 16,247,006	-	8	110	61.03	-2.05	0.19	0.500000
4891	dm3.chr2R	16,248,366 – 16,248,456	- - - - - - - -	6730	16,248,366 – 16,248,456	-	6	99	91.61	-1.63	0.90	0.836111
4892	dm3.chr2R	16,249,121 – 16,249,212	- - - - - - - -	6731	16,249,121 – 16,249,212	+	10	103	65.22	-2.42	0.24	0.937235
4893	dm3.chr2R	16,251,212 – 16,251,317	- - - - - - - -	6732	16,251,212 – 16,251,317	+	6	107	88.69	-2.37	0.73	0.902247
4894	dm3.chr2R	16,251,600 – 16,251,694	- - - - - - - -	6733	16,251,600 – 16,251,694	-	8	117	63.81	-1.41	0.37	0.765647
4895	dm3.chr2R	16,252,232 – 16,252,358	- - - - - - - -	6734	16,252,232 – 16,252,358	+	9	140	75.54	-1.27	0.55	0.659942
4895	dm3.chr2R	16,252,232 – 16,252,358	- - - - - - - -	6735	16,252,232 – 16,252,358	-	9	140	75.54	-1.32	0.51	0.554372
4896	dm3.chr2R	16,256,499 – 16,256,576	- - - - - - - -	6736	16,256,499 – 16,256,576	+	4	81	50.00	-1.33	0.40	0.959114
4896	dm3.chr2R	16,256,499 – 16,256,576	- - - - - - - -	6737	16,256,499 – 16,256,576	-	4	81	50.00	-0.92	0.50	0.971399
4897	dm3.chr2R	16,268,455 – 16,268,565	- - - - - - - -	6738	16,268,455 – 16,268,565	+	5	110	85.29	-2.51	0.68	0.928624
4898	dm3.chr2R	16,275,086 – 16,275,148	- - - - - - - -	6739	16,275,086 – 16,275,148	-	7	73	65.85	-1.74	0.39	0.787616
4899	dm3.chr2R	16,276,824 – 16,276,934	- - - - - - - -	6740	16,276,824 – 16,276,934	+	7	111	87.05	-2.14	0.72	0.875598
4900	dm3.chr2R	16,277,666 – 16,277,760	- - - - - - - -	6741	16,277,666 – 16,277,760	-	3	106	77.99	-1.98	0.62	0.694596
4901	dm3.chr2R	16,281,199 – 16,281,253	- - - - - - - -	6742	16,281,199 – 16,281,253	-	5	54	96.66	-1.91	0.97	0.948741
4902	dm3.chr2R	16,281,538 – 16,281,603	- - - - - - - -	6743	16,281,538 – 16,281,603	+	6	68	88.69	-1.88	0.84	0.891345
4903	dm3.chr2R	16,287,979 – 16,288,071	- - - - - - - -	6744	16,287,979 – 16,288,071	+	12	108	78.31	-1.34	0.62	0.809153
4904	dm3.chr2R	16,290,225 – 16,290,318	- - - - - - - -	6745	16,290,225 – 16,290,318	-	11	117	79.68	-2.12	0.51	0.783507
4905	dm3.chr2R	16,295,157 – 16,295,273	- - - - - - - -	6746	16,295,157 – 16,295,273	+	11	146	70.23	-2.04	0.35	0.715686
4906	dm3.chr2R	16,296,092 – 16,296,153	- - - - - - - -	6747	16,296,092 – 16,296,153	+	6	68	79.61	-1.53	0.67	0.740948
4907	dm3.chr2R	16,297,975 – 16,298,088	- - - - - - - -	6748	16,297,975 – 16,298,088	-	5	113	78.99	-1.41	0.84	0.913942
4908	dm3.chr2R	16,311,596 – 16,311,698	- - - - - - - -	6749	16,311,596 – 16,311,698	+	6	105	74.76	-2.21	0.55	0.980888
4908	dm3.chr2R	16,311,596 – 16,311,698	- - - - - - - -	6750	16,311,596 – 16,311,698	-	6	105	74.76	-1.69	0.50	0.788729
4909	dm3.chr2R	16,314,778 – 16,314,841	- - - intron="intron;ID=intron_FBgn0086604:1_FBgn0086604:2;Name=CG12484-in;Parent=FBtr0112774,FBtr0112775,FBtr0112776,FBtr0273284;parent_type=mRNA" - - - -	6751	16,314,778 – 16,314,841	-	7	69	71.06	-0.87	0.55	0.621378
4910	dm3.chr2R	16,318,220 – 16,318,271	- - - intron="intron;ID=intron_FBgn0086604:2_FBgn0086604:3;Name=CG12484-in;Parent=FBtr0112774,FBtr0112775,FBtr0112776;parent_type=mRNA" - - - -	6752	16,318,220 – 16,318,271	+	6	64	78.43	-1.42	0.81	0.888964
4910	dm3.chr2R	16,318,220 – 16,318,271		6753	16,318,220 – 16,318,271	-	6	64	78.43	-2.38	0.82	0.992777
4911	dm3.chr2R	16,327,762 – 16,327,814	- - - intron="intron;ID=intron_FBgn0086604:3_FBgn0086604:4;Name=CG12484-in;Parent=FBtr0112774,FBtr0112775,FBtr0112776;parent_type=mRNA" - - - -	6754	16,327,762 – 16,327,814	+	5	69	77.53	-1.92	0.58	0.772617
4911	dm3.chr2R	16,327,762 – 16,327,814		6755	16,327,762 – 16,327,814	-	5	69	77.53	-1.83	0.56	0.638293
4912	dm3.chr2R	16,334,278 – 16,334,395	- - - intron="intron;ID=intron_FBgn0086604:3_FBgn0086604:4;Name=CG12484-in;Parent=FBtr0112774,FBtr0112775,FBtr0112776;parent_type=mRNA" - - - -	6756	16,334,278 – 16,334,395	-	6	119	71.30	-1.37	0.52	0.822648
4913	dm3.chr2R	16,339,487 – 16,339,585	- - - intron="intron;ID=intron_FBgn0086604:3_FBgn0086604:4;Name=CG12484-in;Parent=FBtr0112774,FBtr0112775,FBtr0112776;parent_type=mRNA" - - - -	6757	16,339,487 – 16,339,581	-	6	96	90.35	-2.66	0.77	0.960987
4913	dm3.chr2R	16,339,487 – 16,339,585		6758	16,339,491 – 16,339,585	-	6	96	90.35	-1.97	0.78	0.756473
4914	dm3.chr2R	16,341,894 – 16,341,987	- - - intron="intron;ID=intron_FBgn0086604:3_FBgn0086604:4;Name=CG12484-in;Parent=FBtr0112774,FBtr0112775,FBtr0112776;parent_type=mRNA" - - - -	6759	16,341,894 – 16,341,987	+	5	93	91.01	-2.11	0.74	0.629901
4915	dm3.chr2R	16,375,207 – 16,375,306	- - - - - - - -	6760	16,375,207 – 16,375,306	-	8	108	67.15	-1.92	0.56	0.997208
4916	dm3.chr2R	16,376,504 – 16,376,614	- - - - - - - -	6761	16,376,504 – 16,376,614	+	9	113	84.13	-2.21	0.55	0.739352
4916	dm3.chr2R	16,376,504 – 16,376,614	- - - - - - - -	6762	16,376,504 – 16,376,614	-	9	113	84.13	-2.03	0.60	0.747263
4917	dm3.chr2R	16,388,199 – 16,388,312	- - - - - - - -	6763	16,388,199 – 16,388,312	-	12	121	75.48	-1.53	0.46	0.520543
4918	dm3.chr2R	16,413,076 – 16,413,131	- - - - - - - -	6764	16,413,076 – 16,413,131	+	6	55	87.01	-1.68	0.88	0.910644
4919	dm3.chr2R	16,414,208 – 16,414,272	- - CDS="CDS;ID=CDS_CG13422:1_509;Name=CG13422-cds;Parent=FBtr0086214;parent_type=mRNA" - - - - -	6765	16,414,208 – 16,414,272	+	9	66	70.91	-0.92	0.48	0.500000
4920	dm3.chr2R	16,418,152 – 16,418,249	- - - - - - - -	6766	16,418,152 – 16,418,249	-	7	117	63.86	-1.21	0.38	0.543355
4921	dm3.chr2R	16,429,234 – 16,429,331	- - - - - - - -	6767	16,429,234 – 16,429,331	-	5	97	88.56	-1.56	0.87	0.805180
4922	dm3.chr2R	16,449,205 – 16,449,309	- - - - - - - -	6768	16,449,205 – 16,449,309	-	10	119	64.73	-0.52	0.53	0.736324
4923	dm3.chr2R	16,449,457 – 16,449,661	- - - - - - - -	6769	16,449,457 – 16,449,561	-	6	110	82.66	-1.67	0.66	0.636842
				6770	16,449,484 – 16,449,600	-	6	116	78.07	-2.10	0.68	0.983714
				6771	16,449,561 – 16,449,661	-	5	119	82.14	-1.42	0.75	0.580196
4924	dm3.chr2R	16,456,157 – 16,456,259	- - - intron="intron;ID=intron_CG13432:2_CG13432:3;Name=l(2)05510-in;Parent=FBtr0086258;parent_type=mRNA" - - - -	6772	16,456,157 – 16,456,259	-	8	103	81.92	-2.40	0.77	0.986927
4925	dm3.chr2R	16,457,690 – 16,457,781	- - - intron="intron;ID=intron_CG13432:2_CG13432:3;Name=l(2)05510-in;Parent=FBtr0086258;parent_type=mRNA" - - - -	6773	16,457,690 – 16,457,781	-	10	92	83.01	-1.65	0.67	0.782742
4926	dm3.chr2R	16,461,564 – 16,461,663	- - - intron="intron;ID=intron_CG13432:2_CG13432:3;Name=l(2)05510-in;Parent=FBtr0086258;parent_type=mRNA" - - - -	6774	16,461,564 – 16,461,663	+	5	119	83.04	-2.00	0.60	0.530011
4927	dm3.chr2R	16,464,475 – 16,464,567	- - - intron="intron;ID=intron_CG13432:2_CG13432:3;Name=l(2)05510-in;Parent=FBtr0086258;parent_type=mRNA" - - - -	6775	16,464,475 – 16,464,567	-	4	94	73.55	-1.11	0.65	0.517833
4928	dm3.chr2R	16,466,324 – 16,466,417	- - - intron="intron;ID=intron_CG13432:2_CG13432:3;Name=l(2)05510-in;Parent=FBtr0086258;parent_type=mRNA" - - - -	6776	16,466,324 – 16,466,417	+	5	94	89.69	-1.38	0.91	0.767452
4929	dm3.chr2R	16,471,965 – 16,472,075	- - - - - - - -	6777	16,471,965 – 16,472,075	+	6	112	63.30	-1.88	0.30	0.825721
4930	dm3.chr2R	16,472,820 – 16,472,912	FBnoncoding="pre_miRNA;ID=FBtr0304516;Name=mir-992-RM;Parent=FBgn0262334;Alias=CR43041-RM;Dbxref=FlyBase_Annotation_IDs:CR43041-RM,miRBase:MI0005852" - - - - - - "mirBase_v16=dme-mir-992\|1.4e-46"	6778	16,472,820 – 16,472,912	+	7	106	53.81	-2.43	0.10	0.614044
4930	dm3.chr2R	16,472,820 – 16,472,912		6779	16,472,820 – 16,472,912	-	7	106	53.81	-2.82	0.13	0.939943
4931	dm3.chr2R	16,493,582 – 16,493,653	FBnoncoding="pre_miRNA;ID=FBtr0304180;Name=mir-7-RM;Parent=FBgn0262370;Alias=CR42883-RM;Dbxref=FlyBase_Annotation_IDs:CR42883-RM,miRBase:MI0000127" - - intron="intron;ID=intron_FBgn0015907:11_FBgn0015907:13;Name=bl-in;Parent=FBtr0301760;parent_type=mRNA" "Rfam_10.0=RF00053;mir-7;AAPT01021600.1/45421-45508\|6.7e-26" "Noncode_2.0=n178689_u177787_NW_045804_miRNA_Anopheles\|5.5e-11" "unique_Noncode_2.0=u177787_miRNA_Anopheles\|4.8e-11" "mirBase_v16=dya-mir-7\|2.3e-35"	6780	16,493,582 – 16,493,653	+	15	90	84.66	-3.37	0.85	0.998495
4931	dm3.chr2R	16,493,582 – 16,493,653		6781	16,493,582 – 16,493,653	-	15	90	84.66	-2.88	0.77	0.994573
4932	dm3.chr2R	16,498,228 – 16,498,319	- - - intron="intron;ID=intron_CG30147:4_CG30147:5;Name=Hil-in;Parent=FBtr0086255,FBtr0086256;parent_type=mRNA" - - - -	6782	16,498,228 – 16,498,319	-	11	104	65.27	-1.50	0.34	0.789421
4933	dm3.chr2R	16,504,358 – 16,504,462	- - - intron="intron;ID=intron_CG30147:1_CG30147:2;Name=Hil-in;Parent=FBtr0086255;parent_type=mRNA" - - - -	6783	16,504,358 – 16,504,462	-	11	117	72.57	-2.47	0.50	0.997334
4934	dm3.chr2R	16,505,726 – 16,505,801	- - - - - - - -	6784	16,505,726 – 16,505,801	-	6	77	77.09	-1.80	0.59	0.903586
4935	dm3.chr2R	16,506,058 – 16,506,157	- - - - - - - -	6785	16,506,058 – 16,506,157	+	5	113	77.06	-2.15	0.75	0.983395
4936	dm3.chr2R	16,545,375 – 16,545,472	FBnoncoding="tRNA;ID=FBtr0086234;Name=tRNA:CR30155-RA;Parent=FBgn0050155;Alias=CR30155-RA;Dbxref=FlyBase_Annotation_IDs:CR30155-RA;score_text=Weakly" tRNAscann="Trp_chr2R_trna44" - intron="intron;ID=intron_FBgn0034540:2_FBgn0034540:3;Name=Lrt-in;Parent=FBtr0302284;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;BABH01051411.1/1-69\|2.6e-29" - - -	6786	16,545,375 – 16,545,472	+	11	105	80.94	-0.93	0.90	0.871871
4936	dm3.chr2R	16,545,375 – 16,545,472		6787	16,545,375 – 16,545,472	-	11	105	80.94	-0.86	0.95	0.884213
4937	dm3.chr2R	16,555,258 – 16,555,368	- - - - - - - -	6788	16,555,258 – 16,555,368	-	11	119	64.72	-1.08	0.37	0.623520
4938	dm3.chr2R	16,556,347 – 16,556,452	- - CDS="CDS;ID=CDS_FBgn0000615:3_636;Name=exu-cds;Parent=FBtr0086244,FBtr0302285;parent_type=mRNA" - - - - -	6789	16,556,347 – 16,556,452	-	11	117	61.88	-1.98	0.26	0.862962
4939	dm3.chr2R	16,570,429 – 16,570,523	- - - - - - - -	6790	16,570,429 – 16,570,523	-	9	103	57.00	-1.35	0.26	0.714636
4940	dm3.chr2R	16,574,513 – 16,574,608	- - - - - - - -	6791	16,574,513 – 16,574,608	-	3	98	77.54	-2.04	0.57	0.522148
4941	dm3.chr2R	16,592,303 – 16,592,400	- - - intron="intron;ID=intron_FBgn0040726:1_FBgn0040726:2;Name=dpr-in;Parent=FBtr0086238;parent_type=mRNA" - - - -	6792	16,592,303 – 16,592,400	-	8	109	75.13	-1.31	0.68	0.931230
4942	dm3.chr2R	16,607,673 – 16,607,797	- - - intron="intron;ID=intron_FBgn0040726:1_FBgn0040726:2;Name=dpr-in;Parent=FBtr0086238;parent_type=mRNA" - - - -	6793	16,607,673 – 16,607,770	+	6	120	75.54	-1.91	0.55	0.832250
4942	dm3.chr2R	16,607,673 – 16,607,797		6794	16,607,702 – 16,607,797	+	8	118	70.21	-2.48	0.55	0.995525
4943	dm3.chr2R	16,608,375 – 16,608,476	- - - intron="intron;ID=intron_FBgn0040726:1_FBgn0040726:2;Name=dpr-in;Parent=FBtr0086238;parent_type=mRNA" - - - -	6795	16,608,375 – 16,608,476	+	10	114	75.16	-2.41	0.69	0.997478
4944	dm3.chr2R	16,610,431 – 16,610,494	- - - intron="intron;ID=intron_FBgn0040726:1_FBgn0040726:2;Name=dpr-in;Parent=FBtr0086238;parent_type=mRNA" - - - -	6796	16,610,431 – 16,610,494	-	6	70	70.70	-1.10	0.50	0.709475
4945	dm3.chr2R	16,617,844 – 16,617,943	- - CDS="CDS;ID=CDS_CG13442:2_518;Name=CG13442-cds;Parent=FBtr0086240;parent_type=mRNA" - - - - -	6797	16,617,844 – 16,617,943	+	6	101	76.34	-2.59	0.58	0.994116
4945	dm3.chr2R	16,617,844 – 16,617,943		6798	16,617,844 – 16,617,943	-	6	101	76.34	-2.80	0.58	0.996804
4946	dm3.chr2R	16,618,289 – 16,618,345	- - - - - - - -	6799	16,618,289 – 16,618,345	-	5	56	90.94	-1.12	1.00	0.874557
4947	dm3.chr2R	16,619,648 – 16,619,739	- - - - - - - -	6800	16,619,648 – 16,619,739	+	12	114	79.01	-1.75	0.71	0.939354
4947	dm3.chr2R	16,619,648 – 16,619,739	- - - - - - - -	6801	16,619,648 – 16,619,739	-	12	114	79.01	-1.77	0.63	0.877982
4948	dm3.chr2R	16,624,607 – 16,624,702	- - - intron="intron;ID=intron_FBgn0040726:4_FBgn0040726:5;Name=dpr-in;Parent=FBtr0086238;parent_type=mRNA" - - - -	6802	16,624,607 – 16,624,702	-	10	119	72.78	-1.70	0.56	0.957800
4949	dm3.chr2R	16,626,557 – 16,626,650	- - - intron="intron;ID=intron_FBgn0040726:4_FBgn0040726:5;Name=dpr-in;Parent=FBtr0086238;parent_type=mRNA" - - - -	6803	16,626,557 – 16,626,650	-	12	120	85.17	-1.65	0.73	0.606539
4950	dm3.chr2R	16,633,767 – 16,633,858	- - - intron="intron;ID=intron_FBgn0040726:6_FBgn0040726:7;Name=dpr-in;Parent=FBtr0086238;parent_type=mRNA" - - - -	6804	16,633,767 – 16,633,858	+	7	92	68.24	-2.11	0.31	0.741169
4950	dm3.chr2R	16,633,767 – 16,633,858		6805	16,633,767 – 16,633,858	-	7	92	68.24	-1.88	0.34	0.702250
4951	dm3.chr2R	16,640,878 – 16,640,975	- - CDS="CDS;ID=CDS_FBgn0085231:2_575;Name=CG34202-cds;Parent=FBtr0112395;parent_type=mRNA" - - - - -	6806	16,640,878 – 16,640,975	-	7	97	70.36	-2.82	0.36	0.983776
4952	dm3.chr2R	16,646,663 – 16,646,768	- - - - - - - -	6807	16,646,663 – 16,646,759	+	9	115	70.73	-2.31	0.44	0.970642
4952	dm3.chr2R	16,646,663 – 16,646,768	- - - - - - - -	6808	16,646,668 – 16,646,768	+	9	109	69.21	-2.26	0.39	0.974084
4953	dm3.chr2R	16,653,028 – 16,653,105	- - - - - - - -	6809	16,653,028 – 16,653,105	+	10	83	75.18	-1.98	0.59	0.983040
4953	dm3.chr2R	16,653,028 – 16,653,105	- - - - - - - -	6810	16,653,028 – 16,653,105	-	10	83	75.18	-1.05	0.59	0.662260
4954	dm3.chr2R	16,658,873 – 16,658,970	- - - - - - - -	6811	16,658,873 – 16,658,970	-	5	97	85.67	-1.52	0.82	0.767559
4955	dm3.chr2R	16,660,199 – 16,660,298	- - - - - - - -	6812	16,660,199 – 16,660,298	+	4	99	78.17	-1.88	0.77	0.938137
4955	dm3.chr2R	16,660,199 – 16,660,298	- - - - - - - -	6813	16,660,199 – 16,660,298	-	4	99	78.17	-1.54	0.70	0.664297
4956	dm3.chr2R	16,660,901 – 16,660,959	- - - - - - - -	6814	16,660,901 – 16,660,959	-	7	60	74.17	-2.04	0.43	0.920178
4957	dm3.chr2R	16,678,296 – 16,678,354	- - - intron="intron;ID=intron_FBgn0034550:3_FBgn0034550:2;Name=CG15226-in;Parent=FBtr0071564;parent_type=mRNA" - - - -	6815	16,678,296 – 16,678,354	+	5	58	75.30	-1.66	0.75	0.968747
4958	dm3.chr2R	16,681,667 – 16,681,765	- - - - - - - -	6816	16,681,667 – 16,681,765	+	6	107	75.85	-1.79	0.45	0.550656
4959	dm3.chr2R	16,681,973 – 16,682,064	- - - - - - - -	6817	16,681,973 – 16,682,064	-	8	91	91.45	-1.71	0.80	0.593343
4960	dm3.chr2R	16,682,712 – 16,682,772	- - - - - - - -	6818	16,682,712 – 16,682,772	-	5	60	96.67	-1.28	0.95	0.656692
4961	dm3.chr2R	16,683,679 – 16,683,796	- - - - - - - -	6819	16,683,679 – 16,683,796	+	7	122	70.00	-2.21	0.26	0.567153
4962	dm3.chr2R	16,688,945 – 16,689,002	- - - - - - - -	6820	16,688,945 – 16,689,002	+	7	57	72.43	-1.12	0.51	0.671898
4963	dm3.chr2R	16,691,907 – 16,691,997	- - - - - - - -	6821	16,691,907 – 16,691,997	-	4	90	72.57	-1.30	0.61	0.687278
4964	dm3.chr2R	16,699,415 – 16,699,511	- - - - - - - -	6822	16,699,415 – 16,699,511	+	8	109	59.49	-1.24	0.31	0.615891
4965	dm3.chr2R	16,702,566 – 16,702,656	- - - - - - - -	6823	16,702,566 – 16,702,656	+	6	97	63.25	-1.15	0.34	0.544963
4966	dm3.chr2R	16,703,229 – 16,703,324	- - - - - - - -	6824	16,703,229 – 16,703,324	-	6	118	70.63	-1.30	0.49	0.561096
4967	dm3.chr2R	16,703,485 – 16,703,575	- - - - - - - -	6825	16,703,485 – 16,703,575	-	6	112	62.81	-1.20	0.43	0.781403
4968	dm3.chr2R	16,705,080 – 16,705,131	- - - - - - - -	6826	16,705,080 – 16,705,131	-	4	51	93.79	-2.06	0.94	0.957750
4969	dm3.chr2R	16,709,113 – 16,709,208	- - - - - - - -	6827	16,709,113 – 16,709,208	-	8	105	80.39	-2.37	0.46	0.734825
4970	dm3.chr2R	16,722,375 – 16,722,506	- - - - - - - -	6828	16,722,375 – 16,722,476	+	4	113	79.13	-2.16	0.65	0.894451
				6829	16,722,408 – 16,722,506	+	5	117	69.03	-2.23	0.71	0.996848
				6830	16,722,408 – 16,722,506	-	5	117	69.03	-2.23	0.52	0.983041
4971	dm3.chr2R	16,734,147 – 16,734,237	- - - - - - - -	6831	16,734,147 – 16,734,237	-	6	92	70.13	-1.61	0.47	0.858009
4972	dm3.chr2R	16,740,231 – 16,740,342	- - - - - - - -	6832	16,740,231 – 16,740,342	-	10	116	71.51	-1.18	0.45	0.658716
4973	dm3.chr2R	16,750,878 – 16,750,968	- - - - - - - -	6833	16,750,878 – 16,750,968	+	5	92	62.47	-1.81	0.29	0.547731
4974	dm3.chr2R	16,751,604 – 16,751,678	- - - - - - - -	6834	16,751,604 – 16,751,678	-	6	93	84.72	-1.93	0.80	0.900786
4975	dm3.chr2R	16,786,056 – 16,786,110	FBnoncoding="ncRNA;ID=FBtr0305615;Name=CR43160-RA;Parent=FBgn0262690;Dbxref=FlyBase_Annotation_IDs:CR43160-RA;score_text=Strongly" - - - - - - -	6835	16,786,056 – 16,786,110	+	7	61	81.19	-4.21	0.54	0.999318
4976	dm3.chr2R	16,788,914 – 16,789,022	- - - - - - - -	6836	16,788,914 – 16,789,022	-	7	114	67.63	-0.88	0.49	0.510731
4977	dm3.chr2R	16,803,175 – 16,803,266	- - - - - - - -	6837	16,803,175 – 16,803,266	-	4	106	72.71	-2.56	0.53	0.972071
4978	dm3.chr2R	16,819,861 – 16,819,971	- - - intron="intron;ID=intron_CG10052:4_CG10052:5;Name=Rx-in;Parent=FBtr0071518;parent_type=mRNA" - - - -	6838	16,819,861 – 16,819,970	+	11	120	75.38	-1.59	0.57	0.879980
				6839	16,819,861 – 16,819,970	-	11	120	75.38	-2.44	0.45	0.961213
				6840	16,819,862 – 16,819,971	+	11	120	75.50	-1.68	0.57	0.910077
				6841	16,819,862 – 16,819,971	-	11	120	75.50	-2.47	0.45	0.964671
4979	dm3.chr2R	16,819,996 – 16,820,133	- - - intron="intron;ID=intron_CG10052:4_CG10052:5;Name=Rx-in;Parent=FBtr0071518;parent_type=mRNA" - - - -	6842	16,819,996 – 16,820,133	-	6	157	81.14	-2.30	0.46	0.529523
4980	dm3.chr2R	16,820,767 – 16,820,867	- - - intron="intron;ID=intron_CG10052:4_CG10052:5;Name=Rx-in;Parent=FBtr0071518;parent_type=mRNA" - - - -	6843	16,820,767 – 16,820,867	+	10	114	82.98	-2.20	0.75	0.975442
4981	dm3.chr2R	16,828,740 – 16,828,849	- - - - - - - -	6844	16,828,740 – 16,828,849	+	11	120	63.87	-0.96	0.55	0.984978
4982	dm3.chr2R	16,837,027 – 16,837,132	- - - - - - - -	6845	16,837,027 – 16,837,132	-	12	120	76.34	-1.96	0.43	0.779512
4983	dm3.chr2R	16,841,217 – 16,841,311	- - - - - - - -	6846	16,841,217 – 16,841,311	-	11	108	66.18	-0.25	0.54	0.614346
4984	dm3.chr2R	16,844,123 – 16,844,213	- - - intron="intron;ID=intron_CG33152:3_CG33152:4;Name=hbn-in;Parent=FBtr0071556;parent_type=mRNA" - - - -	6847	16,844,123 – 16,844,213	-	12	106	83.16	-1.28	0.71	0.564913
4985	dm3.chr2R	16,856,744 – 16,856,837	- - - - - - - -	6848	16,856,744 – 16,856,837	+	11	96	84.97	-1.61	0.69	0.648201
4986	dm3.chr2R	16,869,555 – 16,869,674	- - - intron="intron;ID=intron_CG9313:3_CG9313:4;Name=CG9313-in;Parent=FBtr0071521;parent_type=mRNA" - - - -	6849	16,869,555 – 16,869,674	+	13	120	64.85	-0.53	0.46	0.650488
4987	dm3.chr2R	16,888,270 – 16,888,347	- - CDS="CDS;ID=CDS_FBgn0034570:2_504;Name=CG10543-cds;Parent=FBtr0303195;parent_type=mRNA" intron="intron;ID=intron_FBgn0034570:1_FBgn0034570:3;Name=CG10543-in;Parent=FBtr0071524;parent_type=mRNA" - - - -	6850	16,888,270 – 16,888,347	+	10	79	62.71	-1.90	0.25	0.834606
4988	dm3.chr2R	16,911,159 – 16,911,270	- - CDS="CDS;ID=CDS_FBgn0050296:13_658;Name=RIC-3-cds;Parent=FBtr0071527,FBtr0071528,FBtr0113371,FBtr0301892,FBtr0301893,FBtr0301894,FBtr0301899,FBtr0301902;parent_type=mRNA" - - - - -	6851	16,911,159 – 16,911,270	+	13	118	82.34	-1.53	0.65	0.748247
4989	dm3.chr2R	16,917,405 – 16,917,497	- - - - - - - -	6852	16,917,405 – 16,917,497	-	6	98	80.34	-1.21	0.70	0.517078
4990	dm3.chr2R	16,926,948 – 16,927,068	- - - - - - - -	6853	16,926,948 – 16,927,068	+	3	122	57.70	-1.02	0.51	0.736055
4991	dm3.chr2R	16,933,256 – 16,933,311	- - - - - - - -	6854	16,933,256 – 16,933,311	+	4	65	77.60	-1.68	0.65	0.772410
4992	dm3.chr2R	16,983,547 – 16,983,601	- - - intron="intron;ID=intron_FBgn0085425:3_FBgn0085425:6;Name=CG34396-in;Parent=FBtr0112644;parent_type=mRNA" - - - -	6855	16,983,547 – 16,983,601	+	4	54	87.23	-1.02	0.93	0.641521
4992	dm3.chr2R	16,983,547 – 16,983,601		6856	16,983,547 – 16,983,601	-	4	54	87.23	-2.75	0.94	0.995424
4993	dm3.chr2R	16,998,675 – 16,998,772	- - - intron="intron;ID=intron_CG9398:7_CG9398:2;Name=king-tubby-in;Parent=FBtr0089600;parent_type=mRNA" - - - -	6857	16,998,675 – 16,998,772	+	6	98	90.34	-2.20	0.78	0.871561
4993	dm3.chr2R	16,998,675 – 16,998,772		6858	16,998,675 – 16,998,772	-	6	98	90.34	-2.06	0.69	0.506321
4994	dm3.chr2R	17,000,710 – 17,000,813	- - - intron="intron;ID=intron_CG9398:7_CG9398:2;Name=king-tubby-in;Parent=FBtr0089600;parent_type=mRNA" - - - -	6859	17,000,710 – 17,000,813	+	6	117	58.12	-0.93	0.45	0.887872
4995	dm3.chr2R	17,020,514 – 17,020,606	- - - intron="intron;ID=intron_CG30388:2_CG30388:3;Name=Magi-in;Parent=FBtr0071636;parent_type=mRNA" - - - -	6860	17,020,514 – 17,020,606	-	8	108	66.51	-1.58	0.33	0.571772
4996	dm3.chr2R	17,020,891 – 17,020,985	- - - intron="intron;ID=intron_CG30388:2_CG30388:3;Name=Magi-in;Parent=FBtr0071636;parent_type=mRNA" - - - -	6861	17,020,891 – 17,020,985	+	6	96	76.78	-1.39	0.59	0.711567
4996	dm3.chr2R	17,020,891 – 17,020,985		6862	17,020,891 – 17,020,985	-	6	96	76.78	-1.81	0.70	0.973679
4997	dm3.chr2R	17,021,088 – 17,021,181	- - - intron="intron;ID=intron_CG30388:2_CG30388:3;Name=Magi-in;Parent=FBtr0071636;parent_type=mRNA" - - - -	6863	17,021,088 – 17,021,181	-	5	93	90.31	-1.97	0.82	0.822686
4998	dm3.chr2R	17,023,187 – 17,023,295	- - - intron="intron;ID=intron_CG30388:2_CG30388:3;Name=Magi-in;Parent=FBtr0071636;parent_type=mRNA" - - - -	6864	17,023,187 – 17,023,287	+	7	120	66.14	-1.55	0.40	0.686844
4998	dm3.chr2R	17,023,187 – 17,023,295		6865	17,023,193 – 17,023,295	+	7	120	66.13	-1.65	0.43	0.838583
4999	dm3.chr2R	17,025,832 – 17,025,929	- - CDS="CDS;ID=CDS_CG30388:2_501;Name=Magi-cds;Parent=FBtr0071636;parent_type=mRNA" - - - - -	6866	17,025,832 – 17,025,929	+	7	106	76.63	-1.30	0.63	0.777514
5000	dm3.chr2R	17,031,936 – 17,032,027	- - CDS="CDS;ID=CDS_FBgn0021872:2_575;Name=Xbp1-cds;Parent=FBtr0300236;parent_type=mRNA" - - - - -	6867	17,031,936 – 17,032,027	+	13	112	68.17	-1.43	0.53	0.978326
5001	dm3.chr2R	17,042,966 – 17,043,081	- - - - - - - -	6868	17,042,966 – 17,043,081	-	11	122	69.39	-1.08	0.55	0.958127
5002	dm3.chr2R	17,043,143 – 17,043,278	- - CDS="CDS;ID=CDS_FBgn0050389:8_611;Name=CG30389-cds;Parent=FBtr0071632,FBtr0071633;parent_type=mRNA" - - - - -	6869	17,043,143 – 17,043,248	-	12	121	77.60	-1.37	0.56	0.600036
5002	dm3.chr2R	17,043,143 – 17,043,278		6870	17,043,183 – 17,043,278	-	10	111	64.77	-0.32	0.58	0.835776
5003	dm3.chr2R	17,055,566 – 17,055,713	- - CDS="CDS;ID=CDS_FBgn0034598:9_578;Name=CG4266-cds;Parent=FBtr0113100;parent_type=mRNA" - - - - -	6871	17,055,566 – 17,055,713	+	14	161	75.47	-2.00	0.44	0.914741
5004	dm3.chr2R	17,068,465 – 17,068,557	- - - intron="intron;ID=intron_CG9441:2_CG9441:3;Name=Pu-in;Parent=FBtr0071578,FBtr0071579,FBtr0071580;parent_type=mRNA" - - - -	6872	17,068,465 – 17,068,557	+	6	99	68.72	-2.55	0.53	0.998819
5004	dm3.chr2R	17,068,465 – 17,068,557		6873	17,068,465 – 17,068,557	-	6	99	68.72	-0.70	0.57	0.712498
5005	dm3.chr2R	17,070,182 – 17,070,258	FBnoncoding="tRNA;ID=FBtr0071626;Name=tRNA:CR30209-RA;Parent=FBgn0050209;Alias=CR30209-RA;Dbxref=FlyBase_Annotation_IDs:CR30209-RA;score_text=Weakly" tRNAscann="Trp_chr2R_trna56" - - "Rfam_10.0=RF00005;tRNA;AACT01024226.1/911-979\|4.8e-30" - - -	6874	17,070,182 – 17,070,258	+	14	91	84.69	-1.19	0.88	0.826085
5005	dm3.chr2R	17,070,182 – 17,070,258		6875	17,070,182 – 17,070,258	-	14	91	84.69	-1.03	0.90	0.781309
5006	dm3.chr2R	17,070,358 – 17,070,433	FBnoncoding="tRNA;ID=FBtr0071581;Name=tRNA:G3:57BCb-RA;Parent=FBgn0011872;Dbxref=FlyBase_Annotation_IDs:CR30210-RA;score_text=Weakly" tRNAscann="Gly_chr2R_trna47" - - "Rfam_10.0=RF00005;tRNA;ABKE01000748.1/11006-11077\|7.7e-32" "Noncode_2.0=n122145_u121243_DQ595536_piRNA_human\|8.9e-07" "unique_Noncode_2.0=u121243_piRNA_human\|7.7e-07" -	6876	17,070,358 – 17,070,433	+	14	83	79.28	-1.68	0.81	0.987718
5006	dm3.chr2R	17,070,358 – 17,070,433		6877	17,070,358 – 17,070,433	-	14	83	79.28	-1.86	0.80	0.992199
5007	dm3.chr2R	17,083,844 – 17,083,955	- - - intron="intron;ID=intron_CG15658:1_CG15658:2;Name=CG15658-in;Parent=FBtr0071583;parent_type=mRNA" - - - -	6878	17,083,844 – 17,083,955	+	8	114	72.82	-1.90	0.43	0.869869
5008	dm3.chr2R	17,085,947 – 17,086,121	- - CDS="CDS;ID=CDS_CG15658:5_526;Name=CG15658-cds;Parent=FBtr0071583;parent_type=mRNA" intron="intron;ID=intron_CG15658:4_CG15658:5;Name=CG15658-in;Parent=FBtr0071583;parent_type=mRNA" - - - -	6879	17,085,947 – 17,086,121	-	12	182	66.57	-0.72	0.47	0.812262
5009	dm3.chr2R	17,089,670 – 17,089,727	- - - intron="intron;ID=intron_FBgn0034603:1_FBgn0034603:2;Name=Glycogenin-in;Parent=FBtr0089601,FBtr0302214;parent_type=mRNA" - - - -	6880	17,089,670 – 17,089,727	-	5	57	97.19	-0.89	1.01	0.694759
5010	dm3.chr2R	17,090,098 – 17,090,197	- - - intron="intron;ID=intron_FBgn0034603:1_FBgn0034603:2;Name=Glycogenin-in;Parent=FBtr0089601,FBtr0302214;parent_type=mRNA" - - - -	6881	17,090,098 – 17,090,197	+	5	99	88.50	-1.12	0.92	0.649608
5010	dm3.chr2R	17,090,098 – 17,090,197		6882	17,090,098 – 17,090,197	-	5	99	88.50	-1.60	0.92	0.898369
5011	dm3.chr2R	17,092,114 – 17,092,251	- - CDS="CDS;ID=CDS_FBgn0034603:2_635;Name=Glycogenin-cds;Parent=FBtr0089601;parent_type=mRNA" - - - - -	6883	17,092,114 – 17,092,234	+	14	120	80.95	-1.38	0.60	0.663818
				6884	17,092,154 – 17,092,251	+	14	120	75.57	-1.34	0.67	0.905291
				6885	17,092,154 – 17,092,251	-	14	120	75.57	-1.68	0.47	0.665732
5012	dm3.chr2R	17,106,413 – 17,106,531	- - CDS="CDS;ID=CDS_CG18375:8_628;Name=ASPP-cds;Parent=FBtr0071622,FBtr0071623;parent_type=mRNA" - - - - -	6886	17,106,413 – 17,106,531	-	12	118	78.26	-0.67	0.72	0.513100
5013	dm3.chr2R	17,108,775 – 17,108,867	- - CDS="CDS;ID=CDS_CG18375:5_628;Name=ASPP-cds;Parent=FBtr0071622,FBtr0071623;parent_type=mRNA" - - - - -	6887	17,108,775 – 17,108,867	+	13	117	64.16	-0.91	0.45	0.849863
5014	dm3.chr2R	17,110,259 – 17,110,349	- - - intron="intron;ID=intron_CG18375:3_CG18375:4;Name=ASPP-in;Parent=FBtr0071622,FBtr0071623;parent_type=mRNA" - - - -	6888	17,110,259 – 17,110,349	+	6	116	70.62	-0.89	0.64	0.632943
5015	dm3.chr2R	17,110,694 – 17,110,795	- - CDS="CDS;ID=CDS_CG18375:3_628;Name=ASPP-cds;Parent=FBtr0071622,FBtr0071623;parent_type=mRNA" - - - - -	6889	17,110,694 – 17,110,795	+	14	114	84.67	-1.44	0.69	0.627490
5016	dm3.chr2R	17,111,852 – 17,111,953	- - - - - - - -	6890	17,111,852 – 17,111,953	-	9	117	69.58	-2.00	0.50	0.987356
5017	dm3.chr2R	17,117,893 – 17,117,987	- - - - - - - -	6891	17,117,893 – 17,117,987	+	6	95	78.09	-1.29	0.65	0.700371
5018	dm3.chr2R	17,122,689 – 17,122,781	- - - - - - - -	6892	17,122,689 – 17,122,781	-	3	105	80.32	-1.75	0.76	0.780613
5019	dm3.chr2R	17,125,372 – 17,125,474	- - - - - - - -	6893	17,125,372 – 17,125,474	-	4	105	62.54	-1.40	0.42	0.783333
5020	dm3.chr2R	17,134,865 – 17,134,923	- - - intron="intron;ID=intron_CG18375:1_CG18375:2;Name=ASPP-in;Parent=FBtr0071622;parent_type=mRNA" - - - -	6894	17,134,865 – 17,134,923	+	6	75	65.55	-0.51	0.70	0.761391
5021	dm3.chr2R	17,139,188 – 17,139,281	- - - - - - - -	6895	17,139,188 – 17,139,281	-	6	117	62.83	-1.50	0.33	0.514046
5022	dm3.chr2R	17,142,620 – 17,142,713	- - - - - - - -	6896	17,142,620 – 17,142,713	-	8	94	79.26	-2.33	0.57	0.966504
5023	dm3.chr2R	17,146,532 – 17,146,684	- - - intron="intron;ID=intron_FBgn0085426:2_FBgn0085426:4;Name=Rgk3-in;Parent=FBtr0305983;parent_type=mRNA" - - - -	6897	17,146,532 – 17,146,647	-	5	118	88.71	-2.33	0.66	0.668366
5023	dm3.chr2R	17,146,532 – 17,146,684		6898	17,146,567 – 17,146,684	-	5	117	88.44	-2.30	0.68	0.753872
5024	dm3.chr2R	17,163,425 – 17,163,523	- - - intron="intron;ID=intron_FBgn0085426:5_FBgn0085426:6;Name=Rgk3-in;Parent=FBtr0112646,FBtr0305983;parent_type=mRNA" - - - -	6899	17,163,425 – 17,163,523	+	11	119	63.64	-4.31	0.17	0.998391
5024	dm3.chr2R	17,163,425 – 17,163,523		6900	17,163,425 – 17,163,523	-	11	119	63.64	-3.86	0.18	0.995994
5025	dm3.chr2R	17,170,182 – 17,170,276	- - - intron="intron;ID=intron_CG10069:8_CG10069:2;Name=CG10069-in;Parent=FBtr0071590;parent_type=mRNA" - - - -	6901	17,170,182 – 17,170,276	+	6	96	82.54	-1.63	0.67	0.679712
5026	dm3.chr2R	17,185,496 – 17,185,569	- - - intron="intron;ID=intron_FBgn0261554:1_FBgn0261554:5;Name=CG42672-in;Parent=FBtr0302702,FBtr0302701;parent_type=mRNA" - - - -	6902	17,185,496 – 17,185,569	+	9	81	68.76	-1.09	0.63	0.974533
5027	dm3.chr2R	17,200,084 – 17,200,176	- - - - - - - -	6903	17,200,084 – 17,200,176	+	9	116	58.75	-1.49	0.28	0.545100
5028	dm3.chr2R	17,211,690 – 17,211,799	- - CDS="CDS;ID=CDS_FBgn0020306:3_585;Name=dom-cds;Parent=FBtr0071602,FBtr0071603,FBtr0071604;parent_type=mRNA" - - - - -	6904	17,211,690 – 17,211,799	+	12	110	87.63	-1.70	0.81	0.883213
5028	dm3.chr2R	17,211,690 – 17,211,799		6905	17,211,690 – 17,211,799	-	12	110	87.63	-2.41	0.75	0.972967
5029	dm3.chr2R	17,212,695 – 17,212,794	FBnoncoding="snoRNA;ID=FBtr0114299;Name=snoRNA:Me28S-A2589a-RA;Parent=FBgn0086023;Dbxref=FlyBase_Annotation_IDs:CR34652-RA,REFSEQ:NR_003810;score_text=Weakly" - - intron="intron;ID=intron_FBgn0020306:4_FBgn0020306:5;Name=dom-in;Parent=FBtr0071602,FBtr0071603,FBtr0071604,FBtr0301350;parent_type=mRNA" "Rfam_10.0=RF00529;snoMe28S-Am2589;AAGH01006569.1/1638-1746\|2.7e-29" - - -	6906	17,212,695 – 17,212,794	+	8	99	75.18	-2.63	0.60	0.996471
5029	dm3.chr2R	17,212,695 – 17,212,794		6907	17,212,695 – 17,212,794	-	8	99	75.18	-2.00	0.38	0.521197
5030	dm3.chr2R	17,221,200 – 17,221,300	- - CDS="CDS;ID=CDS_FBgn0020306:12_585;Name=dom-cds;Parent=FBtr0071602,FBtr0071603,FBtr0071604;parent_type=mRNA" - - - - -	6908	17,221,200 – 17,221,300	+	15	109	68.43	-1.19	0.34	0.531358
5031	dm3.chr2R	17,221,461 – 17,221,595	FBnoncoding="snoRNA;ID=FBtr0113525;Name=snoRNA:Psi18S-1389a-RA;Parent=FBgn0083046;Dbxref=FlyBase_Annotation_IDs:CR34556-RA,REFSEQ:NR_003822;score_text=Weakly" - - intron="intron;ID=intron_FBgn0020306:12_FBgn0020306:14;Name=dom-in;Parent=FBtr0071604;parent_type=mRNA" - - - -	6909	17,221,461 – 17,221,595	+	12	140	68.57	-0.93	0.44	0.629409
5032	dm3.chr2R	17,228,316 – 17,228,413	- - CDS="CDS;ID=CDS_FBgn0020306:17_585;Name=dom-cds;Parent=FBtr0071602;parent_type=mRNA" - - - - -	6910	17,228,316 – 17,228,413	+	7	117	76.43	-2.47	0.68	0.994151
5032	dm3.chr2R	17,228,316 – 17,228,413		6911	17,228,316 – 17,228,413	-	7	117	76.43	-1.42	0.66	0.818168
5033	dm3.chr2R	17,254,978 – 17,255,078	- - - intron="intron;ID=intron_FBgn0000395:7_FBgn0000395:6;Name=cv-2-in;Parent=FBtr0071610;parent_type=mRNA" - - - -	6912	17,254,978 – 17,255,078	-	9	108	70.80	-2.31	0.33	0.836774
5034	dm3.chr2R	17,256,139 – 17,256,245	- - - intron="intron;ID=intron_FBgn0000395:7_FBgn0000395:6;Name=cv-2-in;Parent=FBtr0071610;parent_type=mRNA" - - - -	6913	17,256,139 – 17,256,245	+	6	114	78.22	-2.00	0.63	0.938648
5034	dm3.chr2R	17,256,139 – 17,256,245		6914	17,256,139 – 17,256,245	-	6	114	78.22	-2.02	0.61	0.931197
5035	dm3.chr2R	17,263,149 – 17,263,285	- - - intron="intron;ID=intron_FBgn0000395:7_FBgn0000395:6;Name=cv-2-in;Parent=FBtr0071610;parent_type=mRNA" - - - -	6915	17,263,149 – 17,263,285	+	5	159	78.65	-1.25	0.70	0.512657
5036	dm3.chr2R	17,295,993 – 17,296,113	- - - intron="intron;ID=intron_FBgn0010415:10_FBgn0010415:9;Name=Sdc-in;Parent=FBtr0071706,FBtr0071707,FBtr0071705,FBtr0273206,FBtr0301557,FBtr0305897;parent_type=mRNA" - - - -	6916	17,295,993 – 17,296,113	+	5	120	86.41	-1.83	0.72	0.611419
5037	dm3.chr2R	17,300,502 – 17,300,596	- - - intron="intron;ID=intron_FBgn0010415:11_FBgn0010415:10;Name=Sdc-in;Parent=FBtr0305897;parent_type=mRNA" - - - -	6917	17,300,502 – 17,300,596	+	6	104	75.58	-2.83	0.56	0.996127
5037	dm3.chr2R	17,300,502 – 17,300,596		6918	17,300,502 – 17,300,596	-	6	104	75.58	-2.50	0.52	0.982548
5038	dm3.chr2R	17,301,313 – 17,301,477	- - - intron="intron;ID=intron_FBgn0010415:11_FBgn0010415:10;Name=Sdc-in;Parent=FBtr0305897;parent_type=mRNA" - - - -	6919	17,301,313 – 17,301,477	+	7	179	69.08	-1.25	0.42	0.583572
5039	dm3.chr2R	17,302,430 – 17,302,521	- - - intron="intron;ID=intron_FBgn0010415:11_FBgn0010415:10;Name=Sdc-in;Parent=FBtr0305897;parent_type=mRNA" - - - -	6920	17,302,430 – 17,302,520	-	6	91	80.83	-1.45	0.65	0.552305
5039	dm3.chr2R	17,302,430 – 17,302,521		6921	17,302,430 – 17,302,521	-	6	92	80.68	-1.40	0.65	0.518798
5040	dm3.chr2R	17,302,841 – 17,302,899	- - - intron="intron;ID=intron_FBgn0010415:11_FBgn0010415:10;Name=Sdc-in;Parent=FBtr0305897;parent_type=mRNA" - - - -	6922	17,302,841 – 17,302,899	+	5	59	77.40	-1.46	0.84	0.940549
5040	dm3.chr2R	17,302,841 – 17,302,899		6923	17,302,841 – 17,302,899	-	5	59	77.40	-1.38	0.72	0.806000
5041	dm3.chr2R	17,314,387 – 17,314,438	- - - - - - - -	6924	17,314,387 – 17,314,438	-	5	52	94.55	-1.18	1.02	0.902013
5042	dm3.chr2R	17,331,338 – 17,331,392	- - - - - - - -	6925	17,331,338 – 17,331,392	+	5	55	70.59	-1.91	0.45	0.912596
5043	dm3.chr2R	17,340,979 – 17,341,084	- - - - - - - -	6926	17,340,979 – 17,341,084	-	6	105	92.32	-2.20	0.87	0.943519
5044	dm3.chr2R	17,343,510 – 17,343,617	- - - - - - - -	6927	17,343,510 – 17,343,617	+	6	113	89.28	-2.19	0.71	0.749065
5044	dm3.chr2R	17,343,510 – 17,343,617	- - - - - - - -	6928	17,343,510 – 17,343,617	-	6	113	89.28	-2.95	0.70	0.969884
5045	dm3.chr2R	17,345,603 – 17,345,659	- - - - - - - -	6929	17,345,603 – 17,345,659	-	6	63	62.40	-1.37	0.40	0.731598
5046	dm3.chr2R	17,347,407 – 17,347,516	- - - - - - - -	6930	17,347,407 – 17,347,516	-	4	109	86.57	-2.39	0.60	0.605591
5047	dm3.chr2R	17,350,463 – 17,350,564	- - - - - - - -	6931	17,350,463 – 17,350,564	-	7	103	59.27	-1.89	0.23	0.631350
5048	dm3.chr2R	17,354,158 – 17,354,230	- - - - - - - -	6932	17,354,158 – 17,354,230	+	4	76	92.34	-1.64	0.84	0.545128
5049	dm3.chr2R	17,354,591 – 17,354,702	- - - - - - - -	6933	17,354,591 – 17,354,702	+	5	113	91.35	-1.44	0.90	0.726616
5050	dm3.chr2R	17,355,247 – 17,355,301	- - - - - - - -	6934	17,355,247 – 17,355,301	-	3	54	96.30	-2.32	1.00	0.988775
5051	dm3.chr2R	17,359,600 – 17,359,702	- - - - - - - -	6935	17,359,600 – 17,359,702	+	5	108	82.29	-2.26	0.57	0.790270
5052	dm3.chr2R	17,366,820 – 17,366,875	- - - - - - - -	6936	17,366,820 – 17,366,875	+	10	57	86.38	-0.38	1.00	0.553061
5053	dm3.chr2R	17,367,444 – 17,367,552	- - - - - - - -	6937	17,367,444 – 17,367,552	+	6	117	60.45	-2.03	0.38	0.984631
5054	dm3.chr2R	17,376,282 – 17,376,352	- - - intron="intron;ID=intron_FBgn0010470:6_FBgn0010470:5;Name=Fkbp13-in;Parent=FBtr0071703,FBtr0300397,FBtr0306013;parent_type=mRNA" - - - -	6938	17,376,282 – 17,376,352	+	5	72	92.98	-2.57	0.79	0.916497
5054	dm3.chr2R	17,376,282 – 17,376,352		6939	17,376,282 – 17,376,352	-	5	72	92.98	-2.05	0.76	0.533681
5055	dm3.chr2R	17,380,977 – 17,381,088	- - - intron="intron;ID=intron_FBgn0010470:6_FBgn0010470:5;Name=Fkbp13-in;Parent=FBtr0071703,FBtr0300397,FBtr0306013;parent_type=mRNA" - - - -	6940	17,380,977 – 17,381,088	+	6	112	66.63	-1.28	0.41	0.568365
5056	dm3.chr2R	17,392,171 – 17,392,247	- - - intron="intron;ID=intron_CG15669:1_CG15669:2;Name=MESK2-in;Parent=FBtr0089708,FBtr0089709,FBtr0089703,FBtr0089710;parent_type=mRNA" - - - -	6941	17,392,171 – 17,392,247	-	5	76	95.39	-1.95	0.90	0.875273
5057	dm3.chr2R	17,409,822 – 17,409,932	- - - - - - - -	6942	17,409,822 – 17,409,932	+	5	120	79.95	-2.00	0.55	0.529606
5058	dm3.chr2R	17,416,879 – 17,417,018	- - - intron="intron;ID=intron_CG10079:6_CG10079:2;Name=Egfr-in;Parent=FBtr0071653;parent_type=mRNA" - - - -	6943	17,416,879 – 17,417,018	+	3	168	69.11	-1.99	0.53	0.873460
5059	dm3.chr2R	17,420,975 – 17,421,048	- - - intron="intron;ID=intron_CG10079:6_CG10079:2;Name=Egfr-in;Parent=FBtr0071653;parent_type=mRNA" - - - -	6944	17,420,975 – 17,421,048	+	8	73	74.94	-1.29	0.62	0.842346
5060	dm3.chr2R	17,425,276 – 17,425,336	- - CDS="CDS;ID=CDS_FBgn0050287:4_575;Name=CG30287-cds;Parent=FBtr0071695;parent_type=mRNA" - - - - -	6945	17,425,276 – 17,425,336	+	6	60	76.00	-2.32	0.79	0.996939
5061	dm3.chr2R	17,428,071 – 17,428,202	- - - - - - - -	6946	17,428,071 – 17,428,202	-	5	142	67.78	-2.49	0.42	0.984755
5062	dm3.chr2R	17,428,581 – 17,428,669	- - - - - - - -	6947	17,428,581 – 17,428,669	+	6	97	62.57	-1.95	0.36	0.954557
5062	dm3.chr2R	17,428,581 – 17,428,669	- - - - - - - -	6948	17,428,581 – 17,428,669	-	6	97	62.57	-1.96	0.27	0.718802
5063	dm3.chr2R	17,431,822 – 17,431,878	- - - - - - - -	6949	17,431,822 – 17,431,878	+	6	65	65.51	-0.67	0.65	0.892053
5064	dm3.chr2R	17,439,281 – 17,439,398	- - - intron="intron;ID=intron_CG10079:1_CG10079:2;Name=Egfr-in;Parent=FBtr0071654;parent_type=mRNA" - - - -	6950	17,439,281 – 17,439,379	+	7	101	75.86	-0.85	0.70	0.512049
				6951	17,439,308 – 17,439,398	+	5	90	98.00	-3.65	0.97	0.997816
				6952	17,439,308 – 17,439,398	-	5	90	98.00	-1.09	0.99	0.699344
5065	dm3.chr2R	17,468,769 – 17,468,868	- - - - - - - -	6953	17,468,769 – 17,468,868	-	12	121	70.96	-1.47	0.52	0.856181
5066	dm3.chr2R	17,481,447 – 17,481,503	- - - - - - - -	6954	17,481,447 – 17,481,503	-	10	56	94.91	-1.73	0.83	0.526776
5067	dm3.chr2R	17,483,984 – 17,484,050	- - - - - - - -	6955	17,483,984 – 17,484,050	+	3	67	65.96	-2.55	0.56	0.989421
5067	dm3.chr2R	17,483,984 – 17,484,050	- - - - - - - -	6956	17,483,984 – 17,484,050	-	3	67	65.96	-0.96	0.79	0.811480
5068	dm3.chr2R	17,498,563 – 17,498,672	- - - intron="intron;ID=intron_FBgn0034639:3_FBgn0034639:2;Name=CG15673-in;Parent=FBtr0300355;parent_type=mRNA" - - - -	6957	17,498,563 – 17,498,672	+	5	113	80.45	-2.68	0.54	0.937956
5069	dm3.chr2R	17,510,346 – 17,510,449	- - CDS="CDS;ID=CDS_CG9856:1_500;Name=PTP-ER-cds;Parent=FBtr0071686;parent_type=mRNA" - - - - -	6958	17,510,346 – 17,510,449	+	10	109	63.55	-1.36	0.42	0.964115
5069	dm3.chr2R	17,510,346 – 17,510,449		6959	17,510,346 – 17,510,449	-	10	109	63.55	-1.53	0.42	0.981059
5070	dm3.chr2R	17,511,912 – 17,512,067	- - - - - - - -	6960	17,511,912 – 17,512,067	-	5	156	82.57	-1.86	0.82	0.942836
5071	dm3.chr2R	17,517,734 – 17,517,839	- - - intron="intron;ID=intron_FBgn0034641:8_FBgn0034641:9;Name=mahj-in;Parent=FBtr0071658,FBtr0304728;parent_type=mRNA" - - - -	6961	17,517,734 – 17,517,839	+	12	117	79.83	-1.67	0.62	0.838400
5072	dm3.chr2R	17,525,388 – 17,525,478	- - - - - - - -	6962	17,525,388 – 17,525,478	+	11	93	77.72	-1.95	0.63	0.974138
5073	dm3.chr2R	17,526,453 – 17,526,548	- - - - - - - -	6963	17,526,453 – 17,526,548	+	6	115	56.48	-0.54	0.43	0.516807
5074	dm3.chr2R	17,527,356 – 17,527,463	- - - - - - - -	6964	17,527,356 – 17,527,463	+	6	119	73.80	-1.26	0.53	0.500000
5075	dm3.chr2R	17,537,263 – 17,537,326	- - - intron="intron;ID=intron_CG10082:1_CG10082:2;Name=CG10082-in;Parent=FBtr0071661;parent_type=mRNA" - - - -	6965	17,537,263 – 17,537,326	-	6	71	69.67	-1.55	0.42	0.684477
5076	dm3.chr2R	17,561,183 – 17,561,297	- - - - - - - -	6966	17,561,183 – 17,561,297	-	8	119	69.46	-0.63	0.56	0.608767
5077	dm3.chr2R	17,563,226 – 17,563,317	- - - - - - - -	6967	17,563,226 – 17,563,317	+	5	96	90.62	-2.01	0.79	0.771626
5077	dm3.chr2R	17,563,226 – 17,563,317	- - - - - - - -	6968	17,563,226 – 17,563,317	-	5	96	90.62	-1.55	0.82	0.524499
5078	dm3.chr2R	17,564,093 – 17,564,189	- - CDS="CDS;ID=CDS_FBgn0050263:1_574;Name=CG30263-cds;Parent=FBtr0273308;parent_type=mRNA" - - - - -	6969	17,564,093 – 17,564,189	-	5	117	65.90	-1.56	0.49	0.896877
5079	dm3.chr2R	17,578,625 – 17,578,719	- - - - - - - -	6970	17,578,625 – 17,578,719	-	6	112	75.00	-1.82	0.50	0.668062
5080	dm3.chr2R	17,596,981 – 17,597,078	- - - - - - - -	6971	17,596,981 – 17,597,078	-	3	97	97.25	-1.97	0.93	0.898512
5081	dm3.chr2R	17,598,983 – 17,599,094	- - - - - - - -	6972	17,598,983 – 17,599,094	+	6	120	77.30	-1.81	0.47	0.500000
5081	dm3.chr2R	17,598,983 – 17,599,094	- - - - - - - -	6973	17,598,983 – 17,599,094	-	6	120	77.30	-1.96	0.54	0.850231
5082	dm3.chr2R	17,602,150 – 17,602,252	- - - intron="intron;ID=intron_FBgn0004362:2_FBgn0004362:3;Name=HmgD-in;Parent=FBtr0071709;parent_type=mRNA" - - - -	6974	17,602,150 – 17,602,252	+	9	114	69.72	-0.64	0.61	0.725488
5082	dm3.chr2R	17,602,150 – 17,602,252		6975	17,602,150 – 17,602,252	-	9	114	69.72	-1.82	0.48	0.968828
5083	dm3.chr2R	17,606,356 – 17,606,459	- - - intron="intron;ID=intron_FBgn0050404:3_FBgn0050404:1;Name=Tango11-in;Parent=FBtr0071747;parent_type=mRNA" - - - -	6976	17,606,356 – 17,606,459	+	4	119	77.73	-1.61	0.79	0.887221
5084	dm3.chr2R	17,609,032 – 17,609,173	- - - intron="intron;ID=intron_CG17952:4_CG17952:2;Name=LBR-in;Parent=FBtr0071711,FBtr0071712;parent_type=mRNA" - - - -	6977	17,609,032 – 17,609,133	+	6	108	68.14	-1.75	0.52	0.979498
5084	dm3.chr2R	17,609,032 – 17,609,173		6978	17,609,067 – 17,609,173	+	5	112	79.98	-1.20	0.84	0.803753
5085	dm3.chr2R	17,618,471 – 17,618,582	- - - - - - - -	6979	17,618,471 – 17,618,582	+	11	132	69.37	-1.30	0.48	0.889741
5086	dm3.chr2R	17,638,848 – 17,638,906	- - - - - - - -	6980	17,638,848 – 17,638,906	+	8	58	93.01	-1.71	0.81	0.526949
5087	dm3.chr2R	17,659,551 – 17,659,660	- - - - - - - -	6981	17,659,551 – 17,659,660	+	8	115	70.45	-1.73	0.37	0.682012
5087	dm3.chr2R	17,659,551 – 17,659,660	- - - - - - - -	6982	17,659,551 – 17,659,660	-	8	115	70.45	-1.47	0.43	0.733964
5088	dm3.chr2R	17,669,856 – 17,669,947	- - - - - - - -	6983	17,669,856 – 17,669,947	-	4	97	52.94	-2.62	0.35	0.997583
5089	dm3.chr2R	17,675,755 – 17,675,855	- - - - - - - -	6984	17,675,755 – 17,675,855	-	11	112	88.08	-2.34	0.62	0.716919
5090	dm3.chr2R	17,681,396 – 17,681,496	- - - - - - - -	6985	17,681,396 – 17,681,496	+	7	112	76.22	-1.48	0.57	0.590016
5091	dm3.chr2R	17,683,146 – 17,683,236	- - - - - - - -	6986	17,683,146 – 17,683,236	-	11	107	59.63	-1.60	0.27	0.616716
5092	dm3.chr2R	17,685,039 – 17,685,135	- - - - - - - -	6987	17,685,039 – 17,685,135	-	5	108	88.76	-2.08	0.70	0.571931
5093	dm3.chr2R	17,688,901 – 17,688,959	- - - - - - - -	6988	17,688,901 – 17,688,959	-	8	62	83.66	-1.01	0.93	0.830807
5094	dm3.chr2R	17,733,370 – 17,733,496	- - - - - - - -	6989	17,733,370 – 17,733,460	+	6	95	69.20	-1.20	0.46	0.533943
				6990	17,733,370 – 17,733,460	-	6	95	69.20	-1.69	0.39	0.656969
				6991	17,733,405 – 17,733,496	+	7	114	65.07	-1.25	0.39	0.564911
5095	dm3.chr2R	17,735,889 – 17,736,037	FBnoncoding="tRNA;ID=FBtr0071736;Name=tRNA:CR30406-RA;Parent=FBgn0050406;Alias=CR30406-RA;Dbxref=FlyBase_Annotation_IDs:CR30406-RA;score_text=Weakly" tRNAscann="Gly_chr2R_trna54" - - "Rfam_10.0=RF00005;tRNA;ABJB010436523.1/406-477\|6.2e-22" - - -	6992	17,735,889 – 17,736,037	+	13	173	71.18	-1.77	0.75	0.996787
5095	dm3.chr2R	17,735,889 – 17,736,037		6993	17,735,889 – 17,736,037	-	13	173	71.18	-0.78	0.70	0.922436
5096	dm3.chr2R	17,741,650 – 17,741,700	- - - - - - - -	6994	17,741,650 – 17,741,700	-	3	50	100.00	-0.99	1.00	0.625424
5097	dm3.chr2R	17,744,881 – 17,744,987	- - - - - - - -	6995	17,744,881 – 17,744,987	+	6	107	69.41	-0.53	0.62	0.535273
5098	dm3.chr2R	17,757,956 – 17,758,046	- - - - - - - -	6996	17,757,956 – 17,758,046	+	11	101	55.50	-0.64	0.38	0.745024
5099	dm3.chr2R	17,758,096 – 17,758,190	- - - - - - - -	6997	17,758,096 – 17,758,190	+	11	115	69.18	-1.34	0.78	0.989477
5100	dm3.chr2R	17,758,633 – 17,758,729	- - - - - - - -	6998	17,758,633 – 17,758,729	-	8	112	78.98	-2.06	0.46	0.550555
5101	dm3.chr2R	17,764,616 – 17,764,714	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	6999	17,764,616 – 17,764,714	+	8	116	75.67	-1.79	0.62	0.949229
5102	dm3.chr2R	17,766,876 – 17,766,986	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7000	17,766,876 – 17,766,986	+	6	114	80.84	-1.78	0.73	0.929751
5103	dm3.chr2R	17,775,625 – 17,775,727	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7001	17,775,625 – 17,775,724	-	8	102	65.64	-0.89	0.53	0.940981
5103	dm3.chr2R	17,775,625 – 17,775,727		7002	17,775,628 – 17,775,727	-	8	102	64.50	-1.34	0.47	0.979357
5104	dm3.chr2R	17,780,524 – 17,780,650	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7003	17,780,524 – 17,780,627	-	6	114	78.75	-1.28	0.65	0.500000
5104	dm3.chr2R	17,780,524 – 17,780,650		7004	17,780,540 – 17,780,650	-	5	110	92.73	-1.19	0.91	0.523515
5105	dm3.chr2R	17,782,708 – 17,782,806	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7005	17,782,708 – 17,782,806	-	10	106	69.94	-1.00	0.46	0.533221
5106	dm3.chr2R	17,785,255 – 17,785,326	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7006	17,785,255 – 17,785,326	-	7	72	74.95	-1.29	0.66	0.837785
5107	dm3.chr2R	17,786,895 – 17,786,989	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7007	17,786,895 – 17,786,989	+	12	119	68.30	-0.95	0.64	0.961361
5108	dm3.chr2R	17,787,820 – 17,787,952	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7008	17,787,820 – 17,787,952	-	11	152	65.73	-1.88	0.37	0.953846
5109	dm3.chr2R	17,788,862 – 17,788,952	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7009	17,788,862 – 17,788,952	-	4	90	93.70	-2.08	0.93	0.952505
5110	dm3.chr2R	17,792,813 – 17,792,874	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7010	17,792,813 – 17,792,874	-	6	61	77.38	-1.31	0.56	0.500000
5111	dm3.chr2R	17,805,927 – 17,805,983	- - - intron="intron;ID=intron_FBgn0085397:1_FBgn0085397:2;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7011	17,805,927 – 17,805,983	+	5	56	93.39	-1.48	0.95	0.856419
5112	dm3.chr2R	17,824,993 – 17,825,095	- - - intron="intron;ID=intron_FBgn0085397:4_FBgn0085397:5;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7012	17,824,993 – 17,825,095	-	7	104	77.70	-1.16	0.61	0.580405
5113	dm3.chr2R	17,829,782 – 17,829,879	- - - intron="intron;ID=intron_FBgn0085397:4_FBgn0085397:5;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7013	17,829,782 – 17,829,879	+	7	111	76.71	-1.67	0.54	0.768365
5113	dm3.chr2R	17,829,782 – 17,829,879		7014	17,829,782 – 17,829,879	-	7	111	76.71	-1.87	0.51	0.816994
5114	dm3.chr2R	17,830,070 – 17,830,201	- - - intron="intron;ID=intron_FBgn0085397:4_FBgn0085397:5;Name=Fili-in;Parent=FBtr0112593;parent_type=mRNA" - - - -	7015	17,830,070 – 17,830,179	+	6	117	78.81	-2.05	0.64	0.947618
5114	dm3.chr2R	17,830,070 – 17,830,201		7016	17,830,103 – 17,830,201	+	8	122	80.03	-1.88	0.62	0.793215
5115	dm3.chr2R	17,836,507 – 17,836,560	- - - - - - - -	7017	17,836,507 – 17,836,560	-	3	53	94.34	-1.10	1.00	0.809161
5116	dm3.chr2R	17,848,361 – 17,848,467	- - - - - - - -	7018	17,848,361 – 17,848,467	+	5	116	73.76	-1.95	0.46	0.680134
5116	dm3.chr2R	17,848,361 – 17,848,467	- - - - - - - -	7019	17,848,361 – 17,848,467	-	5	116	73.76	-1.37	0.57	0.569328
5117	dm3.chr2R	17,852,779 – 17,852,878	- - - intron="intron;ID=intron_FBgn0085398:1_FBgn0085398:2;Name=CG34369-in;Parent=FBtr0112594;parent_type=mRNA" - - - -	7020	17,852,779 – 17,852,878	-	6	103	71.86	-1.84	0.63	0.986975
5118	dm3.chr2R	17,856,726 – 17,856,867	- - - intron="intron;ID=intron_FBgn0085398:6_FBgn0085398:7;Name=CG34369-in;Parent=FBtr0112594;parent_type=mRNA" - - - -	7021	17,856,726 – 17,856,833	-	5	111	90.74	-2.08	0.81	0.841312
				7022	17,856,763 – 17,856,867	+	6	106	82.77	-3.04	0.53	0.980384
				7023	17,856,763 – 17,856,867	-	6	106	82.77	-2.39	0.69	0.973852
5119	dm3.chr2R	17,869,872 – 17,869,966	- - - - - - - -	7024	17,869,872 – 17,869,966	+	6	103	79.52	-1.05	0.72	0.518202
5119	dm3.chr2R	17,869,872 – 17,869,966	- - - - - - - -	7025	17,869,872 – 17,869,966	-	6	103	79.52	-1.82	0.63	0.861369
5120	dm3.chr2R	17,870,044 – 17,870,146	- - - - - - - -	7026	17,870,044 – 17,870,146	-	6	110	83.26	-1.49	0.74	0.660210
5121	dm3.chr2R	17,873,065 – 17,873,168	- - - - - - - -	7027	17,873,065 – 17,873,168	+	6	116	61.40	-1.06	0.48	0.909900
5122	dm3.chr2R	17,889,231 – 17,889,324	- - - intron="intron;ID=intron_FBgn0085399:6_FBgn0085399:5;Name=CG34370-in;Parent=FBtr0299544;parent_type=mRNA" - - - -	7028	17,889,231 – 17,889,324	+	7	93	75.49	-1.29	0.59	0.770746
5123	dm3.chr2R	17,891,060 – 17,891,154	- - - intron="intron;ID=intron_FBgn0085399:6_FBgn0085399:5;Name=CG34370-in;Parent=FBtr0299544;parent_type=mRNA" - - - -	7029	17,891,060 – 17,891,154	-	10	95	77.87	-1.46	0.59	0.856269
5124	dm3.chr2R	17,907,859 – 17,907,972	- - - intron="intron;ID=intron_FBgn0085399:8_FBgn0085399:7;Name=CG34370-in;Parent=FBtr0299544;parent_type=mRNA" - - - -	7030	17,907,859 – 17,907,972	+	7	115	74.07	-1.29	0.47	0.559251
5125	dm3.chr2R	17,911,793 – 17,911,919	- - - intron="intron;ID=intron_FBgn0085399:8_FBgn0085399:7;Name=CG34370-in;Parent=FBtr0299544;parent_type=mRNA" - - - -	7031	17,911,793 – 17,911,919	-	5	150	79.51	-1.85	0.62	0.678594
5126	dm3.chr2R	17,916,008 – 17,916,115	- - - intron="intron;ID=intron_FBgn0085399:8_FBgn0085399:7;Name=CG34370-in;Parent=FBtr0299544;parent_type=mRNA" - - - -	7032	17,916,008 – 17,916,115	+	9	116	79.68	-1.97	0.50	0.578442
5126	dm3.chr2R	17,916,008 – 17,916,115		7033	17,916,008 – 17,916,115	-	9	116	79.68	-1.98	0.51	0.626592
5127	dm3.chr2R	17,917,536 – 17,917,647	- - - intron="intron;ID=intron_FBgn0085399:8_FBgn0085399:7;Name=CG34370-in;Parent=FBtr0299544;parent_type=mRNA" - - - -	7034	17,917,536 – 17,917,647	-	9	114	67.46	-1.53	0.69	0.994747
5128	dm3.chr2R	17,921,181 – 17,921,323	- - - intron="intron;ID=intron_FBgn0085399:8_FBgn0085399:7;Name=CG34370-in;Parent=FBtr0299544;parent_type=mRNA" - - - -	7035	17,921,181 – 17,921,289	+	9	111	83.82	-2.45	0.61	0.951773
				7036	17,921,181 – 17,921,289	-	9	111	83.82	-1.88	0.64	0.795600
				7037	17,921,221 – 17,921,323	+	8	113	66.42	-1.03	0.45	0.596807
				7038	17,921,221 – 17,921,323	-	8	113	66.42	-1.51	0.38	0.693641
5129	dm3.chr2R	17,921,588 – 17,921,638	- - - intron="intron;ID=intron_FBgn0085399:8_FBgn0085399:7;Name=CG34370-in;Parent=FBtr0299544;parent_type=mRNA" - - - -	7039	17,921,588 – 17,921,638	+	5	50	92.40	-1.34	0.99	0.907743
5130	dm3.chr2R	17,928,930 – 17,929,023	- - - - - - - -	7040	17,928,930 – 17,929,023	+	8	113	70.45	-2.38	0.37	0.922882
5131	dm3.chr2R	17,932,098 – 17,932,206	- - - - - - - -	7041	17,932,098 – 17,932,206	+	11	116	80.42	-2.27	0.62	0.967829
5132	dm3.chr2R	17,934,921 – 17,934,998	- - - - - - - -	7042	17,934,921 – 17,934,998	-	9	81	91.16	-1.92	0.74	0.593815
5133	dm3.chr2R	17,945,945 – 17,946,014	- - - - - - - -	7043	17,945,945 – 17,946,014	-	12	81	79.12	-1.89	0.56	0.865524
5134	dm3.chr2R	17,966,995 – 17,967,109	- - - - - - - -	7044	17,966,995 – 17,967,109	-	6	137	78.15	-2.52	0.45	0.830149
5135	dm3.chr2R	17,967,901 – 17,967,998	- - - intron="intron;ID=intron_CG6562:5_CG6562:2;Name=synj-in;Parent=FBtr0071756;parent_type=mRNA" - - - -	7045	17,967,901 – 17,967,998	+	3	108	77.64	-2.15	0.70	0.917379
5135	dm3.chr2R	17,967,901 – 17,967,998		7046	17,967,901 – 17,967,998	-	3	108	77.64	-2.78	0.80	0.994229
5136	dm3.chr2R	17,968,176 – 17,968,267	- - - intron="intron;ID=intron_CG6562:1_CG6562:2;Name=synj-in;Parent=FBtr0071757;parent_type=mRNA" - - - -	7047	17,968,176 – 17,968,267	+	3	120	66.76	-2.23	0.40	0.693826
5137	dm3.chr2R	17,974,969 – 17,975,030	- - - intron="intron;ID=intron_FBgn0034692:5_FBgn0034692:3;Name=CG13502-in;Parent=FBtr0113103;parent_type=mRNA" - - - -	7048	17,974,969 – 17,975,030	+	6	66	79.79	-1.11	0.73	0.546667
5138	dm3.chr2R	17,999,997 – 18,000,090	- - CDS="CDS;ID=CDS_FBgn0243516:10_637;Name=Vrp1-cds;Parent=FBtr0302298;parent_type=mRNA" - - - - -	7049	17,999,997 – 18,000,090	-	6	105	83.67	-1.78	0.74	0.808675
5139	dm3.chr2R	18,030,678 – 18,030,771	- - - - - - - -	7050	18,030,678 – 18,030,771	-	6	101	71.92	-2.29	0.63	0.996384
5140	dm3.chr2R	18,045,009 – 18,045,127	- - - intron="intron;ID=intron_FBgn0000008:5_FBgn0000008:6;Name=a-in;Parent=FBtr0071764,FBtr0100521,FBtr0071763;parent_type=mRNA" - - - -	7051	18,045,009 – 18,045,104	+	8	100	92.53	-2.72	0.85	0.982227
5140	dm3.chr2R	18,045,009 – 18,045,127		7052	18,045,030 – 18,045,127	+	10	108	82.84	-2.24	0.71	0.965840
5141	dm3.chr2R	18,055,069 – 18,055,166	- - - intron="intron;ID=intron_FBgn0000008:7_FBgn0000008:8;Name=a-in;Parent=FBtr0071764,FBtr0100521,FBtr0071763;parent_type=mRNA" - - - -	7053	18,055,069 – 18,055,166	-	10	112	70.75	-0.59	0.56	0.510438
5142	dm3.chr2R	18,057,842 – 18,057,953	- - CDS="CDS;ID=CDS_FBgn0000008:8_526;Name=a-cds;Parent=FBtr0071764,FBtr0071763;parent_type=mRNA" - - - - -	7054	18,057,842 – 18,057,953	-	13	118	79.56	-2.43	0.45	0.950871
5143	dm3.chr2R	18,058,652 – 18,058,747	- - CDS="CDS;ID=CDS_FBgn0000008:9_526;Name=a-cds;Parent=FBtr0071764,FBtr0071763;parent_type=mRNA" - - - - -	7055	18,058,652 – 18,058,747	-	11	96	80.90	-2.01	0.47	0.641399
5144	dm3.chr2R	18,066,905 – 18,066,998	- - CDS="CDS;ID=CDS_CG30279:1_509;Name=CG30279-cds;Parent=FBtr0071768;parent_type=mRNA" intron="intron;ID=intron_FBgn0034705:2_FBgn0034705:1;Name=CG11170-in;Parent=FBtr0071786;parent_type=mRNA" - - - -	7056	18,066,905 – 18,066,998	+	6	116	71.09	-1.30	0.42	0.517971
5145	dm3.chr2R	18,073,092 – 18,073,229	- - - - - - - -	7057	18,073,092 – 18,073,198	+	12	112	68.60	-0.81	0.43	0.594709
5145	dm3.chr2R	18,073,092 – 18,073,229	- - - - - - - -	7058	18,073,124 – 18,073,229	+	10	119	63.49	-0.69	0.50	0.799611
5146	dm3.chr2R	18,086,585 – 18,086,637	- - - - - - - -	7059	18,086,585 – 18,086,637	+	9	52	90.92	-1.99	0.92	0.965579
5147	dm3.chr2R	18,118,466 – 18,118,519	- - - - - - - -	7060	18,118,466 – 18,118,519	-	11	61	82.19	-1.89	0.62	0.825659
5148	dm3.chr2R	18,126,670 – 18,126,776	- - - - - - - -	7061	18,126,670 – 18,126,776	+	11	108	67.46	-1.83	0.26	0.691688
5149	dm3.chr2R	18,130,728 – 18,130,836	- - - - - - - -	7062	18,130,728 – 18,130,836	-	12	119	65.19	-2.32	0.19	0.758640
5150	dm3.chr2R	18,132,910 – 18,133,012	- - - intron="intron;ID=intron_CG5799:1_CG5799:2;Name=dve-in;Parent=FBtr0071775;parent_type=mRNA" - - - -	7063	18,132,910 – 18,133,012	+	12	119	75.15	-1.48	0.51	0.809847
5151	dm3.chr2R	18,138,721 – 18,138,817	- - - intron="intron;ID=intron_CG5799:1_CG5799:2;Name=dve-in;Parent=FBtr0071775;parent_type=mRNA" - - - -	7064	18,138,721 – 18,138,817	+	8	113	74.30	-2.54	0.35	0.805406
5152	dm3.chr2R	18,142,803 – 18,142,900	- - - intron="intron;ID=intron_CG5799:1_CG5799:2;Name=dve-in;Parent=FBtr0071775;parent_type=mRNA" - - - -	7065	18,142,803 – 18,142,900	-	12	115	86.81	-2.37	0.85	0.984873
5153	dm3.chr2R	18,148,473 – 18,148,567	- - - intron="intron;ID=intron_CG5799:1_CG5799:2;Name=dve-in;Parent=FBtr0071775;parent_type=mRNA" - - - -	7066	18,148,473 – 18,148,567	+	10	107	84.07	-2.11	0.52	0.500000
5153	dm3.chr2R	18,148,473 – 18,148,567		7067	18,148,473 – 18,148,567	-	10	107	84.07	-3.04	0.52	0.968640
5154	dm3.chr2R	18,155,951 – 18,156,073	- - - intron="intron;ID=intron_CG5799:2_CG5799:3;Name=dve-in;Parent=FBtr0071775;parent_type=mRNA" - - - -	7068	18,155,951 – 18,156,046	+	8	117	73.31	-2.37	0.36	0.723099
5154	dm3.chr2R	18,155,951 – 18,156,073		7069	18,155,974 – 18,156,073	+	8	106	74.47	-1.49	0.50	0.653807
5155	dm3.chr2R	18,158,015 – 18,158,114	- - - intron="intron;ID=intron_CG5799:2_CG5799:3;Name=dve-in;Parent=FBtr0071775;parent_type=mRNA" - - - -	7070	18,158,015 – 18,158,114	+	8	117	85.35	-2.23	0.68	0.851724
5156	dm3.chr2R	18,181,293 – 18,181,352	- - - intron="intron;ID=intron_CG5819:5_CG5819:6;Name=CG5819-in;Parent=FBtr0071811;parent_type=mRNA" - - - -	7071	18,181,293 – 18,181,352	-	8	60	60.49	-0.58	0.40	0.537656
5157	dm3.chr2R	18,196,253 – 18,196,344	- - - intron="intron;ID=intron_CG3413:1_CG3413:2;Name=wdp-in;Parent=FBtr0071852;parent_type=mRNA" - - - -	7072	18,196,253 – 18,196,344	+	9	110	77.34	-2.33	0.41	0.823355
5157	dm3.chr2R	18,196,253 – 18,196,344		7073	18,196,253 – 18,196,344	-	9	110	77.34	-2.86	0.61	0.997550
5158	dm3.chr2R	18,216,320 – 18,216,446	- - - - - - - -	7074	18,216,320 – 18,216,414	-	9	114	59.58	-0.74	0.40	0.569955
5158	dm3.chr2R	18,216,320 – 18,216,446	- - - - - - - -	7075	18,216,350 – 18,216,446	+	9	106	65.80	-0.80	0.62	0.960470
5159	dm3.chr2R	18,235,134 – 18,235,237	- - - intron="intron;ID=intron_FBgn0034720:16_FBgn0034720:14;Name=Liprin-gamma-in;Parent=FBtr0071846;parent_type=mRNA" - - - -	7076	18,235,134 – 18,235,237	+	4	111	75.53	-2.22	0.64	0.969691
5160	dm3.chr2R	18,235,495 – 18,235,590	- - - intron="intron;ID=intron_FBgn0034720:16_FBgn0034720:14;Name=Liprin-gamma-in;Parent=FBtr0071846;parent_type=mRNA" - - - -	7077	18,235,495 – 18,235,590	-	6	106	74.04	-3.10	0.27	0.864220
5161	dm3.chr2R	18,243,741 – 18,243,846	- - - intron="intron;ID=intron_FBgn0034720:16_FBgn0034720:14;Name=Liprin-gamma-in;Parent=FBtr0071846;parent_type=mRNA" - - - -	7078	18,243,741 – 18,243,846	-	5	115	71.29	-1.13	0.56	0.624274
5162	dm3.chr2R	18,248,875 – 18,248,985	- - - intron="intron;ID=intron_FBgn0034720:17_FBgn0034720:16;Name=Liprin-gamma-in;Parent=FBtr0071846,FBtr0113107;parent_type=mRNA" - - - -	7079	18,248,875 – 18,248,985	-	5	114	90.95	-1.62	0.89	0.810828
5163	dm3.chr2R	18,250,178 – 18,250,289	- - - intron="intron;ID=intron_FBgn0034720:17_FBgn0034720:16;Name=Liprin-gamma-in;Parent=FBtr0071846,FBtr0113107;parent_type=mRNA" - - - -	7080	18,250,178 – 18,250,289	+	5	111	72.61	-2.53	0.57	0.995667
5163	dm3.chr2R	18,250,178 – 18,250,289		7081	18,250,178 – 18,250,289	-	5	111	72.61	-1.29	0.56	0.730174
5164	dm3.chr2R	18,251,874 – 18,251,965	- - - intron="intron;ID=intron_FBgn0034720:17_FBgn0034720:16;Name=Liprin-gamma-in;Parent=FBtr0071846,FBtr0113107;parent_type=mRNA" - - - -	7082	18,251,874 – 18,251,965	-	8	104	72.83	-1.60	0.62	0.975747
5165	dm3.chr2R	18,255,768 – 18,255,925	- - - intron="intron;ID=intron_FBgn0034720:17_FBgn0034720:16;Name=Liprin-gamma-in;Parent=FBtr0071846,FBtr0113107;parent_type=mRNA" - - - -	7083	18,255,768 – 18,255,925	+	6	168	86.10	-2.19	0.71	0.886523
5165	dm3.chr2R	18,255,768 – 18,255,925		7084	18,255,768 – 18,255,925	-	6	168	86.10	-1.96	0.79	0.908123
5166	dm3.chr2R	18,259,450 – 18,259,571	- - - intron="intron;ID=intron_FBgn0034720:17_FBgn0034720:16;Name=Liprin-gamma-in;Parent=FBtr0071846,FBtr0113107;parent_type=mRNA" - - - -	7085	18,259,450 – 18,259,548	+	7	110	75.34	-2.27	0.49	0.956626
				7086	18,259,450 – 18,259,548	-	7	110	75.34	-1.73	0.54	0.871291
				7087	18,259,480 – 18,259,571	-	6	92	93.21	-2.22	0.84	0.903556
5167	dm3.chr2R	18,261,420 – 18,261,483	- - - - - - - -	7088	18,261,420 – 18,261,483	-	10	69	75.47	-0.73	0.64	0.526036
5168	dm3.chr2R	18,261,945 – 18,262,031	- - - - - - - -	7089	18,261,945 – 18,262,031	+	8	99	74.10	-0.94	0.69	0.814071
5169	dm3.chr2R	18,272,107 – 18,272,200	- - - intron="intron;ID=intron_CG13506:1_CG13506:2;Name=CG13506-in;Parent=FBtr0071822;parent_type=mRNA" - - - -	7090	18,272,107 – 18,272,200	-	6	99	65.37	-1.54	0.49	0.968688
5170	dm3.chr2R	18,278,917 – 18,279,081	- - CDS="CDS;ID=CDS_CG13506:4_517;Name=CG13506-cds;Parent=FBtr0071822;parent_type=mRNA" - - - - -	7091	18,278,917 – 18,279,035	+	12	120	84.05	-2.10	0.66	0.929208
				7092	18,278,917 – 18,279,035	-	12	120	84.05	-2.41	0.67	0.975669
				7093	18,278,957 – 18,279,075	+	12	120	87.18	-1.89	0.78	0.903466
				7094	18,278,957 – 18,279,075	-	12	120	87.18	-2.63	0.74	0.983504
				7095	18,278,962 – 18,279,081	+	12	120	86.31	-1.40	0.80	0.749588
				7096	18,278,962 – 18,279,081	-	12	120	86.31	-1.62	0.70	0.635302
5171	dm3.chr2R	18,292,415 – 18,292,537	- - - intron="intron;ID=intron_FBgn0034725:2_FBgn0034725:5;Name=CG6044-in;Parent=FBtr0301188;parent_type=mRNA" - - - -	7097	18,292,415 – 18,292,531	+	5	120	72.21	-1.70	0.59	0.938099
5171	dm3.chr2R	18,292,415 – 18,292,537		7098	18,292,418 – 18,292,537	+	5	120	71.14	-1.80	0.60	0.971228
5172	dm3.chr2R	18,294,443 – 18,294,522	- - - intron="intron;ID=intron_FBgn0034725:3_FBgn0034725:6;Name=CG6044-in;Parent=FBtr0301242;parent_type=mRNA" - - - -	7099	18,294,443 – 18,294,522	+	5	79	86.02	-2.40	0.60	0.715588
5173	dm3.chr2R	18,309,725 – 18,309,842	- - CDS="CDS;ID=CDS_FBgn0034728:3_680;Name=rad50-cds;Parent=FBtr0305323;parent_type=mRNA" - - - - -	7100	18,309,725 – 18,309,842	+	7	117	70.53	-1.49	0.38	0.567653
5174	dm3.chr2R	18,319,560 – 18,319,685	- - - - - - - -	7101	18,319,560 – 18,319,664	-	8	114	67.40	-1.41	0.43	0.819596
5174	dm3.chr2R	18,319,560 – 18,319,685	- - - - - - - -	7102	18,319,588 – 18,319,685	-	8	110	61.24	-1.54	0.41	0.965341
5175	dm3.chr2R	18,325,344 – 18,325,462	- - - - - - - -	7103	18,325,344 – 18,325,462	+	12	121	77.91	-1.69	0.64	0.955228
5175	dm3.chr2R	18,325,344 – 18,325,462	- - - - - - - -	7104	18,325,344 – 18,325,462	-	12	121	77.91	-1.38	0.56	0.716626
5176	dm3.chr2R	18,331,366 – 18,331,470	- - - - - - - -	7105	18,331,366 – 18,331,465	-	3	99	89.56	-2.43	0.91	0.982040
5176	dm3.chr2R	18,331,366 – 18,331,470	- - - - - - - -	7106	18,331,371 – 18,331,470	-	3	99	89.56	-1.79	0.90	0.888392
5177	dm3.chr2R	18,333,389 – 18,333,485	- - - - - - - -	7107	18,333,389 – 18,333,485	+	7	109	76.26	-1.39	0.56	0.527774
5178	dm3.chr2R	18,343,970 – 18,344,063	- - - - - - - -	7108	18,343,970 – 18,344,063	-	6	117	81.81	-2.71	0.42	0.635606
5179	dm3.chr2R	18,355,011 – 18,355,070	- - - intron="intron;ID=intron_FBgn0034731:2_FBgn0034731:3;Name=CG10384-in;Parent=FBtr0300682,FBtr0300683;parent_type=mRNA" - - - -	7109	18,355,011 – 18,355,070	-	7	62	72.71	-1.43	0.63	0.957246
5180	dm3.chr2R	18,356,412 – 18,356,521	- - - intron="intron;ID=intron_FBgn0034731:2_FBgn0034731:3;Name=CG10384-in;Parent=FBtr0300682,FBtr0300683;parent_type=mRNA" - - - -	7110	18,356,412 – 18,356,521	+	3	109	85.85	-2.33	0.79	0.929088
5181	dm3.chr2R	18,357,597 – 18,357,693	- - - - - - - -	7111	18,357,597 – 18,357,693	+	8	111	61.34	-0.59	0.41	0.521246
5182	dm3.chr2R	18,361,502 – 18,361,612	- - - - - - - -	7112	18,361,502 – 18,361,612	-	11	117	54.95	-1.81	0.21	0.859713
5183	dm3.chr2R	18,364,914 – 18,365,018	- - - - - - - -	7113	18,364,914 – 18,365,018	-	5	117	71.94	-1.38	0.53	0.688485
5184	dm3.chr2R	18,378,819 – 18,378,933	- - CDS="CDS;ID=CDS_CG4554:5_524;Name=CG4554-cds;Parent=FBtr0071833;parent_type=mRNA" - - - - -	7114	18,378,819 – 18,378,933	+	12	121	69.52	-1.67	0.33	0.763554
5185	dm3.chr2R	18,382,004 – 18,382,078	- - - - - - - -	7115	18,382,004 – 18,382,078	-	6	80	73.12	-2.70	0.40	0.979789
5186	dm3.chr2R	18,393,880 – 18,393,975	- - - intron="intron;ID=intron_FBgn0003175:3_FBgn0003175:2;Name=px-in;Parent=FBtr0071838,FBtr0112820;parent_type=mRNA" - - - -	7116	18,393,880 – 18,393,975	+	6	114	74.09	-1.57	0.55	0.753616
5187	dm3.chr2R	18,396,566 – 18,396,656	- - - intron="intron;ID=intron_FBgn0003175:3_FBgn0003175:2;Name=px-in;Parent=FBtr0071838,FBtr0112820;parent_type=mRNA" - - - -	7117	18,396,566 – 18,396,656	-	6	99	75.57	-1.92	0.54	0.904727
5188	dm3.chr2R	18,399,785 – 18,399,899	- - - intron="intron;ID=intron_FBgn0003175:3_FBgn0003175:2;Name=px-in;Parent=FBtr0071838,FBtr0112820;parent_type=mRNA" - - - -	7118	18,399,785 – 18,399,899	-	5	115	57.66	-0.46	0.59	0.942922
5189	dm3.chr2R	18,403,184 – 18,403,286	- - - intron="intron;ID=intron_FBgn0003175:3_FBgn0003175:2;Name=px-in;Parent=FBtr0071838,FBtr0112820;parent_type=mRNA" - - - -	7119	18,403,184 – 18,403,286	+	7	107	72.98	-0.96	0.56	0.647405
5190	dm3.chr2R	18,405,155 – 18,405,245	- - - intron="intron;ID=intron_FBgn0003175:3_FBgn0003175:2;Name=px-in;Parent=FBtr0071838,FBtr0112820;parent_type=mRNA" - - - -	7120	18,405,155 – 18,405,245	+	8	103	82.83	-1.47	0.68	0.579137
5191	dm3.chr2R	18,412,609 – 18,412,705	- - - intron="intron;ID=intron_FBgn0003175:3_FBgn0003175:2;Name=px-in;Parent=FBtr0071838,FBtr0112820;parent_type=mRNA" - - - -	7121	18,412,609 – 18,412,705	-	8	119	88.16	-2.39	0.69	0.841445
5192	dm3.chr2R	18,414,489 – 18,414,599	- - - intron="intron;ID=intron_FBgn0003175:3_FBgn0003175:2;Name=px-in;Parent=FBtr0071838,FBtr0112820;parent_type=mRNA" - - - -	7122	18,414,489 – 18,414,599	-	3	112	50.75	-2.56	0.24	0.947140
5193	dm3.chr2R	18,431,756 – 18,431,859	- - - intron="intron;ID=intron_FBgn0003175:15_FBgn0003175:14;Name=px-in;Parent=FBtr0112821;parent_type=mRNA" - - - -	7123	18,431,756 – 18,431,859	+	5	114	75.00	-1.49	0.54	0.515790
5194	dm3.chr2R	18,444,131 – 18,444,221	- - CDS="CDS;ID=CDS_FBgn0003175:16_499;Name=px-cds;Parent=FBtr0071838;parent_type=mRNA" - - - - -	7124	18,444,131 – 18,444,221	+	6	90	74.15	-0.85	0.80	0.873071
5194	dm3.chr2R	18,444,131 – 18,444,221		7125	18,444,131 – 18,444,221	-	6	90	74.15	-1.19	0.54	0.583656
5195	dm3.chr2R	18,457,197 – 18,457,250	- - - intron="intron;ID=intron_CG12489:1_CG12489:2;Name=dnr1-in;Parent=FBtr0071837;parent_type=mRNA" - - - -	7126	18,457,197 – 18,457,250	+	6	59	63.06	-2.32	0.25	0.686522
5195	dm3.chr2R	18,457,197 – 18,457,250		7127	18,457,197 – 18,457,250	-	6	59	63.06	-1.51	0.39	0.720677
5196	dm3.chr2R	18,462,168 – 18,462,295	- - - intron="intron;ID=intron_CG12489:1_CG12489:2;Name=dnr1-in;Parent=FBtr0071837;parent_type=mRNA" - - - -	7128	18,462,168 – 18,462,268	+	4	100	57.35	-1.17	0.51	0.943434
				7129	18,462,168 – 18,462,268	-	4	100	57.35	-1.38	0.38	0.749697
				7130	18,462,204 – 18,462,295	-	5	93	75.43	-2.29	0.58	0.967724
5197	dm3.chr2R	18,462,830 – 18,462,894	- - - intron="intron;ID=intron_CG12489:1_CG12489:2;Name=dnr1-in;Parent=FBtr0071837;parent_type=mRNA" - - - -	7131	18,462,830 – 18,462,894	+	8	65	75.39	-1.06	0.54	0.513125
5198	dm3.chr2R	18,465,171 – 18,465,271	- - - intron="intron;ID=intron_CG12489:1_CG12489:2;Name=dnr1-in;Parent=FBtr0071837;parent_type=mRNA" - - - -	7132	18,465,171 – 18,465,271	+	3	108	79.43	-2.22	0.67	0.877030
5199	dm3.chr2R	18,474,743 – 18,474,793	- - - intron="intron;ID=intron_CG12489:1_CG12489:2;Name=dnr1-in;Parent=FBtr0071837;parent_type=mRNA" - - - -	7133	18,474,743 – 18,474,793	+	5	53	85.74	-1.79	0.71	0.592994
5199	dm3.chr2R	18,474,743 – 18,474,793		7134	18,474,743 – 18,474,793	-	5	53	85.74	-1.68	0.73	0.565479
5200	dm3.chr2R	18,476,367 – 18,476,476	- - - intron="intron;ID=intron_CG12489:1_CG12489:2;Name=dnr1-in;Parent=FBtr0071837;parent_type=mRNA" - - - -	7135	18,476,367 – 18,476,476	+	6	115	93.96	-1.67	0.85	0.598185
5201	dm3.chr2R	18,479,126 – 18,479,232	- - - intron="intron;ID=intron_CG12489:1_CG12489:2;Name=dnr1-in;Parent=FBtr0071837;parent_type=mRNA" - - - -	7136	18,479,126 – 18,479,226	+	5	112	67.64	-2.14	0.49	0.978207
				7137	18,479,126 – 18,479,226	-	5	112	67.64	-1.32	0.57	0.883584
				7138	18,479,132 – 18,479,232	+	5	115	67.66	-2.26	0.47	0.970362
				7139	18,479,132 – 18,479,232	-	5	115	67.66	-2.04	0.53	0.974241
5202	dm3.chr2R	18,481,547 – 18,481,646	- - - - - - - -	7140	18,481,547 – 18,481,646	-	7	110	60.31	-0.38	0.47	0.509423
5203	dm3.chr2R	18,484,791 – 18,484,900	- - - - - - - -	7141	18,484,791 – 18,484,900	-	8	115	64.19	-1.74	0.27	0.615052
5204	dm3.chr2R	18,488,382 – 18,488,472	- - - - - - - -	7142	18,488,382 – 18,488,472	+	7	101	83.51	-1.29	0.89	0.862580
5205	dm3.chr2R	18,494,007 – 18,494,143	- - CDS="CDS;ID=CDS_CG4046:3_529;Name=RpS16-cds;Parent=FBtr0071855;parent_type=mRNA" - - - - -	7143	18,494,007 – 18,494,143	-	15	136	83.21	-1.48	0.60	0.522258
5206	dm3.chr2R	18,504,549 – 18,504,668	- - - intron="intron;ID=intron_CG33143:1_CG33143:2;Name=CG33143-in;Parent=FBtr0071858;parent_type=mRNA" - - - -	7144	18,504,549 – 18,504,668	+	5	119	95.46	-1.76	0.88	0.715371
5207	dm3.chr2R	18,527,732 – 18,527,828	- - - - - - - -	7145	18,527,732 – 18,527,828	-	4	103	52.60	-1.17	0.34	0.668385
5208	dm3.chr2R	18,536,796 – 18,536,902	- - - intron="intron;ID=intron_CG3746:1_CG3746:2;Name=CG3746-in;Parent=FBtr0071929;parent_type=mRNA" - - - -	7146	18,536,796 – 18,536,902	-	12	113	62.41	-0.72	0.42	0.817163
5209	dm3.chr2R	18,538,920 – 18,539,021	- - - intron="intron;ID=intron_FBgn0034740:3_FBgn0034740:4;Name=CG3875-in;Parent=FBtr0071861;parent_type=mRNA" - - - -	7147	18,538,920 – 18,539,021	-	3	101	88.12	-2.19	0.82	0.902027
5210	dm3.chr2R	18,561,959 – 18,562,058	- - - - - - - -	7148	18,561,959 – 18,562,058	-	9	102	68.25	-1.31	0.44	0.803409
5211	dm3.chr2R	18,565,897 – 18,566,010	- - - - - - - -	7149	18,565,897 – 18,566,010	+	12	113	69.99	-1.20	0.44	0.839767
5212	dm3.chr2R	18,569,436 – 18,569,575	- - - - - - - -	7150	18,569,436 – 18,569,536	+	7	123	66.68	-1.62	0.45	0.850225
5212	dm3.chr2R	18,569,436 – 18,569,575	- - - - - - - -	7151	18,569,461 – 18,569,575	+	7	122	76.54	-1.28	0.62	0.595911
5213	dm3.chr2R	18,573,984 – 18,574,078	- - - - - - - -	7152	18,573,984 – 18,574,078	+	5	104	83.56	-1.88	0.82	0.935690
5213	dm3.chr2R	18,573,984 – 18,574,078	- - - - - - - -	7153	18,573,984 – 18,574,078	-	5	104	83.56	-2.69	0.82	0.992715
5214	dm3.chr2R	18,612,786 – 18,612,899	- - CDS="CDS;ID=CDS_FBgn0028371:8_631;Name=jbug-cds;Parent=FBtr0071919,FBtr0301375,FBtr0301376,FBtr0301377,FBtr0302116,FBtr0302117;parent_type=mRNA" - - - - -	7154	18,612,786 – 18,612,899	+	15	116	78.72	-1.78	0.55	0.945410
5214	dm3.chr2R	18,612,786 – 18,612,899		7155	18,612,786 – 18,612,899	-	15	116	78.72	-1.77	0.50	0.890717
5215	dm3.chr2R	18,616,387 – 18,616,448	- - - intron="intron;ID=intron_FBgn0028371:11_FBgn0028371:10;Name=jbug-in;Parent=FBtr0302116;parent_type=mRNA" - - - -	7156	18,616,387 – 18,616,448	-	11	64	75.59	-1.54	0.46	0.628623
5216	dm3.chr2R	18,641,112 – 18,641,172	- - - intron="intron;ID=intron_FBgn0259145:9_FBgn0259145:8;Name=CG42260-in;Parent=FBtr0299572,FBtr0299573;parent_type=mRNA" - - - -	7157	18,641,112 – 18,641,172	+	9	60	82.27	-1.73	0.64	0.826451
5217	dm3.chr2R	18,652,995 – 18,653,088	- - - - - - - -	7158	18,652,995 – 18,653,088	+	8	101	71.58	-0.80	0.56	0.549387
5218	dm3.chr2R	18,678,607 – 18,678,719	- - - - - - - -	7159	18,678,607 – 18,678,719	+	12	120	95.23	-2.51	0.84	0.938390
5219	dm3.chr2R	18,682,115 – 18,682,166	- - - - - - - -	7160	18,682,115 – 18,682,166	-	6	55	75.41	-2.71	0.51	0.991318
5220	dm3.chr2R	18,682,209 – 18,682,342	- - - - - - - -	7161	18,682,209 – 18,682,342	-	5	137	88.71	-1.53	0.80	0.509066
5221	dm3.chr2R	18,682,695 – 18,682,808	- - - - - - - -	7162	18,682,695 – 18,682,808	-	10	118	81.03	-1.01	0.69	0.556132
5222	dm3.chr2R	18,687,917 – 18,688,025	- - - - - - - -	7163	18,687,917 – 18,688,025	+	13	114	66.38	-1.49	0.55	0.997254
5223	dm3.chr2R	18,690,708 – 18,690,897	- - - - - - - -	7164	18,690,708 – 18,690,800	+	5	112	75.79	-1.41	0.60	0.541064
				7165	18,690,708 – 18,690,800	-	5	112	75.79	-1.71	0.55	0.642782
				7166	18,690,738 – 18,690,836	+	5	123	69.69	-2.58	0.43	0.972742
				7167	18,690,738 – 18,690,836	-	5	123	69.69	-2.29	0.42	0.915241
				7168	18,690,800 – 18,690,897	-	5	102	82.58	-1.79	0.62	0.514798
5224	dm3.chr2R	18,691,338 – 18,691,411	- - - - - - - -	7169	18,691,338 – 18,691,411	-	11	82	73.86	-1.57	0.67	0.985667
5225	dm3.chr2R	18,693,863 – 18,693,932	- - - - - - - -	7170	18,693,863 – 18,693,932	-	9	76	64.19	-0.64	0.45	0.622706
5226	dm3.chr2R	18,697,198 – 18,697,290	- - - intron="intron;ID=intron_FBgn0086408:1_FBgn0086408:3;Name=stl-in;Parent=FBtr0113110;parent_type=mRNA" - - - -	7171	18,697,198 – 18,697,290	+	8	116	65.49	-1.43	0.44	0.839806
5227	dm3.chr2R	18,724,790 – 18,724,880	- - - - - - - -	7172	18,724,790 – 18,724,880	+	7	105	68.43	-1.99	0.29	0.532445
5228	dm3.chr2R	18,727,288 – 18,727,462	- - - - - - - -	7173	18,727,288 – 18,727,395	-	5	136	68.53	-1.72	0.41	0.658607
5228	dm3.chr2R	18,727,288 – 18,727,462	- - - - - - - -	7174	18,727,395 – 18,727,462	-	6	70	70.29	-1.41	0.43	0.639544
5229	dm3.chr2R	18,727,699 – 18,727,795	- - - - - - - -	7175	18,727,699 – 18,727,795	-	8	107	68.17	-1.76	0.48	0.978592
5230	dm3.chr2R	18,738,268 – 18,738,384	- - CDS="CDS;ID=CDS_CG13531:3_502;Name=CG13531-cds;Parent=FBtr0071910;parent_type=mRNA" - - - - -	7176	18,738,268 – 18,738,382	-	13	114	77.41	-2.17	0.33	0.633800
5230	dm3.chr2R	18,738,268 – 18,738,384		7177	18,738,270 – 18,738,384	-	13	114	76.59	-2.06	0.32	0.566149
5231	dm3.chr2R	18,755,064 – 18,755,202	- - - - - - - -	7178	18,755,064 – 18,755,202	-	10	150	73.31	-1.57	0.52	0.939093
5232	dm3.chr2R	18,758,659 – 18,758,764	- - - - - - - -	7179	18,758,659 – 18,758,764	+	12	111	74.99	-2.15	0.35	0.654107
5232	dm3.chr2R	18,758,659 – 18,758,764	- - - - - - - -	7180	18,758,659 – 18,758,764	-	12	111	74.99	-2.00	0.54	0.970370
5233	dm3.chr2R	18,784,894 – 18,784,952	- - - intron="intron;ID=intron_FBgn0034797:2_FBgn0034797:3;Name=nahoda-in;Parent=FBtr0071942,FBtr0304795;parent_type=mRNA" - - - -	7181	18,784,894 – 18,784,952	-	6	59	92.40	-1.68	0.83	0.603282
5234	dm3.chr2R	18,785,792 – 18,785,883	- - - intron="intron;ID=intron_FBgn0034797:2_FBgn0034797:3;Name=nahoda-in;Parent=FBtr0071942,FBtr0304795;parent_type=mRNA" - - - -	7182	18,785,792 – 18,785,883	+	7	95	79.54	-2.02	0.49	0.589474
5235	dm3.chr2R	18,786,633 – 18,786,845	- - - intron="intron;ID=intron_FBgn0034797:2_FBgn0034797:3;Name=nahoda-in;Parent=FBtr0071942,FBtr0304795;parent_type=mRNA" - - - -	7183	18,786,633 – 18,786,735	-	7	110	67.09	-1.25	0.44	0.816896
5235	dm3.chr2R	18,786,633 – 18,786,845		7184	18,786,735 – 18,786,845	-	8	113	68.01	-0.80	0.53	0.767512
5236	dm3.chr2R	18,792,174 – 18,792,274	- - - intron="intron;ID=intron_FBgn0034797:3_FBgn0034797:4;Name=nahoda-in;Parent=FBtr0071942,FBtr0071943,FBtr0304795;parent_type=mRNA" - - - -	7185	18,792,174 – 18,792,274	+	5	110	79.00	-2.13	0.49	0.603454
5237	dm3.chr2R	18,794,627 – 18,794,737	- - - intron="intron;ID=intron_FBgn0034797:3_FBgn0034797:4;Name=nahoda-in;Parent=FBtr0071942,FBtr0071943,FBtr0304795;parent_type=mRNA" - - - -	7186	18,794,627 – 18,794,737	-	7	112	73.35	-1.53	0.57	0.929917
5238	dm3.chr2R	18,797,702 – 18,797,799	- - - intron="intron;ID=intron_FBgn0034797:3_FBgn0034797:4;Name=nahoda-in;Parent=FBtr0071942,FBtr0071943,FBtr0304795;parent_type=mRNA" - - - -	7187	18,797,702 – 18,797,799	+	6	110	63.28	-0.91	0.51	0.892046
5239	dm3.chr2R	18,813,422 – 18,813,516	- - - intron="intron;ID=intron_FBgn0261564:5_FBgn0261564:7;Name=CG42678-in;Parent=FBtr0302765,FBtr0302767;parent_type=mRNA" - - - -	7188	18,813,422 – 18,813,516	-	6	101	75.49	-1.45	0.64	0.857150
5240	dm3.chr2R	18,823,790 – 18,823,898	- - CDS="CDS;ID=CDS_FBgn0034802:2_655;Name=CG3800-cds;Parent=FBtr0071994;parent_type=mRNA" - - - - -	7189	18,823,790 – 18,823,898	-	14	108	82.63	-1.42	0.64	0.703942
5241	dm3.chr2R	18,843,461 – 18,843,571	- - - - - - - -	7190	18,843,461 – 18,843,571	-	8	114	73.55	-1.03	0.61	0.843238
5242	dm3.chr2R	18,855,654 – 18,855,745	- - - - - - - -	7191	18,855,654 – 18,855,745	-	3	103	76.07	-2.08	0.67	0.908783
5243	dm3.chr2R	18,867,458 – 18,867,554	- - - - - - - -	7192	18,867,458 – 18,867,554	-	3	96	76.57	-2.18	0.58	0.802110
5244	dm3.chr2R	18,891,126 – 18,891,222	- - - - - - - -	7193	18,891,126 – 18,891,222	-	12	115	72.49	-0.89	0.64	0.834625
5245	dm3.chr2R	18,894,562 – 18,894,652	- - - - - - - -	7194	18,894,562 – 18,894,652	+	12	92	93.01	-1.45	0.89	0.697374
5246	dm3.chr2R	18,896,258 – 18,896,359	- - - - - - - -	7195	18,896,258 – 18,896,359	+	7	107	76.18	-1.80	0.47	0.715249
5247	dm3.chr2R	18,898,174 – 18,898,268	- - - - - - - -	7196	18,898,174 – 18,898,268	-	10	109	73.23	-1.84	0.53	0.933783
5248	dm3.chr2R	18,901,312 – 18,901,420	- - - intron="intron;ID=intron_FBgn0261705:3_FBgn0261705:2;Name=CG42741-in;Parent=FBtr0303203;parent_type=mRNA" - - - -	7197	18,901,312 – 18,901,420	-	7	120	74.03	-0.98	0.58	0.540015
5249	dm3.chr2R	18,904,019 – 18,904,116	- - - intron="intron;ID=intron_FBgn0261705:3_FBgn0261705:2;Name=CG42741-in;Parent=FBtr0303203;parent_type=mRNA" - - - -	7198	18,904,019 – 18,904,116	-	10	119	84.51	-2.01	0.70	0.839111
5250	dm3.chr2R	18,910,396 – 18,910,494	- - - intron="intron;ID=intron_FBgn0261705:3_FBgn0261705:2;Name=CG42741-in;Parent=FBtr0303203;parent_type=mRNA" - - - -	7199	18,910,396 – 18,910,494	-	12	114	84.89	-1.64	0.71	0.715545
5251	dm3.chr2R	18,912,832 – 18,912,922	- - - intron="intron;ID=intron_FBgn0261705:3_FBgn0261705:2;Name=CG42741-in;Parent=FBtr0303203;parent_type=mRNA" - - - -	7200	18,912,832 – 18,912,922	+	8	109	77.28	-1.74	0.53	0.702243
5252	dm3.chr2R	18,918,386 – 18,918,500	- - - intron="intron;ID=intron_FBgn0261705:3_FBgn0261705:2;Name=CG42741-in;Parent=FBtr0303203;parent_type=mRNA" - - - -	7201	18,918,386 – 18,918,500	-	10	126	88.01	-1.50	0.78	0.594335
5253	dm3.chr2R	18,921,072 – 18,921,168	- - - intron="intron;ID=intron_FBgn0261705:3_FBgn0261705:2;Name=CG42741-in;Parent=FBtr0303203;parent_type=mRNA" - - - -	7202	18,921,072 – 18,921,168	-	10	97	60.68	-0.67	0.38	0.506203
5254	dm3.chr2R	18,921,841 – 18,921,939	- - - intron="intron;ID=intron_FBgn0261705:3_FBgn0261705:2;Name=CG42741-in;Parent=FBtr0303203;parent_type=mRNA" - - - -	7203	18,921,841 – 18,921,939	+	6	104	64.60	-1.70	0.32	0.583429
5255	dm3.chr2R	18,922,591 – 18,922,704	- - - intron="intron;ID=intron_FBgn0261705:3_FBgn0261705:2;Name=CG42741-in;Parent=FBtr0303203;parent_type=mRNA" - - - -	7204	18,922,591 – 18,922,704	+	12	117	90.11	-2.83	0.65	0.935371
5256	dm3.chr2R	18,942,193 – 18,942,303	- - - - - - - -	7205	18,942,193 – 18,942,303	-	5	112	84.67	-2.68	0.62	0.928256
5257	dm3.chr2R	18,959,538 – 18,959,625	FBnoncoding="tRNA;ID=FBtr0071983;Name=tRNA:CR30201-RA;Parent=FBgn0050201;Alias=CR30201-RA;Dbxref=FlyBase_Annotation_IDs:CR30201-RA;score_text=Weakly" tRNAscann="Ser_chr2R_trna53" - - "Rfam_10.0=RF00005;tRNA;AAJJ01001810.1/15181-15262\|6.0e-33" "Noncode_2.0=n197986_u194129_AK029664_mRNAlike\|1.1e-09" "unique_Noncode_2.0=u194129_mRNAlike\|9.7e-10" -	7206	18,959,538 – 18,959,625	+	13	87	89.68	-3.30	0.97	0.998484
5257	dm3.chr2R	18,959,538 – 18,959,625		7207	18,959,538 – 18,959,625	-	13	87	89.68	-2.33	0.98	0.993871
5258	dm3.chr2R	18,960,102 – 18,960,201	FBnoncoding="tRNA;ID=FBtr0071962;Name=tRNA:CR30202-RA;Parent=FBgn0050202;Alias=CR30202-RA;Dbxref=FlyBase_Annotation_IDs:CR30202-RA;score_text=Weakly" tRNAscann="Ser_chr2R_trna48" - - "Rfam_10.0=RF00005;tRNA;AAJJ01001810.1/15181-15262\|4.5e-34" "Noncode_2.0=n197986_u194129_AK029664_mRNAlike\|2.2e-14" "unique_Noncode_2.0=u194129_mRNAlike\|1.9e-14" -	7208	18,960,102 – 18,960,201	+	12	102	82.64	-1.00	1.00	0.930376
5258	dm3.chr2R	18,960,102 – 18,960,201		7209	18,960,102 – 18,960,201	-	12	102	82.64	-1.81	0.80	0.972748
5259	dm3.chr2R	18,961,353 – 18,961,464	FBnoncoding="snoRNA;ID=FBtr0091664;Name=snoRNA:229-RA;Parent=FBgn0065073;Dbxref=FlyBase_Annotation_IDs:CR33684-RA,REFSEQ:NR_002553;score_text=Weakly" - - intron="intron;ID=intron_CG9888:2_CG9888:3;Name=Fib-in;Parent=FBtr0071982;parent_type=mRNA" - "Noncode_2.0=n3499_u3128_AJ543997_snoRNA_Drosophila\|2.7e-57" "unique_Noncode_2.0=u3128_snoRNA_Drosophila\|2.4e-57" -	7210	18,961,353 – 18,961,464	-	13	118	71.10	-1.66	0.35	0.792903
5260	dm3.chr2R	18,962,267 – 18,962,364	- - - - - - - -	7211	18,962,267 – 18,962,364	+	5	110	61.61	-1.63	0.30	0.516673
5261	dm3.chr2R	18,977,161 – 18,977,267	- - - - - - - -	7212	18,977,161 – 18,977,267	+	6	113	65.21	-1.41	0.46	0.911521
5262	dm3.chr2R	18,995,998 – 18,996,088	- - - - - - - -	7213	18,995,998 – 18,996,088	+	11	114	69.53	-2.15	0.26	0.515291
5263	dm3.chr2R	19,000,620 – 19,000,723	- - - - - - - -	7214	19,000,620 – 19,000,723	+	12	114	76.42	-2.24	0.32	0.524888
5264	dm3.chr2R	19,006,374 – 19,006,467	- - - - - - - -	7215	19,006,374 – 19,006,467	-	6	114	80.74	-2.35	0.65	0.951117
5265	dm3.chr2R	19,028,681 – 19,028,772	- - - - - - - -	7216	19,028,681 – 19,028,772	-	10	96	74.54	-1.68	0.49	0.778380
5266	dm3.chr2R	19,037,573 – 19,037,723	- - - - - - - -	7217	19,037,573 – 19,037,723	-	9	174	69.32	-1.75	0.49	0.970788
5267	dm3.chr2R	19,042,718 – 19,042,783	- - - - - - - -	7218	19,042,718 – 19,042,783	-	8	65	88.35	-2.07	0.87	0.963396
5268	dm3.chr2R	19,050,022 – 19,050,154	- - - - - - - -	7219	19,050,022 – 19,050,120	+	8	115	79.99	-2.09	0.54	0.730211
5268	dm3.chr2R	19,050,022 – 19,050,154	- - - - - - - -	7220	19,050,058 – 19,050,154	-	12	120	80.65	-1.56	0.70	0.839182
5269	dm3.chr2R	19,065,047 – 19,065,122	- - - intron="intron;ID=intron_FBgn0085400:13_FBgn0085400:12;Name=CG34371-in;Parent=FBtr0112596;parent_type=mRNA" - - - -	7221	19,065,047 – 19,065,122	+	4	75	91.33	-1.80	0.93	0.929934
5270	dm3.chr2R	19,074,713 – 19,074,834	- - - intron="intron;ID=intron_FBgn0085400:13_FBgn0085400:12;Name=CG34371-in;Parent=FBtr0112596;parent_type=mRNA" - - - -	7222	19,074,713 – 19,074,834	+	6	123	77.57	-1.70	0.49	0.577187
5271	dm3.chr2R	19,077,039 – 19,077,105	- - - intron="intron;ID=intron_FBgn0085400:13_FBgn0085400:12;Name=CG34371-in;Parent=FBtr0112596;parent_type=mRNA" - - - -	7223	19,077,039 – 19,077,105	+	7	77	70.77	-1.83	0.48	0.844323
5272	dm3.chr2R	19,112,274 – 19,112,368	- - - - - - - -	7224	19,112,274 – 19,112,368	+	7	98	58.85	-2.81	0.15	0.938659
5273	dm3.chr2R	19,112,580 – 19,112,677	- - - - - - - -	7225	19,112,580 – 19,112,677	-	9	112	76.62	-1.34	0.54	0.563283
5274	dm3.chr2R	19,121,568 – 19,121,684	- - - - - - - -	7226	19,121,568 – 19,121,675	-	5	109	91.43	-2.20	0.89	0.955743
5274	dm3.chr2R	19,121,568 – 19,121,684	- - - - - - - -	7227	19,121,577 – 19,121,684	-	6	120	72.48	-2.25	0.57	0.985884
5275	dm3.chr2R	19,124,597 – 19,124,717	- - - - - - - -	7228	19,124,597 – 19,124,717	+	5	120	76.89	-1.25	0.72	0.714172
5276	dm3.chr2R	19,125,822 – 19,125,972	- - - - - - - -	7229	19,125,822 – 19,125,932	+	6	111	71.04	-2.04	0.46	0.963015
				7230	19,125,822 – 19,125,932	-	6	111	71.04	-2.47	0.41	0.980004
				7231	19,125,858 – 19,125,972	-	6	115	66.51	-1.60	0.42	0.910656
5277	dm3.chr2R	19,127,173 – 19,127,275	- - - - - - - -	7232	19,127,173 – 19,127,275	+	6	109	74.06	-1.47	0.48	0.534129
5277	dm3.chr2R	19,127,173 – 19,127,275	- - - - - - - -	7233	19,127,173 – 19,127,275	-	6	109	74.06	-1.72	0.51	0.837281
5278	dm3.chr2R	19,128,438 – 19,128,549	- - - - - - - -	7234	19,128,438 – 19,128,549	+	3	111	77.07	-2.18	0.90	0.987583
5278	dm3.chr2R	19,128,438 – 19,128,549	- - - - - - - -	7235	19,128,438 – 19,128,549	-	3	111	77.07	-1.23	0.82	0.655491
5279	dm3.chr2R	19,133,205 – 19,133,317	- - - - - - - -	7236	19,133,205 – 19,133,317	-	6	128	66.87	-1.94	0.31	0.640773
5280	dm3.chr2R	19,144,665 – 19,144,715	- - - - - - - -	7237	19,144,665 – 19,144,715	-	3	50	94.67	-1.85	1.05	0.988378
5281	dm3.chr2R	19,145,155 – 19,145,247	- - - - - - - -	7238	19,145,155 – 19,145,247	+	7	119	64.48	-3.82	0.19	0.986440
5282	dm3.chr2R	19,146,694 – 19,146,789	- - - - - - - -	7239	19,146,694 – 19,146,789	+	6	99	81.37	-1.82	0.55	0.517077
5282	dm3.chr2R	19,146,694 – 19,146,789	- - - - - - - -	7240	19,146,694 – 19,146,789	-	6	99	81.37	-1.65	0.67	0.756600
5283	dm3.chr2R	19,176,680 – 19,176,740	- - - - - - - -	7241	19,176,680 – 19,176,740	+	6	61	78.67	-0.78	0.86	0.746414
5284	dm3.chr2R	19,177,650 – 19,177,780	- - - - - - - -	7242	19,177,650 – 19,177,780	-	5	134	86.98	-2.33	0.89	0.984827
5285	dm3.chr2R	19,183,117 – 19,183,227	- - - - - - - -	7243	19,183,117 – 19,183,227	-	12	118	81.16	-2.74	0.47	0.948465
5286	dm3.chr2R	19,194,613 – 19,194,663	- - - - - - - -	7244	19,194,613 – 19,194,663	-	6	60	77.36	-0.46	0.93	0.613159
5287	dm3.chr2R	19,203,930 – 19,203,990	- - - - - - - -	7245	19,203,930 – 19,203,990	-	8	73	72.92	-1.14	0.58	0.678999
5288	dm3.chr2R	19,222,388 – 19,222,480	- - - - - - - -	7246	19,222,388 – 19,222,480	-	8	97	64.62	-1.00	0.38	0.667564
5289	dm3.chr2R	19,225,032 – 19,225,124	- - - - - - - -	7247	19,225,032 – 19,225,124	+	8	104	78.57	-1.57	0.59	0.653161
5290	dm3.chr2R	19,236,781 – 19,236,885	- - - - - - - -	7248	19,236,781 – 19,236,877	+	12	112	64.97	-1.62	0.29	0.599082
				7249	19,236,786 – 19,236,885	+	12	111	66.20	-1.64	0.29	0.593750
				7250	19,236,786 – 19,236,885	-	12	111	66.20	-2.17	0.20	0.532698
5291	dm3.chr2R	19,245,230 – 19,245,301	- - - - - - - -	7251	19,245,230 – 19,245,301	-	6	71	75.40	-1.40	0.56	0.719945
5292	dm3.chr2R	19,252,843 – 19,252,956	- - - intron="intron;ID=intron_CG3496:2_CG3496:3;Name=vir-in;Parent=FBtr0072037;parent_type=mRNA" - - - -	7252	19,252,843 – 19,252,956	+	12	115	60.69	-0.90	0.32	0.568306
5293	dm3.chr2R	19,257,376 – 19,257,476	- - CDS="CDS;ID=CDS_CG13550:2_525;Name=CG13550-cds;Parent=FBtr0072010;parent_type=mRNA" - - - - -	7253	19,257,376 – 19,257,476	+	5	100	75.23	-2.78	0.49	0.960048
5294	dm3.chr2R	19,269,014 – 19,269,078	- - CDS="CDS;ID=CDS_FBgn0034856:2_636;Name=yellow-d2-cds;Parent=FBtr0072012;parent_type=mRNA" - - - - -	7254	19,269,014 – 19,269,078	+	12	66	73.24	-0.29	0.70	0.648759
5295	dm3.chr2R	19,271,431 – 19,271,529	- - CDS="CDS;ID=CDS_FBgn0050414:1_636;Name=CG30414-cds;Parent=FBtr0072032;parent_type=mRNA" - - - - -	7255	19,271,431 – 19,271,529	-	6	98	68.15	-0.59	0.54	0.599351
5296	dm3.chr2R	19,305,910 – 19,306,046	- - - - - - - -	7256	19,305,910 – 19,306,006	-	4	97	74.73	-1.82	0.60	0.880737
5296	dm3.chr2R	19,305,910 – 19,306,046	- - - - - - - -	7257	19,305,939 – 19,306,046	-	5	116	68.56	-1.87	0.36	0.519869
5297	dm3.chr2R	19,307,903 – 19,308,026	- - - - - - - -	7258	19,307,903 – 19,308,008	-	6	110	72.78	-1.61	0.53	0.885381
				7259	19,307,934 – 19,308,026	+	6	108	69.05	-1.36	0.48	0.721667
				7260	19,307,934 – 19,308,026	-	6	108	69.05	-1.44	0.51	0.856349
5298	dm3.chr2R	19,314,360 – 19,314,456	- - - - - - - -	7261	19,314,360 – 19,314,456	+	6	96	80.74	-1.44	0.75	0.842429
5299	dm3.chr2R	19,317,012 – 19,317,110	- - - - - - - -	7262	19,317,012 – 19,317,110	-	6	109	88.52	-2.11	0.84	0.939013
5300	dm3.chr2R	19,318,749 – 19,318,864	- - - - - - - -	7263	19,318,749 – 19,318,864	+	5	120	79.97	-2.40	0.54	0.878304
5301	dm3.chr2R	19,319,696 – 19,319,764	- - - - - - - -	7264	19,319,696 – 19,319,764	+	7	68	71.12	-1.83	0.50	0.976171
5302	dm3.chr2R	19,319,978 – 19,320,100	- - - - - - - -	7265	19,319,978 – 19,320,100	-	5	126	70.29	-1.57	0.61	0.930578
5303	dm3.chr2R	19,338,183 – 19,338,239	- - - - - - - -	7266	19,338,183 – 19,338,239	+	8	62	71.16	-2.24	0.54	0.995138
5304	dm3.chr2R	19,363,787 – 19,363,878	- - CDS="CDS;ID=CDS_FBgn0034867:2_628;Name=CG13557-cds;Parent=FBtr0072019;parent_type=mRNA" - - - - -	7267	19,363,787 – 19,363,878	+	7	91	63.93	-0.35	0.51	0.529919
5305	dm3.chr2R	19,368,217 – 19,368,278	- - - - - - - -	7268	19,368,217 – 19,368,278	-	6	73	59.45	-1.55	0.37	0.855953
5306	dm3.chr2R	19,369,189 – 19,369,301	- - - intron="intron;ID=intron_FBgn0085401:5_FBgn0085401:6;Name=CG34372-in;Parent=FBtr0273218;parent_type=mRNA" - - - -	7269	19,369,189 – 19,369,301	+	3	112	97.02	-1.45	0.94	0.697937
5306	dm3.chr2R	19,369,189 – 19,369,301		7270	19,369,189 – 19,369,301	-	3	112	97.02	-1.97	0.86	0.684003
5307	dm3.chr2R	19,369,341 – 19,369,453	- - - intron="intron;ID=intron_FBgn0085401:5_FBgn0085401:6;Name=CG34372-in;Parent=FBtr0273218;parent_type=mRNA" - - - -	7271	19,369,341 – 19,369,445	-	3	104	91.00	-1.76	0.91	0.875934
				7272	19,369,349 – 19,369,453	+	3	104	90.35	-1.54	0.89	0.721823
				7273	19,369,349 – 19,369,453	-	3	104	90.35	-2.27	0.89	0.959346
5308	dm3.chr2R	19,373,279 – 19,373,442	- - - intron="intron;ID=intron_FBgn0085401:10_FBgn0085401:11;Name=CG34372-in;Parent=FBtr0273218;parent_type=mRNA" - - - -	7274	19,373,279 – 19,373,374	+	4	109	69.08	-1.63	0.46	0.525868
				7275	19,373,338 – 19,373,442	+	4	116	69.07	-1.56	0.49	0.657914
				7276	19,373,338 – 19,373,442	-	4	116	69.07	-1.99	0.41	0.704349
5309	dm3.chr2R	19,381,735 – 19,381,789	- - - - - - - -	7277	19,381,735 – 19,381,789	+	5	58	67.43	-1.31	0.44	0.657910
5309	dm3.chr2R	19,381,735 – 19,381,789	- - - - - - - -	7278	19,381,735 – 19,381,789	-	5	58	67.43	-1.34	0.41	0.540442
5310	dm3.chr2R	19,382,757 – 19,382,814	- - - - - - - -	7279	19,382,757 – 19,382,814	-	8	71	68.05	-1.13	0.49	0.652086
5311	dm3.chr2R	19,384,300 – 19,384,538	- - - - - - - -	7280	19,384,300 – 19,384,425	+	6	140	70.04	-1.58	0.40	0.628705
5311	dm3.chr2R	19,384,300 – 19,384,538	- - - - - - - -	7281	19,384,425 – 19,384,538	+	5	116	92.99	-2.30	0.81	0.869000
5312	dm3.chr2R	19,384,958 – 19,385,048	- - - - - - - -	7282	19,384,958 – 19,385,048	-	7	101	64.31	-1.12	0.42	0.690012
5313	dm3.chr2R	19,388,851 – 19,388,944	- - - - - - - -	7283	19,388,851 – 19,388,944	+	10	107	69.47	-2.42	0.26	0.838028
5313	dm3.chr2R	19,388,851 – 19,388,944	- - - - - - - -	7284	19,388,851 – 19,388,944	-	10	107	69.47	-2.10	0.27	0.656687
5314	dm3.chr2R	19,401,667 – 19,401,759	- - - - - - - -	7285	19,401,667 – 19,401,759	+	12	118	75.99	-1.65	0.50	0.563789
5315	dm3.chr2R	19,404,541 – 19,404,630	- - - - - - - -	7286	19,404,541 – 19,404,630	+	6	92	77.05	-1.89	0.55	0.825065
5316	dm3.chr2R	19,424,359 – 19,424,415	- - - intron="intron;ID=intron_FBgn0000241:8_FBgn0000241:6;Name=bw-in;Parent=FBtr0072117;parent_type=mRNA" - - - -	7287	19,424,359 – 19,424,415	+	7	68	61.94	-0.90	0.55	0.942934
5316	dm3.chr2R	19,424,359 – 19,424,415		7288	19,424,359 – 19,424,415	-	7	68	61.94	-1.23	0.72	0.995370
5317	dm3.chr2R	19,428,447 – 19,428,543	- - - - - - - -	7289	19,428,447 – 19,428,543	-	3	96	77.04	-1.46	0.74	0.590184
5318	dm3.chr2R	19,435,473 – 19,435,523	- - - - - - - -	7290	19,435,473 – 19,435,523	-	3	50	96.00	-1.88	0.88	0.741101
5319	dm3.chr2R	19,443,758 – 19,443,838	- - - - - - - -	7291	19,443,758 – 19,443,838	+	5	80	77.71	-2.15	0.76	0.986262
5319	dm3.chr2R	19,443,758 – 19,443,838	- - - - - - - -	7292	19,443,758 – 19,443,838	-	5	80	77.71	-2.49	0.67	0.989999
5320	dm3.chr2R	19,449,015 – 19,449,125	- - CDS="CDS;ID=CDS_FBgn0015277:3_652;Name=Pi3K59F-cds;Parent=FBtr0072064;parent_type=mRNA" - - - - -	7293	19,449,015 – 19,449,125	+	13	113	70.91	-1.26	0.42	0.774253
5321	dm3.chr2R	19,464,107 – 19,464,201	- - - intron="intron;ID=intron_FBgn0015903:2_FBgn0015903:6;Name=apt-in;Parent=FBtr0072069;parent_type=mRNA" - - - -	7294	19,464,107 – 19,464,201	+	8	116	62.82	-1.28	0.51	0.980693
5322	dm3.chr2R	19,466,044 – 19,466,119	- - - intron="intron;ID=intron_FBgn0015903:2_FBgn0015903:6;Name=apt-in;Parent=FBtr0072069;parent_type=mRNA" - - - -	7295	19,466,044 – 19,466,119	-	5	76	64.52	-2.08	0.46	0.987349
5323	dm3.chr2R	19,469,287 – 19,469,377	- - - intron="intron;ID=intron_FBgn0015903:4_FBgn0015903:6;Name=apt-in;Parent=FBtr0072067;parent_type=mRNA" - - - -	7296	19,469,287 – 19,469,377	+	5	106	75.18	-3.03	0.43	0.959354
5323	dm3.chr2R	19,469,287 – 19,469,377		7297	19,469,287 – 19,469,377	-	5	106	75.18	-1.39	0.69	0.709612
5324	dm3.chr2R	19,475,942 – 19,476,009	- - - intron="intron;ID=intron_FBgn0015903:5_FBgn0015903:6;Name=apt-in;Parent=FBtr0072068;parent_type=mRNA" - - - -	7298	19,475,942 – 19,476,009	-	6	75	68.48	-0.76	0.66	0.909227
5325	dm3.chr2R	19,484,782 – 19,484,875	- - - - - - - -	7299	19,484,782 – 19,484,875	-	12	107	70.20	-0.45	0.65	0.828726
5326	dm3.chr2R	19,502,897 – 19,502,996	- - - - - - - -	7300	19,502,897 – 19,502,996	+	5	109	79.26	-1.64	0.66	0.681351
5326	dm3.chr2R	19,502,897 – 19,502,996	- - - - - - - -	7301	19,502,897 – 19,502,996	-	5	109	79.26	-1.34	0.70	0.538890
5327	dm3.chr2R	19,519,714 – 19,519,898	- - - - - - - -	7302	19,519,714 – 19,519,788	+	5	74	77.52	-1.80	0.65	0.888908
				7303	19,519,714 – 19,519,788	-	5	74	77.52	-1.72	0.60	0.756301
				7304	19,519,788 – 19,519,898	-	7	118	75.90	-2.25	0.36	0.646213
5328	dm3.chr2R	19,521,900 – 19,522,013	- - - intron="intron;ID=intron_CG5403:1_CG5403:2;Name=retn-in;Parent=FBtr0072072,FBtr0072073;parent_type=mRNA" - - - -	7305	19,521,900 – 19,522,013	+	12	120	90.49	-1.52	0.89	0.801492
5329	dm3.chr2R	19,524,235 – 19,524,359	- - - intron="intron;ID=intron_CG5403:1_CG5403:2;Name=retn-in;Parent=FBtr0072072,FBtr0072073;parent_type=mRNA" - - - -	7306	19,524,235 – 19,524,359	+	6	138	74.96	-1.82	0.52	0.851502
5330	dm3.chr2R	19,539,720 – 19,539,811	- - - intron="intron;ID=intron_CG5403:9_CG5403:10;Name=retn-in;Parent=FBtr0072072,FBtr0072073;parent_type=mRNA" - - - -	7307	19,539,720 – 19,539,811	+	4	101	80.14	-1.27	0.77	0.566267
5331	dm3.chr2R	19,545,863 – 19,545,958	- - - intron="intron;ID=intron_FBgn0034886:2_FBgn0034886:12;Name=Pde8-in;Parent=FBtr0072074;parent_type=mRNA" - - - -	7308	19,545,863 – 19,545,958	-	6	107	81.28	-1.74	0.66	0.734074
5332	dm3.chr2R	19,547,884 – 19,548,015	- - - - - - - -	7309	19,547,884 – 19,548,015	+	4	131	80.60	-1.86	0.68	0.718051
5332	dm3.chr2R	19,547,884 – 19,548,015	- - - - - - - -	7310	19,547,884 – 19,548,015	-	4	131	80.60	-2.24	0.65	0.872942
5333	dm3.chr2R	19,551,000 – 19,551,125	- - - intron="intron;ID=intron_FBgn0034886:9_FBgn0034886:12;Name=Pde8-in;Parent=FBtr0302130;parent_type=mRNA" - - - -	7311	19,551,000 – 19,551,097	-	5	117	63.12	-2.46	0.30	0.923535
5333	dm3.chr2R	19,551,000 – 19,551,125		7312	19,551,032 – 19,551,125	-	5	117	54.97	-1.15	0.40	0.825836
5334	dm3.chr2R	19,597,316 – 19,597,437	- - - - - - - -	7313	19,597,316 – 19,597,437	+	7	128	63.45	-1.69	0.35	0.856636
5334	dm3.chr2R	19,597,316 – 19,597,437	- - - - - - - -	7314	19,597,316 – 19,597,437	-	7	128	63.45	-1.37	0.40	0.841550
5335	dm3.chr2R	19,599,582 – 19,599,694	- - - - - - - -	7315	19,599,582 – 19,599,694	+	6	118	83.89	-2.17	0.73	0.934492
5335	dm3.chr2R	19,599,582 – 19,599,694	- - - - - - - -	7316	19,599,582 – 19,599,694	-	6	118	83.89	-2.76	0.73	0.988369
5336	dm3.chr2R	19,600,883 – 19,600,999	- - - - - - - -	7317	19,600,883 – 19,600,999	+	6	119	70.81	-1.24	0.54	0.719638
5337	dm3.chr2R	19,605,676 – 19,605,771	- - - intron="intron;ID=intron_FBgn0034897:4_FBgn0034897:5;Name=Sesn-in;Parent=FBtr0113114;parent_type=mRNA" - - - -	7318	19,605,676 – 19,605,771	+	7	105	70.94	-2.01	0.36	0.567164
5337	dm3.chr2R	19,605,676 – 19,605,771		7319	19,605,676 – 19,605,771	-	7	105	70.94	-2.37	0.51	0.986741
5338	dm3.chr2R	19,606,199 – 19,606,262	- - - intron="intron;ID=intron_FBgn0034897:4_FBgn0034897:5;Name=Sesn-in;Parent=FBtr0113114;parent_type=mRNA" - - - -	7320	19,606,199 – 19,606,262	+	6	66	70.20	-2.60	0.30	0.938848
5339	dm3.chr2R	19,608,476 – 19,608,567	- - - intron="intron;ID=intron_FBgn0034897:4_FBgn0034897:5;Name=Sesn-in;Parent=FBtr0113114;parent_type=mRNA" - - - -	7321	19,608,476 – 19,608,567	-	6	109	77.18	-2.47	0.40	0.698903
5340	dm3.chr2R	19,609,592 – 19,609,642	- - - intron="intron;ID=intron_FBgn0034897:4_FBgn0034897:5;Name=Sesn-in;Parent=FBtr0113114;parent_type=mRNA" - - - -	7322	19,609,592 – 19,609,642	-	5	50	96.20	-0.95	0.98	0.601667
5341	dm3.chr2R	19,612,727 – 19,612,818	- - - intron="intron;ID=intron_FBgn0034897:5_FBgn0034897:6;Name=Sesn-in;Parent=FBtr0072087,FBtr0113113,FBtr0113114;parent_type=mRNA" - - - -	7323	19,612,727 – 19,612,818	-	4	102	64.60	-1.00	0.51	0.556368
5342	dm3.chr2R	19,614,081 – 19,614,196	- - - intron="intron;ID=intron_FBgn0034897:5_FBgn0034897:6;Name=Sesn-in;Parent=FBtr0072087,FBtr0113113,FBtr0113114;parent_type=mRNA" - - - -	7324	19,614,081 – 19,614,196	-	3	115	58.65	-2.04	0.42	0.951075
5343	dm3.chr2R	19,615,796 – 19,615,956	- - - intron="intron;ID=intron_FBgn0034897:5_FBgn0034897:6;Name=Sesn-in;Parent=FBtr0072087,FBtr0113113,FBtr0113114;parent_type=mRNA" - - - -	7325	19,615,796 – 19,615,916	-	4	120	69.60	-1.22	0.58	0.594743
				7326	19,615,836 – 19,615,956	+	3	120	74.36	-2.20	0.48	0.579694
				7327	19,615,836 – 19,615,956	-	3	120	74.36	-2.22	0.71	0.968775
5344	dm3.chr2R	19,621,532 – 19,621,677	- - - - - - - -	7328	19,621,532 – 19,621,645	+	11	119	78.70	-1.72	0.54	0.831760
				7329	19,621,570 – 19,621,670	+	9	117	68.57	-2.47	0.71	0.999449
				7330	19,621,570 – 19,621,670	-	9	117	68.57	-2.25	0.49	0.995291
				7331	19,621,577 – 19,621,677	+	8	109	71.61	-0.91	0.64	0.804134
5345	dm3.chr2R	19,630,883 – 19,630,980	- - - intron="intron;ID=intron_FBgn0000562:7_FBgn0000562:6;Name=egl-in;Parent=FBtr0114586;parent_type=mRNA" - - - -	7332	19,630,883 – 19,630,980	+	7	104	67.14	-2.20	0.64	0.998222
5345	dm3.chr2R	19,630,883 – 19,630,980		7333	19,630,883 – 19,630,980	-	7	104	67.14	-1.35	0.62	0.970358
5346	dm3.chr2R	19,631,653 – 19,631,762	- - - intron="intron;ID=intron_FBgn0000562:7_FBgn0000562:6;Name=egl-in;Parent=FBtr0114586;parent_type=mRNA" - - - -	7334	19,631,653 – 19,631,762	+	6	110	69.42	-1.01	0.49	0.613711
5347	dm3.chr2R	19,634,778 – 19,634,847	- - - - - - - -	7335	19,634,778 – 19,634,847	+	5	86	65.70	-1.82	0.56	0.980611
5348	dm3.chr2R	19,653,379 – 19,653,473	- - - intron="intron;ID=intron_FBgn0034903:11_FBgn0034903:9;Name=CG9850-in;Parent=FBtr0100330;parent_type=mRNA" - - - -	7336	19,653,379 – 19,653,473	-	8	113	80.16	-2.72	0.51	0.950238
5349	dm3.chr2R	19,654,425 – 19,654,524	- - - intron="intron;ID=intron_FBgn0034903:11_FBgn0034903:9;Name=CG9850-in;Parent=FBtr0100330;parent_type=mRNA" - - - -	7337	19,654,425 – 19,654,524	+	8	101	85.48	-1.77	0.70	0.637511
5350	dm3.chr2R	19,682,146 – 19,682,247	- - - intron="intron;ID=intron_FBgn0034903:18_FBgn0034903:17;Name=CG9850-in;Parent=FBtr0100329,FBtr0290120;parent_type=mRNA" - - - -	7338	19,682,146 – 19,682,247	+	9	112	73.73	-1.82	0.42	0.732804
5350	dm3.chr2R	19,682,146 – 19,682,247		7339	19,682,146 – 19,682,247	-	9	112	73.73	-2.11	0.41	0.873382
5351	dm3.chr2R	19,689,482 – 19,689,598	- - CDS="CDS;ID=CDS_FBgn0050177:1_648;Name=CG30177-cds;Parent=FBtr0072122;parent_type=mRNA" - - - - -	7340	19,689,482 – 19,689,598	-	6	117	69.57	-2.11	0.42	0.960870
5352	dm3.chr2R	19,704,572 – 19,704,667	- - - intron="intron;ID=intron_CG4797:1_CG4797:2;Name=CG4797-in;Parent=FBtr0072239;parent_type=mRNA" - - - -	7341	19,704,572 – 19,704,667	+	4	103	74.47	-2.09	0.45	0.702214
5353	dm3.chr2R	19,709,955 – 19,710,052	- - - intron="intron;ID=intron_FBgn0034911:1_FBgn0034911:2;Name=CG5549-in;Parent=FBtr0301162;parent_type=mRNA" - - - -	7342	19,709,955 – 19,710,052	+	6	120	79.59	-1.73	0.59	0.598841
5354	dm3.chr2R	19,713,771 – 19,713,877	- - - - - - - -	7343	19,713,771 – 19,713,877	+	6	118	77.29	-2.82	0.58	0.993570
5355	dm3.chr2R	19,720,594 – 19,720,687	- - - intron="intron;ID=intron_FBgn0034911:3_FBgn0034911:4;Name=CG5549-in;Parent=FBtr0301162;parent_type=mRNA" - - - -	7344	19,720,594 – 19,720,687	-	5	100	80.44	-0.94	0.83	0.515374
5356	dm3.chr2R	19,726,110 – 19,726,166	- - - - - - - -	7345	19,726,110 – 19,726,166	+	5	57	95.06	-2.62	0.71	0.703632
5357	dm3.chr2R	19,733,596 – 19,733,648	- - - intron="intron;ID=intron_FBgn0034914:3_FBgn0034914:4;Name=CG5554-in;Parent=FBtr0072126;parent_type=mRNA" - - - -	7346	19,733,596 – 19,733,648	-	8	54	90.20	-1.01	0.92	0.556992
5358	dm3.chr2R	19,735,859 – 19,735,975	- - - - - - - -	7347	19,735,859 – 19,735,975	-	3	128	84.95	-2.22	0.63	0.500000
5359	dm3.chr2R	19,747,530 – 19,747,662	- - CDS="CDS;ID=CDS_FBgn0025790:4_619;Name=TBPH-cds;Parent=FBtr0301644;parent_type=mRNA" - - - - -	7348	19,747,530 – 19,747,629	+	14	117	69.82	-1.80	0.38	0.876636
5359	dm3.chr2R	19,747,530 – 19,747,662		7349	19,747,561 – 19,747,662	-	14	110	71.34	-1.31	0.52	0.942909
5360	dm3.chr2R	19,752,844 – 19,752,957	- - - - - - - -	7350	19,752,844 – 19,752,957	+	5	115	87.57	-1.76	0.75	0.609550
5360	dm3.chr2R	19,752,844 – 19,752,957	- - - - - - - -	7351	19,752,844 – 19,752,957	-	5	115	87.57	-1.57	0.80	0.630754
5361	dm3.chr2R	19,760,609 – 19,760,730	- - - intron="intron;ID=intron_CG5575:1_CG5575:2;Name=ken-in;Parent=FBtr0072129;parent_type=mRNA" - - - -	7352	19,760,609 – 19,760,711	+	6	106	88.60	-2.02	0.68	0.559435
5361	dm3.chr2R	19,760,609 – 19,760,730		7353	19,760,637 – 19,760,730	-	6	107	78.24	-2.50	0.37	0.604420
5362	dm3.chr2R	19,796,774 – 19,796,894	- - - intron="intron;ID=intron_CG5594:1_CG5594:2;Name=kcc-in;Parent=FBtr0072136,FBtr0072137;parent_type=mRNA" - - - -	7354	19,796,774 – 19,796,894	-	6	120	77.92	-2.03	0.50	0.825074
5363	dm3.chr2R	19,797,983 – 19,798,090	- - - intron="intron;ID=intron_CG5594:2_CG5594:3;Name=kcc-in;Parent=FBtr0072136,FBtr0072137;parent_type=mRNA" - - - -	7355	19,797,983 – 19,798,090	-	11	115	74.97	-1.27	0.56	0.836517
5364	dm3.chr2R	19,802,025 – 19,802,124	- - - intron="intron;ID=intron_CG5594:13_CG5594:14;Name=kcc-in;Parent=FBtr0072136,FBtr0072138,FBtr0072137,FBtr0072139;parent_type=mRNA" - - - -	7356	19,802,025 – 19,802,124	+	5	111	53.91	-0.81	0.50	0.965031
5364	dm3.chr2R	19,802,025 – 19,802,124		7357	19,802,025 – 19,802,124	-	5	111	53.91	-1.01	0.53	0.989587
5365	dm3.chr2R	19,809,099 – 19,809,155	- - - intron="intron;ID=intron_CG5594:13_CG5594:14;Name=kcc-in;Parent=FBtr0072136,FBtr0072138,FBtr0072137,FBtr0072139;parent_type=mRNA" - - - -	7358	19,809,099 – 19,809,155	-	4	57	75.22	-1.07	0.76	0.732005
5366	dm3.chr2R	19,810,138 – 19,810,232	- - CDS="CDS;ID=CDS_CG5594:16_652;Name=kcc-cds;Parent=FBtr0072136,FBtr0072138,FBtr0072137,FBtr0072139;parent_type=mRNA" - - - - -	7359	19,810,138 – 19,810,232	+	13	111	71.50	-1.17	0.72	0.981931
5367	dm3.chr2R	19,820,508 – 19,820,604	- - - intron="intron;ID=intron_CG3725:9_CG3725:10;Name=Ca-P60A-in;Parent=FBtr0072216,FBtr0072217;parent_type=mRNA" - - - -	7360	19,820,508 – 19,820,604	-	5	98	83.57	-1.93	0.71	0.837709
5368	dm3.chr2R	19,821,239 – 19,821,359	- - - - - - - -	7361	19,821,239 – 19,821,359	-	5	120	92.67	-1.41	0.95	0.842924
5369	dm3.chr2R	19,821,915 – 19,822,010	- - - - - - - -	7362	19,821,915 – 19,822,010	+	5	95	91.77	-2.06	0.83	0.843867
5370	dm3.chr2R	19,823,177 – 19,823,336	- - - - - - - -	7363	19,823,177 – 19,823,297	+	12	120	97.71	-2.87	0.88	0.978074
				7364	19,823,177 – 19,823,297	-	12	120	97.71	-2.19	0.93	0.946608
				7365	19,823,217 – 19,823,336	+	12	120	96.68	-2.59	0.96	0.989685
				7366	19,823,217 – 19,823,336	-	12	120	96.68	-2.40	0.90	0.957906
5371	dm3.chr2R	19,828,290 – 19,828,359	- - - intron="intron;ID=intron_FBgn0023477:1_FBgn0023477:2;Name=Tal-in;Parent=FBtr0072141;parent_type=mRNA" - - - -	7367	19,828,290 – 19,828,359	-	11	78	77.57	-2.22	0.55	0.977005
5372	dm3.chr2R	19,844,964 – 19,845,060	- - - - - - - -	7368	19,844,964 – 19,845,060	+	4	122	71.35	-1.31	0.61	0.682607
5372	dm3.chr2R	19,844,964 – 19,845,060	- - - - - - - -	7369	19,844,964 – 19,845,060	-	4	122	71.35	-1.04	0.67	0.622688
5373	dm3.chr2R	19,845,347 – 19,845,452	- - - - - - - -	7370	19,845,347 – 19,845,452	+	7	120	81.92	-3.23	0.52	0.987545
5374	dm3.chr2R	19,876,557 – 19,876,612	- - CDS="CDS;ID=CDS_CG3105:2_658;Name=Pask-cds;Parent=FBtr0072160;parent_type=mRNA" - - - - -	7371	19,876,557 – 19,876,612	+	9	55	78.59	-1.82	0.74	0.977868
5375	dm3.chr2R	19,882,607 – 19,882,709	- - - - - - - -	7372	19,882,607 – 19,882,709	-	5	102	81.29	-2.86	0.86	0.996976
5376	dm3.chr2R	19,895,728 – 19,895,820	- - - intron="intron;ID=intron_FBgn0053519:32_FBgn0053519:31;Name=Unc-89-in;Parent=FBtr0091464,FBtr0113464;parent_type=mRNA" - - - -	7373	19,895,728 – 19,895,820	-	9	118	48.23	-2.31	0.08	0.657709
5377	dm3.chr2R	19,897,302 – 19,897,394	- - CDS="CDS;ID=CDS_FBgn0053519:32_578;Name=Unc-89-cds;Parent=FBtr0113464;parent_type=mRNA" - - - - -	7374	19,897,302 – 19,897,394	+	4	101	63.67	-1.41	0.51	0.855269
5377	dm3.chr2R	19,897,302 – 19,897,394		7375	19,897,302 – 19,897,394	-	4	101	63.67	-2.00	0.44	0.938553
5378	dm3.chr2R	19,915,108 – 19,915,230	- - - - - - - -	7376	19,915,108 – 19,915,230	-	5	124	82.44	-1.61	0.67	0.546991
5379	dm3.chr2R	19,921,365 – 19,921,454	- - - - - - - -	7377	19,921,365 – 19,921,454	-	9	92	88.03	-1.90	0.85	0.937055
5380	dm3.chr2R	19,922,082 – 19,922,178	- - - intron="intron;ID=intron_CG3167:1_CG3167:2;Name=MAN1-in;Parent=FBtr0072166;parent_type=mRNA" - - - -	7378	19,922,082 – 19,922,178	+	7	110	70.43	-1.01	0.51	0.566986
5381	dm3.chr2R	19,925,563 – 19,925,689	- - CDS="CDS;ID=CDS_FBgn0034964:1_596;Name=CG3173-cds;Parent=FBtr0072168;parent_type=mRNA" - - - - -	7379	19,925,563 – 19,925,665	+	12	109	62.03	-0.92	0.38	0.797677
5381	dm3.chr2R	19,925,563 – 19,925,689		7380	19,925,599 – 19,925,689	+	12	93	70.52	-1.10	0.43	0.624329
5382	dm3.chr2R	19,932,480 – 19,932,578	- - - - - - - -	7381	19,932,480 – 19,932,578	+	10	100	71.27	-1.57	0.39	0.804013
5382	dm3.chr2R	19,932,480 – 19,932,578	- - - - - - - -	7382	19,932,480 – 19,932,578	-	10	100	71.27	-1.00	0.45	0.601221
5383	dm3.chr2R	19,943,603 – 19,943,719	- - CDS="CDS;ID=CDS_FBgn0034966:4_578;Name=CG13563-cds;Parent=FBtr0113117;parent_type=mRNA" - - - - -	7383	19,943,603 – 19,943,719	-	7	140	66.30	-1.43	0.52	0.945569
5384	dm3.chr2R	19,947,114 – 19,947,222	- - - - - - - -	7384	19,947,114 – 19,947,222	+	5	108	91.67	-2.00	0.80	0.745856
5385	dm3.chr2R	19,951,368 – 19,951,462	- - - intron="intron;ID=intron_FBgn0025806:1_FBgn0025806:3;Name=Rap2l-in;Parent=FBtr0072177;parent_type=mRNA" - - - -	7385	19,951,368 – 19,951,462	+	6	114	64.97	-1.30	0.55	0.903292
5386	dm3.chr2R	19,956,037 – 19,956,127	- - - - - - - -	7386	19,956,037 – 19,956,127	-	8	105	49.89	-2.46	-0.00	0.536730
5387	dm3.chr2R	19,961,527 – 19,961,673	- - - - - - - -	7387	19,961,527 – 19,961,631	+	8	120	78.25	-2.10	0.69	0.973646
				7388	19,961,527 – 19,961,631	-	8	120	78.25	-2.08	0.63	0.948150
				7389	19,961,559 – 19,961,665	+	8	120	83.05	-2.49	0.59	0.912972
				7390	19,961,559 – 19,961,665	-	8	120	83.05	-2.92	0.58	0.975074
				7391	19,961,562 – 19,961,673	+	8	120	85.87	-2.17	0.66	0.792345
				7392	19,961,562 – 19,961,673	-	8	120	85.87	-2.42	0.53	0.595694
5388	dm3.chr2R	19,995,720 – 19,995,770	- - CDS="CDS;ID=CDS_CG4049:8_543;Name=CG4049-cds;Parent=FBtr0072285;parent_type=mRNA" - - - - -	7393	19,995,720 – 19,995,770	+	6	50	76.40	-1.34	0.85	0.954696
5389	dm3.chr2R	19,997,038 – 19,997,146	- - CDS="CDS;ID=CDS_CG4049:5_543;Name=CG4049-cds;Parent=FBtr0072285;parent_type=mRNA" - - - - -	7394	19,997,038 – 19,997,146	+	5	135	80.48	-1.32	0.76	0.591067
5390	dm3.chr2R	19,998,323 – 19,998,417	- - - - - - - -	7395	19,998,323 – 19,998,417	+	7	94	69.51	-0.89	0.48	0.555929
5391	dm3.chr2R	20,001,988 – 20,002,093	- - - - - - - -	7396	20,001,988 – 20,002,093	+	4	105	67.57	-1.45	0.45	0.647652
5392	dm3.chr2R	20,005,292 – 20,005,383	- - - intron="intron;ID=intron_FBgn0034978:1_FBgn0034978:3;Name=CG3257-in;Parent=FBtr0100568;parent_type=mRNA" - - - -	7397	20,005,292 – 20,005,383	+	6	107	64.88	-0.60	0.52	0.618638
5393	dm3.chr2R	20,027,016 – 20,027,136	- - - - - - - -	7398	20,027,016 – 20,027,136	+	5	120	96.83	-1.39	0.95	0.730541
5394	dm3.chr2R	20,027,815 – 20,027,909	- - - intron="intron;ID=intron_CG3318:1_CG3318:2;Name=Dat-in;Parent=FBtr0072254;parent_type=mRNA" - - - -	7399	20,027,815 – 20,027,909	-	6	100	68.28	-1.30	0.50	0.806928
5395	dm3.chr2R	20,028,578 – 20,028,744	- - - intron="intron;ID=intron_CG3318:1_CG3318:2;Name=Dat-in;Parent=FBtr0072254;parent_type=mRNA" - - - -	7400	20,028,578 – 20,028,744	+	5	174	66.84	-0.75	0.65	0.875185
5396	dm3.chr2R	20,030,363 – 20,030,457	- - - intron="intron;ID=intron_CG3318:1_CG3318:2;Name=Dat-in;Parent=FBtr0072254;parent_type=mRNA" - - - -	7401	20,030,363 – 20,030,457	-	6	115	64.75	-1.97	0.29	0.694352
5397	dm3.chr2R	20,052,891 – 20,052,998	- - - intron="intron;ID=intron_CG3328:1_CG3328:2;Name=CG3328-in;Parent=FBtr0072257;parent_type=mRNA" - - - -	7402	20,052,891 – 20,052,998	-	5	116	73.50	-1.20	0.58	0.500000
5398	dm3.chr2R	20,063,720 – 20,063,820	- - - intron="intron;ID=intron_FBgn0259937:4_FBgn0259937:5;Name=Nop60B-in;Parent=FBtr0072258,FBtr0100213,FBtr0300227,FBtr0300228,FBtr0300229,FBtr0300861;parent_type=mRNA" "Rfam_10.0=RF00291;snoR639;AAST01027501.1/1343-1482\|1.7e-30" "Noncode_2.0=n798_u330_AF097634_snoRNA_Drosophila\|7.0e-33" "unique_Noncode_2.0=u330_snoRNA_Drosophila\|6.1e-33" -	7403	20,063,720 – 20,063,820	+	12	109	68.00	-0.78	0.67	0.975667
5398	dm3.chr2R	20,063,720 – 20,063,820		7404	20,063,720 – 20,063,820	-	12	109	68.00	-0.55	0.69	0.953709
5399	dm3.chr2R	20,071,898 – 20,071,997	- - - intron="intron;ID=intron_FBgn0259937:7_FBgn0259937:9;Name=Nop60B-in;Parent=FBtr0300861;parent_type=mRNA" - - - -	7405	20,071,898 – 20,071,997	+	6	103	53.55	-1.30	0.52	0.997368
5399	dm3.chr2R	20,071,898 – 20,071,997		7406	20,071,898 – 20,071,997	-	6	103	53.55	-1.30	0.61	0.998946
5400	dm3.chr2R	20,091,916 – 20,092,014	- - - intron="intron;ID=intron_FBgn0034990:4_FBgn0034990:2;Name=CG11406-in;Parent=FBtr0072276,FBtr0100169;parent_type=mRNA" - - - -	7407	20,091,916 – 20,092,014	-	4	98	73.69	-1.48	0.62	0.748212
5401	dm3.chr2R	20,094,776 – 20,094,886	- - - intron="intron;ID=intron_FBgn0034990:8_FBgn0034990:5;Name=CG11406-in;Parent=FBtr0100169;parent_type=mRNA" - - - -	7408	20,094,776 – 20,094,886	+	4	120	55.73	-1.44	0.45	0.936206
5402	dm3.chr2R	20,096,922 – 20,097,003	- - - - - - - -	7409	20,096,922 – 20,097,003	+	6	86	63.51	-1.21	0.49	0.946136
5403	dm3.chr2R	20,102,892 – 20,103,006	- - CDS="CDS;ID=CDS_FBgn0050419:1_658;Name=CG30419-cds;Parent=FBtr0072275;parent_type=mRNA" - - - - -	7410	20,102,892 – 20,103,006	+	9	120	77.64	-1.65	0.46	0.500000
5404	dm3.chr2R	20,116,043 – 20,116,133	- - - intron="intron;ID=intron_FBgn0050419:2_FBgn0050419:1;Name=CG30419-in;Parent=FBtr0072275;parent_type=mRNA" - - - -	7411	20,116,043 – 20,116,133	+	4	120	75.40	-1.94	0.66	0.876909
5405	dm3.chr2R	20,116,296 – 20,116,404	- - - intron="intron;ID=intron_FBgn0050419:2_FBgn0050419:1;Name=CG30419-in;Parent=FBtr0072275;parent_type=mRNA" - - - -	7412	20,116,296 – 20,116,404	+	4	110	60.00	-1.00	0.44	0.652315
5406	dm3.chr2R	20,116,717 – 20,116,816	- - CDS="CDS;ID=CDS_FBgn0050419:2_658;Name=CG30419-cds;Parent=FBtr0072275;parent_type=mRNA" - - - - -	7413	20,116,717 – 20,116,816	-	11	117	67.50	-1.16	0.40	0.607332
5407	dm3.chr2R	20,116,851 – 20,117,056	- - - - - - - -	7414	20,116,851 – 20,116,960	+	5	112	67.80	-1.56	0.54	0.952954
5407	dm3.chr2R	20,116,851 – 20,117,056	- - - - - - - -	7415	20,116,960 – 20,117,056	-	9	105	60.49	-1.33	0.30	0.647212
5408	dm3.chr2R	20,127,984 – 20,128,129	- - - - - - - -	7416	20,127,984 – 20,128,089	-	6	117	71.51	-1.10	0.55	0.647047
5408	dm3.chr2R	20,127,984 – 20,128,129	- - - - - - - -	7417	20,128,022 – 20,128,129	-	4	116	65.57	-1.91	0.57	0.985003
5409	dm3.chr2R	20,129,619 – 20,129,724	- - - - - - - -	7418	20,129,619 – 20,129,724	-	6	119	66.51	-0.60	0.53	0.613611
5410	dm3.chr2R	20,133,987 – 20,134,046	- - - intron="intron;ID=intron_FBgn0050418:2_FBgn0050418:3;Name=nord-in;Parent=FBtr0072263;parent_type=mRNA" - - - -	7419	20,133,987 – 20,134,046	+	6	59	99.44	-1.07	1.00	0.701469
5410	dm3.chr2R	20,133,987 – 20,134,046		7420	20,133,987 – 20,134,046	-	6	59	99.44	-2.36	1.00	0.986455
5411	dm3.chr2R	20,135,497 – 20,135,589	- - - intron="intron;ID=intron_FBgn0050418:2_FBgn0050418:3;Name=nord-in;Parent=FBtr0072263;parent_type=mRNA" - - - -	7421	20,135,497 – 20,135,589	-	5	116	71.81	-1.85	0.48	0.754540
5412	dm3.chr2R	20,157,022 – 20,157,142	- - - - - - - -	7422	20,157,022 – 20,157,142	+	4	132	69.47	-1.16	0.67	0.800595
5413	dm3.chr2R	20,160,696 – 20,160,797	- - - - - - - -	7423	20,160,696 – 20,160,792	-	4	96	97.74	-1.30	0.94	0.574242
5413	dm3.chr2R	20,160,696 – 20,160,797	- - - - - - - -	7424	20,160,698 – 20,160,797	-	4	99	96.97	-1.16	0.95	0.551648
5414	dm3.chr2R	20,161,742 – 20,161,834	- - - - - - - -	7425	20,161,742 – 20,161,834	-	9	113	80.01	-1.70	0.57	0.609430
5415	dm3.chr2R	20,163,951 – 20,164,033	- - - intron="intron;ID=intron_CG3385:1_CG3385:2;Name=nvy-in;Parent=FBtr0072267;parent_type=mRNA" - - - -	7426	20,163,951 – 20,164,033	-	10	93	82.63	-1.99	0.64	0.911385
5416	dm3.chr2R	20,171,838 – 20,171,893	- - - intron="intron;ID=intron_CG3385:1_CG3385:2;Name=nvy-in;Parent=FBtr0072267;parent_type=mRNA" - - - -	7427	20,171,838 – 20,171,893	+	3	55	95.15	-1.20	0.95	0.618702
5416	dm3.chr2R	20,171,838 – 20,171,893		7428	20,171,838 – 20,171,893	-	3	55	95.15	-1.35	0.91	0.515658
5417	dm3.chr2R	20,172,890 – 20,172,943	- - - intron="intron;ID=intron_CG3385:2_CG3385:3;Name=nvy-in;Parent=FBtr0072267;parent_type=mRNA" - - - -	7429	20,172,890 – 20,172,943	+	5	53	80.00	-1.51	0.75	0.845759
5418	dm3.chr2R	20,174,212 – 20,174,343	- - - intron="intron;ID=intron_CG3385:2_CG3385:3;Name=nvy-in;Parent=FBtr0072267;parent_type=mRNA" - - - -	7430	20,174,212 – 20,174,303	-	3	91	94.14	-1.02	0.95	0.500000
5418	dm3.chr2R	20,174,212 – 20,174,343		7431	20,174,236 – 20,174,343	-	8	109	82.39	-1.74	0.71	0.880916
5419	dm3.chr2R	20,186,580 – 20,186,701	- - - - - - - -	7432	20,186,580 – 20,186,673	-	5	93	99.14	-1.15	0.98	0.650029
5419	dm3.chr2R	20,186,580 – 20,186,701	- - - - - - - -	7433	20,186,606 – 20,186,701	+	4	95	96.67	-1.41	0.99	0.876711
5420	dm3.chr2R	20,192,693 – 20,192,804	- - - - - - - -	7434	20,192,693 – 20,192,804	-	5	113	85.24	-1.83	0.67	0.514071
5421	dm3.chr2R	20,207,203 – 20,207,302	- - - - - - - -	7435	20,207,203 – 20,207,302	+	7	105	88.79	-1.91	0.70	0.545171
5422	dm3.chr2R	20,214,728 – 20,214,824	- - - - - - - -	7436	20,214,728 – 20,214,824	-	9	108	71.29	-1.27	0.51	0.728362
5423	dm3.chr2R	20,225,187 – 20,225,295	- - - - - - - -	7437	20,225,187 – 20,225,295	+	7	111	56.64	-0.98	0.44	0.965676
5423	dm3.chr2R	20,225,187 – 20,225,295	- - - - - - - -	7438	20,225,187 – 20,225,295	-	7	111	56.64	-1.56	0.52	0.998849
5424	dm3.chr2R	20,225,982 – 20,226,189	- - - - - - - -	7439	20,225,982 – 20,226,091	+	4	111	90.15	-1.66	0.82	0.605007
				7440	20,225,982 – 20,226,091	-	4	111	90.15	-2.13	0.90	0.960842
				7441	20,226,053 – 20,226,163	+	10	120	80.08	-1.75	0.58	0.585666
				7442	20,226,053 – 20,226,163	-	10	120	80.08	-2.37	0.66	0.973128
				7443	20,226,091 – 20,226,189	+	12	112	83.24	-1.98	0.60	0.844888
5425	dm3.chr2R	20,231,609 – 20,231,717	- - CDS="CDS;ID=CDS_FBgn0004101:1_548;Name=bs-cds;Parent=FBtr0072271;parent_type=mRNA" - - - - -	7444	20,231,609 – 20,231,717	+	13	120	79.49	-2.59	0.39	0.882982
5426	dm3.chr2R	20,232,548 – 20,232,643	- - - intron="intron;ID=intron_FBgn0004101:1_FBgn0004101:3;Name=bs-in;Parent=FBtr0290089;parent_type=mRNA" - - - -	7445	20,232,548 – 20,232,643	+	3	95	72.18	-1.57	0.77	0.888580
5427	dm3.chr2R	20,236,350 – 20,236,454	- - - intron="intron;ID=intron_FBgn0004101:2_FBgn0004101:4;Name=bs-in;Parent=FBtr0072271;parent_type=mRNA" - - - -	7446	20,236,350 – 20,236,454	+	5	120	73.26	-4.13	0.45	0.999456
5427	dm3.chr2R	20,236,350 – 20,236,454		7447	20,236,350 – 20,236,454	-	5	120	73.26	-2.51	0.40	0.885673
5428	dm3.chr2R	20,250,548 – 20,250,652	- - - intron="intron;ID=intron_FBgn0004101:2_FBgn0004101:4;Name=bs-in;Parent=FBtr0072271;parent_type=mRNA" - - - -	7448	20,250,548 – 20,250,652	+	7	114	78.45	-1.06	0.72	0.688044
5429	dm3.chr2R	20,251,843 – 20,251,947	- - - intron="intron;ID=intron_FBgn0004101:2_FBgn0004101:4;Name=bs-in;Parent=FBtr0072271;parent_type=mRNA" - - - -	7449	20,251,843 – 20,251,947	-	7	118	64.18	-1.93	0.32	0.748315
5430	dm3.chr2R	20,255,047 – 20,255,097	- - - intron="intron;ID=intron_FBgn0004101:2_FBgn0004101:4;Name=bs-in;Parent=FBtr0072271;parent_type=mRNA" - - - -	7450	20,255,047 – 20,255,097	-	5	50	99.20	-1.63	1.00	0.926260
5431	dm3.chr2R	20,256,009 – 20,256,103	- - - intron="intron;ID=intron_FBgn0004101:2_FBgn0004101:4;Name=bs-in;Parent=FBtr0072271;parent_type=mRNA" - - - -	7451	20,256,009 – 20,256,103	-	11	101	84.97	-2.42	0.48	0.622956
5432	dm3.chr2R	20,261,564 – 20,261,639	FBnoncoding="tRNA;ID=FBtr0100849;Name=tRNA:N5:60C-RA;Parent=FBgn0053537;Dbxref=FlyBase_Annotation_IDs:CR33537-RA;score_text=Weakly" tRNAscann="Asn_chr2R_trna49" - intron="intron;ID=intron_FBgn0004101:2_FBgn0004101:4;Name=bs-in;Parent=FBtr0072271;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB011110628.1/812-884\|4.3e-21" - - -	7452	20,261,564 – 20,261,639	+	13	75	84.61	-1.47	0.75	0.858067
5432	dm3.chr2R	20,261,564 – 20,261,639		7453	20,261,564 – 20,261,639	-	13	75	84.61	-1.10	0.77	0.665860
5433	dm3.chr2R	20,269,653 – 20,269,746	- - - intron="intron;ID=intron_CG4356:6_CG4356:5;Name=mAcR-60C-in;Parent=FBtr0072368;parent_type=mRNA" - - - -	7454	20,269,653 – 20,269,746	+	5	100	91.23	-2.34	0.75	0.814781
5433	dm3.chr2R	20,269,653 – 20,269,746		7455	20,269,653 – 20,269,746	-	5	100	91.23	-2.28	0.72	0.690109
5434	dm3.chr2R	20,273,725 – 20,273,775	- - - intron="intron;ID=intron_CG4356:1_CG4356:2;Name=mAcR-60C-in;Parent=FBtr0072367,FBtr0072368;parent_type=mRNA" - - - -	7456	20,273,725 – 20,273,775	+	10	51	95.35	-2.32	0.95	0.981846
5434	dm3.chr2R	20,273,725 – 20,273,775		7457	20,273,725 – 20,273,775	-	10	51	95.35	-2.15	0.91	0.946084
5435	dm3.chr2R	20,273,906 – 20,274,016	- - - intron="intron;ID=intron_CG4356:1_CG4356:2;Name=mAcR-60C-in;Parent=FBtr0072367,FBtr0072368;parent_type=mRNA" - - - -	7458	20,273,906 – 20,274,007	+	7	113	79.17	-1.37	0.73	0.808982
5435	dm3.chr2R	20,273,906 – 20,274,016		7459	20,273,910 – 20,274,016	+	7	118	78.09	-1.78	0.58	0.821619
5436	dm3.chr2R	20,280,899 – 20,280,994	- - - - - - - -	7460	20,280,899 – 20,280,994	-	6	100	74.97	-3.08	0.64	0.999070
5437	dm3.chr2R	20,286,235 – 20,286,329	- - CDS="CDS;ID=CDS_FBgn0035001:9_580;Name=slik-cds;Parent=FBtr0072363,FBtr0072364,FBtr0100470,FBtr0290019;parent_type=mRNA" - - - - -	7461	20,286,235 – 20,286,329	+	7	94	72.57	-1.46	0.53	0.912310
5438	dm3.chr2R	20,286,632 – 20,286,733	- - CDS="CDS;ID=CDS_FBgn0035001:10_580;Name=slik-cds;Parent=FBtr0072363,FBtr0072364,FBtr0100470,FBtr0290019;parent_type=mRNA" - - - - -	7462	20,286,632 – 20,286,733	+	14	110	76.81	-1.15	0.71	0.950779
5438	dm3.chr2R	20,286,632 – 20,286,733		7463	20,286,632 – 20,286,733	-	14	110	76.81	-0.74	0.67	0.766529
5439	dm3.chr2R	20,296,514 – 20,296,637	- - CDS="CDS;ID=CDS_CG4545:3_503;Name=SerT-cds;Parent=FBtr0072362;parent_type=mRNA" - - - - -	7464	20,296,514 – 20,296,634	-	14	120	78.06	-1.94	0.39	0.623594
5439	dm3.chr2R	20,296,514 – 20,296,637		7465	20,296,517 – 20,296,637	-	14	120	77.95	-2.09	0.39	0.752839
5440	dm3.chr2R	20,296,855 – 20,296,954	- - - - - - - -	7466	20,296,855 – 20,296,954	+	4	99	73.77	-1.51	0.69	0.897856
5440	dm3.chr2R	20,296,855 – 20,296,954	- - - - - - - -	7467	20,296,855 – 20,296,954	-	4	99	73.77	-1.36	0.58	0.551419
5441	dm3.chr2R	20,304,212 – 20,304,305	- - CDS="CDS;ID=CDS_FBgn0259210:5_592;Name=prom-cds;Parent=FBtr0299700;parent_type=mRNA" - - - - -	7468	20,304,212 – 20,304,305	+	7	100	68.09	-1.88	0.33	0.634792
5442	dm3.chr2R	20,314,090 – 20,314,140	- - - intron="intron;ID=intron_FBgn0259210:20_FBgn0259210:19;Name=prom-in;Parent=FBtr0299698,FBtr0299699,FBtr0299700;parent_type=mRNA" - - - -	7469	20,314,090 – 20,314,140	+	4	50	97.00	-2.09	0.98	0.972220
5442	dm3.chr2R	20,314,090 – 20,314,140		7470	20,314,090 – 20,314,140	-	4	50	97.00	-1.88	1.00	0.968048
5443	dm3.chr2R	20,315,092 – 20,315,240	- - - intron="intron;ID=intron_FBgn0259210:20_FBgn0259210:19;Name=prom-in;Parent=FBtr0299698,FBtr0299699,FBtr0299700;parent_type=mRNA" - - - -	7471	20,315,092 – 20,315,240	+	4	153	68.00	-1.69	0.48	0.824448
5444	dm3.chr2R	20,353,746 – 20,353,847	- - - intron="intron;ID=intron_FBgn0035010:1_FBgn0035010:2;Name=CG13579-in;Parent=FBtr0072298;parent_type=mRNA" - - - -	7472	20,353,746 – 20,353,847	-	3	102	98.04	-1.94	0.92	0.855609
5445	dm3.chr2R	20,355,693 – 20,355,782	- - - intron="intron;ID=intron_FBgn0035010:1_FBgn0035010:2;Name=CG13579-in;Parent=FBtr0072298;parent_type=mRNA" - - - -	7473	20,355,693 – 20,355,782	+	5	90	72.37	-1.56	0.45	0.565157
5445	dm3.chr2R	20,355,693 – 20,355,782		7474	20,355,693 – 20,355,782	-	5	90	72.37	-1.66	0.43	0.567989
5446	dm3.chr2R	20,364,860 – 20,364,943	- - - - - - - -	7475	20,364,860 – 20,364,943	+	6	84	65.12	-1.29	0.42	0.836806
5446	dm3.chr2R	20,364,860 – 20,364,943	- - - - - - - -	7476	20,364,860 – 20,364,943	-	6	84	65.12	-0.69	0.49	0.655289
5447	dm3.chr2R	20,368,263 – 20,368,313	- - - - - - - -	7477	20,368,263 – 20,368,313	-	4	50	93.67	-2.65	0.85	0.964323
5448	dm3.chr2R	20,368,744 – 20,368,837	- - - - - - - -	7478	20,368,744 – 20,368,837	+	4	95	79.89	-1.33	0.77	0.638679
5449	dm3.chr2R	20,377,464 – 20,377,554	- - - - - - - -	7479	20,377,464 – 20,377,554	-	3	90	80.71	-2.53	0.65	0.909240
5450	dm3.chr2R	20,385,468 – 20,385,518	- - - - - - - -	7480	20,385,468 – 20,385,518	+	3	51	94.74	-1.54	0.95	0.834785
5451	dm3.chr2R	20,386,786 – 20,386,882	- - - - - - - -	7481	20,386,786 – 20,386,882	+	7	112	60.64	-0.85	0.47	0.754741
5451	dm3.chr2R	20,386,786 – 20,386,882	- - - - - - - -	7482	20,386,786 – 20,386,882	-	7	112	60.64	-1.09	0.61	0.983624
5452	dm3.chr2R	20,389,136 – 20,389,314	- - - intron="intron;ID=intron_FBgn0017556:2_FBgn0017556:1;Name=Pros28.1B-in;Parent=FBtr0072350;parent_type=mRNA" - - - -	7483	20,389,136 – 20,389,314	+	5	195	77.32	-1.80	0.51	0.525231
5452	dm3.chr2R	20,389,136 – 20,389,314		7484	20,389,136 – 20,389,314	-	5	195	77.32	-2.08	0.56	0.877145
5453	dm3.chr2R	20,401,525 – 20,401,624	- - - intron="intron;ID=intron_CG4589:2_CG4589:3;Name=Letm1-in;Parent=FBtr0072347,FBtr0072348,FBtr0072349;parent_type=mRNA" - - - -	7485	20,401,525 – 20,401,624	+	6	115	57.41	-1.41	0.37	0.870829
5454	dm3.chr2R	20,412,817 – 20,412,920	- - CDS="CDS;ID=CDS_FBgn0035016:4_686;Name=CG4612-cds;Parent=FBtr0072346,FBtr0306136,FBtr0306137;parent_type=mRNA" - - - - -	7486	20,412,817 – 20,412,920	-	13	115	73.00	-1.96	0.30	0.500000
5455	dm3.chr2R	20,413,577 – 20,413,683	- - - - - - - -	7487	20,413,577 – 20,413,683	+	7	118	63.32	-1.06	0.37	0.564255
5455	dm3.chr2R	20,413,577 – 20,413,683	- - - - - - - -	7488	20,413,577 – 20,413,683	-	7	118	63.32	-2.36	0.45	0.998699
5456	dm3.chr2R	20,427,085 – 20,427,205	- - - intron="intron;ID=intron_FBgn0035021:7_FBgn0035021:6;Name=CG4622-in;Parent=FBtr0300490;parent_type=mRNA" - - - -	7489	20,427,085 – 20,427,205	-	8	120	81.72	-1.57	0.62	0.500000
5457	dm3.chr2R	20,482,469 – 20,482,602	- - - - - - - -	7490	20,482,469 – 20,482,564	+	6	107	81.55	-2.24	0.55	0.788253
5457	dm3.chr2R	20,482,469 – 20,482,602	- - - - - - - -	7491	20,482,503 – 20,482,602	-	6	105	85.81	-1.91	0.67	0.641794
5458	dm3.chr2R	20,487,845 – 20,487,947	- - - - - - - -	7492	20,487,845 – 20,487,947	-	12	114	69.02	-1.43	0.37	0.698214
5459	dm3.chr2R	20,490,850 – 20,490,915	- - CDS="CDS;ID=CDS_CG3565:3_502;Name=CG3565-cds;Parent=FBtr0072316;parent_type=mRNA" - - - - -	7493	20,490,850 – 20,490,915	-	5	65	92.00	-0.55	1.02	0.622187
5460	dm3.chr2R	20,499,020 – 20,499,189	- - - intron="intron;ID=intron_FBgn0035040:3_FBgn0035040:2;Name=CG4741-in;Parent=FBtr0072337;parent_type=mRNA" - - - -	7494	20,499,020 – 20,499,189	+	4	172	76.08	-2.20	0.43	0.527598
5461	dm3.chr2R	20,524,815 – 20,524,906	- - - - - - - -	7495	20,524,815 – 20,524,906	+	11	98	81.31	-1.90	0.55	0.731346
5461	dm3.chr2R	20,524,815 – 20,524,906	- - - - - - - -	7496	20,524,815 – 20,524,906	-	11	98	81.31	-1.57	0.57	0.500000
5462	dm3.chr2R	20,542,355 – 20,542,411	- - - - - - - -	7497	20,542,355 – 20,542,411	+	7	58	66.50	-0.88	0.71	0.983017
5462	dm3.chr2R	20,542,355 – 20,542,411	- - - - - - - -	7498	20,542,355 – 20,542,411	-	7	58	66.50	-0.88	0.80	0.985784
5463	dm3.chr2R	20,544,504 – 20,544,594	- - - - - - - -	7499	20,544,504 – 20,544,594	-	5	95	71.61	-1.23	0.54	0.611151
5464	dm3.chr2R	20,552,442 – 20,552,537	- - CDS="CDS;ID=CDS_FBgn0035046:7_586;Name=CG3683-cds;Parent=FBtr0301036;parent_type=mRNA" - - - - -	7500	20,552,442 – 20,552,537	+	15	110	76.90	-1.57	0.59	0.922718
5465	dm3.chr2R	20,556,987 – 20,557,068	- - - intron="intron;ID=intron_CG3691:1_CG3691:2;Name=Pof-in;Parent=FBtr0072327;parent_type=mRNA" - - - -	7501	20,556,987 – 20,557,068	-	6	96	70.74	-1.68	0.71	0.987997
5466	dm3.chr2R	20,565,550 – 20,565,650	- - - intron="intron;ID=intron_FBgn0035049:9_FBgn0035049:8;Name=Mmp1-in;Parent=FBtr0273263,FBtr0273264,FBtr0304005,FBtr0304006,FBtr0304007,FBtr0304008,FBtr0304009,FBtr0304010,FBtr0304011;parent_type=mRNA" - - - -	7502	20,565,550 – 20,565,650	+	7	118	64.30	-0.80	0.51	0.573244
5467	dm3.chr2R	20,565,870 – 20,565,946	- - - intron="intron;ID=intron_FBgn0035049:9_FBgn0035049:8;Name=Mmp1-in;Parent=FBtr0273263,FBtr0273264,FBtr0304005,FBtr0304006,FBtr0304007,FBtr0304008,FBtr0304009,FBtr0304010,FBtr0304011;parent_type=mRNA" - - - -	7503	20,565,870 – 20,565,946	-	4	76	74.72	-1.52	0.56	0.511646
5468	dm3.chr2R	20,567,407 – 20,567,500	- - - intron="intron;ID=intron_FBgn0035049:9_FBgn0035049:8;Name=Mmp1-in;Parent=FBtr0273263,FBtr0273264,FBtr0304005,FBtr0304006,FBtr0304007,FBtr0304008,FBtr0304009,FBtr0304010,FBtr0304011;parent_type=mRNA" - - - -	7504	20,567,407 – 20,567,500	+	7	113	69.70	-2.59	0.45	0.994181
5469	dm3.chr2R	20,568,641 – 20,568,752	- - - intron="intron;ID=intron_FBgn0035049:9_FBgn0035049:8;Name=Mmp1-in;Parent=FBtr0273263,FBtr0273264,FBtr0304005,FBtr0304006,FBtr0304007,FBtr0304008,FBtr0304009,FBtr0304010,FBtr0304011;parent_type=mRNA" - - - -	7505	20,568,641 – 20,568,752	-	5	118	62.15	-1.94	0.38	0.957413
5470	dm3.chr2R	20,584,180 – 20,584,271	- - - - - - - -	7506	20,584,180 – 20,584,271	+	6	99	74.65	-1.16	0.59	0.563581
5471	dm3.chr2R	20,587,304 – 20,587,405	- - CDS="CDS;ID=CDS_CG33988:6_548;Name=CG33988-cds;Parent=FBtr0100033;parent_type=mRNA" - - - - -	7507	20,587,304 – 20,587,405	+	12	120	67.91	-1.52	0.35	0.661138
5471	dm3.chr2R	20,587,304 – 20,587,405		7508	20,587,304 – 20,587,405	-	12	120	67.91	-2.23	0.43	0.993353
5472	dm3.chr2R	20,590,730 – 20,590,829	- - - intron="intron;ID=intron_CG33988:3_CG33988:4;Name=CG33988-in;Parent=FBtr0100033;parent_type=mRNA" - - - -	7509	20,590,730 – 20,590,829	-	6	117	75.95	-1.39	0.58	0.512088
5473	dm3.chr2R	20,594,990 – 20,595,082	- - - intron="intron;ID=intron_CG33988:3_CG33988:4;Name=CG33988-in;Parent=FBtr0100033;parent_type=mRNA" - - - -	7510	20,594,990 – 20,595,082	-	10	114	67.75	-1.53	0.52	0.981643
5474	dm3.chr2R	20,597,532 – 20,597,644	- - - intron="intron;ID=intron_CG33988:3_CG33988:4;Name=CG33988-in;Parent=FBtr0100033;parent_type=mRNA" - - - -	7511	20,597,532 – 20,597,644	-	5	112	93.93	-1.72	0.86	0.676728
5475	dm3.chr2R	20,605,291 – 20,605,379	- - - intron="intron;ID=intron_CG33988:2_CG33988:3;Name=CG33988-in;Parent=FBtr0100033;parent_type=mRNA" - - - -	7512	20,605,291 – 20,605,379	+	5	112	73.36	-1.80	0.75	0.970734
5476	dm3.chr2R	20,606,776 – 20,606,871	- - - intron="intron;ID=intron_CG33988:2_CG33988:3;Name=CG33988-in;Parent=FBtr0100033;parent_type=mRNA" - - - -	7513	20,606,776 – 20,606,871	-	5	95	82.00	-1.79	0.64	0.667304
5477	dm3.chr2R	20,608,104 – 20,608,199	- - - intron="intron;ID=intron_CG33988:2_CG33988:3;Name=CG33988-in;Parent=FBtr0100033;parent_type=mRNA" - - - -	7514	20,608,104 – 20,608,199	+	4	117	69.95	-1.79	0.45	0.500000
5478	dm3.chr2R	20,609,899 – 20,610,014	- - - intron="intron;ID=intron_CG33988:2_CG33988:3;Name=CG33988-in;Parent=FBtr0100033;parent_type=mRNA" - - - -	7515	20,609,899 – 20,610,014	+	5	120	90.80	-1.09	0.93	0.611363
5479	dm3.chr2R	20,615,258 – 20,615,364	- - - intron="intron;ID=intron_CG33988:1_CG33988:2;Name=CG33988-in;Parent=FBtr0100033;parent_type=mRNA" - - - -	7516	20,615,258 – 20,615,364	-	3	106	83.28	-1.98	0.87	0.950980
5480	dm3.chr2R	20,615,696 – 20,615,773	- - - intron="intron;ID=intron_CG33988:1_CG33988:2;Name=CG33988-in;Parent=FBtr0100033;parent_type=mRNA" - - - -	7517	20,615,696 – 20,615,773	-	3	87	61.15	-1.19	0.56	0.799620
5481	dm3.chr2R	20,622,648 – 20,622,774	- - - intron="intron;ID=intron_CG33988:1_CG33988:2;Name=CG33988-in;Parent=FBtr0100033;parent_type=mRNA" - - - -	7518	20,622,648 – 20,622,774	+	3	128	48.77	-1.28	0.41	0.863055
5482	dm3.chr2R	20,630,142 – 20,630,216	- - - - - - - -	7519	20,630,142 – 20,630,216	-	12	74	92.93	-2.08	0.85	0.902847
5483	dm3.chr2R	20,636,207 – 20,636,317	- - - intron="intron;ID=intron_CG30421:1_CG30421:2;Name=CG30421-in;Parent=FBtr0072369;parent_type=mRNA" - - - -	7520	20,636,207 – 20,636,317	+	6	113	77.77	-2.00	0.45	0.636795
5484	dm3.chr2R	20,684,949 – 20,685,043	- - - - - - - -	7521	20,684,949 – 20,685,043	-	6	107	62.26	-1.26	0.32	0.505727
5485	dm3.chr2R	20,721,131 – 20,721,211	- - CDS="CDS;ID=CDS_FBgn0000157:6_502;Name=Dll-cds;Parent=FBtr0072378,FBtr0072379;parent_type=mRNA" - - - - -	7522	20,721,131 – 20,721,211	-	13	87	80.61	-1.17	0.62	0.537961
5486	dm3.chr2R	20,727,310 – 20,727,422	- - - - - - - -	7523	20,727,310 – 20,727,402	+	11	99	86.19	-1.52	0.78	0.713923
				7524	20,727,310 – 20,727,402	-	11	99	86.19	-2.30	0.61	0.808980
				7525	20,727,325 – 20,727,422	-	8	106	84.69	-1.84	0.62	0.590027
5487	dm3.chr2R	20,742,421 – 20,742,514	- - - - - - - -	7526	20,742,421 – 20,742,514	+	10	116	78.58	-2.14	0.73	0.986593
5488	dm3.chr2R	20,746,717 – 20,746,864	- - - - - - - -	7527	20,746,717 – 20,746,826	-	12	120	85.82	-1.96	0.66	0.776957
5488	dm3.chr2R	20,746,717 – 20,746,864	- - - - - - - -	7528	20,746,746 – 20,746,864	-	12	120	95.39	-2.27	0.83	0.866122
5489	dm3.chr2R	20,784,460 – 20,784,551	- - - intron="intron;ID=intron_FBgn0085434:5_FBgn0085434:6;Name=NaCP60E-in;Parent=FBtr0303040,FBtr0112670;parent_type=mRNA" - - - -	7529	20,784,460 – 20,784,551	+	7	106	61.39	-1.26	0.39	0.751182
5489	dm3.chr2R	20,784,460 – 20,784,551		7530	20,784,460 – 20,784,551	-	7	106	61.39	-1.57	0.39	0.911012
5490	dm3.chr2R	20,788,120 – 20,788,177	- - - - - - - -	7531	20,788,120 – 20,788,177	-	6	62	70.57	-0.70	0.63	0.609379
5491	dm3.chr2R	20,802,193 – 20,802,505	- - CDS="CDS;ID=CDS_FBgn0085434:26_649;Name=NaCP60E-cds;Parent=FBtr0303040,FBtr0112670;parent_type=mRNA" - - - - -	7532	20,802,193 – 20,802,313	+	15	120	88.24	-1.69	0.68	0.560495
				7533	20,802,193 – 20,802,313	-	15	120	88.24	-2.62	0.82	0.991627
				7534	20,802,233 – 20,802,353	+	15	120	88.89	-2.66	0.69	0.967149
				7535	20,802,233 – 20,802,353	-	15	120	88.89	-2.74	0.70	0.976870
				7536	20,802,273 – 20,802,389	+	15	120	88.00	-3.02	0.74	0.993776
				7537	20,802,273 – 20,802,389	-	15	120	88.00	-3.45	0.74	0.997646
				7538	20,802,389 – 20,802,505	+	15	120	90.14	-2.40	0.81	0.971201
				7539	20,802,389 – 20,802,505	-	15	120	90.14	-2.53	0.72	0.945710
5492	dm3.chr2R	20,802,757 – 20,802,851	- - - intron="intron;ID=intron_FBgn0085434:27_FBgn0085434:28;Name=NaCP60E-in;Parent=FBtr0303040,FBtr0112670,FBtr0304799;parent_type=mRNA" - - - -	7540	20,802,757 – 20,802,851	+	12	106	61.08	-0.29	0.47	0.751881
5493	dm3.chr2R	20,812,659 – 20,812,785	- - - intron="intron;ID=intron_CG15860:1_CG15860:2;Name=pain-in;Parent=FBtr0072417;parent_type=mRNA" - - - -	7541	20,812,659 – 20,812,785	-	12	153	69.76	-1.02	0.52	0.799914
5494	dm3.chr2R	20,830,820 – 20,830,886	- - - - - - - -	7542	20,830,820 – 20,830,886	+	3	66	74.86	-1.19	0.95	0.911253
5495	dm3.chr2R	20,831,475 – 20,831,581	- - - intron="intron;ID=intron_CG15861:1_CG15861:2;Name=CG15861-in;Parent=FBtr0072410;parent_type=mRNA" - - - -	7543	20,831,475 – 20,831,581	+	7	106	62.73	-0.95	0.41	0.669925
5496	dm3.chr2R	20,846,676 – 20,846,778	- - - - - - - -	7544	20,846,676 – 20,846,778	-	8	120	66.13	-0.74	0.51	0.619005
5497	dm3.chr2R	20,847,448 – 20,847,577	- - - - - - - -	7545	20,847,448 – 20,847,577	+	8	140	63.33	-2.87	0.40	0.999458
5497	dm3.chr2R	20,847,448 – 20,847,577	- - - - - - - -	7546	20,847,448 – 20,847,577	-	8	140	63.33	-2.38	0.26	0.947769
5498	dm3.chr2R	20,850,084 – 20,850,191	- - - - - - - -	7547	20,850,084 – 20,850,191	-	5	110	76.87	-1.62	0.56	0.626330
5499	dm3.chr2R	20,868,361 – 20,868,470	- - - intron="intron;ID=intron_FBgn0010435:8_FBgn0010435:7;Name=emp-in;Parent=FBtr0072402;parent_type=mRNA" - - - -	7548	20,868,361 – 20,868,470	+	3	109	95.11	-2.39	0.92	0.967341
5500	dm3.chr2R	20,879,836 – 20,879,956	- - CDS="CDS;ID=CDS_FBgn0005634:4_644;Name=zip-cds;Parent=FBtr0100466,FBtr0302574;parent_type=mRNA" - - - - -	7549	20,879,836 – 20,879,956	+	14	120	78.42	-3.55	0.22	0.931324
5501	dm3.chr2R	20,888,054 – 20,888,145	- - - intron="intron;ID=intron_FBgn0005634:13_FBgn0005634:12;Name=zip-in;Parent=FBtr0072398,FBtr0072399,FBtr0100466,FBtr0100467,FBtr0302572,FBtr0302573,FBtr0302574,FBtr0302575;parent_type=mRNA" - - - -	7550	20,888,054 – 20,888,145	-	7	108	72.81	-2.02	0.37	0.604584
5502	dm3.chr2R	20,899,003 – 20,899,130	- - - - - - - -	7551	20,899,003 – 20,899,130	+	5	131	73.51	-1.49	0.51	0.574883
5502	dm3.chr2R	20,899,003 – 20,899,130	- - - - - - - -	7552	20,899,003 – 20,899,130	-	5	131	73.51	-1.70	0.56	0.870343
5503	dm3.chr2R	20,932,663 – 20,932,781	- - - intron="intron;ID=intron_CG2692:3_CG2692:4;Name=gsb-n-in;Parent=FBtr0072461;parent_type=mRNA" - - - -	7553	20,932,663 – 20,932,781	+	12	121	76.31	-1.65	0.44	0.593139
5504	dm3.chr2R	20,935,293 – 20,935,391	- - - intron="intron;ID=intron_CG2692:3_CG2692:4;Name=gsb-n-in;Parent=FBtr0072461;parent_type=mRNA" - - - -	7554	20,935,293 – 20,935,391	+	11	111	77.20	-2.83	0.50	0.992591
5505	dm3.chr2R	20,943,255 – 20,943,367	- - - - - - - -	7555	20,943,255 – 20,943,367	-	11	119	96.18	-0.74	1.01	0.629668
5506	dm3.chr2R	20,948,716 – 20,948,780	- - - - - - - -	7556	20,948,716 – 20,948,780	-	6	64	73.93	-1.29	0.55	0.720726
5507	dm3.chr2R	20,954,107 – 20,954,206	- - - - - - - -	7557	20,954,107 – 20,954,206	+	12	114	81.80	-2.15	0.68	0.968928
5508	dm3.chr2R	20,964,287 – 20,964,362	FBnoncoding="tRNA;ID=FBtr0072446;Name=tRNA:CR30199-RA;Parent=FBgn0050199;Alias=CR30199-RA;Dbxref=FlyBase_Annotation_IDs:CR30199-RA;score_text=Weakly" tRNAscann="Ala_chr2R_trna51" - intron="intron;ID=intron_FBgn0004919:9_FBgn0004919:8;Name=gol-in;Parent=FBtr0072459,FBtr0300178,FBtr0300179,FBtr0306330;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPP01019771.1/35742-35813\|2.7e-22" - - -	7558	20,964,287 – 20,964,362	+	12	84	89.53	-1.76	1.01	0.984187
5508	dm3.chr2R	20,964,287 – 20,964,362		7559	20,964,287 – 20,964,362	-	12	84	89.53	-1.01	0.94	0.737890
5509	dm3.chr2R	20,970,606 – 20,970,697	- - - intron="intron;ID=intron_FBgn0004919:11_FBgn0004919:10;Name=gol-in;Parent=FBtr0072459,FBtr0300178,FBtr0300179,FBtr0306330;parent_type=mRNA" - - - -	7560	20,970,606 – 20,970,697	+	3	97	77.85	-1.36	0.85	0.826007
5510	dm3.chr2R	20,974,500 – 20,974,601	- - CDS="CDS;ID=CDS_FBgn0003715:1_509;Name=CG16778-cds;Parent=FBtr0072458;parent_type=mRNA" - - - - -	7561	20,974,500 – 20,974,601	+	11	108	73.48	-2.58	0.41	0.987668
5511	dm3.chr2R	20,982,017 – 20,982,121	- - CDS="CDS;ID=CDS_FBgn0003715:3_509;Name=CG16778-cds;Parent=FBtr0072458;parent_type=mRNA" - - - - -	7562	20,982,017 – 20,982,121	+	8	113	74.28	-1.97	0.39	0.770507
5512	dm3.chr2R	20,982,183 – 20,982,291	- - CDS="CDS;ID=CDS_FBgn0003715:3_509;Name=CG16778-cds;Parent=FBtr0072458;parent_type=mRNA" - - - - -	7563	20,982,183 – 20,982,291	+	11	111	82.54	-1.80	0.64	0.865612
5512	dm3.chr2R	20,982,183 – 20,982,291		7564	20,982,183 – 20,982,291	-	11	111	82.54	-2.76	0.66	0.994351
5513	dm3.chr2R	20,997,453 – 20,997,553	- - - - - - - -	7565	20,997,453 – 20,997,553	+	12	118	75.63	-1.71	0.62	0.938925
5513	dm3.chr2R	20,997,453 – 20,997,553	- - - - - - - -	7566	20,997,453 – 20,997,553	-	12	118	75.63	-1.61	0.61	0.904875
5514	dm3.chr2R	21,002,750 – 21,002,888	- - - - - - - -	7567	21,002,750 – 21,002,848	-	6	106	84.17	-1.71	0.85	0.926874
5514	dm3.chr2R	21,002,750 – 21,002,888	- - - - - - - -	7568	21,002,788 – 21,002,888	+	6	112	84.68	-1.40	0.79	0.633107
5515	dm3.chr2R	21,014,097 – 21,014,220	- - - - - - - -	7569	21,014,097 – 21,014,189	+	4	92	72.22	-1.74	0.50	0.634924
				7570	21,014,097 – 21,014,189	-	4	92	72.22	-2.81	0.66	0.997551
				7571	21,014,128 – 21,014,220	+	8	99	51.32	-2.94	-0.00	0.746315
5516	dm3.chr2R	21,014,304 – 21,014,409	- - - - - - - -	7572	21,014,304 – 21,014,409	-	12	118	74.47	-1.32	0.46	0.601573
5517	dm3.chr2R	21,029,655 – 21,029,720	- - - - - - - -	7573	21,029,655 – 21,029,720	+	4	65	53.87	-1.08	0.62	0.994993
5517	dm3.chr2R	21,029,655 – 21,029,720	- - - - - - - -	7574	21,029,655 – 21,029,720	-	4	65	53.87	-0.95	0.67	0.994548
5518	dm3.chr2R	21,067,238 – 21,067,342	- - - - - - - -	7575	21,067,238 – 21,067,342	-	6	104	82.18	-2.18	0.71	0.962534
5519	dm3.chr3LHet	7,803 – 7,865	- - - - - - - -	7576	7,803 – 7,865	+	3	62	61.83	-1.82	0.57	0.982850
5519	dm3.chr3LHet	7,803 – 7,865	- - - - - - - -	7577	7,803 – 7,865	-	3	62	61.83	-1.27	0.51	0.762605
5520	dm3.chr3LHet	12,115 – 12,227	- - - - - - - -	7578	12,115 – 12,227	-	4	115	74.30	-1.48	0.67	0.821991
5521	dm3.chr3LHet	25,939 – 26,021	- - - - - - - -	7579	25,939 – 26,021	-	4	84	57.68	-1.36	0.41	0.903611
5522	dm3.chr3LHet	44,782 – 44,857	- - - - - - - -	7580	44,782 – 44,857	+	6	76	68.34	-1.49	0.58	0.984226
5523	dm3.chr3LHet	59,118 – 59,239	- - - - - - - -	7581	59,118 – 59,239	-	3	123	62.67	-1.98	0.34	0.506067
5524	dm3.chr3LHet	73,352 – 73,449	- - - - - - - -	7582	73,352 – 73,449	+	4	105	54.02	-1.25	0.34	0.671157
5525	dm3.chr3LHet	86,168 – 86,251	- - - - - - - -	7583	86,168 – 86,251	+	3	85	54.55	-1.00	0.44	0.618693
5525	dm3.chr3LHet	86,168 – 86,251	- - - - - - - -	7584	86,168 – 86,251	-	3	85	54.55	-0.84	0.48	0.653308
5526	dm3.chr3LHet	169,942 – 170,093	- - - - - - - -	7585	169,942 – 170,053	+	3	118	58.55	-3.25	0.18	0.880043
				7586	169,942 – 170,053	-	3	118	58.55	-2.49	0.24	0.665841
				7587	169,975 – 170,093	-	3	118	60.45	-2.22	0.34	0.882119
5527	dm3.chr3LHet	171,704 – 171,793	- - - - - - - -	7588	171,704 – 171,793	+	4	97	59.15	-2.76	0.22	0.904051
5528	dm3.chr3LHet	195,297 – 195,348	- - - - - - - -	7589	195,297 – 195,348	+	3	51	62.75	-1.29	0.59	0.894982
5529	dm3.chr3LHet	207,439 – 207,559	- - - - - - - -	7590	207,439 – 207,559	+	10	120	99.83	-2.39	1.00	0.986598
5529	dm3.chr3LHet	207,439 – 207,559	- - - - - - - -	7591	207,439 – 207,559	-	10	120	99.83	-1.81	0.99	0.937830
5530	dm3.chr3LHet	209,392 – 209,446	- - CDS="CDS;ID=CDS_CG17594:209156-209624_1058;Name=scro-cds;Parent=FBtr0113750,FBtr0113751,FBtr0113752;parent_type=mRNA" - - - - -	7592	209,392 – 209,446	+	10	54	78.56	-1.52	0.76	0.970685
5531	dm3.chr3LHet	231,715 – 231,765	- - - - - - - -	7593	231,715 – 231,765	-	6	56	83.08	-1.70	0.69	0.670859
5532	dm3.chr3LHet	258,597 – 258,671	- - - - - - - -	7594	258,597 – 258,671	-	6	74	82.70	-2.80	0.76	0.994937
5533	dm3.chr3LHet	275,634 – 275,710	- - - - - - - -	7595	275,634 – 275,710	-	4	82	54.58	-0.99	0.44	0.812282
5534	dm3.chr3LHet	288,573 – 288,638	- - - - - - - -	7596	288,573 – 288,638	-	5	65	55.16	-1.55	0.34	0.951871
5535	dm3.chr3LHet	326,343 – 326,413	- - - - - - - -	7597	326,343 – 326,413	-	3	70	52.86	-0.46	0.64	0.889027
5536	dm3.chr3LHet	394,954 – 395,096	- - - - - - - -	7598	394,954 – 395,062	-	6	111	59.42	-1.61	0.32	0.860890
				7599	394,988 – 395,096	+	3	108	91.67	-1.79	0.86	0.740021
				7600	394,988 – 395,096	-	3	108	91.67	-2.74	0.85	0.976010
5537	dm3.chr3LHet	408,000 – 408,052	- - - - - - - -	7601	408,000 – 408,052	+	5	52	90.38	-1.29	0.89	0.612144
5538	dm3.chr3LHet	410,575 – 410,626	- - - - - - - -	7602	410,575 – 410,626	+	6	52	75.71	-1.14	0.70	0.822395
5539	dm3.chr3LHet	416,128 – 416,218	- - - - - - - -	7603	416,128 – 416,218	+	3	91	62.50	-1.27	0.56	0.812563
5540	dm3.chr3LHet	434,694 – 434,761	- - - - - - - -	7604	434,694 – 434,761	-	4	71	58.21	-0.30	0.54	0.597963
5541	dm3.chr3LHet	438,804 – 438,956	- - - - - - - -	7605	438,804 – 438,919	+	5	120	89.39	-3.50	0.74	0.994077
				7606	438,804 – 438,919	-	5	120	89.39	-3.02	0.75	0.982033
				7607	438,839 – 438,956	+	5	120	87.15	-2.67	0.78	0.979647
				7608	438,839 – 438,956	-	5	120	87.15	-2.01	0.71	0.699247
5542	dm3.chr3LHet	439,842 – 439,945	- - - - - - - -	7609	439,842 – 439,945	+	5	113	69.91	-2.71	0.55	0.997904
5542	dm3.chr3LHet	439,842 – 439,945	- - - - - - - -	7610	439,842 – 439,945	-	5	113	69.91	-1.70	0.60	0.970617
5543	dm3.chr3LHet	482,938 – 483,043	- - - - - - - -	7611	482,938 – 483,043	+	3	105	56.73	-3.50	0.15	0.921048
5543	dm3.chr3LHet	482,938 – 483,043	- - - - - - - -	7612	482,938 – 483,043	-	3	105	56.73	-3.06	0.19	0.874429
5544	dm3.chr3LHet	486,108 – 486,220	- - - - - - - -	7613	486,108 – 486,220	-	4	114	62.28	-1.40	0.47	0.917943
5545	dm3.chr3LHet	486,272 – 486,397	- - - - - - - -	7614	486,272 – 486,397	+	4	143	59.29	-1.73	0.39	0.943043
5545	dm3.chr3LHet	486,272 – 486,397	- - - - - - - -	7615	486,272 – 486,397	-	4	143	59.29	-1.57	0.37	0.856658
5546	dm3.chr3LHet	486,600 – 486,742	- - - - - - - -	7616	486,600 – 486,714	+	4	120	59.11	-2.24	0.23	0.762760
				7617	486,600 – 486,714	-	4	120	59.11	-2.12	0.30	0.923076
				7618	486,640 – 486,742	+	4	120	61.48	-1.72	0.36	0.804715
				7619	486,640 – 486,742	-	4	120	61.48	-2.09	0.29	0.766251
5547	dm3.chr3LHet	487,516 – 487,608	- - - - - - - -	7620	487,516 – 487,608	-	3	107	55.13	-3.32	0.47	0.999766
5548	dm3.chr3LHet	489,994 – 490,058	- - - - - - - -	7621	489,994 – 490,058	+	4	64	77.43	-1.71	0.62	0.690281
5549	dm3.chr3LHet	500,139 – 500,256	- - - - - - - -	7622	500,139 – 500,253	-	5	114	53.51	-1.87	0.23	0.836737
5549	dm3.chr3LHet	500,139 – 500,256	- - - - - - - -	7623	500,142 – 500,256	-	5	114	52.02	-1.34	0.24	0.500000
5550	dm3.chr3LHet	516,017 – 516,075	- - - - - - - -	7624	516,017 – 516,075	-	4	58	72.13	-1.96	0.43	0.660566
5551	dm3.chr3LHet	517,378 – 517,479	- - - - - - - -	7625	517,378 – 517,479	+	3	105	51.60	-2.03	0.31	0.905945
5551	dm3.chr3LHet	517,378 – 517,479	- - - - - - - -	7626	517,378 – 517,479	-	3	105	51.60	-3.08	0.26	0.991732
5552	dm3.chr3LHet	558,900 – 559,020	- - - - - - - -	7627	558,900 – 559,020	+	6	120	69.44	-2.03	0.42	0.939237
5553	dm3.chr3LHet	616,209 – 616,501	- - - - - - - -	7628	616,209 – 616,356	-	5	147	56.73	-1.92	0.25	0.858553
				7629	616,356 – 616,462	+	4	106	55.03	-1.42	0.36	0.900863
				7630	616,356 – 616,462	-	4	106	55.03	-2.14	0.55	0.999619
				7631	616,385 – 616,501	+	4	116	59.77	-1.25	0.38	0.680158
				7632	616,385 – 616,501	-	4	116	59.77	-1.66	0.58	0.996546
5554	dm3.chr3LHet	617,820 – 617,913	- - - - - - - -	7633	617,820 – 617,913	-	3	93	53.26	-1.92	0.39	0.958174
5555	dm3.chr3LHet	636,796 – 636,902	- - - - - - - -	7634	636,796 – 636,902	+	3	109	54.63	-1.15	0.40	0.560319
5556	dm3.chr3LHet	660,478 – 660,561	- - - - - - - -	7635	660,478 – 660,561	+	7	91	58.33	-0.34	0.46	0.585452
5556	dm3.chr3LHet	660,478 – 660,561	- - - - - - - -	7636	660,478 – 660,561	-	7	91	58.33	-0.73	0.48	0.908884
5557	dm3.chr3LHet	665,542 – 665,673	- - - - - - - -	7637	665,542 – 665,673	+	3	131	57.51	-1.67	0.34	0.614182
5557	dm3.chr3LHet	665,542 – 665,673	- - - - - - - -	7638	665,542 – 665,673	-	3	131	57.51	-1.64	0.34	0.585921
5558	dm3.chr3LHet	695,382 – 695,438	- - - - - - - -	7639	695,382 – 695,438	+	4	63	60.56	-1.76	0.50	0.984143
5559	dm3.chr3LHet	703,804 – 703,886	- - - - - - - -	7640	703,804 – 703,886	+	3	84	78.40	-2.17	0.75	0.948211
5560	dm3.chr3LHet	753,658 – 753,735	- - - intron="intron;ID=intron_FBgn0069977:2_FBgn0069977:1;Name=CG40467-in;Parent=FBtr0301118;parent_type=mRNA" - - - -	7641	753,658 – 753,735	-	4	77	61.47	-1.67	0.31	0.508089
5561	dm3.chr3LHet	757,667 – 757,721	- - - intron="intron;ID=intron_FBgn0069977:2_FBgn0069977:1;Name=CG40467-in;Parent=FBtr0301118;parent_type=mRNA" - - - -	7642	757,667 – 757,721	-	3	59	79.66	-2.53	0.60	0.892998
5562	dm3.chr3LHet	772,252 – 772,322	- - - intron="intron;ID=intron_FBgn0069977:2_FBgn0069977:1;Name=CG40467-in;Parent=FBtr0301118;parent_type=mRNA" - - - -	7643	772,252 – 772,322	+	3	74	63.13	-2.08	0.54	0.973819
5563	dm3.chr3LHet	837,521 – 837,640	- - - - - - - -	7644	837,521 – 837,640	+	4	120	62.23	-1.58	0.42	0.682464
5563	dm3.chr3LHet	837,521 – 837,640	- - - - - - - -	7645	837,521 – 837,640	-	4	120	62.23	-1.93	0.44	0.924779
5564	dm3.chr3LHet	860,770 – 860,833	- - - - - - - -	7646	860,770 – 860,833	-	3	63	54.59	-1.95	0.31	0.755235
5565	dm3.chr3LHet	887,985 – 888,037	- - - - - - - -	7647	887,985 – 888,037	+	3	65	51.10	-0.29	0.93	0.877511
5566	dm3.chr3LHet	917,652 – 917,744	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7648	917,652 – 917,744	+	3	99	57.93	-1.55	0.36	0.527014
5567	dm3.chr3LHet	948,353 – 948,417	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7649	948,353 – 948,417	-	4	64	64.88	-0.85	0.59	0.740443
5568	dm3.chr3LHet	969,035 – 969,162	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7650	969,035 – 969,162	-	5	128	77.86	-2.48	0.75	0.994137
5569	dm3.chr3LHet	975,215 – 975,318	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7651	975,215 – 975,318	-	5	103	80.20	-2.06	0.61	0.821284
5570	dm3.chr3LHet	1,002,196 – 1,002,351	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7652	1,002,196 – 1,002,351	+	4	164	70.81	-1.72	0.48	0.696152
5571	dm3.chr3LHet	1,024,777 – 1,024,860	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7653	1,024,777 – 1,024,860	+	4	89	57.83	-1.23	0.44	0.900334
5571	dm3.chr3LHet	1,024,777 – 1,024,860		7654	1,024,777 – 1,024,860	-	4	89	57.83	-0.96	0.41	0.618421
5572	dm3.chr3LHet	1,033,974 – 1,034,074	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7655	1,033,974 – 1,034,074	-	3	100	57.00	-1.13	0.47	0.753653
5573	dm3.chr3LHet	1,040,452 – 1,040,505	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7656	1,040,452 – 1,040,505	+	3	53	94.97	-1.53	0.88	0.508604
5573	dm3.chr3LHet	1,040,452 – 1,040,505		7657	1,040,452 – 1,040,505	-	3	53	94.97	-1.82	0.89	0.771490
5574	dm3.chr3LHet	1,040,986 – 1,041,049	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7658	1,040,986 – 1,041,049	-	6	63	79.05	-1.79	0.65	0.910425
5575	dm3.chr3LHet	1,041,184 – 1,041,291	- - - intron="intron;ID=intron_FBgn0085625:2_FBgn0085625:1;Name=CG41343-in;Parent=FBtr0301120;parent_type=mRNA" - - - -	7659	1,041,184 – 1,041,291	+	8	115	66.34	-1.47	0.44	0.954634
5576	dm3.chr3LHet	1,069,988 – 1,070,118	- - - - - - - -	7660	1,069,988 – 1,070,118	-	4	133	57.16	-2.10	0.20	0.534380
5577	dm3.chr3LHet	1,083,961 – 1,084,016	- - - - - - - -	7661	1,083,961 – 1,084,016	-	3	64	49.73	-1.55	0.32	0.648233
5578	dm3.chr3LHet	1,091,621 – 1,091,675	- - - - - - - -	7662	1,091,621 – 1,091,675	+	3	60	74.44	-1.82	0.97	0.986873
5579	dm3.chr3LHet	1,134,344 – 1,134,450	- - - - - - - -	7663	1,134,344 – 1,134,450	-	5	120	70.74	-1.38	0.46	0.528494
5580	dm3.chr3LHet	1,134,771 – 1,134,875	- - - - - - - -	7664	1,134,771 – 1,134,875	-	3	104	72.26	-1.41	0.69	0.762879
5581	dm3.chr3LHet	1,184,870 – 1,184,923	- - - intron="intron;ID=intron_FBgn0058178:2_FBgn0058178:1;Name=CG40178-in;Parent=FBtr0113817,FBtr0113818;parent_type=mRNA" - - - -	7665	1,184,870 – 1,184,923	+	7	56	67.64	-1.03	0.67	0.977891
5582	dm3.chr3LHet	1,260,492 – 1,260,738	- - - intron="intron;ID=intron_FBgn0058178:5_FBgn0058178:4;Name=CG40178-in;Parent=FBtr0113817,FBtr0113818;parent_type=mRNA" - - - -	7666	1,260,492 – 1,260,565	+	6	83	70.31	-1.63	0.42	0.638159
				7667	1,260,492 – 1,260,565	-	6	83	70.31	-1.70	0.44	0.777041
				7668	1,260,565 – 1,260,738	+	6	180	66.11	-1.88	0.33	0.827686
				7669	1,260,565 – 1,260,738	-	6	180	66.11	-1.77	0.33	0.757244
5583	dm3.chr3LHet	1,315,179 – 1,315,283	- - - intron="intron;ID=intron_FBgn0058178:6_FBgn0058178:5;Name=CG40178-in;Parent=FBtr0113817,FBtr0113818;parent_type=mRNA" - - - -	7670	1,315,179 – 1,315,283	+	3	105	84.05	-1.13	0.89	0.586034
5584	dm3.chr3LHet	1,343,313 – 1,343,421	- - - intron="intron;ID=intron_FBgn0058178:7_FBgn0058178:6;Name=CG40178-in;Parent=FBtr0113817,FBtr0113818;parent_type=mRNA" - - - -	7671	1,343,313 – 1,343,421	-	4	117	68.63	-1.57	0.46	0.627285
5585	dm3.chr3LHet	1,354,720 – 1,354,778	- - - intron="intron;ID=intron_FBgn0058178:10_FBgn0058178:9;Name=CG40178-in;Parent=FBtr0113817,FBtr0113818;parent_type=mRNA" - - - -	7672	1,354,720 – 1,354,778	-	4	58	76.44	-1.87	0.74	0.950394
5586	dm3.chr3LHet	1,398,299 – 1,398,391	- - - - - - - -	7673	1,398,299 – 1,398,391	-	4	94	74.29	-1.81	0.49	0.620658
5587	dm3.chr3LHet	1,427,020 – 1,427,070	- - - - - - - -	7674	1,427,020 – 1,427,070	+	3	59	50.91	-1.73	0.53	0.992260
5588	dm3.chr3LHet	1,522,255 – 1,522,349	- - - - - - - -	7675	1,522,255 – 1,522,349	+	5	111	69.47	-1.32	0.51	0.618628
5589	dm3.chr3LHet	1,529,835 – 1,529,894	- - - - - - - -	7676	1,529,835 – 1,529,894	+	4	59	77.68	-1.94	0.72	0.938232
5589	dm3.chr3LHet	1,529,835 – 1,529,894	- - - - - - - -	7677	1,529,835 – 1,529,894	-	4	59	77.68	-1.85	0.62	0.766807
5590	dm3.chr3LHet	1,556,428 – 1,556,512	- - - - - - - -	7678	1,556,428 – 1,556,512	+	3	85	67.20	-1.92	0.49	0.781178
5590	dm3.chr3LHet	1,556,428 – 1,556,512	- - - - - - - -	7679	1,556,428 – 1,556,512	-	3	85	67.20	-1.61	0.58	0.813574
5591	dm3.chr3LHet	1,639,806 – 1,639,914	- - - - - - - -	7680	1,639,806 – 1,639,914	+	4	118	64.11	-1.30	0.43	0.661540
5592	dm3.chr3LHet	1,651,739 – 1,651,845	- - - intron="intron;ID=intron_FBgn0085599:2_FBgn0085599:1;Name=CG41284-in;Parent=FBtr0301798;parent_type=mRNA" - - - -	7681	1,651,739 – 1,651,845	-	3	106	54.72	-0.95	0.43	0.536102
5593	dm3.chr3LHet	1,653,551 – 1,653,610	- - - - - - - -	7682	1,653,551 – 1,653,610	-	3	59	89.83	-2.57	0.95	0.991946
5594	dm3.chr3LHet	1,654,358 – 1,654,444	- - - - - - - -	7683	1,654,358 – 1,654,444	+	3	102	69.31	-1.16	0.70	0.633289
5594	dm3.chr3LHet	1,654,358 – 1,654,444	- - - - - - - -	7684	1,654,358 – 1,654,444	-	3	102	69.31	-2.22	0.65	0.976393
5595	dm3.chr3LHet	1,750,961 – 1,751,069	- - - - - - - -	7685	1,750,961 – 1,751,069	+	3	118	53.20	-1.94	0.41	0.974237
5596	dm3.chr3LHet	1,757,608 – 1,757,673	- - - - - - - -	7686	1,757,608 – 1,757,673	+	5	72	53.38	-0.38	0.52	0.896424
5597	dm3.chr3LHet	1,781,403 – 1,781,459	- - - - - - - -	7687	1,781,403 – 1,781,459	-	7	65	61.42	-0.60	0.56	0.880698
5598	dm3.chr3LHet	1,790,016 – 1,790,072	- - - - - - - -	7688	1,790,016 – 1,790,072	-	7	58	65.91	-1.57	0.51	0.989820
5599	dm3.chr3LHet	1,791,651 – 1,791,724	- - - - - - - -	7689	1,791,651 – 1,791,724	+	4	74	51.63	-1.77	0.42	0.992568
5600	dm3.chr3LHet	1,805,291 – 1,805,388	- - - - - - - -	7690	1,805,291 – 1,805,388	+	5	100	76.02	-1.83	0.76	0.978230
5600	dm3.chr3LHet	1,805,291 – 1,805,388	- - - - - - - -	7691	1,805,291 – 1,805,388	-	5	100	76.02	-1.52	0.62	0.801389
5601	dm3.chr3LHet	1,812,312 – 1,812,363	- - - - - - - -	7692	1,812,312 – 1,812,363	+	6	58	67.04	-0.79	0.59	0.741795
5602	dm3.chr3LHet	1,825,279 – 1,825,431	- - - - - - - -	7693	1,825,279 – 1,825,379	-	4	116	66.81	-1.11	0.50	0.572463
5602	dm3.chr3LHet	1,825,279 – 1,825,431	- - - - - - - -	7694	1,825,339 – 1,825,431	-	4	92	57.71	-2.27	0.20	0.500000
5603	dm3.chr3LHet	1,848,457 – 1,848,536	- - - - - - - -	7695	1,848,457 – 1,848,536	+	3	91	52.11	-2.87	0.17	0.752187
5603	dm3.chr3LHet	1,848,457 – 1,848,536	- - - - - - - -	7696	1,848,457 – 1,848,536	-	3	91	52.11	-3.76	0.12	0.945505
5604	dm3.chr3LHet	1,848,829 – 1,848,927	- - - - - - - -	7697	1,848,829 – 1,848,924	+	5	120	73.33	-2.53	0.68	0.994487
5604	dm3.chr3LHet	1,848,829 – 1,848,927	- - - - - - - -	7698	1,848,829 – 1,848,927	+	5	120	73.82	-2.23	0.67	0.985472
5605	dm3.chr3LHet	1,942,430 – 1,942,512	- - - - - - - -	7699	1,942,430 – 1,942,512	+	3	84	60.24	-1.76	0.38	0.677304
5606	dm3.chr3LHet	1,985,254 – 1,985,312	- - - - - - - -	7700	1,985,254 – 1,985,312	-	4	59	58.09	-1.04	0.55	0.952153
5607	dm3.chr3LHet	1,996,805 – 1,996,901	- - - - - - - -	7701	1,996,805 – 1,996,901	+	3	96	57.29	-1.36	0.55	0.964546
5607	dm3.chr3LHet	1,996,805 – 1,996,901	- - - - - - - -	7702	1,996,805 – 1,996,901	-	3	96	57.29	-1.68	0.44	0.936470
5608	dm3.chr3LHet	1,999,568 – 1,999,618	- - - - - - - -	7703	1,999,568 – 1,999,618	+	4	53	78.96	-1.39	0.74	0.642828
5609	dm3.chr3LHet	2,021,542 – 2,021,638	- - - - - - - -	7704	2,021,542 – 2,021,638	+	5	121	64.53	-1.28	0.52	0.872183
5610	dm3.chr3LHet	2,024,167 – 2,024,262	- - - - - - - -	7705	2,024,167 – 2,024,262	+	4	105	67.43	-1.65	0.61	0.960014
5611	dm3.chr3LHet	2,047,049 – 2,047,113	- - - - - - - -	7706	2,047,049 – 2,047,113	+	5	65	66.92	-0.97	0.52	0.764200
5611	dm3.chr3LHet	2,047,049 – 2,047,113	- - - - - - - -	7707	2,047,049 – 2,047,113	-	5	65	66.92	-0.87	0.48	0.515250
5612	dm3.chr3LHet	2,067,198 – 2,067,316	- - - - - - - -	7708	2,067,198 – 2,067,316	-	3	120	78.49	-1.59	0.74	0.711195
5613	dm3.chr3LHet	2,077,501 – 2,077,557	- - - - - - - -	7709	2,077,501 – 2,077,557	+	3	57	69.51	-2.27	0.57	0.950578
5613	dm3.chr3LHet	2,077,501 – 2,077,557	- - - - - - - -	7710	2,077,501 – 2,077,557	-	3	57	69.51	-2.70	0.55	0.984906
5614	dm3.chr3LHet	2,092,578 – 2,092,701	- - - - - - - -	7711	2,092,578 – 2,092,701	-	4	123	50.22	-1.86	0.42	0.993999
5615	dm3.chr3LHet	2,147,042 – 2,147,147	- - - - - - - -	7712	2,147,042 – 2,147,147	+	4	118	73.39	-1.47	0.62	0.778306
5616	dm3.chr3LHet	2,208,936 – 2,209,017	- - - - - - - -	7713	2,208,936 – 2,209,017	-	5	88	50.30	-0.64	0.46	0.905663
5617	dm3.chr3LHet	2,243,175 – 2,243,226	- - - - - - - -	7714	2,243,175 – 2,243,226	-	4	65	56.90	-0.39	0.74	0.866098
5618	dm3.chr3LHet	2,255,130 – 2,255,225	- - - intron="intron;ID=intron_CG17436:2254309-2255059_CG17436:2263374-2263535;Name=vtd-in;Parent=FBtr0113746;parent_type=mRNA" - - - -	7715	2,255,130 – 2,255,225	-	4	96	82.64	-1.53	0.73	0.562242
5619	dm3.chr3LHet	2,311,446 – 2,311,543	- - - - - - - -	7716	2,311,446 – 2,311,543	-	4	119	63.09	-1.91	0.44	0.944785
5620	dm3.chr3LHet	2,321,467 – 2,321,544	- - - - - - - -	7717	2,321,467 – 2,321,544	+	3	78	67.38	-3.40	0.54	0.999005
5621	dm3.chr3LHet	2,378,635 – 2,378,745	- - - - - - - -	7718	2,378,635 – 2,378,745	-	3	117	74.00	-2.32	0.61	0.959458
5622	dm3.chr3LHet	2,383,764 – 2,383,819	- - - - - - - -	7719	2,383,764 – 2,383,819	-	3	55	93.94	-1.38	1.01	0.924811
5623	dm3.chr3LHet	2,421,944 – 2,421,999	- - - intron="intron;ID=intron_CG17023:2410017-2410075_CG17023:2423418-2423549;Name=Dbp80-in;Parent=FBtr0113714,FBtr0113715,FBtr0113716;parent_type=mRNA" - - - -	7720	2,421,944 – 2,421,999	-	3	56	48.80	-0.54	0.58	0.903696
5624	dm3.chr3LHet	2,445,663 – 2,445,739	- - - intron="intron;ID=intron_CG17023:2423612-2423807_CG17023:2454979-2455093;Name=Dbp80-in;Parent=FBtr0113714,FBtr0113715;parent_type=mRNA" - - - -	7721	2,445,663 – 2,445,739	+	8	77	63.25	-1.79	0.58	0.999119
5624	dm3.chr3LHet	2,445,663 – 2,445,739		7722	2,445,663 – 2,445,739	-	8	77	63.25	-1.40	0.46	0.983731
5625	dm3.chr3LHet	2,462,091 – 2,462,181	- - - intron="intron;ID=intron_CG17023:2455154-2455331_CG17023:2473205-2473306;Name=Dbp80-in;Parent=FBtr0113714,FBtr0113715;parent_type=mRNA" - - - -	7723	2,462,091 – 2,462,181	-	5	91	46.84	-0.83	0.34	0.619404
5626	dm3.chr3LHet	2,488,992 – 2,489,106	- - - intron="intron;ID=intron_CG17023:2473205-2473306_CG17023:2503938-2504073;Name=Dbp80-in;Parent=FBtr0113715;parent_type=mRNA" - - - -	7724	2,488,992 – 2,489,106	+	4	120	71.14	-1.45	0.51	0.500000
5627	dm3.chr3LHet	2,491,205 – 2,491,270	- - - intron="intron;ID=intron_CG17023:2473205-2473306_CG17023:2503938-2504073;Name=Dbp80-in;Parent=FBtr0113715;parent_type=mRNA" - - - -	7725	2,491,205 – 2,491,270	-	5	68	70.96	-1.22	0.72	0.938275
5628	dm3.chr3LHet	2,505,513 – 2,505,564	- - - intron="intron;ID=intron_CG17023:2503938-2504073_CG17023:2543666-2543828;Name=Dbp80-in;Parent=FBtr0113715;parent_type=mRNA" - - - -	7726	2,505,513 – 2,505,564	-	5	60	64.56	-1.96	0.35	0.807485
5629	dm3.chr3LHet	2,536,384 – 2,536,611	- - - intron="intron;ID=intron_CG17023:2503938-2504073_CG17023:2543666-2543828;Name=Dbp80-in;Parent=FBtr0113715;parent_type=mRNA" - - - -	7727	2,536,384 – 2,536,498	+	5	117	68.47	-0.83	0.54	0.522259
5629	dm3.chr3LHet	2,536,384 – 2,536,611		7728	2,536,498 – 2,536,611	-	4	113	66.22	-1.20	0.67	0.950889
5630	dm3.chr3LHet	2,536,892 – 2,536,986	- - - intron="intron;ID=intron_CG17023:2503938-2504073_CG17023:2543666-2543828;Name=Dbp80-in;Parent=FBtr0113715;parent_type=mRNA" - - - -	7729	2,536,892 – 2,536,986	+	5	120	67.40	-2.37	0.87	0.998152
5630	dm3.chr3LHet	2,536,892 – 2,536,986		7730	2,536,892 – 2,536,986	-	5	120	67.40	-4.05	0.92	0.999090
5631	dm3.chr3L	108,666 – 108,761	- - - - - - - -	7731	108,666 – 108,761	+	4	98	54.77	-1.93	0.22	0.551964
5632	dm3.chr3L	117,346 – 117,404	- - - - - - - -	7732	117,346 – 117,404	+	4	58	62.64	-0.59	0.57	0.706354
5633	dm3.chr3L	118,882 – 118,947	- - - - - - - -	7733	118,882 – 118,947	+	3	65	56.92	-1.03	0.71	0.976912
5633	dm3.chr3L	118,882 – 118,947	- - - - - - - -	7734	118,882 – 118,947	-	3	65	56.92	-1.28	0.43	0.727806
5634	dm3.chr3L	123,448 – 123,549	- - - - - - - -	7735	123,448 – 123,549	-	4	120	67.03	-1.13	0.63	0.783091
5635	dm3.chr3L	137,581 – 137,660	- - - intron="intron;ID=intron_FBgn0020386:8_FBgn0020386:14;Name=Pk61C-in;Parent=FBtr0072468,FBtr0072464,FBtr0072465,FBtr0072466,FBtr0072467;parent_type=mRNA" - - - -	7736	137,581 – 137,660	+	4	89	83.58	-1.85	0.69	0.652680
5636	dm3.chr3L	152,699 – 152,752	- - - - - - - -	7737	152,699 – 152,752	-	3	53	96.23	-1.45	0.99	0.887997
5637	dm3.chr3L	156,540 – 156,640	- - - intron="intron;ID=intron_FBgn0035101:1_FBgn0035101:3;Name=p130CAS-in;Parent=FBtr0299864;parent_type=mRNA" - - - -	7738	156,540 – 156,640	+	5	108	73.68	-3.00	0.60	0.997475
5637	dm3.chr3L	156,540 – 156,640		7739	156,540 – 156,640	-	5	108	73.68	-2.43	0.63	0.990139
5638	dm3.chr3L	168,001 – 168,091	- - - intron="intron;ID=intron_FBgn0035101:3_FBgn0035101:4;Name=p130CAS-in;Parent=FBtr0301889,FBtr0299864;parent_type=mRNA" - - - -	7740	168,001 – 168,091	-	10	115	76.47	-2.91	0.52	0.994338
5639	dm3.chr3L	169,395 – 169,487	- - - intron="intron;ID=intron_FBgn0035101:4_FBgn0035101:8;Name=p130CAS-in;Parent=FBtr0301889,FBtr0299864;parent_type=mRNA" - - - -	7741	169,395 – 169,487	-	5	96	84.28	-1.12	0.86	0.625735
5640	dm3.chr3L	193,460 – 193,602	- - CDS="CDS;ID=CDS_FBgn0035106:2_476;Name=rno-cds;Parent=FBtr0305548;parent_type=mRNA" - - - - -	7742	193,460 – 193,571	-	7	119	71.09	-1.56	0.54	0.953618
5640	dm3.chr3L	193,460 – 193,602		7743	193,504 – 193,602	-	7	119	72.45	-1.38	0.48	0.500000
5641	dm3.chr3L	198,435 – 198,528	- - CDS="CDS;ID=CDS_FBgn0035106:7_476;Name=rno-cds;Parent=FBtr0305548;parent_type=mRNA" - - - - -	7744	198,435 – 198,528	+	4	93	98.39	-1.49	0.95	0.743071
5641	dm3.chr3L	198,435 – 198,528		7745	198,435 – 198,528	-	4	93	98.39	-1.81	0.97	0.921403
5642	dm3.chr3L	199,235 – 199,335	- - - intron="intron;ID=intron_FBgn0035106:9_FBgn0035106:8;Name=rno-in;Parent=FBtr0072532;parent_type=mRNA" - - - -	7746	199,235 – 199,335	-	12	118	67.81	-1.45	0.38	0.710510
5643	dm3.chr3L	205,511 – 205,593	- - - intron="intron;ID=intron_FBgn0025592:6_FBgn0025592:4;Name=Gyk-in;Parent=FBtr0072530;parent_type=mRNA" - - - -	7747	205,511 – 205,593	-	14	82	74.29	-1.47	0.49	0.918022
5644	dm3.chr3L	228,492 – 228,604	FBnoncoding="ncRNA;ID=FBtr0304059;Name=CR42862-RA;Parent=FBgn0262109;Dbxref=FlyBase_Annotation_IDs:CR42862-RA;score_text=Strongly" - - - - - - -	7748	228,492 – 228,604	+	12	118	86.58	-3.12	0.74	0.995487
5645	dm3.chr3L	251,981 – 252,072	- - CDS="CDS;ID=CDS_FBgn0024806:4_470;Name=DIP2-cds;Parent=FBtr0072520,FBtr0305325;parent_type=mRNA" - - - - -	7749	251,981 – 252,072	-	13	99	70.82	-0.96	0.54	0.904572
5646	dm3.chr3L	260,191 – 260,298	- - - intron="intron;ID=intron_CG7008:3_CG7008:4;Name=Tudor-SN-in;Parent=FBtr0072519;parent_type=mRNA" - - - -	7750	260,191 – 260,291	-	13	118	71.87	-0.12	0.70	0.525776
5646	dm3.chr3L	260,191 – 260,298		7751	260,206 – 260,298	-	13	120	71.13	-0.29	0.78	0.687862
5647	dm3.chr3L	261,854 – 261,959	FBnoncoding="snoRNA;ID=FBtr0113599;Name=snoRNA:Psi18S-996-RA;Parent=FBgn0083014;Dbxref=FlyBase_Annotation_IDs:CR34630-RA,REFSEQ:NR_003839;score_text=Weakly" - - intron="intron;ID=intron_CG7008:2_CG7008:3;Name=Tudor-SN-in;Parent=FBtr0072519;parent_type=mRNA" - - - -	7752	261,854 – 261,959	+	12	120	65.02	-2.31	0.38	0.995735
5647	dm3.chr3L	261,854 – 261,959		7753	261,854 – 261,959	-	12	120	65.02	-2.47	0.48	0.999508
5648	dm3.chr3L	263,330 – 263,500	- - - intron="intron;ID=intron_CG7008:1_CG7008:2;Name=Tudor-SN-in;Parent=FBtr0072519;parent_type=mRNA" - - - -	7754	263,330 – 263,421	-	5	96	78.99	-2.40	0.70	0.988058
5648	dm3.chr3L	263,330 – 263,500		7755	263,396 – 263,500	+	5	105	83.51	-1.07	0.82	0.538264
5649	dm3.chr3L	266,463 – 266,573	- - - - - - - -	7756	266,463 – 266,573	+	5	112	69.72	-1.02	0.56	0.523074
5650	dm3.chr3L	271,827 – 271,962	- - - intron="intron;ID=intron_CG18321:1_CG18321:2;Name=miple2-in;Parent=FBtr0072506;parent_type=mRNA" - - - -	7757	271,827 – 271,935	+	5	113	90.37	-3.01	0.85	0.992238
				7758	271,827 – 271,935	-	5	113	90.37	-1.86	0.80	0.699022
				7759	271,856 – 271,962	+	3	106	96.20	-1.31	0.95	0.668938
5651	dm3.chr3L	279,338 – 279,428	- - CDS="CDS;ID=CDS_FBgn0259723:3_375;Name=CG42377-cds;Parent=FBtr0299980;parent_type=mRNA" - - - - -	7760	279,338 – 279,428	+	6	90	73.78	-1.31	0.56	0.788751
5651	dm3.chr3L	279,338 – 279,428		7761	279,338 – 279,428	-	6	90	73.78	-1.24	0.54	0.676437
5652	dm3.chr3L	293,118 – 293,226	- - - intron="intron;ID=intron_FBgn0259743:2_FBgn0259743:6;Name=RhoGEF3-in;Parent=FBtr0299988;parent_type=mRNA" - - - -	7762	293,118 – 293,226	+	6	123	71.45	-1.29	0.54	0.753925
5652	dm3.chr3L	293,118 – 293,226		7763	293,118 – 293,226	-	6	123	71.45	-1.69	0.56	0.946568
5653	dm3.chr3L	293,367 – 293,498	- - - intron="intron;ID=intron_FBgn0259743:3_FBgn0259743:6;Name=RhoGEF3-in;Parent=FBtr0299987;parent_type=mRNA" - - - -	7764	293,367 – 293,498	-	4	139	63.25	-1.58	0.50	0.897951
5654	dm3.chr3L	294,073 – 294,214	- - - intron="intron;ID=intron_FBgn0259743:3_FBgn0259743:6;Name=RhoGEF3-in;Parent=FBtr0299987;parent_type=mRNA" - - - -	7765	294,073 – 294,214	+	3	141	92.42	-2.09	0.86	0.867674
5654	dm3.chr3L	294,073 – 294,214		7766	294,073 – 294,214	-	3	141	92.42	-2.15	0.84	0.847942
5655	dm3.chr3L	295,757 – 295,884	- - - intron="intron;ID=intron_FBgn0259743:3_FBgn0259743:6;Name=RhoGEF3-in;Parent=FBtr0299987;parent_type=mRNA" - - - -	7767	295,757 – 295,854	+	6	118	76.03	-2.91	0.35	0.873045
5655	dm3.chr3L	295,757 – 295,884		7768	295,778 – 295,884	+	6	114	75.89	-2.74	0.45	0.973323
5656	dm3.chr3L	312,086 – 312,221	- - - - - - - -	7769	312,086 – 312,189	+	4	120	83.59	-2.08	0.71	0.848597
				7770	312,086 – 312,189	-	4	120	83.59	-1.26	0.84	0.650454
				7771	312,112 – 312,221	-	5	120	83.33	-1.70	0.67	0.516503
5657	dm3.chr3L	314,198 – 314,281	- - - - - - - -	7772	314,198 – 314,281	-	6	83	80.08	-2.55	0.58	0.976885
5658	dm3.chr3L	314,465 – 314,589	- - - intron="intron;ID=intron_CG7004:13_CG7004:2;Name=fwd-in;Parent=FBtr0072516;parent_type=mRNA" - - - -	7773	314,465 – 314,589	+	3	133	64.91	-1.63	0.53	0.832356
5658	dm3.chr3L	314,465 – 314,589		7774	314,465 – 314,589	-	3	133	64.91	-1.62	0.58	0.907940
5659	dm3.chr3L	315,212 – 315,439	- - - intron="intron;ID=intron_CG7004:13_CG7004:2;Name=fwd-in;Parent=FBtr0072516;parent_type=mRNA" - - - -	7775	315,212 – 315,331	+	3	119	96.64	-1.44	0.92	0.596029
				7776	315,291 – 315,403	+	4	112	77.38	-2.16	0.64	0.941170
				7777	315,331 – 315,439	+	4	108	80.09	-2.40	0.60	0.919185
				7778	315,331 – 315,439	-	4	108	80.09	-1.82	0.71	0.851129
5660	dm3.chr3L	315,671 – 315,791	- - - intron="intron;ID=intron_CG7004:13_CG7004:2;Name=fwd-in;Parent=FBtr0072516;parent_type=mRNA" - - - -	7779	315,671 – 315,791	+	3	120	90.00	-2.57	0.71	0.814651
5661	dm3.chr3L	317,229 – 317,345	- - CDS="CDS;ID=CDS_FBgn0085293:2_344;Name=CG34264-cds;Parent=FBtr0299835;parent_type=mRNA" intron="intron;ID=intron_CG7004:13_CG7004:2;Name=fwd-in;Parent=FBtr0072516;parent_type=mRNA" - - - -	7780	317,229 – 317,345	+	10	116	65.48	-1.93	0.29	0.874201
5662	dm3.chr3L	321,026 – 321,120	- - - - - - - -	7781	321,026 – 321,120	-	5	103	87.34	-0.82	0.93	0.500000
5663	dm3.chr3L	331,902 – 331,978	- - - - - - - -	7782	331,902 – 331,978	+	7	84	63.56	-1.02	0.39	0.523090
5664	dm3.chr3L	333,571 – 333,669	- - CDS="CDS;ID=CDS_FBgn0035132:1_368;Name=mthl10-cds;Parent=FBtr0072573;parent_type=mRNA" - - - - -	7783	333,571 – 333,669	+	9	115	71.48	-0.84	0.56	0.542938
5665	dm3.chr3L	356,318 – 356,380	- - - - - - - -	7784	356,318 – 356,380	-	6	69	62.81	-0.87	0.44	0.690271
5666	dm3.chr3L	389,612 – 389,709	- - - intron="intron;ID=intron_FBgn0262139:13_FBgn0262139:12;Name=trh-in;Parent=FBtr0304122;parent_type=mRNA" - - - -	7785	389,612 – 389,709	-	4	103	81.90	-1.68	0.76	0.783949
5667	dm3.chr3L	412,712 – 412,793	- - - - - - - -	7786	412,712 – 412,793	+	5	84	91.00	-2.81	0.80	0.974914
5667	dm3.chr3L	412,712 – 412,793	- - - - - - - -	7787	412,712 – 412,793	-	5	84	91.00	-2.27	0.75	0.785424
5668	dm3.chr3L	433,625 – 433,731	- - CDS="CDS;ID=CDS_FBgn0035139:1_438;Name=CG13891-cds;Parent=FBtr0072566;parent_type=mRNA" - - - - -	7788	433,625 – 433,731	-	6	120	75.63	-1.35	0.56	0.575250
5669	dm3.chr3L	437,806 – 437,898	- - - intron="intron;ID=intron_FBgn0001316:5_FBgn0001316:4;Name=klar-in;Parent=FBtr0112807;parent_type=mRNA" - - - -	7789	437,806 – 437,898	+	7	98	75.36	-2.86	0.43	0.975666
5669	dm3.chr3L	437,806 – 437,898		7790	437,806 – 437,898	-	7	98	75.36	-1.70	0.49	0.605366
5670	dm3.chr3L	438,043 – 438,100	- - - intron="intron;ID=intron_FBgn0001316:5_FBgn0001316:4;Name=klar-in;Parent=FBtr0112807;parent_type=mRNA" - - - -	7791	438,043 – 438,100	-	3	57	92.86	-1.57	0.89	0.661120
5671	dm3.chr3L	439,377 – 439,468	- - - intron="intron;ID=intron_FBgn0001316:5_FBgn0001316:4;Name=klar-in;Parent=FBtr0112807;parent_type=mRNA" - - - -	7792	439,377 – 439,468	-	7	92	73.29	-1.75	0.41	0.500000
5672	dm3.chr3L	442,902 – 443,017	- - CDS="CDS;ID=CDS_FBgn0001316:6_370;Name=klar-cds;Parent=FBtr0112808;parent_type=mRNA" - - - - -	7793	442,902 – 443,017	-	13	120	75.66	-2.09	0.38	0.795644
5673	dm3.chr3L	444,783 – 444,902	- - CDS="CDS;ID=CDS_FBgn0001316:11_370;Name=klar-cds;Parent=FBtr0112808;parent_type=mRNA" - - - - -	7794	444,783 – 444,902	+	12	120	77.07	-1.75	0.58	0.956425
5674	dm3.chr3L	449,550 – 449,641	- - - intron="intron;ID=intron_FBgn0001316:13_FBgn0001316:12;Name=klar-in;Parent=FBtr0072565,FBtr0110818,FBtr0112808;parent_type=mRNA" - - - -	7795	449,550 – 449,641	-	5	95	72.22	-1.43	0.55	0.778808
5675	dm3.chr3L	449,816 – 449,948	- - - intron="intron;ID=intron_FBgn0001316:13_FBgn0001316:12;Name=klar-in;Parent=FBtr0072565,FBtr0110818,FBtr0112808;parent_type=mRNA" - - - -	7796	449,816 – 449,948	-	6	141	66.35	-2.19	0.30	0.859114
5676	dm3.chr3L	455,403 – 455,587	- - - intron="intron;ID=intron_FBgn0001316:17_FBgn0001316:16;Name=klar-in;Parent=FBtr0072565,FBtr0110818,FBtr0112808;parent_type=mRNA" - - - -	7797	455,403 – 455,495	+	7	107	74.73	-1.40	0.63	0.814422
5676	dm3.chr3L	455,403 – 455,587		7798	455,495 – 455,587	-	6	92	75.22	-0.99	0.66	0.734670
5677	dm3.chr3L	467,684 – 467,779	- - - intron="intron;ID=intron_FBgn0001316:18_FBgn0001316:17;Name=klar-in;Parent=FBtr0072565,FBtr0110818,FBtr0112808;parent_type=mRNA" - - - -	7799	467,684 – 467,779	+	5	96	88.16	-1.71	0.82	0.767990
5677	dm3.chr3L	467,684 – 467,779		7800	467,684 – 467,779	-	5	96	88.16	-1.17	0.87	0.534334
5678	dm3.chr3L	477,016 – 477,111	- - - intron="intron;ID=intron_FBgn0001316:18_FBgn0001316:17;Name=klar-in;Parent=FBtr0072565,FBtr0110818,FBtr0112808;parent_type=mRNA" - - - -	7801	477,016 – 477,111	-	3	109	76.36	-1.27	0.76	0.545034
5679	dm3.chr3L	477,288 – 477,390	- - - intron="intron;ID=intron_FBgn0001316:18_FBgn0001316:17;Name=klar-in;Parent=FBtr0072565,FBtr0110818,FBtr0112808;parent_type=mRNA" - - - -	7802	477,288 – 477,390	+	6	114	70.50	-1.50	0.48	0.698397
5680	dm3.chr3L	487,220 – 487,327	- - - intron="intron;ID=intron_FBgn0001316:18_FBgn0001316:17;Name=klar-in;Parent=FBtr0072565,FBtr0110818,FBtr0112808;parent_type=mRNA" - - - -	7803	487,220 – 487,327	-	5	111	90.32	-2.23	0.69	0.598896
5681	dm3.chr3L	490,863 – 490,923	- - - intron="intron;ID=intron_FBgn0001316:18_FBgn0001316:17;Name=klar-in;Parent=FBtr0072565,FBtr0110818,FBtr0112808;parent_type=mRNA" - - - -	7804	490,863 – 490,923	+	6	76	72.87	-1.67	0.60	0.897423
5682	dm3.chr3L	491,864 – 491,959	- - - intron="intron;ID=intron_FBgn0001316:18_FBgn0001316:17;Name=klar-in;Parent=FBtr0072565,FBtr0110818,FBtr0112808;parent_type=mRNA" - - - -	7805	491,864 – 491,959	+	7	100	69.01	-0.86	0.50	0.696433
5683	dm3.chr3L	493,666 – 493,744	- - - intron="intron;ID=intron_FBgn0001316:18_FBgn0001316:17;Name=klar-in;Parent=FBtr0072565,FBtr0110818,FBtr0112808;parent_type=mRNA" - - - -	7806	493,666 – 493,744	+	10	82	72.55	-2.15	0.33	0.860568
5684	dm3.chr3L	496,969 – 497,130	- - - intron="intron;ID=intron_FBgn0001316:18_FBgn0001316:17;Name=klar-in;Parent=FBtr0072565,FBtr0110818,FBtr0112808;parent_type=mRNA" - - - -	7807	496,969 – 497,063	+	6	106	81.84	-1.85	0.61	0.636250
				7808	496,969 – 497,063	-	6	106	81.84	-2.01	0.58	0.679008
				7809	497,034 – 497,130	+	6	99	78.14	-2.21	0.50	0.885751
5685	dm3.chr3L	501,801 – 501,899	- - - - - - - -	7810	501,801 – 501,899	+	7	109	57.61	-1.31	0.32	0.737351
5686	dm3.chr3L	504,201 – 504,291	- - - - - - - -	7811	504,201 – 504,291	+	4	120	78.59	-1.98	0.74	0.912431
5686	dm3.chr3L	504,201 – 504,291	- - - - - - - -	7812	504,201 – 504,291	-	4	120	78.59	-2.31	0.78	0.977579
5687	dm3.chr3L	515,588 – 515,688	- - - intron="intron;ID=intron_FBgn0001316:23_FBgn0001316:21;Name=klar-in;Parent=FBtr0072565,FBtr0112808;parent_type=mRNA" - - - -	7813	515,588 – 515,688	+	9	119	72.61	-1.55	0.45	0.576408
5688	dm3.chr3L	516,178 – 516,271	- - - intron="intron;ID=intron_FBgn0001316:23_FBgn0001316:21;Name=klar-in;Parent=FBtr0072565,FBtr0112808;parent_type=mRNA" - - - -	7814	516,178 – 516,271	-	4	107	76.10	-1.26	0.69	0.678093
5689	dm3.chr3L	517,238 – 517,334	- - - intron="intron;ID=intron_FBgn0001316:23_FBgn0001316:21;Name=klar-in;Parent=FBtr0072565,FBtr0112808;parent_type=mRNA" - - - -	7815	517,238 – 517,334	+	6	107	59.68	-0.79	0.40	0.507444
5690	dm3.chr3L	521,943 – 522,032	- - - intron="intron;ID=intron_FBgn0001316:23_FBgn0001316:21;Name=klar-in;Parent=FBtr0072565,FBtr0112808;parent_type=mRNA" - - - -	7816	521,943 – 522,032	-	5	96	61.66	-2.58	0.25	0.941815
5691	dm3.chr3L	523,637 – 523,738	- - - intron="intron;ID=intron_FBgn0001316:23_FBgn0001316:21;Name=klar-in;Parent=FBtr0072565,FBtr0112808;parent_type=mRNA" - - - -	7817	523,637 – 523,738	-	5	106	78.81	-2.20	0.65	0.960149
5692	dm3.chr3L	525,501 – 525,594	- - - intron="intron;ID=intron_FBgn0001316:23_FBgn0001316:21;Name=klar-in;Parent=FBtr0072565,FBtr0112808;parent_type=mRNA" - - - -	7818	525,501 – 525,594	-	7	93	66.25	-1.00	0.50	0.886312
5693	dm3.chr3L	530,496 – 530,604	- - - intron="intron;ID=intron_FBgn0001316:23_FBgn0001316:21;Name=klar-in;Parent=FBtr0072565,FBtr0112808;parent_type=mRNA" - - - -	7819	530,496 – 530,604	+	5	120	76.97	-1.67	0.68	0.896353
5693	dm3.chr3L	530,496 – 530,604		7820	530,496 – 530,604	-	5	120	76.97	-2.27	0.60	0.964530
5694	dm3.chr3L	538,784 – 538,896	- - - intron="intron;ID=intron_FBgn0001316:23_FBgn0001316:21;Name=klar-in;Parent=FBtr0072565,FBtr0112808;parent_type=mRNA" - - - -	7821	538,784 – 538,896	+	5	116	88.33	-1.71	0.78	0.575426
5694	dm3.chr3L	538,784 – 538,896		7822	538,784 – 538,896	-	5	116	88.33	-1.92	0.79	0.771696
5695	dm3.chr3L	548,553 – 548,651	- - - intron="intron;ID=intron_FBgn0035142:3_FBgn0035142:4;Name=hipk-in;Parent=FBtr0072551,FBtr0072552;parent_type=mRNA" - - - -	7823	548,553 – 548,651	+	7	112	64.48	-0.98	0.47	0.779400
5696	dm3.chr3L	551,580 – 551,694	- - - intron="intron;ID=intron_FBgn0035142:3_FBgn0035142:4;Name=hipk-in;Parent=FBtr0072551,FBtr0072552;parent_type=mRNA" - - - -	7824	551,580 – 551,694	+	6	120	75.07	-1.70	0.47	0.634762
5697	dm3.chr3L	558,879 – 558,988	- - - intron="intron;ID=intron_FBgn0035142:3_FBgn0035142:4;Name=hipk-in;Parent=FBtr0072551,FBtr0072552;parent_type=mRNA" - - - -	7825	558,879 – 558,974	+	7	112	83.35	-2.08	0.69	0.891022
5697	dm3.chr3L	558,879 – 558,988		7826	558,886 – 558,988	+	7	110	81.96	-2.17	0.67	0.940667
5698	dm3.chr3L	559,048 – 559,143	- - - intron="intron;ID=intron_FBgn0035142:3_FBgn0035142:4;Name=hipk-in;Parent=FBtr0072551,FBtr0072552;parent_type=mRNA" - - - -	7827	559,048 – 559,143	-	4	96	72.94	-1.86	0.47	0.535041
5699	dm3.chr3L	559,419 – 559,533	- - - intron="intron;ID=intron_FBgn0035142:3_FBgn0035142:4;Name=hipk-in;Parent=FBtr0072551,FBtr0072552;parent_type=mRNA" - - - -	7828	559,419 – 559,533	+	5	114	99.65	-0.84	1.00	0.521680
5699	dm3.chr3L	559,419 – 559,533		7829	559,419 – 559,533	-	5	114	99.65	-1.02	1.00	0.656892
5700	dm3.chr3L	562,931 – 563,034	- - - intron="intron;ID=intron_FBgn0035142:3_FBgn0035142:4;Name=hipk-in;Parent=FBtr0072551,FBtr0072552;parent_type=mRNA" - - - -	7830	562,931 – 563,034	-	4	113	71.70	-1.54	0.58	0.713546
5701	dm3.chr3L	565,249 – 565,353	- - - intron="intron;ID=intron_FBgn0035142:3_FBgn0035142:4;Name=hipk-in;Parent=FBtr0072551,FBtr0072552;parent_type=mRNA" - - - -	7831	565,249 – 565,353	+	4	104	66.51	-1.76	0.40	0.746015
5702	dm3.chr3L	568,154 – 568,260	- - - intron="intron;ID=intron_FBgn0035142:3_FBgn0035142:4;Name=hipk-in;Parent=FBtr0072551,FBtr0072552;parent_type=mRNA" - - - -	7832	568,154 – 568,260	+	5	120	80.83	-1.93	0.59	0.500000
5703	dm3.chr3L	568,584 – 568,636	- - - intron="intron;ID=intron_FBgn0035142:3_FBgn0035142:4;Name=hipk-in;Parent=FBtr0072551,FBtr0072552;parent_type=mRNA" - - - -	7833	568,584 – 568,636	+	3	52	97.44	-0.68	1.02	0.576275
5704	dm3.chr3L	583,289 – 583,367	- - - - - - - -	7834	583,289 – 583,367	-	12	87	78.28	-2.18	0.70	0.990949
5705	dm3.chr3L	585,750 – 585,827	- - - intron="intron;ID=intron_FBgn0035144:4_FBgn0035144:3;Name=CG17181-in;Parent=FBtr0072563;parent_type=mRNA" - - - -	7835	585,750 – 585,827	+	7	77	67.41	-1.87	0.57	0.998008
5705	dm3.chr3L	585,750 – 585,827		7836	585,750 – 585,827	-	7	77	67.41	-0.79	0.48	0.736158
5706	dm3.chr3L	598,823 – 598,959	- - - - - - - -	7837	598,823 – 598,927	-	6	113	61.51	-2.65	0.22	0.885151
5706	dm3.chr3L	598,823 – 598,959	- - - - - - - -	7838	598,852 – 598,959	-	6	114	53.95	-3.78	-0.00	0.911608
5707	dm3.chr3L	602,759 – 602,862	- - - intron="intron;ID=intron_FBgn0035146:6_FBgn0035146:5;Name=CG13893-in;Parent=FBtr0072562;parent_type=mRNA" - - - -	7839	602,759 – 602,862	-	5	107	69.80	-1.75	0.46	0.851830
5708	dm3.chr3L	604,346 – 604,408	- - - - - - - -	7840	604,346 – 604,408	+	7	62	72.72	-2.76	0.69	0.999318
5708	dm3.chr3L	604,346 – 604,408	- - - - - - - -	7841	604,346 – 604,408	-	7	62	72.72	-1.41	0.72	0.977638
5709	dm3.chr3L	608,769 – 608,867	- - - - - - - -	7842	608,769 – 608,867	+	7	119	77.14	-2.43	0.65	0.985990
5710	dm3.chr3L	620,530 – 620,625	- - - - - - - -	7843	620,530 – 620,625	+	3	99	92.57	-2.49	0.90	0.974347
5711	dm3.chr3L	620,757 – 620,860	- - - - - - - -	7844	620,757 – 620,860	-	6	112	76.95	-1.70	0.52	0.585341
5712	dm3.chr3L	621,149 – 621,258	- - - - - - - -	7845	621,149 – 621,258	-	10	120	85.03	-2.41	0.65	0.950762
5713	dm3.chr3L	625,742 – 625,838	- - - - - - - -	7846	625,742 – 625,838	+	4	104	80.63	-2.10	0.63	0.800994
5714	dm3.chr3L	636,189 – 636,283	- - - - - - - -	7847	636,189 – 636,283	+	4	100	94.50	-0.84	1.00	0.657876
5715	dm3.chr3L	642,204 – 642,298	FBnoncoding="pre_miRNA;ID=FBtr0304468;Name=ban-RM;Parent=FBgn0262451;Alias=CR43018-RM;Dbxref=FlyBase_Annotation_IDs:CR43018-RM,miRBase:MI0000387" - - - "Rfam_10.0=RF00727;bantam;AANI01017339.1/10975-11064\|1.9e-42" "Noncode_2.0=n178713_u177811_NW_045745_miRNA_Anopheles\|7.6e-08" "unique_Noncode_2.0=u177811_miRNA_Anopheles\|6.6e-08" "mirBase_v16=dya-bantam\|3.4e-41"	7848	642,204 – 642,298	+	13	102	94.35	-3.61	0.80	0.995065
5716	dm3.chr3L	648,430 – 648,543	- - - - - - - -	7849	648,430 – 648,543	+	6	115	72.12	-1.25	0.52	0.767974
5717	dm3.chr3L	649,936 – 650,049	- - - intron="intron;ID=intron_CG12030:2_CG12030:3;Name=Gale-in;Parent=FBtr0072556;parent_type=mRNA" - - - -	7850	649,936 – 650,049	-	6	118	69.60	-1.29	0.45	0.627745
5718	dm3.chr3L	661,889 – 661,984	- - - - - - - -	7851	661,889 – 661,979	+	4	101	67.90	-1.76	0.68	0.987595
				7852	661,889 – 661,979	-	4	101	67.90	-1.20	0.61	0.853955
				7853	661,889 – 661,984	+	4	101	70.37	-1.24	0.69	0.902879
				7854	661,889 – 661,984	-	4	101	70.37	-1.12	0.61	0.704448
5719	dm3.chr3L	663,920 – 663,995	- - - - - - - -	7855	663,920 – 663,995	+	10	79	79.59	-2.77	0.56	0.995331
5720	dm3.chr3L	667,857 – 667,959	- - - - - - - -	7856	667,857 – 667,959	-	6	120	77.94	-1.57	0.57	0.531606
5721	dm3.chr3L	668,168 – 668,281	- - - - - - - -	7857	668,168 – 668,281	+	8	117	69.78	-1.43	0.46	0.820831
5722	dm3.chr3L	670,106 – 670,159	- - - - - - - -	7858	670,106 – 670,159	+	4	53	74.53	-1.23	0.64	0.568440
5722	dm3.chr3L	670,106 – 670,159	- - - - - - - -	7859	670,106 – 670,159	-	4	53	74.53	-2.16	0.66	0.978598
5723	dm3.chr3L	676,508 – 676,609	- - - - - - - -	7860	676,508 – 676,609	+	9	102	85.81	-2.26	0.52	0.538356
5724	dm3.chr3L	684,910 – 685,023	- - - intron="intron;ID=intron_CG3371:1_CG3371:2;Name=CG3371-in;Parent=FBtr0072610;parent_type=mRNA" - - - -	7861	684,910 – 685,023	+	5	120	76.26	-1.69	0.70	0.924230
5725	dm3.chr3L	691,349 – 691,473	- - - - - - - -	7862	691,349 – 691,473	+	13	137	61.07	-2.22	0.45	0.999448
5726	dm3.chr3L	694,741 – 694,989	- - - - - - - -	7863	694,741 – 694,861	+	12	120	87.78	-2.52	0.56	0.799192
				7864	694,741 – 694,861	-	12	120	87.78	-2.19	0.59	0.633650
				7865	694,781 – 694,896	+	12	116	76.67	-1.82	0.50	0.860915
				7866	694,781 – 694,896	-	12	116	76.67	-1.80	0.68	0.980887
				7867	694,861 – 694,961	-	9	103	68.60	-1.84	0.45	0.973122
				7868	694,896 – 694,989	-	12	110	64.12	-1.93	0.33	0.943674
5727	dm3.chr3L	698,438 – 698,500	- - - intron="intron;ID=intron_CG13894:1_CG13894:2;Name=CG13894-in;Parent=FBtr0072606;parent_type=mRNA" - - - -	7869	698,438 – 698,500	+	6	62	75.71	-1.15	0.59	0.555528
5728	dm3.chr3L	704,610 – 704,701	- - - - - - - -	7870	704,610 – 704,701	+	6	106	81.39	-1.78	0.58	0.606873
5728	dm3.chr3L	704,610 – 704,701	- - - - - - - -	7871	704,610 – 704,701	-	6	106	81.39	-2.42	0.62	0.964021
5729	dm3.chr3L	707,315 – 707,424	- - CDS="CDS;ID=CDS_FBgn0035158:1_381;Name=CG13895-cds;Parent=FBtr0072605;parent_type=mRNA" - - - - -	7872	707,315 – 707,424	-	11	115	69.22	-1.16	0.41	0.640324
5730	dm3.chr3L	708,262 – 708,353	- - - - - - - -	7873	708,262 – 708,353	+	5	107	56.13	-1.98	0.20	0.524539
5731	dm3.chr3L	713,145 – 713,258	- - - - - - - -	7874	713,145 – 713,258	+	6	120	65.49	-1.33	0.50	0.955610
5732	dm3.chr3L	721,331 – 721,429	- - - - - - - -	7875	721,331 – 721,429	+	9	106	85.50	-1.92	0.61	0.551061
5733	dm3.chr3L	755,195 – 755,297	- - - - - - - -	7876	755,195 – 755,297	+	10	118	75.72	-2.22	0.40	0.772133
5733	dm3.chr3L	755,195 – 755,297	- - - - - - - -	7877	755,195 – 755,297	-	10	118	75.72	-1.58	0.47	0.500000
5734	dm3.chr3L	755,832 – 755,896	- - - - - - - -	7878	755,832 – 755,896	-	12	67	89.39	-1.83	0.71	0.539048
5735	dm3.chr3L	756,702 – 756,795	- - - - - - - -	7879	756,702 – 756,795	+	6	94	72.68	-1.55	0.44	0.521531
5736	dm3.chr3L	762,680 – 762,777	- - - - - - - -	7880	762,680 – 762,777	+	6	104	75.68	-2.61	0.62	0.994502
5736	dm3.chr3L	762,680 – 762,777	- - - - - - - -	7881	762,680 – 762,777	-	6	104	75.68	-2.01	0.59	0.948233
5737	dm3.chr3L	763,156 – 763,212	- - - - - - - -	7882	763,156 – 763,212	+	4	56	92.66	-2.27	0.89	0.952718
5738	dm3.chr3L	764,148 – 764,248	- - - - - - - -	7883	764,148 – 764,248	+	11	120	79.45	-1.27	0.69	0.660872
5739	dm3.chr3L	769,550 – 769,650	- - - - "Rfam_10.0=RF00005;tRNA;AACY021084543.1/599-688\|1.4e-12" - - "mirBase_v16=mmu-mir-1983\|6.4e-12"	7884	769,550 – 769,650	-	10	109	74.10	-0.86	0.61	0.637652
5740	dm3.chr3L	776,997 – 777,089	- - - - - - - -	7885	776,997 – 777,089	-	5	105	76.13	-1.34	0.62	0.574240
5741	dm3.chr3L	784,443 – 784,535	- - - - - - - -	7886	784,443 – 784,535	+	8	93	88.54	-3.56	0.51	0.969793
5741	dm3.chr3L	784,443 – 784,535	- - - - - - - -	7887	784,443 – 784,535	-	8	93	88.54	-2.35	0.60	0.600748
5742	dm3.chr3L	791,104 – 791,229	- - - - - - - -	7888	791,104 – 791,194	-	12	118	78.56	-2.36	0.70	0.991204
5742	dm3.chr3L	791,104 – 791,229	- - - - - - - -	7889	791,116 – 791,229	-	11	113	79.57	-1.00	0.86	0.891294
5743	dm3.chr3L	791,996 – 792,087	- - - - - - - -	7890	791,996 – 792,087	+	10	112	85.19	-2.03	0.68	0.790407
5743	dm3.chr3L	791,996 – 792,087	- - - - - - - -	7891	791,996 – 792,087	-	10	112	85.19	-2.30	0.79	0.970919
5744	dm3.chr3L	794,357 – 794,526	- - - - - - - -	7892	794,357 – 794,463	+	10	113	80.82	-2.06	0.52	0.838525
				7893	794,391 – 794,492	+	7	112	77.51	-2.06	0.62	0.964058
				7894	794,391 – 794,492	-	7	112	77.51	-2.84	0.48	0.984080
				7895	794,428 – 794,526	+	7	115	72.80	-1.27	0.51	0.590622
5745	dm3.chr3L	796,925 – 797,019	- - - - - - - -	7896	796,925 – 797,019	+	7	114	73.00	-1.96	0.43	0.798926
5746	dm3.chr3L	799,226 – 799,321	- - - - - - - -	7897	799,226 – 799,321	+	6	100	79.38	-1.98	0.53	0.689819
5747	dm3.chr3L	799,627 – 799,740	- - - - - - - -	7898	799,627 – 799,740	+	5	113	94.30	-1.90	0.88	0.823482
5748	dm3.chr3L	802,608 – 802,723	- - - - - - - -	7899	802,608 – 802,704	+	8	114	70.72	-1.41	0.57	0.944720
5748	dm3.chr3L	802,608 – 802,723	- - - - - - - -	7900	802,633 – 802,723	+	10	119	70.57	-1.39	0.56	0.938852
5749	dm3.chr3L	808,347 – 808,438	- - - - - - - -	7901	808,347 – 808,438	+	11	111	80.39	-2.71	0.64	0.989385
5749	dm3.chr3L	808,347 – 808,438	- - - - - - - -	7902	808,347 – 808,438	-	11	111	80.39	-3.08	0.51	0.985556
5750	dm3.chr3L	816,614 – 816,707	- - - - - - - -	7903	816,614 – 816,707	+	4	114	50.67	-2.99	0.37	0.999772
5750	dm3.chr3L	816,614 – 816,707	- - - - - - - -	7904	816,614 – 816,707	-	4	114	50.67	-1.75	0.49	0.998541
5751	dm3.chr3L	823,330 – 823,424	- - - - - - - -	7905	823,330 – 823,424	+	10	96	77.84	-1.75	0.53	0.814959
5752	dm3.chr3L	826,750 – 826,840	- - - - - - - -	7906	826,750 – 826,840	-	11	113	62.45	-0.92	0.48	0.870396
5753	dm3.chr3L	831,929 – 832,036	FBnoncoding="snoRNA;ID=FBtr0113600;Name=snoRNA:Psi18S-110-RA;Parent=FBgn0083057;Dbxref=FlyBase_Annotation_IDs:CR34631-RA,REFSEQ:NR_003846;score_text=Weakly" - - intron="intron;ID=intron_CG13900:3_CG13900:4;Name=CG13900-in;Parent=FBtr0072597;parent_type=mRNA" - - - -	7907	831,929 – 832,019	-	12	108	64.58	-2.00	0.51	0.998542
5753	dm3.chr3L	831,929 – 832,036		7908	831,946 – 832,036	-	12	98	59.40	-1.87	0.38	0.995983
5754	dm3.chr3L	832,489 – 832,596	FBnoncoding="snoRNA;ID=FBtr0113601;Name=snoRNA:Psi28S-3308-RA;Parent=FBgn0082973;Dbxref=FlyBase_Annotation_IDs:CR34632-RA,REFSEQ:NR_003847;score_text=Weakly" - - intron="intron;ID=intron_CG13900:2_CG13900:3;Name=CG13900-in;Parent=FBtr0072597;parent_type=mRNA" - - - -	7909	832,489 – 832,596	-	13	116	75.99	-0.92	0.62	0.679474
5755	dm3.chr3L	890,237 – 890,448	- - - intron="intron;ID=intron_CG32479:5_CG32479:6;Name=CG32479-in;Parent=FBtr0072589;parent_type=mRNA" - - - -	7910	890,237 – 890,348	+	11	112	65.38	-1.81	0.67	0.999551
				7911	890,237 – 890,348	-	11	112	65.38	-1.81	0.48	0.997773
				7912	890,271 – 890,383	+	12	119	70.64	-1.37	0.62	0.988590
				7913	890,271 – 890,383	-	12	119	70.64	-0.94	0.47	0.667290
				7914	890,308 – 890,417	+	12	119	67.48	-1.95	0.40	0.978253
				7915	890,348 – 890,448	+	11	114	56.45	-2.49	0.32	0.998384
5756	dm3.chr3L	913,432 – 913,485	- - - - - - - -	7916	913,432 – 913,485	+	5	53	94.15	-1.47	0.99	0.924876
5757	dm3.chr3L	917,005 – 917,104	- - - intron="intron;ID=intron_FBgn0261914:3_FBgn0261914:4;Name=Glut1-in;Parent=FBtr0306033,FBtr0306035,FBtr0306038;parent_type=mRNA" - - - -	7917	917,005 – 917,104	-	5	99	85.84	-1.68	0.78	0.753621
5758	dm3.chr3L	920,620 – 920,715	- - - intron="intron;ID=intron_FBgn0261914:3_FBgn0261914:4;Name=Glut1-in;Parent=FBtr0306033,FBtr0306035,FBtr0306038;parent_type=mRNA" - - - -	7918	920,620 – 920,715	-	5	105	72.12	-1.56	0.52	0.665470
5759	dm3.chr3L	923,029 – 923,125	- - - intron="intron;ID=intron_FBgn0261914:3_FBgn0261914:4;Name=Glut1-in;Parent=FBtr0306033,FBtr0306035,FBtr0306038;parent_type=mRNA" - - - -	7919	923,029 – 923,125	-	9	113	77.10	-1.89	0.64	0.952008
5760	dm3.chr3L	932,242 – 932,434	- - - intron="intron;ID=intron_FBgn0261914:3_FBgn0261914:4;Name=Glut1-in;Parent=FBtr0306033,FBtr0306035,FBtr0306038;parent_type=mRNA" - - - -	7920	932,242 – 932,357	+	3	120	53.06	-1.59	0.34	0.744757
				7921	932,277 – 932,396	+	3	120	52.51	-1.96	0.47	0.995438
				7922	932,317 – 932,434	+	3	120	52.59	-2.28	0.38	0.985375
5761	dm3.chr3L	937,203 – 937,319	- - - intron="intron;ID=intron_FBgn0261914:3_FBgn0261914:4;Name=Glut1-in;Parent=FBtr0306033,FBtr0306035,FBtr0306038;parent_type=mRNA" - - - -	7923	937,203 – 937,319	-	5	119	81.87	-2.15	0.62	0.826531
5762	dm3.chr3L	942,238 – 942,342	- - - intron="intron;ID=intron_FBgn0261914:3_FBgn0261914:4;Name=Glut1-in;Parent=FBtr0306033,FBtr0306035,FBtr0306038;parent_type=mRNA" - - - -	7924	942,238 – 942,342	+	5	104	80.24	-1.87	0.61	0.671619
5763	dm3.chr3L	945,241 – 945,336	- - - intron="intron;ID=intron_FBgn0261914:3_FBgn0261914:4;Name=Glut1-in;Parent=FBtr0306033,FBtr0306035,FBtr0306038;parent_type=mRNA" - - - -	7925	945,241 – 945,336	-	6	103	78.33	-1.61	0.62	0.736694
5764	dm3.chr3L	953,904 – 953,995	- - - intron="intron;ID=intron_FBgn0261914:4_FBgn0261914:7;Name=Glut1-in;Parent=FBtr0306032,FBtr0306033,FBtr0306035,FBtr0306038;parent_type=mRNA" - - - -	7926	953,904 – 953,995	+	7	100	77.67	-1.75	0.56	0.825352
5764	dm3.chr3L	953,904 – 953,995		7927	953,904 – 953,995	-	7	100	77.67	-2.27	0.50	0.930152
5765	dm3.chr3L	961,696 – 961,830	- - - intron="intron;ID=intron_FBgn0261914:6_FBgn0261914:7;Name=Glut1-in;Parent=FBtr0072616,FBtr0112909,FBtr0112910,FBtr0306034,FBtr0306036,FBtr0306037;parent_type=mRNA" - - - -	7928	961,696 – 961,794	+	6	112	56.51	-1.01	0.42	0.885608
5765	dm3.chr3L	961,696 – 961,830		7929	961,735 – 961,830	+	7	114	54.55	-1.22	0.30	0.642520
5766	dm3.chr3L	967,259 – 967,347	- - - - - - - -	7930	967,259 – 967,347	-	12	105	81.51	-2.27	0.45	0.571372
5767	dm3.chr3L	975,841 – 975,943	- - - intron="intron;ID=intron_FBgn0261914:11_FBgn0261914:12;Name=Glut1-in;Parent=FBtr0306033;parent_type=mRNA" - - - -	7931	975,841 – 975,943	+	6	111	72.58	-3.29	0.59	0.999526
5767	dm3.chr3L	975,841 – 975,943		7932	975,841 – 975,943	-	6	111	72.58	-3.68	0.62	0.999793
5768	dm3.chr3L	976,084 – 976,188	- - - intron="intron;ID=intron_FBgn0261914:11_FBgn0261914:12;Name=Glut1-in;Parent=FBtr0306033;parent_type=mRNA" - - - -	7933	976,084 – 976,188	+	8	118	78.26	-1.11	0.69	0.609126
5769	dm3.chr3L	1,010,891 – 1,010,981	- - - intron="intron;ID=intron_FBgn0024277:15_FBgn0024277:14;Name=trio-in;Parent=FBtr0072646;parent_type=mRNA" - - - -	7934	1,010,891 – 1,010,981	-	7	104	73.33	-1.34	0.70	0.965312
5770	dm3.chr3L	1,011,311 – 1,011,389	- - - intron="intron;ID=intron_FBgn0024277:15_FBgn0024277:14;Name=trio-in;Parent=FBtr0072646;parent_type=mRNA" - - - -	7935	1,011,311 – 1,011,389	+	5	78	92.18	-1.79	0.79	0.500000
5771	dm3.chr3L	1,014,692 – 1,014,796	- - - intron="intron;ID=intron_FBgn0024277:15_FBgn0024277:14;Name=trio-in;Parent=FBtr0072646;parent_type=mRNA" - - - -	7936	1,014,692 – 1,014,796	+	4	104	73.06	-1.10	0.71	0.698955
5772	dm3.chr3L	1,015,653 – 1,015,773	- - - intron="intron;ID=intron_FBgn0024277:15_FBgn0024277:14;Name=trio-in;Parent=FBtr0072646;parent_type=mRNA" - - - -	7937	1,015,653 – 1,015,773	+	5	120	89.58	-1.24	0.89	0.624041
5773	dm3.chr3L	1,016,227 – 1,016,363	- - - intron="intron;ID=intron_FBgn0024277:15_FBgn0024277:14;Name=trio-in;Parent=FBtr0072646;parent_type=mRNA" - - - -	7938	1,016,227 – 1,016,363	-	6	140	70.60	-0.91	0.54	0.626427
5774	dm3.chr3L	1,019,512 – 1,019,607	- - - intron="intron;ID=intron_FBgn0024277:16_FBgn0024277:15;Name=trio-in;Parent=FBtr0072646;parent_type=mRNA" - - - -	7939	1,019,512 – 1,019,607	+	7	113	72.50	-1.92	0.38	0.619506
5775	dm3.chr3L	1,054,226 – 1,054,347	- - - intron="intron;ID=intron_CG9097:1_CG9097:2;Name=bab1-in;Parent=FBtr0072642;parent_type=mRNA" - - - -	7940	1,054,226 – 1,054,316	-	4	98	47.43	-3.12	0.25	0.998790
				7941	1,054,257 – 1,054,347	+	4	94	52.85	-2.04	0.26	0.893300
				7942	1,054,257 – 1,054,347	-	4	94	52.85	-3.57	0.24	0.998896
5776	dm3.chr3L	1,060,257 – 1,060,350	- - - intron="intron;ID=intron_CG9097:1_CG9097:2;Name=bab1-in;Parent=FBtr0072642;parent_type=mRNA" - - - -	7943	1,060,257 – 1,060,350	+	4	104	71.28	-1.49	0.63	0.823907
5777	dm3.chr3L	1,064,950 – 1,065,055	- - - intron="intron;ID=intron_CG9097:1_CG9097:2;Name=bab1-in;Parent=FBtr0072642;parent_type=mRNA" - - - -	7944	1,064,950 – 1,065,055	+	10	116	68.58	-0.98	0.46	0.628394
5777	dm3.chr3L	1,064,950 – 1,065,055		7945	1,064,950 – 1,065,055	-	10	116	68.58	-1.01	0.46	0.654723
5778	dm3.chr3L	1,071,921 – 1,072,022	- - - intron="intron;ID=intron_CG9097:1_CG9097:2;Name=bab1-in;Parent=FBtr0072642;parent_type=mRNA" - - - -	7946	1,071,921 – 1,072,022	+	10	102	72.87	-1.81	0.75	0.996439
5779	dm3.chr3L	1,074,607 – 1,074,709	- - - intron="intron;ID=intron_CG9097:1_CG9097:2;Name=bab1-in;Parent=FBtr0072642;parent_type=mRNA" - - - -	7947	1,074,607 – 1,074,709	-	10	117	85.55	-2.06	0.60	0.592820
5780	dm3.chr3L	1,084,605 – 1,084,679	- - - intron="intron;ID=intron_CG9097:1_CG9097:6;Name=bab1-in;Parent=FBtr0072643;parent_type=mRNA" - - - -	7948	1,084,605 – 1,084,679	-	4	74	88.29	-1.67	0.78	0.546839
5781	dm3.chr3L	1,092,405 – 1,092,501	- - - intron="intron;ID=intron_CG9097:1_CG9097:6;Name=bab1-in;Parent=FBtr0072643;parent_type=mRNA" - - - -	7949	1,092,405 – 1,092,501	-	4	97	90.67	-1.77	0.88	0.846713
5782	dm3.chr3L	1,094,688 – 1,094,789	- - - intron="intron;ID=intron_CG9097:1_CG9097:6;Name=bab1-in;Parent=FBtr0072643;parent_type=mRNA" - - - -	7950	1,094,688 – 1,094,789	+	8	111	76.07	-1.43	0.50	0.516031
5783	dm3.chr3L	1,119,858 – 1,119,927	- - - - - - - -	7951	1,119,858 – 1,119,927	+	6	70	84.33	-2.54	0.65	0.958156
5784	dm3.chr3L	1,126,209 – 1,126,307	- - - - - - - -	7952	1,126,209 – 1,126,307	+	10	112	84.77	-4.11	0.32	0.973439
5785	dm3.chr3L	1,174,571 – 1,174,672	- - - - - - - -	7953	1,174,571 – 1,174,672	+	5	106	62.66	-1.20	0.42	0.826118
5786	dm3.chr3L	1,175,709 – 1,175,787	- - - intron="intron;ID=intron_CG9102:1_CG9102:2;Name=bab2-in;Parent=FBtr0072639;parent_type=mRNA" - - - -	7954	1,175,709 – 1,175,787	-	3	94	62.77	-1.85	0.47	0.860768
5787	dm3.chr3L	1,188,465 – 1,188,565	- - - - - - - -	7955	1,188,465 – 1,188,565	-	5	100	92.50	-2.86	0.78	0.964304
5788	dm3.chr3L	1,188,903 – 1,189,013	- - - - - - - -	7956	1,188,903 – 1,189,013	+	5	120	84.34	-1.84	0.80	0.878337
5789	dm3.chr3L	1,212,786 – 1,212,886	- - - intron="intron;ID=intron_FBgn0260963:1_FBgn0260963:2;Name=mwh-in;Parent=FBtr0072632;parent_type=mRNA" - - - -	7957	1,212,786 – 1,212,886	-	8	103	59.36	-0.92	0.49	0.957261
5790	dm3.chr3L	1,219,871 – 1,219,988	- - - intron="intron;ID=intron_FBgn0260963:1_FBgn0260963:2;Name=mwh-in;Parent=FBtr0072632;parent_type=mRNA" - - - -	7958	1,219,871 – 1,219,988	+	6	129	57.09	-1.61	0.59	0.998643
5790	dm3.chr3L	1,219,871 – 1,219,988		7959	1,219,871 – 1,219,988	-	6	129	57.09	-0.82	0.53	0.958110
5791	dm3.chr3L	1,255,214 – 1,255,318	- - - intron="intron;ID=intron_FBgn0035198:6_FBgn0035198:7;Name=CG9133-in;Parent=FBtr0100646,FBtr0100645;parent_type=mRNA" - - - -	7960	1,255,214 – 1,255,318	+	7	119	72.64	-1.61	0.48	0.761562
5792	dm3.chr3L	1,285,211 – 1,285,291	- - - intron="intron;ID=intron_FBgn0052333:4_FBgn0052333:6;Name=CG32333-in;Parent=FBtr0100256;parent_type=mRNA" - - - -	7961	1,285,211 – 1,285,291	+	7	89	68.82	-1.99	0.36	0.854102
5792	dm3.chr3L	1,285,211 – 1,285,291		7962	1,285,211 – 1,285,291	-	7	89	68.82	-1.73	0.45	0.932512
5793	dm3.chr3L	1,288,634 – 1,288,735	- - - intron="intron;ID=intron_FBgn0052333:5_FBgn0052333:7;Name=CG32333-in;Parent=FBtr0072662;parent_type=mRNA" - - - -	7963	1,288,634 – 1,288,735	-	8	113	73.24	-1.39	0.49	0.666382
5794	dm3.chr3L	1,294,647 – 1,294,711	- - - - - - - -	7964	1,294,647 – 1,294,711	+	10	65	79.28	-1.19	0.76	0.883901
5795	dm3.chr3L	1,322,250 – 1,322,352	- - CDS="CDS;ID=CDS_CG9184:4_305;Name=CG9184-cds;Parent=FBtr0072726;parent_type=mRNA" intron="intron;ID=intron_CG9155:8_CG9155:2;Name=Myo61F-in;Parent=FBtr0072673;parent_type=mRNA" - - - -	7965	1,322,250 – 1,322,352	+	7	102	74.75	-1.12	0.57	0.732979
5796	dm3.chr3L	1,348,196 – 1,348,325	- - - intron="intron;ID=intron_CG9181:10_CG9181:2;Name=Ptp61F-in;Parent=FBtr0072719;parent_type=mRNA" - - - -	7966	1,348,196 – 1,348,307	+	5	111	95.03	-2.93	0.90	0.989386
				7967	1,348,196 – 1,348,307	-	5	111	95.03	-2.05	0.90	0.906916
				7968	1,348,214 – 1,348,325	-	5	111	94.31	-1.23	0.95	0.696332
5797	dm3.chr3L	1,349,219 – 1,349,293	- - - - - - - -	7969	1,349,219 – 1,349,293	+	7	77	71.56	-2.12	0.52	0.992103
5797	dm3.chr3L	1,349,219 – 1,349,293	- - - - - - - -	7970	1,349,219 – 1,349,293	-	7	77	71.56	-1.90	0.44	0.938492
5798	dm3.chr3L	1,376,378 – 1,376,477	- - - intron="intron;ID=intron_CG1214:1_CG1214:2;Name=ru-in;Parent=FBtr0072681;parent_type=mRNA" - - - -	7971	1,376,378 – 1,376,477	-	10	112	69.25	-0.47	0.60	0.707003
5799	dm3.chr3L	1,379,933 – 1,380,027	FBnoncoding="tRNA;ID=FBtr0072682;Name=tRNA:CR32330-RA;Parent=FBgn0052330;Alias=CR32330-RA;Dbxref=FlyBase_Annotation_IDs:CR32330-RA;score_text=Weakly" tRNAscann="Glu_chr3L_trna3" - intron="intron;ID=intron_CG1214:1_CG1214:2;Name=ru-in;Parent=FBtr0072681;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|4.2e-34" - - -	7972	1,379,933 – 1,380,027	-	11	96	81.22	-1.64	0.69	0.915278
5800	dm3.chr3L	1,380,237 – 1,380,322	FBnoncoding="tRNA;ID=FBtr0072683;Name=tRNA:CR32328-RA;Parent=FBgn0052328;Alias=CR32328-RA;Dbxref=FlyBase_Annotation_IDs:CR32328-RA;score_text=Weakly" tRNAscann="Glu_chr3L_trna4" - intron="intron;ID=intron_CG1214:1_CG1214:2;Name=ru-in;Parent=FBtr0072681;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|3.7e-34" - - -	7973	1,380,237 – 1,380,322	+	12	85	87.32	-0.84	0.96	0.761869
5800	dm3.chr3L	1,380,237 – 1,380,322		7974	1,380,237 – 1,380,322	-	12	85	87.32	-1.49	0.97	0.959750
5801	dm3.chr3L	1,380,517 – 1,380,616	FBnoncoding="tRNA;ID=FBtr0072684;Name=tRNA:CR32329-RA;Parent=FBgn0052329;Alias=CR32329-RA;Dbxref=FlyBase_Annotation_IDs:CR32329-RA;score_text=Weakly" tRNAscann="Glu_chr3L_trna5" - intron="intron;ID=intron_CG1214:1_CG1214:2;Name=ru-in;Parent=FBtr0072681;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|4.5e-34" - - -	7975	1,380,517 – 1,380,616	+	13	110	68.26	-0.70	0.74	0.982932
5801	dm3.chr3L	1,380,517 – 1,380,616		7976	1,380,517 – 1,380,616	-	13	110	68.26	-1.59	0.70	0.998630
5802	dm3.chr3L	1,385,863 – 1,385,960	- - - intron="intron;ID=intron_CG1214:2_CG1214:3;Name=ru-in;Parent=FBtr0072681;parent_type=mRNA" - - - -	7977	1,385,863 – 1,385,960	-	9	105	64.97	-1.35	0.53	0.989177
5803	dm3.chr3L	1,391,970 – 1,392,045	- - - - - - - -	7978	1,391,970 – 1,392,045	+	5	76	93.90	-2.26	0.79	0.772783
5804	dm3.chr3L	1,397,930 – 1,398,008	FBnoncoding="tRNA;ID=FBtr0072686;Name=tRNA:E4:62Ab-RA;Parent=FBgn0011852;Dbxref=FlyBase_Annotation_IDs:CR32326-RA;score_text=Weakly" tRNAscann="Glu_chr3L_trna7" - - "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|3.3e-34" - - -	7979	1,397,930 – 1,398,008	+	12	97	82.44	-1.12	0.97	0.929230
5804	dm3.chr3L	1,397,930 – 1,398,008		7980	1,397,930 – 1,398,008	-	12	97	82.44	-1.94	0.95	0.988953
5805	dm3.chr3L	1,398,205 – 1,398,283	- - - - "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|4.0e-12" - - -	7981	1,398,205 – 1,398,283	+	6	82	66.93	-0.33	0.76	0.822170
5805	dm3.chr3L	1,398,205 – 1,398,283		7982	1,398,205 – 1,398,283	-	6	82	66.93	-1.22	0.79	0.988390
5806	dm3.chr3L	1,400,538 – 1,400,658	- - CDS="CDS;ID=CDS_FBgn0052320:6_381;Name=CG32320-cds;Parent=FBtr0300067;parent_type=mRNA" - - - - -	7983	1,400,538 – 1,400,658	+	12	120	63.99	-1.88	0.20	0.611312
5807	dm3.chr3L	1,401,425 – 1,401,559	FBnoncoding="tRNA;ID=FBtr0072690;Name=tRNA:E4:62Ad-RA;Parent=FBgn0011854;Dbxref=FlyBase_Annotation_IDs:CR32323-RA;score_text=Strongly" tRNAscann="Glu_chr3L_trna10" - - "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|6.4e-34" - - -	7984	1,401,425 – 1,401,559	+	11	144	61.98	-0.86	0.70	0.995600
5807	dm3.chr3L	1,401,425 – 1,401,559		7985	1,401,425 – 1,401,559	-	11	144	61.98	-0.81	0.53	0.975607
5808	dm3.chr3L	1,413,206 – 1,413,296	- - - - - - - -	7986	1,413,206 – 1,413,296	+	7	96	74.85	-3.08	0.29	0.936995
5808	dm3.chr3L	1,413,206 – 1,413,296	- - - - - - - -	7987	1,413,206 – 1,413,296	-	7	96	74.85	-2.56	0.34	0.870383
5809	dm3.chr3L	1,414,141 – 1,414,301	- - - - - - - -	7988	1,414,141 – 1,414,301	+	5	181	62.17	-1.81	0.29	0.593520
5810	dm3.chr3L	1,423,665 – 1,423,758	- - - - - - - -	7989	1,423,665 – 1,423,758	-	6	104	86.85	-1.51	0.82	0.686319
5811	dm3.chr3L	1,433,722 – 1,433,833	- - - intron="intron;ID=intron_FBgn0043865:3_FBgn0043865:1;Name=SA-2-in;Parent=FBtr0301789;parent_type=mRNA" - - - -	7990	1,433,722 – 1,433,833	+	10	115	70.52	-0.61	0.56	0.623305
5812	dm3.chr3L	1,446,099 – 1,446,189	- - - - - - - -	7991	1,446,099 – 1,446,189	+	5	94	88.28	-0.59	0.98	0.505352
5813	dm3.chr3L	1,454,863 – 1,454,970	- - - - - - - -	7992	1,454,863 – 1,454,970	-	6	129	71.70	-1.57	0.48	0.729577
5814	dm3.chr3L	1,458,102 – 1,458,209	- - - - - - - -	7993	1,458,102 – 1,458,209	+	4	110	65.64	-1.66	0.47	0.828348
5815	dm3.chr3L	1,466,258 – 1,466,392	- - - intron="intron;ID=intron_CG1004:2_CG1004:3;Name=rho-in;Parent=FBtr0072694;parent_type=mRNA" - - - -	7994	1,466,258 – 1,466,392	-	6	138	81.15	-2.23	0.69	0.966898
5816	dm3.chr3L	1,469,277 – 1,469,423	- - - - - - - -	7995	1,469,277 – 1,469,389	-	6	122	69.24	-1.26	0.69	0.957387
5816	dm3.chr3L	1,469,277 – 1,469,423	- - - - - - - -	7996	1,469,313 – 1,469,423	-	6	116	68.83	-1.36	0.69	0.980877
5817	dm3.chr3L	1,488,767 – 1,489,056	FBnoncoding="snoRNA;ID=FBtr0091635;Name=snoRNA:Psi28S-2622-RA;Parent=FBgn0086670;Alias=snoRNA:3-RA;Dbxref=FlyBase_Annotation_IDs:CR33656-RA,REFSEQ:NR_002472;score_text=Weakly" - - intron="intron;ID=intron_CG33166:1_CG33166:2;Name=stet-in;Parent=FBtr0072712;parent_type=mRNA" - - - -	7997	1,488,767 – 1,488,861	-	4	94	73.28	-1.77	0.60	0.872675
				7998	1,488,796 – 1,488,887	+	3	92	73.68	-2.46	0.79	0.992192
				7999	1,488,796 – 1,488,887	-	3	92	73.68	-3.48	0.56	0.996978
				8000	1,488,887 – 1,488,992	+	12	119	66.44	-1.38	0.39	0.734578
				8001	1,488,961 – 1,489,056	+	12	117	68.34	-1.27	0.40	0.591944
5818	dm3.chr3L	1,495,960 – 1,496,051	- - - intron="intron;ID=intron_CG12084:1_CG12084:2;Name=CG12084-in;Parent=FBtr0072711;parent_type=mRNA" - - - -	8002	1,495,960 – 1,496,051	+	4	100	71.94	-1.21	0.56	0.538463
5819	dm3.chr3L	1,516,837 – 1,516,932	- - - intron="intron;ID=intron_FBgn0011204:4_FBgn0011204:3;Name=cue-in;Parent=FBtr0072706;parent_type=mRNA" - - - -	8003	1,516,837 – 1,516,932	+	6	118	71.88	-1.07	0.61	0.599437
5820	dm3.chr3L	1,528,456 – 1,528,554	- - - intron="intron;ID=intron_CG12090:8_CG12090:9;Name=CG12090-in;Parent=FBtr0072703;parent_type=mRNA" - - - -	8004	1,528,456 – 1,528,554	-	4	98	89.18	-1.07	0.95	0.718179
5821	dm3.chr3L	1,544,614 – 1,544,717	- - - - - - - -	8005	1,544,614 – 1,544,717	-	5	108	92.93	-2.46	0.85	0.949520
5822	dm3.chr3L	1,548,100 – 1,548,359	- - - intron="intron;ID=intron_CG1049:5_CG1049:2;Name=Cct1-in;Parent=FBtr0072739;parent_type=mRNA" - - - -	8006	1,548,100 – 1,548,215	-	6	121	75.26	-1.88	0.55	0.919154
				8007	1,548,215 – 1,548,320	+	5	109	92.68	-1.92	0.87	0.850097
				8008	1,548,251 – 1,548,359	+	6	109	80.00	-3.12	0.58	0.995989
5823	dm3.chr3L	1,557,976 – 1,558,147	- - - - - - - -	8009	1,557,976 – 1,558,087	-	12	119	85.82	-1.71	0.67	0.551566
				8010	1,558,008 – 1,558,118	-	12	114	77.40	-1.85	0.52	0.902230
				8011	1,558,048 – 1,558,147	-	12	107	65.24	-2.24	0.57	0.999596
5824	dm3.chr3L	1,567,305 – 1,567,407	- - CDS="CDS;ID=CDS_CG12003:2_315;Name=CG12003-cds;Parent=FBtr0072744;parent_type=mRNA" - - - - -	8012	1,567,305 – 1,567,407	+	12	117	69.45	-1.08	0.47	0.785827
5825	dm3.chr3L	1,579,408 – 1,579,507	- - - intron="intron;ID=intron_FBgn0035237:1_FBgn0035237:2;Name=CG13917-in;Parent=FBtr0303993;parent_type=mRNA" - - - -	8013	1,579,408 – 1,579,507	+	4	101	76.67	-2.24	0.54	0.880077
5825	dm3.chr3L	1,579,408 – 1,579,507		8014	1,579,408 – 1,579,507	-	4	101	76.67	-1.64	0.62	0.702048
5826	dm3.chr3L	1,589,309 – 1,589,413	- - - intron="intron;ID=intron_FBgn0035237:2_FBgn0035237:3;Name=CG13917-in;Parent=FBtr0303993;parent_type=mRNA" - - - -	8015	1,589,309 – 1,589,413	+	4	105	82.03	-2.00	0.68	0.852351
5827	dm3.chr3L	1,603,159 – 1,603,262	- - CDS="CDS;ID=CDS_FBgn0035239:1_396;Name=CG18170-cds;Parent=FBtr0100190,FBtr0100191;parent_type=mRNA" - - - - -	8016	1,603,159 – 1,603,262	+	8	120	64.37	-0.97	0.43	0.594550
5828	dm3.chr3L	1,610,900 – 1,610,990	- - - intron="intron;ID=intron_FBgn0035240:12_FBgn0035240:13;Name=CG33791-in;Parent=FBtr0091792,FBtr0091794,FBtr0300891,FBtr0300892;parent_type=mRNA" - - - -	8017	1,610,900 – 1,610,990	-	8	94	73.36	-0.99	0.78	0.872710
5829	dm3.chr3L	1,616,490 – 1,616,591	- - CDS="CDS;ID=CDS_FBgn0035240:14_396;Name=CG33791-cds;Parent=FBtr0091795,FBtr0091793;parent_type=mRNA" - - - - -	8018	1,616,490 – 1,616,591	+	13	112	60.38	-1.43	0.27	0.651510
5830	dm3.chr3L	1,632,874 – 1,632,965	- - - intron="intron;ID=intron_FBgn0013342:3_FBgn0013342:2;Name=n-syb-in;Parent=FBtr0302310;parent_type=mRNA" - - - -	8019	1,632,874 – 1,632,965	-	6	96	64.24	-2.99	0.39	0.999173
5831	dm3.chr3L	1,639,188 – 1,639,241	- - - - - - - -	8020	1,639,188 – 1,639,241	-	7	56	65.18	-0.62	0.64	0.883668
5832	dm3.chr3L	1,654,488 – 1,654,589	- - - - - - - -	8021	1,654,488 – 1,654,589	-	12	108	64.41	-1.28	0.45	0.978915
5833	dm3.chr3L	1,655,729 – 1,655,859	- - - intron="intron;ID=intron_FBgn0035253:7_FBgn0035253:5;Name=CG7971-in;Parent=FBtr0072807,FBtr0072806;parent_type=mRNA" - - - -	8022	1,655,729 – 1,655,837	-	12	117	84.08	-1.96	0.82	0.967125
				8023	1,655,763 – 1,655,859	+	13	120	68.14	-0.92	0.51	0.716982
				8024	1,655,763 – 1,655,859	-	13	120	68.14	-1.73	0.57	0.991533
5834	dm3.chr3L	1,656,342 – 1,656,439	- - - intron="intron;ID=intron_FBgn0035253:7_FBgn0035253:5;Name=CG7971-in;Parent=FBtr0072807,FBtr0072806;parent_type=mRNA" - - - -	8025	1,656,342 – 1,656,439	-	8	111	75.19	-1.02	0.64	0.589022
5835	dm3.chr3L	1,661,673 – 1,661,773	- - - - - - - -	8026	1,661,673 – 1,661,773	+	11	107	65.16	-1.54	0.26	0.511968
5836	dm3.chr3L	1,661,885 – 1,661,983	- - CDS="CDS;ID=CDS_FBgn0035253:14_440;Name=CG7971-cds;Parent=FBtr0303107;parent_type=mRNA" - - - - -	8027	1,661,885 – 1,661,983	-	12	119	73.56	-1.10	0.53	0.545500
5837	dm3.chr3L	1,668,507 – 1,668,752	- - CDS="CDS;ID=CDS_FBgn0026372:3_400;Name=RpL23A-cds;Parent=FBtr0072805;parent_type=mRNA" - - - - -	8028	1,668,507 – 1,668,618	-	12	113	71.40	-1.50	0.40	0.836686
				8029	1,668,578 – 1,668,696	-	12	119	90.01	-2.27	0.71	0.849630
				8030	1,668,618 – 1,668,718	+	12	119	81.93	-2.14	0.62	0.920298
				8031	1,668,618 – 1,668,718	-	12	119	81.93	-1.89	0.66	0.885292
				8032	1,668,658 – 1,668,752	+	12	114	61.29	-1.54	0.36	0.913468
5838	dm3.chr3L	1,670,883 – 1,671,003	- - - intron="intron;ID=intron_CG13930:2_CG13930:3;Name=CG13930-in;Parent=FBtr0072803;parent_type=mRNA" - - - -	8033	1,670,883 – 1,671,003	-	4	120	63.65	-0.99	0.62	0.904504
5839	dm3.chr3L	1,677,955 – 1,678,045	- - - intron="intron;ID=intron_FBgn0035260:1_FBgn0035260:3;Name=CG7991-in;Parent=FBtr0303102;parent_type=mRNA" - - - -	8034	1,677,955 – 1,678,045	-	4	106	85.33	-1.95	0.72	0.672047
5840	dm3.chr3L	1,680,084 – 1,680,199	- - - intron="intron;ID=intron_FBgn0035260:1_FBgn0035260:3;Name=CG7991-in;Parent=FBtr0303102;parent_type=mRNA" - - - -	8035	1,680,084 – 1,680,199	-	4	117	80.84	-1.10	0.83	0.635472
5841	dm3.chr3L	1,680,882 – 1,680,985	- - - intron="intron;ID=intron_FBgn0035260:1_FBgn0035260:3;Name=CG7991-in;Parent=FBtr0303102;parent_type=mRNA" - - - -	8036	1,680,882 – 1,680,985	+	4	104	48.84	-2.09	0.19	0.795662
5842	dm3.chr3L	1,683,780 – 1,683,874	- - - intron="intron;ID=intron_FBgn0035260:1_FBgn0035260:3;Name=CG7991-in;Parent=FBtr0303102;parent_type=mRNA" - - - -	8037	1,683,780 – 1,683,874	+	8	107	60.73	-3.25	0.18	0.984987
5843	dm3.chr3L	1,686,752 – 1,686,808	- - - intron="intron;ID=intron_FBgn0035260:1_FBgn0035260:3;Name=CG7991-in;Parent=FBtr0303102;parent_type=mRNA" - - - -	8038	1,686,752 – 1,686,808	-	7	67	83.25	-1.83	0.69	0.777895
5844	dm3.chr3L	1,698,070 – 1,698,168	- - - - - - - -	8039	1,698,070 – 1,698,168	-	5	107	76.24	-1.69	0.60	0.868221
5845	dm3.chr3L	1,710,026 – 1,710,157	- - - - - - - -	8040	1,710,026 – 1,710,157	-	6	163	70.10	-1.57	0.43	0.516157
5846	dm3.chr3L	1,723,428 – 1,723,512	- - - intron="intron;ID=intron_FBgn0027594:11_FBgn0027594:10;Name=drpr-in;Parent=FBtr0072799;parent_type=mRNA" - - - -	8041	1,723,428 – 1,723,512	-	5	86	80.17	-3.46	0.41	0.975617
5847	dm3.chr3L	1,726,928 – 1,727,035	- - - intron="intron;ID=intron_FBgn0027594:14_FBgn0027594:13;Name=drpr-in;Parent=FBtr0072799,FBtr0072798;parent_type=mRNA" - - - -	8042	1,726,928 – 1,727,035	-	5	108	82.22	-2.61	0.51	0.860244
5848	dm3.chr3L	1,737,792 – 1,737,899	- - - - - - - -	8043	1,737,792 – 1,737,899	+	8	117	71.79	-2.16	0.30	0.580912
5848	dm3.chr3L	1,737,792 – 1,737,899	- - - - - - - -	8044	1,737,792 – 1,737,899	-	8	117	71.79	-1.88	0.46	0.932289
5849	dm3.chr3L	1,738,588 – 1,738,651	- - - - - - - -	8045	1,738,588 – 1,738,651	-	6	64	83.58	-2.25	0.61	0.866043
5850	dm3.chr3L	1,739,849 – 1,739,941	- - - intron="intron;ID=intron_FBgn0035266:3_FBgn0035266:5;Name=CG7995-in;Parent=FBtr0072770;parent_type=mRNA" - - - -	8046	1,739,849 – 1,739,941	+	6	101	80.00	-1.94	0.66	0.907834
5850	dm3.chr3L	1,739,849 – 1,739,941		8047	1,739,849 – 1,739,941	-	6	101	80.00	-2.51	0.58	0.963494
5851	dm3.chr3L	1,742,466 – 1,742,564	- - - intron="intron;ID=intron_FBgn0035266:4_FBgn0035266:5;Name=CG7995-in;Parent=FBtr0072771;parent_type=mRNA" - - - -	8048	1,742,466 – 1,742,564	+	8	120	69.10	-0.88	0.54	0.579856
5852	dm3.chr3L	1,749,454 – 1,749,568	- - CDS="CDS;ID=CDS_FBgn0035267:4_446;Name=CG13921-cds;Parent=FBtr0072773;parent_type=mRNA" - - - - -	8049	1,749,454 – 1,749,568	+	14	120	72.88	-1.27	0.48	0.864190
5853	dm3.chr3L	1,749,742 – 1,749,862	- - CDS="CDS;ID=CDS_FBgn0035267:6_447;Name=CG13921-cds;Parent=FBtr0303105;parent_type=mRNA" - - - - -	8050	1,749,742 – 1,749,862	+	8	120	78.04	-1.66	0.54	0.771953
5854	dm3.chr3L	1,756,213 – 1,756,315	- - - - - - - -	8051	1,756,213 – 1,756,315	+	6	108	66.11	-0.95	0.43	0.539357
5855	dm3.chr3L	1,775,107 – 1,775,314	- - - - - - - -	8052	1,775,107 – 1,775,214	+	5	120	74.29	-1.87	0.44	0.692418
5855	dm3.chr3L	1,775,107 – 1,775,314	- - - - - - - -	8053	1,775,214 – 1,775,314	-	4	117	71.19	-1.84	0.48	0.677998
5856	dm3.chr3L	1,781,212 – 1,781,332	- - CDS="CDS;ID=CDS_CG1977:5_274;Name=alpha-Spec-cds;Parent=FBtr0072789;parent_type=mRNA" - - - - -	8054	1,781,212 – 1,781,332	-	15	120	90.02	-2.37	0.77	0.953124
5857	dm3.chr3L	1,781,356 – 1,781,519	- - CDS="CDS;ID=CDS_CG1977:5_274;Name=alpha-Spec-cds;Parent=FBtr0072789;parent_type=mRNA" - - - - -	8055	1,781,356 – 1,781,475	-	15	120	88.50	-2.08	0.66	0.761845
				8056	1,781,395 – 1,781,515	-	15	120	91.06	-2.00	0.71	0.647722
				8057	1,781,399 – 1,781,519	-	15	120	90.97	-1.92	0.70	0.551973
5858	dm3.chr3L	1,784,560 – 1,784,655	- - - intron="intron;ID=intron_CG1977:3_CG1977:4;Name=alpha-Spec-in;Parent=FBtr0072789;parent_type=mRNA" - - - -	8058	1,784,560 – 1,784,655	-	8	112	70.44	-1.87	0.38	0.803410
5859	dm3.chr3L	1,811,474 – 1,811,527	- - - intron="intron;ID=intron_FBgn0027790:1_FBgn0027790:2;Name=GV1-in;Parent=FBtr0072784,FBtr0072785;parent_type=mRNA" - - - -	8059	1,811,474 – 1,811,527	+	5	53	94.71	-1.66	0.97	0.926888
5859	dm3.chr3L	1,811,474 – 1,811,527		8060	1,811,474 – 1,811,527	-	5	53	94.71	-1.75	0.93	0.882220
5860	dm3.chr3L	1,818,696 – 1,818,754	- - - intron="intron;ID=intron_FBgn0027790:2_FBgn0027790:3;Name=GV1-in;Parent=FBtr0072784,FBtr0072785;parent_type=mRNA" - - - -	8061	1,818,696 – 1,818,754	+	6	65	60.55	-0.27	0.57	0.746398
5861	dm3.chr3L	1,848,514 – 1,848,605	- - - - - - - -	8062	1,848,514 – 1,848,605	+	5	91	70.65	-0.65	0.62	0.525669
5862	dm3.chr3L	1,849,324 – 1,849,383	- - - - - - - -	8063	1,849,324 – 1,849,383	+	5	59	86.95	-1.22	0.84	0.500000
5863	dm3.chr3L	1,893,032 – 1,893,122	- - - - - - - -	8064	1,893,032 – 1,893,122	+	6	90	77.40	-2.14	0.46	0.824488
5864	dm3.chr3L	1,903,068 – 1,903,183	- - - intron="intron;ID=intron_FBgn0035290:8_FBgn0035290:7;Name=CG1887-in;Parent=FBtr0273261;parent_type=mRNA" - - - -	8065	1,903,068 – 1,903,183	+	6	120	71.11	-1.36	0.48	0.721592
5864	dm3.chr3L	1,903,068 – 1,903,183		8066	1,903,068 – 1,903,183	-	6	120	71.11	-1.24	0.51	0.732753
5865	dm3.chr3L	1,908,575 – 1,908,667	- - - intron="intron;ID=intron_FBgn0035290:8_FBgn0035290:7;Name=CG1887-in;Parent=FBtr0273261;parent_type=mRNA" - - - -	8067	1,908,575 – 1,908,667	-	7	109	68.99	-2.80	0.28	0.884675
5866	dm3.chr3L	1,913,604 – 1,913,706	- - - - - - - -	8068	1,913,604 – 1,913,706	+	5	107	79.04	-2.57	0.58	0.969437
5866	dm3.chr3L	1,913,604 – 1,913,706	- - - - - - - -	8069	1,913,604 – 1,913,706	-	5	107	79.04	-2.90	0.50	0.971249
5867	dm3.chr3L	1,913,843 – 1,913,954	- - - - - - - -	8070	1,913,843 – 1,913,954	-	7	121	65.46	-1.63	0.41	0.908346
5868	dm3.chr3L	1,922,134 – 1,922,227	- - - intron="intron;ID=intron_FBgn0250756:1_FBgn0250756:2;Name=Dbx-in;Parent=FBtr0290136;parent_type=mRNA" - - - -	8071	1,922,134 – 1,922,227	+	11	109	79.27	-1.57	0.85	0.969684
5869	dm3.chr3L	1,924,645 – 1,924,736	- - CDS="CDS;ID=CDS_FBgn0250756:2_440;Name=Dbx-cds;Parent=FBtr0290136;parent_type=mRNA" - - - - -	8072	1,924,645 – 1,924,736	-	6	91	73.29	-1.59	0.49	0.811262
5870	dm3.chr3L	1,925,639 – 1,925,741	FBnoncoding="tRNA;ID=FBtr0072840;Name=tRNA:CR32312-RA;Parent=FBgn0052312;Alias=CR32312-RA;Dbxref=FlyBase_Annotation_IDs:CR32312-RA;score_text=Weakly" tRNAscann="Cys_chr3L_trna12" - intron="intron;ID=intron_FBgn0250756:4_FBgn0250756:5;Name=Dbx-in;Parent=FBtr0290136;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AASR01018716.1/406-477\|2.8e-29" - - -	8073	1,925,639 – 1,925,741	+	12	117	67.79	-0.57	0.65	0.935162
5870	dm3.chr3L	1,925,639 – 1,925,741		8074	1,925,639 – 1,925,741	-	12	117	67.79	-1.01	0.56	0.961095
5871	dm3.chr3L	1,927,953 – 1,928,045	- - - intron="intron;ID=intron_FBgn0250756:4_FBgn0250756:5;Name=Dbx-in;Parent=FBtr0290136;parent_type=mRNA" - - - -	8075	1,927,953 – 1,928,045	-	7	104	67.27	-1.09	0.66	0.972887
5872	dm3.chr3L	1,928,298 – 1,928,392	- - - intron="intron;ID=intron_FBgn0250756:4_FBgn0250756:5;Name=Dbx-in;Parent=FBtr0290136;parent_type=mRNA" - - - -	8076	1,928,298 – 1,928,392	+	12	121	81.13	-2.18	0.74	0.979321
5873	dm3.chr3L	1,937,423 – 1,937,513	- - - intron="intron;ID=intron_CG5687:1_CG5687:2;Name=CG5687-in;Parent=FBtr0072858;parent_type=mRNA" - - - -	8077	1,937,423 – 1,937,513	+	12	91	76.72	-1.99	0.36	0.619472
5874	dm3.chr3L	1,982,191 – 1,982,293	- - - - - - - -	8078	1,982,191 – 1,982,293	-	12	114	80.31	-1.24	0.79	0.872608
5875	dm3.chr3L	1,984,991 – 1,985,099	- - - - - - - -	8079	1,984,991 – 1,985,099	+	5	134	71.87	-1.59	0.73	0.940853
5875	dm3.chr3L	1,984,991 – 1,985,099	- - - - - - - -	8080	1,984,991 – 1,985,099	-	5	134	71.87	-1.76	0.53	0.728613
5876	dm3.chr3L	2,000,924 – 2,001,015	- - - - - - - -	8081	2,000,924 – 2,001,015	+	5	91	90.27	-2.92	0.87	0.992080
5876	dm3.chr3L	2,000,924 – 2,001,015	- - - - - - - -	8082	2,000,924 – 2,001,015	-	5	91	90.27	-2.46	0.86	0.972546
5877	dm3.chr3L	2,001,217 – 2,001,278	- - - - - - - -	8083	2,001,217 – 2,001,278	+	6	73	83.90	-2.33	0.58	0.746397
5878	dm3.chr3L	2,024,893 – 2,024,983	- - - - - - - -	8084	2,024,893 – 2,024,983	+	10	115	80.77	-1.75	0.56	0.530308
5879	dm3.chr3L	2,026,268 – 2,026,362	- - - - - - - -	8085	2,026,268 – 2,026,362	+	8	102	80.63	-1.59	0.58	0.500000
5880	dm3.chr3L	2,032,571 – 2,032,683	- - - - - - - -	8086	2,032,571 – 2,032,683	-	6	120	76.38	-2.00	0.44	0.689170
5881	dm3.chr3L	2,036,631 – 2,036,692	- - - - - - - -	8087	2,036,631 – 2,036,692	+	7	75	64.25	-1.92	0.48	0.993837
5882	dm3.chr3L	2,037,532 – 2,037,652	- - CDS="CDS;ID=CDS_FBgn0259701:2_342;Name=CG42355-cds;Parent=FBtr0299954;parent_type=mRNA" - - - - -	8088	2,037,532 – 2,037,652	+	6	120	75.78	-2.23	0.50	0.957642
5882	dm3.chr3L	2,037,532 – 2,037,652		8089	2,037,532 – 2,037,652	-	6	120	75.78	-2.02	0.42	0.725764
5883	dm3.chr3L	2,087,058 – 2,087,233	- - CDS="CDS;ID=CDS_FBgn0003432:23_360;Name=sls-cds;Parent=FBtr0072849;parent_type=mRNA" - - - - -	8090	2,087,058 – 2,087,166	-	11	111	73.33	-1.53	0.40	0.632320
				8091	2,087,086 – 2,087,203	-	11	119	77.61	-1.54	0.77	0.976844
				8092	2,087,126 – 2,087,233	-	11	110	69.98	-2.55	0.78	0.999596
5884	dm3.chr3L	2,105,427 – 2,105,547	- - CDS="CDS;ID=CDS_FBgn0003432:36_360;Name=sls-cds;Parent=FBtr0072849;parent_type=mRNA" - - - - -	8093	2,105,427 – 2,105,547	-	15	120	77.83	-2.88	0.30	0.911459
5885	dm3.chr3L	2,114,135 – 2,114,234	- - CDS="CDS;ID=CDS_FBgn0003432:37_360;Name=sls-cds;Parent=FBtr0072849;parent_type=mRNA" - - - - -	8094	2,114,135 – 2,114,234	-	11	108	83.11	-2.53	0.48	0.777547
5886	dm3.chr3L	2,135,753 – 2,135,809	- - - intron="intron;ID=intron_FBgn0052311:14_FBgn0052311:13;Name=zormin-in;Parent=FBtr0089864,FBtr0110856,FBtr0110857,FBtr0110858;parent_type=mRNA" - - - -	8095	2,135,753 – 2,135,809	-	4	56	78.79	-1.40	0.74	0.659867
5887	dm3.chr3L	2,142,143 – 2,142,235	- - - intron="intron;ID=intron_FBgn0052311:20_FBgn0052311:19;Name=zormin-in;Parent=FBtr0089864,FBtr0110856,FBtr0110857,FBtr0110858;parent_type=mRNA" - - - -	8096	2,142,143 – 2,142,235	-	7	93	76.43	-1.88	0.63	0.979030
5888	dm3.chr3L	2,145,696 – 2,145,749	- - - intron="intron;ID=intron_FBgn0052311:20_FBgn0052311:19;Name=zormin-in;Parent=FBtr0089864,FBtr0110856,FBtr0110857,FBtr0110858;parent_type=mRNA" - - - -	8097	2,145,696 – 2,145,749	+	9	58	76.81	-1.99	0.37	0.513517
5889	dm3.chr3L	2,149,714 – 2,149,813	- - CDS="CDS;ID=CDS_FBgn0052311:20_332;Name=zormin-cds;Parent=FBtr0110858;parent_type=mRNA" - - - - -	8098	2,149,714 – 2,149,813	+	11	102	69.66	-0.76	0.56	0.924950
5890	dm3.chr3L	2,159,233 – 2,159,351	- - - intron="intron;ID=intron_FBgn0035308:8_FBgn0035308:6;Name=CG15822-in;Parent=FBtr0114630;parent_type=mRNA" - - - -	8099	2,159,233 – 2,159,351	+	9	120	72.37	-2.15	0.37	0.904482
5891	dm3.chr3L	2,160,578 – 2,160,674	- - - - - - - -	8100	2,160,578 – 2,160,674	+	6	115	62.57	-1.03	0.45	0.805795
5892	dm3.chr3L	2,192,030 – 2,192,122	- - - - - - - -	8101	2,192,030 – 2,192,122	+	8	93	76.43	-2.08	0.38	0.579415
5892	dm3.chr3L	2,192,030 – 2,192,122	- - - - - - - -	8102	2,192,030 – 2,192,122	-	8	93	76.43	-0.98	0.62	0.521816
5893	dm3.chr3L	2,196,475 – 2,196,569	- - - - - - - -	8103	2,196,475 – 2,196,569	+	11	117	69.17	-1.04	0.47	0.625173
5894	dm3.chr3L	2,197,518 – 2,197,657	- - CDS="CDS;ID=CDS_CG8960:2_291;Name=CG8960-cds;Parent=FBtr0072871;parent_type=mRNA" - - - - -	8104	2,197,518 – 2,197,623	+	11	116	80.37	-2.03	0.46	0.597358
5894	dm3.chr3L	2,197,518 – 2,197,657		8105	2,197,543 – 2,197,657	+	11	120	80.69	-2.39	0.40	0.686563
5895	dm3.chr3L	2,209,606 – 2,209,696	- - - - - - - -	8106	2,209,606 – 2,209,696	+	5	97	87.63	-1.04	0.91	0.595762
5895	dm3.chr3L	2,209,606 – 2,209,696	- - - - - - - -	8107	2,209,606 – 2,209,696	-	5	97	87.63	-1.91	0.86	0.919867
5896	dm3.chr3L	2,213,087 – 2,213,180	- - - - - - - -	8108	2,213,087 – 2,213,180	+	12	118	81.46	-2.24	0.66	0.954489
5897	dm3.chr3L	2,226,476 – 2,226,587	- - - - - - - -	8109	2,226,476 – 2,226,587	+	6	114	76.17	-1.45	0.62	0.685255
5898	dm3.chr3L	2,273,451 – 2,273,542	- - - - - - - -	8110	2,273,451 – 2,273,542	+	5	91	82.40	-1.93	0.65	0.739770
5898	dm3.chr3L	2,273,451 – 2,273,542	- - - - - - - -	8111	2,273,451 – 2,273,542	-	5	91	82.40	-2.00	0.59	0.609640
5899	dm3.chr3L	2,273,696 – 2,273,842	FBnoncoding="tRNA;ID=FBtr0072882;Name=tRNA:CR32303-RA;Parent=FBgn0052303;Alias=CR32303-RA;Dbxref=FlyBase_Annotation_IDs:CR32303-RA;score_text=Weakly" tRNAscann="Cys_chr3L_trna13" - - "Rfam_10.0=RF00005;tRNA;ABJB010216966.1/262-333\|1.0e-26" - - -	8112	2,273,696 – 2,273,842	+	13	165	68.86	-0.51	0.54	0.679040
5899	dm3.chr3L	2,273,696 – 2,273,842		8113	2,273,696 – 2,273,842	-	13	165	68.86	-1.20	0.52	0.954302
5900	dm3.chr3L	2,287,825 – 2,287,927	- - - intron="intron;ID=intron_FBgn0035330:1_FBgn0035330:3;Name=CG13802-in;Parent=FBtr0113127;parent_type=mRNA" - - - -	8114	2,287,825 – 2,287,927	+	6	114	80.00	-2.20	0.68	0.964742
5900	dm3.chr3L	2,287,825 – 2,287,927		8115	2,287,825 – 2,287,927	-	6	114	80.00	-1.57	0.62	0.578523
5901	dm3.chr3L	2,306,455 – 2,306,574	- - - - - - - -	8116	2,306,455 – 2,306,574	+	7	120	78.37	-1.66	0.59	0.862626
5902	dm3.chr3L	2,316,340 – 2,316,435	- - - - - - - -	8117	2,316,340 – 2,316,435	-	6	110	81.32	-1.85	0.64	0.732549
5903	dm3.chr3L	2,331,004 – 2,331,106	- - - intron="intron;ID=intron_CG8985:2_CG8985:3;Name=DmsR-1-in;Parent=FBtr0072887;parent_type=mRNA" - - - -	8118	2,331,004 – 2,331,106	-	6	121	66.01	-1.79	0.32	0.558576
5904	dm3.chr3L	2,346,258 – 2,346,350	- - - - - - - -	8119	2,346,258 – 2,346,350	+	6	98	70.14	-2.72	0.46	0.997291
5904	dm3.chr3L	2,346,258 – 2,346,350	- - - - - - - -	8120	2,346,258 – 2,346,350	-	6	98	70.14	-2.49	0.45	0.993507
5905	dm3.chr3L	2,362,816 – 2,362,986	- - - - - - - -	8121	2,362,816 – 2,362,926	-	5	110	92.45	-3.08	0.92	0.995529
				8122	2,362,849 – 2,362,955	+	5	113	83.68	-1.30	0.80	0.612735
				8123	2,362,849 – 2,362,955	-	5	113	83.68	-2.72	0.95	0.996760
				8124	2,362,886 – 2,362,986	-	5	116	71.59	-1.04	0.67	0.805341
5906	dm3.chr3L	2,366,012 – 2,366,117	- - - - - - - -	8125	2,366,012 – 2,366,117	-	5	105	88.68	-2.33	0.78	0.923133
5907	dm3.chr3L	2,373,659 – 2,373,709	- - - - - - - -	8126	2,373,659 – 2,373,709	+	6	63	62.81	-0.31	0.70	0.837502
5908	dm3.chr3L	2,378,641 – 2,378,695	- - - - - - - -	8127	2,378,641 – 2,378,695	+	5	54	97.41	-1.32	1.00	0.865678
5909	dm3.chr3L	2,380,587 – 2,380,683	- - - intron="intron;ID=intron_FBgn0035338:1_FBgn0035338:4;Name=CG13800-in;Parent=FBtr0303461;parent_type=mRNA" - - - -	8128	2,380,587 – 2,380,683	+	8	111	61.97	-1.72	0.34	0.917322
5909	dm3.chr3L	2,380,587 – 2,380,683		8129	2,380,587 – 2,380,683	-	8	111	61.97	-1.11	0.40	0.800277
5910	dm3.chr3L	2,397,458 – 2,397,563	- - - - - - - -	8130	2,397,458 – 2,397,563	-	6	107	80.88	-1.82	0.54	0.563513
5911	dm3.chr3L	2,408,252 – 2,408,347	- - CDS="CDS;ID=CDS_FBgn0035338:4_375;Name=CG13800-cds;Parent=FBtr0303462;parent_type=mRNA" - - - - -	8131	2,408,252 – 2,408,347	+	11	114	80.19	-2.11	0.69	0.975607
5912	dm3.chr3L	2,421,615 – 2,421,681	- - - intron="intron;ID=intron_FBgn0261551:3_FBgn0261551:6;Name=CG42669-in;Parent=FBtr0302685,FBtr0302676;parent_type=mRNA" - - - -	8132	2,421,615 – 2,421,681	+	6	66	71.62	-0.97	0.52	0.577090
5912	dm3.chr3L	2,421,615 – 2,421,681		8133	2,421,615 – 2,421,681	-	6	66	71.62	-1.06	0.54	0.730434
5913	dm3.chr3L	2,432,492 – 2,432,609	- - - intron="intron;ID=intron_FBgn0261551:4_FBgn0261551:6;Name=CG42669-in;Parent=FBtr0302678,FBtr0302679,FBtr0302682;parent_type=mRNA" - - - -	8134	2,432,492 – 2,432,609	+	7	120	63.42	-1.85	0.51	0.994716
5914	dm3.chr3L	2,446,392 – 2,446,494	- - - intron="intron;ID=intron_FBgn0261551:12_FBgn0261551:15;Name=CG42669-in;Parent=FBtr0302685,FBtr0302683,FBtr0302684,FBtr0302678,FBtr0302679,FBtr0302682,FBtr0302676,FBtr0302677;parent_type=mRNA" - - - -	8135	2,446,392 – 2,446,494	-	6	109	93.87	-2.43	0.85	0.943391
5915	dm3.chr3L	2,447,987 – 2,448,052	- - - intron="intron;ID=intron_FBgn0261551:12_FBgn0261551:15;Name=CG42669-in;Parent=FBtr0302685,FBtr0302683,FBtr0302684,FBtr0302678,FBtr0302679,FBtr0302682,FBtr0302676,FBtr0302677;parent_type=mRNA" - - - -	8136	2,447,987 – 2,448,052	+	4	65	52.56	-1.08	0.40	0.893183
5915	dm3.chr3L	2,447,987 – 2,448,052		8137	2,447,987 – 2,448,052	-	4	65	52.56	-0.95	0.64	0.994847
5916	dm3.chr3L	2,459,570 – 2,459,664	- - CDS="CDS;ID=CDS_FBgn0261551:15_305;Name=CG42669-cds;Parent=FBtr0302678,FBtr0302679;parent_type=mRNA" - - - - -	8138	2,459,570 – 2,459,664	-	12	119	76.92	-1.00	0.66	0.508136
5917	dm3.chr3L	2,469,254 – 2,469,316	- - - intron="intron;ID=intron_CG33232:28_CG33232:2;Name=CG33232-in;Parent=FBtr0100539;parent_type=mRNA" - - - -	8139	2,469,254 – 2,469,316	-	4	62	92.20	-1.39	0.92	0.724576
5918	dm3.chr3L	2,469,934 – 2,470,024	- - - intron="intron;ID=intron_CG33232:28_CG33232:2;Name=CG33232-in;Parent=FBtr0100539;parent_type=mRNA" - - - -	8140	2,469,934 – 2,470,024	+	5	90	96.00	-1.33	0.96	0.762208
5919	dm3.chr3L	2,471,789 – 2,471,844	- - - intron="intron;ID=intron_CG33232:28_CG33232:2;Name=CG33232-in;Parent=FBtr0100539;parent_type=mRNA" - - - -	8141	2,471,789 – 2,471,844	+	5	55	93.82	-1.50	0.87	0.530565
5920	dm3.chr3L	2,472,865 – 2,472,961	- - - intron="intron;ID=intron_CG33232:28_CG33232:2;Name=CG33232-in;Parent=FBtr0100539;parent_type=mRNA" - - - -	8142	2,472,865 – 2,472,961	-	4	111	79.82	-1.97	0.72	0.917404
5921	dm3.chr3L	2,475,465 – 2,475,578	- - CDS="CDS;ID=CDS_FBgn0035343:2_448;Name=CG16762-cds;Parent=FBtr0072968;parent_type=mRNA" - - - - -	8143	2,475,465 – 2,475,578	+	12	116	61.32	-1.62	0.28	0.860083
5922	dm3.chr3L	2,483,940 – 2,484,056	- - - intron="intron;ID=intron_CG33232:1_CG33232:2;Name=CG33232-in;Parent=FBtr0072920;parent_type=mRNA" - - - -	8144	2,483,940 – 2,484,056	-	5	119	86.35	-2.35	0.63	0.759532
5923	dm3.chr3L	2,493,432 – 2,493,524	- - - - - - - -	8145	2,493,432 – 2,493,524	+	6	110	80.03	-1.22	0.72	0.526165
5924	dm3.chr3L	2,499,551 – 2,499,676	- - CDS="CDS;ID=CDS_CG16758:4_332;Name=CG16758-cds;Parent=FBtr0072965,FBtr0072966;parent_type=mRNA" intron="intron;ID=intron_CG16758:3_CG16758:4;Name=CG16758-in;Parent=FBtr0072963,FBtr0072964,FBtr0072965,FBtr0072966;parent_type=mRNA" - - - -	8146	2,499,551 – 2,499,676	+	5	125	92.56	-1.27	0.97	0.840755
5924	dm3.chr3L	2,499,551 – 2,499,676		8147	2,499,551 – 2,499,676	-	5	125	92.56	-1.55	0.89	0.728500
5925	dm3.chr3L	2,506,669 – 2,506,796	- - - - - - - -	8148	2,506,669 – 2,506,777	+	7	115	78.37	-2.58	0.75	0.996548
				8149	2,506,669 – 2,506,777	-	7	115	78.37	-2.43	0.62	0.987166
				8150	2,506,705 – 2,506,796	+	6	94	79.35	-1.45	0.64	0.656166
5926	dm3.chr3L	2,512,119 – 2,512,210	- - - intron="intron;ID=intron_FBgn0010905:12_FBgn0010905:10;Name=Spn-in;Parent=FBtr0304615;parent_type=mRNA" - - - -	8151	2,512,119 – 2,512,210	+	12	112	73.18	-1.24	0.76	0.970410
5927	dm3.chr3L	2,514,061 – 2,514,166	- - CDS="CDS;ID=CDS_FBgn0010905:16_360;Name=Spn-cds;Parent=FBtr0304619,FBtr0304621;parent_type=mRNA" - - - - -	8152	2,514,061 – 2,514,166	+	13	110	82.31	-2.00	0.55	0.863080
5928	dm3.chr3L	2,521,232 – 2,521,333	- - - intron="intron;ID=intron_FBgn0010905:18_FBgn0010905:17;Name=Spn-in;Parent=FBtr0304613,FBtr0304614,FBtr0304615,FBtr0304616,FBtr0304617,FBtr0304619,FBtr0304620,FBtr0304621;parent_type=mRNA" - - - -	8153	2,521,232 – 2,521,333	+	7	104	68.08	-1.31	0.47	0.836590
5929	dm3.chr3L	2,527,304 – 2,527,415	- - - intron="intron;ID=intron_FBgn0010905:19_FBgn0010905:18;Name=Spn-in;Parent=FBtr0304613,FBtr0304614,FBtr0304615,FBtr0304616,FBtr0304617,FBtr0304618,FBtr0304619,FBtr0304620,FBtr0304621;parent_type=mRNA" - - - -	8154	2,527,304 – 2,527,415	+	5	117	82.84	-1.84	0.71	0.783580
5930	dm3.chr3L	2,540,536 – 2,540,647	- - - - - - - -	8155	2,540,536 – 2,540,647	+	5	122	88.65	-2.38	0.83	0.961199
5931	dm3.chr3L	2,541,808 – 2,541,904	- - - intron="intron;ID=intron_FBgn0010905:22_FBgn0010905:21;Name=Spn-in;Parent=FBtr0304613,FBtr0304614,FBtr0304615,FBtr0304616,FBtr0304617,FBtr0304618,FBtr0304620,FBtr0304621;parent_type=mRNA" - - - -	8156	2,541,808 – 2,541,904	+	10	106	60.37	-1.70	0.29	0.878877
5932	dm3.chr3L	2,542,250 – 2,542,393	- - - intron="intron;ID=intron_FBgn0010905:22_FBgn0010905:21;Name=Spn-in;Parent=FBtr0304613,FBtr0304614,FBtr0304615,FBtr0304616,FBtr0304617,FBtr0304618,FBtr0304620,FBtr0304621;parent_type=mRNA" - - - -	8157	2,542,250 – 2,542,356	+	6	108	71.41	-1.59	0.48	0.859002
5932	dm3.chr3L	2,542,250 – 2,542,393		8158	2,542,283 – 2,542,393	+	6	118	71.58	-1.63	0.44	0.610056
5933	dm3.chr3L	2,545,130 – 2,545,243	- - - intron="intron;ID=intron_FBgn0010905:22_FBgn0010905:21;Name=Spn-in;Parent=FBtr0304613,FBtr0304614,FBtr0304615,FBtr0304616,FBtr0304617,FBtr0304618,FBtr0304620,FBtr0304621;parent_type=mRNA" - - - -	8159	2,545,130 – 2,545,243	-	6	117	75.42	-1.44	0.53	0.595350
5934	dm3.chr3L	2,549,371 – 2,549,461	- - - intron="intron;ID=intron_FBgn0010905:22_FBgn0010905:21;Name=Spn-in;Parent=FBtr0304613,FBtr0304614,FBtr0304615,FBtr0304616,FBtr0304617,FBtr0304618,FBtr0304620,FBtr0304621;parent_type=mRNA" - - - -	8160	2,549,371 – 2,549,461	+	6	115	69.60	-1.14	0.51	0.524436
5935	dm3.chr3L	2,552,630 – 2,552,785	- - - intron="intron;ID=intron_FBgn0010905:22_FBgn0010905:21;Name=Spn-in;Parent=FBtr0304613,FBtr0304614,FBtr0304615,FBtr0304616,FBtr0304617,FBtr0304618,FBtr0304620,FBtr0304621;parent_type=mRNA" - - - -	8161	2,552,630 – 2,552,785	+	4	172	75.36	-3.50	0.45	0.993463
5936	dm3.chr3L	2,563,075 – 2,563,161	- - - intron="intron;ID=intron_CG16973:10_CG16973:11;Name=msn-in;Parent=FBtr0072956;parent_type=mRNA" - - - -	8162	2,563,075 – 2,563,161	-	5	91	82.11	-1.80	0.78	0.903955
5937	dm3.chr3L	2,572,455 – 2,572,563	- - - intron="intron;ID=intron_CG16973:3_CG16973:4;Name=msn-in;Parent=FBtr0072960,FBtr0072956,FBtr0072957,FBtr0072958,FBtr0072959;parent_type=mRNA" - - - -	8163	2,572,455 – 2,572,563	+	6	109	88.08	-1.82	0.74	0.647275
5938	dm3.chr3L	2,576,544 – 2,576,635	- - - intron="intron;ID=intron_CG16973:3_CG16973:4;Name=msn-in;Parent=FBtr0072960,FBtr0072956,FBtr0072957,FBtr0072958,FBtr0072959;parent_type=mRNA" - - - -	8164	2,576,544 – 2,576,635	+	5	95	91.07	-2.43	0.95	0.989704
5939	dm3.chr3L	2,591,812 – 2,591,913	- - - intron="intron;ID=intron_CG1044:8_CG1044:2;Name=dos-in;Parent=FBtr0072927;parent_type=mRNA" - - - -	8165	2,591,812 – 2,591,913	+	4	114	67.60	-1.01	0.57	0.532939
5940	dm3.chr3L	2,619,621 – 2,619,741	- - - intron="intron;ID=intron_CG12002:7_CG12002:3;Name=Pxn-in;Parent=FBtr0072952;parent_type=mRNA" - - - -	8166	2,619,621 – 2,619,741	+	4	120	79.58	-2.77	0.60	0.978173
5941	dm3.chr3L	2,621,917 – 2,622,011	- - - intron="intron;ID=intron_CG12002:7_CG12002:3;Name=Pxn-in;Parent=FBtr0072952;parent_type=mRNA" - - - -	8167	2,621,917 – 2,622,011	-	6	94	77.78	-1.27	0.67	0.734394
5942	dm3.chr3L	2,623,864 – 2,623,967	- - - intron="intron;ID=intron_CG12002:7_CG12002:3;Name=Pxn-in;Parent=FBtr0072952;parent_type=mRNA" - - - -	8168	2,623,864 – 2,623,967	-	6	103	84.03	-1.85	0.68	0.771555
5943	dm3.chr3L	2,628,323 – 2,628,419	- - - intron="intron;ID=intron_CG12002:7_CG12002:3;Name=Pxn-in;Parent=FBtr0072952;parent_type=mRNA" - - - -	8169	2,628,323 – 2,628,419	+	5	105	89.68	-1.97	0.82	0.829241
5943	dm3.chr3L	2,628,323 – 2,628,419		8170	2,628,323 – 2,628,419	-	5	105	89.68	-2.12	0.77	0.785779
5944	dm3.chr3L	2,690,555 – 2,690,689	- - - - - - - -	8171	2,690,555 – 2,690,689	+	7	159	66.52	-1.50	0.41	0.792038
5945	dm3.chr3L	2,700,194 – 2,700,344	- - - - - - - -	8172	2,700,194 – 2,700,314	-	5	120	84.33	-1.95	0.69	0.751170
				8173	2,700,224 – 2,700,344	+	5	120	70.75	-1.38	0.60	0.908913
				8174	2,700,224 – 2,700,344	-	5	120	70.75	-1.37	0.67	0.951680
5946	dm3.chr3L	2,707,779 – 2,707,839	- - - - - - - -	8175	2,707,779 – 2,707,839	-	3	60	97.78	-2.35	0.92	0.949366
5947	dm3.chr3L	2,715,366 – 2,715,465	- - - - - - - -	8176	2,715,366 – 2,715,465	+	8	116	77.88	-1.35	0.62	0.551339
5948	dm3.chr3L	2,720,960 – 2,721,061	- - CDS="CDS;ID=CDS_FBgn0052296:2_479;Name=Mrtf-cds;Parent=FBtr0072944,FBtr0290067;parent_type=mRNA" - - - - -	8177	2,720,960 – 2,721,061	+	10	117	64.79	-1.21	0.44	0.908133
5949	dm3.chr3L	2,722,089 – 2,722,184	- - CDS="CDS;ID=CDS_FBgn0052296:2_479;Name=Mrtf-cds;Parent=FBtr0072944,FBtr0290067;parent_type=mRNA" - - - - -	8178	2,722,089 – 2,722,184	-	9	109	66.90	-1.19	0.40	0.623695
5950	dm3.chr3L	2,726,137 – 2,726,248	- - - intron="intron;ID=intron_FBgn0052296:6_FBgn0052296:5;Name=Mrtf-in;Parent=FBtr0072944,FBtr0290067,FBtr0306331,FBtr0306332;parent_type=mRNA" - - - -	8179	2,726,137 – 2,726,248	+	4	111	75.19	-1.18	0.75	0.753574
5951	dm3.chr3L	2,729,387 – 2,729,487	- - - - - - - -	8180	2,729,387 – 2,729,487	+	13	119	74.44	-0.73	0.66	0.813990
5951	dm3.chr3L	2,729,387 – 2,729,487	- - - - - - - -	8181	2,729,387 – 2,729,487	-	13	119	74.44	-1.96	0.71	0.997022
5952	dm3.chr3L	2,736,668 – 2,736,719	- - - - - - - -	8182	2,736,668 – 2,736,719	+	11	64	89.02	-1.50	0.82	0.595619
5953	dm3.chr3L	2,748,953 – 2,749,034	- - - - - - - -	8183	2,748,953 – 2,749,034	-	7	85	68.24	-0.75	0.57	0.543268
5954	dm3.chr3L	2,756,549 – 2,756,770	- - - - - - - -	8184	2,756,549 – 2,756,641	+	6	101	71.08	-2.30	0.41	0.916935
				8185	2,756,641 – 2,756,732	-	11	93	77.58	-0.59	0.71	0.567400
				8186	2,756,656 – 2,756,770	-	11	120	88.84	-1.49	0.83	0.732925
5955	dm3.chr3L	2,785,838 – 2,785,978	- - - - - - - -	8187	2,785,838 – 2,785,940	+	6	103	65.42	-2.44	0.61	0.999610
				8188	2,785,838 – 2,785,940	-	6	103	65.42	-2.05	0.53	0.997718
				8189	2,785,866 – 2,785,978	+	5	114	82.22	-3.01	0.72	0.995314
				8190	2,785,866 – 2,785,978	-	5	114	82.22	-2.62	0.46	0.741559
5956	dm3.chr3L	2,786,203 – 2,786,301	- - - - - - - -	8191	2,786,203 – 2,786,301	-	6	99	80.50	-2.10	0.59	0.895039
5957	dm3.chr3L	2,794,528 – 2,794,627	- - CDS="CDS;ID=CDS_FBgn0035376:5_375;Name=CG2083-cds;Parent=FBtr0289987;parent_type=mRNA" - - - - -	8192	2,794,528 – 2,794,627	+	12	111	83.15	-1.77	0.75	0.932072
5957	dm3.chr3L	2,794,528 – 2,794,627		8193	2,794,528 – 2,794,627	-	12	111	83.15	-3.94	0.80	0.999454
5958	dm3.chr3L	2,798,741 – 2,798,836	- - - intron="intron;ID=intron_FBgn0035376:8_FBgn0035376:7;Name=CG2083-in;Parent=FBtr0289987;parent_type=mRNA" - - - -	8194	2,798,741 – 2,798,836	+	4	97	92.93	-1.81	0.82	0.575747
5959	dm3.chr3L	2,803,248 – 2,803,343	- - - - - - - -	8195	2,803,248 – 2,803,343	+	6	104	80.09	-2.99	0.58	0.990063
5959	dm3.chr3L	2,803,248 – 2,803,343	- - - - - - - -	8196	2,803,248 – 2,803,343	-	6	104	80.09	-2.67	0.58	0.972771
5960	dm3.chr3L	2,805,863 – 2,805,993	- - - - - - - -	8197	2,805,863 – 2,805,958	+	9	117	82.41	-2.99	0.68	0.993092
				8198	2,805,863 – 2,805,958	-	9	117	82.41	-2.24	0.69	0.939889
				8199	2,805,882 – 2,805,993	+	7	120	82.86	-2.25	0.76	0.957619
5961	dm3.chr3L	2,807,683 – 2,807,778	- - - - - - - -	8200	2,807,683 – 2,807,778	+	3	95	92.83	-2.07	0.93	0.950158
5961	dm3.chr3L	2,807,683 – 2,807,778	- - - - - - - -	8201	2,807,683 – 2,807,778	-	3	95	92.83	-2.20	0.96	0.978547
5962	dm3.chr3L	2,810,843 – 2,810,899	- - - - - - - -	8202	2,810,843 – 2,810,899	+	4	64	61.94	-2.72	0.58	0.999352
5963	dm3.chr3L	2,816,962 – 2,817,063	- - - - - - - -	8203	2,816,962 – 2,817,061	-	9	112	69.68	-1.38	0.43	0.721808
5963	dm3.chr3L	2,816,962 – 2,817,063	- - - - - - - -	8204	2,816,964 – 2,817,063	-	9	112	69.81	-1.36	0.47	0.834930
5964	dm3.chr3L	2,817,667 – 2,817,759	- - - - - - - -	8205	2,817,667 – 2,817,759	+	10	101	76.74	-2.12	0.68	0.993113
5965	dm3.chr3L	2,818,034 – 2,818,129	- - - - - - - -	8206	2,818,034 – 2,818,129	+	6	98	94.41	-1.55	0.88	0.627721
5966	dm3.chr3L	2,833,497 – 2,833,591	- - - - - - - -	8207	2,833,497 – 2,833,591	+	6	96	74.64	-1.97	0.41	0.691797
5967	dm3.chr3L	2,837,726 – 2,837,826	- - - - - - - -	8208	2,837,726 – 2,837,820	+	10	105	82.63	-1.75	0.73	0.893987
5967	dm3.chr3L	2,837,726 – 2,837,826	- - - - - - - -	8209	2,837,733 – 2,837,826	+	12	104	77.26	-1.71	0.54	0.857590
5968	dm3.chr3L	2,838,684 – 2,838,743	- - - - - - - -	8210	2,838,684 – 2,838,743	+	4	59	96.05	-0.97	1.00	0.711112
5969	dm3.chr3L	2,838,865 – 2,838,962	- - - - - - - -	8211	2,838,865 – 2,838,962	-	7	110	65.85	-1.92	0.28	0.592019
5970	dm3.chr3L	2,849,815 – 2,849,877	- - - intron="intron;ID=intron_FBgn0035378:2_FBgn0035378:1;Name=CG9973-in;Parent=FBtr0113128;parent_type=mRNA" - - - -	8212	2,849,815 – 2,849,877	+	5	62	96.77	-1.93	1.01	0.977606
5970	dm3.chr3L	2,849,815 – 2,849,877		8213	2,849,815 – 2,849,877	-	5	62	96.77	-1.57	0.95	0.826822
5971	dm3.chr3L	2,856,707 – 2,856,811	- - - intron="intron;ID=intron_FBgn0035378:3_FBgn0035378:2;Name=CG9973-in;Parent=FBtr0113128;parent_type=mRNA" - - - -	8214	2,856,707 – 2,856,811	-	12	116	85.67	-2.24	0.76	0.961899
5972	dm3.chr3L	2,862,032 – 2,862,122	- - - intron="intron;ID=intron_FBgn0035378:3_FBgn0035378:2;Name=CG9973-in;Parent=FBtr0113128;parent_type=mRNA" - - - -	8215	2,862,032 – 2,862,122	-	6	107	73.17	-0.74	0.70	0.572103
5973	dm3.chr3L	2,869,348 – 2,869,422	- - - intron="intron;ID=intron_FBgn0035378:3_FBgn0035378:2;Name=CG9973-in;Parent=FBtr0113128;parent_type=mRNA" - - - -	8216	2,869,348 – 2,869,422	-	6	81	69.47	-1.51	0.49	0.883607
5974	dm3.chr3L	2,870,251 – 2,870,348	- - CDS="CDS;ID=CDS_FBgn0035378:4_370;Name=CG9973-cds;Parent=FBtr0113128;parent_type=mRNA" - - - - -	8217	2,870,251 – 2,870,348	-	9	106	74.97	-1.55	0.51	0.800377
5975	dm3.chr3L	2,870,710 – 2,870,875	- - CDS="CDS;ID=CDS_FBgn0035378:4_370;Name=CG9973-cds;Parent=FBtr0113128;parent_type=mRNA" - - - - -	8218	2,870,710 – 2,870,808	+	3	107	82.05	-1.77	0.76	0.714520
				8219	2,870,741 – 2,870,845	+	4	105	64.11	-1.60	0.54	0.971540
				8220	2,870,741 – 2,870,845	-	4	105	64.11	-2.06	0.54	0.994040
				8221	2,870,778 – 2,870,875	-	3	97	93.13	-1.90	0.89	0.849980
5976	dm3.chr3L	2,870,980 – 2,871,074	- - CDS="CDS;ID=CDS_FBgn0035378:4_370;Name=CG9973-cds;Parent=FBtr0113128;parent_type=mRNA" - - - - -	8222	2,870,980 – 2,871,074	+	9	105	73.72	-2.10	0.47	0.956380
5977	dm3.chr3L	2,874,290 – 2,874,382	- - - - - - - -	8223	2,874,290 – 2,874,382	+	11	108	79.73	-0.88	0.76	0.565599
5978	dm3.chr3L	2,875,260 – 2,875,365	- - - - - - - -	8224	2,875,260 – 2,875,365	+	7	110	73.97	-1.92	0.45	0.765842
5979	dm3.chr3L	2,880,788 – 2,880,950	- - - - - - - -	8225	2,880,788 – 2,880,950	+	8	169	74.68	-1.37	0.54	0.855050
5979	dm3.chr3L	2,880,788 – 2,880,950	- - - - - - - -	8226	2,880,788 – 2,880,950	-	8	169	74.68	-1.79	0.51	0.944741
5980	dm3.chr3L	2,883,007 – 2,883,070	- - - - - - - -	8227	2,883,007 – 2,883,070	+	6	64	75.47	-1.59	0.66	0.949457
5980	dm3.chr3L	2,883,007 – 2,883,070	- - - - - - - -	8228	2,883,007 – 2,883,070	-	6	64	75.47	-0.96	0.72	0.790548
5981	dm3.chr3L	2,887,263 – 2,887,361	- - - intron="intron;ID=intron_CG9972:3_CG9972:4;Name=spz5-in;Parent=FBtr0073011;parent_type=mRNA" - - - -	8229	2,887,263 – 2,887,361	-	6	109	77.92	-1.73	0.53	0.581576
5982	dm3.chr3L	2,894,864 – 2,894,971	- - - - - - - -	8230	2,894,864 – 2,894,971	-	7	109	70.25	-0.96	0.47	0.604420
5983	dm3.chr3L	2,910,040 – 2,910,092	- - - intron="intron;ID=intron_FBgn0262593:3_FBgn0262593:4;Name=Shab-in;Parent=FBtr0305201,FBtr0305202,FBtr0305203,FBtr0305204,FBtr0305205,FBtr0305206,FBtr0305207,FBtr0305208,FBtr0305209;parent_type=mRNA" - - - -	8231	2,910,040 – 2,910,092	-	6	52	85.13	-2.06	0.70	0.872627
5984	dm3.chr3L	2,916,398 – 2,916,492	- - CDS="CDS;ID=CDS_FBgn0035380:1_322;Name=CG9970-cds;Parent=FBtr0073010;parent_type=mRNA" intron="intron;ID=intron_FBgn0262593:3_FBgn0262593:4;Name=Shab-in;Parent=FBtr0305201,FBtr0305202,FBtr0305203,FBtr0305204,FBtr0305205,FBtr0305206,FBtr0305207,FBtr0305208,FBtr0305209;parent_type=mRNA" - - - -	8232	2,916,398 – 2,916,492	+	3	118	57.06	-0.06	0.74	0.557223
5985	dm3.chr3L	2,917,671 – 2,917,763	- - - intron="intron;ID=intron_FBgn0262593:3_FBgn0262593:4;Name=Shab-in;Parent=FBtr0305201,FBtr0305202,FBtr0305203,FBtr0305204,FBtr0305205,FBtr0305206,FBtr0305207,FBtr0305208,FBtr0305209;parent_type=mRNA" - - - -	8233	2,917,671 – 2,917,763	+	5	113	72.37	-0.71	0.68	0.519730
5986	dm3.chr3L	2,919,506 – 2,919,601	- - - intron="intron;ID=intron_FBgn0262593:3_FBgn0262593:4;Name=Shab-in;Parent=FBtr0305201,FBtr0305202,FBtr0305203,FBtr0305204,FBtr0305205,FBtr0305206,FBtr0305207,FBtr0305208,FBtr0305209;parent_type=mRNA" - - - -	8234	2,919,506 – 2,919,601	+	5	109	63.87	-1.64	0.48	0.969383
5987	dm3.chr3L	2,920,139 – 2,920,196	- - - intron="intron;ID=intron_FBgn0262593:3_FBgn0262593:4;Name=Shab-in;Parent=FBtr0305201,FBtr0305202,FBtr0305203,FBtr0305204,FBtr0305205,FBtr0305206,FBtr0305207,FBtr0305208,FBtr0305209;parent_type=mRNA" - - - -	8235	2,920,139 – 2,920,196	-	12	63	78.42	-1.32	0.59	0.628732
5988	dm3.chr3L	2,920,328 – 2,920,437	- - - intron="intron;ID=intron_FBgn0262593:3_FBgn0262593:4;Name=Shab-in;Parent=FBtr0305201,FBtr0305202,FBtr0305203,FBtr0305204,FBtr0305205,FBtr0305206,FBtr0305207,FBtr0305208,FBtr0305209;parent_type=mRNA" - - - -	8236	2,920,328 – 2,920,437	+	5	109	75.78	-1.11	0.62	0.507813
5989	dm3.chr3L	2,923,073 – 2,923,136	- - - intron="intron;ID=intron_FBgn0262593:3_FBgn0262593:4;Name=Shab-in;Parent=FBtr0305201,FBtr0305202,FBtr0305203,FBtr0305204,FBtr0305205,FBtr0305206,FBtr0305207,FBtr0305208,FBtr0305209;parent_type=mRNA" - - - -	8237	2,923,073 – 2,923,136	+	7	72	68.90	-1.17	0.48	0.719200
5990	dm3.chr3L	2,938,114 – 2,938,214	- - - intron="intron;ID=intron_FBgn0262593:5_FBgn0262593:6;Name=Shab-in;Parent=FBtr0305201,FBtr0305202,FBtr0305203,FBtr0305204,FBtr0305205,FBtr0305206,FBtr0305207,FBtr0305208,FBtr0305209;parent_type=mRNA" - - - -	8238	2,938,114 – 2,938,214	-	6	105	93.51	-1.96	0.77	0.516762
5991	dm3.chr3L	2,938,895 – 2,938,957	- - - intron="intron;ID=intron_FBgn0262593:5_FBgn0262593:6;Name=Shab-in;Parent=FBtr0305201,FBtr0305202,FBtr0305203,FBtr0305204,FBtr0305205,FBtr0305206,FBtr0305207,FBtr0305208,FBtr0305209;parent_type=mRNA" - - - -	8239	2,938,895 – 2,938,957	+	8	75	84.21	-1.01	0.90	0.721293
5992	dm3.chr3L	2,941,034 – 2,941,152	- - CDS="CDS;ID=CDS_FBgn0262593:6_470;Name=Shab-cds;Parent=FBtr0305202,FBtr0305207;parent_type=mRNA" - - - - -	8240	2,941,034 – 2,941,150	-	14	116	73.01	-1.84	0.53	0.992074
5992	dm3.chr3L	2,941,034 – 2,941,152		8241	2,941,036 – 2,941,152	-	14	116	73.06	-2.19	0.59	0.998527
5993	dm3.chr3L	2,942,038 – 2,942,139	- - - intron="intron;ID=intron_FBgn0262593:6_FBgn0262593:7;Name=Shab-in;Parent=FBtr0305202,FBtr0305204;parent_type=mRNA" - - - -	8242	2,942,038 – 2,942,139	-	8	106	67.54	-2.52	0.19	0.725890
5994	dm3.chr3L	2,945,151 – 2,945,242	- - - intron="intron;ID=intron_FBgn0262593:7_FBgn0262593:10;Name=Shab-in;Parent=FBtr0305202,FBtr0305204;parent_type=mRNA" - - - -	8243	2,945,151 – 2,945,242	-	6	92	85.91	-1.74	0.82	0.890797
5995	dm3.chr3L	2,948,662 – 2,948,868	- - CDS="CDS;ID=CDS_FBgn0262593:11_470;Name=Shab-cds;Parent=FBtr0305202;parent_type=mRNA" - - - - -	8244	2,948,662 – 2,948,768	+	9	119	70.39	-0.72	0.61	0.772002
				8245	2,948,662 – 2,948,768	-	9	119	70.39	-1.01	0.52	0.733821
				8246	2,948,688 – 2,948,794	+	9	121	67.81	-0.93	0.58	0.910635
				8247	2,948,688 – 2,948,794	-	9	121	67.81	-0.95	0.48	0.687493
				8248	2,948,728 – 2,948,834	+	6	106	77.61	-1.23	0.61	0.596934
				8249	2,948,768 – 2,948,868	-	6	100	83.00	-1.72	0.60	0.500000
5996	dm3.chr3L	2,958,548 – 2,958,645	- - - - - - - -	8250	2,958,548 – 2,958,645	+	6	98	63.13	-1.68	0.39	0.967334
5996	dm3.chr3L	2,958,548 – 2,958,645	- - - - - - - -	8251	2,958,548 – 2,958,645	-	6	98	63.13	-1.71	0.35	0.932804
5997	dm3.chr3L	2,965,825 – 2,965,922	- - - - - - - -	8252	2,965,825 – 2,965,922	+	8	108	68.82	-1.25	0.54	0.901205
5998	dm3.chr3L	2,974,704 – 2,974,803	- - - - - - - -	8253	2,974,704 – 2,974,803	+	6	115	77.11	-1.10	0.71	0.654279
5999	dm3.chr3L	2,979,173 – 2,979,267	- - - - - - - -	8254	2,979,173 – 2,979,267	+	6	103	65.07	-1.34	0.39	0.603165
6000	dm3.chr3L	2,979,366 – 2,979,456	- - - - - - - -	8255	2,979,366 – 2,979,456	+	6	91	85.50	-2.32	0.73	0.952859
6000	dm3.chr3L	2,979,366 – 2,979,456	- - - - - - - -	8256	2,979,366 – 2,979,456	-	6	91	85.50	-1.79	0.74	0.797119
6001	dm3.chr3L	2,986,919 – 2,986,981	- - - - - - - -	8257	2,986,919 – 2,986,981	-	4	62	94.35	-1.75	0.92	0.860620
6002	dm3.chr3L	2,991,619 – 2,991,743	- - - - - - - -	8258	2,991,619 – 2,991,712	+	5	93	93.05	-1.33	0.92	0.670513
				8259	2,991,619 – 2,991,712	-	5	93	93.05	-2.23	0.86	0.922367
				8260	2,991,650 – 2,991,743	+	7	101	64.83	-1.62	0.47	0.977301
				8261	2,991,650 – 2,991,743	-	7	101	64.83	-1.54	0.60	0.994817
6003	dm3.chr3L	3,005,507 – 3,005,635	- - - intron="intron;ID=intron_CG2114:1_CG2114:2;Name=FR-in;Parent=FBtr0072980;parent_type=mRNA" - - - -	8262	3,005,507 – 3,005,612	+	7	117	67.62	-2.11	0.54	0.996984
6003	dm3.chr3L	3,005,507 – 3,005,635		8263	3,005,536 – 3,005,635	+	6	99	79.39	-1.60	0.70	0.903665
6004	dm3.chr3L	3,006,639 – 3,006,729	- - - intron="intron;ID=intron_CG2114:1_CG2114:2;Name=FR-in;Parent=FBtr0072980;parent_type=mRNA" - - - -	8264	3,006,639 – 3,006,729	-	7	98	66.67	-1.89	0.35	0.899081
6005	dm3.chr3L	3,014,525 – 3,014,641	- - - - - - - -	8265	3,014,525 – 3,014,625	-	5	100	79.64	-2.76	0.73	0.995843
6005	dm3.chr3L	3,014,525 – 3,014,641	- - - - - - - -	8266	3,014,543 – 3,014,641	-	5	100	71.59	-1.33	0.52	0.705978
6006	dm3.chr3L	3,035,330 – 3,035,423	- - - - - - - -	8267	3,035,330 – 3,035,423	+	7	94	73.73	-1.11	0.55	0.515693
6007	dm3.chr3L	3,060,561 – 3,060,709	- - - intron="intron;ID=intron_CG32486:1_CG32486:2;Name=CG32486-in;Parent=FBtr0073004;parent_type=mRNA" - - - -	8268	3,060,561 – 3,060,709	+	5	148	97.57	-3.13	0.97	0.995904
6007	dm3.chr3L	3,060,561 – 3,060,709		8269	3,060,561 – 3,060,709	-	5	148	97.57	-1.57	0.90	0.580248
6008	dm3.chr3L	3,070,301 – 3,070,397	- - CDS="CDS;ID=CDS_CG32486:1_305;Name=CG32486-cds;Parent=FBtr0073004;parent_type=mRNA" - - - - -	8270	3,070,301 – 3,070,397	+	11	102	65.71	-1.18	0.54	0.967518
6009	dm3.chr3L	3,075,359 – 3,075,468	- - - intron="intron;ID=intron_FBgn0035397:8_FBgn0035397:11;Name=CG11486-in;Parent=FBtr0072991;parent_type=mRNA" - - - -	8271	3,075,359 – 3,075,468	+	4	119	73.17	-1.40	0.60	0.699311
6010	dm3.chr3L	3,076,842 – 3,076,936	- - - intron="intron;ID=intron_FBgn0035397:8_FBgn0035397:11;Name=CG11486-in;Parent=FBtr0072991;parent_type=mRNA" - - - -	8272	3,076,842 – 3,076,936	-	6	105	69.26	-1.38	0.53	0.902789
6011	dm3.chr3L	3,081,114 – 3,081,267	- - - intron="intron;ID=intron_FBgn0035397:11_FBgn0035397:14;Name=CG11486-in;Parent=FBtr0072991;parent_type=mRNA" - - - -	8273	3,081,114 – 3,081,267	+	6	160	90.73	-1.74	0.85	0.798702
6012	dm3.chr3L	3,081,751 – 3,081,846	- - - intron="intron;ID=intron_FBgn0035397:12_FBgn0035397:14;Name=CG11486-in;Parent=FBtr0072995;parent_type=mRNA" - - - -	8274	3,081,751 – 3,081,846	-	11	118	63.52	-2.23	0.27	0.930770
6013	dm3.chr3L	3,083,198 – 3,083,342	- - - intron="intron;ID=intron_FBgn0035397:13_FBgn0035397:14;Name=CG11486-in;Parent=FBtr0072996;parent_type=mRNA" - - - -	8275	3,083,198 – 3,083,342	-	6	152	70.37	-1.65	0.38	0.603806
6014	dm3.chr3L	3,083,426 – 3,083,521	- - - intron="intron;ID=intron_FBgn0035397:13_FBgn0035397:14;Name=CG11486-in;Parent=FBtr0072996;parent_type=mRNA" - - - -	8276	3,083,426 – 3,083,521	-	7	107	74.36	-2.58	0.40	0.942838
6015	dm3.chr3L	3,083,837 – 3,083,902	- - - intron="intron;ID=intron_FBgn0035397:14_FBgn0035397:15;Name=CG11486-in;Parent=FBtr0072998,FBtr0073000,FBtr0073001,FBtr0073002,FBtr0073003,FBtr0072991,FBtr0072992,FBtr0072994,FBtr0113131;parent_type=mRNA" - - - -	8277	3,083,837 – 3,083,902	-	7	71	56.19	-1.59	0.50	0.998804
6016	dm3.chr3L	3,085,519 – 3,085,617	- - CDS="CDS;ID=CDS_FBgn0035397:16_370;Name=CG11486-cds;Parent=FBtr0113129,FBtr0113130,FBtr0113131;parent_type=mRNA" - - - - -	8278	3,085,519 – 3,085,617	+	5	98	98.57	-1.11	1.00	0.746643
6016	dm3.chr3L	3,085,519 – 3,085,617		8279	3,085,519 – 3,085,617	-	5	98	98.57	-3.02	1.00	0.996308
6017	dm3.chr3L	3,087,031 – 3,087,122	- - - intron="intron;ID=intron_FBgn0035397:19_FBgn0035397:20;Name=CG11486-in;Parent=FBtr0072995,FBtr0072996,FBtr0072998,FBtr0072999,FBtr0073000,FBtr0073001,FBtr0073002,FBtr0073003,FBtr0072991,FBtr0072992,FBtr0072993,FBtr0072994,FBtr0113129,FBtr0113130,FBtr0113131;parent_type=mRNA" - - - -	8280	3,087,031 – 3,087,122	-	11	92	65.93	-0.94	0.46	0.913805
6018	dm3.chr3L	3,095,717 – 3,095,869	FBnoncoding="tRNA;ID=FBtr0073018;Name=tRNA:CR32288-RA;Parent=FBgn0052288;Alias=CR32288-RA;Dbxref=FlyBase_Annotation_IDs:CR32288-RA;score_text=Weakly" tRNAscann="Cys_chr3L_trna14" - intron="intron;ID=intron_FBgn0035398:7_FBgn0035398:6;Name=Cht7-in;Parent=FBtr0073124;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010216966.1/262-333\|2.7e-27" - - -	8281	3,095,717 – 3,095,869	+	11	156	74.11	-1.28	0.69	0.975786
6018	dm3.chr3L	3,095,717 – 3,095,869		8282	3,095,717 – 3,095,869	-	11	156	74.11	-1.32	0.68	0.977201
6019	dm3.chr3L	3,095,985 – 3,096,062	FBnoncoding="tRNA;ID=FBtr0073019;Name=tRNA:CR32289-RA;Parent=FBgn0052289;Alias=CR32289-RA;Dbxref=FlyBase_Annotation_IDs:CR32289-RA;score_text=Weakly" tRNAscann="Cys_chr3L_trna15" - intron="intron;ID=intron_FBgn0035398:7_FBgn0035398:6;Name=Cht7-in;Parent=FBtr0073124;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010216966.1/262-333\|1.2e-27" - - -	8283	3,095,985 – 3,096,062	+	13	78	93.82	-1.83	1.02	0.984828
6019	dm3.chr3L	3,095,985 – 3,096,062		8284	3,095,985 – 3,096,062	-	13	78	93.82	-2.19	1.01	0.992154
6020	dm3.chr3L	3,097,508 – 3,097,598	FBnoncoding="tRNA;ID=FBtr0073022;Name=tRNA:CR32286-RA;Parent=FBgn0052286;Alias=CR32286-RA;Dbxref=FlyBase_Annotation_IDs:CR32286-RA;score_text=Weakly" tRNAscann="Cys_chr3L_trna18" - intron="intron;ID=intron_FBgn0035398:7_FBgn0035398:6;Name=Cht7-in;Parent=FBtr0073124;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010216966.1/262-333\|1.5e-27" - - -	8285	3,097,508 – 3,097,598	+	11	101	83.95	-2.19	0.97	0.993441
6020	dm3.chr3L	3,097,508 – 3,097,598		8286	3,097,508 – 3,097,598	-	11	101	83.95	-2.49	0.98	0.996230
6021	dm3.chr3L	3,101,270 – 3,101,364	- - - intron="intron;ID=intron_FBgn0035398:8_FBgn0035398:7;Name=Cht7-in;Parent=FBtr0073124;parent_type=mRNA" - - - -	8287	3,101,270 – 3,101,364	+	6	94	69.72	-0.61	0.57	0.534021
6022	dm3.chr3L	3,114,584 – 3,114,651	- - - - - - - -	8288	3,114,584 – 3,114,651	-	8	73	83.32	-1.43	0.69	0.500000
6023	dm3.chr3L	3,122,693 – 3,122,783	- - - intron="intron;ID=intron_FBgn0026189:16_FBgn0026189:14;Name=prominin-like-in;Parent=FBtr0073120;parent_type=mRNA" - - - -	8289	3,122,693 – 3,122,783	-	6	95	71.54	-2.04	0.47	0.959528
6024	dm3.chr3L	3,134,237 – 3,134,357	- - - intron="intron;ID=intron_FBgn0035400:17_FBgn0035400:14;Name=CG11537-in;Parent=FBtr0073116;parent_type=mRNA" - - - -	8290	3,134,237 – 3,134,357	+	6	121	73.17	-1.46	0.65	0.953866
6025	dm3.chr3L	3,135,767 – 3,135,905	- - - intron="intron;ID=intron_FBgn0035400:17_FBgn0035400:14;Name=CG11537-in;Parent=FBtr0073116;parent_type=mRNA" - - - -	8291	3,135,767 – 3,135,870	+	5	113	86.03	-1.78	0.75	0.671870
6025	dm3.chr3L	3,135,767 – 3,135,905		8292	3,135,792 – 3,135,905	+	5	115	88.09	-1.59	0.79	0.566271
6026	dm3.chr3L	3,138,045 – 3,138,153	- - - intron="intron;ID=intron_FBgn0035400:17_FBgn0035400:14;Name=CG11537-in;Parent=FBtr0073116;parent_type=mRNA" - - - -	8293	3,138,045 – 3,138,153	-	4	116	74.28	-1.52	0.65	0.848880
6027	dm3.chr3L	3,139,427 – 3,139,527	- - - intron="intron;ID=intron_FBgn0035400:17_FBgn0035400:14;Name=CG11537-in;Parent=FBtr0073116;parent_type=mRNA" - - - -	8294	3,139,427 – 3,139,527	-	6	117	67.26	-0.91	0.57	0.717975
6028	dm3.chr3L	3,141,726 – 3,141,830	- - - - - - - -	8295	3,141,726 – 3,141,830	+	5	105	94.92	-1.33	0.93	0.656545
6028	dm3.chr3L	3,141,726 – 3,141,830	- - - - - - - -	8296	3,141,726 – 3,141,830	-	5	105	94.92	-1.46	0.90	0.607761
6029	dm3.chr3L	3,152,370 – 3,152,426	- - - intron="intron;ID=intron_FBgn0012049:7_FBgn0012049:9;Name=BtbVII-in;Parent=FBtr0073024,FBtr0073025;parent_type=mRNA" - - - -	8297	3,152,370 – 3,152,426	-	3	56	100.00	-1.19	1.00	0.757598
6030	dm3.chr3L	3,159,477 – 3,159,605	- - - - - - - -	8298	3,159,477 – 3,159,605	-	10	155	61.88	-2.29	0.22	0.843088
6031	dm3.chr3L	3,166,693 – 3,166,809	- - - - - - - -	8299	3,166,693 – 3,166,809	-	6	120	82.61	-2.06	0.65	0.878578
6032	dm3.chr3L	3,166,907 – 3,167,244	- - - - - - - -	8300	3,166,907 – 3,167,002	-	6	103	83.10	-2.22	0.74	0.966053
				8301	3,166,931 – 3,167,027	-	6	100	79.57	-1.18	0.68	0.559597
				8302	3,167,027 – 3,167,142	-	7	118	69.92	-1.81	0.31	0.524826
				8303	3,167,067 – 3,167,182	+	6	118	76.49	-1.81	0.58	0.908526
				8304	3,167,104 – 3,167,209	+	6	105	75.16	-2.15	0.60	0.985682
				8305	3,167,104 – 3,167,209	-	6	105	75.16	-1.78	0.59	0.943871
				8306	3,167,142 – 3,167,244	+	5	103	95.87	-1.87	0.96	0.938947
				8307	3,167,142 – 3,167,244	-	5	103	95.87	-1.49	0.98	0.891061
6033	dm3.chr3L	3,176,857 – 3,176,947	- - - intron="intron;ID=intron_CG14964:2_CG14964:3;Name=CG14964-in;Parent=FBtr0073110;parent_type=mRNA" - - - -	8308	3,176,857 – 3,176,947	-	8	97	66.93	-0.62	0.65	0.910054
6034	dm3.chr3L	3,197,383 – 3,197,476	- - CDS="CDS;ID=CDS_FBgn0035415:1_480;Name=CG14966-cds;Parent=FBtr0073108;parent_type=mRNA" - - - - -	8309	3,197,383 – 3,197,476	-	6	99	76.98	-1.87	0.57	0.876541
6035	dm3.chr3L	3,199,150 – 3,199,269	- - - intron="intron;ID=intron_CG17569:1_CG17569:11;Name=gry-in;Parent=FBtr0073042;parent_type=mRNA" - - - -	8310	3,199,150 – 3,199,262	+	6	112	63.73	-1.09	0.40	0.762115
6035	dm3.chr3L	3,199,150 – 3,199,269		8311	3,199,175 – 3,199,269	+	5	94	66.35	-1.28	0.45	0.797525
6036	dm3.chr3L	3,228,939 – 3,229,042	- - CDS="CDS;ID=CDS_CG11505:5_322;Name=CG11505-cds;Parent=FBtr0073047;parent_type=mRNA" - - - - -	8312	3,228,939 – 3,229,042	+	8	106	77.60	-1.41	0.54	0.575290
6037	dm3.chr3L	3,251,024 – 3,251,104	FBnoncoding="pre_miRNA;ID=FBtr0304174;Name=mir-282-RM;Parent=FBgn0262368;Alias=CR42880-RM;Dbxref=FlyBase_Annotation_IDs:CR42880-RM,miRBase:MI0000367" - - - "Rfam_10.0=RF00724;mir-282;AE014296.4/3251022-3251116\|5.8e-39" - - "mirBase_v16=dme-mir-282\|1.1e-40"	8313	3,251,024 – 3,251,104	+	13	82	88.54	-6.36	0.94	0.995982
6037	dm3.chr3L	3,251,024 – 3,251,104		8314	3,251,024 – 3,251,104	-	13	82	88.54	-4.58	0.91	0.999242
6038	dm3.chr3L	3,252,167 – 3,252,282	- - - - - - - -	8315	3,252,167 – 3,252,278	+	5	116	78.13	-1.73	0.70	0.909141
6038	dm3.chr3L	3,252,167 – 3,252,282	- - - - - - - -	8316	3,252,171 – 3,252,282	+	5	116	78.39	-1.60	0.67	0.810762
6039	dm3.chr3L	3,252,509 – 3,252,613	- - - - - - - -	8317	3,252,509 – 3,252,613	+	7	111	63.47	-0.68	0.43	0.500000
6040	dm3.chr3L	3,263,988 – 3,264,056	- - - intron="intron;ID=intron_FBgn0035427:1_FBgn0035427:2;Name=ckd-in;Parent=FBtr0073050;parent_type=mRNA" - - - -	8318	3,263,988 – 3,264,056	+	11	71	79.57	-0.86	0.70	0.656643
6041	dm3.chr3L	3,264,360 – 3,264,424	- - - intron="intron;ID=intron_FBgn0035427:1_FBgn0035427:2;Name=ckd-in;Parent=FBtr0073050;parent_type=mRNA" - - - -	8319	3,264,360 – 3,264,424	+	3	64	77.17	-1.22	0.79	0.562829
6042	dm3.chr3L	3,266,853 – 3,266,955	- - - intron="intron;ID=intron_FBgn0035427:2_FBgn0035427:3;Name=ckd-in;Parent=FBtr0073050;parent_type=mRNA" - - - -	8320	3,266,853 – 3,266,955	+	7	104	73.76	-2.01	0.57	0.977265
6042	dm3.chr3L	3,266,853 – 3,266,955		8321	3,266,853 – 3,266,955	-	7	104	73.76	-1.39	0.58	0.842126
6043	dm3.chr3L	3,286,715 – 3,286,858	- - - intron="intron;ID=intron_CG12017:2_CG12017:3;Name=CG12017-in;Parent=FBtr0073052;parent_type=mRNA" - - - -	8322	3,286,715 – 3,286,821	-	7	116	69.41	-1.98	0.36	0.848315
6043	dm3.chr3L	3,286,715 – 3,286,858		8323	3,286,751 – 3,286,858	-	6	107	77.16	-2.18	0.39	0.505037
6044	dm3.chr3L	3,287,551 – 3,287,707	- - - intron="intron;ID=intron_CG12017:4_CG12017:5;Name=CG12017-in;Parent=FBtr0073052;parent_type=mRNA" - - - -	8324	3,287,551 – 3,287,707	+	6	158	70.77	-1.12	0.52	0.731160
6045	dm3.chr3L	3,293,813 – 3,293,907	- - - - - - - -	8325	3,293,813 – 3,293,907	+	6	100	81.31	-1.07	0.92	0.876520
6046	dm3.chr3L	3,297,907 – 3,298,002	- - CDS="CDS;ID=CDS_CG12009:3_290;Name=CG12009-cds;Parent=FBtr0073053;parent_type=mRNA" - - - - -	8326	3,297,907 – 3,298,002	+	7	98	71.29	-1.10	0.49	0.635606
6047	dm3.chr3L	3,303,964 – 3,304,021	- - - intron="intron;ID=intron_CG17723:1_CG17723:8;Name=ZnT63C-in;Parent=FBtr0073055;parent_type=mRNA" - - - -	8327	3,303,964 – 3,304,021	-	7	57	79.62	-2.05	0.60	0.945409
6048	dm3.chr3L	3,311,273 – 3,311,372	- - - intron="intron;ID=intron_CG17723:3_CG17723:4;Name=ZnT63C-in;Parent=FBtr0073054,FBtr0073055,FBtr0073056,FBtr0073057,FBtr0073058;parent_type=mRNA" - - - -	8328	3,311,273 – 3,311,372	-	8	100	56.70	-1.09	0.29	0.534003
6049	dm3.chr3L	3,315,831 – 3,315,898	- - - - - - - -	8329	3,315,831 – 3,315,898	-	5	84	71.27	-1.66	0.47	0.738804
6050	dm3.chr3L	3,317,630 – 3,317,739	- - - - - - - -	8330	3,317,630 – 3,317,739	-	4	113	92.64	-2.15	0.92	0.958919
6051	dm3.chr3L	3,326,156 – 3,326,246	- - - intron="intron;ID=intron_FBgn0035437:5_FBgn0035437:4;Name=CG11526-in;Parent=FBtr0073083;parent_type=mRNA" - - - -	8331	3,326,156 – 3,326,246	-	6	104	65.64	-0.57	0.51	0.544872
6052	dm3.chr3L	3,327,709 – 3,327,824	- - - intron="intron;ID=intron_FBgn0035438:3_FBgn0035438:4;Name=PHGPx-in;Parent=FBtr0073068;parent_type=mRNA" - - - -	8332	3,327,709 – 3,327,824	+	3	115	94.78	-3.38	0.90	0.995083
6052	dm3.chr3L	3,327,709 – 3,327,824		8333	3,327,709 – 3,327,824	-	3	115	94.78	-2.71	0.95	0.990618
6053	dm3.chr3L	3,329,904 – 3,329,999	- - - - - - - -	8334	3,329,904 – 3,329,999	+	6	96	82.71	-2.41	0.65	0.957718
6054	dm3.chr3L	3,345,520 – 3,345,648	- - - intron="intron;ID=intron_FBgn0004167:3_FBgn0004167:5;Name=kst-in;Parent=FBtr0303857;parent_type=mRNA" - - - -	8335	3,345,520 – 3,345,648	+	6	135	71.90	-1.62	0.52	0.890976
6055	dm3.chr3L	3,370,637 – 3,370,732	- - - - - - - -	8336	3,370,637 – 3,370,732	+	6	101	81.11	-1.61	0.66	0.661892
6056	dm3.chr3L	3,370,949 – 3,371,017	- - - - - - - -	8337	3,370,949 – 3,371,017	+	7	76	69.18	-1.52	0.54	0.924049
6056	dm3.chr3L	3,370,949 – 3,371,017	- - - - - - - -	8338	3,370,949 – 3,371,017	-	7	76	69.18	-1.38	0.49	0.759697
6057	dm3.chr3L	3,373,684 – 3,373,777	- - CDS="CDS;ID=CDS_CG12076:2_291;Name=YT521-B-cds;Parent=FBtr0073079;parent_type=mRNA" - - - - -	8339	3,373,684 – 3,373,777	+	13	108	71.76	-1.24	0.42	0.510303
6058	dm3.chr3L	3,380,350 – 3,380,442	- - - - - - - -	8340	3,380,350 – 3,380,442	+	8	98	73.85	-3.08	0.48	0.998029
6058	dm3.chr3L	3,380,350 – 3,380,442	- - - - - - - -	8341	3,380,350 – 3,380,442	-	8	98	73.85	-2.12	0.43	0.906873
6059	dm3.chr3L	3,395,979 – 3,396,090	- - - - - - - -	8342	3,395,979 – 3,396,090	+	6	112	78.99	-1.87	0.56	0.722384
6060	dm3.chr3L	3,399,244 – 3,399,350	- - - - - - - -	8343	3,399,244 – 3,399,350	-	5	111	79.74	-1.53	0.72	0.784393
6061	dm3.chr3L	3,399,781 – 3,399,928	- - - - - - - -	8344	3,399,781 – 3,399,879	+	6	105	74.08	-1.54	0.66	0.907489
				8345	3,399,781 – 3,399,879	-	6	105	74.08	-1.22	0.68	0.792927
				8346	3,399,837 – 3,399,928	-	3	94	73.36	-1.39	0.64	0.516980
6062	dm3.chr3L	3,404,373 – 3,404,470	- - CDS="CDS;ID=CDS_CG1921:4_307;Name=sty-cds;Parent=FBtr0073146;parent_type=mRNA" - - - - -	8347	3,404,373 – 3,404,470	+	9	113	68.41	-1.72	0.44	0.938912
6063	dm3.chr3L	3,410,698 – 3,410,797	- - - intron="intron;ID=intron_CG1921:3_CG1921:4;Name=sty-in;Parent=FBtr0073146;parent_type=mRNA" - - - -	8348	3,410,698 – 3,410,797	-	3	103	73.11	-2.23	0.47	0.685123
6064	dm3.chr3L	3,420,738 – 3,420,829	- - - - - - - -	8349	3,420,738 – 3,420,829	-	7	96	75.93	-1.23	0.58	0.556099
6065	dm3.chr3L	3,421,432 – 3,421,527	- - - - - - - -	8350	3,421,432 – 3,421,527	+	6	95	87.23	-2.85	0.73	0.984557
6065	dm3.chr3L	3,421,432 – 3,421,527	- - - - - - - -	8351	3,421,432 – 3,421,527	-	6	95	87.23	-2.10	0.70	0.800715
6066	dm3.chr3L	3,430,696 – 3,430,795	- - - intron="intron;ID=intron_CG10840:8_CG10840:9;Name=eIF5B-in;Parent=FBtr0073144;parent_type=mRNA" - - - -	8352	3,430,696 – 3,430,795	+	5	117	64.95	-1.41	0.44	0.757755
6067	dm3.chr3L	3,431,572 – 3,431,663	- - - intron="intron;ID=intron_CG10840:8_CG10840:9;Name=eIF5B-in;Parent=FBtr0073144;parent_type=mRNA" - - - -	8353	3,431,572 – 3,431,663	-	5	94	59.16	-0.65	0.43	0.617690
6068	dm3.chr3L	3,440,213 – 3,440,263	- - - intron="intron;ID=intron_CG10840:7_CG10840:8;Name=eIF5B-in;Parent=FBtr0073144;parent_type=mRNA" - - - -	8354	3,440,213 – 3,440,263	+	5	50	90.00	-0.79	0.96	0.539472
6069	dm3.chr3L	3,440,527 – 3,440,608	- - - intron="intron;ID=intron_CG10840:7_CG10840:8;Name=eIF5B-in;Parent=FBtr0073144;parent_type=mRNA" - - - -	8355	3,440,527 – 3,440,608	-	10	97	76.24	-1.57	0.55	0.727304
6070	dm3.chr3L	3,440,845 – 3,441,024	- - - intron="intron;ID=intron_CG10840:7_CG10840:8;Name=eIF5B-in;Parent=FBtr0073144;parent_type=mRNA" - - - -	8356	3,440,845 – 3,440,953	-	5	120	92.73	-1.16	0.92	0.540144
6070	dm3.chr3L	3,440,845 – 3,441,024		8357	3,440,915 – 3,441,024	-	6	115	81.00	-1.99	0.53	0.612814
6071	dm3.chr3L	3,451,026 – 3,451,138	- - - intron="intron;ID=intron_CG10840:4_CG10840:5;Name=eIF5B-in;Parent=FBtr0073144;parent_type=mRNA" - - - -	8358	3,451,026 – 3,451,138	+	5	112	81.01	-1.66	0.75	0.827347
6072	dm3.chr3L	3,452,746 – 3,452,854	- - - intron="intron;ID=intron_CG10840:4_CG10840:5;Name=eIF5B-in;Parent=FBtr0073144;parent_type=mRNA" - - - -	8359	3,452,746 – 3,452,854	+	5	117	65.42	-2.63	0.29	0.946029
6072	dm3.chr3L	3,452,746 – 3,452,854		8360	3,452,746 – 3,452,854	-	5	117	65.42	-2.55	0.25	0.838913
6073	dm3.chr3L	3,463,912 – 3,464,009	- - - intron="intron;ID=intron_CG11513:6_CG11513:7;Name=armi-in;Parent=FBtr0073126,FBtr0100641;parent_type=mRNA" - - - -	8361	3,463,912 – 3,464,009	+	5	105	64.82	-0.70	0.66	0.936471
6073	dm3.chr3L	3,463,912 – 3,464,009		8362	3,463,912 – 3,464,009	-	5	105	64.82	-1.00	0.47	0.758178
6074	dm3.chr3L	3,467,769 – 3,467,874	- - - - - - - -	8363	3,467,769 – 3,467,874	+	6	117	69.69	-1.59	0.44	0.781149
6075	dm3.chr3L	3,467,971 – 3,468,031	- - - - - - - -	8364	3,467,971 – 3,468,031	-	6	71	75.08	-1.01	0.77	0.771550
6076	dm3.chr3L	3,472,999 – 3,473,093	- - - - - - - -	8365	3,472,999 – 3,473,093	-	5	104	71.30	-1.44	0.59	0.902888
6077	dm3.chr3L	3,474,987 – 3,475,080	- - - - - - - -	8366	3,474,987 – 3,475,080	-	8	107	69.99	-2.41	0.30	0.830871
6078	dm3.chr3L	3,480,166 – 3,480,228	- - - - - - - -	8367	3,480,166 – 3,480,228	-	5	62	92.42	-1.82	0.93	0.930301
6079	dm3.chr3L	3,490,025 – 3,490,076	- - - intron="intron;ID=intron_FBgn0259224:2_FBgn0259224:3;Name=CG42324-in;Parent=FBtr0299777,FBtr0299778;parent_type=mRNA" - - - -	8368	3,490,025 – 3,490,076	+	9	55	81.37	-1.63	0.65	0.785798
6080	dm3.chr3L	3,500,823 – 3,500,939	- - - intron="intron;ID=intron_FBgn0259224:2_FBgn0259224:3;Name=CG42324-in;Parent=FBtr0299777,FBtr0299778;parent_type=mRNA" - - - -	8369	3,500,823 – 3,500,939	-	6	119	71.00	-1.17	0.47	0.558980
6081	dm3.chr3L	3,504,048 – 3,504,152	- - - intron="intron;ID=intron_FBgn0259224:2_FBgn0259224:3;Name=CG42324-in;Parent=FBtr0299777,FBtr0299778;parent_type=mRNA" - - - -	8370	3,504,048 – 3,504,152	-	3	118	66.47	-1.52	0.50	0.500000
6082	dm3.chr3L	3,510,043 – 3,510,134	- - - - - - - -	8371	3,510,043 – 3,510,134	-	6	96	73.07	-1.25	0.54	0.715620
6083	dm3.chr3L	3,514,008 – 3,514,062	- - - - - - - -	8372	3,514,008 – 3,514,062	+	6	54	91.73	-1.59	0.89	0.795262
6084	dm3.chr3L	3,522,822 – 3,522,892	- - - intron="intron;ID=intron_FBgn0005640:3_FBgn0005640:11;Name=Eip63E-in;Parent=FBtr0073132,FBtr0302598;parent_type=mRNA" - - - -	8373	3,522,822 – 3,522,892	+	7	72	93.37	-2.10	0.94	0.969157
6085	dm3.chr3L	3,529,240 – 3,529,318	- - - intron="intron;ID=intron_FBgn0005640:3_FBgn0005640:11;Name=Eip63E-in;Parent=FBtr0073132,FBtr0302598;parent_type=mRNA" - - - -	8374	3,529,240 – 3,529,318	+	5	78	97.18	-1.65	0.99	0.932877
6085	dm3.chr3L	3,529,240 – 3,529,318		8375	3,529,240 – 3,529,318	-	5	78	97.18	-2.38	0.99	0.988275
6086	dm3.chr3L	3,529,519 – 3,529,609	- - - intron="intron;ID=intron_FBgn0005640:3_FBgn0005640:11;Name=Eip63E-in;Parent=FBtr0073132,FBtr0302598;parent_type=mRNA" - - - -	8376	3,529,519 – 3,529,609	+	6	105	71.70	-1.42	0.45	0.664563
6087	dm3.chr3L	3,532,320 – 3,532,370	- - - intron="intron;ID=intron_FBgn0005640:3_FBgn0005640:11;Name=Eip63E-in;Parent=FBtr0073132,FBtr0302598;parent_type=mRNA" - - - -	8377	3,532,320 – 3,532,370	-	3	58	59.64	-1.83	0.55	0.972145
6088	dm3.chr3L	3,538,170 – 3,538,234	- - - intron="intron;ID=intron_FBgn0005640:3_FBgn0005640:11;Name=Eip63E-in;Parent=FBtr0073132,FBtr0302598;parent_type=mRNA" - - - -	8378	3,538,170 – 3,538,234	+	5	64	90.58	-2.72	0.76	0.950420
6089	dm3.chr3L	3,539,165 – 3,539,233	- - - intron="intron;ID=intron_FBgn0005640:3_FBgn0005640:11;Name=Eip63E-in;Parent=FBtr0073132,FBtr0302598;parent_type=mRNA" - - - -	8379	3,539,165 – 3,539,233	-	7	78	67.36	-1.32	0.54	0.947043
6090	dm3.chr3L	3,545,082 – 3,545,176	- - - intron="intron;ID=intron_FBgn0005640:5_FBgn0005640:10;Name=Eip63E-in;Parent=FBtr0110923,FBtr0073133;parent_type=mRNA" - - - -	8380	3,545,082 – 3,545,176	+	5	103	86.16	-1.69	0.73	0.527558
6091	dm3.chr3L	3,554,154 – 3,554,259	- - - intron="intron;ID=intron_FBgn0005640:11_FBgn0005640:12;Name=Eip63E-in;Parent=FBtr0110920,FBtr0110921,FBtr0110922,FBtr0110923,FBtr0110924,FBtr0110925,FBtr0073131,FBtr0073132,FBtr0073133,FBtr0073134,FBtr0073135,FBtr0302598,FBtr0301948;parent_type=mRNA" - - - -	8381	3,554,154 – 3,554,250	-	7	98	68.62	-2.20	0.36	0.961034
6091	dm3.chr3L	3,554,154 – 3,554,259		8382	3,554,165 – 3,554,259	-	6	96	75.35	-2.20	0.51	0.958893
6092	dm3.chr3L	3,607,175 – 3,607,264	- - - intron="intron;ID=intron_FBgn0005640:19_FBgn0005640:21;Name=Eip63E-in;Parent=FBtr0110924,FBtr0302598;parent_type=mRNA" - - - -	8383	3,607,175 – 3,607,264	+	5	93	77.02	-1.72	0.56	0.727548
6092	dm3.chr3L	3,607,175 – 3,607,264		8384	3,607,175 – 3,607,264	-	5	93	77.02	-1.33	0.63	0.614024
6093	dm3.chr3L	3,648,695 – 3,648,802	- - - intron="intron;ID=intron_FBgn0035454:4_FBgn0035454:5;Name=CG12029-in;Parent=FBtr0113134;parent_type=mRNA" - - - -	8385	3,648,695 – 3,648,802	-	5	108	95.16	-2.05	0.88	0.871076
6094	dm3.chr3L	3,664,641 – 3,664,739	- - - - - - - -	8386	3,664,641 – 3,664,739	-	4	102	68.53	-1.17	0.62	0.754007
6095	dm3.chr3L	3,664,780 – 3,664,847	- - - - - - - -	8387	3,664,780 – 3,664,847	+	6	74	69.90	-1.99	0.43	0.932298
6096	dm3.chr3L	3,667,220 – 3,667,316	- - - - - - - -	8388	3,667,220 – 3,667,316	+	9	99	81.16	-1.16	0.68	0.550205
6097	dm3.chr3L	3,676,565 – 3,676,684	- - - - - - - -	8389	3,676,565 – 3,676,684	-	5	120	78.92	-1.37	0.64	0.517404
6098	dm3.chr3L	3,678,232 – 3,678,325	- - - - - - - -	8390	3,678,232 – 3,678,325	-	5	93	93.76	-1.18	0.97	0.770859
6099	dm3.chr3L	3,678,963 – 3,679,078	- - - - - - - -	8391	3,678,963 – 3,679,054	+	11	122	86.91	-2.45	0.74	0.947597
6099	dm3.chr3L	3,678,963 – 3,679,078	- - - - - - - -	8392	3,678,979 – 3,679,078	+	12	120	90.21	-2.10	0.88	0.952778
6100	dm3.chr3L	3,701,198 – 3,701,254	- - - - - - - -	8393	3,701,198 – 3,701,254	+	6	57	79.86	-2.43	0.47	0.865952
6101	dm3.chr3L	3,702,629 – 3,702,730	- - - - - - - -	8394	3,702,629 – 3,702,730	+	12	119	76.64	-1.05	0.59	0.515031
6102	dm3.chr3L	3,710,474 – 3,710,566	- - - - - - - -	8395	3,710,474 – 3,710,566	+	6	97	86.41	-1.79	0.72	0.655407
6103	dm3.chr3L	3,711,114 – 3,711,212	- - - - - - - -	8396	3,711,114 – 3,711,212	+	7	108	72.11	-0.95	0.58	0.640095
6104	dm3.chr3L	3,718,520 – 3,718,631	- - - intron="intron;ID=intron_FBgn0052264:3_FBgn0052264:2;Name=CG32264-in;Parent=FBtr0073187,FBtr0073188,FBtr0073186,FBtr0113430,FBtr0303097,FBtr0303098;parent_type=mRNA" - - - -	8397	3,718,520 – 3,718,631	+	5	123	64.81	-3.42	0.28	0.994587
6104	dm3.chr3L	3,718,520 – 3,718,631		8398	3,718,520 – 3,718,631	-	5	123	64.81	-3.96	0.25	0.997701
6105	dm3.chr3L	3,722,117 – 3,722,261	- - CDS="CDS;ID=CDS_FBgn0052264:5_442;Name=CG32264-cds;Parent=FBtr0073187,FBtr0073188,FBtr0073186,FBtr0113430;parent_type=mRNA" - - - - -	8399	3,722,117 – 3,722,261	+	8	165	69.37	-1.30	0.47	0.811604
6106	dm3.chr3L	3,725,048 – 3,725,098	- - - intron="intron;ID=intron_FBgn0052264:8_FBgn0052264:7;Name=CG32264-in;Parent=FBtr0073188;parent_type=mRNA" - - - -	8400	3,725,048 – 3,725,098	+	8	60	76.69	-1.78	0.80	0.979414
6107	dm3.chr3L	3,733,520 – 3,733,613	- - - intron="intron;ID=intron_FBgn0052264:8_FBgn0052264:7;Name=CG32264-in;Parent=FBtr0073188;parent_type=mRNA" - - - -	8401	3,733,520 – 3,733,613	+	7	117	66.48	-2.15	0.42	0.977314
6108	dm3.chr3L	3,758,465 – 3,758,556	- - - - - - - -	8402	3,758,465 – 3,758,556	-	4	92	93.04	-3.34	0.58	0.877626
6109	dm3.chr3L	3,769,680 – 3,769,781	- - - intron="intron;ID=intron_FBgn0052264:14_FBgn0052264:13;Name=CG32264-in;Parent=FBtr0073187,FBtr0113430;parent_type=mRNA" - - - -	8403	3,769,680 – 3,769,781	+	6	106	72.86	-1.53	0.47	0.685544
6110	dm3.chr3L	3,771,019 – 3,771,132	- - - intron="intron;ID=intron_FBgn0052264:14_FBgn0052264:13;Name=CG32264-in;Parent=FBtr0073187,FBtr0113430;parent_type=mRNA" - - - -	8404	3,771,019 – 3,771,132	+	5	120	85.38	-2.00	0.67	0.662599
6111	dm3.chr3L	3,780,858 – 3,780,957	- - CDS="CDS;ID=CDS_FBgn0052264:14_442;Name=CG32264-cds;Parent=FBtr0073187,FBtr0113430;parent_type=mRNA" - - - - -	8405	3,780,858 – 3,780,957	+	10	108	75.32	-1.98	0.38	0.681363
6112	dm3.chr3L	3,787,983 – 3,788,105	- - - - - - - -	8406	3,787,983 – 3,788,090	+	6	115	75.33	-1.61	0.62	0.907881
				8407	3,787,992 – 3,788,105	+	5	113	86.98	-2.88	0.72	0.977830
				8408	3,787,992 – 3,788,105	-	5	113	86.98	-2.18	0.76	0.889966
6113	dm3.chr3L	3,798,000 – 3,798,065	- - - - - - - -	8409	3,798,000 – 3,798,065	+	11	70	70.18	-1.94	0.41	0.949554
6113	dm3.chr3L	3,798,000 – 3,798,065	- - - - - - - -	8410	3,798,000 – 3,798,065	-	11	70	70.18	-2.23	0.33	0.911356
6114	dm3.chr3L	3,800,685 – 3,800,834	- - - - - - - -	8411	3,800,685 – 3,800,834	+	3	169	70.32	-2.43	0.48	0.927917
6115	dm3.chr3L	3,800,888 – 3,800,956	- - - - - - - -	8412	3,800,888 – 3,800,956	+	7	68	70.28	-1.09	0.50	0.607217
6116	dm3.chr3L	3,806,739 – 3,806,823	- - - - - - - -	8413	3,806,739 – 3,806,823	+	6	86	70.87	-1.76	0.37	0.624988
6117	dm3.chr3L	3,815,433 – 3,815,550	- - - intron="intron;ID=intron_FBgn0004888:1_FBgn0004888:2;Name=Scsalpha-in;Parent=FBtr0073151,FBtr0303096;parent_type=mRNA" - - - -	8414	3,815,433 – 3,815,550	-	5	120	67.86	-1.09	0.58	0.813635
6118	dm3.chr3L	3,818,979 – 3,819,087	- - - intron="intron;ID=intron_FBgn0004875:1_FBgn0004875:3;Name=enc-in;Parent=FBtr0073152,FBtr0073153,FBtr0112845;parent_type=mRNA" - - - -	8415	3,818,979 – 3,819,087	+	5	110	88.05	-2.15	0.74	0.810867
6118	dm3.chr3L	3,818,979 – 3,819,087		8416	3,818,979 – 3,819,087	-	5	110	88.05	-2.36	0.72	0.870178
6119	dm3.chr3L	3,821,085 – 3,821,191	- - - intron="intron;ID=intron_FBgn0004875:1_FBgn0004875:3;Name=enc-in;Parent=FBtr0073152,FBtr0073153,FBtr0112845;parent_type=mRNA" - - - -	8417	3,821,085 – 3,821,191	-	6	110	77.08	-1.57	0.51	0.500000
6120	dm3.chr3L	3,852,361 – 3,852,415	- - - intron="intron;ID=intron_CG1072:7_CG1072:2;Name=Awh-in;Parent=FBtr0073156;parent_type=mRNA" - - - -	8418	3,852,361 – 3,852,415	-	7	60	75.34	-1.64	0.67	0.959203
6121	dm3.chr3L	3,868,143 – 3,868,300	- - - - - - - -	8419	3,868,143 – 3,868,300	-	4	167	75.35	-1.87	0.54	0.731622
6122	dm3.chr3L	3,880,572 – 3,880,670	- - - - - - - -	8420	3,880,572 – 3,880,670	-	12	111	74.82	-1.01	0.55	0.615613
6123	dm3.chr3L	3,881,720 – 3,881,816	- - - - - - - -	8421	3,881,720 – 3,881,816	-	10	108	70.49	-2.46	0.24	0.715415
6124	dm3.chr3L	3,883,319 – 3,883,419	- - - - - - - -	8422	3,883,319 – 3,883,419	+	4	117	80.26	-2.20	0.70	0.946403
6124	dm3.chr3L	3,883,319 – 3,883,419	- - - - - - - -	8423	3,883,319 – 3,883,419	-	4	117	80.26	-2.62	0.59	0.953031
6125	dm3.chr3L	3,886,435 – 3,886,533	- - - - - - - -	8424	3,886,435 – 3,886,533	+	5	98	94.49	-1.44	0.94	0.785324
6126	dm3.chr3L	3,889,794 – 3,889,897	- - - - - - - -	8425	3,889,794 – 3,889,897	-	10	105	67.50	-1.07	0.39	0.535245
6127	dm3.chr3L	3,890,840 – 3,890,946	- - - - - - - -	8426	3,890,840 – 3,890,935	-	10	110	75.90	-1.24	0.66	0.908775
6127	dm3.chr3L	3,890,840 – 3,890,946	- - - - - - - -	8427	3,890,851 – 3,890,946	-	10	110	77.15	-2.59	0.66	0.997279
6128	dm3.chr3L	3,893,191 – 3,893,360	FBnoncoding="snRNA;ID=FBtr0111039;Name=snRNA:U11-RA;Parent=FBgn0083987;Alias=FBtr0091696,CR33708-RA;Dbxref=FlyBase_Annotation_IDs:CR34151-RA,REFSEQ:NR_003121;score_text=Weakly" - - intron="intron;ID=intron_FBgn0026592:1_FBgn0026592:2;Name=Fie-in;Parent=FBtr0073157;parent_type=mRNA" "Rfam_10.0=RF00548;U11;AE014296.4/3893058-3893330\|8.6e-74" - - -	8428	3,893,191 – 3,893,285	-	9	108	67.82	-1.67	0.42	0.886253
				8429	3,893,220 – 3,893,323	-	9	111	66.05	-1.28	0.49	0.938649
				8430	3,893,252 – 3,893,360	-	12	114	58.52	-0.77	0.58	0.992366
6129	dm3.chr3L	3,917,728 – 3,917,819	- - - intron="intron;ID=intron_FBgn0004910:4_FBgn0004910:3;Name=Eip63F-1-in;Parent=FBtr0073174,FBtr0303420,FBtr0303421,FBtr0303422;parent_type=mRNA" - - - -	8431	3,917,728 – 3,917,819	-	4	112	72.25	-0.89	0.73	0.527284
6130	dm3.chr3L	3,927,693 – 3,927,793	- - - - - - - -	8432	3,927,693 – 3,927,793	+	6	108	66.93	-1.35	0.63	0.979659
6131	dm3.chr3L	3,941,608 – 3,941,728	- - CDS="CDS;ID=CDS_FBgn0027552:3_390;Name=CG10863-cds;Parent=FBtr0073171;parent_type=mRNA" - - - - -	8433	3,941,608 – 3,941,728	+	14	120	70.29	-1.02	0.46	0.836821
6132	dm3.chr3L	3,960,901 – 3,960,999	- - - - - - - -	8434	3,960,901 – 3,960,999	-	7	112	83.80	-1.62	0.90	0.946434
6133	dm3.chr3L	3,964,122 – 3,964,217	- - - - - - - -	8435	3,964,122 – 3,964,217	+	9	107	68.55	-1.21	0.58	0.969159
6134	dm3.chr3L	3,964,673 – 3,964,766	- - - - - - - -	8436	3,964,673 – 3,964,766	+	10	101	69.93	-1.79	0.40	0.938865
6134	dm3.chr3L	3,964,673 – 3,964,766	- - - - - - - -	8437	3,964,673 – 3,964,766	-	10	101	69.93	-1.53	0.41	0.875049
6135	dm3.chr3L	3,975,501 – 3,975,611	- - - - - - - -	8438	3,975,501 – 3,975,611	+	5	120	92.46	-1.69	0.85	0.654756
6136	dm3.chr3L	3,975,799 – 3,975,890	- - - - - - - -	8439	3,975,799 – 3,975,890	+	4	104	86.84	-1.85	0.84	0.866675
6137	dm3.chr3L	3,988,054 – 3,988,167	- - - - - - - -	8440	3,988,054 – 3,988,167	+	5	116	79.77	-1.94	0.61	0.823657
6137	dm3.chr3L	3,988,054 – 3,988,167	- - - - - - - -	8441	3,988,054 – 3,988,167	-	5	116	79.77	-3.28	0.58	0.996135
6138	dm3.chr3L	3,997,382 – 3,997,512	- - - - - - - -	8442	3,997,382 – 3,997,482	-	12	112	68.99	-0.10	0.64	0.530165
6138	dm3.chr3L	3,997,382 – 3,997,512	- - - - - - - -	8443	3,997,418 – 3,997,512	-	11	108	77.81	-2.50	0.69	0.996325
6139	dm3.chr3L	3,998,237 – 3,998,329	- - - - - - - -	8444	3,998,237 – 3,998,329	+	7	100	80.69	-2.70	0.64	0.983187
6140	dm3.chr3L	3,998,915 – 3,999,102	- - - - - - - -	8445	3,998,915 – 3,999,032	-	6	120	85.03	-2.13	0.57	0.554085
6140	dm3.chr3L	3,998,915 – 3,999,102	- - - - - - - -	8446	3,998,994 – 3,999,102	-	6	118	71.14	-1.06	0.63	0.874162
6141	dm3.chr3L	4,014,628 – 4,014,744	- - - - - - - -	8447	4,014,628 – 4,014,727	+	12	117	82.55	-1.42	0.66	0.531699
				8448	4,014,628 – 4,014,727	-	12	117	82.55	-1.70	0.58	0.515555
				8449	4,014,651 – 4,014,744	+	11	99	90.56	-2.29	0.87	0.969270
				8450	4,014,651 – 4,014,744	-	11	99	90.56	-1.83	0.80	0.732981
6142	dm3.chr3L	4,017,090 – 4,017,172	- - - - - - - -	8451	4,017,090 – 4,017,172	+	6	82	93.74	-2.32	0.75	0.724939
6143	dm3.chr3L	4,018,751 – 4,018,843	- - - - - - - -	8452	4,018,751 – 4,018,843	+	6	92	78.66	-1.39	0.59	0.559928
6144	dm3.chr3L	4,032,060 – 4,032,152	- - CDS="CDS;ID=CDS_FBgn0035486:1_327;Name=Gr64d-cds;Parent=FBtr0073198;parent_type=mRNA" - - - - -	8453	4,032,060 – 4,032,152	+	9	109	67.18	-2.23	0.43	0.992093
6144	dm3.chr3L	4,032,060 – 4,032,152		8454	4,032,060 – 4,032,152	-	9	109	67.18	-2.04	0.41	0.977668
6145	dm3.chr3L	4,043,020 – 4,043,074	- - - - - - - -	8455	4,043,020 – 4,043,074	+	5	54	89.63	-2.07	0.79	0.818208
6146	dm3.chr3L	4,069,319 – 4,069,417	- - - intron="intron;ID=intron_CG10776:1_CG10776:2;Name=wit-in;Parent=FBtr0073279;parent_type=mRNA" - - - -	8456	4,069,319 – 4,069,417	-	3	98	72.99	-1.83	0.63	0.758501
6147	dm3.chr3L	4,089,510 – 4,089,605	- - - intron="intron;ID=intron_CG14989:1_CG14989:2;Name=CG14989-in;Parent=FBtr0073207;parent_type=mRNA" - - - -	8457	4,089,510 – 4,089,605	-	4	98	84.71	-2.72	0.77	0.983518
6148	dm3.chr3L	4,095,357 – 4,095,474	- - - intron="intron;ID=intron_FBgn0035497:4_FBgn0035497:3;Name=CG14995-in;Parent=FBtr0300877,FBtr0073273,FBtr0073271,FBtr0073272,FBtr0302303,FBtr0302304;parent_type=mRNA" - - - -	8458	4,095,357 – 4,095,474	-	5	120	79.32	-2.45	0.41	0.627935
6149	dm3.chr3L	4,109,434 – 4,109,531	- - - intron="intron;ID=intron_CG14992:1_CG14992:2;Name=Ack-in;Parent=FBtr0073211;parent_type=mRNA" - - - -	8459	4,109,434 – 4,109,531	+	5	97	93.95	-1.26	0.93	0.636662
6150	dm3.chr3L	4,124,915 – 4,125,005	- - CDS="CDS;ID=CDS_FBgn0035500:3_425;Name=ens-cds;Parent=FBtr0073269,FBtr0073266,FBtr0073268,FBtr0073267,FBtr0073265,FBtr0113135;parent_type=mRNA" - - - - -	8460	4,124,915 – 4,125,005	+	9	90	97.78	-1.71	0.93	0.816367
6151	dm3.chr3L	4,129,600 – 4,129,696	- - - - - - - -	8461	4,129,600 – 4,129,696	-	10	112	68.76	-0.23	0.60	0.518667
6152	dm3.chr3L	4,143,707 – 4,143,802	- - - - - - - -	8462	4,143,707 – 4,143,802	+	11	102	62.10	-1.52	0.26	0.608964
6153	dm3.chr3L	4,144,615 – 4,144,717	- - CDS="CDS;ID=CDS_CG32260:3_311;Name=CG32260-cds;Parent=FBtr0073214;parent_type=mRNA" - - - - -	8463	4,144,615 – 4,144,717	-	9	120	59.71	-1.14	0.33	0.585533
6154	dm3.chr3L	4,152,631 – 4,152,723	- - - - - - - -	8464	4,152,631 – 4,152,723	-	8	103	66.10	-1.31	0.39	0.658318
6155	dm3.chr3L	4,161,927 – 4,161,978	- - - - - - - -	8465	4,161,927 – 4,161,978	-	5	54	94.64	-0.71	1.00	0.568750
6156	dm3.chr3L	4,173,174 – 4,173,224	- - CDS="CDS;ID=CDS_FBgn0028736:4_390;Name=Ero1L-cds;Parent=FBtr0073217;parent_type=mRNA" - - - - -	8466	4,173,174 – 4,173,224	-	11	50	84.76	-1.73	0.71	0.823514
6157	dm3.chr3L	4,177,129 – 4,177,181	- - - intron="intron;ID=intron_FBgn0035504:7_FBgn0035504:6;Name=Teh4-in;Parent=FBtr0301645;parent_type=mRNA" - - - -	8467	4,177,129 – 4,177,181	+	3	53	77.22	-0.55	1.07	0.862008
6158	dm3.chr3L	4,177,967 – 4,178,084	- - - - - - - -	8468	4,177,967 – 4,178,084	+	6	117	72.88	-0.73	0.70	0.782666
6159	dm3.chr3L	4,192,006 – 4,192,123	- - - intron="intron;ID=intron_CG1232:2_CG1232:3;Name=tipE-in;Parent=FBtr0073219,FBtr0073220;parent_type=mRNA" - - - -	8469	4,192,006 – 4,192,123	+	6	120	72.57	-2.48	0.45	0.982772
6159	dm3.chr3L	4,192,006 – 4,192,123		8470	4,192,006 – 4,192,123	-	6	120	72.57	-1.83	0.45	0.845238
6160	dm3.chr3L	4,213,560 – 4,213,738	- - - - - - - -	8471	4,213,560 – 4,213,738	+	3	178	83.27	-1.63	0.76	0.525482
6160	dm3.chr3L	4,213,560 – 4,213,738	- - - - - - - -	8472	4,213,560 – 4,213,738	-	3	178	83.27	-2.45	0.80	0.967218
6161	dm3.chr3L	4,219,156 – 4,219,229	- - CDS="CDS;ID=CDS_FBgn0035514:8_368;Name=CG1332-cds;Parent=FBtr0073224;parent_type=mRNA" - - - - -	8473	4,219,156 – 4,219,229	+	15	73	75.23	-0.95	0.50	0.704137
6162	dm3.chr3L	4,221,721 – 4,221,817	- - - intron="intron;ID=intron_FBgn0035514:8_FBgn0035514:9;Name=CG1332-in;Parent=FBtr0073224;parent_type=mRNA" - - - -	8474	4,221,721 – 4,221,817	-	5	97	85.58	-1.52	0.84	0.804147
6163	dm3.chr3L	4,233,178 – 4,233,288	- - - - - - - -	8475	4,233,178 – 4,233,288	-	6	112	70.97	-1.45	0.57	0.943576
6164	dm3.chr3L	4,237,908 – 4,238,003	- - - - - - - -	8476	4,237,908 – 4,238,003	+	7	108	64.31	-2.00	0.26	0.820293
6165	dm3.chr3L	4,244,939 – 4,245,040	- - CDS="CDS;ID=CDS_CG1258:5_277;Name=pav-cds;Parent=FBtr0073227;parent_type=mRNA" - - - - -	8477	4,244,939 – 4,245,040	-	3	101	99.34	-1.31	1.00	0.828029
6166	dm3.chr3L	4,264,596 – 4,264,761	- - - intron="intron;ID=intron_CG1273:1_CG1273:2;Name=CG1273-in;Parent=FBtr0073231;parent_type=mRNA" - - - -	8478	4,264,596 – 4,264,761	+	6	167	76.42	-1.75	0.58	0.905457
6167	dm3.chr3L	4,264,915 – 4,265,052	- - - intron="intron;ID=intron_CG1273:1_CG1273:2;Name=CG1273-in;Parent=FBtr0073231;parent_type=mRNA" - - - -	8479	4,264,915 – 4,265,014	+	4	104	64.59	-2.45	0.24	0.584631
6167	dm3.chr3L	4,264,915 – 4,265,052		8480	4,264,937 – 4,265,052	+	3	115	74.77	-2.34	0.77	0.983093
6168	dm3.chr3L	4,268,071 – 4,268,174	- - - - - - - -	8481	4,268,071 – 4,268,174	+	8	120	81.38	-1.78	0.66	0.776598
6169	dm3.chr3L	4,286,379 – 4,286,479	- - - - - - - -	8482	4,286,379 – 4,286,479	-	3	100	96.64	-1.06	0.97	0.582950
6170	dm3.chr3L	4,322,229 – 4,322,315	- - - - - - - -	8483	4,322,229 – 4,322,315	+	6	94	68.01	-1.50	0.53	0.955921
6171	dm3.chr3L	4,339,902 – 4,339,995	- - - intron="intron;ID=intron_FBgn0035533:13_FBgn0035533:12;Name=Cip4-in;Parent=FBtr0073339,FBtr0113138,FBtr0306094,FBtr0306095,FBtr0306096;parent_type=mRNA" - - - -	8484	4,339,902 – 4,339,995	-	3	110	78.40	-1.93	0.63	0.623717
6172	dm3.chr3L	4,342,807 – 4,342,904	- - - intron="intron;ID=intron_FBgn0035533:13_FBgn0035533:12;Name=Cip4-in;Parent=FBtr0073339,FBtr0113138,FBtr0306094,FBtr0306095,FBtr0306096;parent_type=mRNA" - - - -	8485	4,342,807 – 4,342,904	+	6	100	66.08	-1.30	0.39	0.594977
6173	dm3.chr3L	4,343,294 – 4,343,385	- - - intron="intron;ID=intron_FBgn0035533:13_FBgn0035533:12;Name=Cip4-in;Parent=FBtr0073339,FBtr0113138,FBtr0306094,FBtr0306095,FBtr0306096;parent_type=mRNA" - - - -	8486	4,343,294 – 4,343,385	+	5	91	81.38	-1.21	0.81	0.701980
6173	dm3.chr3L	4,343,294 – 4,343,385		8487	4,343,294 – 4,343,385	-	5	91	81.38	-1.16	0.78	0.571868
6174	dm3.chr3L	4,347,170 – 4,347,265	- - - intron="intron;ID=intron_FBgn0035533:13_FBgn0035533:12;Name=Cip4-in;Parent=FBtr0073339,FBtr0113138,FBtr0306094,FBtr0306095,FBtr0306096;parent_type=mRNA" - - - -	8488	4,347,170 – 4,347,265	+	7	102	69.98	-1.75	0.54	0.985041
6175	dm3.chr3L	4,374,833 – 4,374,888	- - - intron="intron;ID=intron_CG18314:2_CG18314:3;Name=DopEcR-in;Parent=FBtr0073337,FBtr0100185;parent_type=mRNA" - - - -	8489	4,374,833 – 4,374,888	-	5	55	91.09	-1.68	0.86	0.755137
6176	dm3.chr3L	4,383,205 – 4,383,265	- - - - - - - -	8490	4,383,205 – 4,383,265	-	3	60	84.97	-2.65	0.83	0.983000
6177	dm3.chr3L	4,385,784 – 4,385,835	- - - intron="intron;ID=intron_CG7447:1_CG7447:2;Name=slow-in;Parent=FBtr0073291;parent_type=mRNA" - - - -	8491	4,385,784 – 4,385,835	+	8	54	78.63	-3.01	0.85	0.998612
6177	dm3.chr3L	4,385,784 – 4,385,835		8492	4,385,784 – 4,385,835	-	8	54	78.63	-2.71	0.74	0.997134
6178	dm3.chr3L	4,389,539 – 4,389,632	- - - intron="intron;ID=intron_CG7447:1_CG7447:2;Name=slow-in;Parent=FBtr0073291;parent_type=mRNA" - - - -	8493	4,389,539 – 4,389,632	-	5	93	86.29	-1.88	0.84	0.910584
6179	dm3.chr3L	4,403,068 – 4,403,166	- - - - - - - -	8494	4,403,068 – 4,403,166	+	9	110	73.31	-2.41	0.32	0.799697
6180	dm3.chr3L	4,408,124 – 4,408,180	- - - intron="intron;ID=intron_FBgn0035542:2_FBgn0035542:5;Name=CG11347-in;Parent=FBtr0073294;parent_type=mRNA" - - - -	8495	4,408,124 – 4,408,180	+	8	64	73.79	-2.86	0.70	0.999183
6181	dm3.chr3L	4,415,092 – 4,415,183	- - - intron="intron;ID=intron_FBgn0035542:4_FBgn0035542:5;Name=CG11347-in;Parent=FBtr0073296;parent_type=mRNA" - - - -	8496	4,415,092 – 4,415,183	+	7	104	77.44	-1.78	0.47	0.519726
6182	dm3.chr3L	4,423,393 – 4,423,484	- - - intron="intron;ID=intron_FBgn0035543:1_FBgn0035543:2;Name=CG15020-in;Parent=FBtr0073298;parent_type=mRNA" - - - -	8497	4,423,393 – 4,423,484	-	4	104	72.24	-1.65	0.51	0.596897
6183	dm3.chr3L	4,424,089 – 4,424,186	- - - intron="intron;ID=intron_FBgn0035543:2_FBgn0035543:3;Name=CG15020-in;Parent=FBtr0073298;parent_type=mRNA" - - - -	8498	4,424,089 – 4,424,186	+	8	110	81.85	-1.67	0.61	0.578294
6184	dm3.chr3L	4,439,005 – 4,439,099	- - - - - - - -	8499	4,439,005 – 4,439,099	+	4	94	99.47	-1.85	1.00	0.954201
6184	dm3.chr3L	4,439,005 – 4,439,099	- - - - - - - -	8500	4,439,005 – 4,439,099	-	4	94	99.47	-3.62	1.00	0.998017
6185	dm3.chr3L	4,442,258 – 4,442,363	- - - - - - - -	8501	4,442,258 – 4,442,363	+	6	108	78.55	-2.08	0.53	0.870346
6185	dm3.chr3L	4,442,258 – 4,442,363	- - - - - - - -	8502	4,442,258 – 4,442,363	-	6	108	78.55	-3.04	0.58	0.996551
6186	dm3.chr3L	4,479,139 – 4,479,230	- - - - - - - -	8503	4,479,139 – 4,479,230	-	6	101	74.80	-1.55	0.49	0.539652
6187	dm3.chr3L	4,480,384 – 4,480,487	- - CDS="CDS;ID=CDS_CG7465:2_320;Name=CG7465-cds;Parent=FBtr0073306;parent_type=mRNA" - - - - -	8504	4,480,384 – 4,480,487	+	12	112	75.14	-1.64	0.73	0.991374
6188	dm3.chr3L	4,481,372 – 4,481,461	- - - - - - - -	8505	4,481,372 – 4,481,461	+	11	98	65.69	-1.34	0.39	0.863926
6189	dm3.chr3L	4,516,674 – 4,516,734	- - - intron="intron;ID=intron_FBgn0014073:5_FBgn0014073:4;Name=Tie-in;Parent=FBtr0073323;parent_type=mRNA" - - - -	8506	4,516,674 – 4,516,734	-	3	60	75.56	-1.66	0.70	0.797105
6190	dm3.chr3L	4,517,832 – 4,517,931	- - - intron="intron;ID=intron_FBgn0014073:5_FBgn0014073:4;Name=Tie-in;Parent=FBtr0073323;parent_type=mRNA" - - - -	8507	4,517,832 – 4,517,931	-	8	109	78.78	-1.65	0.62	0.757584
6191	dm3.chr3L	4,524,296 – 4,524,387	- - CDS="CDS;ID=CDS_FBgn0014073:5_461;Name=Tie-cds;Parent=FBtr0073323;parent_type=mRNA" - - - - -	8508	4,524,296 – 4,524,387	+	9	101	80.43	-1.29	0.69	0.647502
6192	dm3.chr3L	4,538,486 – 4,538,606	- - CDS="CDS;ID=CDS_FBgn0035557:6_469;Name=CG11353-cds;Parent=FBtr0073308,FBtr0073309;parent_type=mRNA" - - - - -	8509	4,538,486 – 4,538,606	-	7	120	76.43	-1.33	0.55	0.672434
6193	dm3.chr3L	4,545,657 – 4,545,777	- - - intron="intron;ID=intron_FBgn0035558:4_FBgn0035558:6;Name=CG11357-in;Parent=FBtr0073310;parent_type=mRNA" - - - -	8510	4,545,657 – 4,545,777	+	5	120	93.66	-1.68	0.91	0.830688
6193	dm3.chr3L	4,545,657 – 4,545,777		8511	4,545,657 – 4,545,777	-	5	120	93.66	-1.51	0.89	0.651012
6194	dm3.chr3L	4,546,226 – 4,546,334	- - - intron="intron;ID=intron_FBgn0035558:4_FBgn0035558:6;Name=CG11357-in;Parent=FBtr0073310;parent_type=mRNA" - - - -	8512	4,546,226 – 4,546,334	+	5	118	82.60	-2.23	0.65	0.870183
6195	dm3.chr3L	4,548,324 – 4,548,423	- - - intron="intron;ID=intron_FBgn0035558:4_FBgn0035558:6;Name=CG11357-in;Parent=FBtr0073310;parent_type=mRNA" - - - -	8513	4,548,324 – 4,548,423	+	6	102	75.39	-1.77	0.68	0.971349
6196	dm3.chr3L	4,549,953 – 4,550,004	- - - intron="intron;ID=intron_FBgn0035558:4_FBgn0035558:6;Name=CG11357-in;Parent=FBtr0073310;parent_type=mRNA" - - - -	8514	4,549,953 – 4,550,004	+	4	51	91.75	-1.20	1.06	0.960527
6196	dm3.chr3L	4,549,953 – 4,550,004		8515	4,549,953 – 4,550,004	-	4	51	91.75	-0.78	0.98	0.569649
6197	dm3.chr3L	4,562,158 – 4,562,213	- - - intron="intron;ID=intron_FBgn0260657:2_FBgn0260657:3;Name=CG42540-in;Parent=FBtr0301097;parent_type=mRNA" - - - -	8516	4,562,158 – 4,562,213	+	4	56	95.20	-1.38	0.90	0.507850
6198	dm3.chr3L	4,567,545 – 4,567,613	- - - intron="intron;ID=intron_FBgn0260657:4_FBgn0260657:5;Name=CG42540-in;Parent=FBtr0301098;parent_type=mRNA" - - - -	8517	4,567,545 – 4,567,613	-	5	68	95.29	-1.82	0.97	0.946795
6199	dm3.chr3L	4,571,753 – 4,571,807	- - - intron="intron;ID=intron_FBgn0260657:5_FBgn0260657:7;Name=CG42540-in;Parent=FBtr0301098;parent_type=mRNA" - - - -	8518	4,571,753 – 4,571,807	-	5	54	94.44	-2.27	0.83	0.859057
6200	dm3.chr3L	4,572,310 – 4,572,363	- - - intron="intron;ID=intron_FBgn0260657:5_FBgn0260657:7;Name=CG42540-in;Parent=FBtr0301098;parent_type=mRNA" - - - -	8519	4,572,310 – 4,572,363	-	8	60	73.38	-1.42	0.61	0.945179
6201	dm3.chr3L	4,580,170 – 4,580,274	- - - intron="intron;ID=intron_FBgn0260657:10_FBgn0260657:11;Name=CG42540-in;Parent=FBtr0301095,FBtr0301096,FBtr0301097,FBtr0301098,FBtr0304988;parent_type=mRNA" - - - -	8520	4,580,170 – 4,580,274	-	6	107	72.62	-1.63	0.63	0.973134
6202	dm3.chr3L	4,580,405 – 4,580,496	- - - intron="intron;ID=intron_FBgn0260657:10_FBgn0260657:11;Name=CG42540-in;Parent=FBtr0301095,FBtr0301096,FBtr0301097,FBtr0301098,FBtr0304988;parent_type=mRNA" - - - -	8521	4,580,405 – 4,580,496	+	5	94	95.23	-2.86	0.73	0.880062
6203	dm3.chr3L	4,580,563 – 4,580,656	- - - intron="intron;ID=intron_FBgn0260657:10_FBgn0260657:11;Name=CG42540-in;Parent=FBtr0301095,FBtr0301096,FBtr0301097,FBtr0301098,FBtr0304988;parent_type=mRNA" - - - -	8522	4,580,563 – 4,580,656	+	6	104	88.51	-4.61	0.91	0.999197
6203	dm3.chr3L	4,580,563 – 4,580,656		8523	4,580,563 – 4,580,656	-	6	104	88.51	-2.30	0.83	0.959752
6204	dm3.chr3L	4,588,052 – 4,588,143	- - CDS="CDS;ID=CDS_FBgn0260657:12_390;Name=CG42540-cds;Parent=FBtr0301096,FBtr0301097,FBtr0301098;parent_type=mRNA" - - - - -	8524	4,588,052 – 4,588,143	+	13	92	89.03	-1.12	0.84	0.500000
6205	dm3.chr3L	4,590,450 – 4,590,518	- - - - - - - -	8525	4,590,450 – 4,590,518	-	6	68	71.29	-2.51	0.66	0.998894
6206	dm3.chr3L	4,590,588 – 4,590,671	- - - - - - - -	8526	4,590,588 – 4,590,671	+	8	89	53.52	-1.92	0.22	0.905619
6207	dm3.chr3L	4,602,093 – 4,602,150	- - - intron="intron;ID=intron_FBgn0003501:8_FBgn0003501:7;Name=Src64B-in;Parent=FBtr0100507,FBtr0073321,FBtr0304990,FBtr0100508,FBtr0302593,FBtr0302594,FBtr0304989;parent_type=mRNA" - - - -	8527	4,602,093 – 4,602,150	-	13	63	79.54	-1.41	0.52	0.601319
6208	dm3.chr3L	4,609,681 – 4,609,765	- - - intron="intron;ID=intron_FBgn0003501:8_FBgn0003501:7;Name=Src64B-in;Parent=FBtr0100507,FBtr0073321,FBtr0304990,FBtr0100508,FBtr0302593,FBtr0302594,FBtr0304989;parent_type=mRNA" - - - -	8528	4,609,681 – 4,609,765	+	4	84	81.94	-1.82	0.69	0.719219
6208	dm3.chr3L	4,609,681 – 4,609,765		8529	4,609,681 – 4,609,765	-	4	84	81.94	-2.21	0.61	0.784444
6209	dm3.chr3L	4,614,630 – 4,614,798	- - - - - - - -	8530	4,614,630 – 4,614,736	+	5	117	79.86	-2.67	0.54	0.947679
				8531	4,614,630 – 4,614,736	-	5	117	79.86	-3.52	0.54	0.996173
				8532	4,614,667 – 4,614,762	+	6	118	66.43	-2.80	0.49	0.998497
				8533	4,614,667 – 4,614,762	-	6	118	66.43	-3.00	0.40	0.996759
				8534	4,614,701 – 4,614,798	-	6	115	67.67	-2.22	0.36	0.894083
6210	dm3.chr3L	4,615,198 – 4,615,307	- - - - - - - -	8535	4,615,198 – 4,615,307	+	5	109	78.42	-1.74	0.54	0.500000
6211	dm3.chr3L	4,615,647 – 4,615,768	- - - - - - - -	8536	4,615,647 – 4,615,768	-	5	132	91.31	-3.12	0.75	0.978595
6212	dm3.chr3L	4,616,387 – 4,616,491	- - - - - - - -	8537	4,616,387 – 4,616,491	-	5	104	91.85	-2.33	0.82	0.915974
6213	dm3.chr3L	4,618,357 – 4,618,437	- - - - - - - -	8538	4,618,357 – 4,618,437	-	6	80	78.34	-1.31	0.61	0.575445
6214	dm3.chr3L	4,618,850 – 4,618,934	- - - - - - - -	8539	4,618,850 – 4,618,934	+	5	84	82.33	-1.10	0.82	0.538731
6215	dm3.chr3L	4,619,878 – 4,619,941	- - - - - - - -	8540	4,619,878 – 4,619,941	-	6	74	73.00	-1.57	0.60	0.898670
6216	dm3.chr3L	4,626,132 – 4,626,251	- - - - - - - -	8541	4,626,132 – 4,626,251	+	5	120	87.18	-2.31	0.84	0.968420
6217	dm3.chr3L	4,629,069 – 4,629,192	- - - - - - - -	8542	4,629,069 – 4,629,183	+	13	120	80.07	-1.99	0.49	0.871400
				8543	4,629,069 – 4,629,183	-	13	120	80.07	-1.87	0.59	0.946986
				8544	4,629,080 – 4,629,192	+	13	123	81.16	-1.62	0.59	0.778727
				8545	4,629,080 – 4,629,192	-	13	123	81.16	-1.53	0.63	0.810421
6218	dm3.chr3L	4,633,411 – 4,633,519	- - - intron="intron;ID=intron_FBgn0262870:5_FBgn0262870:1;Name=axo-in;Parent=FBtr0306206;parent_type=mRNA" - - - -	8546	4,633,411 – 4,633,519	-	5	109	83.72	-1.45	0.82	0.794162
6219	dm3.chr3L	4,655,653 – 4,655,772	- - - intron="intron;ID=intron_FBgn0262870:13_FBgn0262870:12;Name=axo-in;Parent=FBtr0302646,FBtr0306206,FBtr0306207,FBtr0306208;parent_type=mRNA" - - - -	8547	4,655,653 – 4,655,772	-	5	120	76.06	-1.64	0.50	0.515672
6220	dm3.chr3L	4,662,751 – 4,662,842	- - - intron="intron;ID=intron_FBgn0262870:17_FBgn0262870:16;Name=axo-in;Parent=FBtr0302646,FBtr0306206,FBtr0306207,FBtr0306208;parent_type=mRNA" - - - -	8548	4,662,751 – 4,662,842	+	12	118	69.62	-2.04	0.34	0.627726
6221	dm3.chr3L	4,675,992 – 4,676,091	- - - intron="intron;ID=intron_FBgn0262870:24_FBgn0262870:23;Name=axo-in;Parent=FBtr0302646,FBtr0306206,FBtr0306207,FBtr0306208;parent_type=mRNA" - - - -	8549	4,675,992 – 4,676,091	+	3	99	77.86	-2.49	0.52	0.722111
6222	dm3.chr3L	4,677,987 – 4,678,107	- - CDS="CDS;ID=CDS_FBgn0085295:1_363;Name=CG34266-cds;Parent=FBtr0112461;parent_type=mRNA" intron="intron;ID=intron_FBgn0262870:24_FBgn0262870:23;Name=axo-in;Parent=FBtr0302646,FBtr0306206,FBtr0306207,FBtr0306208;parent_type=mRNA" - - - -	8550	4,677,987 – 4,678,107	-	10	120	70.23	-2.04	0.39	0.969807
6223	dm3.chr3L	4,693,939 – 4,694,039	- - - intron="intron;ID=intron_FBgn0035574:1_FBgn0035574:2;Name=Gef64C-in;Parent=FBtr0073345;parent_type=mRNA" - - - -	8551	4,693,939 – 4,694,039	-	10	113	74.41	-1.87	0.44	0.783869
6224	dm3.chr3L	4,710,542 – 4,710,659	- - - intron="intron;ID=intron_FBgn0035574:2_FBgn0035574:3;Name=Gef64C-in;Parent=FBtr0073345;parent_type=mRNA" - - - -	8552	4,710,542 – 4,710,655	-	5	120	87.31	-1.72	0.77	0.643971
6224	dm3.chr3L	4,710,542 – 4,710,659		8553	4,710,546 – 4,710,659	-	5	120	87.65	-1.85	0.78	0.756875
6225	dm3.chr3L	4,727,188 – 4,727,241	- - - intron="intron;ID=intron_FBgn0035574:2_FBgn0035574:3;Name=Gef64C-in;Parent=FBtr0073345;parent_type=mRNA" - - - -	8554	4,727,188 – 4,727,241	+	8	53	95.82	-1.25	0.92	0.548725
6225	dm3.chr3L	4,727,188 – 4,727,241		8555	4,727,188 – 4,727,241	-	8	53	95.82	-1.85	1.05	0.989166
6226	dm3.chr3L	4,735,030 – 4,735,112	- - - intron="intron;ID=intron_FBgn0035574:3_FBgn0035574:4;Name=Gef64C-in;Parent=FBtr0073345;parent_type=mRNA" - - - -	8556	4,735,030 – 4,735,112	+	12	83	84.78	-0.95	0.81	0.617371
6227	dm3.chr3L	4,747,533 – 4,747,647	- - - intron="intron;ID=intron_FBgn0035574:3_FBgn0035574:4;Name=Gef64C-in;Parent=FBtr0073345;parent_type=mRNA" - - - -	8557	4,747,533 – 4,747,647	+	3	120	73.80	-3.63	0.58	0.998477
6228	dm3.chr3L	4,753,996 – 4,754,057	- - - intron="intron;ID=intron_FBgn0035574:5_FBgn0035574:6;Name=Gef64C-in;Parent=FBtr0073345;parent_type=mRNA" - - - -	8558	4,753,996 – 4,754,057	-	6	61	66.89	-1.14	0.40	0.541321
6229	dm3.chr3L	4,756,035 – 4,756,140	- - - intron="intron;ID=intron_FBgn0035574:5_FBgn0035574:6;Name=Gef64C-in;Parent=FBtr0073345;parent_type=mRNA" - - - -	8559	4,756,035 – 4,756,140	-	3	105	71.71	-1.18	0.79	0.770846
6230	dm3.chr3L	4,764,235 – 4,764,286	- - - intron="intron;ID=intron_FBgn0035574:5_FBgn0035574:6;Name=Gef64C-in;Parent=FBtr0073345;parent_type=mRNA" - - - -	8560	4,764,235 – 4,764,286	-	5	52	99.22	-0.31	1.08	0.655042
6231	dm3.chr3L	4,776,472 – 4,776,573	- - - intron="intron;ID=intron_FBgn0035574:7_FBgn0035574:8;Name=Gef64C-in;Parent=FBtr0073345;parent_type=mRNA" - - - -	8561	4,776,472 – 4,776,573	-	8	114	69.81	-1.68	0.39	0.689752
6232	dm3.chr3L	4,781,002 – 4,781,121	- - - intron="intron;ID=intron_FBgn0035574:7_FBgn0035574:8;Name=Gef64C-in;Parent=FBtr0073345;parent_type=mRNA" - - - -	8562	4,781,002 – 4,781,104	-	12	116	91.67	-2.09	0.72	0.598713
6232	dm3.chr3L	4,781,002 – 4,781,121		8563	4,781,027 – 4,781,121	-	12	107	81.71	-1.58	0.61	0.719771
6233	dm3.chr3L	4,788,817 – 4,788,909	- - - intron="intron;ID=intron_FBgn0035574:7_FBgn0035574:8;Name=Gef64C-in;Parent=FBtr0073345;parent_type=mRNA" - - - -	8564	4,788,817 – 4,788,909	-	8	108	61.65	-1.58	0.30	0.741535
6234	dm3.chr3L	4,797,267 – 4,797,365	- - - - - - - -	8565	4,797,267 – 4,797,365	-	12	107	83.63	-2.89	0.63	0.993057
6235	dm3.chr3L	4,854,216 – 4,854,282	- - - - - - - -	8566	4,854,216 – 4,854,282	+	9	71	73.99	-1.74	0.42	0.734198
6236	dm3.chr3L	4,854,774 – 4,854,870	- - - - - - - -	8567	4,854,774 – 4,854,870	+	5	106	78.90	-1.62	0.62	0.605919
6237	dm3.chr3L	4,878,266 – 4,878,376	- - - intron="intron;ID=intron_FBgn0035581:27_FBgn0035581:28;Name=CG17150-in;Parent=FBtr0289982;parent_type=mRNA" - - - -	8568	4,878,266 – 4,878,376	+	5	116	66.11	-2.39	0.35	0.962049
6237	dm3.chr3L	4,878,266 – 4,878,376		8569	4,878,266 – 4,878,376	-	5	116	66.11	-1.67	0.38	0.769345
6238	dm3.chr3L	4,880,621 – 4,880,740	- - - intron="intron;ID=intron_FBgn0035581:29_FBgn0035581:30;Name=CG17150-in;Parent=FBtr0289982;parent_type=mRNA" - - - -	8570	4,880,621 – 4,880,711	-	12	113	77.70	-1.21	0.66	0.706654
6238	dm3.chr3L	4,880,621 – 4,880,740		8571	4,880,644 – 4,880,740	-	9	102	84.70	-1.55	0.68	0.619430
6239	dm3.chr3L	4,895,942 – 4,895,997	- - - - - - - -	8572	4,895,942 – 4,895,997	-	5	60	69.65	-1.15	0.67	0.918194
6240	dm3.chr3L	4,915,512 – 4,915,619	- - - intron="intron;ID=intron_FBgn0028699:4_FBgn0028699:5;Name=Rh50-in;Parent=FBtr0073354;parent_type=mRNA" - - - -	8573	4,915,512 – 4,915,602	+	6	90	71.76	-1.19	0.56	0.779351
6240	dm3.chr3L	4,915,512 – 4,915,619		8574	4,915,528 – 4,915,619	+	5	91	96.04	-1.54	0.94	0.803208
6241	dm3.chr3L	4,917,872 – 4,917,972	- - - intron="intron;ID=intron_FBgn0028699:5_FBgn0028699:6;Name=Rh50-in;Parent=FBtr0073354;parent_type=mRNA" - - - -	8575	4,917,872 – 4,917,972	+	7	101	68.19	-1.80	0.36	0.892755
6242	dm3.chr3L	4,920,810 – 4,920,911	- - - - - - - -	8576	4,920,810 – 4,920,911	-	9	113	67.14	-0.47	0.61	0.781524
6243	dm3.chr3L	4,947,279 – 4,947,418	- - - intron="intron;ID=intron_FBgn0005775:2_FBgn0005775:1;Name=Con-in;Parent=FBtr0073375;parent_type=mRNA" - - - -	8577	4,947,279 – 4,947,392	-	7	117	71.04	-2.80	0.43	0.994261
6243	dm3.chr3L	4,947,279 – 4,947,418		8578	4,947,318 – 4,947,418	-	7	108	68.56	-2.28	0.32	0.859932
6244	dm3.chr3L	4,948,547 – 4,948,639	- - - intron="intron;ID=intron_FBgn0005775:2_FBgn0005775:1;Name=Con-in;Parent=FBtr0073375;parent_type=mRNA" - - - -	8579	4,948,547 – 4,948,639	+	6	100	77.61	-1.32	0.64	0.606999
6245	dm3.chr3L	4,952,161 – 4,952,221	- - - intron="intron;ID=intron_FBgn0005775:2_FBgn0005775:1;Name=Con-in;Parent=FBtr0073375;parent_type=mRNA" - - - -	8580	4,952,161 – 4,952,221	+	3	60	92.22	-2.09	0.82	0.769233
6246	dm3.chr3L	4,958,817 – 4,958,964	- - - intron="intron;ID=intron_FBgn0005775:4_FBgn0005775:3;Name=Con-in;Parent=FBtr0073375;parent_type=mRNA" - - - -	8581	4,958,817 – 4,958,915	+	10	120	84.74	-2.56	0.78	0.984760
				8582	4,958,817 – 4,958,915	-	10	120	84.74	-1.73	0.76	0.790785
				8583	4,958,839 – 4,958,951	+	10	117	79.74	-2.12	0.74	0.987350
				8584	4,958,839 – 4,958,951	-	10	117	79.74	-2.10	0.55	0.912692
				8585	4,958,853 – 4,958,964	+	9	114	77.91	-1.73	0.76	0.980447
				8586	4,958,853 – 4,958,964	-	9	114	77.91	-1.50	0.53	0.643778
6247	dm3.chr3L	4,961,156 – 4,961,274	- - - intron="intron;ID=intron_FBgn0005775:4_FBgn0005775:3;Name=Con-in;Parent=FBtr0073375;parent_type=mRNA" - - - -	8587	4,961,156 – 4,961,274	+	3	120	89.44	-1.59	0.86	0.671521
6248	dm3.chr3L	4,974,157 – 4,974,258	- - - intron="intron;ID=intron_FBgn0005775:5_FBgn0005775:4;Name=Con-in;Parent=FBtr0073375;parent_type=mRNA" - - - -	8588	4,974,157 – 4,974,258	-	3	109	83.79	-2.10	0.65	0.563851
6249	dm3.chr3L	4,977,581 – 4,977,640	- - - - - - - -	8589	4,977,581 – 4,977,640	+	9	59	94.87	-1.43	0.91	0.692427
6249	dm3.chr3L	4,977,581 – 4,977,640	- - - - - - - -	8590	4,977,581 – 4,977,640	-	9	59	94.87	-2.44	0.81	0.906011
6250	dm3.chr3L	4,986,153 – 4,986,278	- - - - - - - -	8591	4,986,153 – 4,986,257	+	3	104	91.32	-3.20	0.79	0.985073
6250	dm3.chr3L	4,986,153 – 4,986,278	- - - - - - - -	8592	4,986,174 – 4,986,278	+	3	104	91.32	-2.32	0.69	0.500000
6251	dm3.chr3L	4,988,555 – 4,988,661	- - - - - - - -	8593	4,988,555 – 4,988,661	+	12	120	92.12	-2.66	0.66	0.784748
6252	dm3.chr3L	5,005,063 – 5,005,155	- - - - - - - -	8594	5,005,063 – 5,005,155	+	6	97	93.58	-1.35	0.91	0.639972
6253	dm3.chr3L	5,008,887 – 5,008,980	- - - - - - - -	8595	5,008,887 – 5,008,980	+	10	97	91.23	-4.10	0.81	0.998715
6253	dm3.chr3L	5,008,887 – 5,008,980	- - - - - - - -	8596	5,008,887 – 5,008,980	-	10	97	91.23	-3.41	0.78	0.995192
6254	dm3.chr3L	5,014,821 – 5,014,942	- - - - - - - -	8597	5,014,821 – 5,014,925	+	4	105	67.01	-1.29	0.56	0.753626
6254	dm3.chr3L	5,014,821 – 5,014,942	- - - - - - - -	8598	5,014,851 – 5,014,942	+	5	92	80.42	-1.46	0.71	0.680105
6255	dm3.chr3L	5,017,963 – 5,018,055	- - - - - - - -	8599	5,017,963 – 5,018,055	+	9	113	83.95	-2.40	0.73	0.970655
6255	dm3.chr3L	5,017,963 – 5,018,055	- - - - - - - -	8600	5,017,963 – 5,018,055	-	9	113	83.95	-2.04	0.67	0.834176
6256	dm3.chr3L	5,057,648 – 5,057,741	- - - - - - - -	8601	5,057,648 – 5,057,741	-	6	102	75.54	-1.05	0.60	0.500000
6257	dm3.chr3L	5,057,862 – 5,057,915	- - - - - - - -	8602	5,057,862 – 5,057,915	+	3	53	94.97	-1.98	0.83	0.631342
6258	dm3.chr3L	5,066,121 – 5,066,174	- - - - - - - -	8603	5,066,121 – 5,066,174	+	7	58	75.84	-2.49	0.47	0.971580
6259	dm3.chr3L	5,072,693 – 5,072,754	- - - - - - - -	8604	5,072,693 – 5,072,754	+	8	64	75.72	-2.10	0.53	0.978244
6260	dm3.chr3L	5,076,414 – 5,076,511	- - - - - - - -	8605	5,076,414 – 5,076,511	-	6	113	76.81	-2.25	0.60	0.967648
6261	dm3.chr3L	5,080,299 – 5,080,407	- - - - - - - -	8606	5,080,299 – 5,080,407	-	7	112	72.34	-0.63	0.60	0.547384
6262	dm3.chr3L	5,088,731 – 5,088,820	- - - - - - - -	8607	5,088,731 – 5,088,820	+	11	91	82.36	-1.11	0.78	0.732518
6263	dm3.chr3L	5,092,631 – 5,092,728	- - - - - - - -	8608	5,092,631 – 5,092,728	+	6	103	77.73	-1.88	0.54	0.787345
6264	dm3.chr3L	5,101,775 – 5,101,879	- - - - - - - -	8609	5,101,775 – 5,101,879	+	8	132	68.45	-1.31	0.48	0.594625
6265	dm3.chr3L	5,119,497 – 5,119,606	- - - - - - - -	8610	5,119,497 – 5,119,606	+	9	125	75.59	-1.19	0.71	0.861016
6265	dm3.chr3L	5,119,497 – 5,119,606	- - - - - - - -	8611	5,119,497 – 5,119,606	-	9	125	75.59	-1.01	0.71	0.763864
6266	dm3.chr3L	5,123,496 – 5,123,627	- - - - - - - -	8612	5,123,496 – 5,123,599	+	10	113	60.88	-0.79	0.36	0.606889
6266	dm3.chr3L	5,123,496 – 5,123,627	- - - - - - - -	8613	5,123,532 – 5,123,627	-	9	116	61.27	-0.99	0.39	0.528266
6267	dm3.chr3L	5,137,545 – 5,137,647	- - CDS="CDS;ID=CDS_CG10671:4_334;Name=CG10671-cds;Parent=FBtr0077177;parent_type=mRNA" - - - - -	8614	5,137,545 – 5,137,647	+	13	118	64.21	-1.22	0.35	0.762111
6268	dm3.chr3L	5,149,131 – 5,149,202	- - - - - - - -	8615	5,149,131 – 5,149,202	+	6	72	76.09	-1.37	0.67	0.878702
6268	dm3.chr3L	5,149,131 – 5,149,202	- - - - - - - -	8616	5,149,131 – 5,149,202	-	6	72	76.09	-1.97	0.53	0.915708
6269	dm3.chr3L	5,154,832 – 5,154,927	- - - - - - - -	8617	5,154,832 – 5,154,927	-	10	110	72.34	-1.15	0.62	0.911439
6270	dm3.chr3L	5,164,074 – 5,164,182	- - - intron="intron;ID=intron_FBgn0052423:13_FBgn0052423:12;Name=shep-in;Parent=FBtr0077175,FBtr0301599;parent_type=mRNA" - - - -	8618	5,164,074 – 5,164,180	+	10	115	66.39	-1.25	0.36	0.657284
6270	dm3.chr3L	5,164,074 – 5,164,182		8619	5,164,076 – 5,164,182	+	10	115	69.40	-1.59	0.35	0.645420
6271	dm3.chr3L	5,170,801 – 5,170,893	- - - intron="intron;ID=intron_FBgn0052423:13_FBgn0052423:12;Name=shep-in;Parent=FBtr0077175,FBtr0301599;parent_type=mRNA" - - - -	8620	5,170,801 – 5,170,893	-	6	109	67.62	-1.50	0.42	0.747916
6272	dm3.chr3L	5,182,517 – 5,182,624	- - - - - - - -	8621	5,182,517 – 5,182,624	+	5	107	95.70	-2.35	0.95	0.979795
6273	dm3.chr3L	5,183,187 – 5,183,287	- - - - - - - -	8622	5,183,187 – 5,183,287	+	9	117	71.06	-1.49	0.40	0.534483
6273	dm3.chr3L	5,183,187 – 5,183,287	- - - - - - - -	8623	5,183,187 – 5,183,287	-	9	117	71.06	-1.68	0.40	0.710458
6274	dm3.chr3L	5,191,872 – 5,191,936	- - - - - - - -	8624	5,191,872 – 5,191,936	-	4	73	83.45	-0.87	0.90	0.535801
6275	dm3.chr3L	5,191,965 – 5,192,025	- - - - - - - -	8625	5,191,965 – 5,192,025	+	8	77	79.24	-2.05	0.49	0.500000
6276	dm3.chr3L	5,196,854 – 5,196,971	- - - - - - - -	8626	5,196,854 – 5,196,971	+	5	120	76.46	-3.12	0.49	0.993260
6277	dm3.chr3L	5,211,692 – 5,211,797	- - - - - - - -	8627	5,211,692 – 5,211,797	+	11	117	79.17	-1.97	0.52	0.777072
				8628	5,211,692 – 5,211,797	-	11	117	79.17	-2.71	0.35	0.741734
				8629	5,211,693 – 5,211,797	+	11	116	79.43	-2.24	0.52	0.899297
				8630	5,211,693 – 5,211,797	-	11	116	79.43	-2.78	0.35	0.776770
6278	dm3.chr3L	5,225,384 – 5,225,477	- - - intron="intron;ID=intron_FBgn0052423:15_FBgn0052423:14;Name=shep-in;Parent=FBtr0077174;parent_type=mRNA" - - - -	8631	5,225,384 – 5,225,477	+	11	108	77.22	-1.13	0.65	0.640572
6279	dm3.chr3L	5,225,945 – 5,226,047	- - - intron="intron;ID=intron_FBgn0052423:15_FBgn0052423:14;Name=shep-in;Parent=FBtr0077174;parent_type=mRNA" - - - -	8632	5,225,945 – 5,226,047	-	11	113	81.35	-2.17	0.68	0.973702
6280	dm3.chr3L	5,235,845 – 5,235,979	- - - - - - - -	8633	5,235,845 – 5,235,979	-	6	140	75.55	-1.79	0.54	0.869969
6281	dm3.chr3L	5,242,909 – 5,243,027	- - - - - - - -	8634	5,242,909 – 5,243,027	+	5	118	95.76	-1.60	0.95	0.860200
6281	dm3.chr3L	5,242,909 – 5,243,027	- - - - - - - -	8635	5,242,909 – 5,243,027	-	5	118	95.76	-1.53	0.91	0.672618
6282	dm3.chr3L	5,243,962 – 5,244,071	- - - - - - - -	8636	5,243,962 – 5,244,071	+	6	110	73.66	-0.84	0.59	0.500000
6283	dm3.chr3L	5,250,491 – 5,250,594	- - - - - - - -	8637	5,250,491 – 5,250,594	+	11	114	86.58	-1.86	0.68	0.625957
6284	dm3.chr3L	5,260,039 – 5,260,132	- - - - - - - -	8638	5,260,039 – 5,260,132	+	6	94	70.96	-1.34	0.47	0.660463
6285	dm3.chr3L	5,260,521 – 5,260,596	- - - - - - - -	8639	5,260,521 – 5,260,596	-	5	75	88.40	-3.32	0.80	0.995621
6286	dm3.chr3L	5,261,645 – 5,261,738	- - - - - - - -	8640	5,261,645 – 5,261,738	-	11	115	78.49	-1.79	0.50	0.648630
6287	dm3.chr3L	5,313,339 – 5,313,436	- - - - - - - -	8641	5,313,339 – 5,313,436	+	8	115	64.61	-0.85	0.55	0.854072
6288	dm3.chr3L	5,324,380 – 5,324,449	- - - - - - - -	8642	5,324,380 – 5,324,449	+	8	72	63.77	-1.84	0.29	0.842520
6289	dm3.chr3L	5,335,175 – 5,335,274	FBnoncoding="tRNA;ID=FBtr0077142;Name=tRNA:S7:64D-RA;Parent=FBgn0011986;Dbxref=FlyBase_Annotation_IDs:CR32419-RA;score_text=Weakly" tRNAscann="Ser_chr3L_trna19" - - "Rfam_10.0=RF00005;tRNA;BABH01061698.1/19-99\|2.9e-35" - - -	8643	5,335,175 – 5,335,274	+	13	100	89.20	-1.23	0.98	0.918830
6289	dm3.chr3L	5,335,175 – 5,335,274		8644	5,335,175 – 5,335,274	-	13	100	89.20	-1.48	0.90	0.888422
6290	dm3.chr3L	5,339,361 – 5,339,490	- - - - - - - -	8645	5,339,361 – 5,339,461	+	8	104	76.30	-1.75	0.47	0.804724
				8646	5,339,361 – 5,339,461	-	8	104	76.30	-1.03	0.74	0.897800
				8647	5,339,387 – 5,339,490	-	8	103	76.72	-0.99	0.68	0.787605
6291	dm3.chr3L	5,342,824 – 5,342,966	- - - intron="intron;ID=intron_CG10645:8_CG10645:2;Name=lama-in;Parent=FBtr0077161;parent_type=mRNA" - - - -	8648	5,342,824 – 5,342,966	+	7	157	66.80	-1.92	0.30	0.735532
6292	dm3.chr3L	5,344,503 – 5,344,554	- - - - - - - -	8649	5,344,503 – 5,344,554	+	6	58	77.88	-1.24	0.78	0.826492
6293	dm3.chr3L	5,344,730 – 5,344,827	- - - - - - - -	8650	5,344,730 – 5,344,827	+	6	111	76.26	-2.98	0.50	0.992238
6293	dm3.chr3L	5,344,730 – 5,344,827	- - - - - - - -	8651	5,344,730 – 5,344,827	-	6	111	76.26	-2.35	0.69	0.992316
6294	dm3.chr3L	5,349,426 – 5,349,533	FBnoncoding="tRNA;ID=FBtr0077143;Name=tRNA:CR32420-RA;Parent=FBgn0052420;Alias=CR32420-RA;Dbxref=FlyBase_Annotation_IDs:CR32420-RA;score_text=Weakly" tRNAscann="Val_chr3L_trna20" - - "Rfam_10.0=RF00005;tRNA;AAPU01011572.1/112057-112129\|3.0e-32" - - -	8652	5,349,426 – 5,349,533	+	13	115	83.43	-1.43	0.86	0.933982
6294	dm3.chr3L	5,349,426 – 5,349,533		8653	5,349,426 – 5,349,533	-	13	115	83.43	-2.48	0.90	0.995863
6295	dm3.chr3L	5,349,761 – 5,349,839	FBnoncoding="tRNA;ID=FBtr0077158;Name=tRNA:CR32421-RA;Parent=FBgn0052421;Alias=CR32421-RA;Dbxref=FlyBase_Annotation_IDs:CR32421-RA;score_text=Weakly" tRNAscann="Val_chr3L_trna46" - - "Rfam_10.0=RF00005;tRNA;AAPU01011572.1/112057-112129\|2.1e-32" - - -	8654	5,349,761 – 5,349,839	+	13	78	95.51	-2.93	1.00	0.997292
6295	dm3.chr3L	5,349,761 – 5,349,839		8655	5,349,761 – 5,349,839	-	13	78	95.51	-2.12	1.01	0.989358
6296	dm3.chr3L	5,354,575 – 5,354,737	- - CDS="CDS;ID=CDS_FBgn0035600:4_315;Name=CG4769-cds;Parent=FBtr0077144;parent_type=mRNA" - - - - -	8656	5,354,575 – 5,354,737	-	15	170	74.74	-0.92	0.53	0.688157
6297	dm3.chr3L	5,379,994 – 5,380,091	- - - - - - - -	8657	5,379,994 – 5,380,091	-	12	100	91.84	-2.57	0.71	0.889050
6298	dm3.chr3L	5,389,118 – 5,389,208	- - - - - - - -	8658	5,389,118 – 5,389,208	+	8	98	74.39	-1.37	0.61	0.902400
6299	dm3.chr3L	5,396,232 – 5,396,328	- - - - - - - -	8659	5,396,232 – 5,396,328	-	7	101	86.86	-1.73	0.74	0.698046
6300	dm3.chr3L	5,398,371 – 5,398,467	- - - - - - - -	8660	5,398,371 – 5,398,467	+	12	115	79.26	-1.31	0.61	0.566438
6301	dm3.chr3L	5,399,589 – 5,399,697	- - - - - - - -	8661	5,399,589 – 5,399,697	-	9	120	76.27	-1.19	0.78	0.941561
6302	dm3.chr3L	5,404,023 – 5,404,138	- - - - - - - -	8662	5,404,023 – 5,404,115	+	12	111	87.15	-1.74	0.74	0.672490
				8663	5,404,023 – 5,404,115	-	12	111	87.15	-1.93	0.83	0.930662
				8664	5,404,045 – 5,404,138	+	12	117	90.54	-1.68	0.78	0.529513
				8665	5,404,045 – 5,404,138	-	12	117	90.54	-2.01	0.75	0.697274
6303	dm3.chr3L	5,407,710 – 5,407,803	- - - - - - - -	8666	5,407,710 – 5,407,803	+	7	101	69.71	-1.66	0.55	0.974479
6304	dm3.chr3L	5,412,921 – 5,413,014	- - - - - - - -	8667	5,412,921 – 5,413,014	-	11	111	79.03	-1.67	0.68	0.879930
6305	dm3.chr3L	5,414,959 – 5,415,162	- - - - - - - -	8668	5,414,959 – 5,415,063	+	11	121	67.83	-1.54	0.38	0.851423
				8669	5,415,035 – 5,415,132	+	11	112	62.34	-1.60	0.58	0.998945
				8670	5,415,063 – 5,415,162	+	12	115	69.08	-0.93	0.45	0.552837
6306	dm3.chr3L	5,423,790 – 5,423,845	- - - - - - - -	8671	5,423,790 – 5,423,845	-	5	61	83.10	-1.70	0.68	0.586135
6307	dm3.chr3L	5,427,730 – 5,427,827	- - - intron="intron;ID=intron_FBgn0085420:4_FBgn0085420:5;Name=CG34391-in;Parent=FBtr0112634;parent_type=mRNA" - - - -	8672	5,427,730 – 5,427,827	+	11	109	71.41	-0.49	0.76	0.872187
6308	dm3.chr3L	5,428,646 – 5,428,777	- - CDS="CDS;ID=CDS_FBgn0085420:5_375;Name=CG34391-cds;Parent=FBtr0112634;parent_type=mRNA" - - - - -	8673	5,428,646 – 5,428,777	+	11	143	75.01	-1.33	0.76	0.974364
6308	dm3.chr3L	5,428,646 – 5,428,777		8674	5,428,646 – 5,428,777	-	11	143	75.01	-1.30	0.48	0.580353
6309	dm3.chr3L	5,433,865 – 5,433,962	- - - - - - - -	8675	5,433,865 – 5,433,962	+	5	98	79.47	-1.97	0.64	0.903186
6309	dm3.chr3L	5,433,865 – 5,433,962	- - - - - - - -	8676	5,433,865 – 5,433,962	-	5	98	79.47	-1.95	0.65	0.907427
6310	dm3.chr3L	5,445,685 – 5,445,735	- - - - - - - -	8677	5,445,685 – 5,445,735	-	8	56	61.36	-1.60	0.37	0.949999
6311	dm3.chr3L	5,445,766 – 5,445,856	- - - - - - - -	8678	5,445,766 – 5,445,856	+	7	98	71.02	-1.42	0.47	0.749644
6312	dm3.chr3L	5,462,893 – 5,462,944	- - - - - - - -	8679	5,462,893 – 5,462,944	-	6	56	72.91	-1.87	0.50	0.906666
6313	dm3.chr3L	5,468,182 – 5,468,239	- - - - - - - -	8680	5,468,182 – 5,468,239	+	6	57	61.64	-0.89	0.44	0.848554
6314	dm3.chr3L	5,470,862 – 5,470,922	- - - - - - - -	8681	5,470,862 – 5,470,922	-	5	60	90.33	-2.03	0.88	0.939474
6315	dm3.chr3L	5,471,508 – 5,471,655	- - - - - - - -	8682	5,471,508 – 5,471,598	-	11	92	86.76	-2.16	0.62	0.721857
6315	dm3.chr3L	5,471,508 – 5,471,655	- - - - - - - -	8683	5,471,558 – 5,471,655	-	12	107	74.13	-1.23	0.70	0.976997
6316	dm3.chr3L	5,498,077 – 5,498,163	- - CDS="CDS;ID=CDS_FBgn0085371:3_389;Name=CG34342-cds;Parent=FBtr0300031;parent_type=mRNA" - - - - -	8684	5,498,077 – 5,498,163	+	13	86	93.25	-1.23	0.88	0.512213
6317	dm3.chr3L	5,501,957 – 5,502,090	- - - intron="intron;ID=intron_FBgn0085371:9_FBgn0085371:8;Name=CG34342-in;Parent=FBtr0300031,FBtr0301080;parent_type=mRNA" - - - -	8685	5,501,957 – 5,502,051	+	6	100	68.46	-1.66	0.73	0.995964
				8686	5,501,957 – 5,502,051	-	6	100	68.46	-0.75	0.57	0.744921
				8687	5,501,984 – 5,502,090	+	7	110	70.16	-1.20	0.52	0.882718
6318	dm3.chr3L	5,514,983 – 5,515,075	- - - intron="intron;ID=intron_CG10626:1_CG10626:2;Name=Lkr-in;Parent=FBtr0077149;parent_type=mRNA" - - - -	8688	5,514,983 – 5,515,075	+	5	94	84.27	-1.69	0.72	0.651400
6319	dm3.chr3L	5,518,351 – 5,518,507	- - - intron="intron;ID=intron_CG10626:1_CG10626:2;Name=Lkr-in;Parent=FBtr0077149;parent_type=mRNA" - - - -	8689	5,518,351 – 5,518,453	-	5	112	71.42	-1.85	0.43	0.735651
				8690	5,518,388 – 5,518,486	-	5	100	65.05	-1.82	0.38	0.889364
				8691	5,518,415 – 5,518,507	+	5	92	65.17	-1.34	0.41	0.758935
6320	dm3.chr3L	5,520,730 – 5,520,845	- - - intron="intron;ID=intron_CG10626:1_CG10626:2;Name=Lkr-in;Parent=FBtr0077149;parent_type=mRNA" - - - -	8692	5,520,730 – 5,520,845	+	4	116	81.38	-2.07	0.59	0.621107
6321	dm3.chr3L	5,530,238 – 5,530,332	- - - - - - - -	8693	5,530,238 – 5,530,332	-	6	112	72.18	-1.75	0.42	0.751892
6322	dm3.chr3L	5,536,590 – 5,536,700	- - - intron="intron;ID=intron_FBgn0035612:15_FBgn0035612:14;Name=CG10625-in;Parent=FBtr0077139,FBtr0077140,FBtr0113144,FBtr0273231;parent_type=mRNA" - - - -	8694	5,536,590 – 5,536,700	+	5	113	79.00	-3.08	0.43	0.950968
6322	dm3.chr3L	5,536,590 – 5,536,700		8695	5,536,590 – 5,536,700	-	5	113	79.00	-4.60	0.62	0.999734
6323	dm3.chr3L	5,538,099 – 5,538,210	- - CDS="CDS;ID=CDS_FBgn0035612:17_345;Name=CG10625-cds;Parent=FBtr0077137,FBtr0077138,FBtr0077139,FBtr0077140,FBtr0113144,FBtr0273231,FBtr0273232,FBtr0273233;parent_type=mRNA" - - - - -	8696	5,538,099 – 5,538,210	+	12	120	82.26	-1.77	0.57	0.587954
6324	dm3.chr3L	5,555,259 – 5,555,402	- - CDS="CDS;ID=CDS_FBgn0029118:1_381;Name=Sucb-cds;Parent=FBtr0077134;parent_type=mRNA" - - - - -	8697	5,555,259 – 5,555,402	-	14	143	82.58	-1.83	0.62	0.882930
6325	dm3.chr3L	5,576,732 – 5,576,837	- - - - - - - -	8698	5,576,732 – 5,576,837	+	6	109	74.37	-2.24	0.48	0.955307
6325	dm3.chr3L	5,576,732 – 5,576,837	- - - - - - - -	8699	5,576,732 – 5,576,837	-	6	109	74.37	-2.69	0.60	0.997531
6326	dm3.chr3L	5,597,789 – 5,597,874	- - - - - - - -	8700	5,597,789 – 5,597,874	+	3	86	75.19	-3.24	0.45	0.973779
6327	dm3.chr3L	5,613,581 – 5,613,690	- - - - - - - -	8701	5,613,581 – 5,613,690	+	6	116	71.86	-1.65	0.50	0.884700
6327	dm3.chr3L	5,613,581 – 5,613,690	- - - - - - - -	8702	5,613,581 – 5,613,690	-	6	116	71.86	-1.48	0.54	0.883736
6328	dm3.chr3L	5,614,253 – 5,614,355	- - - - - - - -	8703	5,614,253 – 5,614,355	+	7	102	78.49	-1.40	0.58	0.506971
6329	dm3.chr3L	5,677,181 – 5,677,290	- - - intron="intron;ID=intron_FBgn0085447:13_FBgn0085447:18;Name=sif-in;Parent=FBtr0112708,FBtr0112712;parent_type=mRNA" - - - -	8704	5,677,181 – 5,677,290	+	5	110	90.47	-1.24	0.95	0.796173
6330	dm3.chr3L	5,679,710 – 5,679,823	- - - intron="intron;ID=intron_FBgn0085447:13_FBgn0085447:18;Name=sif-in;Parent=FBtr0112708,FBtr0112712;parent_type=mRNA" - - - -	8705	5,679,710 – 5,679,823	-	6	115	75.64	-0.96	0.65	0.573892
6331	dm3.chr3L	5,701,524 – 5,701,658	- - - intron="intron;ID=intron_FBgn0085447:20_FBgn0085447:21;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112711,FBtr0112712,FBtr0112713,FBtr0112714;parent_type=mRNA" - - - -	8706	5,701,524 – 5,701,658	+	6	152	70.98	-1.99	0.50	0.960924
6331	dm3.chr3L	5,701,524 – 5,701,658		8707	5,701,524 – 5,701,658	-	6	152	70.98	-2.13	0.52	0.982134
6332	dm3.chr3L	5,703,142 – 5,703,234	- - - intron="intron;ID=intron_FBgn0085447:20_FBgn0085447:21;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112711,FBtr0112712,FBtr0112713,FBtr0112714;parent_type=mRNA" - - - -	8708	5,703,142 – 5,703,234	+	6	104	73.68	-1.51	0.51	0.688185
6333	dm3.chr3L	5,705,204 – 5,705,308	- - - intron="intron;ID=intron_FBgn0085447:20_FBgn0085447:21;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112711,FBtr0112712,FBtr0112713,FBtr0112714;parent_type=mRNA" - - - -	8709	5,705,204 – 5,705,308	+	7	114	76.13	-1.56	0.59	0.796354
6334	dm3.chr3L	5,713,697 – 5,713,790	- - - intron="intron;ID=intron_FBgn0085447:22_FBgn0085447:23;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112711,FBtr0112712,FBtr0112713,FBtr0112714;parent_type=mRNA" - - - -	8710	5,713,697 – 5,713,790	-	7	112	72.09	-1.07	0.63	0.644939
6335	dm3.chr3L	5,714,680 – 5,714,791	- - - intron="intron;ID=intron_FBgn0085447:23_FBgn0085447:24;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112711,FBtr0112712,FBtr0112713,FBtr0112714;parent_type=mRNA" - - - -	8711	5,714,680 – 5,714,791	+	7	114	52.09	-3.40	-0.00	0.938655
6335	dm3.chr3L	5,714,680 – 5,714,791		8712	5,714,680 – 5,714,791	-	7	114	52.09	-3.66	-0.00	0.974139
6336	dm3.chr3L	5,715,667 – 5,715,721	- - - intron="intron;ID=intron_FBgn0085447:24_FBgn0085447:25;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112711,FBtr0112712,FBtr0112713,FBtr0112714;parent_type=mRNA" - - - -	8713	5,715,667 – 5,715,721	+	4	54	99.07	-1.17	1.01	0.809145
6337	dm3.chr3L	5,716,523 – 5,716,616	- - - intron="intron;ID=intron_FBgn0085447:24_FBgn0085447:25;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112711,FBtr0112712,FBtr0112713,FBtr0112714;parent_type=mRNA" - - - -	8714	5,716,523 – 5,716,616	-	10	95	72.64	-1.89	0.40	0.928541
6338	dm3.chr3L	5,730,566 – 5,730,658	- - - intron="intron;ID=intron_FBgn0085447:31_FBgn0085447:32;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112711,FBtr0112712,FBtr0112713,FBtr0112714;parent_type=mRNA" - - - -	8715	5,730,566 – 5,730,658	-	9	98	78.08	-2.82	0.70	0.998033
6339	dm3.chr3L	5,733,492 – 5,733,611	- - - intron="intron;ID=intron_FBgn0085447:38_FBgn0085447:42;Name=sif-in;Parent=FBtr0112708,FBtr0112709,FBtr0112710,FBtr0112713;parent_type=mRNA" - - - -	8716	5,733,492 – 5,733,611	+	8	119	87.48	-2.27	0.71	0.908736
6340	dm3.chr3L	5,735,091 – 5,735,196	- - - intron="intron;ID=intron_FBgn0085447:39_FBgn0085447:41;Name=sif-in;Parent=FBtr0112711;parent_type=mRNA" - - - -	8717	5,735,091 – 5,735,196	+	13	120	85.84	-2.25	0.71	0.943331
6340	dm3.chr3L	5,735,091 – 5,735,196		8718	5,735,091 – 5,735,196	-	13	120	85.84	-2.01	0.78	0.942760
6341	dm3.chr3L	5,756,483 – 5,756,575	- - - intron="intron;ID=intron_FBgn0035630:4_FBgn0035630:3;Name=CG10576-in;Parent=FBtr0077121;parent_type=mRNA" - "Noncode_2.0=n3509_u3137_AJ544007_snoRNA_Drosophila\|2.0e-14" "unique_Noncode_2.0=u3137_snoRNA_Drosophila\|1.7e-14" -	8719	5,756,483 – 5,756,575	-	10	100	62.49	-1.42	0.69	0.998406
6342	dm3.chr3L	5,757,109 – 5,757,183	FBnoncoding="snoRNA;ID=FBtr0113607;Name=snoRNA:Psi28S-1837c-RA;Parent=FBgn0082994;Dbxref=FlyBase_Annotation_IDs:CR34638-RA,REFSEQ:NR_003859;score_text=Weakly" - - intron="intron;ID=intron_FBgn0035630:5_FBgn0035630:4;Name=CG10576-in;Parent=FBtr0077121;parent_type=mRNA" - - - -	8720	5,757,109 – 5,757,183	-	11	88	71.65	-0.79	0.59	0.679115
6343	dm3.chr3L	5,757,422 – 5,757,499	FBnoncoding="snoRNA;ID=FBtr0091629;Name=snoRNA:Psi28S-1837a-RA;Parent=FBgn0086660;Alias=snoRNA:14-RA;Dbxref=FlyBase_Annotation_IDs:CR33652-RA,REFSEQ:NR_002477;score_text=Weakly" - - intron="intron;ID=intron_FBgn0035630:5_FBgn0035630:4;Name=CG10576-in;Parent=FBtr0077121;parent_type=mRNA" - "Noncode_2.0=n3511_u3139_AJ544009_snoRNA_Drosophila\|6.6e-17" "unique_Noncode_2.0=u3139_snoRNA_Drosophila\|5.7e-17" -	8721	5,757,422 – 5,757,499	+	10	78	70.66	-0.80	0.48	0.594713
6343	dm3.chr3L	5,757,422 – 5,757,499		8722	5,757,422 – 5,757,499	-	10	78	70.66	-0.87	0.47	0.615008
6344	dm3.chr3L	5,757,651 – 5,757,748	- - - intron="intron;ID=intron_FBgn0035630:6_FBgn0035630:5;Name=CG10576-in;Parent=FBtr0077121;parent_type=mRNA" - - - -	8723	5,757,651 – 5,757,746	-	12	100	62.86	-0.76	0.38	0.639218
6344	dm3.chr3L	5,757,651 – 5,757,748		8724	5,757,653 – 5,757,748	-	11	100	64.18	-0.51	0.44	0.604871
6345	dm3.chr3L	5,763,142 – 5,763,265	- - - intron="intron;ID=intron_CG5505:1_CG5505:2;Name=scny-in;Parent=FBtr0077099,FBtr0077100;parent_type=mRNA" - - - -	8725	5,763,142 – 5,763,232	-	3	98	73.29	-1.42	0.64	0.514338
6345	dm3.chr3L	5,763,142 – 5,763,265		8726	5,763,172 – 5,763,265	-	3	96	68.20	-2.25	0.46	0.856095
6346	dm3.chr3L	5,765,213 – 5,765,359	- - CDS="CDS;ID=CDS_CG5505:2_275;Name=scny-cds;Parent=FBtr0077099,FBtr0077100,FBtr0077103,FBtr0077104;parent_type=mRNA" - - - - -	8727	5,765,213 – 5,765,332	+	15	119	73.80	-1.40	0.37	0.530113
6346	dm3.chr3L	5,765,213 – 5,765,359		8728	5,765,253 – 5,765,359	+	15	120	75.22	-1.43	0.46	0.553438
6347	dm3.chr3L	5,767,820 – 5,767,914	- - - intron="intron;ID=intron_CG5505:4_CG5505:5;Name=scny-in;Parent=FBtr0077099,FBtr0077102,FBtr0077104;parent_type=mRNA" - - - -	8729	5,767,820 – 5,767,914	+	10	97	60.15	-1.76	0.30	0.918602
6348	dm3.chr3L	5,768,975 – 5,769,087	- - - - - - - -	8730	5,768,975 – 5,769,087	+	5	116	85.45	-2.38	0.64	0.836747
6348	dm3.chr3L	5,768,975 – 5,769,087	- - - - - - - -	8731	5,768,975 – 5,769,087	-	5	116	85.45	-3.01	0.65	0.979117
6349	dm3.chr3L	5,783,311 – 5,783,412	- - - - - - - -	8732	5,783,311 – 5,783,412	+	8	107	91.28	-2.83	0.65	0.883937
6350	dm3.chr3L	5,827,919 – 5,828,020	- - - intron="intron;ID=intron_FBgn0003984:8_FBgn0003984:7;Name=vn-in;Parent=FBtr0077082,FBtr0300010;parent_type=mRNA" - - - -	8733	5,827,919 – 5,828,020	-	7	101	80.41	-1.73	0.56	0.666406
6351	dm3.chr3L	5,828,677 – 5,828,774	- - - intron="intron;ID=intron_FBgn0003984:8_FBgn0003984:7;Name=vn-in;Parent=FBtr0077082,FBtr0300010;parent_type=mRNA" - - - -	8734	5,828,677 – 5,828,774	-	4	97	92.27	-1.58	0.94	0.882506
6352	dm3.chr3L	5,836,550 – 5,836,664	- - CDS="CDS;ID=CDS_FBgn0003984:8_344;Name=vn-cds;Parent=FBtr0300010;parent_type=mRNA" - - - - -	8735	5,836,550 – 5,836,664	+	11	123	76.43	-1.46	0.54	0.780878
6352	dm3.chr3L	5,836,550 – 5,836,664		8736	5,836,550 – 5,836,664	-	11	123	76.43	-1.65	0.60	0.940758
6353	dm3.chr3L	5,837,851 – 5,837,947	- - - - - - - -	8737	5,837,851 – 5,837,947	+	6	102	85.99	-2.51	0.68	0.940077
6354	dm3.chr3L	5,838,691 – 5,838,998	- - - - - - - -	8738	5,838,691 – 5,838,810	+	5	120	96.06	-2.34	0.87	0.921321
				8739	5,838,730 – 5,838,850	+	5	120	96.42	-2.11	0.91	0.921041
				8740	5,838,850 – 5,838,958	+	5	120	92.02	-1.27	0.96	0.812005
				8741	5,838,890 – 5,838,998	+	5	117	90.86	-1.65	0.82	0.568047
				8742	5,838,890 – 5,838,998	-	5	117	90.86	-1.76	0.82	0.657707
6355	dm3.chr3L	5,840,196 – 5,840,288	- - - - - - - -	8743	5,840,196 – 5,840,288	-	5	95	83.55	-1.29	1.00	0.946262
6356	dm3.chr3L	5,851,398 – 5,851,493	- - - - - - - -	8744	5,851,398 – 5,851,493	+	11	103	83.23	-1.45	0.72	0.684547
6356	dm3.chr3L	5,851,398 – 5,851,493	- - - - - - - -	8745	5,851,398 – 5,851,493	-	11	103	83.23	-1.57	0.67	0.635451
6357	dm3.chr3L	5,859,996 – 5,860,049	- - - - - - - -	8746	5,859,996 – 5,860,049	-	9	55	68.35	-0.87	0.50	0.841384
6358	dm3.chr3L	5,869,399 – 5,869,533	- - - - - - - -	8747	5,869,399 – 5,869,503	+	7	108	70.96	-2.02	0.47	0.967050
6358	dm3.chr3L	5,869,399 – 5,869,533	- - - - - - - -	8748	5,869,426 – 5,869,533	+	8	113	70.89	-2.31	0.42	0.970644
6359	dm3.chr3L	5,875,284 – 5,875,334	- - - - - - - -	8749	5,875,284 – 5,875,334	-	6	50	88.67	-2.33	0.74	0.909133
6360	dm3.chr3L	5,909,517 – 5,909,646	- - - intron="intron;ID=intron_FBgn0035648:6_FBgn0035648:7;Name=CG13288-in;Parent=FBtr0113148;parent_type=mRNA" - - - -	8750	5,909,517 – 5,909,620	-	6	109	73.14	-2.11	0.47	0.942526
6360	dm3.chr3L	5,909,517 – 5,909,646		8751	5,909,547 – 5,909,646	-	6	110	73.44	-2.90	0.48	0.994499
6361	dm3.chr3L	5,948,387 – 5,948,456	- - - - - - - -	8752	5,948,387 – 5,948,456	+	11	74	91.74	-1.51	0.87	0.708498
6362	dm3.chr3L	5,956,211 – 5,956,315	- - - - - - - -	8753	5,956,211 – 5,956,315	+	8	106	73.31	-0.73	0.56	0.500000
6363	dm3.chr3L	5,962,640 – 5,962,693	- - - intron="intron;ID=intron_CG10479:1_CG10479:2;Name=CG10479-in;Parent=FBtr0077070;parent_type=mRNA" - - - -	8754	5,962,640 – 5,962,693	-	7	62	69.39	-2.25	0.36	0.832338
6364	dm3.chr3L	5,987,755 – 5,987,846	- - - - - - - -	8755	5,987,755 – 5,987,846	+	12	111	79.70	-3.50	0.40	0.988290
6365	dm3.chr3L	5,993,088 – 5,993,223	- - - intron="intron;ID=intron_CG32406:1_CG32406:2;Name=CG32406-in;Parent=FBtr0077037;parent_type=mRNA" - - - -	8756	5,993,088 – 5,993,191	+	8	118	70.55	-1.38	0.45	0.652389
6365	dm3.chr3L	5,993,088 – 5,993,223		8757	5,993,126 – 5,993,223	+	8	111	72.78	-1.03	0.60	0.771953
6366	dm3.chr3L	6,004,344 – 6,004,435	- - - - - - - -	8758	6,004,344 – 6,004,435	+	6	92	74.37	-1.64	0.66	0.971086
6366	dm3.chr3L	6,004,344 – 6,004,435	- - - - - - - -	8759	6,004,344 – 6,004,435	-	6	92	74.37	-1.25	0.55	0.679719
6367	dm3.chr3L	6,016,501 – 6,016,588	- - - intron="intron;ID=intron_CG32406:4_CG32406:5;Name=CG32406-in;Parent=FBtr0077037;parent_type=mRNA" - - - -	8760	6,016,501 – 6,016,588	-	12	107	70.64	-1.75	0.40	0.802252
6368	dm3.chr3L	6,021,832 – 6,021,928	- - - - - - - -	8761	6,021,832 – 6,021,928	+	10	114	75.67	-2.41	0.42	0.934442
6368	dm3.chr3L	6,021,832 – 6,021,928	- - - - - - - -	8762	6,021,832 – 6,021,928	-	10	114	75.67	-2.37	0.41	0.910830
6369	dm3.chr3L	6,027,418 – 6,027,509	- - - - - - - -	8763	6,027,418 – 6,027,509	-	10	98	60.80	-0.09	0.50	0.516834
6370	dm3.chr3L	6,040,883 – 6,041,009	- - - - - - - -	8764	6,040,883 – 6,040,976	+	6	93	92.76	-2.33	0.90	0.970232
				8765	6,040,883 – 6,040,976	-	6	93	92.76	-2.05	0.88	0.916817
				8766	6,040,914 – 6,041,009	+	6	100	86.34	-2.34	0.70	0.906668
				8767	6,040,914 – 6,041,009	-	6	100	86.34	-2.01	0.75	0.856902
6371	dm3.chr3L	6,043,378 – 6,043,471	- - - - - - - -	8768	6,043,378 – 6,043,471	-	6	112	67.32	-2.61	0.25	0.730389
6372	dm3.chr3L	6,060,097 – 6,060,196	- - - intron="intron;ID=intron_FBgn0259164:1_FBgn0259164:3;Name=CG42269-in;Parent=FBtr0299609;parent_type=mRNA" - - - -	8769	6,060,097 – 6,060,196	-	7	114	71.98	-1.65	0.40	0.516187
6373	dm3.chr3L	6,070,177 – 6,070,336	- - CDS="CDS;ID=CDS_CG6619:1_307;Name=CG6619-cds;Parent=FBtr0077049;parent_type=mRNA" - - - - -	8770	6,070,177 – 6,070,271	-	12	94	80.69	-1.58	0.60	0.841683
6373	dm3.chr3L	6,070,177 – 6,070,336		8771	6,070,231 – 6,070,336	-	7	110	63.10	-1.10	0.38	0.607235
6374	dm3.chr3L	6,078,516 – 6,078,658	- - - - - - - -	8772	6,078,516 – 6,078,658	-	5	145	70.80	-1.35	0.56	0.866554
6375	dm3.chr3L	6,087,614 – 6,087,714	- - - - - - - -	8773	6,087,614 – 6,087,714	-	8	113	70.16	-2.61	0.20	0.512930
6376	dm3.chr3L	6,100,821 – 6,100,913	- - - intron="intron;ID=intron_FBgn0005658:5_FBgn0005658:7;Name=Ets65A-in;Parent=FBtr0077054,FBtr0273355;parent_type=mRNA" - - - -	8774	6,100,821 – 6,100,913	+	9	104	70.94	-1.67	0.41	0.732232
6377	dm3.chr3L	6,103,442 – 6,103,538	- - - intron="intron;ID=intron_FBgn0005658:5_FBgn0005658:7;Name=Ets65A-in;Parent=FBtr0077054,FBtr0273355;parent_type=mRNA" - - - -	8775	6,103,442 – 6,103,538	-	8	99	76.71	-0.76	0.84	0.768250
6378	dm3.chr3L	6,108,027 – 6,108,129	- - - intron="intron;ID=intron_FBgn0005658:8_FBgn0005658:9;Name=Ets65A-in;Parent=FBtr0077054,FBtr0077055,FBtr0273355;parent_type=mRNA" - - - -	8776	6,108,027 – 6,108,129	-	10	116	67.22	-1.44	0.49	0.955911
6379	dm3.chr3L	6,108,775 – 6,108,872	- - - intron="intron;ID=intron_FBgn0005658:8_FBgn0005658:9;Name=Ets65A-in;Parent=FBtr0077054,FBtr0077055,FBtr0273355;parent_type=mRNA" - - - -	8777	6,108,775 – 6,108,872	+	5	111	78.30	-1.86	0.58	0.685482
6380	dm3.chr3L	6,110,007 – 6,110,102	- - - intron="intron;ID=intron_FBgn0005658:9_FBgn0005658:10;Name=Ets65A-in;Parent=FBtr0077054,FBtr0077055,FBtr0273355;parent_type=mRNA" - - - -	8778	6,110,007 – 6,110,102	+	12	104	60.36	-2.18	0.15	0.718479
6381	dm3.chr3L	6,131,863 – 6,132,034	- - - - - - - -	8779	6,131,863 – 6,131,922	+	8	59	95.28	-2.09	0.91	0.931172
				8780	6,131,863 – 6,131,922	-	8	59	95.28	-2.77	0.77	0.911144
				8781	6,131,922 – 6,132,034	-	8	113	93.84	-2.46	0.72	0.706652
6382	dm3.chr3L	6,134,125 – 6,134,229	- - - - - - - -	8782	6,134,125 – 6,134,229	+	7	117	68.27	-1.21	0.52	0.862532
6383	dm3.chr3L	6,145,952 – 6,146,053	- - - - - - - -	8783	6,145,952 – 6,146,053	-	6	103	81.75	-1.11	0.80	0.628568
6384	dm3.chr3L	6,178,195 – 6,178,300	- - - - - - - -	8784	6,178,195 – 6,178,298	-	5	119	79.67	-2.25	0.71	0.961472
6384	dm3.chr3L	6,178,195 – 6,178,300	- - - - - - - -	8785	6,178,197 – 6,178,300	-	5	119	79.67	-2.29	0.75	0.976757
6385	dm3.chr3L	6,211,049 – 6,211,161	- - - - - - - -	8786	6,211,049 – 6,211,161	+	12	133	73.49	-1.40	0.53	0.817202
6386	dm3.chr3L	6,232,865 – 6,232,926	- - - - - - - -	8787	6,232,865 – 6,232,926	+	6	61	84.70	-1.57	0.78	0.795708
6386	dm3.chr3L	6,232,865 – 6,232,926	- - - - - - - -	8788	6,232,865 – 6,232,926	-	6	61	84.70	-2.61	0.74	0.985684
6387	dm3.chr3L	6,238,090 – 6,238,204	- - CDS="CDS;ID=CDS_CG10181:2_277;Name=Mdr65-cds;Parent=FBtr0077011;parent_type=mRNA" - - - - -	8789	6,238,090 – 6,238,204	-	14	117	72.37	-1.77	0.37	0.836519
6388	dm3.chr3L	6,257,661 – 6,257,819	- - - - - - - -	8790	6,257,661 – 6,257,779	+	5	120	79.56	-3.06	0.58	0.993324
6388	dm3.chr3L	6,257,661 – 6,257,819	- - - - - - - -	8791	6,257,700 – 6,257,819	+	5	120	78.95	-1.79	0.59	0.707029
6389	dm3.chr3L	6,262,532 – 6,262,638	- - - - - - - -	8792	6,262,532 – 6,262,638	-	6	109	82.80	-1.70	0.65	0.617548
6390	dm3.chr3L	6,266,051 – 6,266,110	- - - - - - - -	8793	6,266,051 – 6,266,110	+	5	62	61.03	-0.98	0.56	0.942432
6390	dm3.chr3L	6,266,051 – 6,266,110	- - - - - - - -	8794	6,266,051 – 6,266,110	-	5	62	61.03	-0.70	0.52	0.759476
6391	dm3.chr3L	6,278,188 – 6,278,260	- - - - - - - -	8795	6,278,188 – 6,278,260	+	7	77	61.09	-0.72	0.41	0.608524
6392	dm3.chr3L	6,312,299 – 6,312,391	- - - - - - - -	8796	6,312,299 – 6,312,391	+	11	114	87.29	-1.29	0.83	0.553743
6393	dm3.chr3L	6,316,315 – 6,316,430	- - - - - - - -	8797	6,316,315 – 6,316,430	-	7	118	70.87	-1.39	0.57	0.951241
6394	dm3.chr3L	6,318,462 – 6,318,565	- - - - - - - -	8798	6,318,462 – 6,318,565	-	4	104	70.76	-1.50	0.51	0.619091
6395	dm3.chr3L	6,334,615 – 6,334,714	- - - intron="intron;ID=intron_FBgn0035699:4_FBgn0035699:3;Name=CG13300-in;Parent=FBtr0077007;parent_type=mRNA" - - - -	8799	6,334,615 – 6,334,714	-	7	104	62.73	-1.02	0.36	0.511364
6396	dm3.chr3L	6,348,646 – 6,348,743	- - - - - - - -	8800	6,348,646 – 6,348,743	+	6	103	67.96	-1.72	0.33	0.550421
6397	dm3.chr3L	6,355,701 – 6,355,816	- - - - - - - -	8801	6,355,701 – 6,355,805	-	5	104	84.37	-2.54	0.76	0.980364
6397	dm3.chr3L	6,355,701 – 6,355,816	- - - - - - - -	8802	6,355,712 – 6,355,816	-	4	104	78.40	-2.28	0.80	0.986584
6398	dm3.chr3L	6,362,050 – 6,362,141	- - - - - - - -	8803	6,362,050 – 6,362,141	-	9	110	71.86	-1.39	0.50	0.702659
6399	dm3.chr3L	6,366,697 – 6,366,811	- - - - - - - -	8804	6,366,697 – 6,366,790	-	6	93	75.51	-0.93	0.67	0.551762
6399	dm3.chr3L	6,366,697 – 6,366,811	- - - - - - - -	8805	6,366,718 – 6,366,811	-	4	93	72.74	-1.26	0.68	0.723305
6400	dm3.chr3L	6,371,572 – 6,371,668	- - - - - - - -	8806	6,371,572 – 6,371,668	+	4	98	84.43	-1.14	0.84	0.536677
6400	dm3.chr3L	6,371,572 – 6,371,668	- - - - - - - -	8807	6,371,572 – 6,371,668	-	4	98	84.43	-1.66	0.77	0.726463
6401	dm3.chr3L	6,380,200 – 6,380,277	- - - - - - - -	8808	6,380,200 – 6,380,277	+	13	91	74.53	-0.91	0.56	0.519945
6402	dm3.chr3L	6,387,110 – 6,387,208	- - - - - - - -	8809	6,387,110 – 6,387,208	+	9	103	80.07	-1.51	0.59	0.577779
6403	dm3.chr3L	6,413,450 – 6,413,520	- - - intron="intron;ID=intron_FBgn0261801:1_FBgn0261801:2;Name=CG42747-in;Parent=FBtr0303270;parent_type=mRNA" - - - -	8810	6,413,450 – 6,413,520	-	4	70	52.62	-0.96	0.41	0.894544
6404	dm3.chr3L	6,425,630 – 6,425,727	- - - intron="intron;ID=intron_FBgn0261801:1_FBgn0261801:2;Name=CG42747-in;Parent=FBtr0303270;parent_type=mRNA" - - - -	8811	6,425,630 – 6,425,727	+	6	97	88.93	-1.57	0.86	0.806027
6405	dm3.chr3L	6,428,893 – 6,428,989	- - - intron="intron;ID=intron_FBgn0261801:1_FBgn0261801:2;Name=CG42747-in;Parent=FBtr0303270;parent_type=mRNA" - - - -	8812	6,428,893 – 6,428,989	-	4	96	72.05	-2.48	0.65	0.995297
6406	dm3.chr3L	6,437,030 – 6,437,132	- - - intron="intron;ID=intron_FBgn0261801:1_FBgn0261801:2;Name=CG42747-in;Parent=FBtr0303270;parent_type=mRNA" - - - -	8813	6,437,030 – 6,437,132	+	12	120	81.37	-2.38	0.57	0.934584
6407	dm3.chr3L	6,459,765 – 6,459,862	- - - intron="intron;ID=intron_FBgn0261801:3_FBgn0261801:4;Name=CG42747-in;Parent=FBtr0303270;parent_type=mRNA" - - - -	8814	6,459,765 – 6,459,862	+	8	106	79.35	-1.87	0.47	0.568705
6408	dm3.chr3L	6,463,617 – 6,463,709	- - - intron="intron;ID=intron_FBgn0261801:3_FBgn0261801:4;Name=CG42747-in;Parent=FBtr0303270;parent_type=mRNA" - - - -	8815	6,463,617 – 6,463,709	+	11	108	68.33	-1.22	0.45	0.823982
6409	dm3.chr3L	6,494,482 – 6,494,587	- - - intron="intron;ID=intron_FBgn0020251:1_FBgn0020251:2;Name=sfl-in;Parent=FBtr0076968;parent_type=mRNA" - - - -	8816	6,494,482 – 6,494,587	+	5	109	88.23	-1.50	0.82	0.600373
6409	dm3.chr3L	6,494,482 – 6,494,587		8817	6,494,482 – 6,494,587	-	5	109	88.23	-1.68	0.82	0.739968
6410	dm3.chr3L	6,497,524 – 6,497,619	- - - intron="intron;ID=intron_FBgn0020251:1_FBgn0020251:2;Name=sfl-in;Parent=FBtr0076968;parent_type=mRNA" - - - -	8818	6,497,524 – 6,497,619	+	6	96	75.62	-2.16	0.72	0.992419
6410	dm3.chr3L	6,497,524 – 6,497,619		8819	6,497,524 – 6,497,619	-	6	96	75.62	-2.20	0.70	0.992367
6411	dm3.chr3L	6,501,004 – 6,501,087	- - - intron="intron;ID=intron_FBgn0020251:2_FBgn0020251:3;Name=sfl-in;Parent=FBtr0076968;parent_type=mRNA" - - - -	8820	6,501,004 – 6,501,087	+	6	86	62.26	-0.82	0.48	0.649007
6411	dm3.chr3L	6,501,004 – 6,501,087		8821	6,501,004 – 6,501,087	-	6	86	62.26	-1.65	0.35	0.757854
6412	dm3.chr3L	6,501,301 – 6,501,402	- - - intron="intron;ID=intron_FBgn0020251:2_FBgn0020251:3;Name=sfl-in;Parent=FBtr0076968;parent_type=mRNA" - - - -	8822	6,501,301 – 6,501,402	-	9	117	75.95	-1.97	0.40	0.584666
6413	dm3.chr3L	6,504,042 – 6,504,153	- - - intron="intron;ID=intron_FBgn0020251:2_FBgn0020251:3;Name=sfl-in;Parent=FBtr0076968;parent_type=mRNA" - - - -	8823	6,504,042 – 6,504,139	+	7	100	79.13	-2.27	0.66	0.986951
6413	dm3.chr3L	6,504,042 – 6,504,153		8824	6,504,049 – 6,504,153	+	7	105	84.32	-1.42	0.78	0.761635
6414	dm3.chr3L	6,511,442 – 6,511,537	- - - intron="intron;ID=intron_FBgn0020251:2_FBgn0020251:3;Name=sfl-in;Parent=FBtr0076968;parent_type=mRNA" - - - -	8825	6,511,442 – 6,511,537	-	6	95	84.35	-2.02	0.69	0.867514
6415	dm3.chr3L	6,531,541 – 6,531,594	- - - intron="intron;ID=intron_FBgn0020251:4_FBgn0020251:5;Name=sfl-in;Parent=FBtr0076968,FBtr0301562;parent_type=mRNA" - - - -	8826	6,531,541 – 6,531,594	+	9	66	91.95	-3.69	0.69	0.991214
6415	dm3.chr3L	6,531,541 – 6,531,594		8827	6,531,541 – 6,531,594	-	9	66	91.95	-2.68	0.87	0.984096
6416	dm3.chr3L	6,537,182 – 6,537,274	- - - intron="intron;ID=intron_FBgn0020251:4_FBgn0020251:5;Name=sfl-in;Parent=FBtr0076968,FBtr0301562;parent_type=mRNA" - - - -	8828	6,537,182 – 6,537,274	+	6	96	74.71	-2.27	0.56	0.987060
6417	dm3.chr3L	6,541,915 – 6,542,016	- - - - - - - -	8829	6,541,915 – 6,542,016	+	7	113	77.60	-1.64	0.68	0.924238
6417	dm3.chr3L	6,541,915 – 6,542,016	- - - - - - - -	8830	6,541,915 – 6,542,016	-	7	113	77.60	-1.65	0.58	0.787346
6418	dm3.chr3L	6,543,735 – 6,543,869	- - - - - - - -	8831	6,543,735 – 6,543,831	+	6	118	68.71	-1.41	0.43	0.500000
				8832	6,543,735 – 6,543,831	-	6	118	68.71	-1.60	0.54	0.934727
				8833	6,543,753 – 6,543,869	-	6	118	76.10	-2.24	0.53	0.964978
6419	dm3.chr3L	6,564,948 – 6,565,073	- - CDS="CDS;ID=CDS_FBgn0052397:5_342;Name=CG32397-cds;Parent=FBtr0076985;parent_type=mRNA" - - - - -	8834	6,564,948 – 6,565,044	+	9	97	66.28	-0.86	0.44	0.712662
				8835	6,564,948 – 6,565,044	-	9	97	66.28	-1.39	0.50	0.982814
				8836	6,564,982 – 6,565,073	-	12	112	73.67	-1.72	0.53	0.917900
6420	dm3.chr3L	6,572,659 – 6,572,752	- - - intron="intron;ID=intron_FBgn0052397:6_FBgn0052397:5;Name=CG32397-in;Parent=FBtr0076985;parent_type=mRNA" - - - -	8837	6,572,659 – 6,572,752	+	7	99	74.52	-2.58	0.38	0.939748
6420	dm3.chr3L	6,572,659 – 6,572,752		8838	6,572,659 – 6,572,752	-	7	99	74.52	-3.23	0.49	0.998608
6421	dm3.chr3L	6,574,781 – 6,574,938	- - - intron="intron;ID=intron_FBgn0052397:6_FBgn0052397:5;Name=CG32397-in;Parent=FBtr0076985;parent_type=mRNA" - - - -	8839	6,574,781 – 6,574,901	+	4	120	56.60	-2.45	0.23	0.915498
				8840	6,574,781 – 6,574,901	-	4	120	56.60	-2.36	0.40	0.997315
				8841	6,574,821 – 6,574,938	-	4	117	73.53	-1.32	0.65	0.767484
6422	dm3.chr3L	6,587,042 – 6,587,103	- - - - - - - -	8842	6,587,042 – 6,587,103	-	12	64	75.72	-1.28	0.80	0.974144
6423	dm3.chr3L	6,618,000 – 6,618,073	- - - intron="intron;ID=intron_CG8442:1_CG8442:2;Name=Glu-RI-in;Parent=FBtr0076982;parent_type=mRNA" - - - -	8843	6,618,000 – 6,618,073	+	8	75	81.88	-1.04	0.87	0.780971
6424	dm3.chr3L	6,622,912 – 6,623,004	- - - intron="intron;ID=intron_CG8442:4_CG8442:5;Name=Glu-RI-in;Parent=FBtr0076982;parent_type=mRNA" - - - -	8844	6,622,912 – 6,623,004	-	10	96	88.17	-2.25	0.64	0.732553
6425	dm3.chr3L	6,624,705 – 6,624,757	- - - intron="intron;ID=intron_CG8442:5_CG8442:6;Name=Glu-RI-in;Parent=FBtr0076982;parent_type=mRNA" - - - -	8845	6,624,705 – 6,624,757	+	5	52	90.00	-1.80	0.90	0.916549
6425	dm3.chr3L	6,624,705 – 6,624,757		8846	6,624,705 – 6,624,757	-	5	52	90.00	-1.50	0.94	0.894897
6426	dm3.chr3L	6,641,079 – 6,641,204	- - - - - - - -	8847	6,641,079 – 6,641,129	+	4	50	86.67	-2.39	0.71	0.874325
				8848	6,641,129 – 6,641,204	+	10	87	72.04	-1.00	0.56	0.653330
				8849	6,641,129 – 6,641,204	-	10	87	72.04	-1.33	0.47	0.602983
6427	dm3.chr3L	6,646,724 – 6,646,902	- - - - - - - -	8850	6,646,724 – 6,646,822	-	8	113	67.88	-1.44	0.53	0.951754
6427	dm3.chr3L	6,646,724 – 6,646,902	- - - - - - - -	8851	6,646,782 – 6,646,902	-	8	120	88.64	-1.83	0.74	0.641676
6428	dm3.chr3L	6,655,315 – 6,655,429	- - - - - - - -	8852	6,655,315 – 6,655,429	+	12	119	90.69	-1.49	0.88	0.784180
6429	dm3.chr3L	6,659,457 – 6,659,548	- - - - - - - -	8853	6,659,457 – 6,659,548	-	8	119	83.78	-2.09	0.59	0.542886
6430	dm3.chr3L	6,661,069 – 6,661,157	- - - - - - - -	8854	6,661,069 – 6,661,157	+	6	91	76.20	-1.75	0.66	0.939505
6430	dm3.chr3L	6,661,069 – 6,661,157	- - - - - - - -	8855	6,661,069 – 6,661,157	-	6	91	76.20	-2.34	0.67	0.991591
6431	dm3.chr3L	6,666,964 – 6,667,041	- - - - - - - -	8856	6,666,964 – 6,667,041	+	5	79	87.63	-2.13	0.87	0.962886
6431	dm3.chr3L	6,666,964 – 6,667,041	- - - - - - - -	8857	6,666,964 – 6,667,041	-	5	79	87.63	-1.90	0.90	0.951761
6432	dm3.chr3L	6,672,262 – 6,672,319	- - - - - - - -	8858	6,672,262 – 6,672,319	+	4	57	83.33	-2.31	0.67	0.891733
6433	dm3.chr3L	6,680,210 – 6,680,304	- - - - - - - -	8859	6,680,210 – 6,680,304	-	9	119	73.15	-1.36	0.65	0.914708
6434	dm3.chr3L	6,683,434 – 6,683,525	- - - intron="intron;ID=intron_CG10121:6_CG10121:7;Name=SP1173-in;Parent=FBtr0076958,FBtr0076959,FBtr0076960,FBtr0076961;parent_type=mRNA" - - - -	8860	6,683,434 – 6,683,525	+	11	105	54.12	-0.60	0.42	0.877988
6435	dm3.chr3L	6,701,173 – 6,701,276	- - - intron="intron;ID=intron_FBgn0035711:1_FBgn0035711:2;Name=CG8519-in;Parent=FBtr0076942;parent_type=mRNA" - - - -	8861	6,701,173 – 6,701,276	+	8	104	65.29	-1.45	0.37	0.868293
6436	dm3.chr3L	6,704,322 – 6,704,417	- - - - - - - -	8862	6,704,322 – 6,704,417	+	4	96	94.76	-3.63	0.92	0.997460
6436	dm3.chr3L	6,704,322 – 6,704,417	- - - - - - - -	8863	6,704,322 – 6,704,417	-	4	96	94.76	-2.91	0.94	0.993416
6437	dm3.chr3L	6,710,145 – 6,710,237	- - - intron="intron;ID=intron_CG10118:7_CG10118:3;Name=ple-in;Parent=FBtr0076957;parent_type=mRNA" - - - -	8864	6,710,145 – 6,710,237	-	8	122	76.54	-1.42	0.58	0.545594
6438	dm3.chr3L	6,713,841 – 6,713,944	- - - - - - - -	8865	6,713,841 – 6,713,944	+	6	105	74.01	-1.94	0.56	0.969088
6439	dm3.chr3L	6,734,048 – 6,734,121	- - CDS="CDS;ID=CDS_FBgn0261934:10_405;Name=dikar-cds;Parent=FBtr0303748,FBtr0303749,FBtr0303750;parent_type=mRNA" - - - - -	8866	6,734,048 – 6,734,121	-	14	75	75.34	-1.22	0.46	0.594405
6440	dm3.chr3L	6,744,458 – 6,744,535	- - CDS="CDS;ID=CDS_CG10107:2_334;Name=CG10107-cds;Parent=FBtr0076950,FBtr0076952;parent_type=mRNA" - - - - -	8867	6,744,458 – 6,744,535	+	12	95	69.42	-0.81	0.60	0.844708
6441	dm3.chr3L	6,749,546 – 6,749,606	- - - - - - - -	8868	6,749,546 – 6,749,606	+	9	65	67.84	-0.02	0.64	0.526671
6442	dm3.chr3L	6,749,831 – 6,749,933	- - - - - - - -	8869	6,749,831 – 6,749,933	+	9	109	63.53	-2.72	0.41	0.999245
6442	dm3.chr3L	6,749,831 – 6,749,933	- - - - - - - -	8870	6,749,831 – 6,749,933	-	9	109	63.53	-3.56	0.53	0.999967
6443	dm3.chr3L	6,753,474 – 6,753,575	- - CDS="CDS;ID=CDS_CG32392:5_295;Name=CG32392-cds;Parent=FBtr0076948;parent_type=mRNA" - - - - -	8871	6,753,474 – 6,753,575	-	12	117	80.23	-1.18	0.71	0.623626
6444	dm3.chr3L	6,759,631 – 6,759,687	- - - - - - - -	8872	6,759,631 – 6,759,687	+	12	58	93.69	-2.99	0.82	0.984164
6444	dm3.chr3L	6,759,631 – 6,759,687	- - - - - - - -	8873	6,759,631 – 6,759,687	-	12	58	93.69	-2.91	0.88	0.990504
6445	dm3.chr3L	6,762,396 – 6,762,493	- - - - - - - -	8874	6,762,396 – 6,762,493	-	5	99	87.84	-3.47	0.82	0.997207
6446	dm3.chr3L	6,766,610 – 6,766,731	- - - - - - - -	8875	6,766,610 – 6,766,731	+	5	124	92.30	-2.70	0.72	0.882476
6447	dm3.chr3L	6,767,917 – 6,768,027	- - - - - - - -	8876	6,767,917 – 6,768,027	+	6	110	91.15	-2.68	0.93	0.993351
6447	dm3.chr3L	6,767,917 – 6,768,027	- - - - - - - -	8877	6,767,917 – 6,768,027	-	6	110	91.15	-2.62	1.00	0.996376
6448	dm3.chr3L	6,773,724 – 6,773,817	- - - - - - - -	8878	6,773,724 – 6,773,817	-	10	104	78.01	-1.70	0.48	0.558999
6449	dm3.chr3L	6,781,133 – 6,781,232	- - - - - - - -	8879	6,781,133 – 6,781,232	-	5	100	86.63	-1.13	0.86	0.523112
6450	dm3.chr3L	6,786,020 – 6,786,180	- - - - - - - -	8880	6,786,020 – 6,786,136	+	11	120	85.96	-2.35	0.64	0.900536
				8881	6,786,060 – 6,786,167	+	11	121	79.27	-3.37	0.57	0.998400
				8882	6,786,077 – 6,786,180	+	11	121	70.66	-1.47	0.55	0.936445
6451	dm3.chr3L	6,794,927 – 6,795,040	- - - - - - - -	8883	6,794,927 – 6,795,040	-	6	125	69.27	-1.63	0.39	0.601242
6452	dm3.chr3L	6,811,775 – 6,811,876	- - - - - - - -	8884	6,811,775 – 6,811,876	+	3	101	85.10	-1.00	0.95	0.720870
6453	dm3.chr3L	6,813,196 – 6,813,294	- - - - - - - -	8885	6,813,196 – 6,813,294	+	12	120	81.96	-2.07	0.62	0.875708
6454	dm3.chr3L	6,815,020 – 6,815,111	- - - - - - - -	8886	6,815,020 – 6,815,111	+	8	101	81.85	-1.81	0.66	0.823664
6454	dm3.chr3L	6,815,020 – 6,815,111	- - - - - - - -	8887	6,815,020 – 6,815,111	-	8	101	81.85	-2.10	0.67	0.936655
6455	dm3.chr3L	6,823,157 – 6,823,255	- - - - - - - -	8888	6,823,157 – 6,823,247	+	12	116	83.49	-3.27	0.58	0.991561
				8889	6,823,157 – 6,823,247	-	12	116	83.49	-2.54	0.61	0.940110
				8890	6,823,157 – 6,823,255	+	12	118	81.38	-3.27	0.55	0.995211
				8891	6,823,157 – 6,823,255	-	12	118	81.38	-2.70	0.57	0.978459
6456	dm3.chr3L	6,824,035 – 6,824,186	- - - - - - - -	8892	6,824,035 – 6,824,186	+	6	189	64.54	-0.87	0.50	0.592671
6457	dm3.chr3L	6,828,550 – 6,828,644	- - - - - - - -	8893	6,828,550 – 6,828,644	+	5	101	88.83	-1.49	0.93	0.878294
6457	dm3.chr3L	6,828,550 – 6,828,644	- - - - - - - -	8894	6,828,550 – 6,828,644	-	5	101	88.83	-2.32	0.70	0.754475
6458	dm3.chr3L	6,829,750 – 6,829,854	- - - - - - - -	8895	6,829,750 – 6,829,854	-	10	107	75.91	-1.22	0.49	0.527121
6459	dm3.chr3L	6,835,359 – 6,835,454	- - - - - - - -	8896	6,835,359 – 6,835,454	+	6	98	76.71	-1.87	0.47	0.630608
6460	dm3.chr3L	6,846,968 – 6,847,024	- - - - - - - -	8897	6,846,968 – 6,847,024	-	4	56	98.21	-1.20	0.98	0.710448
6461	dm3.chr3L	6,857,960 – 6,858,051	- - - - - - - -	8898	6,857,960 – 6,858,051	-	8	95	87.23	-2.14	0.92	0.983307
6462	dm3.chr3L	6,866,402 – 6,866,524	- - - - - - - -	8899	6,866,402 – 6,866,493	+	8	100	77.60	-1.31	0.59	0.545507
6462	dm3.chr3L	6,866,402 – 6,866,524	- - - - - - - -	8900	6,866,431 – 6,866,524	+	10	105	69.69	-0.99	0.49	0.755121
6463	dm3.chr3L	6,878,597 – 6,878,689	- - - - - - - -	8901	6,878,597 – 6,878,689	-	9	96	90.39	-1.86	0.73	0.540675
6464	dm3.chr3L	6,891,092 – 6,891,185	- - - - - - - -	8902	6,891,092 – 6,891,185	+	12	104	85.20	-3.39	0.66	0.996188
6464	dm3.chr3L	6,891,092 – 6,891,185	- - - - - - - -	8903	6,891,092 – 6,891,185	-	12	104	85.20	-3.79	0.65	0.998346
6465	dm3.chr3L	6,892,529 – 6,892,684	- - - - - - - -	8904	6,892,529 – 6,892,646	+	4	117	88.12	-2.63	0.73	0.939536
				8905	6,892,529 – 6,892,646	-	4	117	88.12	-1.81	0.86	0.874584
				8906	6,892,569 – 6,892,684	+	3	115	95.31	-3.50	0.94	0.997115
				8907	6,892,569 – 6,892,684	-	3	115	95.31	-2.23	0.78	0.595339
6466	dm3.chr3L	6,908,875 – 6,908,965	- - - - - - - -	8908	6,908,875 – 6,908,965	-	7	108	73.97	-1.44	0.57	0.829884
6467	dm3.chr3L	6,915,983 – 6,916,080	- - - - - - - -	8909	6,915,983 – 6,916,080	-	8	105	77.63	-2.69	0.58	0.991915
6468	dm3.chr3L	6,919,172 – 6,919,268	- - - - - - - -	8910	6,919,172 – 6,919,268	+	12	110	69.52	-1.36	0.44	0.768769
6469	dm3.chr3L	6,928,024 – 6,928,123	- - - - - - - -	8911	6,928,024 – 6,928,123	-	8	102	73.96	-1.39	0.53	0.838595
6470	dm3.chr3L	6,932,169 – 6,932,304	- - - - - - - -	8912	6,932,169 – 6,932,288	+	12	120	95.91	-0.78	0.98	0.500000
6470	dm3.chr3L	6,932,169 – 6,932,304	- - - - - - - -	8913	6,932,209 – 6,932,304	+	11	103	84.59	-1.28	0.84	0.803755
6471	dm3.chr3L	6,935,481 – 6,935,554	- - - - - - - -	8914	6,935,481 – 6,935,554	-	3	73	92.69	-1.90	0.85	0.738889
6472	dm3.chr3L	6,939,968 – 6,940,067	- - - intron="intron;ID=intron_FBgn0035719:5_FBgn0035719:6;Name=tow-in;Parent=FBtr0076895,FBtr0113150;parent_type=mRNA" - - - -	8915	6,939,968 – 6,940,067	+	5	108	82.17	-2.06	0.61	0.714877
6473	dm3.chr3L	6,941,475 – 6,941,565	- - CDS="CDS;ID=CDS_FBgn0035719:9_360;Name=tow-cds;Parent=FBtr0113150;parent_type=mRNA" - - - - -	8916	6,941,475 – 6,941,565	-	12	90	96.06	-1.73	0.97	0.935603
6474	dm3.chr3L	6,942,084 – 6,942,188	- - - - - - - -	8917	6,942,084 – 6,942,188	+	4	104	81.29	-1.76	0.68	0.643845
6475	dm3.chr3L	6,952,713 – 6,952,804	- - - - - - - -	8918	6,952,713 – 6,952,804	-	8	92	70.06	-1.73	0.43	0.853033
6476	dm3.chr3L	6,977,650 – 6,977,742	- - - - - - - -	8919	6,977,650 – 6,977,742	+	4	110	61.11	-0.98	0.45	0.554734
6477	dm3.chr3L	6,978,416 – 6,978,486	- - - - - - - -	8920	6,978,416 – 6,978,486	+	8	83	65.89	-1.35	0.50	0.948137
6478	dm3.chr3L	6,988,936 – 6,989,034	- - - - - - - -	8921	6,988,936 – 6,989,034	-	6	100	74.65	-2.13	0.45	0.897279
6479	dm3.chr3L	6,992,560 – 6,992,662	- - - - - - - -	8922	6,992,560 – 6,992,662	-	6	105	78.72	-2.85	0.46	0.969236
6480	dm3.chr3L	6,998,154 – 6,998,247	- - - intron="intron;ID=intron_FBgn0260660:1_FBgn0260660:2;Name=mp-in;Parent=FBtr0301105,FBtr0301108,FBtr0301111,FBtr0301112,FBtr0301113,FBtr0301114;parent_type=mRNA" - - - -	8923	6,998,154 – 6,998,247	+	6	99	75.37	-1.53	0.62	0.888121
6481	dm3.chr3L	7,011,085 – 7,011,179	- - - intron="intron;ID=intron_FBgn0260660:5_FBgn0260660:6;Name=mp-in;Parent=FBtr0301106,FBtr0301107,FBtr0301109,FBtr0301110,FBtr0301958;parent_type=mRNA" - - - -	8924	7,011,085 – 7,011,179	+	7	103	73.82	-1.64	0.49	0.639191
6482	dm3.chr3L	7,014,449 – 7,014,500	- - - intron="intron;ID=intron_FBgn0260660:6_FBgn0260660:8;Name=mp-in;Parent=FBtr0301109;parent_type=mRNA" - - - -	8925	7,014,449 – 7,014,500	-	5	51	89.80	-1.94	0.79	0.759343
6483	dm3.chr3L	7,028,320 – 7,028,430	- - CDS="CDS;ID=CDS_FBgn0260660:12_428;Name=mp-cds;Parent=FBtr0301113;parent_type=mRNA" - - - - -	8926	7,028,320 – 7,028,430	+	11	120	79.56	-1.98	0.56	0.895431
6484	dm3.chr3L	7,028,719 – 7,028,779	- - - intron="intron;ID=intron_FBgn0260660:12_FBgn0260660:13;Name=mp-in;Parent=FBtr0301113;parent_type=mRNA" - - - -	8927	7,028,719 – 7,028,779	+	5	60	89.73	-3.01	0.77	0.985122
6485	dm3.chr3L	7,030,595 – 7,030,784	- - - intron="intron;ID=intron_FBgn0260660:14_FBgn0260660:15;Name=mp-in;Parent=FBtr0301111;parent_type=mRNA" - - - -	8928	7,030,595 – 7,030,688	+	8	113	75.55	-2.22	0.54	0.976620
				8929	7,030,595 – 7,030,688	-	8	113	75.55	-1.49	0.63	0.908683
				8930	7,030,611 – 7,030,717	+	12	116	75.29	-1.29	0.52	0.598064
				8931	7,030,611 – 7,030,717	-	12	116	75.29	-1.05	0.59	0.630153
				8932	7,030,688 – 7,030,784	-	5	97	67.85	-2.06	0.47	0.981381
6486	dm3.chr3L	7,030,952 – 7,031,073	- - - intron="intron;ID=intron_FBgn0260660:14_FBgn0260660:15;Name=mp-in;Parent=FBtr0301111;parent_type=mRNA" - - - -	8933	7,030,952 – 7,031,073	+	7	122	77.30	-1.81	0.70	0.968576
6487	dm3.chr3L	7,036,578 – 7,036,709	- - CDS="CDS;ID=CDS_FBgn0260660:18_428;Name=mp-cds;Parent=FBtr0301105,FBtr0301106,FBtr0301107,FBtr0301108,FBtr0301109,FBtr0301113,FBtr0301114,FBtr0301958;parent_type=mRNA" - - - - -	8934	7,036,578 – 7,036,709	+	10	148	62.19	-1.92	0.37	0.989985
6487	dm3.chr3L	7,036,578 – 7,036,709		8935	7,036,578 – 7,036,709	-	10	148	62.19	-1.99	0.33	0.981115
6488	dm3.chr3L	7,046,235 – 7,046,334	- - - - - - - -	8936	7,046,235 – 7,046,334	+	3	99	100.00	-2.66	1.00	0.991947
6489	dm3.chr3L	7,055,209 – 7,055,284	- - - intron="intron;ID=intron_FBgn0035733:4_FBgn0035733:3;Name=CG8641-in;Parent=FBtr0076931;parent_type=mRNA" - - - -	8937	7,055,209 – 7,055,284	+	5	75	94.40	-2.70	0.88	0.978683
6489	dm3.chr3L	7,055,209 – 7,055,284		8938	7,055,209 – 7,055,284	-	5	75	94.40	-3.40	0.93	0.997043
6490	dm3.chr3L	7,057,212 – 7,057,305	- - - intron="intron;ID=intron_FBgn0035733:5_FBgn0035733:4;Name=CG8641-in;Parent=FBtr0076931;parent_type=mRNA" - - - -	8939	7,057,212 – 7,057,305	-	7	110	68.37	-1.82	0.37	0.702715
6491	dm3.chr3L	7,058,527 – 7,058,596	- - - intron="intron;ID=intron_FBgn0035733:5_FBgn0035733:4;Name=CG8641-in;Parent=FBtr0076931;parent_type=mRNA" - - - -	8940	7,058,527 – 7,058,596	+	11	74	80.96	-1.89	0.62	0.844629
6492	dm3.chr3L	7,063,886 – 7,063,939	- - - - - - - -	8941	7,063,886 – 7,063,939	-	11	54	90.33	-1.41	0.89	0.792449
6493	dm3.chr3L	7,083,930 – 7,084,043	- - - - - - - -	8942	7,083,930 – 7,084,043	-	5	113	71.21	-1.11	0.57	0.572317
6494	dm3.chr3L	7,084,197 – 7,084,292	- - - - - - - -	8943	7,084,197 – 7,084,292	+	6	95	75.72	-1.39	0.64	0.881846
6494	dm3.chr3L	7,084,197 – 7,084,292	- - - - - - - -	8944	7,084,197 – 7,084,292	-	6	95	75.72	-2.29	0.63	0.992793
6495	dm3.chr3L	7,084,651 – 7,084,756	- - - - - - - -	8945	7,084,651 – 7,084,756	+	7	116	69.49	-1.40	0.47	0.855907
6496	dm3.chr3L	7,091,560 – 7,091,653	- - - intron="intron;ID=intron_FBgn0053556:1_FBgn0053556:2;Name=form3-in;Parent=FBtr0091533,FBtr0113469;parent_type=mRNA" - - - -	8946	7,091,560 – 7,091,653	-	6	101	79.63	-1.77	0.65	0.814497
6497	dm3.chr3L	7,110,504 – 7,110,600	- - CDS="CDS;ID=CDS_FBgn0053556:5_369;Name=form3-cds;Parent=FBtr0113469;parent_type=mRNA" - - - - -	8947	7,110,504 – 7,110,600	-	7	102	71.55	-1.70	0.42	0.667276
6498	dm3.chr3L	7,136,199 – 7,136,292	- - - - - - - -	8948	7,136,199 – 7,136,292	-	5	94	93.36	-1.55	0.88	0.645921
6499	dm3.chr3L	7,143,274 – 7,143,335	- - - intron="intron;ID=intron_FBgn0259173:9_FBgn0259173:8;Name=corn-in;Parent=FBtr0299640,FBtr0299641;parent_type=mRNA" - - - -	8949	7,143,274 – 7,143,335	-	6	67	80.63	-2.06	0.80	0.979355
6500	dm3.chr3L	7,143,625 – 7,143,787	- - - intron="intron;ID=intron_FBgn0259173:9_FBgn0259173:8;Name=corn-in;Parent=FBtr0299640,FBtr0299641;parent_type=mRNA" - - - -	8950	7,143,625 – 7,143,724	+	5	108	90.74	-2.77	0.81	0.975964
6500	dm3.chr3L	7,143,625 – 7,143,787		8951	7,143,724 – 7,143,787	-	6	63	75.87	-1.18	0.71	0.858173
6501	dm3.chr3L	7,145,852 – 7,145,948	- - - intron="intron;ID=intron_FBgn0259173:9_FBgn0259173:8;Name=corn-in;Parent=FBtr0299640,FBtr0299641;parent_type=mRNA" - - - -	8952	7,145,852 – 7,145,948	+	7	103	85.69	-2.04	0.64	0.603192
6502	dm3.chr3L	7,147,553 – 7,147,654	- - - intron="intron;ID=intron_FBgn0259173:9_FBgn0259173:8;Name=corn-in;Parent=FBtr0299640,FBtr0299641;parent_type=mRNA" - - - -	8953	7,147,553 – 7,147,654	+	5	109	71.17	-1.55	0.48	0.661621
6503	dm3.chr3L	7,151,742 – 7,151,843	- - - - - - - -	8954	7,151,742 – 7,151,843	+	10	107	78.17	-2.12	0.48	0.917506
6504	dm3.chr3L	7,154,930 – 7,155,021	- - - intron="intron;ID=intron_CG17742:1_CG17742:2;Name=CG17742-in;Parent=FBtr0076922;parent_type=mRNA" - - - -	8955	7,154,930 – 7,155,021	-	4	94	90.34	-1.90	0.75	0.500000
6505	dm3.chr3L	7,168,921 – 7,169,014	- - - intron="intron;ID=intron_FBgn0259141:23_FBgn0259141:22;Name=CG42256-in;Parent=FBtr0299549,FBtr0299550,FBtr0299551,FBtr0299552,FBtr0299547,FBtr0299548,FBtr0302123,FBtr0302124;parent_type=mRNA" - - - -	8956	7,168,921 – 7,169,014	+	5	96	68.76	-1.71	0.58	0.970402
6506	dm3.chr3L	7,170,173 – 7,170,267	- - - intron="intron;ID=intron_FBgn0259141:23_FBgn0259141:22;Name=CG42256-in;Parent=FBtr0299549,FBtr0299550,FBtr0299551,FBtr0299552,FBtr0299547,FBtr0299548,FBtr0302123,FBtr0302124;parent_type=mRNA" - - - -	8957	7,170,173 – 7,170,267	+	4	100	86.43	-1.54	0.78	0.500000
6506	dm3.chr3L	7,170,173 – 7,170,267		8958	7,170,173 – 7,170,267	-	4	100	86.43	-1.54	0.86	0.785128
6507	dm3.chr3L	7,170,729 – 7,170,832	- - - intron="intron;ID=intron_FBgn0259141:23_FBgn0259141:22;Name=CG42256-in;Parent=FBtr0299549,FBtr0299550,FBtr0299551,FBtr0299552,FBtr0299547,FBtr0299548,FBtr0302123,FBtr0302124;parent_type=mRNA" - - - -	8959	7,170,729 – 7,170,832	+	11	110	80.23	-1.06	0.72	0.672007
6508	dm3.chr3L	7,175,739 – 7,175,825	- - - - - - - -	8960	7,175,739 – 7,175,825	-	9	92	69.88	-0.89	0.48	0.654198
6509	dm3.chr3L	7,176,567 – 7,176,663	- - CDS="CDS;ID=CDS_FBgn0259141:27_425;Name=CG42256-cds;Parent=FBtr0302123,FBtr0302124;parent_type=mRNA" - - - - -	8961	7,176,567 – 7,176,661	-	14	107	68.60	-0.81	0.47	0.697056
6509	dm3.chr3L	7,176,567 – 7,176,663		8962	7,176,569 – 7,176,663	-	13	107	67.33	-1.02	0.47	0.877989
6510	dm3.chr3L	7,183,887 – 7,183,937	- - - - - - - -	8963	7,183,887 – 7,183,937	-	4	50	100.00	-1.15	1.00	0.734424
6511	dm3.chr3L	7,191,493 – 7,191,560	- - - - - - - -	8964	7,191,493 – 7,191,560	-	11	78	78.96	-1.88	0.71	0.971254
6512	dm3.chr3L	7,194,055 – 7,194,184	- - - - - - - -	8965	7,194,055 – 7,194,184	+	10	136	78.05	-0.78	0.67	0.555314
6513	dm3.chr3L	7,204,372 – 7,204,422	- - - - - - - -	8966	7,204,372 – 7,204,422	+	3	50	94.67	-1.94	0.97	0.958971
6514	dm3.chr3L	7,218,267 – 7,218,357	- - - - - - - -	8967	7,218,267 – 7,218,357	-	9	113	55.94	-0.37	0.46	0.662004
6515	dm3.chr3L	7,223,380 – 7,223,515	- - - - - - - -	8968	7,223,380 – 7,223,496	+	6	118	68.01	-1.23	0.42	0.517526
				8969	7,223,380 – 7,223,496	-	6	118	68.01	-0.48	0.63	0.651611
				8970	7,223,418 – 7,223,515	+	5	97	91.96	-3.00	0.78	0.979652
				8971	7,223,418 – 7,223,515	-	5	97	91.96	-1.76	0.82	0.643235
6516	dm3.chr3L	7,224,617 – 7,224,714	- - - - - - - -	8972	7,224,617 – 7,224,714	-	8	119	81.07	-1.51	0.67	0.520076
6517	dm3.chr3L	7,225,624 – 7,225,741	- - - - - - - -	8973	7,225,624 – 7,225,737	-	11	117	94.19	-2.03	0.95	0.969332
6517	dm3.chr3L	7,225,624 – 7,225,741	- - - - - - - -	8974	7,225,628 – 7,225,741	-	11	117	93.99	-1.65	0.87	0.721883
6518	dm3.chr3L	7,234,116 – 7,234,171	- - - intron="intron;ID=intron_CG8615:2_CG8615:3;Name=RpL18-in;Parent=FBtr0076892;parent_type=mRNA" - - - -	8975	7,234,116 – 7,234,171	+	5	55	84.36	-1.61	0.74	0.613140
6519	dm3.chr3L	7,247,564 – 7,247,654	- - - intron="intron;ID=intron_CG14830:2_CG14830:3;Name=CG14830-in;Parent=FBtr0076888;parent_type=mRNA" - - - -	8976	7,247,564 – 7,247,654	+	8	117	68.30	-2.09	0.46	0.956139
6519	dm3.chr3L	7,247,564 – 7,247,654		8977	7,247,564 – 7,247,654	-	8	117	68.30	-1.24	0.56	0.823930
6520	dm3.chr3L	7,294,341 – 7,294,437	- - - - - - - -	8978	7,294,341 – 7,294,437	+	8	107	70.22	-1.34	0.52	0.933021
6521	dm3.chr3L	7,304,442 – 7,304,543	- - - - - - - -	8979	7,304,442 – 7,304,543	-	5	101	94.64	-1.89	0.88	0.813462
6522	dm3.chr3L	7,328,330 – 7,328,424	- - - - - - - -	8980	7,328,330 – 7,328,424	+	7	95	68.67	-2.73	0.37	0.990711
6522	dm3.chr3L	7,328,330 – 7,328,424	- - - - - - - -	8981	7,328,330 – 7,328,424	-	7	95	68.67	-1.86	0.37	0.823866
6523	dm3.chr3L	7,333,762 – 7,333,876	- - CDS="CDS;ID=CDS_CG8597:6_332;Name=lark-cds;Parent=FBtr0076841;parent_type=mRNA" - - - - -	8982	7,333,762 – 7,333,876	-	13	120	81.96	-1.82	0.54	0.701134
6524	dm3.chr3L	7,345,257 – 7,345,397	- - - - - - - -	8983	7,345,257 – 7,345,397	+	6	141	64.29	-0.36	0.65	0.842538
6524	dm3.chr3L	7,345,257 – 7,345,397	- - - - - - - -	8984	7,345,257 – 7,345,397	-	6	141	64.29	-0.81	0.72	0.976727
6525	dm3.chr3L	7,349,781 – 7,349,881	- - - - - - - -	8985	7,349,781 – 7,349,881	+	6	101	77.67	-0.82	0.76	0.611863
6526	dm3.chr3L	7,406,153 – 7,406,251	- - - - - - - -	8986	7,406,153 – 7,406,251	-	9	117	77.56	-1.62	0.55	0.721304
6527	dm3.chr3L	7,429,963 – 7,430,061	- - CDS="CDS;ID=CDS_FBgn0035782:1_352;Name=CG14835-cds;Parent=FBtr0076866;parent_type=mRNA" intron="intron;ID=intron_FBgn0259935:1_FBgn0259935:2;Name=CG42458-in;Parent=FBtr0300248,FBtr0304991;parent_type=mRNA" - - - -	8987	7,429,963 – 7,430,061	+	6	111	61.72	-1.10	0.44	0.909718
6528	dm3.chr3L	7,432,896 – 7,432,981	- - - - - - - -	8988	7,432,896 – 7,432,981	+	4	87	58.71	0.07	0.68	0.588228
6529	dm3.chr3L	7,435,579 – 7,435,676	- - - - - - - -	8989	7,435,579 – 7,435,676	-	9	105	69.84	-1.49	0.39	0.678769
6530	dm3.chr3L	7,438,767 – 7,438,895	- - CDS="CDS;ID=CDS_FBgn0259935:3_461;Name=CG42458-cds;Parent=FBtr0304991;parent_type=mRNA" - - - - -	8990	7,438,767 – 7,438,895	+	15	128	81.48	-1.50	0.58	0.683494
6531	dm3.chr3L	7,443,084 – 7,443,224	- - - - - - - -	8991	7,443,084 – 7,443,190	+	9	118	81.91	-4.31	0.61	0.999596
				8992	7,443,084 – 7,443,190	-	9	118	81.91	-2.76	0.83	0.996786
				8993	7,443,124 – 7,443,224	+	10	119	71.63	-1.76	0.51	0.967753
				8994	7,443,124 – 7,443,224	-	10	119	71.63	-1.92	0.53	0.986186
6532	dm3.chr3L	7,452,278 – 7,452,385	- - - - - - - -	8995	7,452,278 – 7,452,385	+	12	120	78.49	-1.26	0.58	0.519278
6533	dm3.chr3L	7,456,303 – 7,456,397	- - - - - - - -	8996	7,456,303 – 7,456,397	-	12	112	75.82	-1.08	0.57	0.510097
6534	dm3.chr3L	7,457,751 – 7,457,857	- - - - - - - -	8997	7,457,751 – 7,457,857	+	11	113	80.54	-1.04	0.68	0.505899
6535	dm3.chr3L	7,468,454 – 7,468,547	- - - - - - - -	8998	7,468,454 – 7,468,547	-	6	105	77.06	-2.28	0.57	0.966912
6536	dm3.chr3L	7,497,680 – 7,497,772	- - - - - - - -	8999	7,497,680 – 7,497,772	-	11	110	77.01	-2.60	0.35	0.820000
6537	dm3.chr3L	7,507,833 – 7,507,926	- - CDS="CDS;ID=CDS_FBgn0035793:8_462;Name=CG7546-cds;Parent=FBtr0290026,FBtr0305073;parent_type=mRNA" - - - - -	9000	7,507,833 – 7,507,926	+	7	99	75.62	-0.81	0.80	0.812496
6538	dm3.chr3L	7,524,030 – 7,524,129	- - - intron="intron;ID=intron_FBgn0028582:1_FBgn0028582:3;Name=lqf-in;Parent=FBtr0076798;parent_type=mRNA" - - - -	9001	7,524,030 – 7,524,129	+	5	100	84.45	-2.41	0.61	0.825636
6538	dm3.chr3L	7,524,030 – 7,524,129		9002	7,524,030 – 7,524,129	-	5	100	84.45	-2.51	0.72	0.962267
6539	dm3.chr3L	7,538,168 – 7,538,276	- - - - - - - -	9003	7,538,168 – 7,538,276	+	8	117	71.05	-1.29	0.42	0.561687
6540	dm3.chr3L	7,543,668 – 7,543,761	- - - - - - - -	9004	7,543,668 – 7,543,761	-	6	95	92.24	-1.74	0.86	0.777869
6541	dm3.chr3L	7,547,676 – 7,547,767	- - - - - - - -	9005	7,547,676 – 7,547,767	-	12	118	78.40	-2.10	0.51	0.786101
6542	dm3.chr3L	7,557,480 – 7,557,591	- - CDS="CDS;ID=CDS_FBgn0035798:5_393;Name=CG7526-cds;Parent=FBtr0301221,FBtr0301222;parent_type=mRNA" - - - - -	9006	7,557,480 – 7,557,591	+	11	120	62.29	-1.12	0.33	0.657028
6543	dm3.chr3L	7,562,948 – 7,563,052	- - - - - - - -	9007	7,562,948 – 7,563,052	-	12	108	84.46	-1.81	0.62	0.695679
6544	dm3.chr3L	7,565,765 – 7,565,839	- - - - - - - -	9008	7,565,765 – 7,565,839	+	11	78	77.60	-1.58	0.56	0.903783
6544	dm3.chr3L	7,565,765 – 7,565,839	- - - - - - - -	9009	7,565,765 – 7,565,839	-	11	78	77.60	-1.91	0.52	0.944136
6545	dm3.chr3L	7,573,193 – 7,573,330	- - - - - - - -	9010	7,573,193 – 7,573,292	+	3	99	86.49	-3.89	0.84	0.998449
				9011	7,573,193 – 7,573,292	-	3	99	86.49	-3.78	0.80	0.997790
				9012	7,573,230 – 7,573,330	+	3	100	72.56	-3.07	0.82	0.998078
				9013	7,573,230 – 7,573,330	-	3	100	72.56	-1.55	0.78	0.879669
6546	dm3.chr3L	7,592,283 – 7,592,333	- - - intron="intron;ID=intron_FBgn0035802:1_FBgn0035802:2;Name=CG33275-in;Parent=FBtr0089850;parent_type=mRNA" - - - -	9014	7,592,283 – 7,592,333	+	10	60	86.18	-1.91	0.83	0.933713
6546	dm3.chr3L	7,592,283 – 7,592,333		9015	7,592,283 – 7,592,333	-	10	60	86.18	-2.22	0.85	0.977085
6547	dm3.chr3L	7,596,821 – 7,596,941	- - CDS="CDS;ID=CDS_FBgn0035802:3_360;Name=CG33275-cds;Parent=FBtr0089850;parent_type=mRNA" - - - - -	9016	7,596,821 – 7,596,941	+	12	124	77.14	-1.08	0.61	0.576243
6548	dm3.chr3L	7,597,997 – 7,598,088	- - - intron="intron;ID=intron_FBgn0035802:3_FBgn0035802:5;Name=CG33275-in;Parent=FBtr0089850;parent_type=mRNA" - - - -	9017	7,597,997 – 7,598,088	+	7	100	72.03	-1.31	0.47	0.585510
6549	dm3.chr3L	7,601,597 – 7,601,677	- - - intron="intron;ID=intron_FBgn0035802:4_FBgn0035802:5;Name=CG33275-in;Parent=FBtr0089849;parent_type=mRNA" - - - -	9018	7,601,597 – 7,601,677	+	5	80	62.89	-1.22	0.45	0.882092
6550	dm3.chr3L	7,605,022 – 7,605,122	- - - intron="intron;ID=intron_FBgn0035802:4_FBgn0035802:5;Name=CG33275-in;Parent=FBtr0089849;parent_type=mRNA" - - - -	9019	7,605,022 – 7,605,122	+	7	109	74.36	-1.90	0.44	0.784527
6551	dm3.chr3L	7,607,275 – 7,607,373	- - - intron="intron;ID=intron_FBgn0035802:4_FBgn0035802:5;Name=CG33275-in;Parent=FBtr0089849;parent_type=mRNA" - - - -	9020	7,607,275 – 7,607,373	+	5	109	73.22	-1.94	0.43	0.681451
6552	dm3.chr3L	7,616,757 – 7,616,853	- - - intron="intron;ID=intron_FBgn0035802:8_FBgn0035802:9;Name=CG33275-in;Parent=FBtr0089850,FBtr0089849;parent_type=mRNA" - - - -	9021	7,616,757 – 7,616,853	+	12	113	78.17	-1.07	0.65	0.647937
6553	dm3.chr3L	7,624,025 – 7,624,118	- - - intron="intron;ID=intron_FBgn0035802:10_FBgn0035802:12;Name=CG33275-in;Parent=FBtr0089850,FBtr0089849;parent_type=mRNA" - - - -	9022	7,624,025 – 7,624,118	+	12	108	78.09	-1.62	0.73	0.968463
6554	dm3.chr3L	7,646,227 – 7,646,347	- - CDS="CDS;ID=CDS_FBgn0035807:1_305;Name=CG7492-cds;Parent=FBtr0076821;parent_type=mRNA" intron="intron;ID=intron_FBgn0052373:1_FBgn0052373:2;Name=CG32373-in;Parent=FBtr0076806;parent_type=mRNA" - - - -	9023	7,646,227 – 7,646,347	-	8	120	76.02	-1.00	0.63	0.602589
6555	dm3.chr3L	7,668,696 – 7,668,747	- - CDS="CDS;ID=CDS_FBgn0261687:10_439;Name=Ank2-cds;Parent=FBtr0303125;parent_type=mRNA" intron="intron;ID=intron_FBgn0261687:11_FBgn0261687:9;Name=Ank2-in;Parent=FBtr0303116;parent_type=mRNA" - - - -	9024	7,668,696 – 7,668,747	+	5	51	88.82	-1.86	0.73	0.553698
6556	dm3.chr3L	7,677,929 – 7,677,985	- - CDS="CDS;ID=CDS_FBgn0261687:10_439;Name=Ank2-cds;Parent=FBtr0303125;parent_type=mRNA" intron="intron;ID=intron_FBgn0261687:11_FBgn0261687:9;Name=Ank2-in;Parent=FBtr0303116;parent_type=mRNA" - - - -	9025	7,677,929 – 7,677,985	-	6	59	65.15	-1.27	0.41	0.785939
6557	dm3.chr3L	7,686,552 – 7,686,663	- - CDS="CDS;ID=CDS_FBgn0261687:10_439;Name=Ank2-cds;Parent=FBtr0303125;parent_type=mRNA" intron="intron;ID=intron_FBgn0261687:11_FBgn0261687:9;Name=Ank2-in;Parent=FBtr0303116;parent_type=mRNA" - - - -	9026	7,686,552 – 7,686,663	-	10	120	76.67	-1.73	0.45	0.654870
6558	dm3.chr3L	7,686,851 – 7,686,968	- - CDS="CDS;ID=CDS_FBgn0261687:10_439;Name=Ank2-cds;Parent=FBtr0303125;parent_type=mRNA" intron="intron;ID=intron_FBgn0261687:11_FBgn0261687:9;Name=Ank2-in;Parent=FBtr0303116;parent_type=mRNA" - - - -	9027	7,686,851 – 7,686,968	-	10	120	85.95	-1.84	0.78	0.894046
6559	dm3.chr3L	7,687,251 – 7,687,348	- - - intron="intron;ID=intron_FBgn0261687:13_FBgn0261687:10;Name=Ank2-in;Parent=FBtr0303125;parent_type=mRNA" - - - -	9028	7,687,251 – 7,687,348	+	3	97	94.50	-2.29	0.98	0.985667
6560	dm3.chr3L	7,733,906 – 7,734,009	- - - intron="intron;ID=intron_FBgn0035815:9_FBgn0035815:8;Name=CG7422-in;Parent=FBtr0110885,FBtr0301205;parent_type=mRNA" - - - -	9029	7,733,906 – 7,734,009	+	6	104	84.04	-2.02	0.61	0.712197
6561	dm3.chr3L	7,773,897 – 7,773,996	- - CDS="CDS;ID=CDS_FBgn0052369:4_469;Name=CG32369-cds;Parent=FBtr0076783;parent_type=mRNA" - - - - -	9030	7,773,897 – 7,773,996	-	12	111	70.57	-0.79	0.64	0.935236
6562	dm3.chr3L	7,776,566 – 7,776,630	- - - intron="intron;ID=intron_FBgn0052369:8_FBgn0052369:5;Name=CG32369-in;Parent=FBtr0304992;parent_type=mRNA" - - - -	9031	7,776,566 – 7,776,630	+	3	64	96.35	-2.56	1.02	0.995004
6563	dm3.chr3L	7,784,085 – 7,784,236	- - - intron="intron;ID=intron_FBgn0052369:8_FBgn0052369:5;Name=CG32369-in;Parent=FBtr0304992;parent_type=mRNA" - - - -	9032	7,784,085 – 7,784,196	+	6	118	77.54	-1.71	0.51	0.577564
6563	dm3.chr3L	7,784,085 – 7,784,236		9033	7,784,122 – 7,784,236	+	6	120	79.82	-1.83	0.68	0.920361
6564	dm3.chr3L	7,796,592 – 7,796,687	- - CDS="CDS;ID=CDS_FBgn0052369:8_462;Name=CG32369-cds;Parent=FBtr0304992;parent_type=mRNA" - - - - -	9034	7,796,592 – 7,796,687	+	11	121	71.55	-2.06	0.57	0.991260
6565	dm3.chr3L	7,810,966 – 7,811,074	- - - intron="intron;ID=intron_FBgn0016694:5_FBgn0016694:4;Name=Pdp1-in;Parent=FBtr0076775,FBtr0076776,FBtr0076777,FBtr0076780,FBtr0076782,FBtr0300499,FBtr0300500;parent_type=mRNA" - - - -	9035	7,810,966 – 7,811,074	+	5	118	77.19	-3.76	0.56	0.999162
6565	dm3.chr3L	7,810,966 – 7,811,074		9036	7,810,966 – 7,811,074	-	5	118	77.19	-5.01	0.60	0.999859
6566	dm3.chr3L	7,822,747 – 7,822,854	- - - - - - - -	9037	7,822,747 – 7,822,854	+	5	107	82.90	-1.64	0.72	0.739683
6567	dm3.chr3L	7,851,387 – 7,851,481	- - - - - - - -	9038	7,851,387 – 7,851,481	+	6	111	67.09	-1.32	0.52	0.846699
6568	dm3.chr3L	7,858,506 – 7,858,597	- - - - - - - -	9039	7,858,506 – 7,858,597	-	6	112	75.07	-1.88	0.45	0.598318
6569	dm3.chr3L	7,861,240 – 7,861,307	- - - - - - - -	9040	7,861,240 – 7,861,307	+	9	76	74.54	-1.56	0.47	0.589485
6570	dm3.chr3L	7,865,084 – 7,865,158	- - - intron="intron;ID=intron_CG32365:2_CG32365:3;Name=CG32365-in;Parent=FBtr0076746;parent_type=mRNA" - - - -	9041	7,865,084 – 7,865,158	+	10	75	92.48	-3.13	0.72	0.974079
6570	dm3.chr3L	7,865,084 – 7,865,158		9042	7,865,084 – 7,865,158	-	10	75	92.48	-2.12	0.87	0.936041
6571	dm3.chr3L	7,866,384 – 7,866,538	- - - intron="intron;ID=intron_CG32365:2_CG32365:3;Name=CG32365-in;Parent=FBtr0076746;parent_type=mRNA" - - - -	9043	7,866,384 – 7,866,499	-	6	120	79.31	-1.78	0.61	0.820168
6571	dm3.chr3L	7,866,384 – 7,866,538		9044	7,866,420 – 7,866,538	-	6	120	83.03	-2.26	0.75	0.974900
6572	dm3.chr3L	7,878,596 – 7,878,730	- - - intron="intron;ID=intron_CG32365:2_CG32365:3;Name=CG32365-in;Parent=FBtr0076746;parent_type=mRNA" - - - -	9045	7,878,596 – 7,878,730	+	6	140	64.94	-1.32	0.44	0.883551
6573	dm3.chr3L	7,884,531 – 7,884,583	- - - intron="intron;ID=intron_CG32365:3_CG32365:4;Name=CG32365-in;Parent=FBtr0076746;parent_type=mRNA" - - - -	9046	7,884,531 – 7,884,583	+	4	52	95.19	-2.03	0.88	0.855274
6573	dm3.chr3L	7,884,531 – 7,884,583		9047	7,884,531 – 7,884,583	-	4	52	95.19	-1.84	0.93	0.897268
6574	dm3.chr3L	7,885,592 – 7,885,716	- - - intron="intron;ID=intron_CG32365:3_CG32365:4;Name=CG32365-in;Parent=FBtr0076746;parent_type=mRNA" - "Noncode_2.0=n205038_u199999_AK083634_mRNAlike\|4.1e-07" "unique_Noncode_2.0=u199999_mRNAlike\|3.6e-07" -	9048	7,885,592 – 7,885,682	-	4	97	83.73	-1.34	0.89	0.817725
				9049	7,885,625 – 7,885,716	+	5	95	73.71	-1.62	0.63	0.917168
				9050	7,885,625 – 7,885,716	-	5	95	73.71	-1.23	0.63	0.722455
6575	dm3.chr3L	7,923,103 – 7,923,204	- - CDS="CDS;ID=CDS_FBgn0024187:6_360;Name=syd-cds;Parent=FBtr0076769,FBtr0300413;parent_type=mRNA" - - - - -	9051	7,923,103 – 7,923,204	+	13	110	73.26	-1.80	0.50	0.979894
6575	dm3.chr3L	7,923,103 – 7,923,204		9052	7,923,103 – 7,923,204	-	13	110	73.26	-1.52	0.40	0.726518
6576	dm3.chr3L	7,929,920 – 7,930,015	- - - - - - - -	9053	7,929,920 – 7,930,015	-	7	96	63.70	-0.90	0.41	0.676428
6577	dm3.chr3L	7,930,068 – 7,930,173	- - - - - - - -	9054	7,930,068 – 7,930,173	+	8	110	63.29	-1.68	0.32	0.728365
6578	dm3.chr3L	7,932,887 – 7,932,981	- - - - - - - -	9055	7,932,887 – 7,932,981	+	12	109	73.91	-1.47	0.57	0.922323
6579	dm3.chr3L	7,948,692 – 7,948,753	- - - - - - - -	9056	7,948,692 – 7,948,753	-	5	67	71.61	-1.82	0.42	0.615354
6580	dm3.chr3L	7,952,047 – 7,952,150	- - - - - - - -	9057	7,952,047 – 7,952,150	-	12	116	73.61	-0.45	0.79	0.703994
6581	dm3.chr3L	7,953,664 – 7,953,715	- - - - - - - -	9058	7,953,664 – 7,953,715	-	5	56	72.76	-2.13	0.93	0.995067
6582	dm3.chr3L	7,972,015 – 7,972,119	- - - - - - - -	9059	7,972,015 – 7,972,119	+	4	104	75.49	-2.07	0.46	0.553229
6582	dm3.chr3L	7,972,015 – 7,972,119	- - - - - - - -	9060	7,972,015 – 7,972,119	-	4	104	75.49	-1.93	0.74	0.966297
6583	dm3.chr3L	7,975,150 – 7,975,245	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9061	7,975,150 – 7,975,245	+	5	95	98.53	-1.44	1.01	0.909568
6584	dm3.chr3L	7,977,379 – 7,977,474	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9062	7,977,379 – 7,977,474	+	5	95	92.30	-1.43	0.98	0.912295
6584	dm3.chr3L	7,977,379 – 7,977,474		9063	7,977,379 – 7,977,474	-	5	95	92.30	-0.72	0.98	0.521721
6585	dm3.chr3L	7,983,351 – 7,983,467	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9064	7,983,351 – 7,983,467	+	5	117	96.55	-1.94	0.95	0.936585
6585	dm3.chr3L	7,983,351 – 7,983,467		9065	7,983,351 – 7,983,467	-	5	117	96.55	-1.35	0.93	0.610985
6586	dm3.chr3L	7,986,063 – 7,986,171	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9066	7,986,063 – 7,986,171	-	4	108	76.08	-1.36	0.70	0.602415
6587	dm3.chr3L	8,008,586 – 8,008,688	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9067	8,008,586 – 8,008,680	+	6	117	84.28	-1.60	0.92	0.941887
6587	dm3.chr3L	8,008,586 – 8,008,688		9068	8,008,593 – 8,008,688	+	6	114	85.17	-1.25	0.89	0.778957
6588	dm3.chr3L	8,009,303 – 8,009,368	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9069	8,009,303 – 8,009,368	+	4	72	91.11	-3.42	0.79	0.992350
6589	dm3.chr3L	8,017,395 – 8,017,540	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9070	8,017,395 – 8,017,540	+	4	165	76.07	-4.39	0.64	0.999714
6589	dm3.chr3L	8,017,395 – 8,017,540		9071	8,017,395 – 8,017,540	-	4	165	76.07	-3.62	0.64	0.999049
6590	dm3.chr3L	8,029,066 – 8,029,135	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9072	8,029,066 – 8,029,135	-	6	69	81.34	-1.90	0.69	0.911606
6591	dm3.chr3L	8,029,873 – 8,030,003	- - - intron="intron;ID=intron_FBgn0011817:4_FBgn0011817:5;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9073	8,029,873 – 8,030,003	+	5	134	83.91	-1.93	0.67	0.681420
6591	dm3.chr3L	8,029,873 – 8,030,003		9074	8,029,873 – 8,030,003	-	5	134	83.91	-2.09	0.62	0.654051
6592	dm3.chr3L	8,033,785 – 8,033,885	- - - intron="intron;ID=intron_FBgn0011817:5_FBgn0011817:6;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9075	8,033,785 – 8,033,885	-	5	109	64.18	-0.78	0.49	0.587782
6593	dm3.chr3L	8,039,121 – 8,039,180	- - - intron="intron;ID=intron_FBgn0011817:6_FBgn0011817:7;Name=nmo-in;Parent=FBtr0076754,FBtr0076755,FBtr0076756,FBtr0076757,FBtr0076758,FBtr0076759;parent_type=mRNA" - - - -	9076	8,039,121 – 8,039,180	+	5	62	72.92	-1.14	0.76	0.894753
6594	dm3.chr3L	8,053,312 – 8,053,410	FBnoncoding="tRNA;ID=FBtr0076744;Name=tRNA:CR32358-RA;Parent=FBgn0052358;Alias=CR32358-RA;Dbxref=FlyBase_Annotation_IDs:CR32358-RA;score_text=Weakly" tRNAscann="Leu_chr3L_trna44" - - "Rfam_10.0=RF00005;tRNA;AASV01042675.1/11-93\|2.9e-38" - - -	9077	8,053,312 – 8,053,410	+	10	99	89.45	-1.43	0.94	0.922476
6594	dm3.chr3L	8,053,312 – 8,053,410		9078	8,053,312 – 8,053,410	-	10	99	89.45	-1.95	0.91	0.972223
6595	dm3.chr3L	8,053,539 – 8,053,638	FBnoncoding="tRNA;ID=FBtr0076743;Name=tRNA:CR32359-RA;Parent=FBgn0052359;Alias=CR32359-RA;Dbxref=FlyBase_Annotation_IDs:CR32359-RA;score_text=Weakly" tRNAscann="Leu_chr3L_trna43" - - "Rfam_10.0=RF00005;tRNA;AASV01042675.1/11-93\|3.0e-38" - - -	9079	8,053,539 – 8,053,638	+	13	113	82.76	-1.51	0.76	0.900144
6595	dm3.chr3L	8,053,539 – 8,053,638		9080	8,053,539 – 8,053,638	-	13	113	82.76	-2.13	0.78	0.986228
6596	dm3.chr3L	8,055,261 – 8,055,356	- - - - - - - -	9081	8,055,261 – 8,055,356	-	8	118	62.05	-1.16	0.37	0.647535
6597	dm3.chr3L	8,058,719 – 8,058,792	- - - intron="intron;ID=intron_FBgn0262579:1_FBgn0262579:2;Name=Ect4-in;Parent=FBtr0304998;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AASV01042675.1/11-93\|1.0e-18" - - -	9082	8,058,719 – 8,058,792	+	11	76	80.98	-1.59	0.74	0.941195
6597	dm3.chr3L	8,058,719 – 8,058,792		9083	8,058,719 – 8,058,792	-	11	76	80.98	-2.34	0.86	0.995714
6598	dm3.chr3L	8,059,093 – 8,059,198	FBnoncoding="tRNA;ID=FBtr0076740;Name=tRNA:CR32362-RA;Parent=FBgn0052362;Alias=CR32362-RA;Dbxref=FlyBase_Annotation_IDs:CR32362-RA;score_text=Weakly" tRNAscann="Leu_chr3L_trna40" - intron="intron;ID=intron_FBgn0262579:1_FBgn0262579:2;Name=Ect4-in;Parent=FBtr0304998;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AASV01042675.1/11-93\|3.2e-38" - - -	9084	8,059,093 – 8,059,198	+	13	107	89.89	-1.44	0.84	0.723089
6598	dm3.chr3L	8,059,093 – 8,059,198		9085	8,059,093 – 8,059,198	-	13	107	89.89	-1.44	0.86	0.779347
6599	dm3.chr3L	8,065,764 – 8,065,920	- - - intron="intron;ID=intron_FBgn0262579:3_FBgn0262579:7;Name=Ect4-in;Parent=FBtr0304998;parent_type=mRNA" - - - -	9086	8,065,764 – 8,065,860	+	7	113	65.88	-1.48	0.36	0.629036
				9087	8,065,764 – 8,065,860	-	7	113	65.88	-1.92	0.37	0.922976
				9088	8,065,825 – 8,065,920	-	6	121	60.98	-1.63	0.30	0.589910
6600	dm3.chr3L	8,078,274 – 8,078,336	- - - intron="intron;ID=intron_FBgn0262579:6_FBgn0262579:7;Name=Ect4-in;Parent=FBtr0304996;parent_type=mRNA" - - - -	9089	8,078,274 – 8,078,336	+	7	68	64.45	-0.77	0.58	0.923153
6601	dm3.chr3L	8,100,154 – 8,100,280	- - - intron="intron;ID=intron_FBgn0262579:20_FBgn0262579:21;Name=Ect4-in;Parent=FBtr0304995;parent_type=mRNA" - - - -	9090	8,100,154 – 8,100,280	+	5	137	78.98	-2.68	0.45	0.878358
6602	dm3.chr3L	8,103,361 – 8,103,505	- - - - - - - -	9091	8,103,361 – 8,103,505	+	6	177	64.04	-1.21	0.42	0.785364
6603	dm3.chr3L	8,149,501 – 8,149,551	- - - intron="intron;ID=intron_FBgn0259916:2_FBgn0259916:1;Name=CG42445-in;Parent=FBtr0300199;parent_type=mRNA" - - - -	9092	8,149,501 – 8,149,551	-	3	51	89.54	-1.60	0.88	0.747420
6604	dm3.chr3L	8,158,556 – 8,158,650	- - - - - - - -	9093	8,158,556 – 8,158,650	+	13	114	75.88	-2.29	0.37	0.806048
6605	dm3.chr3L	8,186,395 – 8,186,488	- - - - - - - -	9094	8,186,395 – 8,186,488	+	12	108	65.22	-0.61	0.53	0.854357
6606	dm3.chr3L	8,197,651 – 8,197,759	- - - - - - - -	9095	8,197,651 – 8,197,759	+	4	120	52.53	-1.59	0.31	0.876097
6607	dm3.chr3L	8,208,795 – 8,208,901	- - CDS="CDS;ID=CDS_FBgn0040832:2_381;Name=CG8012-cds;Parent=FBtr0076699;parent_type=mRNA" - - - - -	9096	8,208,795 – 8,208,901	-	11	116	75.96	-2.17	0.56	0.987615
6608	dm3.chr3L	8,211,758 – 8,211,856	- - CDS="CDS;ID=CDS_FBgn0035858:1_362;Name=CG13674-cds;Parent=FBtr0076719;parent_type=mRNA" - - - - -	9097	8,211,758 – 8,211,856	+	10	111	68.44	-0.96	0.48	0.774494
6608	dm3.chr3L	8,211,758 – 8,211,856		9098	8,211,758 – 8,211,856	-	10	111	68.44	-0.77	0.55	0.843454
6609	dm3.chr3L	8,212,916 – 8,213,009	- - - - - - - -	9099	8,212,916 – 8,213,009	-	6	112	65.77	-0.06	0.76	0.624371
6610	dm3.chr3L	8,214,791 – 8,214,856	- - - - - - - -	9100	8,214,791 – 8,214,856	+	7	67	71.12	-2.22	0.48	0.991769
6611	dm3.chr3L	8,221,624 – 8,221,715	- - - - - - - -	9101	8,221,624 – 8,221,715	-	4	95	77.64	-1.34	0.68	0.531556
6612	dm3.chr3L	8,240,263 – 8,240,354	- - - intron="intron;ID=intron_FBgn0259232:2_FBgn0259232:4;Name=CG42330-in;Parent=FBtr0299840;parent_type=mRNA" - - - -	9102	8,240,263 – 8,240,354	+	6	93	83.90	-1.95	0.60	0.613997
6613	dm3.chr3L	8,241,978 – 8,242,080	- - CDS="CDS;ID=CDS_FBgn0259232:3_381;Name=CG42330-cds;Parent=FBtr0299839,FBtr0299841;parent_type=mRNA" - - - - -	9103	8,241,978 – 8,242,076	+	11	107	80.77	-1.63	0.73	0.919885
				9104	8,241,978 – 8,242,076	-	11	107	80.77	-1.18	0.80	0.829794
				9105	8,241,982 – 8,242,080	+	11	105	79.42	-1.93	0.74	0.979611
				9106	8,241,982 – 8,242,080	-	11	105	79.42	-1.13	0.74	0.772195
6614	dm3.chr3L	8,243,399 – 8,243,506	- - - intron="intron;ID=intron_FBgn0259232:4_FBgn0259232:5;Name=CG42330-in;Parent=FBtr0299840;parent_type=mRNA" - - - -	9107	8,243,399 – 8,243,506	-	6	108	75.83	-1.27	0.55	0.523993
6615	dm3.chr3L	8,254,761 – 8,254,920	- - - intron="intron;ID=intron_FBgn0259232:9_FBgn0259232:10;Name=CG42330-in;Parent=FBtr0299839,FBtr0299840,FBtr0299841;parent_type=mRNA" - - - -	9108	8,254,761 – 8,254,861	+	11	111	75.65	-1.69	0.44	0.710406
6615	dm3.chr3L	8,254,761 – 8,254,920		9109	8,254,822 – 8,254,920	+	12	117	79.88	-2.01	0.49	0.735630
6616	dm3.chr3L	8,256,104 – 8,256,222	- - CDS="CDS;ID=CDS_FBgn0259232:10_381;Name=CG42330-cds;Parent=FBtr0299839,FBtr0299840,FBtr0299841;parent_type=mRNA" - - - - -	9110	8,256,104 – 8,256,222	-	14	118	88.72	-1.73	0.68	0.555983
6617	dm3.chr3L	8,265,247 – 8,265,302	- - - intron="intron;ID=intron_FBgn0259232:18_FBgn0259232:19;Name=CG42330-in;Parent=FBtr0299839,FBtr0299840,FBtr0299841;parent_type=mRNA" - - - -	9111	8,265,247 – 8,265,302	+	5	61	63.92	-0.74	0.52	0.637362
6618	dm3.chr3L	8,270,583 – 8,270,683	- - CDS="CDS;ID=CDS_FBgn0259232:26_381;Name=CG42330-cds;Parent=FBtr0299839,FBtr0299840,FBtr0299841;parent_type=mRNA" - - - - -	9112	8,270,583 – 8,270,683	-	15	100	79.31	-1.87	0.41	0.611632
6619	dm3.chr3L	8,273,350 – 8,273,497	- - CDS="CDS;ID=CDS_FBgn0259232:32_381;Name=CG42330-cds;Parent=FBtr0299839,FBtr0299840,FBtr0299841;parent_type=mRNA" - - - - -	9113	8,273,350 – 8,273,497	-	13	148	88.68	-1.66	0.69	0.515783
6620	dm3.chr3L	8,282,963 – 8,283,053	- - - - - - - -	9114	8,282,963 – 8,283,053	+	5	115	67.38	-1.38	0.42	0.550730
6620	dm3.chr3L	8,282,963 – 8,283,053	- - - - - - - -	9115	8,282,963 – 8,283,053	-	5	115	67.38	-1.49	0.46	0.807912
6621	dm3.chr3L	8,283,299 – 8,283,350	- - - - - - - -	9116	8,283,299 – 8,283,350	+	3	51	97.39	-1.01	1.00	0.700673
6622	dm3.chr3L	8,285,258 – 8,285,349	- - - intron="intron;ID=intron_CG7201:1_CG7201:2;Name=CG7201-in;Parent=FBtr0076716;parent_type=mRNA" - - - -	9117	8,285,258 – 8,285,349	+	7	92	76.25	-2.02	0.51	0.923856
6622	dm3.chr3L	8,285,258 – 8,285,349		9118	8,285,258 – 8,285,349	-	7	92	76.25	-1.38	0.54	0.624896
6623	dm3.chr3L	8,334,132 – 8,334,223	- - - intron="intron;ID=intron_FBgn0011762:1_FBgn0011762:2;Name=DNApol-alpha50-in;Parent=FBtr0076603;parent_type=mRNA" - - - -	9119	8,334,132 – 8,334,223	+	12	108	64.64	-1.55	0.35	0.856485
6624	dm3.chr3L	8,339,279 – 8,339,331	- - - - - - - -	9120	8,339,279 – 8,339,331	+	5	52	95.00	-1.65	0.88	0.644711
6625	dm3.chr3L	8,356,566 – 8,356,689	- - - - - - - -	9121	8,356,566 – 8,356,658	+	9	108	69.47	-1.22	0.48	0.764612
6625	dm3.chr3L	8,356,566 – 8,356,689	- - - - - - - -	9122	8,356,599 – 8,356,689	+	5	90	93.67	-1.48	0.91	0.726872
6626	dm3.chr3L	8,358,667 – 8,358,764	- - - - - - - -	9123	8,358,667 – 8,358,764	+	5	98	85.57	-1.97	0.82	0.933509
6627	dm3.chr3L	8,370,258 – 8,370,353	- - - intron="intron;ID=intron_CG32356:2_CG32356:3;Name=ImpE1-in;Parent=FBtr0076606,FBtr0076607;parent_type=mRNA" - - - -	9124	8,370,258 – 8,370,353	-	6	99	87.89	-1.59	0.76	0.532893
6628	dm3.chr3L	8,372,676 – 8,372,803	- - - intron="intron;ID=intron_CG32356:3_CG32356:8;Name=ImpE1-in;Parent=FBtr0076607;parent_type=mRNA" - - - -	9125	8,372,676 – 8,372,775	+	3	120	67.85	-2.01	0.48	0.739529
6628	dm3.chr3L	8,372,676 – 8,372,803		9126	8,372,706 – 8,372,803	+	3	123	58.97	-1.94	0.51	0.976756
6629	dm3.chr3L	8,391,226 – 8,391,328	- - - - - - - -	9127	8,391,226 – 8,391,328	+	5	106	61.83	-1.21	0.39	0.650375
6630	dm3.chr3L	8,391,998 – 8,392,056	- - - - - - - -	9128	8,391,998 – 8,392,056	-	5	65	81.86	-3.14	0.72	0.995572
6631	dm3.chr3L	8,404,688 – 8,404,833	- - - - - - - -	9129	8,404,688 – 8,404,793	+	5	106	83.89	-1.58	0.85	0.893005
6631	dm3.chr3L	8,404,688 – 8,404,833	- - - - - - - -	9130	8,404,728 – 8,404,833	+	5	106	74.30	-1.07	0.64	0.637744
6632	dm3.chr3L	8,417,454 – 8,417,631	- - - - - - - -	9131	8,417,454 – 8,417,564	+	3	110	94.55	-2.34	0.78	0.715919
				9132	8,417,454 – 8,417,564	-	3	110	94.55	-4.36	0.77	0.997089
				9133	8,417,489 – 8,417,600	+	3	111	90.27	-3.32	0.78	0.989037
				9134	8,417,489 – 8,417,600	-	3	111	90.27	-2.78	0.75	0.935066
				9135	8,417,524 – 8,417,631	+	3	107	90.85	-1.46	0.87	0.554438
6633	dm3.chr3L	8,439,873 – 8,439,975	- - - intron="intron;ID=intron_FBgn0035896:2_FBgn0035896:1;Name=CG6983-in;Parent=FBtr0076659;parent_type=mRNA" - - - -	9136	8,439,873 – 8,439,975	+	6	110	79.22	-2.98	0.36	0.880676
6634	dm3.chr3L	8,441,841 – 8,441,969	- - - intron="intron;ID=intron_FBgn0035896:2_FBgn0035896:1;Name=CG6983-in;Parent=FBtr0076659;parent_type=mRNA" - - - -	9137	8,441,841 – 8,441,936	+	6	109	60.44	-1.04	0.54	0.981847
6634	dm3.chr3L	8,441,841 – 8,441,969		9138	8,441,868 – 8,441,969	+	6	110	70.26	-1.67	0.52	0.939286
6635	dm3.chr3L	8,445,396 – 8,445,492	- - - intron="intron;ID=intron_FBgn0010825:3_FBgn0010825:4;Name=Gug-in;Parent=FBtr0076616,FBtr0076618,FBtr0076619,FBtr0305697,FBtr0305699;parent_type=mRNA" - - - -	9139	8,445,396 – 8,445,492	-	5	97	89.68	-1.76	0.84	0.778621
6636	dm3.chr3L	8,448,011 – 8,448,139	- - - intron="intron;ID=intron_FBgn0010825:3_FBgn0010825:4;Name=Gug-in;Parent=FBtr0076616,FBtr0076618,FBtr0076619,FBtr0305697,FBtr0305699;parent_type=mRNA" - - - -	9140	8,448,011 – 8,448,139	+	4	148	67.77	-1.82	0.52	0.894603
6636	dm3.chr3L	8,448,011 – 8,448,139		9141	8,448,011 – 8,448,139	-	4	148	67.77	-2.31	0.60	0.992160
6637	dm3.chr3L	8,452,519 – 8,452,606	- - - intron="intron;ID=intron_FBgn0010825:3_FBgn0010825:4;Name=Gug-in;Parent=FBtr0076616,FBtr0076618,FBtr0076619,FBtr0305697,FBtr0305699;parent_type=mRNA" - - - -	9142	8,452,519 – 8,452,606	-	5	92	64.37	-2.12	0.26	0.602402
6638	dm3.chr3L	8,453,693 – 8,453,803	- - - intron="intron;ID=intron_FBgn0010825:3_FBgn0010825:4;Name=Gug-in;Parent=FBtr0076616,FBtr0076618,FBtr0076619,FBtr0305697,FBtr0305699;parent_type=mRNA" - - - -	9143	8,453,693 – 8,453,803	+	9	114	72.07	-1.99	0.56	0.992876
6639	dm3.chr3L	8,458,342 – 8,458,432	- - CDS="CDS;ID=CDS_FBgn0010825:6_472;Name=Gug-cds;Parent=FBtr0076619,FBtr0305696,FBtr0305697,FBtr0305698;parent_type=mRNA" - - - - -	9144	8,458,342 – 8,458,432	-	10	104	72.69	-1.33	0.44	0.536007
6640	dm3.chr3L	8,497,036 – 8,497,133	- - - intron="intron;ID=intron_FBgn0262719:7_FBgn0262719:6;Name=CG43163-in;Parent=FBtr0305700;parent_type=mRNA" - - - -	9145	8,497,036 – 8,497,133	-	3	111	56.79	-3.17	0.10	0.520770
6641	dm3.chr3L	8,508,020 – 8,508,101	- - - - - - - -	9146	8,508,020 – 8,508,101	-	5	81	83.46	-2.27	0.72	0.951875
6642	dm3.chr3L	8,520,050 – 8,520,163	- - - intron="intron;ID=intron_CG6817:1_CG6817:2;Name=foi-in;Parent=FBtr0076624;parent_type=mRNA" - - - -	9147	8,520,050 – 8,520,163	+	5	120	84.55	-2.20	0.72	0.909484
6643	dm3.chr3L	8,530,927 – 8,531,024	- - - - - - - -	9148	8,530,927 – 8,531,024	+	5	97	96.08	-1.19	0.93	0.500000
6644	dm3.chr3L	8,531,662 – 8,531,756	- - - - - - - -	9149	8,531,662 – 8,531,756	-	11	106	62.94	-1.16	0.37	0.689045
6645	dm3.chr3L	8,537,147 – 8,537,266	- - - - - - - -	9150	8,537,147 – 8,537,266	-	3	120	69.92	-1.65	0.53	0.584555
6646	dm3.chr3L	8,549,010 – 8,549,061	- - - - - - - -	9151	8,549,010 – 8,549,061	+	4	58	67.28	-1.97	0.83	0.994631
6647	dm3.chr3L	8,563,331 – 8,563,427	- - - intron="intron;ID=intron_FBgn0260442:14_FBgn0260442:15;Name=rhea-in;Parent=FBtr0305211,FBtr0305212;parent_type=mRNA" - - - -	9152	8,563,331 – 8,563,427	+	7	104	61.25	-1.14	0.47	0.954106
6648	dm3.chr3L	8,564,908 – 8,564,985	FBnoncoding="pre_miRNA;ID=FBtr0304250;Name=mir-190-RM;Parent=FBgn0262387;Alias=CR42915-RM;Dbxref=FlyBase_Annotation_IDs:CR42915-RM,miRBase:MI0005808" - - intron="intron;ID=intron_FBgn0260442:17_FBgn0260442:18;Name=rhea-in;Parent=FBtr0076627,FBtr0305210;parent_type=mRNA" "Rfam_10.0=RF00672;mir-190;AAGH01005520.1/1141-1230\|8.3e-35" - - "mirBase_v16=dme-mir-190\|6.6e-39"	9153	8,564,908 – 8,564,985	+	15	78	90.57	-3.00	0.93	0.997168
6648	dm3.chr3L	8,564,908 – 8,564,985		9154	8,564,908 – 8,564,985	-	15	78	90.57	-1.47	0.90	0.858586
6649	dm3.chr3L	8,566,558 – 8,566,648	- - - intron="intron;ID=intron_FBgn0260442:19_FBgn0260442:20;Name=rhea-in;Parent=FBtr0076627,FBtr0305210;parent_type=mRNA" - - - -	9155	8,566,558 – 8,566,648	-	11	102	59.72	-1.29	0.27	0.637809
6650	dm3.chr3L	8,571,429 – 8,571,530	- - - - - - - -	9156	8,571,429 – 8,571,530	-	9	111	64.87	-1.31	0.32	0.533795
6651	dm3.chr3L	8,571,829 – 8,571,885	- - - - - - - -	9157	8,571,829 – 8,571,885	+	7	67	82.54	-1.75	0.62	0.547766
6652	dm3.chr3L	8,574,340 – 8,574,436	- - - intron="intron;ID=intron_FBgn0262508:3_FBgn0262508:4;Name=CG43078-in;Parent=FBtr0304809,FBtr0304810,FBtr0304813;parent_type=mRNA" - - - -	9158	8,574,340 – 8,574,436	+	7	118	69.88	-1.62	0.46	0.908556
6653	dm3.chr3L	8,582,222 – 8,582,328	- - CDS="CDS;ID=CDS_FBgn0262508:9_378;Name=CG43078-cds;Parent=FBtr0304810;parent_type=mRNA" - - - - -	9159	8,582,222 – 8,582,328	+	11	116	66.59	-1.16	0.42	0.866671
6654	dm3.chr3L	8,594,720 – 8,594,875	- - CDS="CDS;ID=CDS_FBgn0017579:3_343;Name=RpL14-cds;Parent=FBtr0076633;parent_type=mRNA" - - - - -	9160	8,594,720 – 8,594,835	+	14	118	75.24	-0.86	0.63	0.865037
				9161	8,594,720 – 8,594,835	-	14	118	75.24	-1.40	0.58	0.960826
				9162	8,594,755 – 8,594,875	-	15	120	80.82	-1.58	0.49	0.581727
6655	dm3.chr3L	8,599,578 – 8,599,674	- - - intron="intron;ID=intron_FBgn0035914:2_FBgn0035914:4;Name=CG6282-in;Parent=FBtr0300194;parent_type=mRNA" - - - -	9163	8,599,578 – 8,599,674	-	7	96	82.18	-1.23	0.74	0.575323
6656	dm3.chr3L	8,602,348 – 8,602,467	- - - intron="intron;ID=intron_FBgn0035914:4_FBgn0035914:5;Name=CG6282-in;Parent=FBtr0300194;parent_type=mRNA" - - - -	9164	8,602,348 – 8,602,467	+	5	120	78.37	-1.57	0.61	0.689457
6657	dm3.chr3L	8,609,501 – 8,609,563	- - - - - - - -	9165	8,609,501 – 8,609,563	-	7	67	78.03	-2.78	0.52	0.983284
6658	dm3.chr3L	8,627,965 – 8,628,017	- - - intron="intron;ID=intron_FBgn0035917:10_FBgn0035917:11;Name=Zasp66-in;Parent=FBtr0089568,FBtr0089567,FBtr0089561,FBtr0089562,FBtr0089563,FBtr0089564,FBtr0089565,FBtr0089566,FBtr0301154,FBtr0301155,FBtr0301156,FBtr0301157,FBtr0301158;parent_type=mRNA" - - - -	9166	8,627,965 – 8,628,017	+	3	52	89.74	-0.39	1.10	0.852272
6659	dm3.chr3L	8,631,216 – 8,631,338	- - CDS="CDS;ID=CDS_FBgn0035917:15_420;Name=Zasp66-cds;Parent=FBtr0089567,FBtr0301156;parent_type=mRNA" - - - - -	9167	8,631,216 – 8,631,311	-	12	116	68.35	-1.46	0.54	0.977672
6659	dm3.chr3L	8,631,216 – 8,631,338		9168	8,631,240 – 8,631,338	-	12	108	66.68	-1.19	0.54	0.986132
6660	dm3.chr3L	8,640,047 – 8,640,140	- - - - - - - -	9169	8,640,047 – 8,640,140	+	9	97	62.33	-1.06	0.35	0.722017
6661	dm3.chr3L	8,664,914 – 8,665,013	- - - - - - - -	9170	8,664,914 – 8,665,013	-	6	99	65.63	-1.71	0.34	0.800706
6662	dm3.chr3L	8,671,697 – 8,671,793	- - - - "Rfam_10.0=RF00437;HLE;X15905.1/1281-1411\|4.5e-37" - - -	9171	8,671,697 – 8,671,793	+	11	110	48.14	-2.61	-0.00	0.757844
6663	dm3.chr3L	8,673,657 – 8,673,771	- - - - - - - -	9172	8,673,657 – 8,673,771	-	6	119	80.13	-1.80	0.60	0.734882
6664	dm3.chr3L	8,685,696 – 8,685,754	- - - - - - - -	9173	8,685,696 – 8,685,754	-	7	63	77.50	-1.59	0.64	0.891104
6665	dm3.chr3L	8,691,121 – 8,691,216	- - - - - - - -	9174	8,691,121 – 8,691,216	-	8	108	76.49	-1.74	0.58	0.881653
6666	dm3.chr3L	8,693,035 – 8,693,096	- - - - - - - -	9175	8,693,035 – 8,693,096	-	4	65	82.35	-1.34	0.93	0.901559
6667	dm3.chr3L	8,693,474 – 8,693,569	- - - - - - - -	9176	8,693,474 – 8,693,569	+	5	96	77.53	-2.40	0.45	0.830352
6668	dm3.chr3L	8,700,660 – 8,700,751	- - - - - - - -	9177	8,700,660 – 8,700,751	+	8	104	74.62	-1.55	0.55	0.798210
6669	dm3.chr3L	8,703,556 – 8,703,647	- - - - - - - -	9178	8,703,556 – 8,703,647	+	7	108	73.56	-1.21	0.62	0.769038
6670	dm3.chr3L	8,706,854 – 8,707,048	- - - - - - - -	9179	8,706,854 – 8,706,965	+	5	114	97.86	-2.23	0.92	0.938130
				9180	8,706,854 – 8,706,965	-	5	114	97.86	-1.72	0.94	0.839243
				9181	8,706,888 – 8,707,005	+	6	117	94.87	-1.97	0.92	0.927855
				9182	8,706,888 – 8,707,005	-	6	117	94.87	-1.53	0.90	0.687800
				9183	8,706,954 – 8,707,048	+	4	94	94.86	-1.97	0.85	0.748385
				9184	8,706,954 – 8,707,048	-	4	94	94.86	-1.54	0.94	0.820222
6671	dm3.chr3L	8,710,474 – 8,710,573	- - - - - - - -	9185	8,710,474 – 8,710,573	-	10	111	63.86	-1.79	0.46	0.991377
6672	dm3.chr3L	8,724,075 – 8,724,176	- - - - - - - -	9186	8,724,075 – 8,724,176	+	7	103	79.83	-2.68	0.74	0.994899
6673	dm3.chr3L	8,726,304 – 8,726,398	- - - - - - - -	9187	8,726,304 – 8,726,398	+	5	94	88.06	-1.45	0.85	0.652714
6674	dm3.chr3L	8,729,766 – 8,729,898	- - - intron="intron;ID=intron_CG5939:13_CG5939:8;Name=Prm-in;Parent=FBtr0076595,FBtr0076596;parent_type=mRNA" - - - -	9188	8,729,766 – 8,729,898	-	7	146	55.41	-1.62	0.26	0.807017
6675	dm3.chr3L	8,743,485 – 8,743,580	- - - - - - - -	9189	8,743,485 – 8,743,580	+	8	101	80.59	-2.02	0.63	0.921598
6676	dm3.chr3L	8,749,968 – 8,750,069	- - CDS="CDS;ID=CDS_FBgn0035924:1_437;Name=CG6576-cds;Parent=FBtr0076576;parent_type=mRNA" intron="intron;ID=intron_FBgn0261259:1_FBgn0261259:2;Name=Fhos-in;Parent=FBtr0302087;parent_type=mRNA" - - - -	9190	8,749,968 – 8,750,069	+	6	119	69.18	-2.40	0.44	0.983263
6676	dm3.chr3L	8,749,968 – 8,750,069		9191	8,749,968 – 8,750,069	-	6	119	69.18	-1.44	0.67	0.976312
6677	dm3.chr3L	8,763,630 – 8,763,737	- - - intron="intron;ID=intron_FBgn0261259:4_FBgn0261259:5;Name=Fhos-in;Parent=FBtr0302584,FBtr0302583,FBtr0302085,FBtr0302086;parent_type=mRNA" - - - -	9192	8,763,630 – 8,763,737	+	10	119	59.80	-0.77	0.34	0.525020
6678	dm3.chr3L	8,767,744 – 8,767,841	- - - intron="intron;ID=intron_FBgn0261259:4_FBgn0261259:5;Name=Fhos-in;Parent=FBtr0302584,FBtr0302583,FBtr0302085,FBtr0302086;parent_type=mRNA" - - - -	9193	8,767,744 – 8,767,841	+	10	116	67.90	-1.18	0.52	0.865002
6679	dm3.chr3L	8,777,346 – 8,777,427	- - - intron="intron;ID=intron_FBgn0261259:6_FBgn0261259:7;Name=Fhos-in;Parent=FBtr0302584,FBtr0302583,FBtr0302085,FBtr0302086,FBtr0302087;parent_type=mRNA" - - - -	9194	8,777,346 – 8,777,427	+	5	83	93.89	-2.39	0.93	0.979569
6679	dm3.chr3L	8,777,346 – 8,777,427		9195	8,777,346 – 8,777,427	-	5	83	93.89	-2.56	0.90	0.978973
6680	dm3.chr3L	8,822,589 – 8,822,691	- - - intron="intron;ID=intron_FBgn0011577:1_FBgn0011577:2;Name=dally-in;Parent=FBtr0076583,FBtr0305901;parent_type=mRNA" - - - -	9196	8,822,589 – 8,822,691	+	11	109	76.62	-2.31	0.48	0.972259
6681	dm3.chr3L	8,824,194 – 8,824,295	- - - intron="intron;ID=intron_FBgn0011577:1_FBgn0011577:2;Name=dally-in;Parent=FBtr0076583,FBtr0305901;parent_type=mRNA" - - - -	9197	8,824,194 – 8,824,295	-	6	106	88.18	-1.35	0.83	0.535832
6682	dm3.chr3L	8,834,884 – 8,834,939	- - - intron="intron;ID=intron_FBgn0011577:1_FBgn0011577:2;Name=dally-in;Parent=FBtr0076583,FBtr0305901;parent_type=mRNA" - - - -	9198	8,834,884 – 8,834,939	-	4	55	87.27	-1.51	0.86	0.751985
6683	dm3.chr3L	8,838,476 – 8,838,548	- - - intron="intron;ID=intron_FBgn0011577:1_FBgn0011577:2;Name=dally-in;Parent=FBtr0076583,FBtr0305901;parent_type=mRNA" - - - -	9199	8,838,476 – 8,838,548	+	5	72	84.03	-1.49	0.72	0.500000
6684	dm3.chr3L	8,846,143 – 8,846,246	- - - intron="intron;ID=intron_FBgn0011577:1_FBgn0011577:2;Name=dally-in;Parent=FBtr0076583,FBtr0305901;parent_type=mRNA" - - - -	9200	8,846,143 – 8,846,246	-	11	115	62.91	-1.12	0.35	0.596146
6685	dm3.chr3L	8,864,167 – 8,864,268	- - - intron="intron;ID=intron_FBgn0011577:1_FBgn0011577:2;Name=dally-in;Parent=FBtr0076583,FBtr0305901;parent_type=mRNA" - - - -	9201	8,864,167 – 8,864,268	+	4	102	75.85	-2.33	0.55	0.912513
6686	dm3.chr3L	8,872,597 – 8,872,691	- - - intron="intron;ID=intron_FBgn0011577:2_FBgn0011577:3;Name=dally-in;Parent=FBtr0076583,FBtr0305901;parent_type=mRNA" - - - -	9202	8,872,597 – 8,872,691	+	9	116	68.88	-1.41	0.45	0.887861
6687	dm3.chr3L	8,873,118 – 8,873,216	- - - intron="intron;ID=intron_FBgn0011577:2_FBgn0011577:3;Name=dally-in;Parent=FBtr0076583,FBtr0305901;parent_type=mRNA" - - - -	9203	8,873,118 – 8,873,216	-	8	107	71.90	-1.49	0.44	0.786321
6688	dm3.chr3L	8,877,912 – 8,878,003	- - - intron="intron;ID=intron_FBgn0011577:2_FBgn0011577:3;Name=dally-in;Parent=FBtr0076583,FBtr0305901;parent_type=mRNA" - - - -	9204	8,877,912 – 8,878,003	+	5	91	85.38	-1.47	0.76	0.523474
6689	dm3.chr3L	8,888,369 – 8,888,459	- - - - - - - -	9205	8,888,369 – 8,888,459	-	13	102	66.64	-0.78	0.47	0.822485
6690	dm3.chr3L	8,894,163 – 8,894,218	- - - intron="intron;ID=intron_FBgn0035934:16_FBgn0035934:15;Name=TrpA1-in;Parent=FBtr0300208,FBtr0300209;parent_type=mRNA" - - - -	9206	8,894,163 – 8,894,218	+	5	60	67.30	-2.00	0.60	0.995368
6691	dm3.chr3L	8,905,233 – 8,905,315	- - - - - - - -	9207	8,905,233 – 8,905,315	+	8	86	66.19	-0.74	0.49	0.723672
6691	dm3.chr3L	8,905,233 – 8,905,315	- - - - - - - -	9208	8,905,233 – 8,905,315	-	8	86	66.19	-1.02	0.50	0.903526
6692	dm3.chr3L	8,917,547 – 8,917,639	- - - intron="intron;ID=intron_CG4999:2_CG4999:3;Name=Tsp66E-in;Parent=FBtr0076506,FBtr0076507,FBtr0076508;parent_type=mRNA" - - - -	9209	8,917,547 – 8,917,639	+	4	98	61.26	-0.75	0.51	0.672440
6693	dm3.chr3L	8,924,032 – 8,924,085	- - - - - - - -	9210	8,924,032 – 8,924,085	+	7	53	74.12	-2.12	0.57	0.992745
6694	dm3.chr3L	8,935,039 – 8,935,108	- - - intron="intron;ID=intron_FBgn0262573:13_FBgn0262573:8;Name=orb2-in;Parent=FBtr0304941,FBtr0304942,FBtr0304943;parent_type=mRNA" - - - -	9211	8,935,039 – 8,935,108	-	5	82	87.97	-2.31	0.63	0.604764
6695	dm3.chr3L	8,947,753 – 8,947,817	- - - - - - - -	9212	8,947,753 – 8,947,817	+	7	66	58.83	-1.36	0.32	0.867792
6695	dm3.chr3L	8,947,753 – 8,947,817	- - - - - - - -	9213	8,947,753 – 8,947,817	-	7	66	58.83	-1.43	0.27	0.709087
6696	dm3.chr3L	8,954,277 – 8,954,394	- - - - - - - -	9214	8,954,277 – 8,954,394	+	5	117	67.26	-1.39	0.46	0.716726
6696	dm3.chr3L	8,954,277 – 8,954,394	- - - - - - - -	9215	8,954,277 – 8,954,394	-	5	117	67.26	-1.10	0.51	0.662707
6697	dm3.chr3L	8,961,555 – 8,961,701	- - - - - - - -	9216	8,961,555 – 8,961,701	+	5	147	88.23	-2.14	0.75	0.835569
6698	dm3.chr3L	8,987,586 – 8,987,689	- - CDS="CDS;ID=CDS_FBgn0016070:7_381;Name=smg-cds;Parent=FBtr0076549,FBtr0076551;parent_type=mRNA" - - - - -	9217	8,987,586 – 8,987,689	+	10	107	66.88	-0.88	0.41	0.594628
6698	dm3.chr3L	8,987,586 – 8,987,689		9218	8,987,586 – 8,987,689	-	10	107	66.88	-1.10	0.36	0.527368
6699	dm3.chr3L	9,031,178 – 9,031,272	- - - - - - - -	9219	9,031,178 – 9,031,272	-	10	104	84.75	-2.44	0.81	0.989531
6700	dm3.chr3L	9,042,371 – 9,042,491	- - CDS="CDS;ID=CDS_FBgn0000116:1_307;Name=Argk-cds;Parent=FBtr0076544;parent_type=mRNA" - - - - -	9220	9,042,371 – 9,042,491	-	15	120	87.74	-2.25	0.57	0.670214
6701	dm3.chr3L	9,042,531 – 9,042,651	- - CDS="CDS;ID=CDS_FBgn0000116:1_369;Name=Argk-cds;Parent=FBtr0112792;parent_type=mRNA" - - - - -	9221	9,042,531 – 9,042,651	-	15	120	87.25	-2.05	0.67	0.821615
6702	dm3.chr3L	9,057,785 – 9,057,884	- - - intron="intron;ID=intron_FBgn0000116:8_FBgn0000116:7;Name=Argk-in;Parent=FBtr0076543,FBtr0112791;parent_type=mRNA" - - - -	9222	9,057,785 – 9,057,880	-	5	102	87.49	-2.46	0.86	0.981615
6702	dm3.chr3L	9,057,785 – 9,057,884		9223	9,057,788 – 9,057,884	-	5	103	87.61	-2.10	0.84	0.937431
6703	dm3.chr3L	9,058,179 – 9,058,282	- - - intron="intron;ID=intron_FBgn0000116:8_FBgn0000116:7;Name=Argk-in;Parent=FBtr0076543,FBtr0112791;parent_type=mRNA" - - - -	9224	9,058,179 – 9,058,282	-	4	112	63.95	-1.53	0.37	0.611958
6704	dm3.chr3L	9,064,828 – 9,064,945	- - CDS="CDS;ID=CDS_CG4911:2_295;Name=CG4911-cds;Parent=FBtr0076542;parent_type=mRNA" - - - - -	9225	9,064,828 – 9,064,945	+	12	118	78.69	-1.49	0.50	0.555856
6705	dm3.chr3L	9,067,876 – 9,067,982	- - CDS="CDS;ID=CDS_FBgn0023479:1_407;Name=Tequila-cds;Parent=FBtr0076525;parent_type=mRNA" - - - - -	9226	9,067,876 – 9,067,982	+	7	116	63.70	-1.00	0.46	0.873056
6705	dm3.chr3L	9,067,876 – 9,067,982		9227	9,067,876 – 9,067,982	-	7	116	63.70	-0.78	0.51	0.879923
6706	dm3.chr3L	9,070,369 – 9,070,425	- - - intron="intron;ID=intron_FBgn0023479:7_FBgn0023479:9;Name=Tequila-in;Parent=FBtr0301910;parent_type=mRNA" - - - -	9228	9,070,369 – 9,070,425	+	6	57	74.91	-0.97	0.82	0.881513
6706	dm3.chr3L	9,070,369 – 9,070,425		9229	9,070,369 – 9,070,425	-	6	57	74.91	-1.04	0.74	0.835657
6707	dm3.chr3L	9,077,330 – 9,077,421	- - - intron="intron;ID=intron_FBgn0023479:7_FBgn0023479:9;Name=Tequila-in;Parent=FBtr0301910;parent_type=mRNA" - - - -	9230	9,077,330 – 9,077,421	+	3	92	54.18	-0.72	0.49	0.653299
6707	dm3.chr3L	9,077,330 – 9,077,421		9231	9,077,330 – 9,077,421	-	3	92	54.18	-1.56	0.41	0.912997
6708	dm3.chr3L	9,079,893 – 9,080,004	- - CDS="CDS;ID=CDS_FBgn0023479:13_408;Name=Tequila-cds;Parent=FBtr0301910;parent_type=mRNA" - - - - -	9232	9,079,893 – 9,080,004	+	3	111	81.08	-2.08	0.76	0.910035
6708	dm3.chr3L	9,079,893 – 9,080,004		9233	9,079,893 – 9,080,004	-	3	111	81.08	-2.71	0.82	0.991371
6709	dm3.chr3L	9,110,633 – 9,110,786	- - - intron="intron;ID=intron_FBgn0011206:12_FBgn0011206:11;Name=bol-in;Parent=FBtr0076540,FBtr0076541,FBtr0300462;parent_type=mRNA" - - - -	9234	9,110,633 – 9,110,709	-	4	79	90.32	-2.22	0.84	0.922103
6709	dm3.chr3L	9,110,633 – 9,110,786		9235	9,110,709 – 9,110,786	+	8	82	70.29	-1.71	0.39	0.829383
6710	dm3.chr3L	9,112,586 – 9,112,680	- - - intron="intron;ID=intron_FBgn0011206:12_FBgn0011206:11;Name=bol-in;Parent=FBtr0076540,FBtr0076541,FBtr0300462;parent_type=mRNA" - - - -	9236	9,112,586 – 9,112,680	+	3	95	75.75	-1.91	0.71	0.873603
6710	dm3.chr3L	9,112,586 – 9,112,680		9237	9,112,586 – 9,112,680	-	3	95	75.75	-2.12	0.62	0.822951
6711	dm3.chr3L	9,114,483 – 9,114,622	- - - intron="intron;ID=intron_FBgn0011206:12_FBgn0011206:11;Name=bol-in;Parent=FBtr0076540,FBtr0076541,FBtr0300462;parent_type=mRNA" - - - -	9238	9,114,483 – 9,114,622	+	8	162	74.36	-1.93	0.48	0.842676
6712	dm3.chr3L	9,117,319 – 9,117,410	- - - intron="intron;ID=intron_FBgn0011206:14_FBgn0011206:12;Name=bol-in;Parent=FBtr0076540,FBtr0076541;parent_type=mRNA" - - - -	9239	9,117,319 – 9,117,410	-	8	105	68.39	-1.90	0.44	0.967111
6713	dm3.chr3L	9,127,415 – 9,127,479	- - - - - - - -	9240	9,127,415 – 9,127,479	-	5	64	99.06	-1.89	0.97	0.930206
6714	dm3.chr3L	9,136,759 – 9,136,859	- - CDS="CDS;ID=CDS_CG4641:2_286;Name=CG4641-cds;Parent=FBtr0076533;parent_type=mRNA" - - - - -	9241	9,136,759 – 9,136,859	-	13	112	83.02	-1.39	0.69	0.717579
6715	dm3.chr3L	9,146,308 – 9,146,406	- - - intron="intron;ID=intron_CG10537:7_CG10537:8;Name=Rdl-in;Parent=FBtr0076534,FBtr0076536;parent_type=mRNA" - - - -	9242	9,146,308 – 9,146,406	+	8	109	58.10	-2.82	0.84	0.999796
6715	dm3.chr3L	9,146,308 – 9,146,406		9243	9,146,308 – 9,146,406	-	8	109	58.10	-4.79	0.98	0.993579
6716	dm3.chr3L	9,162,491 – 9,162,584	- - - intron="intron;ID=intron_CG10537:2_CG10537:13;Name=Rdl-in;Parent=FBtr0076536;parent_type=mRNA" - - - -	9244	9,162,491 – 9,162,584	-	5	94	96.79	-1.65	0.89	0.625910
6717	dm3.chr3L	9,164,776 – 9,164,868	- - - intron="intron;ID=intron_CG10537:1_CG10537:2;Name=Rdl-in;Parent=FBtr0076534,FBtr0076535,FBtr0076536;parent_type=mRNA" - - - -	9245	9,164,776 – 9,164,868	+	10	103	83.26	-1.33	0.71	0.512964
6717	dm3.chr3L	9,164,776 – 9,164,868		9246	9,164,776 – 9,164,868	-	10	103	83.26	-2.16	0.51	0.583869
6718	dm3.chr3L	9,178,897 – 9,178,990	- - - - - - - -	9247	9,178,897 – 9,178,990	+	8	104	70.74	-1.87	0.39	0.857990
6719	dm3.chr3L	9,180,442 – 9,180,532	- - - - - - - -	9248	9,180,442 – 9,180,532	+	8	98	92.66	-1.87	0.78	0.528794
6720	dm3.chr3L	9,182,544 – 9,182,640	- - - - - - - -	9249	9,182,544 – 9,182,640	-	7	97	84.88	-3.47	0.83	0.998742
6721	dm3.chr3L	9,184,063 – 9,184,159	- - - - - - - -	9250	9,184,063 – 9,184,159	+	10	106	73.49	-1.66	0.41	0.681527
6722	dm3.chr3L	9,186,290 – 9,186,382	- - - - - - - -	9251	9,186,290 – 9,186,382	+	5	106	75.15	-2.10	0.64	0.973224
6722	dm3.chr3L	9,186,290 – 9,186,382	- - - - - - - -	9252	9,186,290 – 9,186,382	-	5	106	75.15	-1.45	0.59	0.651270
6723	dm3.chr3L	9,186,671 – 9,186,792	- - - - - - - -	9253	9,186,671 – 9,186,761	-	8	90	80.48	-1.13	0.68	0.517206
6723	dm3.chr3L	9,186,671 – 9,186,792	- - - - - - - -	9254	9,186,684 – 9,186,792	-	9	112	88.50	-1.65	0.86	0.877991
6724	dm3.chr3L	9,201,640 – 9,201,714	- - - - - - - -	9255	9,201,640 – 9,201,714	-	7	80	75.76	-0.84	0.65	0.586307
6725	dm3.chr3L	9,211,000 – 9,211,055	- - - - - - - -	9256	9,211,000 – 9,211,055	-	8	60	90.79	-2.04	0.84	0.898664
6726	dm3.chr3L	9,212,205 – 9,212,312	- - - - - - - -	9257	9,212,205 – 9,212,312	-	6	117	78.14	-2.39	0.59	0.973284
6727	dm3.chr3L	9,213,090 – 9,213,185	- - - - - - - -	9258	9,213,090 – 9,213,185	+	10	97	89.83	-2.70	0.68	0.934866
6727	dm3.chr3L	9,213,090 – 9,213,185	- - - - - - - -	9259	9,213,090 – 9,213,185	-	10	97	89.83	-2.65	0.63	0.862686
6728	dm3.chr3L	9,222,585 – 9,222,686	- - - - - - - -	9260	9,222,585 – 9,222,686	-	5	103	72.20	-1.48	0.58	0.889025
6729	dm3.chr3L	9,228,284 – 9,228,345	- - - - - - - -	9261	9,228,284 – 9,228,345	-	5	62	91.86	-2.21	0.71	0.567054
6730	dm3.chr3L	9,241,526 – 9,241,588	- - - - - - - -	9262	9,241,526 – 9,241,588	+	6	62	69.47	-1.14	0.54	0.692771
6731	dm3.chr3L	9,244,603 – 9,244,657	- - - - - - - -	9263	9,244,603 – 9,244,657	-	6	63	88.30	-1.96	0.86	0.928383
6732	dm3.chr3L	9,259,285 – 9,259,357	- - - intron="intron;ID=intron_FBgn0260235:5_FBgn0260235:6;Name=CG42509-in;Parent=FBtr0300644;parent_type=mRNA" - - - -	9264	9,259,285 – 9,259,357	+	7	89	68.18	-2.40	0.25	0.624816
6733	dm3.chr3L	9,286,631 – 9,286,728	- - - - - - - -	9265	9,286,631 – 9,286,728	+	8	107	76.21	-1.58	0.66	0.938858
6734	dm3.chr3L	9,287,961 – 9,288,024	- - - - - - - -	9266	9,287,961 – 9,288,024	+	5	63	86.83	-2.46	0.79	0.970811
6734	dm3.chr3L	9,287,961 – 9,288,024	- - - - - - - -	9267	9,287,961 – 9,288,024	-	5	63	86.83	-3.02	0.86	0.995996
6735	dm3.chr3L	9,289,375 – 9,289,477	- - - - - - - -	9268	9,289,375 – 9,289,477	+	7	109	91.59	-1.50	0.83	0.521515
6736	dm3.chr3L	9,291,151 – 9,291,286	- - - - - - - -	9269	9,291,151 – 9,291,250	+	5	106	72.59	-1.72	0.46	0.641786
6736	dm3.chr3L	9,291,151 – 9,291,286	- - - - - - - -	9270	9,291,182 – 9,291,286	-	6	104	69.63	-1.91	0.49	0.980628
6737	dm3.chr3L	9,294,876 – 9,294,973	- - - - - - - -	9271	9,294,876 – 9,294,966	+	11	97	91.10	-2.68	0.71	0.925799
				9272	9,294,876 – 9,294,966	-	11	97	91.10	-3.25	0.79	0.993186
				9273	9,294,880 – 9,294,973	-	11	101	90.50	-2.39	0.72	0.866043
6738	dm3.chr3L	9,297,102 – 9,297,193	- - - - - - - -	9274	9,297,102 – 9,297,193	+	6	91	77.10	-1.19	0.71	0.761345
6739	dm3.chr3L	9,304,566 – 9,304,660	- - - - - - - -	9275	9,304,566 – 9,304,660	-	6	97	70.32	-1.87	0.44	0.777446
6740	dm3.chr3L	9,316,902 – 9,317,017	- - - - - - - -	9276	9,316,902 – 9,317,017	+	5	116	87.73	-1.78	0.76	0.645037
6741	dm3.chr3L	9,325,805 – 9,325,918	- - - - - - - -	9277	9,325,805 – 9,325,918	-	11	120	84.75	-1.35	0.71	0.500000
6742	dm3.chr3L	9,342,398 – 9,342,488	- - - - - - - -	9278	9,342,398 – 9,342,488	+	8	114	71.03	-1.80	0.53	0.945399
6742	dm3.chr3L	9,342,398 – 9,342,488	- - - - - - - -	9279	9,342,398 – 9,342,488	-	8	114	71.03	-2.10	0.41	0.874191
6743	dm3.chr3L	9,353,558 – 9,353,688	- - - - - - - -	9280	9,353,558 – 9,353,661	-	5	103	91.80	-1.92	0.76	0.500000
6743	dm3.chr3L	9,353,558 – 9,353,688	- - - - - - - -	9281	9,353,583 – 9,353,688	-	5	105	91.85	-2.03	0.78	0.659339
6744	dm3.chr3L	9,366,940 – 9,367,015	- - - - - - - -	9282	9,366,940 – 9,367,015	-	6	76	94.42	-1.97	0.82	0.686438
6745	dm3.chr3L	9,368,362 – 9,368,453	- - - - - - - -	9283	9,368,362 – 9,368,453	+	6	96	72.01	-0.92	0.56	0.500000
6746	dm3.chr3L	9,390,190 – 9,390,300	- - - intron="intron;ID=intron_CG4080:1_CG4080:2;Name=CG4080-in;Parent=FBtr0076494;parent_type=mRNA" - - - -	9284	9,390,190 – 9,390,300	+	5	110	68.33	-2.25	0.37	0.888239
6747	dm3.chr3L	9,395,401 – 9,395,504	- - - - - - - -	9285	9,395,401 – 9,395,504	-	11	106	59.77	-0.57	0.39	0.592568
6748	dm3.chr3L	9,403,107 – 9,403,233	- - - - - - - -	9286	9,403,107 – 9,403,204	+	6	97	78.14	-2.22	0.79	0.993266
				9287	9,403,107 – 9,403,204	-	6	97	78.14	-2.28	0.58	0.970526
				9288	9,403,139 – 9,403,233	+	6	94	84.68	-1.58	0.77	0.768899
6749	dm3.chr3L	9,405,507 – 9,405,598	- - - - - - - -	9289	9,405,507 – 9,405,598	+	12	110	67.08	-2.14	0.45	0.993197
6750	dm3.chr3L	9,407,342 – 9,407,398	- - CDS="CDS;ID=CDS_CG3967:8_313;Name=CG3967-cds;Parent=FBtr0076481,FBtr0076482,FBtr0076483,FBtr0076484;parent_type=mRNA" - - - - -	9290	9,407,342 – 9,407,398	-	14	56	81.86	-1.50	0.66	0.809069
6751	dm3.chr3L	9,450,948 – 9,451,039	- - - - - - - -	9291	9,450,948 – 9,451,039	+	7	108	64.54	-1.25	0.39	0.613530
6751	dm3.chr3L	9,450,948 – 9,451,039	- - - - - - - -	9292	9,450,948 – 9,451,039	-	7	108	64.54	-1.60	0.39	0.864769
6752	dm3.chr3L	9,470,578 – 9,470,696	- - CDS="CDS;ID=CDS_CG3654:1_322;Name=Jarid2-cds;Parent=FBtr0076468;parent_type=mRNA" - - - - -	9293	9,470,578 – 9,470,696	+	9	120	79.81	-2.93	0.63	0.995994
6752	dm3.chr3L	9,470,578 – 9,470,696		9294	9,470,578 – 9,470,696	-	9	120	79.81	-2.25	0.54	0.910621
6753	dm3.chr3L	9,472,589 – 9,472,703	- - CDS="CDS;ID=CDS_CG3654:2_322;Name=Jarid2-cds;Parent=FBtr0076468;parent_type=mRNA" - - - - -	9295	9,472,589 – 9,472,703	+	9	114	78.39	-1.78	0.46	0.545615
6754	dm3.chr3L	9,490,627 – 9,490,725	- - - intron="intron;ID=intron_CG3424:8_CG3424:9;Name=path-in;Parent=FBtr0076428;parent_type=mRNA" - - - -	9296	9,490,627 – 9,490,725	+	8	107	77.57	-2.10	0.56	0.936621
6754	dm3.chr3L	9,490,627 – 9,490,725		9297	9,490,627 – 9,490,725	-	8	107	77.57	-2.16	0.50	0.883658
6755	dm3.chr3L	9,527,162 – 9,527,218	- - - - - - - -	9298	9,527,162 – 9,527,218	+	6	57	74.91	-0.97	0.82	0.881513
6755	dm3.chr3L	9,527,162 – 9,527,218	- - - - - - - -	9299	9,527,162 – 9,527,218	-	6	57	74.91	-1.04	0.74	0.835657
6756	dm3.chr3L	9,534,181 – 9,534,271	- - - - - - - -	9300	9,534,181 – 9,534,271	+	4	91	65.60	-0.95	0.74	0.922332
6756	dm3.chr3L	9,534,181 – 9,534,271	- - - - - - - -	9301	9,534,181 – 9,534,271	-	4	91	65.60	-1.04	0.65	0.882525
6757	dm3.chr3L	9,545,338 – 9,545,438	- - - intron="intron;ID=intron_FBgn0261555:1_FBgn0261555:2;Name=CG42673-in;Parent=FBtr0302709,FBtr0302711;parent_type=mRNA" - - - -	9302	9,545,338 – 9,545,438	+	4	108	85.74	-1.70	0.80	0.724927
6758	dm3.chr3L	9,551,285 – 9,551,416	- - - intron="intron;ID=intron_FBgn0261555:2_FBgn0261555:3;Name=CG42673-in;Parent=FBtr0302709,FBtr0302711;parent_type=mRNA" - - - -	9303	9,551,285 – 9,551,389	-	7	113	70.76	-1.86	0.45	0.943652
6758	dm3.chr3L	9,551,285 – 9,551,416		9304	9,551,314 – 9,551,416	-	5	111	70.53	-1.56	0.58	0.933818
6759	dm3.chr3L	9,553,232 – 9,553,328	- - - intron="intron;ID=intron_FBgn0261555:2_FBgn0261555:3;Name=CG42673-in;Parent=FBtr0302709,FBtr0302711;parent_type=mRNA" - - - -	9305	9,553,232 – 9,553,328	+	6	97	76.97	-1.97	0.50	0.824992
6760	dm3.chr3L	9,570,226 – 9,570,342	- - - intron="intron;ID=intron_FBgn0261555:3_FBgn0261555:4;Name=CG42673-in;Parent=FBtr0302709,FBtr0302711;parent_type=mRNA" - - - -	9306	9,570,226 – 9,570,342	-	4	119	50.28	-2.18	0.17	0.769843
6761	dm3.chr3L	9,573,599 – 9,573,691	- - - intron="intron;ID=intron_FBgn0261555:3_FBgn0261555:4;Name=CG42673-in;Parent=FBtr0302709,FBtr0302711;parent_type=mRNA" - - - -	9307	9,573,599 – 9,573,691	+	4	104	50.66	-1.40	0.28	0.601584
6762	dm3.chr3L	9,582,364 – 9,582,459	- - - intron="intron;ID=intron_FBgn0261555:8_FBgn0261555:9;Name=CG42673-in;Parent=FBtr0302709,FBtr0302710,FBtr0302711;parent_type=mRNA" - - - -	9308	9,582,364 – 9,582,459	+	5	108	84.42	-1.68	0.73	0.616701
6763	dm3.chr3L	9,597,722 – 9,597,812	- - CDS="CDS;ID=CDS_FBgn0036017:5_455;Name=CG3280-cds;Parent=FBtr0304601,FBtr0304602;parent_type=mRNA" - - - - -	9309	9,597,722 – 9,597,812	+	13	115	78.56	-1.58	0.53	0.533067
6764	dm3.chr3L	9,598,213 – 9,598,303	- - - intron="intron;ID=intron_FBgn0036017:6_FBgn0036017:7;Name=CG3280-in;Parent=FBtr0304601,FBtr0304602;parent_type=mRNA" - - - -	9310	9,598,213 – 9,598,303	+	9	95	76.66	-1.04	0.71	0.855836
6765	dm3.chr3L	9,619,003 – 9,619,117	- - CDS="CDS;ID=CDS_CG3335:2_304;Name=CG3335-cds;Parent=FBtr0076383;parent_type=mRNA" - - - - -	9311	9,619,003 – 9,619,117	+	15	120	70.73	-1.84	0.28	0.554431
6766	dm3.chr3L	9,620,797 – 9,620,906	- - CDS="CDS;ID=CDS_FBgn0036019:3_397;Name=Or67b-cds;Parent=FBtr0076420;parent_type=mRNA" - - - - -	9312	9,620,797 – 9,620,906	-	8	116	66.46	-0.71	0.52	0.835351
6767	dm3.chr3L	9,628,506 – 9,628,609	- - - intron="intron;ID=intron_FBgn0016081:9_FBgn0016081:8;Name=fry-in;Parent=FBtr0076417,FBtr0110843,FBtr0301435,FBtr0306240,FBtr0306241,FBtr0306242;parent_type=mRNA" - - - -	9313	9,628,506 – 9,628,609	+	7	111	66.91	-1.50	0.35	0.649283
6767	dm3.chr3L	9,628,506 – 9,628,609		9314	9,628,506 – 9,628,609	-	7	111	66.91	-1.25	0.44	0.835948
6768	dm3.chr3L	9,640,704 – 9,640,773	- - - intron="intron;ID=intron_FBgn0053696:1_FBgn0053696:2;Name=CG33696-in;Parent=FBtr0091684;parent_type=mRNA" - - - -	9315	9,640,704 – 9,640,773	-	5	69	90.00	-1.40	0.97	0.914148
6769	dm3.chr3L	9,647,690 – 9,647,800	- - - intron="intron;ID=intron_FBgn0053696:6_FBgn0053696:7;Name=CG33696-in;Parent=FBtr0091684;parent_type=mRNA" - - - -	9316	9,647,690 – 9,647,800	+	6	120	65.95	-2.18	0.28	0.565397
6770	dm3.chr3L	9,648,591 – 9,648,693	- - - intron="intron;ID=intron_FBgn0053696:6_FBgn0053696:7;Name=CG33696-in;Parent=FBtr0091684;parent_type=mRNA" - - - -	9317	9,648,591 – 9,648,693	+	7	112	72.13	-1.91	0.37	0.523057
6771	dm3.chr3L	9,661,968 – 9,662,128	- - CDS="CDS;ID=CDS_FBgn0016081:29_477;Name=fry-cds;Parent=FBtr0306242;parent_type=mRNA" - - - - -	9318	9,661,968 – 9,662,088	-	15	120	78.76	-2.00	0.42	0.814574
6771	dm3.chr3L	9,661,968 – 9,662,128		9319	9,662,008 – 9,662,128	-	15	120	80.54	-2.27	0.42	0.804926
6772	dm3.chr3L	9,669,048 – 9,669,142	- - - - - - - -	9320	9,669,048 – 9,669,142	-	7	104	66.55	-1.68	0.39	0.791624
6773	dm3.chr3L	9,689,173 – 9,689,322	- - - - - - - -	9321	9,689,173 – 9,689,322	+	5	161	90.12	-2.55	0.72	0.879152
6773	dm3.chr3L	9,689,173 – 9,689,322	- - - - - - - -	9322	9,689,173 – 9,689,322	-	5	161	90.12	-3.49	0.59	0.966642
6774	dm3.chr3L	9,713,929 – 9,714,034	- - CDS="CDS;ID=CDS_FBgn0261530:2_485;Name=nbs-cds;Parent=FBtr0306039,FBtr0306040;parent_type=mRNA" - - - - -	9323	9,713,929 – 9,714,034	-	12	120	65.90	-1.57	0.29	0.585005
6775	dm3.chr3L	9,714,878 – 9,714,978	- - CDS="CDS;ID=CDS_FBgn0261530:2_485;Name=nbs-cds;Parent=FBtr0306039,FBtr0306040;parent_type=mRNA" - - - - -	9324	9,714,878 – 9,714,978	+	7	109	66.95	-1.19	0.39	0.539853
6776	dm3.chr3L	9,728,181 – 9,728,281	- - CDS="CDS;ID=CDS_FBgn0259163:1_338;Name=CG42268-cds;Parent=FBtr0299606,FBtr0299607;parent_type=mRNA" - - - - -	9325	9,728,181 – 9,728,281	+	6	105	79.06	-1.20	0.69	0.557646
6777	dm3.chr3L	9,730,066 – 9,730,168	- - - intron="intron;ID=intron_FBgn0259163:5_FBgn0259163:4;Name=CG42268-in;Parent=FBtr0299606,FBtr0299607,FBtr0301858;parent_type=mRNA" - - - -	9326	9,730,066 – 9,730,168	-	6	102	63.52	-1.23	0.44	0.882597
6778	dm3.chr3L	9,738,465 – 9,738,577	- - - intron="intron;ID=intron_FBgn0259163:9_FBgn0259163:8;Name=CG42268-in;Parent=FBtr0299606,FBtr0299607,FBtr0301858;parent_type=mRNA" - - - -	9327	9,738,465 – 9,738,577	-	11	120	85.26	-1.44	0.72	0.519071
6779	dm3.chr3L	9,740,014 – 9,740,125	- - - intron="intron;ID=intron_FBgn0259163:9_FBgn0259163:8;Name=CG42268-in;Parent=FBtr0299606,FBtr0299607,FBtr0301858;parent_type=mRNA" - - - -	9328	9,740,014 – 9,740,125	+	5	119	76.22	-1.71	0.56	0.629076
6780	dm3.chr3L	9,743,245 – 9,743,325	- - CDS="CDS;ID=CDS_FBgn0259163:13_406;Name=CG42268-cds;Parent=FBtr0301858;parent_type=mRNA" - - - - -	9329	9,743,245 – 9,743,325	+	12	80	70.04	-1.45	0.40	0.895894
6781	dm3.chr3L	9,746,539 – 9,746,659	- - - intron="intron;ID=intron_FBgn0259163:16_FBgn0259163:15;Name=CG42268-in;Parent=FBtr0299606;parent_type=mRNA" - - - -	9330	9,746,539 – 9,746,659	+	5	120	94.92	-1.39	0.93	0.707525
6782	dm3.chr3L	9,749,461 – 9,749,561	- - - intron="intron;ID=intron_FBgn0259163:16_FBgn0259163:15;Name=CG42268-in;Parent=FBtr0299606;parent_type=mRNA" - - - -	9331	9,749,461 – 9,749,561	+	5	100	87.19	-2.32	0.76	0.918347
6783	dm3.chr3L	9,755,281 – 9,755,333	- - - - - - - -	9332	9,755,281 – 9,755,333	+	9	64	65.11	-0.95	0.75	0.983590
6783	dm3.chr3L	9,755,281 – 9,755,333	- - - - - - - -	9333	9,755,281 – 9,755,333	-	9	64	65.11	-0.29	0.64	0.744064
6784	dm3.chr3L	9,786,873 – 9,786,978	- - CDS="CDS;ID=CDS_CG14168:3_313;Name=CG14168-cds;Parent=FBtr0076374;parent_type=mRNA" - - - - -	9334	9,786,873 – 9,786,978	-	6	111	77.16	-1.72	0.67	0.930793
6785	dm3.chr3L	9,788,774 – 9,788,884	- - - intron="intron;ID=intron_CG14168:1_CG14168:2;Name=CG14168-in;Parent=FBtr0076374;parent_type=mRNA" - - - -	9335	9,788,774 – 9,788,884	-	7	113	66.49	-1.46	0.33	0.604957
6786	dm3.chr3L	9,806,583 – 9,806,686	- - - - - - - -	9336	9,806,583 – 9,806,686	+	5	103	93.20	-1.53	0.90	0.723750
6787	dm3.chr3L	9,826,549 – 9,826,645	- - - - - - - -	9337	9,826,549 – 9,826,645	-	8	104	85.13	-4.49	0.67	0.999419
6788	dm3.chr3L	9,834,238 – 9,834,331	- - CDS="CDS;ID=CDS_CG6721:6_305;Name=Gap1-cds;Parent=FBtr0076368;parent_type=mRNA" - - - - -	9338	9,834,238 – 9,834,331	+	11	117	70.92	-1.32	0.49	0.723285
6789	dm3.chr3L	9,838,792 – 9,838,888	- - - intron="intron;ID=intron_CG6721:1_CG6721:2;Name=Gap1-in;Parent=FBtr0076367,FBtr0076368;parent_type=mRNA" - - - -	9339	9,838,792 – 9,838,888	-	3	96	77.74	-1.79	0.76	0.863564
6790	dm3.chr3L	9,841,483 – 9,841,625	- - - intron="intron;ID=intron_CG6721:1_CG6721:2;Name=Gap1-in;Parent=FBtr0076367,FBtr0076368;parent_type=mRNA" - - - -	9340	9,841,483 – 9,841,586	-	7	119	53.60	-1.07	0.44	0.964610
6790	dm3.chr3L	9,841,483 – 9,841,625		9341	9,841,515 – 9,841,625	-	7	113	64.43	-1.54	0.45	0.954428
6791	dm3.chr3L	9,866,381 – 9,866,446	- - - - - - - -	9342	9,866,381 – 9,866,446	+	8	95	50.43	-0.84	0.39	0.845285
6792	dm3.chr3L	9,866,536 – 9,866,633	- - - - - - - -	9343	9,866,536 – 9,866,633	-	7	107	71.61	-1.80	0.63	0.984936
6793	dm3.chr3L	9,868,495 – 9,868,655	- - - - - - - -	9344	9,868,495 – 9,868,586	+	4	91	82.42	-2.44	0.66	0.939828
6793	dm3.chr3L	9,868,495 – 9,868,655	- - - - - - - -	9345	9,868,553 – 9,868,655	+	3	102	91.33	-1.10	0.93	0.535086
6794	dm3.chr3L	9,875,173 – 9,875,264	- - - intron="intron;ID=intron_FBgn0085411:2_FBgn0085411:3;Name=CG34382-in;Parent=FBtr0112620;parent_type=mRNA" - - - -	9346	9,875,173 – 9,875,264	-	9	104	59.93	-1.45	0.45	0.985027
6795	dm3.chr3L	9,879,148 – 9,879,240	- - - intron="intron;ID=intron_FBgn0011836:3_FBgn0011836:2;Name=Taf2-in;Parent=FBtr0076361;parent_type=mRNA" - - - -	9347	9,879,148 – 9,879,240	-	11	100	64.42	-0.04	0.64	0.826666
6796	dm3.chr3L	9,882,337 – 9,882,437	- - - - - - - -	9348	9,882,337 – 9,882,437	+	10	120	70.66	-2.00	0.61	0.993551
6797	dm3.chr3L	9,890,346 – 9,890,448	- - - - - - - -	9349	9,890,346 – 9,890,448	+	7	113	72.45	-1.70	0.44	0.680905
6798	dm3.chr3L	9,893,658 – 9,893,798	- - CDS="CDS;ID=CDS_FBgn0036059:4_370;Name=nudE-cds;Parent=FBtr0113158,FBtr0113159;parent_type=mRNA" - - - - -	9350	9,893,658 – 9,893,798	-	14	140	77.68	-1.92	0.41	0.723714
6799	dm3.chr3L	9,894,962 – 9,895,052	- - - - - - - -	9351	9,894,962 – 9,895,052	-	9	100	81.94	-1.69	0.66	0.768047
6800	dm3.chr3L	9,897,453 – 9,897,525	- - - - - - - -	9352	9,897,453 – 9,897,525	-	6	76	74.38	-1.60	0.50	0.756251
6801	dm3.chr3L	9,898,354 – 9,898,451	- - - - - - - -	9353	9,898,354 – 9,898,451	-	11	109	74.88	-1.52	0.50	0.809295
6802	dm3.chr3L	9,904,849 – 9,904,942	- - - - - - - -	9354	9,904,849 – 9,904,942	+	8	93	85.63	-1.80	0.73	0.808528
6803	dm3.chr3L	9,911,057 – 9,911,162	- - - - - - - -	9355	9,911,057 – 9,911,162	+	5	105	92.46	-2.06	0.75	0.538918
6804	dm3.chr3L	9,912,797 – 9,912,898	- - - - - - - -	9356	9,912,797 – 9,912,898	-	8	109	79.05	-0.97	0.79	0.665393
6805	dm3.chr3L	9,913,917 – 9,914,013	- - - - - - - -	9357	9,913,917 – 9,914,007	-	6	92	66.21	-2.16	0.55	0.997664
6805	dm3.chr3L	9,913,917 – 9,914,013	- - - - - - - -	9358	9,913,917 – 9,914,013	-	6	98	66.45	-2.28	0.50	0.996806
6806	dm3.chr3L	9,916,281 – 9,916,380	- - - - - - - -	9359	9,916,281 – 9,916,380	+	10	116	66.23	-0.71	0.54	0.703101
6807	dm3.chr3L	9,961,566 – 9,961,619	- - - - - - - -	9360	9,961,566 – 9,961,619	+	5	54	75.98	-1.15	0.78	0.853404
6808	dm3.chr3L	9,984,659 – 9,984,749	- - - intron="intron;ID=intron_CG14162:1_CG14162:2;Name=dpr6-in;Parent=FBtr0076353;parent_type=mRNA" - - - -	9361	9,984,659 – 9,984,749	+	4	91	86.74	-2.15	0.70	0.749843
6809	dm3.chr3L	9,987,422 – 9,987,616	- - - intron="intron;ID=intron_CG14162:1_CG14162:2;Name=dpr6-in;Parent=FBtr0076353;parent_type=mRNA" - - - -	9362	9,987,422 – 9,987,540	-	5	120	88.94	-1.68	0.80	0.636371
				9363	9,987,462 – 9,987,579	-	5	120	87.71	-1.85	0.80	0.803644
				9364	9,987,502 – 9,987,613	-	4	116	89.20	-2.45	0.80	0.944041
				9365	9,987,505 – 9,987,616	-	4	116	89.20	-2.16	0.83	0.916807
6810	dm3.chr3L	9,998,983 – 9,999,071	- - - intron="intron;ID=intron_CG14162:2_CG14162:3;Name=dpr6-in;Parent=FBtr0076353;parent_type=mRNA" - - - -	9366	9,998,983 – 9,999,071	-	3	88	80.23	-2.15	0.82	0.968112
6811	dm3.chr3L	10,002,433 – 10,002,525	- - - intron="intron;ID=intron_CG14162:2_CG14162:3;Name=dpr6-in;Parent=FBtr0076353;parent_type=mRNA" - - - -	9367	10,002,433 – 10,002,525	+	11	109	76.01	-1.37	0.59	0.795553
6812	dm3.chr3L	10,003,201 – 10,003,335	- - - intron="intron;ID=intron_CG14162:2_CG14162:3;Name=dpr6-in;Parent=FBtr0076353;parent_type=mRNA" - - - -	9368	10,003,201 – 10,003,316	+	12	120	94.59	-2.57	0.80	0.927131
6812	dm3.chr3L	10,003,201 – 10,003,335		9369	10,003,238 – 10,003,335	+	10	104	90.14	-1.59	0.77	0.500000
6813	dm3.chr3L	10,005,105 – 10,005,204	- - - intron="intron;ID=intron_CG14162:2_CG14162:3;Name=dpr6-in;Parent=FBtr0076353;parent_type=mRNA" - - - -	9370	10,005,105 – 10,005,204	-	11	117	78.51	-2.21	0.42	0.644380
6814	dm3.chr3L	10,008,002 – 10,008,054	- - - intron="intron;ID=intron_CG14162:2_CG14162:3;Name=dpr6-in;Parent=FBtr0076353;parent_type=mRNA" - - - -	9371	10,008,002 – 10,008,054	+	5	56	67.91	-1.14	0.52	0.735224
6815	dm3.chr3L	10,035,591 – 10,035,688	- - - - - - - -	9372	10,035,591 – 10,035,688	+	11	118	86.72	-1.99	0.89	0.971502
6816	dm3.chr3L	10,043,927 – 10,044,020	- - - - - - - -	9373	10,043,927 – 10,044,020	+	11	119	79.35	-1.35	0.63	0.527996
6817	dm3.chr3L	10,049,198 – 10,049,252	- - - - - - - -	9374	10,049,198 – 10,049,252	+	5	54	97.41	-1.38	1.01	0.906238
6818	dm3.chr3L	10,071,781 – 10,071,935	- - - - - - - -	9375	10,071,781 – 10,071,935	+	5	154	64.79	-1.51	0.46	0.939004
6818	dm3.chr3L	10,071,781 – 10,071,935	- - - - - - - -	9376	10,071,781 – 10,071,935	-	5	154	64.79	-1.41	0.47	0.929962
6819	dm3.chr3L	10,075,266 – 10,075,356	- - - - - - - -	9377	10,075,266 – 10,075,356	+	12	110	74.79	-0.59	0.69	0.627532
6820	dm3.chr3L	10,077,988 – 10,078,085	- - - - - - - -	9378	10,077,988 – 10,078,085	+	12	110	93.04	-1.19	0.91	0.586558
6821	dm3.chr3L	10,078,242 – 10,078,353	- - - - - - - -	9379	10,078,242 – 10,078,353	+	9	120	79.12	-1.84	0.47	0.500000
6822	dm3.chr3L	10,096,852 – 10,096,949	- - - - - - - -	9380	10,096,852 – 10,096,949	+	12	122	81.67	-2.20	0.64	0.936339
6823	dm3.chr3L	10,102,339 – 10,102,505	- - - - - - - -	9381	10,102,339 – 10,102,505	+	5	192	78.13	-1.30	0.67	0.552679
6824	dm3.chr3L	10,102,588 – 10,102,638	- - - - - - - -	9382	10,102,588 – 10,102,638	-	3	50	86.67	-0.33	1.05	0.641144
6825	dm3.chr3L	10,110,045 – 10,110,140	- - - - - - - -	9383	10,110,045 – 10,110,140	-	12	112	78.82	-1.13	0.63	0.560935
6826	dm3.chr3L	10,115,126 – 10,115,239	- - - - - - - -	9384	10,115,126 – 10,115,239	+	4	113	97.35	-1.44	0.96	0.783792
6826	dm3.chr3L	10,115,126 – 10,115,239	- - - - - - - -	9385	10,115,126 – 10,115,239	-	4	113	97.35	-1.41	0.97	0.806368
6827	dm3.chr3L	10,135,892 – 10,135,989	- - - - - - - -	9386	10,135,892 – 10,135,989	-	7	98	77.88	-1.14	0.61	0.574564
6828	dm3.chr3L	10,136,431 – 10,136,587	- - - - - - - -	9387	10,136,431 – 10,136,529	+	8	98	66.43	-1.86	0.37	0.939104
				9388	10,136,468 – 10,136,569	+	9	103	86.01	-2.42	0.70	0.936006
				9389	10,136,487 – 10,136,587	+	9	104	88.90	-2.65	0.69	0.924794
6829	dm3.chr3L	10,144,640 – 10,144,693	- - - intron="intron;ID=intron_CG32057:5_CG32057:6;Name=dpr10-in;Parent=FBtr0076308,FBtr0076309,FBtr0076310;parent_type=mRNA" - - - -	9390	10,144,640 – 10,144,693	+	7	56	79.65	-0.59	0.85	0.500000
6830	dm3.chr3L	10,148,840 – 10,148,908	- - - intron="intron;ID=intron_CG32057:3_CG32057:4;Name=dpr10-in;Parent=FBtr0076308,FBtr0076309,FBtr0076310;parent_type=mRNA" - - - -	9391	10,148,840 – 10,148,908	-	9	72	71.20	-0.98	0.49	0.500000
6831	dm3.chr3L	10,169,704 – 10,169,799	- - - - - - - -	9392	10,169,704 – 10,169,799	-	8	99	77.98	-1.05	0.90	0.923120
6832	dm3.chr3L	10,170,179 – 10,170,284	- - - - - - - -	9393	10,170,179 – 10,170,284	-	5	105	90.77	-1.45	0.87	0.623677
6833	dm3.chr3L	10,175,348 – 10,175,456	- - CDS="CDS;ID=CDS_CG32057:2_291;Name=dpr10-cds;Parent=FBtr0076309,FBtr0076310;parent_type=mRNA" - - - - -	9394	10,175,348 – 10,175,456	-	6	115	78.89	-1.44	0.69	0.792837
6834	dm3.chr3L	10,176,223 – 10,176,276	- - - intron="intron;ID=intron_CG32057:10_CG32057:11;Name=dpr10-in;Parent=FBtr0076308;parent_type=mRNA" - - - -	9395	10,176,223 – 10,176,276	+	6	54	82.16	-2.46	0.74	0.986491
6835	dm3.chr3L	10,180,627 – 10,180,733	- - - - - - - -	9396	10,180,627 – 10,180,733	+	12	117	80.18	-1.12	0.65	0.528832
6836	dm3.chr3L	10,181,400 – 10,181,497	- - - - - - - -	9397	10,181,400 – 10,181,497	-	12	105	64.30	-0.99	0.44	0.892087
6837	dm3.chr3L	10,183,731 – 10,183,825	- - - - - - - -	9398	10,183,731 – 10,183,825	+	12	110	74.13	-0.87	0.70	0.862494
6838	dm3.chr3L	10,185,945 – 10,186,017	- - - intron="intron;ID=intron_FBgn0000451:5_FBgn0000451:3;Name=ect-in;Parent=FBtr0076305,FBtr0076307;parent_type=mRNA" - - - -	9399	10,185,945 – 10,186,017	+	8	72	83.43	-1.88	0.74	0.938016
6839	dm3.chr3L	10,190,041 – 10,190,093	- - - intron="intron;ID=intron_FBgn0000451:9_FBgn0000451:8;Name=ect-in;Parent=FBtr0076307;parent_type=mRNA" - - - -	9400	10,190,041 – 10,190,093	+	4	53	89.10	-1.38	0.94	0.848984
6839	dm3.chr3L	10,190,041 – 10,190,093		9401	10,190,041 – 10,190,093	-	4	53	89.10	-1.68	0.79	0.520612
6840	dm3.chr3L	10,194,309 – 10,194,469	- - - intron="intron;ID=intron_FBgn0000451:9_FBgn0000451:8;Name=ect-in;Parent=FBtr0076307;parent_type=mRNA" - - - -	9402	10,194,309 – 10,194,469	-	6	177	64.84	-1.44	0.34	0.592551
6841	dm3.chr3L	10,209,906 – 10,210,023	- - - - - - - -	9403	10,209,906 – 10,210,010	+	12	119	78.23	-2.27	0.35	0.518996
				9404	10,209,906 – 10,210,010	-	12	119	78.23	-2.09	0.61	0.974517
				9405	10,209,933 – 10,210,023	-	12	118	74.02	-1.05	0.72	0.886601
6842	dm3.chr3L	10,211,127 – 10,211,225	- - - - - - - -	9406	10,211,127 – 10,211,225	+	9	107	74.37	-0.98	0.69	0.861864
6843	dm3.chr3L	10,217,130 – 10,217,281	- - CDS="CDS;ID=CDS_CG32056:2_337;Name=scramb1-cds;Parent=FBtr0076301;parent_type=mRNA" - - - - -	9407	10,217,130 – 10,217,241	+	5	111	69.82	-1.23	0.46	0.536519
				9408	10,217,130 – 10,217,241	-	5	111	69.82	-1.24	0.58	0.896756
				9409	10,217,170 – 10,217,281	+	5	111	69.73	-1.09	0.52	0.664502
				9410	10,217,170 – 10,217,281	-	5	111	69.73	-1.24	0.46	0.551746
6844	dm3.chr3L	10,240,658 – 10,240,750	- - - - - - - -	9411	10,240,658 – 10,240,750	-	11	109	76.86	-1.39	0.55	0.621297
6845	dm3.chr3L	10,244,814 – 10,244,919	- - - - - - - -	9412	10,244,814 – 10,244,919	+	7	106	85.64	-2.12	0.60	0.681545
6845	dm3.chr3L	10,244,814 – 10,244,919	- - - - - - - -	9413	10,244,814 – 10,244,919	-	7	106	85.64	-2.01	0.67	0.791187
6846	dm3.chr3L	10,248,906 – 10,249,023	- - - - - - - -	9414	10,248,906 – 10,249,023	-	11	124	77.40	-1.02	0.65	0.770144
6847	dm3.chr3L	10,251,115 – 10,251,211	- - - - - - - -	9415	10,251,115 – 10,251,211	-	6	97	83.18	-2.16	0.52	0.630501
6848	dm3.chr3L	10,260,058 – 10,260,109	- - - intron="intron;ID=intron_CG6577:1_CG6577:2;Name=can-in;Parent=FBtr0076299;parent_type=mRNA" - - - -	9416	10,260,058 – 10,260,109	+	3	51	96.08	-2.02	0.85	0.708687
6849	dm3.chr3L	10,272,084 – 10,272,174	- - - - - - - -	9417	10,272,084 – 10,272,174	-	12	120	84.68	-2.49	0.82	0.986833
6850	dm3.chr3L	10,275,519 – 10,275,613	- - - - - - - -	9418	10,275,519 – 10,275,613	-	7	94	78.41	-2.87	0.71	0.998596
6851	dm3.chr3L	10,280,509 – 10,280,601	- - - - - - - -	9419	10,280,509 – 10,280,601	-	12	107	82.02	-2.03	0.70	0.963089
6852	dm3.chr3L	10,282,378 – 10,282,476	- - - - - - - -	9420	10,282,378 – 10,282,476	+	3	98	98.64	-1.55	0.97	0.838572
6852	dm3.chr3L	10,282,378 – 10,282,476	- - - - - - - -	9421	10,282,378 – 10,282,476	-	3	98	98.64	-1.64	1.00	0.930243
6853	dm3.chr3L	10,283,399 – 10,283,507	- - - - - - - -	9422	10,283,399 – 10,283,495	+	11	113	78.00	-1.33	0.59	0.733078
				9423	10,283,399 – 10,283,495	-	11	113	78.00	-1.60	0.56	0.834223
				9424	10,283,405 – 10,283,507	+	11	114	82.03	-3.29	0.53	0.995187
				9425	10,283,405 – 10,283,507	-	11	114	82.03	-3.02	0.45	0.967760
6854	dm3.chr3L	10,284,353 – 10,284,446	- - - - - - - -	9426	10,284,353 – 10,284,446	+	5	100	91.83	-2.16	0.82	0.873914
6855	dm3.chr3L	10,285,553 – 10,285,682	- - - - - - - -	9427	10,285,553 – 10,285,647	-	6	101	74.10	-1.81	0.53	0.885422
6855	dm3.chr3L	10,285,553 – 10,285,682	- - - - - - - -	9428	10,285,577 – 10,285,682	-	5	111	92.47	-2.29	0.79	0.832620
6856	dm3.chr3L	10,287,410 – 10,287,500	- - - - - - - -	9429	10,287,410 – 10,287,500	+	10	115	78.51	-2.31	0.70	0.992946
6856	dm3.chr3L	10,287,410 – 10,287,500	- - - - - - - -	9430	10,287,410 – 10,287,500	-	10	115	78.51	-1.50	0.70	0.915692
6857	dm3.chr3L	10,288,822 – 10,288,916	- - - - - - - -	9431	10,288,822 – 10,288,916	+	8	102	73.05	-1.26	0.56	0.815157
6858	dm3.chr3L	10,299,580 – 10,299,670	- - - - - - - -	9432	10,299,580 – 10,299,670	+	6	101	83.26	-2.32	0.76	0.973621
6859	dm3.chr3L	10,301,862 – 10,301,964	- - - - - - - -	9433	10,301,862 – 10,301,964	+	7	109	81.74	-1.59	0.69	0.790542
6859	dm3.chr3L	10,301,862 – 10,301,964	- - - - - - - -	9434	10,301,862 – 10,301,964	-	7	109	81.74	-1.54	0.71	0.800288
6860	dm3.chr3L	10,305,603 – 10,305,699	- - - - - - - -	9435	10,305,603 – 10,305,699	-	4	104	75.45	-1.19	0.82	0.880576
6861	dm3.chr3L	10,310,284 – 10,310,417	- - - - - - - -	9436	10,310,284 – 10,310,382	+	6	109	84.15	-2.39	0.55	0.707372
				9437	10,310,284 – 10,310,382	-	6	109	84.15	-2.00	0.69	0.802319
				9438	10,310,315 – 10,310,417	+	7	105	76.75	-1.46	0.55	0.709930
				9439	10,310,315 – 10,310,417	-	7	105	76.75	-2.48	0.53	0.986492
6862	dm3.chr3L	10,311,464 – 10,311,555	- - - - - - - -	9440	10,311,464 – 10,311,555	-	7	104	67.92	-1.13	0.46	0.500000
6863	dm3.chr3L	10,312,886 – 10,312,987	FBnoncoding="pre_miRNA;ID=FBtr0304225;Name=mir-276b-RM;Parent=FBgn0262381;Alias=CR42904-RM;Dbxref=FlyBase_Annotation_IDs:CR42904-RM,miRBase:MI0000375" - - - "Rfam_10.0=RF00637;mir-276;AE014296.4/10312890-10312983\|3.4e-47" "Noncode_2.0=n178694_u177792_NW_045815_miRNA_Anopheles\|3.3e-07" "unique_Noncode_2.0=u177792_miRNA_Anopheles\|2.8e-07" "mirBase_v16=dme-mir-276b\|1.1e-50"	9441	10,312,886 – 10,312,987	+	14	110	82.49	-5.14	0.81	0.999592
6863	dm3.chr3L	10,312,886 – 10,312,987		9442	10,312,886 – 10,312,987	-	14	110	82.49	-3.59	0.76	0.999341
6864	dm3.chr3L	10,317,533 – 10,317,642	- - - - - - - -	9443	10,317,533 – 10,317,642	+	6	116	56.52	-1.16	0.31	0.640146
6865	dm3.chr3L	10,335,217 – 10,335,280	- - - - - - - -	9444	10,335,217 – 10,335,280	+	7	72	53.23	-0.88	0.43	0.951774
6865	dm3.chr3L	10,335,217 – 10,335,280	- - - - - - - -	9445	10,335,217 – 10,335,280	-	7	72	53.23	-0.58	0.36	0.553930
6866	dm3.chr3L	10,346,547 – 10,346,602	- - - - - - - -	9446	10,346,547 – 10,346,602	-	5	56	91.34	-1.38	0.91	0.720772
6867	dm3.chr3L	10,352,163 – 10,352,257	- - - - - - - -	9447	10,352,163 – 10,352,257	-	6	105	79.26	-1.78	0.64	0.854249
6868	dm3.chr3L	10,357,865 – 10,357,924	- - - - - - - -	9448	10,357,865 – 10,357,924	+	5	59	92.37	-1.62	0.91	0.839768
6869	dm3.chr3L	10,358,332 – 10,358,406	FBnoncoding="pre_miRNA;ID=FBtr0304431;Name=mir-276a-RM;Parent=FBgn0262439;Alias=CR43001-RM;Dbxref=FlyBase_Annotation_IDs:CR43001-RM,miRBase:MI0000359" - - - "Rfam_10.0=RF00637;mir-276;AANI01017424.1/110847-110939\|1.1e-27" "Noncode_2.0=n178694_u177792_NW_045815_miRNA_Anopheles\|2.3e-10" "unique_Noncode_2.0=u177792_miRNA_Anopheles\|2.0e-10" "mirBase_v16=dya-mir-276a\|3.9e-37"	9449	10,358,332 – 10,358,406	+	15	89	85.48	-6.44	0.95	0.994048
6869	dm3.chr3L	10,358,332 – 10,358,406		9450	10,358,332 – 10,358,406	-	15	89	85.48	-5.42	0.94	0.998488
6870	dm3.chr3L	10,361,477 – 10,361,609	- - - - - - - -	9451	10,361,477 – 10,361,571	+	4	100	83.51	-2.82	0.63	0.956105
6870	dm3.chr3L	10,361,477 – 10,361,609	- - - - - - - -	9452	10,361,507 – 10,361,609	+	4	103	86.44	-3.46	0.69	0.993123
6871	dm3.chr3L	10,363,519 – 10,363,610	- - - - - - - -	9453	10,363,519 – 10,363,610	-	6	103	78.18	-1.87	0.54	0.688173
6872	dm3.chr3L	10,374,120 – 10,374,274	- - - - - - - -	9454	10,374,120 – 10,374,238	+	10	120	91.72	-1.68	0.79	0.538495
				9455	10,374,120 – 10,374,238	-	10	120	91.72	-2.01	0.83	0.875870
				9456	10,374,159 – 10,374,274	+	9	116	80.63	-2.39	0.48	0.900381
				9457	10,374,159 – 10,374,274	-	9	116	80.63	-3.16	0.48	0.991846
6873	dm3.chr3L	10,390,173 – 10,390,299	- - - - - - - -	9458	10,390,173 – 10,390,267	+	9	108	79.15	-2.05	0.70	0.965870
				9459	10,390,173 – 10,390,267	-	9	108	79.15	-2.52	0.60	0.979205
				9460	10,390,187 – 10,390,299	+	6	120	78.26	-1.29	0.65	0.602360
				9461	10,390,187 – 10,390,299	-	6	120	78.26	-1.68	0.52	0.500000
6874	dm3.chr3L	10,400,101 – 10,400,240	- - - - - - - -	9462	10,400,101 – 10,400,207	+	7	114	81.12	-1.52	0.62	0.506743
				9463	10,400,101 – 10,400,207	-	7	114	81.12	-1.92	0.63	0.845536
				9464	10,400,140 – 10,400,240	+	6	114	83.58	-1.62	0.72	0.651175
6875	dm3.chr3L	10,420,379 – 10,420,470	- - - - - - - -	9465	10,420,379 – 10,420,470	-	7	105	71.19	-2.01	0.40	0.754584
6876	dm3.chr3L	10,427,384 – 10,427,562	- - - - - - - -	9466	10,427,384 – 10,427,562	+	5	179	71.88	-1.93	0.43	0.765676
6876	dm3.chr3L	10,427,384 – 10,427,562	- - - - - - - -	9467	10,427,384 – 10,427,562	-	5	179	71.88	-2.08	0.35	0.532446
6877	dm3.chr3L	10,431,478 – 10,431,575	- - - - - - - -	9468	10,431,478 – 10,431,575	+	8	99	82.62	-1.97	0.63	0.872313
6878	dm3.chr3L	10,432,536 – 10,432,639	- - - - - - - -	9469	10,432,536 – 10,432,639	-	6	106	78.72	-1.83	0.54	0.732759
6879	dm3.chr3L	10,438,388 – 10,438,481	- - - - - - - -	9470	10,438,388 – 10,438,481	+	6	102	74.27	-1.14	0.59	0.559487
6880	dm3.chr3L	10,444,165 – 10,444,275	- - - - - - - -	9471	10,444,165 – 10,444,275	-	10	125	65.26	-0.55	0.46	0.563728
6881	dm3.chr3L	10,446,017 – 10,446,107	- - - - - - - -	9472	10,446,017 – 10,446,107	-	8	119	73.75	-1.95	0.40	0.506507
6882	dm3.chr3L	10,466,912 – 10,467,005	- - - - - - - -	9473	10,466,912 – 10,467,005	-	4	93	86.83	-0.82	0.95	0.578679
6883	dm3.chr3L	10,475,910 – 10,476,028	- - - intron="intron;ID=intron_FBgn0052062:1_FBgn0052062:2;Name=A2bp1-in;Parent=FBtr0305093,FBtr0305097;parent_type=mRNA" - - - -	9474	10,475,910 – 10,476,000	+	11	99	71.09	-0.87	0.64	0.917819
				9475	10,475,933 – 10,476,028	+	11	109	55.86	-1.18	0.28	0.612330
				9476	10,475,933 – 10,476,028	-	11	109	55.86	-1.56	0.23	0.681371
6884	dm3.chr3L	10,482,755 – 10,482,858	- - - intron="intron;ID=intron_FBgn0052062:1_FBgn0052062:2;Name=A2bp1-in;Parent=FBtr0305093,FBtr0305097;parent_type=mRNA" - - - -	9477	10,482,755 – 10,482,858	+	6	107	76.93	-1.58	0.62	0.723864
6885	dm3.chr3L	10,486,897 – 10,487,024	- - - intron="intron;ID=intron_FBgn0052062:1_FBgn0052062:2;Name=A2bp1-in;Parent=FBtr0305093,FBtr0305097;parent_type=mRNA" - - - -	9478	10,486,897 – 10,486,995	-	6	103	75.03	-1.65	0.57	0.898808
6885	dm3.chr3L	10,486,897 – 10,487,024		9479	10,486,930 – 10,487,024	-	8	111	63.48	-1.73	0.29	0.553634
6886	dm3.chr3L	10,501,292 – 10,501,390	- - - intron="intron;ID=intron_FBgn0052062:2_FBgn0052062:5;Name=A2bp1-in;Parent=FBtr0305093,FBtr0305097;parent_type=mRNA" - - - -	9480	10,501,292 – 10,501,390	+	7	109	63.04	-1.64	0.35	0.902125
6887	dm3.chr3L	10,508,927 – 10,509,006	- - - intron="intron;ID=intron_FBgn0052062:2_FBgn0052062:5;Name=A2bp1-in;Parent=FBtr0305093,FBtr0305097;parent_type=mRNA" - - - -	9481	10,508,927 – 10,509,006	+	5	87	79.69	-2.92	0.74	0.996701
6887	dm3.chr3L	10,508,927 – 10,509,006		9482	10,508,927 – 10,509,006	-	5	87	79.69	-1.31	0.84	0.869263
6888	dm3.chr3L	10,510,265 – 10,510,380	- - - intron="intron;ID=intron_FBgn0052062:3_FBgn0052062:4;Name=A2bp1-in;Parent=FBtr0113418,FBtr0113419,FBtr0305094,FBtr0305095,FBtr0305096;parent_type=mRNA" - - - -	9483	10,510,265 – 10,510,380	-	3	115	87.83	-2.30	0.65	0.510139
6889	dm3.chr3L	10,523,223 – 10,523,315	- - - intron="intron;ID=intron_FBgn0052062:4_FBgn0052062:5;Name=A2bp1-in;Parent=FBtr0113418,FBtr0113419,FBtr0305094,FBtr0305095,FBtr0305096;parent_type=mRNA" - - - -	9484	10,523,223 – 10,523,315	+	7	109	69.87	-2.23	0.28	0.647367
6890	dm3.chr3L	10,544,097 – 10,544,209	- - - intron="intron;ID=intron_FBgn0052062:4_FBgn0052062:5;Name=A2bp1-in;Parent=FBtr0113418,FBtr0113419,FBtr0305094,FBtr0305095,FBtr0305096;parent_type=mRNA" - - - -	9485	10,544,097 – 10,544,209	-	10	118	82.41	-1.86	0.77	0.940799
6891	dm3.chr3L	10,552,650 – 10,552,777	- - - - - - - -	9486	10,552,650 – 10,552,741	-	3	99	90.00	-1.19	0.94	0.695899
6891	dm3.chr3L	10,552,650 – 10,552,777	- - - - - - - -	9487	10,552,685 – 10,552,777	-	3	98	90.31	-2.01	0.87	0.890362
6892	dm3.chr3L	10,571,722 – 10,571,813	- - - intron="intron;ID=intron_FBgn0052062:11_FBgn0052062:12;Name=A2bp1-in;Parent=FBtr0305093,FBtr0305094,FBtr0305096;parent_type=mRNA" - - - -	9488	10,571,722 – 10,571,813	-	12	105	62.10	-0.72	0.50	0.910585
6893	dm3.chr3L	10,578,481 – 10,578,592	- - CDS="CDS;ID=CDS_FBgn0052062:14_461;Name=A2bp1-cds;Parent=FBtr0305097;parent_type=mRNA" intron="intron;ID=intron_FBgn0052062:13_FBgn0052062:15;Name=A2bp1-in;Parent=FBtr0305094;parent_type=mRNA" - - - -	9489	10,578,481 – 10,578,592	+	11	112	69.79	-0.87	0.46	0.696920
6894	dm3.chr3L	10,582,455 – 10,582,622	- - CDS="CDS;ID=CDS_FBgn0052062:18_286;Name=A2bp1-cds;Parent=FBtr0305093;parent_type=mRNA" - - - - -	9490	10,582,455 – 10,582,622	+	13	167	79.45	-1.32	0.51	0.554082
6894	dm3.chr3L	10,582,455 – 10,582,622		9491	10,582,455 – 10,582,622	-	13	167	79.45	-1.30	0.51	0.534212
6895	dm3.chr3L	10,598,942 – 10,599,050	- - - - - - - -	9492	10,598,942 – 10,599,050	+	6	112	78.43	-1.91	0.52	0.613446
6895	dm3.chr3L	10,598,942 – 10,599,050	- - - - - - - -	9493	10,598,943 – 10,599,050	+	6	111	78.87	-1.83	0.54	0.567562
6896	dm3.chr3L	10,616,396 – 10,616,516	- - CDS="CDS;ID=CDS_FBgn0260396:1_342;Name=CG42521-cds;Parent=FBtr0300668;parent_type=mRNA" - - - - -	9494	10,616,396 – 10,616,516	+	5	120	89.25	-2.40	0.73	0.875923
6896	dm3.chr3L	10,616,396 – 10,616,516		9495	10,616,396 – 10,616,516	-	5	120	89.25	-2.07	0.81	0.881008
6897	dm3.chr3L	10,616,711 – 10,616,809	- - - - - - - -	9496	10,616,711 – 10,616,809	+	4	119	64.86	-1.46	0.52	0.890782
6898	dm3.chr3L	10,629,487 – 10,629,584	- - - intron="intron;ID=intron_FBgn0000629:5_FBgn0000629:4;Name=E(z)-in;Parent=FBtr0076279,FBtr0273338;parent_type=mRNA" - - - -	9497	10,629,487 – 10,629,584	-	12	116	76.65	-1.14	0.59	0.596278
6899	dm3.chr3L	10,664,414 – 10,664,547	- - - intron="intron;ID=intron_CG32067:1_CG32067:2;Name=simj-in;Parent=FBtr0076263,FBtr0076264;parent_type=mRNA" - - - -	9498	10,664,414 – 10,664,471	-	3	57	97.65	-2.27	1.01	0.988161
6899	dm3.chr3L	10,664,414 – 10,664,547		9499	10,664,471 – 10,664,547	-	7	81	69.23	-2.05	0.33	0.734705
6900	dm3.chr3L	10,672,791 – 10,672,851	- - - intron="intron;ID=intron_CG32067:1_CG32067:2;Name=simj-in;Parent=FBtr0076263,FBtr0076264;parent_type=mRNA" - - - -	9500	10,672,791 – 10,672,851	+	6	65	81.10	-1.70	0.80	0.940617
6900	dm3.chr3L	10,672,791 – 10,672,851		9501	10,672,791 – 10,672,851	-	6	65	81.10	-1.60	0.70	0.793422
6901	dm3.chr3L	10,675,554 – 10,675,615	- - - intron="intron;ID=intron_CG32067:1_CG32067:2;Name=simj-in;Parent=FBtr0076263,FBtr0076264;parent_type=mRNA" - - - -	9502	10,675,554 – 10,675,615	+	12	69	69.61	-1.60	0.38	0.728463
6902	dm3.chr3L	10,677,884 – 10,678,015	- - - intron="intron;ID=intron_CG32067:1_CG32067:2;Name=simj-in;Parent=FBtr0076263,FBtr0076264;parent_type=mRNA" - - - -	9503	10,677,884 – 10,678,015	-	5	133	72.54	-1.35	0.53	0.604026
6903	dm3.chr3L	10,678,146 – 10,678,239	- - CDS="CDS;ID=CDS_CG32067:2_295;Name=simj-cds;Parent=FBtr0076262,FBtr0076263,FBtr0076264;parent_type=mRNA" - - - - -	9504	10,678,146 – 10,678,239	+	13	120	77.22	-2.01	0.62	0.973909
6903	dm3.chr3L	10,678,146 – 10,678,239		9505	10,678,146 – 10,678,239	-	13	120	77.22	-2.52	0.56	0.990342
6904	dm3.chr3L	10,692,216 – 10,692,330	- - - - - - - -	9506	10,692,216 – 10,692,330	-	6	119	62.55	-0.69	0.49	0.703129
6905	dm3.chr3L	10,695,459 – 10,695,560	- - - - - - - -	9507	10,695,459 – 10,695,560	-	10	111	82.53	-1.46	0.70	0.703337
6906	dm3.chr3L	10,695,994 – 10,696,074	- - - - - - - -	9508	10,695,994 – 10,696,074	-	6	80	72.75	-2.01	0.57	0.987572
6907	dm3.chr3L	10,697,317 – 10,697,409	- - - - - - - -	9509	10,697,317 – 10,697,409	-	5	110	73.71	-2.61	0.37	0.807263
6908	dm3.chr3L	10,697,592 – 10,697,689	- - - - - - - -	9510	10,697,592 – 10,697,689	+	5	107	83.12	-3.11	0.61	0.986611
6908	dm3.chr3L	10,697,592 – 10,697,689	- - - - - - - -	9511	10,697,592 – 10,697,689	-	5	107	83.12	-2.59	0.47	0.642602
6909	dm3.chr3L	10,698,906 – 10,699,007	- - - - - - - -	9512	10,698,906 – 10,699,007	+	7	114	64.78	-2.14	0.39	0.985454
6910	dm3.chr3L	10,701,736 – 10,701,828	- - - - - - - -	9513	10,701,736 – 10,701,828	+	8	96	77.46	-2.08	0.50	0.818722
6910	dm3.chr3L	10,701,736 – 10,701,828	- - - - - - - -	9514	10,701,736 – 10,701,828	-	8	96	77.46	-1.76	0.61	0.870473
6911	dm3.chr3L	10,714,458 – 10,714,552	- - - - - - - -	9515	10,714,458 – 10,714,552	+	12	116	77.06	-1.97	0.40	0.541762
6912	dm3.chr3L	10,733,774 – 10,733,944	- - - - - - - -	9516	10,733,774 – 10,733,851	-	7	77	82.47	-2.20	0.64	0.938616
6912	dm3.chr3L	10,733,774 – 10,733,944	- - - - - - - -	9517	10,733,851 – 10,733,944	-	5	107	67.84	-1.60	0.59	0.957347
6913	dm3.chr3L	10,737,056 – 10,737,136	- - - - - - - -	9518	10,737,056 – 10,737,136	+	5	95	65.80	-2.29	0.69	0.998397
6914	dm3.chr3L	10,743,637 – 10,743,737	- - - - - - - -	9519	10,743,637 – 10,743,737	+	9	111	67.78	-1.69	0.32	0.539219
6915	dm3.chr3L	10,744,292 – 10,744,388	- - - - - - - -	9520	10,744,292 – 10,744,388	-	9	102	90.31	-2.40	0.74	0.904152
6916	dm3.chr3L	10,744,427 – 10,744,521	- - - - - - - -	9521	10,744,427 – 10,744,521	+	11	97	96.23	-2.41	0.96	0.984991
6916	dm3.chr3L	10,744,427 – 10,744,521	- - - - - - - -	9522	10,744,427 – 10,744,521	-	11	97	96.23	-2.00	0.97	0.965640
6917	dm3.chr3L	10,744,852 – 10,745,033	- - - - - - - -	9523	10,744,852 – 10,744,958	-	5	113	66.88	-2.69	0.35	0.979085
				9524	10,744,887 – 10,744,998	+	4	111	82.43	-2.64	0.62	0.946908
				9525	10,744,887 – 10,744,998	-	4	111	82.43	-2.99	0.61	0.980666
				9526	10,744,918 – 10,745,033	+	4	115	65.36	-1.95	0.31	0.533106
6918	dm3.chr3L	10,779,897 – 10,779,988	- - - - - - - -	9527	10,779,897 – 10,779,988	+	5	101	81.65	-1.86	0.62	0.595107
6919	dm3.chr3L	10,797,323 – 10,797,428	- - - - - - - -	9528	10,797,323 – 10,797,428	-	5	106	65.09	-1.63	0.54	0.989507
6920	dm3.chr3L	10,812,287 – 10,812,380	- - - - - - - -	9529	10,812,287 – 10,812,380	-	5	99	75.37	-1.08	0.75	0.799022
6921	dm3.chr3L	10,812,482 – 10,812,546	- - - - - - - -	9530	10,812,482 – 10,812,546	-	8	69	63.55	-1.37	0.37	0.871825
6922	dm3.chr3L	10,829,420 – 10,829,483	- - - intron="intron;ID=intron_FBgn0026160:1_FBgn0026160:5;Name=tna-in;Parent=FBtr0112923;parent_type=mRNA" - - - -	9531	10,829,420 – 10,829,483	+	11	63	93.19	-1.89	0.90	0.923887
6923	dm3.chr3L	10,835,227 – 10,835,339	- - - intron="intron;ID=intron_FBgn0026160:1_FBgn0026160:5;Name=tna-in;Parent=FBtr0112923;parent_type=mRNA" - - - -	9532	10,835,227 – 10,835,339	+	8	120	69.29	-0.92	0.46	0.500000
6924	dm3.chr3L	10,835,782 – 10,835,902	- - - intron="intron;ID=intron_FBgn0026160:1_FBgn0026160:5;Name=tna-in;Parent=FBtr0112923;parent_type=mRNA" - - - -	9533	10,835,782 – 10,835,902	+	6	121	76.95	-2.00	0.44	0.666553
6925	dm3.chr3L	10,837,347 – 10,837,442	- - - intron="intron;ID=intron_FBgn0026160:1_FBgn0026160:5;Name=tna-in;Parent=FBtr0112923;parent_type=mRNA" - - - -	9534	10,837,347 – 10,837,442	-	4	119	56.18	-0.67	0.47	0.576931
6926	dm3.chr3L	10,841,688 – 10,841,788	- - - intron="intron;ID=intron_FBgn0026160:1_FBgn0026160:5;Name=tna-in;Parent=FBtr0112923;parent_type=mRNA" - - - -	9535	10,841,688 – 10,841,788	+	12	116	79.21	-1.69	0.58	0.750126
6927	dm3.chr3L	10,845,621 – 10,845,704	- - - intron="intron;ID=intron_FBgn0026160:1_FBgn0026160:5;Name=tna-in;Parent=FBtr0112923;parent_type=mRNA" - - - -	9536	10,845,621 – 10,845,704	+	5	83	99.04	-2.34	0.95	0.966192
6928	dm3.chr3L	10,857,264 – 10,857,315	- - - intron="intron;ID=intron_FBgn0026160:3_FBgn0026160:5;Name=tna-in;Parent=FBtr0301658;parent_type=mRNA" - - - -	9537	10,857,264 – 10,857,315	+	7	61	80.54	-1.46	0.64	0.539360
6929	dm3.chr3L	10,875,369 – 10,875,431	- - - - - - - -	9538	10,875,369 – 10,875,431	-	6	69	68.27	-0.88	0.52	0.573662
6930	dm3.chr3L	10,879,103 – 10,879,177	- - - - - - - -	9539	10,879,103 – 10,879,177	+	8	74	67.46	-1.19	0.46	0.842290
6931	dm3.chr3L	10,879,224 – 10,879,280	- - - - - - - -	9540	10,879,224 – 10,879,280	+	6	59	67.32	-1.15	0.51	0.877942
6932	dm3.chr3L	10,879,570 – 10,879,663	- - - - - - - -	9541	10,879,570 – 10,879,663	+	5	112	51.26	-1.70	0.25	0.777771
6933	dm3.chr3L	10,881,177 – 10,881,272	- - - - - - - -	9542	10,881,177 – 10,881,272	-	7	107	59.59	-0.69	0.42	0.610327
6934	dm3.chr3L	10,891,817 – 10,891,944	- - - - - - - -	9543	10,891,817 – 10,891,909	-	5	92	87.53	-1.74	0.84	0.827581
6934	dm3.chr3L	10,891,817 – 10,891,944	- - - - - - - -	9544	10,891,842 – 10,891,944	-	7	109	69.25	-2.55	0.31	0.952962
6935	dm3.chr3L	10,897,311 – 10,897,424	- - - - - - - -	9545	10,897,311 – 10,897,424	+	7	121	75.62	-1.80	0.49	0.706464
6936	dm3.chr3L	10,906,309 – 10,906,421	- - - - - - - -	9546	10,906,309 – 10,906,403	+	9	108	76.28	-2.53	0.69	0.994706
				9547	10,906,309 – 10,906,403	-	9	108	76.28	-3.38	0.63	0.999055
				9548	10,906,322 – 10,906,421	+	11	120	75.00	-2.41	0.51	0.980371
				9549	10,906,322 – 10,906,421	-	11	120	75.00	-2.37	0.45	0.942757
6937	dm3.chr3L	10,908,861 – 10,908,995	- - - - - - - -	9550	10,908,861 – 10,908,995	+	6	135	87.70	-1.37	0.84	0.624513
6938	dm3.chr3L	10,923,485 – 10,923,539	- - - - - - - -	9551	10,923,485 – 10,923,539	+	7	60	90.94	-1.95	0.86	0.901914
6939	dm3.chr3L	10,928,993 – 10,929,096	- - - - - - - -	9552	10,928,993 – 10,929,096	+	12	119	75.16	-2.01	0.41	0.758829
6940	dm3.chr3L	10,929,726 – 10,929,818	- - - - - - - -	9553	10,929,726 – 10,929,818	+	9	103	83.98	-2.46	0.71	0.972878
6940	dm3.chr3L	10,929,726 – 10,929,818	- - - - - - - -	9554	10,929,726 – 10,929,818	-	9	103	83.98	-1.28	0.77	0.567832
6941	dm3.chr3L	10,955,495 – 10,955,617	- - - - - - - -	9555	10,955,495 – 10,955,599	+	11	115	81.52	-2.16	0.72	0.977244
				9556	10,955,495 – 10,955,599	-	11	115	81.52	-1.24	0.76	0.748815
				9557	10,955,524 – 10,955,617	+	10	103	72.00	-0.94	0.54	0.757020
				9558	10,955,524 – 10,955,617	-	10	103	72.00	-1.24	0.46	0.712100
6942	dm3.chr3L	10,966,179 – 10,966,271	- - CDS="CDS;ID=CDS_CG14147:2_285;Name=CG14147-cds;Parent=FBtr0076194;parent_type=mRNA" - - - - -	9559	10,966,179 – 10,966,271	+	9	99	67.34	-0.91	0.46	0.639439
6943	dm3.chr3L	10,967,341 – 10,967,441	- - - - - - - -	9560	10,967,341 – 10,967,441	+	5	109	90.83	-1.92	0.75	0.512245
6944	dm3.chr3L	10,974,526 – 10,974,583	- - - - - - - -	9561	10,974,526 – 10,974,583	+	7	70	60.00	-1.00	0.40	0.646073
6945	dm3.chr3L	10,982,752 – 10,982,860	- - - intron="intron;ID=intron_CG12296:2_CG12296:3;Name=klu-in;Parent=FBtr0076247;parent_type=mRNA" - - - -	9562	10,982,752 – 10,982,860	-	8	118	82.83	-2.09	0.51	0.579737
6946	dm3.chr3L	10,988,341 – 10,988,434	- - - intron="intron;ID=intron_CG12296:2_CG12296:3;Name=klu-in;Parent=FBtr0076247;parent_type=mRNA" - - - -	9563	10,988,341 – 10,988,434	-	6	110	71.86	-1.48	0.60	0.907043
6947	dm3.chr3L	11,010,653 – 11,010,759	- - - - - - - -	9564	11,010,653 – 11,010,748	+	5	106	78.05	-2.58	0.43	0.798549
				9565	11,010,653 – 11,010,748	-	5	106	78.05	-4.09	0.54	0.999277
				9566	11,010,657 – 11,010,759	-	8	110	61.48	-3.65	0.09	0.960219
6948	dm3.chr3L	11,023,725 – 11,023,821	- - - - - - - -	9567	11,023,725 – 11,023,821	+	9	107	79.18	-1.05	0.69	0.575076
6949	dm3.chr3L	11,032,283 – 11,032,356	- - - intron="intron;ID=intron_FBgn0036115:5_FBgn0036115:3;Name=CG6327-in;Parent=FBtr0076245;parent_type=mRNA" - - - -	9568	11,032,283 – 11,032,356	-	5	73	90.00	-1.49	0.88	0.758557
6950	dm3.chr3L	11,032,901 – 11,033,042	- - - intron="intron;ID=intron_FBgn0036115:6_FBgn0036115:4;Name=CG6327-in;Parent=FBtr0076246,FBtr0076243,FBtr0076244,FBtr0306352,FBtr0306353;parent_type=mRNA" - - - -	9569	11,032,901 – 11,033,010	-	8	110	73.51	-1.36	0.58	0.907321
6950	dm3.chr3L	11,032,901 – 11,033,042		9570	11,032,941 – 11,033,042	-	8	106	66.50	-1.94	0.32	0.833888
6951	dm3.chr3L	11,033,518 – 11,033,614	- - CDS="CDS;ID=CDS_FBgn0085268:1_363;Name=CG34239-cds;Parent=FBtr0112433;parent_type=mRNA" intron="intron;ID=intron_FBgn0036115:8_FBgn0036115:6;Name=CG6327-in;Parent=FBtr0076243;parent_type=mRNA" - - - -	9571	11,033,518 – 11,033,614	+	12	115	70.69	-1.57	0.37	0.550977
6952	dm3.chr3L	11,048,708 – 11,048,819	- - - intron="intron;ID=intron_FBgn0036116:1_FBgn0036116:4;Name=CG7888-in;Parent=FBtr0076199;parent_type=mRNA" - - - -	9572	11,048,708 – 11,048,819	+	3	111	81.82	-1.54	0.82	0.706992
6953	dm3.chr3L	11,084,743 – 11,084,806	- - - - - - - -	9573	11,084,743 – 11,084,806	+	7	68	64.23	-1.12	0.47	0.913468
6953	dm3.chr3L	11,084,743 – 11,084,806	- - - - - - - -	9574	11,084,743 – 11,084,806	-	7	68	64.23	-1.13	0.69	0.993104
6954	dm3.chr3L	11,087,649 – 11,087,752	- - CDS="CDS;ID=CDS_FBgn0036125:4_352;Name=CG6279-cds;Parent=FBtr0076235;parent_type=mRNA" - - - - -	9575	11,087,649 – 11,087,752	+	4	104	60.87	-1.36	0.40	0.736948
6955	dm3.chr3L	11,096,219 – 11,096,339	- - - - - - - -	9576	11,096,219 – 11,096,339	+	3	120	95.54	-2.01	0.87	0.791939
6956	dm3.chr3L	11,111,704 – 11,111,811	- - - - - - - -	9577	11,111,704 – 11,111,811	-	6	112	79.15	-1.12	0.78	0.731196
6957	dm3.chr3L	11,112,132 – 11,112,237	- - - - - - - -	9578	11,112,132 – 11,112,237	-	5	113	79.41	-2.09	0.48	0.560723
6958	dm3.chr3L	11,116,573 – 11,116,625	- - - intron="intron;ID=intron_FBgn0260795:1_FBgn0260795:2;Name=CG42575-in;Parent=FBtr0301438;parent_type=mRNA" - - - -	9579	11,116,573 – 11,116,625	-	5	52	82.63	-2.09	0.69	0.879621
6959	dm3.chr3L	11,117,352 – 11,117,491	- - - intron="intron;ID=intron_FBgn0260795:1_FBgn0260795:2;Name=CG42575-in;Parent=FBtr0301438;parent_type=mRNA" - - - -	9580	11,117,352 – 11,117,462	+	5	122	78.04	-2.04	0.53	0.770154
				9581	11,117,352 – 11,117,462	-	5	122	78.04	-1.73	0.57	0.646233
				9582	11,117,371 – 11,117,491	-	5	120	80.15	-2.13	0.58	0.830075
6960	dm3.chr3L	11,144,347 – 11,144,439	- - - - - - - -	9583	11,144,347 – 11,144,439	+	7	100	74.15	-1.43	0.55	0.769996
6961	dm3.chr3L	11,162,727 – 11,162,779	- - - - - - - -	9584	11,162,727 – 11,162,779	-	6	63	66.71	-1.20	0.50	0.756104
6962	dm3.chr3L	11,166,652 – 11,166,745	- - CDS="CDS;ID=CDS_FBgn0036143:1_352;Name=CG14142-cds;Parent=FBtr0300347,FBtr0300348;parent_type=mRNA" - - - - -	9585	11,166,652 – 11,166,745	+	13	117	64.74	-0.63	0.47	0.571076
6963	dm3.chr3L	11,173,001 – 11,173,104	- - - intron="intron;ID=intron_FBgn0036144:5_FBgn0036144:4;Name=GlcAT-P-in;Parent=FBtr0076189,FBtr0306254;parent_type=mRNA" - - - -	9586	11,173,001 – 11,173,104	-	8	106	84.80	-1.39	0.80	0.666224
6964	dm3.chr3L	11,175,974 – 11,176,087	- - - intron="intron;ID=intron_FBgn0036144:6_FBgn0036144:5;Name=GlcAT-P-in;Parent=FBtr0076189,FBtr0306254;parent_type=mRNA" - - - -	9587	11,175,974 – 11,176,087	-	4	113	78.11	-1.44	0.69	0.638292
6965	dm3.chr3L	11,176,333 – 11,176,425	- - - intron="intron;ID=intron_FBgn0036144:6_FBgn0036144:5;Name=GlcAT-P-in;Parent=FBtr0076189,FBtr0306254;parent_type=mRNA" - - - -	9588	11,176,333 – 11,176,425	+	5	112	63.56	-1.35	0.40	0.553184
6966	dm3.chr3L	11,180,391 – 11,180,494	- - - intron="intron;ID=intron_FBgn0036144:8_FBgn0036144:7;Name=GlcAT-P-in;Parent=FBtr0076189,FBtr0100422,FBtr0076190,FBtr0306254,FBtr0306255;parent_type=mRNA" - - - -	9589	11,180,391 – 11,180,494	+	8	119	76.58	-2.03	0.50	0.841599
6967	dm3.chr3L	11,183,090 – 11,183,181	- - - intron="intron;ID=intron_FBgn0036144:8_FBgn0036144:7;Name=GlcAT-P-in;Parent=FBtr0076189,FBtr0100422,FBtr0076190,FBtr0306254,FBtr0306255;parent_type=mRNA" - - - -	9590	11,183,090 – 11,183,181	-	5	101	53.46	-0.52	0.42	0.588038
6968	dm3.chr3L	11,189,579 – 11,189,658	- - - intron="intron;ID=intron_FBgn0036144:8_FBgn0036144:7;Name=GlcAT-P-in;Parent=FBtr0076189,FBtr0100422,FBtr0076190,FBtr0306254,FBtr0306255;parent_type=mRNA" - - - -	9591	11,189,579 – 11,189,658	-	3	86	52.38	-1.81	0.31	0.703841
6969	dm3.chr3L	11,198,370 – 11,198,483	- - - intron="intron;ID=intron_FBgn0036147:11_FBgn0036147:9;Name=CG6199-in;Parent=FBtr0076187;parent_type=mRNA" - - - -	9592	11,198,370 – 11,198,483	-	7	120	63.99	-1.19	0.38	0.768676
6970	dm3.chr3L	11,203,657 – 11,203,763	- - - - - - - -	9593	11,203,657 – 11,203,763	-	5	115	75.72	-2.11	0.47	0.742917
6971	dm3.chr3L	11,204,043 – 11,204,111	- - CDS="CDS;ID=CDS_FBgn0064766:1_425;Name=CG7600-cds;Parent=FBtr0076165;parent_type=mRNA" - - - - -	9594	11,204,043 – 11,204,111	-	7	86	59.05	-1.61	0.43	0.978294
6972	dm3.chr3L	11,212,596 – 11,212,771	- - - intron="intron;ID=intron_FBgn0261553:4_FBgn0261553:5;Name=CG42671-in;Parent=FBtr0302700,FBtr0302696,FBtr0302697,FBtr0302698,FBtr0302699,FBtr0304933,FBtr0304934;parent_type=mRNA" - - - -	9595	11,212,596 – 11,212,703	-	8	113	68.26	-2.08	0.33	0.854038
				9596	11,212,624 – 11,212,743	-	8	120	69.23	-1.55	0.36	0.569289
				9597	11,212,663 – 11,212,771	-	8	110	65.33	-0.95	0.40	0.562055
6973	dm3.chr3L	11,221,406 – 11,221,509	- - - intron="intron;ID=intron_FBgn0261553:9_FBgn0261553:11;Name=CG42671-in;Parent=FBtr0304933,FBtr0304934;parent_type=mRNA" - - - -	9598	11,221,406 – 11,221,509	+	5	116	76.91	-2.19	0.53	0.828492
6974	dm3.chr3L	11,230,317 – 11,230,414	- - - - - - - -	9599	11,230,317 – 11,230,414	+	11	113	88.92	-3.26	0.89	0.997603
6975	dm3.chr3L	11,239,470 – 11,239,566	- - - - - - - -	9600	11,239,470 – 11,239,566	+	12	120	64.74	-1.49	0.37	0.748104
6975	dm3.chr3L	11,239,470 – 11,239,566	- - - - - - - -	9601	11,239,470 – 11,239,566	-	12	120	64.74	-1.22	0.39	0.613071
6976	dm3.chr3L	11,242,062 – 11,242,162	- - - - - - - -	9602	11,242,062 – 11,242,162	+	4	100	63.57	-2.36	0.35	0.914909
6976	dm3.chr3L	11,242,062 – 11,242,162	- - - - - - - -	9603	11,242,062 – 11,242,162	-	4	100	63.57	-2.10	0.53	0.990345
6977	dm3.chr3L	11,244,871 – 11,244,942	- - - - - - - -	9604	11,244,871 – 11,244,942	-	5	74	94.94	-2.23	0.89	0.934052
6978	dm3.chr3L	11,256,089 – 11,256,181	- - - - - - - -	9605	11,256,089 – 11,256,181	-	7	98	66.24	-1.11	0.43	0.668380
6979	dm3.chr3L	11,264,650 – 11,264,770	- - - - - - - -	9606	11,264,650 – 11,264,770	-	6	120	70.63	-1.77	0.35	0.567780
6980	dm3.chr3L	11,265,288 – 11,265,410	- - - - - - - -	9607	11,265,288 – 11,265,381	-	5	99	67.06	-1.52	0.43	0.729312
6980	dm3.chr3L	11,265,288 – 11,265,410	- - - - - - - -	9608	11,265,317 – 11,265,410	-	6	99	70.40	-1.56	0.44	0.752020
6981	dm3.chr3L	11,265,575 – 11,265,682	- - - - - - - -	9609	11,265,575 – 11,265,682	-	8	109	83.89	-1.85	0.62	0.583317
6982	dm3.chr3L	11,269,185 – 11,269,275	- - - - - - - -	9610	11,269,185 – 11,269,275	+	4	97	62.23	-1.36	0.57	0.956554
6983	dm3.chr3L	11,291,098 – 11,291,161	- - - - - - - -	9611	11,291,098 – 11,291,161	-	5	63	96.98	-2.71	0.95	0.989162
6984	dm3.chr3L	11,293,132 – 11,293,235	- - - - - - - -	9612	11,293,132 – 11,293,235	+	12	116	80.61	-2.07	0.52	0.832892
6984	dm3.chr3L	11,293,132 – 11,293,235	- - - - - - - -	9613	11,293,132 – 11,293,235	-	12	116	80.61	-2.14	0.43	0.583598
6985	dm3.chr3L	11,295,102 – 11,295,203	- - - - - - - -	9614	11,295,102 – 11,295,203	+	9	102	77.64	-1.32	0.55	0.599615
6986	dm3.chr3L	11,296,012 – 11,296,102	- - - - - - - -	9615	11,296,012 – 11,296,102	-	5	91	98.45	-1.11	1.01	0.793200
6987	dm3.chr3L	11,297,475 – 11,297,566	- - - - - - - -	9616	11,297,475 – 11,297,566	-	8	95	86.45	-1.99	0.83	0.952750
6988	dm3.chr3L	11,302,143 – 11,302,268	- - - - - - - -	9617	11,302,143 – 11,302,237	+	7	99	73.36	-1.92	0.35	0.532453
				9618	11,302,143 – 11,302,237	-	7	99	73.36	-1.55	0.51	0.859753
				9619	11,302,175 – 11,302,268	-	6	99	70.97	-1.55	0.52	0.907926
6989	dm3.chr3L	11,303,674 – 11,303,770	- - - - - - - -	9620	11,303,674 – 11,303,770	+	10	103	73.98	-0.96	0.51	0.594032
6990	dm3.chr3L	11,308,284 – 11,308,351	- - - - - - - -	9621	11,308,284 – 11,308,351	-	5	67	58.11	-1.26	0.35	0.747220
6991	dm3.chr3L	11,313,361 – 11,313,453	- - - - - - - -	9622	11,313,361 – 11,313,453	-	6	113	85.12	-1.98	0.78	0.897817
6992	dm3.chr3L	11,335,164 – 11,335,222	- - - - - - - -	9623	11,335,164 – 11,335,222	-	8	69	66.27	-2.97	0.15	0.638006
6993	dm3.chr3L	11,344,693 – 11,344,794	- - - - - - - -	9624	11,344,693 – 11,344,794	-	5	103	94.63	-2.12	0.87	0.884529
6994	dm3.chr3L	11,347,293 – 11,347,379	- - - - - - - -	9625	11,347,293 – 11,347,379	+	12	100	81.96	-1.29	0.75	0.785809
6994	dm3.chr3L	11,347,293 – 11,347,379	- - - - - - - -	9626	11,347,293 – 11,347,379	-	12	100	81.96	-3.18	0.50	0.991476
6995	dm3.chr3L	11,356,701 – 11,356,813	- - CDS="CDS;ID=CDS_CG6163:2_285;Name=CG6163-cds;Parent=FBtr0076181;parent_type=mRNA" - - - - -	9627	11,356,701 – 11,356,813	+	11	113	64.80	-1.21	0.35	0.630937
6995	dm3.chr3L	11,356,701 – 11,356,813		9628	11,356,701 – 11,356,813	-	11	113	64.80	-1.33	0.33	0.629219
6996	dm3.chr3L	11,359,732 – 11,359,832	- - - - - - - -	9629	11,359,732 – 11,359,832	+	3	107	89.81	-1.77	0.84	0.709708
6997	dm3.chr3L	11,362,266 – 11,362,375	- - - - - - - -	9630	11,362,266 – 11,362,356	-	7	93	83.63	-1.25	0.80	0.642850
6997	dm3.chr3L	11,362,266 – 11,362,375	- - - - - - - -	9631	11,362,284 – 11,362,375	-	7	94	81.52	-2.52	0.57	0.941298
6998	dm3.chr3L	11,364,297 – 11,364,401	- - - - - - - -	9632	11,364,297 – 11,364,401	+	4	104	81.63	-2.14	0.60	0.735308
6999	dm3.chr3L	11,386,051 – 11,386,102	- - - - - - - -	9633	11,386,051 – 11,386,102	-	3	54	95.06	-2.04	0.96	0.960392
7000	dm3.chr3L	11,391,687 – 11,391,787	- - - - - - - -	9634	11,391,687 – 11,391,787	-	11	109	72.14	-1.29	0.43	0.633015
7001	dm3.chr3L	11,394,766 – 11,394,874	- - - - - - - -	9635	11,394,766 – 11,394,874	-	4	120	80.03	-2.82	0.48	0.885742
7002	dm3.chr3L	11,414,531 – 11,414,621	- - - - - - - -	9636	11,414,531 – 11,414,621	+	5	101	76.58	-2.31	0.61	0.971930
7003	dm3.chr3L	11,414,995 – 11,415,071	- - - - - - - -	9637	11,414,995 – 11,415,071	+	5	84	87.12	-2.40	0.74	0.923365
7003	dm3.chr3L	11,414,995 – 11,415,071	- - - - - - - -	9638	11,414,995 – 11,415,071	-	5	84	87.12	-2.45	0.79	0.962043
7004	dm3.chr3L	11,420,574 – 11,420,673	- - - - - - - -	9639	11,420,574 – 11,420,673	-	11	116	73.83	-0.80	0.60	0.513828
7005	dm3.chr3L	11,421,581 – 11,421,764	- - - - - - - -	9640	11,421,581 – 11,421,764	+	4	184	83.15	-2.61	0.75	0.981687
7005	dm3.chr3L	11,421,581 – 11,421,764	- - - - - - - -	9641	11,421,581 – 11,421,764	-	4	184	83.15	-2.52	0.65	0.932193
7006	dm3.chr3L	11,422,835 – 11,422,968	- - - - - - - -	9642	11,422,835 – 11,422,936	+	5	113	83.14	-2.27	0.75	0.950147
7006	dm3.chr3L	11,422,835 – 11,422,968	- - - - - - - -	9643	11,422,873 – 11,422,968	+	5	115	65.19	-1.44	0.52	0.855774
7007	dm3.chr3L	11,427,153 – 11,427,273	- - - - - - - -	9644	11,427,153 – 11,427,273	-	5	120	91.67	-2.18	0.82	0.886511
7008	dm3.chr3L	11,442,726 – 11,442,845	- - - - - - - -	9645	11,442,726 – 11,442,845	-	5	120	84.25	-1.34	0.79	0.607319
7009	dm3.chr3L	11,469,350 – 11,469,449	- - - - - - - -	9646	11,469,350 – 11,469,449	-	11	110	79.63	-1.86	0.45	0.500000
7010	dm3.chr3L	11,478,505 – 11,478,609	- - - - - - - -	9647	11,478,505 – 11,478,609	+	5	113	70.76	-1.43	0.51	0.581187
7011	dm3.chr3L	11,486,284 – 11,486,439	- - - intron="intron;ID=intron_CG7533:1_CG7533:2;Name=chrb-in;Parent=FBtr0076093;parent_type=mRNA" - - - -	9648	11,486,284 – 11,486,439	-	5	166	71.61	-1.84	0.40	0.585089
7012	dm3.chr3L	11,486,706 – 11,486,759	- - - intron="intron;ID=intron_CG7533:1_CG7533:2;Name=chrb-in;Parent=FBtr0076093;parent_type=mRNA" - - - -	9649	11,486,706 – 11,486,759	+	9	53	88.46	-2.23	0.65	0.785086
7013	dm3.chr3L	11,499,291 – 11,499,356	- - - - - - - -	9650	11,499,291 – 11,499,356	+	5	65	63.85	-0.54	0.50	0.580739
7013	dm3.chr3L	11,499,291 – 11,499,356	- - - - - - - -	9651	11,499,291 – 11,499,356	-	5	65	63.85	-0.99	0.40	0.518681
7014	dm3.chr3L	11,507,327 – 11,507,469	- - - intron="intron;ID=intron_FBgn0036168:1_FBgn0036168:2;Name=CG7512-in;Parent=FBtr0302797;parent_type=mRNA" - - - -	9652	11,507,327 – 11,507,431	+	4	105	82.02	-1.47	0.79	0.724758
				9653	11,507,327 – 11,507,431	-	4	105	82.02	-2.70	0.71	0.982961
				9654	11,507,355 – 11,507,469	-	4	117	73.19	-1.76	0.63	0.919001
7015	dm3.chr3L	11,510,895 – 11,511,077	- - CDS="CDS;ID=CDS_FBgn0036168:5_433;Name=CG7512-cds;Parent=FBtr0302797;parent_type=mRNA" - - - - -	9655	11,510,895 – 11,510,997	-	12	114	74.39	-0.91	0.58	0.650977
7015	dm3.chr3L	11,510,895 – 11,511,077		9656	11,510,958 – 11,511,077	+	7	119	72.76	-1.07	0.51	0.592938
7016	dm3.chr3L	11,525,165 – 11,525,260	- - - intron="intron;ID=intron_CG11711:7_CG11711:8;Name=Mob2-in;Parent=FBtr0089333;parent_type=mRNA" - - - -	9657	11,525,165 – 11,525,260	-	5	99	82.47	-2.02	0.62	0.691818
7017	dm3.chr3L	11,527,204 – 11,527,331	- - - intron="intron;ID=intron_CG11711:7_CG11711:8;Name=Mob2-in;Parent=FBtr0089333;parent_type=mRNA" - - - -	9658	11,527,204 – 11,527,313	+	6	111	60.88	-2.68	0.25	0.982184
7017	dm3.chr3L	11,527,204 – 11,527,331		9659	11,527,225 – 11,527,331	+	5	109	76.83	-2.55	0.46	0.903238
7018	dm3.chr3L	11,528,915 – 11,528,972	- - - - - - - -	9660	11,528,915 – 11,528,972	+	3	57	92.94	-2.50	0.89	0.969451
7018	dm3.chr3L	11,528,915 – 11,528,972	- - - - - - - -	9661	11,528,915 – 11,528,972	-	3	57	92.94	-1.38	0.97	0.851816
7019	dm3.chr3L	11,534,910 – 11,535,012	- - CDS="CDS;ID=CDS_CG11711:6_295;Name=Mob2-cds;Parent=FBtr0089332;parent_type=mRNA" - - - - -	9662	11,534,910 – 11,535,012	+	6	111	79.17	-1.50	0.59	0.516471
7019	dm3.chr3L	11,534,910 – 11,535,012		9663	11,534,910 – 11,535,012	-	6	111	79.17	-1.00	0.74	0.538391
7020	dm3.chr3L	11,539,024 – 11,539,165	- - - intron="intron;ID=intron_CG11711:9_CG11711:6;Name=Mob2-in;Parent=FBtr0089332;parent_type=mRNA" - - - -	9664	11,539,024 – 11,539,165	+	3	141	89.19	-1.34	0.90	0.640073
7021	dm3.chr3L	11,544,484 – 11,544,634	- - - intron="intron;ID=intron_CG11711:9_CG11711:6;Name=Mob2-in;Parent=FBtr0089332;parent_type=mRNA" - - - -	9665	11,544,484 – 11,544,634	-	5	153	76.05	-1.79	0.48	0.559300
7022	dm3.chr3L	11,546,679 – 11,546,769	- - - - - - - -	9666	11,546,679 – 11,546,769	-	9	102	62.79	-1.37	0.38	0.764674
7023	dm3.chr3L	11,555,500 – 11,555,594	- - - - - - - -	9667	11,555,500 – 11,555,594	+	6	100	74.72	-2.07	0.43	0.805664
7024	dm3.chr3L	11,565,270 – 11,565,367	- - - intron="intron;ID=intron_FBgn0053267:1_FBgn0053267:2;Name=CG33267-in;Parent=FBtr0305649;parent_type=mRNA" - - - -	9668	11,565,270 – 11,565,367	+	3	98	56.90	-2.26	0.64	0.999096
7024	dm3.chr3L	11,565,270 – 11,565,367		9669	11,565,270 – 11,565,367	-	3	98	56.90	-2.03	0.53	0.995408
7025	dm3.chr3L	11,566,256 – 11,566,323	- - CDS="CDS;ID=CDS_FBgn0053490:1_331;Name=CG33490-cds;Parent=FBtr0089526;parent_type=mRNA" - - - - -	9670	11,566,256 – 11,566,323	+	4	68	68.89	-1.04	0.60	0.677796
7025	dm3.chr3L	11,566,256 – 11,566,323		9671	11,566,256 – 11,566,323	-	4	68	68.89	-1.76	0.44	0.716531
7026	dm3.chr3L	11,572,876 – 11,572,994	- - - - - - - -	9672	11,572,876 – 11,572,994	+	5	119	69.09	-1.55	0.51	0.906715
7027	dm3.chr3L	11,589,820 – 11,590,018	- - - - - - - -	9673	11,589,820 – 11,589,931	-	4	112	85.80	-1.53	0.80	0.638195
				9674	11,589,931 – 11,590,018	+	5	87	93.62	-1.75	0.84	0.596544
				9675	11,589,931 – 11,590,018	-	5	87	93.62	-1.39	0.94	0.771849
7028	dm3.chr3L	11,591,330 – 11,591,422	- - - intron="intron;ID=intron_FBgn0036179:1_FBgn0036179:2;Name=CG7368-in;Parent=FBtr0110884;parent_type=mRNA" - - - -	9676	11,591,330 – 11,591,422	+	6	94	67.73	-1.55	0.42	0.796124
7028	dm3.chr3L	11,591,330 – 11,591,422		9677	11,591,330 – 11,591,422	-	6	94	67.73	-2.07	0.44	0.975417
7029	dm3.chr3L	11,594,245 – 11,594,352	- - - intron="intron;ID=intron_FBgn0036179:1_FBgn0036179:2;Name=CG7368-in;Parent=FBtr0110884;parent_type=mRNA" - - - -	9678	11,594,245 – 11,594,352	+	6	120	75.39	-2.03	0.56	0.947619
7029	dm3.chr3L	11,594,245 – 11,594,352		9679	11,594,245 – 11,594,352	-	6	120	75.39	-2.25	0.52	0.957906
7030	dm3.chr3L	11,600,278 – 11,600,368	- - CDS="CDS;ID=CDS_FBgn0036180:6_390;Name=CG6091-cds;Parent=FBtr0301145,FBtr0273304,FBtr0273305,FBtr0273306;parent_type=mRNA" - - - - -	9680	11,600,278 – 11,600,368	-	15	104	74.01	-1.31	0.47	0.716420
7031	dm3.chr3L	11,612,414 – 11,612,466	- - CDS="CDS;ID=CDS_CG18331:1_339;Name=Muc68Ca-cds;Parent=FBtr0076140;parent_type=mRNA" - - - - -	9681	11,612,414 – 11,612,466	+	6	55	71.95	-0.77	0.76	0.874420
7032	dm3.chr3L	11,627,357 – 11,627,506	- - - intron="intron;ID=intron_CG32091:1_CG32091:2;Name=CG32091-in;Parent=FBtr0076106;parent_type=mRNA" - - - -	9682	11,627,357 – 11,627,474	+	5	117	83.58	-3.28	0.65	0.993741
				9683	11,627,357 – 11,627,474	-	5	117	83.58	-1.96	0.71	0.827762
				9684	11,627,397 – 11,627,506	+	5	117	77.51	-2.40	0.58	0.967661
				9685	11,627,397 – 11,627,506	-	5	117	77.51	-3.06	0.63	0.997247
7033	dm3.chr3L	11,645,674 – 11,645,738	- - - intron="intron;ID=intron_CG32085:5_CG32085:6;Name=CG32085-in;Parent=FBtr0076133;parent_type=mRNA" - - - -	9686	11,645,674 – 11,645,738	+	5	64	53.03	-0.53	0.39	0.517238
7034	dm3.chr3L	11,650,895 – 11,650,992	- - - intron="intron;ID=intron_CG32085:4_CG32085:5;Name=CG32085-in;Parent=FBtr0076133;parent_type=mRNA" - - - -	9687	11,650,895 – 11,650,992	+	6	110	75.93	-1.67	0.57	0.745194
7034	dm3.chr3L	11,650,895 – 11,650,992		9688	11,650,895 – 11,650,992	-	6	110	75.93	-2.32	0.58	0.972018
7035	dm3.chr3L	11,651,988 – 11,652,088	- - - intron="intron;ID=intron_CG32085:4_CG32085:5;Name=CG32085-in;Parent=FBtr0076133;parent_type=mRNA" - - - -	9689	11,651,988 – 11,652,088	+	6	106	87.95	-1.95	0.76	0.792152
7036	dm3.chr3L	11,653,880 – 11,654,067	- - - intron="intron;ID=intron_CG32085:4_CG32085:5;Name=CG32085-in;Parent=FBtr0076133;parent_type=mRNA" - - - -	9690	11,653,880 – 11,653,992	+	6	113	77.39	-1.32	0.58	0.554387
				9691	11,653,880 – 11,653,992	-	6	113	77.39	-1.38	0.62	0.734732
				9692	11,653,913 – 11,654,028	-	5	115	71.40	-1.53	0.48	0.684398
				9693	11,653,952 – 11,654,067	+	5	115	75.64	-1.63	0.53	0.618052
7037	dm3.chr3L	11,654,660 – 11,654,752	- - - intron="intron;ID=intron_CG32085:4_CG32085:5;Name=CG32085-in;Parent=FBtr0076133;parent_type=mRNA" - - - -	9694	11,654,660 – 11,654,752	-	6	120	65.92	-0.96	0.57	0.760701
7038	dm3.chr3L	11,666,171 – 11,666,236	- - - intron="intron;ID=intron_CG32085:2_CG32085:3;Name=CG32085-in;Parent=FBtr0076133;parent_type=mRNA" - - - -	9695	11,666,171 – 11,666,236	-	7	66	78.31	-1.39	0.59	0.667403
7039	dm3.chr3L	11,666,833 – 11,666,935	- - - intron="intron;ID=intron_CG32085:2_CG32085:3;Name=CG32085-in;Parent=FBtr0076133;parent_type=mRNA" - - - -	9696	11,666,833 – 11,666,935	+	6	120	77.82	-1.78	0.52	0.618903
7040	dm3.chr3L	11,667,867 – 11,667,958	- - CDS="CDS;ID=CDS_CG32085:2_296;Name=CG32085-cds;Parent=FBtr0076133;parent_type=mRNA" - - - - -	9697	11,667,867 – 11,667,958	+	8	98	65.22	-1.20	0.37	0.507910
7040	dm3.chr3L	11,667,867 – 11,667,958		9698	11,667,867 – 11,667,958	-	8	98	65.22	-1.78	0.35	0.867120
7041	dm3.chr3L	11,669,352 – 11,669,445	- - - intron="intron;ID=intron_CG32085:1_CG32085:2;Name=CG32085-in;Parent=FBtr0076133;parent_type=mRNA" - - - -	9699	11,669,352 – 11,669,445	+	5	104	78.13	-2.19	0.74	0.979195
7042	dm3.chr3L	11,671,644 – 11,671,753	- - - intron="intron;ID=intron_CG32085:1_CG32085:2;Name=CG32085-in;Parent=FBtr0076133;parent_type=mRNA" - - - -	9700	11,671,644 – 11,671,753	+	7	120	68.87	-1.08	0.49	0.739847
7043	dm3.chr3L	11,672,384 – 11,672,451	- - - intron="intron;ID=intron_CG32085:1_CG32085:2;Name=CG32085-in;Parent=FBtr0076133;parent_type=mRNA" - - - -	9701	11,672,384 – 11,672,451	-	5	68	68.69	-1.45	0.40	0.517725
7044	dm3.chr3L	11,673,713 – 11,673,819	- - - - - - - -	9702	11,673,713 – 11,673,819	-	5	117	89.12	-2.01	0.73	0.623070
7045	dm3.chr3L	11,675,060 – 11,675,292	- - - - - - - -	9703	11,675,060 – 11,675,174	+	6	115	68.97	-1.36	0.47	0.873908
				9704	11,675,099 – 11,675,213	+	6	116	71.69	-1.33	0.63	0.956651
				9705	11,675,174 – 11,675,292	-	6	120	77.81	-1.34	0.57	0.500000
7046	dm3.chr3L	11,694,449 – 11,694,557	- - - - - - - -	9706	11,694,449 – 11,694,557	-	11	120	68.95	-0.14	0.64	0.654805
7047	dm3.chr3L	11,696,922 – 11,697,020	- - - intron="intron;ID=intron_CG11658:2_CG11658:3;Name=CG11658-in;Parent=FBtr0076124,FBtr0076125,FBtr0076126,FBtr0076127,FBtr0076128;parent_type=mRNA" - - - -	9707	11,696,922 – 11,697,020	-	6	100	78.38	-1.91	0.50	0.680669
7048	dm3.chr3L	11,709,312 – 11,709,453	- - - - - - - -	9708	11,709,312 – 11,709,453	-	8	142	77.51	-1.66	0.53	0.730954
7049	dm3.chr3L	11,737,968 – 11,738,063	- - - intron="intron;ID=intron_FBgn0036202:9_FBgn0036202:8;Name=CG6024-in;Parent=FBtr0113164,FBtr0113165,FBtr0113166;parent_type=mRNA" - - - -	9709	11,737,968 – 11,738,063	+	6	103	60.15	-2.13	0.40	0.996005
7049	dm3.chr3L	11,737,968 – 11,738,063		9710	11,737,968 – 11,738,063	-	6	103	60.15	-1.32	0.39	0.910187
7050	dm3.chr3L	11,746,139 – 11,746,206	- - - intron="intron;ID=intron_FBgn0036202:9_FBgn0036202:8;Name=CG6024-in;Parent=FBtr0113164,FBtr0113165,FBtr0113166;parent_type=mRNA" - - - -	9711	11,746,139 – 11,746,206	-	10	72	73.71	-2.55	0.38	0.981263
7051	dm3.chr3L	11,748,237 – 11,748,319	- - - intron="intron;ID=intron_FBgn0036202:9_FBgn0036202:8;Name=CG6024-in;Parent=FBtr0113164,FBtr0113165,FBtr0113166;parent_type=mRNA" - - - -	9712	11,748,237 – 11,748,319	+	6	90	76.46	-2.21	0.50	0.903306
7052	dm3.chr3L	11,766,096 – 11,766,210	FBnoncoding="pre_miRNA;ID=FBtr0304290;Name=mir-314-RM;Parent=FBgn0262396;Alias=CR42933-RM;Dbxref=FlyBase_Annotation_IDs:CR42933-RM,miRBase:MI0000426" - - - "Rfam_10.0=RF00807;mir-314;AAFS01000446.1/64778-64866\|4.9e-28" - - "mirBase_v16=dme-mir-314\|1.8e-46"	9713	11,766,096 – 11,766,210	+	12	119	86.20	-2.61	0.66	0.973879
7052	dm3.chr3L	11,766,096 – 11,766,210		9714	11,766,096 – 11,766,210	-	12	119	86.20	-1.98	0.60	0.651960
7053	dm3.chr3L	11,775,974 – 11,776,073	- - - intron="intron;ID=intron_FBgn0015278:10_FBgn0015278:9;Name=Pi3K68D-in;Parent=FBtr0076087,FBtr0076088,FBtr0301816;parent_type=mRNA" - - - -	9715	11,775,974 – 11,776,073	+	13	115	56.91	-0.58	0.36	0.542370
7054	dm3.chr3L	11,792,223 – 11,792,326	- - - intron="intron;ID=intron_CG10361:3_CG10361:4;Name=CG10361-in;Parent=FBtr0076084;parent_type=mRNA" - - - -	9716	11,792,223 – 11,792,326	-	11	114	62.82	-0.61	0.52	0.898196
7055	dm3.chr3L	11,808,168 – 11,808,276	- - - - - - - -	9717	11,808,168 – 11,808,276	+	3	120	63.22	-1.42	0.62	0.919553
7055	dm3.chr3L	11,808,168 – 11,808,276	- - - - - - - -	9718	11,808,168 – 11,808,276	-	3	120	63.22	-1.28	0.51	0.575803
7056	dm3.chr3L	11,815,135 – 11,815,190	- - - - - - - -	9719	11,815,135 – 11,815,190	+	3	58	91.95	-1.18	1.00	0.866285
7056	dm3.chr3L	11,815,135 – 11,815,190	- - - - - - - -	9720	11,815,135 – 11,815,190	-	3	58	91.95	-1.51	1.00	0.941928
7057	dm3.chr3L	11,816,488 – 11,816,585	- - - intron="intron;ID=intron_FBgn0036213:3_FBgn0036213:5;Name=RpL10Ab-in;Parent=FBtr0076032,FBtr0304648;parent_type=mRNA" - - - -	9721	11,816,488 – 11,816,585	+	13	108	58.99	-1.22	0.38	0.957621
7058	dm3.chr3L	11,854,480 – 11,854,598	- - - intron="intron;ID=intron_FBgn0085449:3_FBgn0085449:2;Name=CG34420-in;Parent=FBtr0112716;parent_type=mRNA" - - - -	9722	11,854,480 – 11,854,598	-	5	120	77.44	-1.89	0.55	0.696406
7059	dm3.chr3L	11,857,600 – 11,857,705	- - - - - - - -	9723	11,857,600 – 11,857,705	+	4	131	77.54	-2.33	0.63	0.949689
7059	dm3.chr3L	11,857,600 – 11,857,705	- - - - - - - -	9724	11,857,600 – 11,857,705	-	4	131	77.54	-4.40	0.64	0.999645
7060	dm3.chr3L	11,860,101 – 11,860,194	- - - - - - - -	9725	11,860,101 – 11,860,194	-	7	97	60.06	-1.22	0.39	0.920247
7061	dm3.chr3L	11,860,534 – 11,860,625	- - - - - - - -	9726	11,860,534 – 11,860,625	+	3	91	70.70	-2.77	0.39	0.828399
7062	dm3.chr3L	11,872,478 – 11,872,611	- - - intron="intron;ID=intron_FBgn0036218:2_FBgn0036218:5;Name=CG14128-in;Parent=FBtr0300722,FBtr0300724;parent_type=mRNA" - - - -	9727	11,872,478 – 11,872,579	-	6	120	68.89	-1.66	0.37	0.566896
7062	dm3.chr3L	11,872,478 – 11,872,611		9728	11,872,517 – 11,872,611	+	6	120	70.11	-1.88	0.48	0.924468
7063	dm3.chr3L	11,875,091 – 11,875,194	- - - - - - - -	9729	11,875,091 – 11,875,194	-	10	118	68.17	-1.54	0.35	0.644380
7064	dm3.chr3L	11,878,849 – 11,878,961	- - - - - - - -	9730	11,878,849 – 11,878,961	+	5	116	74.33	-1.58	0.71	0.942389
7065	dm3.chr3L	11,889,669 – 11,889,759	- - - - - - - -	9731	11,889,669 – 11,889,759	-	4	90	77.39	-2.08	0.58	0.751304
7066	dm3.chr3L	11,889,818 – 11,889,919	- - - - - - - -	9732	11,889,818 – 11,889,919	-	8	108	82.30	-1.75	0.57	0.518458
7067	dm3.chr3L	11,897,457 – 11,897,551	- - - - - - - -	9733	11,897,457 – 11,897,551	-	6	107	74.06	-1.47	0.53	0.722950
7068	dm3.chr3L	11,899,019 – 11,899,075	- - - - - - - -	9734	11,899,019 – 11,899,075	+	5	56	88.57	-2.65	0.82	0.980068
7068	dm3.chr3L	11,899,019 – 11,899,075	- - - - - - - -	9735	11,899,019 – 11,899,075	-	5	56	88.57	-2.08	0.74	0.739998
7069	dm3.chr3L	11,899,437 – 11,899,552	- - - - - - - -	9736	11,899,437 – 11,899,545	-	12	120	74.45	-2.55	0.42	0.981744
7069	dm3.chr3L	11,899,437 – 11,899,552	- - - - - - - -	9737	11,899,444 – 11,899,552	-	12	117	76.57	-2.73	0.43	0.982770
7070	dm3.chr3L	11,911,243 – 11,911,361	- - - - - - - -	9738	11,911,243 – 11,911,361	+	6	120	69.44	-0.99	0.48	0.630500
7071	dm3.chr3L	11,914,396 – 11,914,509	- - - - - - - -	9739	11,914,396 – 11,914,509	+	6	121	62.37	-1.42	0.38	0.662959
7072	dm3.chr3L	11,921,680 – 11,921,771	- - - - - - - -	9740	11,921,680 – 11,921,771	+	5	95	78.78	-1.61	0.78	0.913862
7072	dm3.chr3L	11,921,680 – 11,921,771	- - - - - - - -	9741	11,921,680 – 11,921,771	-	5	95	78.78	-1.50	0.74	0.826310
7073	dm3.chr3L	11,932,855 – 11,932,950	- - - - - - - -	9742	11,932,855 – 11,932,950	-	9	115	64.22	-1.49	0.45	0.971078
7074	dm3.chr3L	11,939,171 – 11,939,307	FBnoncoding="pre_miRNA;ID=FBtr0304307;Name=mir-285-RM;Parent=FBgn0262401;Alias=CR42941-RM;Dbxref=FlyBase_Annotation_IDs:CR42941-RM,miRBase:MI0000377" - - - - - - "mirBase_v16=dme-mir-285\|9.5e-52"	9743	11,939,171 – 11,939,276	+	11	118	77.99	-1.22	0.69	0.820691
				9744	11,939,171 – 11,939,276	-	11	118	77.99	-2.10	0.72	0.990654
				9745	11,939,209 – 11,939,307	+	11	112	77.58	-2.19	0.75	0.994000
				9746	11,939,209 – 11,939,307	-	11	112	77.58	-3.65	0.82	0.999522
7075	dm3.chr3L	11,969,309 – 11,969,419	- - CDS="CDS;ID=CDS_CG6947:2_295;Name=CG6947-cds;Parent=FBtr0076045;parent_type=mRNA" - - - - -	9747	11,969,309 – 11,969,419	+	12	117	70.60	-1.36	0.53	0.956923
7076	dm3.chr3L	11,997,158 – 11,997,267	- - - intron="intron;ID=intron_CG6928:1_CG6928:2;Name=CG6928-in;Parent=FBtr0076049;parent_type=mRNA" - - - -	9748	11,997,158 – 11,997,267	-	4	109	85.46	-2.43	0.79	0.962051
7077	dm3.chr3L	12,006,830 – 12,006,976	- - - intron="intron;ID=intron_CG32096:4_CG32096:5;Name=rols-in;Parent=FBtr0076053,FBtr0076054,FBtr0076055,FBtr0076056,FBtr0076057;parent_type=mRNA" - - - -	9749	12,006,830 – 12,006,936	-	5	107	92.88	-2.37	0.84	0.933166
7077	dm3.chr3L	12,006,830 – 12,006,976		9750	12,006,856 – 12,006,976	-	5	120	93.50	-1.73	0.84	0.602232
7078	dm3.chr3L	12,007,832 – 12,007,931	- - - intron="intron;ID=intron_CG32096:4_CG32096:5;Name=rols-in;Parent=FBtr0076053,FBtr0076054,FBtr0076055,FBtr0076056,FBtr0076057;parent_type=mRNA" - - - -	9751	12,007,832 – 12,007,931	+	6	115	77.23	-3.60	0.70	0.999390
7078	dm3.chr3L	12,007,832 – 12,007,931		9752	12,007,832 – 12,007,931	-	6	115	77.23	-3.41	0.83	0.999167
7079	dm3.chr3L	12,011,704 – 12,011,801	- - - intron="intron;ID=intron_CG32096:4_CG32096:5;Name=rols-in;Parent=FBtr0076053,FBtr0076054,FBtr0076055,FBtr0076056,FBtr0076057;parent_type=mRNA" - - - -	9753	12,011,704 – 12,011,801	+	11	101	77.30	-0.82	0.92	0.891913
7080	dm3.chr3L	12,020,393 – 12,020,504	- - - intron="intron;ID=intron_CG32096:3_CG32096:4;Name=rols-in;Parent=FBtr0076053,FBtr0076054,FBtr0076055,FBtr0076056,FBtr0076057;parent_type=mRNA" - - - -	9754	12,020,393 – 12,020,504	-	6	131	76.47	-1.78	0.52	0.729255
7081	dm3.chr3L	12,023,496 – 12,023,609	- - - intron="intron;ID=intron_CG32096:9_CG32096:3;Name=rols-in;Parent=FBtr0076054;parent_type=mRNA" - - - -	9755	12,023,496 – 12,023,609	+	6	114	72.74	-2.61	0.44	0.987952
7081	dm3.chr3L	12,023,496 – 12,023,609		9756	12,023,496 – 12,023,609	-	6	114	72.74	-1.75	0.47	0.864481
7082	dm3.chr3L	12,024,262 – 12,024,355	- - - intron="intron;ID=intron_CG32096:9_CG32096:3;Name=rols-in;Parent=FBtr0076054;parent_type=mRNA" - - - -	9757	12,024,262 – 12,024,355	-	5	99	81.62	-2.16	0.67	0.909657
7083	dm3.chr3L	12,033,984 – 12,034,068	- - - intron="intron;ID=intron_CG32096:9_CG32096:3;Name=rols-in;Parent=FBtr0076054;parent_type=mRNA" - - - -	9758	12,033,984 – 12,034,068	-	7	84	73.68	-1.44	0.48	0.523339
7084	dm3.chr3L	12,047,177 – 12,047,239	- - - - - - - -	9759	12,047,177 – 12,047,239	+	5	71	70.92	-1.88	0.43	0.633009
7085	dm3.chr3L	12,049,932 – 12,050,028	- - - - - - - -	9760	12,049,932 – 12,050,028	+	5	118	62.53	-1.26	0.49	0.772289
7086	dm3.chr3L	12,067,608 – 12,067,698	- - - intron="intron;ID=intron_FBgn0250876:11_FBgn0250876:10;Name=Sema-5c-in;Parent=FBtr0076052,FBtr0300339;parent_type=mRNA" - - - -	9761	12,067,608 – 12,067,698	-	4	103	78.19	-2.31	0.57	0.867254
7087	dm3.chr3L	12,071,360 – 12,071,453	- - - intron="intron;ID=intron_FBgn0250876:11_FBgn0250876:10;Name=Sema-5c-in;Parent=FBtr0076052,FBtr0300339;parent_type=mRNA" - - - -	9762	12,071,360 – 12,071,453	-	4	115	74.43	-2.04	0.49	0.642227
7088	dm3.chr3L	12,086,018 – 12,086,108	- - - - - - - -	9763	12,086,018 – 12,086,108	-	6	92	92.19	-1.88	0.89	0.898239
7089	dm3.chr3L	12,086,224 – 12,086,319	- - - - - - - -	9764	12,086,224 – 12,086,319	-	4	95	92.73	-2.39	0.87	0.953286
7090	dm3.chr3L	12,122,129 – 12,122,275	- - - - - - - -	9765	12,122,129 – 12,122,227	-	5	109	57.32	-0.93	0.37	0.555272
7090	dm3.chr3L	12,122,129 – 12,122,275	- - - - - - - -	9766	12,122,172 – 12,122,275	-	4	106	79.74	-1.91	0.60	0.641880
7091	dm3.chr3L	12,165,125 – 12,165,248	- - - intron="intron;ID=intron_CG5638:1_CG5638:2;Name=Rh7-in;Parent=FBtr0076020;parent_type=mRNA" - - - -	9767	12,165,125 – 12,165,217	+	4	92	88.91	-2.33	0.85	0.960080
				9768	12,165,125 – 12,165,217	-	4	92	88.91	-1.67	0.88	0.839028
				9769	12,165,153 – 12,165,248	+	4	95	91.10	-2.89	0.80	0.976603
				9770	12,165,153 – 12,165,248	-	4	95	91.10	-2.55	0.81	0.946907
7092	dm3.chr3L	12,165,952 – 12,166,007	- - - intron="intron;ID=intron_CG5638:1_CG5638:2;Name=Rh7-in;Parent=FBtr0076020;parent_type=mRNA" - - - -	9771	12,165,952 – 12,166,007	-	5	62	73.63	-1.25	0.68	0.729131
7093	dm3.chr3L	12,168,844 – 12,168,980	- - - - - - - -	9772	12,168,844 – 12,168,980	-	6	141	77.67	-1.93	0.46	0.628704
7094	dm3.chr3L	12,170,384 – 12,170,434	- - - - - - - -	9773	12,170,384 – 12,170,434	-	4	50	91.67	-2.51	0.94	0.989133
7095	dm3.chr3L	12,200,758 – 12,200,872	- - CDS="CDS;ID=CDS_FBgn0260941:1_459;Name=app-cds;Parent=FBtr0304662;parent_type=mRNA" - - - - -	9774	12,200,758 – 12,200,872	-	12	120	77.39	-1.57	0.45	0.537168
7096	dm3.chr3L	12,202,338 – 12,202,467	- - - intron="intron;ID=intron_FBgn0260941:3_FBgn0260941:1;Name=app-in;Parent=FBtr0301056,FBtr0301057,FBtr0304660,FBtr0304662;parent_type=mRNA" - - - -	9775	12,202,338 – 12,202,431	-	5	93	81.87	-1.77	0.77	0.878343
7096	dm3.chr3L	12,202,338 – 12,202,467		9776	12,202,376 – 12,202,467	-	7	111	67.10	-1.53	0.55	0.942261
7097	dm3.chr3L	12,204,327 – 12,204,438	- - - intron="intron;ID=intron_FBgn0260941:3_FBgn0260941:1;Name=app-in;Parent=FBtr0301056,FBtr0301057,FBtr0304660,FBtr0304662;parent_type=mRNA" - - - -	9777	12,204,327 – 12,204,438	-	5	117	90.28	-1.89	0.77	0.612873
7098	dm3.chr3L	12,208,062 – 12,208,120	- - - intron="intron;ID=intron_FBgn0260941:10_FBgn0260941:9;Name=app-in;Parent=FBtr0304662;parent_type=mRNA" - - - -	9778	12,208,062 – 12,208,120	+	3	60	74.12	-1.94	0.89	0.981631
7099	dm3.chr3L	12,212,083 – 12,212,197	- - - intron="intron;ID=intron_FBgn0260941:13_FBgn0260941:12;Name=app-in;Parent=FBtr0301052,FBtr0301053,FBtr0301054,FBtr0301055,FBtr0301056,FBtr0301057,FBtr0304661,FBtr0304662;parent_type=mRNA" - - - -	9779	12,212,083 – 12,212,180	-	5	98	87.78	-2.38	0.71	0.884377
7099	dm3.chr3L	12,212,083 – 12,212,197		9780	12,212,102 – 12,212,197	-	5	95	91.79	-2.23	0.79	0.834369
7100	dm3.chr3L	12,215,953 – 12,216,043	- - - intron="intron;ID=intron_FBgn0260941:14_FBgn0260941:13;Name=app-in;Parent=FBtr0301052,FBtr0301054,FBtr0301056;parent_type=mRNA" - - - -	9781	12,215,953 – 12,216,043	-	9	100	67.37	-0.84	0.56	0.924073
7101	dm3.chr3L	12,227,508 – 12,227,574	- - - intron="intron;ID=intron_FBgn0260941:14_FBgn0260941:13;Name=app-in;Parent=FBtr0301052,FBtr0301054,FBtr0301056;parent_type=mRNA" - - - -	9782	12,227,508 – 12,227,574	+	7	68	81.30	-1.36	0.71	0.694508
7102	dm3.chr3L	12,232,069 – 12,232,141	- - - intron="intron;ID=intron_FBgn0260941:14_FBgn0260941:13;Name=app-in;Parent=FBtr0301052,FBtr0301054,FBtr0301056;parent_type=mRNA" - - - -	9783	12,232,069 – 12,232,141	+	8	79	78.05	-2.07	0.46	0.726343
7103	dm3.chr3L	12,237,088 – 12,237,149	- - - intron="intron;ID=intron_FBgn0260941:15_FBgn0260941:14;Name=app-in;Parent=FBtr0301052,FBtr0301054,FBtr0301056;parent_type=mRNA" - - - -	9784	12,237,088 – 12,237,149	-	7	65	71.54	-1.82	0.48	0.938164
7104	dm3.chr3L	12,238,067 – 12,238,141	- - - intron="intron;ID=intron_FBgn0260941:15_FBgn0260941:14;Name=app-in;Parent=FBtr0301052,FBtr0301054,FBtr0301056;parent_type=mRNA" - - - -	9785	12,238,067 – 12,238,141	-	5	74	94.73	-1.71	0.84	0.526118
7105	dm3.chr3L	12,241,089 – 12,241,141	- - - intron="intron;ID=intron_FBgn0260941:15_FBgn0260941:14;Name=app-in;Parent=FBtr0301052,FBtr0301054,FBtr0301056;parent_type=mRNA" - - - -	9786	12,241,089 – 12,241,141	+	3	52	94.81	-1.38	0.91	0.550763
7106	dm3.chr3L	12,247,329 – 12,247,391	- - - intron="intron;ID=intron_FBgn0260941:15_FBgn0260941:14;Name=app-in;Parent=FBtr0301052,FBtr0301054,FBtr0301056;parent_type=mRNA" - - - -	9787	12,247,329 – 12,247,391	-	4	62	87.37	-1.30	0.86	0.596235
7107	dm3.chr3L	12,249,243 – 12,249,383	- - - intron="intron;ID=intron_FBgn0260941:15_FBgn0260941:14;Name=app-in;Parent=FBtr0301052,FBtr0301054,FBtr0301056;parent_type=mRNA" - - - -	9788	12,249,243 – 12,249,349	+	7	118	72.15	-2.43	0.40	0.963065
				9789	12,249,243 – 12,249,349	-	7	118	72.15	-2.27	0.39	0.925243
				9790	12,249,283 – 12,249,383	-	6	114	75.25	-1.96	0.46	0.750202
7108	dm3.chr3L	12,252,025 – 12,252,117	- - - intron="intron;ID=intron_FBgn0260941:15_FBgn0260941:14;Name=app-in;Parent=FBtr0301052,FBtr0301054,FBtr0301056;parent_type=mRNA" - - - -	9791	12,252,025 – 12,252,117	+	6	100	72.89	-1.02	0.63	0.614532
7109	dm3.chr3L	12,260,396 – 12,260,494	- - - - - - - -	9792	12,260,396 – 12,260,494	+	3	102	90.20	-2.05	0.74	0.510755
7110	dm3.chr3L	12,277,858 – 12,277,965	- - - - - - - -	9793	12,277,858 – 12,277,965	-	12	114	73.05	-1.94	0.42	0.924915
7111	dm3.chr3L	12,280,461 – 12,280,573	- - - - - - - -	9794	12,280,461 – 12,280,573	+	9	119	76.94	-1.13	0.64	0.710628
7112	dm3.chr3L	12,281,376 – 12,281,450	- - - - - - - -	9795	12,281,376 – 12,281,450	+	3	74	97.30	-2.01	1.00	0.974975
7113	dm3.chr3L	12,294,173 – 12,294,275	- - - - - - - -	9796	12,294,173 – 12,294,275	+	10	106	90.67	-2.44	0.82	0.964077
7114	dm3.chr3L	12,295,866 – 12,295,965	- - - - - - - -	9797	12,295,866 – 12,295,965	-	10	108	78.70	-1.94	0.49	0.522916
7115	dm3.chr3L	12,304,171 – 12,304,292	- - - - - - - -	9798	12,304,171 – 12,304,281	-	10	111	91.96	-2.51	0.84	0.967927
7115	dm3.chr3L	12,304,171 – 12,304,292	- - - - - - - -	9799	12,304,173 – 12,304,292	-	10	120	92.86	-3.29	0.87	0.995573
7116	dm3.chr3L	12,324,434 – 12,324,526	- - - intron="intron;ID=intron_CG32105:1_CG32105:2;Name=CG32105-in;Parent=FBtr0075953;parent_type=mRNA" - - - -	9800	12,324,434 – 12,324,526	+	9	112	72.81	-1.57	0.53	0.859706
7117	dm3.chr3L	12,326,965 – 12,327,029	- - - intron="intron;ID=intron_CG32105:1_CG32105:2;Name=CG32105-in;Parent=FBtr0075953;parent_type=mRNA" - - - -	9801	12,326,965 – 12,327,029	+	10	64	83.01	-2.78	0.54	0.976929
7117	dm3.chr3L	12,326,965 – 12,327,029		9802	12,326,965 – 12,327,029	-	10	64	83.01	-2.95	0.77	0.997682
7118	dm3.chr3L	12,345,193 – 12,345,276	- - - - - - - -	9803	12,345,193 – 12,345,276	+	5	84	92.71	-1.76	0.93	0.913785
7119	dm3.chr3L	12,360,716 – 12,360,829	- - - - - - - -	9804	12,360,716 – 12,360,829	+	7	116	69.16	-2.04	0.32	0.754229
7119	dm3.chr3L	12,360,716 – 12,360,829	- - - - - - - -	9805	12,360,716 – 12,360,829	-	7	116	69.16	-1.22	0.56	0.930967
7120	dm3.chr3L	12,373,639 – 12,373,709	- - - intron="intron;ID=intron_CG4357:18_CG4357:2;Name=Ncc69-in;Parent=FBtr0075988;parent_type=mRNA" - - - -	9806	12,373,639 – 12,373,709	-	5	70	84.29	-2.24	0.82	0.966773
7121	dm3.chr3L	12,376,172 – 12,376,265	- - - intron="intron;ID=intron_CG4357:18_CG4357:2;Name=Ncc69-in;Parent=FBtr0075988;parent_type=mRNA" - - - -	9807	12,376,172 – 12,376,265	+	8	94	82.64	-2.36	0.80	0.989210
7122	dm3.chr3L	12,378,149 – 12,378,279	- - - intron="intron;ID=intron_CG4357:18_CG4357:2;Name=Ncc69-in;Parent=FBtr0075988;parent_type=mRNA" - - - -	9808	12,378,149 – 12,378,279	+	12	152	69.32	-1.75	0.34	0.698872
7123	dm3.chr3L	12,381,259 – 12,381,376	- - - - - - - -	9809	12,381,259 – 12,381,376	+	5	120	85.97	-2.26	0.65	0.787263
7124	dm3.chr3L	12,383,248 – 12,383,349	- - - - - - - -	9810	12,383,248 – 12,383,349	+	5	105	91.28	-1.82	0.87	0.836369
7125	dm3.chr3L	12,383,658 – 12,383,767	- - - - - - - -	9811	12,383,658 – 12,383,767	-	6	120	66.91	-1.41	0.43	0.662975
7126	dm3.chr3L	12,396,081 – 12,396,173	- - - - - - - -	9812	12,396,081 – 12,396,173	+	11	110	86.50	-3.42	0.49	0.970531
7127	dm3.chr3L	12,399,323 – 12,399,488	- - - intron="intron;ID=intron_CG32103:9_CG32103:6;Name=CG32103-in;Parent=FBtr0075983;parent_type=mRNA" - - - -	9813	12,399,323 – 12,399,432	-	5	110	94.80	-1.81	0.89	0.798740
7127	dm3.chr3L	12,399,323 – 12,399,488		9814	12,399,396 – 12,399,488	-	5	104	81.33	-1.88	0.68	0.788336
7128	dm3.chr3L	12,404,785 – 12,404,889	- - - - - - - -	9815	12,404,785 – 12,404,889	-	12	112	67.63	-0.37	0.53	0.646195
7129	dm3.chr3L	12,407,626 – 12,407,698	- - - - - - - -	9816	12,407,626 – 12,407,698	+	10	79	70.38	-0.85	0.56	0.822608
7129	dm3.chr3L	12,407,626 – 12,407,698	- - - - - - - -	9817	12,407,626 – 12,407,698	-	10	79	70.38	-1.27	0.41	0.607002
7130	dm3.chr3L	12,413,146 – 12,413,240	- - - - - - - -	9818	12,413,146 – 12,413,240	-	10	114	71.55	-1.64	0.44	0.749591
7131	dm3.chr3L	12,413,564 – 12,413,623	- - - - - - - -	9819	12,413,564 – 12,413,623	+	12	61	85.58	-1.64	0.91	0.959576
7132	dm3.chr3L	12,419,876 – 12,419,926	- - - intron="intron;ID=intron_CG10704:2_CG10704:3;Name=toe-in;Parent=FBtr0075980;parent_type=mRNA" - - - -	9820	12,419,876 – 12,419,926	-	9	56	80.52	-1.67	0.85	0.970058
7133	dm3.chr3L	12,426,794 – 12,426,896	- - - - - - - -	9821	12,426,794 – 12,426,896	+	6	103	88.21	-1.49	0.79	0.546853
7133	dm3.chr3L	12,426,794 – 12,426,896	- - - - - - - -	9822	12,426,794 – 12,426,896	-	6	103	88.21	-1.69	0.87	0.890126
7134	dm3.chr3L	12,434,559 – 12,434,649	- - - - - - - -	9823	12,434,559 – 12,434,649	-	7	101	70.71	-1.11	0.63	0.881661
7135	dm3.chr3L	12,438,921 – 12,439,027	- - - - - - - -	9824	12,438,921 – 12,439,027	+	5	107	88.69	-1.93	0.75	0.644911
7136	dm3.chr3L	12,449,167 – 12,449,232	- - - - - - - -	9825	12,449,167 – 12,449,232	+	3	65	92.82	-1.88	0.91	0.890162
7137	dm3.chr3L	12,480,103 – 12,480,205	- - CDS="CDS;ID=CDS_FBgn0036288:1_363;Name=CG10660-cds;Parent=FBtr0075976;parent_type=mRNA" - - - - -	9826	12,480,103 – 12,480,205	-	12	111	76.70	-1.75	0.41	0.513322
7138	dm3.chr3L	12,487,604 – 12,487,694	- - - intron="intron;ID=intron_CG10657:1_CG10657:2;Name=CG10657-in;Parent=FBtr0075975;parent_type=mRNA" - - - -	9827	12,487,604 – 12,487,694	+	5	92	59.30	-1.70	0.31	0.809957
7138	dm3.chr3L	12,487,604 – 12,487,694		9828	12,487,604 – 12,487,694	-	5	92	59.30	-0.86	0.39	0.500000
7139	dm3.chr3L	12,488,838 – 12,488,929	- - - intron="intron;ID=intron_CG10657:1_CG10657:2;Name=CG10657-in;Parent=FBtr0075975;parent_type=mRNA" - - - -	9829	12,488,838 – 12,488,929	+	6	91	91.34	-2.46	0.80	0.938608
7140	dm3.chr3L	12,489,508 – 12,489,642	- - - intron="intron;ID=intron_CG10657:1_CG10657:2;Name=CG10657-in;Parent=FBtr0075975;parent_type=mRNA" - - - -	9830	12,489,508 – 12,489,642	+	5	151	81.40	-1.56	0.67	0.538962
7141	dm3.chr3L	12,503,251 – 12,503,347	- - CDS="CDS;ID=CDS_CG10522:6_313;Name=sti-cds;Parent=FBtr0075970;parent_type=mRNA" - - - - -	9831	12,503,251 – 12,503,347	+	11	96	67.57	-0.78	0.43	0.511301
7142	dm3.chr3L	12,516,420 – 12,516,540	- - CDS="CDS;ID=CDS_FBgn0020388:3_438;Name=Pcaf-cds;Parent=FBtr0075969;parent_type=mRNA" - - - - -	9832	12,516,420 – 12,516,540	-	14	120	77.17	-1.71	0.44	0.737301
7143	dm3.chr3L	12,522,746 – 12,522,817	- - - intron="intron;ID=intron_CG10627:1_CG10627:2;Name=CG10627-in;Parent=FBtr0075967;parent_type=mRNA" - - - -	9833	12,522,746 – 12,522,817	+	7	77	60.29	-0.54	0.45	0.687466
7144	dm3.chr3L	12,537,556 – 12,537,652	- - - intron="intron;ID=intron_FBgn0036302:11_FBgn0036302:10;Name=sowah-in;Parent=FBtr0300887,FBtr0300888,FBtr0300889;parent_type=mRNA" - - - -	9834	12,537,556 – 12,537,652	+	7	99	64.52	-1.29	0.38	0.744655
7145	dm3.chr3L	12,539,544 – 12,539,650	- - - intron="intron;ID=intron_FBgn0036302:12_FBgn0036302:11;Name=sowah-in;Parent=FBtr0300887,FBtr0300888,FBtr0300889;parent_type=mRNA" - - - -	9835	12,539,544 – 12,539,650	+	12	119	86.87	-1.46	0.75	0.568146
7145	dm3.chr3L	12,539,544 – 12,539,650		9836	12,539,544 – 12,539,650	-	12	119	86.87	-1.80	0.70	0.697413
7146	dm3.chr3L	12,545,362 – 12,545,460	- - - intron="intron;ID=intron_FBgn0036302:14_FBgn0036302:12;Name=sowah-in;Parent=FBtr0300887,FBtr0300888,FBtr0300889;parent_type=mRNA" - - - -	9837	12,545,362 – 12,545,460	+	4	103	85.22	-1.37	0.83	0.593206
7147	dm3.chr3L	12,554,485 – 12,554,603	- - - intron="intron;ID=intron_FBgn0036302:14_FBgn0036302:12;Name=sowah-in;Parent=FBtr0300887,FBtr0300888,FBtr0300889;parent_type=mRNA" - - - -	9838	12,554,485 – 12,554,580	+	10	101	67.80	-1.58	0.42	0.956611
7147	dm3.chr3L	12,554,485 – 12,554,603		9839	12,554,508 – 12,554,603	+	10	100	83.90	-2.28	0.52	0.732479
7148	dm3.chr3L	12,556,452 – 12,556,543	- - - intron="intron;ID=intron_FBgn0036302:14_FBgn0036302:12;Name=sowah-in;Parent=FBtr0300887,FBtr0300888,FBtr0300889;parent_type=mRNA" - - - -	9840	12,556,452 – 12,556,543	+	9	109	64.59	-1.03	0.41	0.619064
7148	dm3.chr3L	12,556,452 – 12,556,543		9841	12,556,452 – 12,556,543	-	9	109	64.59	-1.84	0.44	0.985228
7149	dm3.chr3L	12,558,151 – 12,558,241	- - - intron="intron;ID=intron_FBgn0036302:15_FBgn0036302:14;Name=sowah-in;Parent=FBtr0300887,FBtr0300888,FBtr0300889;parent_type=mRNA" - - - -	9842	12,558,151 – 12,558,241	-	7	99	71.28	-1.66	0.43	0.803470
7150	dm3.chr3L	12,563,876 – 12,563,942	- - - intron="intron;ID=intron_FBgn0036302:15_FBgn0036302:14;Name=sowah-in;Parent=FBtr0300887,FBtr0300888,FBtr0300889;parent_type=mRNA" - - - -	9843	12,563,876 – 12,563,942	-	7	71	63.25	-0.81	0.45	0.812702
7151	dm3.chr3L	12,567,477 – 12,567,575	- - - - - - - -	9844	12,567,477 – 12,567,575	+	10	111	67.21	-0.29	0.56	0.535927
7152	dm3.chr3L	12,570,486 – 12,570,545	- - - - - - - -	9845	12,570,486 – 12,570,545	+	12	59	96.45	-0.73	1.00	0.557184
7153	dm3.chr3L	12,573,552 – 12,573,648	- - - - - - - -	9846	12,573,552 – 12,573,648	-	5	101	85.16	-2.00	0.71	0.789086
7154	dm3.chr3L	12,586,031 – 12,586,138	- - - intron="intron;ID=intron_FBgn0015904:3_FBgn0015904:4;Name=ara-in;Parent=FBtr0075908;parent_type=mRNA" - - - -	9847	12,586,031 – 12,586,138	-	6	109	64.75	-0.89	0.47	0.718610
7155	dm3.chr3L	12,591,897 – 12,591,975	- - - - - - - -	9848	12,591,897 – 12,591,975	+	6	86	82.37	-1.48	0.73	0.618414
7156	dm3.chr3L	12,594,565 – 12,594,658	- - - - - - - -	9849	12,594,565 – 12,594,658	+	6	120	70.51	-1.86	0.44	0.785958
7156	dm3.chr3L	12,594,565 – 12,594,658	- - - - - - - -	9850	12,594,565 – 12,594,658	-	6	120	70.51	-2.00	0.55	0.972739
7157	dm3.chr3L	12,595,517 – 12,595,615	- - - - - - - -	9851	12,595,517 – 12,595,615	-	10	119	71.79	-1.26	0.58	0.929079
7158	dm3.chr3L	12,596,837 – 12,596,951	- - - - - - - -	9852	12,596,837 – 12,596,951	+	3	114	95.25	-1.76	0.88	0.681586
7158	dm3.chr3L	12,596,837 – 12,596,951	- - - - - - - -	9853	12,596,837 – 12,596,951	-	3	114	95.25	-1.99	0.98	0.968101
7159	dm3.chr3L	12,600,179 – 12,600,269	- - - - - - - -	9854	12,600,179 – 12,600,269	-	12	115	73.70	-0.80	0.81	0.867730
7160	dm3.chr3L	12,613,097 – 12,613,208	- - CDS="CDS;ID=CDS_CG10605:5_297;Name=caup-cds;Parent=FBtr0075909;parent_type=mRNA" - - - - -	9855	12,613,097 – 12,613,208	+	10	114	70.13	-0.65	0.51	0.551777
7160	dm3.chr3L	12,613,097 – 12,613,208		9856	12,613,097 – 12,613,208	-	10	114	70.13	-0.69	0.54	0.706129
7161	dm3.chr3L	12,618,043 – 12,618,138	- - - - - - - -	9857	12,618,043 – 12,618,138	+	5	95	69.86	-1.45	0.56	0.933092
7161	dm3.chr3L	12,618,043 – 12,618,138	- - - - - - - -	9858	12,618,043 – 12,618,138	-	5	95	69.86	-0.97	0.54	0.620695
7162	dm3.chr3L	12,618,796 – 12,618,890	- - - - - - - -	9859	12,618,796 – 12,618,890	-	3	116	75.70	-2.00	0.60	0.669609
7163	dm3.chr3L	12,626,061 – 12,626,157	- - - intron="intron;ID=intron_CG32111:1_CG32111:2;Name=CG32111-in;Parent=FBtr0075910;parent_type=mRNA" - - - -	9860	12,626,061 – 12,626,157	-	7	98	64.50	-1.02	0.55	0.945858
7164	dm3.chr3L	12,628,114 – 12,628,212	- - - intron="intron;ID=intron_CG32111:2_CG32111:3;Name=CG32111-in;Parent=FBtr0075910;parent_type=mRNA" - - - -	9861	12,628,114 – 12,628,212	+	7	103	83.41	-2.75	0.63	0.982608
7164	dm3.chr3L	12,628,114 – 12,628,212		9862	12,628,114 – 12,628,212	-	7	103	83.41	-1.61	0.67	0.632134
7165	dm3.chr3L	12,631,338 – 12,631,457	- - - intron="intron;ID=intron_CG32111:2_CG32111:3;Name=CG32111-in;Parent=FBtr0075910;parent_type=mRNA" - - - -	9863	12,631,338 – 12,631,436	-	6	98	83.28	-2.49	0.62	0.939354
7165	dm3.chr3L	12,631,338 – 12,631,457		9864	12,631,347 – 12,631,457	-	5	110	83.76	-3.32	0.80	0.997095
7166	dm3.chr3L	12,654,980 – 12,655,034	- - - - - - - -	9865	12,654,980 – 12,655,034	+	4	54	93.15	-0.64	1.00	0.543395
7167	dm3.chr3L	12,665,284 – 12,665,380	- - - - - - - -	9866	12,665,284 – 12,665,380	+	5	97	72.30	-1.37	0.58	0.844177
7168	dm3.chr3L	12,667,114 – 12,667,233	- - - - - - - -	9867	12,667,114 – 12,667,233	-	8	129	71.49	-1.43	0.44	0.576852
7169	dm3.chr3L	12,676,692 – 12,676,820	- - - - - - - -	9868	12,676,692 – 12,676,809	-	12	118	76.68	-1.20	0.54	0.652958
				9869	12,676,720 – 12,676,820	+	12	118	74.72	-1.52	0.43	0.522169
				9870	12,676,720 – 12,676,820	-	12	118	74.72	-1.47	0.50	0.767928
7170	dm3.chr3L	12,692,629 – 12,692,732	- - - intron="intron;ID=intron_CG10601:2_CG10601:3;Name=mirr-in;Parent=FBtr0075911,FBtr0075912;parent_type=mRNA" - - - -	9871	12,692,629 – 12,692,732	-	10	119	75.44	-2.41	0.42	0.890191
7171	dm3.chr3L	12,702,117 – 12,702,208	- - - - - - - -	9872	12,702,117 – 12,702,208	-	6	95	86.47	-1.29	0.84	0.621785
7172	dm3.chr3L	12,707,647 – 12,707,746	- - - - - - - -	9873	12,707,647 – 12,707,746	+	9	118	73.36	-1.27	0.58	0.824373
7172	dm3.chr3L	12,707,647 – 12,707,746	- - - - - - - -	9874	12,707,647 – 12,707,746	-	9	118	73.36	-1.48	0.46	0.596426
7173	dm3.chr3L	12,710,424 – 12,710,515	- - - - - - - -	9875	12,710,424 – 12,710,515	+	6	104	60.72	-1.77	0.36	0.959967
7174	dm3.chr3L	12,715,572 – 12,715,675	- - - - - - - -	9876	12,715,572 – 12,715,675	+	11	112	64.17	-1.98	0.26	0.835309
7174	dm3.chr3L	12,715,572 – 12,715,675	- - - - - - - -	9877	12,715,572 – 12,715,675	-	11	112	64.17	-2.26	0.22	0.842061
7175	dm3.chr3L	12,719,223 – 12,719,338	- - - - - - - -	9878	12,719,223 – 12,719,338	-	5	117	68.78	-1.35	0.55	0.905723
7176	dm3.chr3L	12,720,512 – 12,720,614	- - - - - - - -	9879	12,720,512 – 12,720,610	+	12	117	72.55	-1.34	0.47	0.671548
7176	dm3.chr3L	12,720,512 – 12,720,614	- - - - - - - -	9880	12,720,516 – 12,720,614	+	12	118	74.43	-1.57	0.47	0.691785
7177	dm3.chr3L	12,721,012 – 12,721,069	- - - - - - - -	9881	12,721,012 – 12,721,069	-	4	57	69.01	-0.67	0.69	0.631762
7178	dm3.chr3L	12,723,735 – 12,723,842	- - - - - - - -	9882	12,723,735 – 12,723,842	-	6	107	84.13	-1.42	0.86	0.845656
7179	dm3.chr3L	12,723,922 – 12,724,041	- - - - - - - -	9883	12,723,922 – 12,724,041	-	6	120	95.71	-1.57	0.89	0.621542
7180	dm3.chr3L	12,735,643 – 12,735,739	- - - intron="intron;ID=intron_FBgn0052112:2_FBgn0052112:4;Name=CG32112-in;Parent=FBtr0075917;parent_type=mRNA" - - - -	9884	12,735,643 – 12,735,739	+	7	98	60.54	-1.47	0.38	0.949821
7180	dm3.chr3L	12,735,643 – 12,735,739		9885	12,735,643 – 12,735,739	-	7	98	60.54	-1.26	0.45	0.973693
7181	dm3.chr3L	12,767,581 – 12,767,675	- - CDS="CDS;ID=CDS_CG32106:3_295;Name=CG32106-cds;Parent=FBtr0075947;parent_type=mRNA" - - - - -	9886	12,767,581 – 12,767,675	+	6	94	77.73	-1.07	0.77	0.818323
7182	dm3.chr3L	12,768,277 – 12,768,373	- - CDS="CDS;ID=CDS_CG32106:3_295;Name=CG32106-cds;Parent=FBtr0075947;parent_type=mRNA" - - - - -	9887	12,768,277 – 12,768,373	-	5	120	78.31	-1.78	0.73	0.885285
7183	dm3.chr3L	12,769,814 – 12,769,934	- - CDS="CDS;ID=CDS_CG32106:1_295;Name=CG32106-cds;Parent=FBtr0075947;parent_type=mRNA" - - - - -	9888	12,769,814 – 12,769,934	+	5	120	80.72	-2.20	0.55	0.781760
7184	dm3.chr3L	12,784,177 – 12,784,272	- - - intron="intron;ID=intron_FBgn0261626:2_FBgn0261626:4;Name=CG42709-in;Parent=FBtr0302980;parent_type=mRNA" - - - -	9889	12,784,177 – 12,784,272	+	5	107	71.41	-1.64	0.46	0.624902
7185	dm3.chr3L	12,785,404 – 12,785,509	- - - intron="intron;ID=intron_FBgn0261626:4_FBgn0261626:5;Name=CG42709-in;Parent=FBtr0302980,FBtr0302982;parent_type=mRNA" - - - -	9890	12,785,404 – 12,785,509	-	5	114	65.32	-0.67	0.62	0.891076
7186	dm3.chr3L	12,791,064 – 12,791,154	- - - intron="intron;ID=intron_FBgn0010715:15_FBgn0010715:13;Name=Atg1-in;Parent=FBtr0075945;parent_type=mRNA" - - - -	9891	12,791,064 – 12,791,154	+	6	93	72.82	-3.32	0.43	0.998172
7186	dm3.chr3L	12,791,064 – 12,791,154		9892	12,791,064 – 12,791,154	-	6	93	72.82	-2.82	0.34	0.957633
7187	dm3.chr3L	12,792,557 – 12,792,670	- - - intron="intron;ID=intron_FBgn0010715:15_FBgn0010715:13;Name=Atg1-in;Parent=FBtr0075945;parent_type=mRNA" - - - -	9893	12,792,557 – 12,792,670	-	6	115	83.85	-1.99	0.60	0.656524
7188	dm3.chr3L	12,803,517 – 12,803,634	- - CDS="CDS;ID=CDS_FBgn0027534:8_395;Name=Sap130-cds;Parent=FBtr0075929;parent_type=mRNA" - - - - -	9894	12,803,517 – 12,803,634	-	12	120	72.48	-1.68	0.35	0.543480
7189	dm3.chr3L	12,806,922 – 12,807,023	- - CDS="CDS;ID=CDS_FBgn0036314:1_305;Name=CG10754-cds;Parent=FBtr0075944;parent_type=mRNA" - - - - -	9895	12,806,922 – 12,807,023	-	13	120	78.18	-1.75	0.54	0.776114
7190	dm3.chr3L	12,824,707 – 12,824,802	- - - - - - - -	9896	12,824,707 – 12,824,802	-	7	118	67.97	-1.47	0.47	0.842191
7191	dm3.chr3L	12,827,648 – 12,827,738	- - - - - - - -	9897	12,827,648 – 12,827,738	-	11	104	63.82	-1.46	0.31	0.683153
7192	dm3.chr3L	12,829,025 – 12,829,140	- - - intron="intron;ID=intron_CG10960:1_CG10960:2;Name=CG10960-in;Parent=FBtr0075941;parent_type=mRNA" - - - -	9898	12,829,025 – 12,829,140	-	6	116	74.51	-1.47	0.62	0.912896
7193	dm3.chr3L	12,830,198 – 12,830,351	- - - intron="intron;ID=intron_CG10960:1_CG10960:2;Name=CG10960-in;Parent=FBtr0075941;parent_type=mRNA" - - - -	9899	12,830,198 – 12,830,351	-	5	168	63.79	-0.81	0.47	0.550498
7194	dm3.chr3L	12,838,696 – 12,838,801	- - - - - - - -	9900	12,838,696 – 12,838,801	+	12	119	70.99	-1.10	0.48	0.707037
7195	dm3.chr3L	12,858,676 – 12,858,795	- - - - - - - -	9901	12,858,676 – 12,858,795	+	5	120	71.62	-1.13	0.58	0.704169
7196	dm3.chr3L	12,909,733 – 12,909,831	- - - - - - - -	9902	12,909,733 – 12,909,831	-	10	114	81.02	-2.64	0.50	0.939618
7197	dm3.chr3L	12,917,270 – 12,917,344	- - - - - - - -	9903	12,917,270 – 12,917,344	-	5	77	61.93	-1.02	0.54	0.930979
7198	dm3.chr3L	12,917,951 – 12,918,043	- - - - - - - -	9904	12,917,951 – 12,918,043	-	12	111	77.15	-1.08	0.64	0.625171
7199	dm3.chr3L	12,923,193 – 12,923,306	- - - - - - - -	9905	12,923,193 – 12,923,306	+	5	113	95.55	-1.76	0.85	0.569693
7199	dm3.chr3L	12,923,193 – 12,923,306	- - - - - - - -	9906	12,923,193 – 12,923,306	-	5	113	95.55	-1.72	0.92	0.830690
7200	dm3.chr3L	12,924,926 – 12,925,031	- - - - - - - -	9907	12,924,926 – 12,925,031	+	10	107	84.56	-2.61	0.81	0.993095
7201	dm3.chr3L	12,945,640 – 12,945,695	- - - - - - - -	9908	12,945,640 – 12,945,695	+	13	56	90.26	-3.43	0.71	0.995447
7201	dm3.chr3L	12,945,640 – 12,945,695	- - - - - - - -	9909	12,945,640 – 12,945,695	-	13	56	90.26	-1.96	0.70	0.676939
7202	dm3.chr3L	12,961,245 – 12,961,336	- - - - - - - -	9910	12,961,245 – 12,961,336	-	7	96	70.41	-1.31	0.41	0.564231
7203	dm3.chr3L	12,962,673 – 12,962,732	- - - - - - - -	9911	12,962,673 – 12,962,732	+	6	61	97.21	-0.86	1.06	0.878814
7203	dm3.chr3L	12,962,673 – 12,962,732	- - - - - - - -	9912	12,962,673 – 12,962,732	-	6	61	97.21	-0.86	1.00	0.619449
7204	dm3.chr3L	12,968,650 – 12,968,745	- - - - - - - -	9913	12,968,650 – 12,968,745	+	8	100	88.79	-1.14	0.92	0.700097
7204	dm3.chr3L	12,968,650 – 12,968,745	- - - - - - - -	9914	12,968,650 – 12,968,745	-	8	100	88.79	-1.80	0.85	0.866998
7205	dm3.chr3L	12,970,085 – 12,970,178	- - - - - - - -	9915	12,970,085 – 12,970,178	+	8	104	77.67	-1.80	0.52	0.658161
7206	dm3.chr3L	12,985,981 – 12,986,232	- - - - - - - -	9916	12,985,981 – 12,986,083	+	11	117	74.57	-1.82	0.48	0.852260
				9917	12,986,083 – 12,986,232	+	5	178	67.37	-1.63	0.42	0.748693
				9918	12,986,083 – 12,986,232	-	5	178	67.37	-1.84	0.47	0.942495
7207	dm3.chr3L	12,987,639 – 12,987,737	- - - - - - - -	9919	12,987,639 – 12,987,737	+	5	100	81.47	-1.93	0.72	0.837614
7207	dm3.chr3L	12,987,639 – 12,987,737	- - - - - - - -	9920	12,987,639 – 12,987,737	-	5	100	81.47	-2.02	0.76	0.920059
7208	dm3.chr3L	12,993,857 – 12,993,921	- - - - - - - -	9921	12,993,857 – 12,993,921	+	6	64	92.50	-2.42	0.95	0.988939
7209	dm3.chr3L	12,996,879 – 12,996,954	- - - - - - - -	9922	12,996,879 – 12,996,954	-	6	75	72.35	-2.51	0.68	0.998529
7210	dm3.chr3L	13,002,060 – 13,002,180	- - CDS="CDS;ID=CDS_FBgn0036331:3_481;Name=CG14117-cds;Parent=FBtr0306091;parent_type=mRNA" - - - - -	9923	13,002,060 – 13,002,180	+	5	120	89.33	-1.74	0.77	0.533289
7211	dm3.chr3L	13,002,210 – 13,002,318	- - CDS="CDS;ID=CDS_FBgn0036331:3_481;Name=CG14117-cds;Parent=FBtr0306091;parent_type=mRNA" - - - - -	9924	13,002,210 – 13,002,318	-	6	117	76.10	-0.83	0.70	0.508836
7212	dm3.chr3L	13,013,595 – 13,013,737	- - CDS="CDS;ID=CDS_FBgn0036337:1_397;Name=CG11255-cds;Parent=FBtr0075895,FBtr0075896;parent_type=mRNA" - - - - -	9925	13,013,595 – 13,013,706	+	14	117	74.30	-1.66	0.37	0.623166
				9926	13,013,595 – 13,013,706	-	14	117	74.30	-2.37	0.36	0.950929
				9927	13,013,626 – 13,013,737	+	14	119	71.36	-2.42	0.37	0.983328
				9928	13,013,626 – 13,013,737	-	14	119	71.36	-2.87	0.38	0.996852
7213	dm3.chr3L	13,027,548 – 13,027,600	- - - intron="intron;ID=intron_FBgn0083978:1_FBgn0083978:2;Name=CG17672-in;Parent=FBtr0110982;parent_type=mRNA" - - - -	9929	13,027,548 – 13,027,600	-	6	55	79.42	-2.63	0.75	0.994870
7214	dm3.chr3L	13,035,868 – 13,036,003	FBnoncoding="snoRNA;ID=FBtr0113611;Name=snoRNA:Psi28S-3327a-RA;Parent=FBgn0082967;Dbxref=FlyBase_Annotation_IDs:CR34642-RA,REFSEQ:NR_003869;score_text=Weakly" - - intron="intron;ID=intron_CG11276:4_CG11276:5;Name=RpS4-in;Parent=FBtr0075884,FBtr0075885;parent_type=mRNA" "Rfam_10.0=RF00544;snopsi28S-3327;AABU01002770.1/10717553-10717695\|1.6e-71" - - -	9930	13,035,868 – 13,036,003	+	12	146	81.50	-1.92	0.76	0.965545
7215	dm3.chr3L	13,036,034 – 13,036,192	FBnoncoding="snoRNA;ID=FBtr0113612;Name=snoRNA:Psi28S-3327b-RA;Parent=FBgn0082966;Dbxref=FlyBase_Annotation_IDs:CR34643-RA,REFSEQ:NR_003870;score_text=Weakly" - - intron="intron;ID=intron_CG11276:4_CG11276:5;Name=RpS4-in;Parent=FBtr0075884,FBtr0075885;parent_type=mRNA" "Rfam_10.0=RF00544;snopsi28S-3327;AAKO01000106.1/32998-33140\|1.2e-66" "Noncode_2.0=n3528_u3155_AJ544026_snoRNA_Drosophila\|6.1e-16" "unique_Noncode_2.0=u3155_snoRNA_Drosophila\|5.3e-16" -	9931	13,036,034 – 13,036,192	+	12	191	63.83	-1.05	0.36	0.658832
7216	dm3.chr3L	13,037,410 – 13,037,523	- - - - - - - -	9932	13,037,410 – 13,037,523	+	5	120	82.87	-1.56	0.73	0.550274
7217	dm3.chr3L	13,057,581 – 13,057,713	- - - - - - - -	9933	13,057,581 – 13,057,691	-	12	117	79.02	-1.23	0.70	0.837933
7217	dm3.chr3L	13,057,581 – 13,057,713	- - - - - - - -	9934	13,057,614 – 13,057,713	-	12	115	87.88	-1.95	0.83	0.925048
7218	dm3.chr3L	13,058,570 – 13,058,637	- - - - - - - -	9935	13,058,570 – 13,058,637	+	5	67	93.99	-1.52	0.99	0.931128
7219	dm3.chr3L	13,071,320 – 13,071,449	- - - - - - - -	9936	13,071,320 – 13,071,422	+	6	108	82.44	-1.61	0.65	0.565364
7219	dm3.chr3L	13,071,320 – 13,071,449	- - - - - - - -	9937	13,071,354 – 13,071,449	+	6	95	82.88	-2.31	0.66	0.954671
7220	dm3.chr3L	13,090,888 – 13,090,985	- - - - - - - -	9938	13,090,888 – 13,090,985	-	6	119	81.80	-1.82	0.64	0.654079
7221	dm3.chr3L	13,092,258 – 13,092,350	- - - - - - - -	9939	13,092,258 – 13,092,350	+	7	92	90.48	-1.99	0.81	0.855829
7222	dm3.chr3L	13,110,567 – 13,110,727	- - - - - - - -	9940	13,110,567 – 13,110,668	+	11	116	69.78	-2.30	0.44	0.994902
				9941	13,110,598 – 13,110,698	+	12	114	73.74	-1.23	0.54	0.801895
				9942	13,110,635 – 13,110,727	+	7	102	74.57	-1.06	0.60	0.621176
7223	dm3.chr3L	13,126,320 – 13,126,420	- - - - - - - -	9943	13,126,320 – 13,126,420	+	8	119	77.66	-1.94	0.51	0.689519
7223	dm3.chr3L	13,126,320 – 13,126,420	- - - - - - - -	9944	13,126,320 – 13,126,420	-	8	119	77.66	-1.00	0.76	0.640678
7224	dm3.chr3L	13,140,016 – 13,140,109	- - - - - - - -	9945	13,140,016 – 13,140,109	+	11	113	81.78	-2.30	0.55	0.862142
7225	dm3.chr3L	13,147,614 – 13,147,707	- - - - - - - -	9946	13,147,614 – 13,147,707	+	8	107	76.89	-2.26	0.65	0.989807
7225	dm3.chr3L	13,147,614 – 13,147,707	- - - - - - - -	9947	13,147,614 – 13,147,707	-	8	107	76.89	-1.72	0.49	0.635978
7226	dm3.chr3L	13,157,750 – 13,157,853	- - - - - - - -	9948	13,157,750 – 13,157,853	+	3	116	81.49	-0.96	0.89	0.540940
7226	dm3.chr3L	13,157,750 – 13,157,853	- - - - - - - -	9949	13,157,750 – 13,157,853	-	3	116	81.49	-1.40	0.95	0.923654
7227	dm3.chr3L	13,176,006 – 13,176,118	- - - - - - - -	9950	13,176,006 – 13,176,118	-	3	112	99.40	-1.39	0.97	0.744707
7228	dm3.chr3L	13,176,392 – 13,176,570	- - - - - - - -	9951	13,176,392 – 13,176,471	+	12	82	79.50	-1.69	0.52	0.644950
7228	dm3.chr3L	13,176,392 – 13,176,570	- - - - - - - -	9952	13,176,471 – 13,176,570	+	5	99	93.29	-1.84	0.85	0.745822
7229	dm3.chr3L	13,177,542 – 13,177,639	- - - - - - - -	9953	13,177,542 – 13,177,639	-	10	98	78.61	-1.91	0.59	0.944825
7230	dm3.chr3L	13,182,910 – 13,183,044	- - - - - - - -	9954	13,182,910 – 13,183,022	+	10	116	78.61	-1.50	0.57	0.620029
				9955	13,182,910 – 13,183,022	-	10	116	78.61	-1.66	0.74	0.953491
				9956	13,182,950 – 13,183,044	+	11	116	76.03	-1.57	0.68	0.917276
7231	dm3.chr3L	13,191,604 – 13,191,697	- - - - - - - -	9957	13,191,604 – 13,191,697	+	4	99	71.92	-1.56	0.58	0.798893
7232	dm3.chr3L	13,199,109 – 13,199,206	- - - - - - - -	9958	13,199,109 – 13,199,206	-	10	97	83.74	-1.28	0.72	0.508661
7233	dm3.chr3L	13,204,313 – 13,204,388	FBnoncoding="tRNA;ID=FBtr0075828;Name=tRNA:CR32129-RA;Parent=FBgn0052129;Alias=CR32129-RA;Dbxref=FlyBase_Annotation_IDs:CR32129-RA;score_text=Weakly" tRNAscann="Pro_chr3L_trna22" - - "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|1.1e-24" - - -	9959	13,204,313 – 13,204,388	+	14	75	91.94	-1.60	0.93	0.925967
7233	dm3.chr3L	13,204,313 – 13,204,388		9960	13,204,313 – 13,204,388	-	14	75	91.94	-1.84	0.92	0.954383
7234	dm3.chr3L	13,205,457 – 13,205,568	FBnoncoding="tRNA;ID=FBtr0075830;Name=tRNA:CR32126-RA;Parent=FBgn0052126;Alias=CR32126-RA;Dbxref=FlyBase_Annotation_IDs:CR32126-RA;score_text=Weakly" tRNAscann="Pro_chr3L_trna24" - - "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|1.8e-24" - - -	9961	13,205,457 – 13,205,568	+	10	113	78.33	-0.63	0.95	0.830149
7234	dm3.chr3L	13,205,457 – 13,205,568		9962	13,205,457 – 13,205,568	-	10	113	78.33	-1.28	0.94	0.965166
7235	dm3.chr3L	13,209,198 – 13,209,293	- - - - - - - -	9963	13,209,198 – 13,209,293	+	6	95	92.00	-1.84	0.85	0.807672
7235	dm3.chr3L	13,209,198 – 13,209,293	- - - - - - - -	9964	13,209,198 – 13,209,293	-	6	95	92.00	-1.91	0.95	0.963527
7236	dm3.chr3L	13,226,600 – 13,226,652	- - - intron="intron;ID=intron_FBgn0023095:1_FBgn0023095:2;Name=caps-in;Parent=FBtr0075832,FBtr0075833,FBtr0305480;parent_type=mRNA" - - - -	9965	13,226,600 – 13,226,652	-	6	65	75.00	-2.04	0.86	0.991035
7237	dm3.chr3L	13,229,552 – 13,229,661	- - - intron="intron;ID=intron_FBgn0023095:1_FBgn0023095:2;Name=caps-in;Parent=FBtr0075832,FBtr0075833,FBtr0305480;parent_type=mRNA" - - - -	9966	13,229,552 – 13,229,661	+	5	121	65.67	-0.60	0.54	0.516602
7238	dm3.chr3L	13,242,342 – 13,242,410	- - - - - - - -	9967	13,242,342 – 13,242,410	+	6	75	60.06	-1.36	0.43	0.951173
7239	dm3.chr3L	13,246,866 – 13,246,964	- - - intron="intron;ID=intron_FBgn0023095:3_FBgn0023095:4;Name=caps-in;Parent=FBtr0075832,FBtr0305480;parent_type=mRNA" - - - -	9968	13,246,866 – 13,246,964	+	7	103	68.27	-0.73	0.53	0.648539
7240	dm3.chr3L	13,257,318 – 13,257,413	- - - intron="intron;ID=intron_FBgn0023095:3_FBgn0023095:4;Name=caps-in;Parent=FBtr0075832,FBtr0305480;parent_type=mRNA" - - - -	9969	13,257,318 – 13,257,413	-	9	118	81.05	-1.48	0.72	0.779907
7241	dm3.chr3L	13,257,595 – 13,257,693	- - - intron="intron;ID=intron_FBgn0023095:3_FBgn0023095:4;Name=caps-in;Parent=FBtr0075832,FBtr0305480;parent_type=mRNA" - - - -	9970	13,257,595 – 13,257,693	+	5	98	86.98	-2.30	0.67	0.784785
7242	dm3.chr3L	13,260,680 – 13,260,787	- - - intron="intron;ID=intron_FBgn0023095:4_FBgn0023095:5;Name=caps-in;Parent=FBtr0075832,FBtr0305480;parent_type=mRNA" - - - -	9971	13,260,680 – 13,260,787	+	5	107	83.11	-2.25	0.72	0.944840
7243	dm3.chr3L	13,265,019 – 13,265,113	- - - intron="intron;ID=intron_FBgn0023095:4_FBgn0023095:5;Name=caps-in;Parent=FBtr0075832,FBtr0305480;parent_type=mRNA" - - - -	9972	13,265,019 – 13,265,113	+	12	114	77.87	-1.36	0.66	0.847441
7243	dm3.chr3L	13,265,019 – 13,265,113		9973	13,265,019 – 13,265,113	-	12	114	77.87	-1.18	0.70	0.816854
7244	dm3.chr3L	13,270,900 – 13,271,010	- - - - - - - -	9974	13,270,900 – 13,271,010	-	12	113	75.81	-1.52	0.41	0.500000
7245	dm3.chr3L	13,271,279 – 13,271,382	- - - - - - - -	9975	13,271,279 – 13,271,382	+	6	117	59.81	-2.30	0.33	0.987070
7246	dm3.chr3L	13,273,739 – 13,273,831	- - - - - - - -	9976	13,273,739 – 13,273,831	-	8	95	92.38	-3.31	0.82	0.993676
7247	dm3.chr3L	13,275,342 – 13,275,435	- - - - - - - -	9977	13,275,342 – 13,275,435	-	10	102	83.00	-2.54	0.49	0.848442
7248	dm3.chr3L	13,321,120 – 13,321,218	- - - - - - - -	9978	13,321,120 – 13,321,218	+	7	120	74.65	-2.65	0.51	0.981696
7248	dm3.chr3L	13,321,120 – 13,321,218	- - - - - - - -	9979	13,321,120 – 13,321,218	-	7	120	74.65	-2.66	0.54	0.988032
7249	dm3.chr3L	13,324,315 – 13,324,410	- - - - - - - -	9980	13,324,315 – 13,324,410	-	6	98	80.00	-1.82	0.58	0.751683
7250	dm3.chr3L	13,325,775 – 13,325,868	- - - - - - - -	9981	13,325,775 – 13,325,868	+	8	115	70.58	-1.84	0.43	0.841620
7250	dm3.chr3L	13,325,775 – 13,325,868	- - - - - - - -	9982	13,325,775 – 13,325,868	-	8	115	70.58	-1.63	0.43	0.700566
7251	dm3.chr3L	13,335,314 – 13,335,407	- - - - - - - -	9983	13,335,314 – 13,335,407	-	6	112	66.52	-1.01	0.53	0.840327
7252	dm3.chr3L	13,353,067 – 13,353,117	- - - - - - - -	9984	13,353,067 – 13,353,117	+	8	50	95.93	-1.58	1.00	0.944087
7252	dm3.chr3L	13,353,067 – 13,353,117	- - - - - - - -	9985	13,353,067 – 13,353,117	-	8	50	95.93	-1.37	0.94	0.725175
7253	dm3.chr3L	13,358,976 – 13,359,042	- - - - - - - -	9986	13,358,976 – 13,359,042	+	6	76	67.35	-2.64	0.39	0.989556
7254	dm3.chr3L	13,361,459 – 13,361,551	- - - - - - - -	9987	13,361,459 – 13,361,551	+	3	93	86.74	-2.41	0.76	0.911607
7255	dm3.chr3L	13,364,672 – 13,364,774	- - - - - - - -	9988	13,364,672 – 13,364,774	-	6	103	75.62	-1.79	0.47	0.713129
7256	dm3.chr3L	13,370,882 – 13,370,972	- - - - - - - -	9989	13,370,882 – 13,370,972	+	10	101	66.00	-1.97	0.32	0.912227
7256	dm3.chr3L	13,370,882 – 13,370,972	- - - - - - - -	9990	13,370,882 – 13,370,972	-	10	101	66.00	-2.07	0.28	0.850554
7257	dm3.chr3L	13,391,223 – 13,391,318	- - - intron="intron;ID=intron_CG32120:2_CG32120:3;Name=sens-in;Parent=FBtr0075862;parent_type=mRNA" - - - -	9991	13,391,223 – 13,391,318	-	5	95	77.27	-2.40	0.59	0.973481
7258	dm3.chr3L	13,426,142 – 13,426,229	FBnoncoding="tRNA;ID=FBtr0075847;Name=tRNA:V4:70BCb-RA;Parent=FBgn0012010;Dbxref=FlyBase_Annotation_IDs:CR32124-RA;score_text=Weakly" tRNAscann="Val_chr3L_trna27" - intron="intron;ID=intron_FBgn0036360:3_FBgn0036360:2;Name=CG10713-in;Parent=FBtr0075855;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;BABH01006915.1/5428-5500\|8.3e-23" - - -	9992	13,426,142 – 13,426,229	+	13	97	85.80	-1.92	0.85	0.966780
7258	dm3.chr3L	13,426,142 – 13,426,229		9993	13,426,142 – 13,426,229	-	13	97	85.80	-2.04	0.94	0.988153
7259	dm3.chr3L	13,426,740 – 13,426,839	FBnoncoding="tRNA;ID=FBtr0075856;Name=tRNA:V4:70BCa-RA;Parent=FBgn0012009;Dbxref=FlyBase_Annotation_IDs:CR32122-RA;score_text=Weakly" tRNAscann="Val_chr3L_trna37" - intron="intron;ID=intron_FBgn0036360:3_FBgn0036360:2;Name=CG10713-in;Parent=FBtr0075855;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;BABH01006915.1/5428-5500\|9.7e-23" - - -	9994	13,426,740 – 13,426,839	+	13	99	82.04	-1.32	0.87	0.935850
7259	dm3.chr3L	13,426,740 – 13,426,839		9995	13,426,740 – 13,426,839	-	13	99	82.04	-0.86	0.82	0.678932
7260	dm3.chr3L	13,450,801 – 13,450,869	- - - - - - - -	9996	13,450,801 – 13,450,869	-	7	68	72.77	-1.74	0.47	0.837650
7261	dm3.chr3L	13,451,209 – 13,451,324	- - - - - - - -	9997	13,451,209 – 13,451,324	+	5	121	78.58	-1.67	0.56	0.538312
7262	dm3.chr3L	13,452,942 – 13,453,010	- - - - - - - -	9998	13,452,942 – 13,453,010	-	5	68	90.69	-1.43	0.88	0.650477
7263	dm3.chr3L	13,465,376 – 13,465,429	- - - intron="intron;ID=intron_CG10089:1_CG10089:2;Name=CG10089-in;Parent=FBtr0075820,FBtr0075822;parent_type=mRNA" - - - -	9999	13,465,376 – 13,465,429	+	5	53	87.55	-1.67	0.82	0.752335
7264	dm3.chr3L	13,466,326 – 13,466,424	- - - intron="intron;ID=intron_CG10089:1_CG10089:2;Name=CG10089-in;Parent=FBtr0075820,FBtr0075822;parent_type=mRNA" - - - -	10000	13,466,326 – 13,466,424	-	6	111	77.07	-1.47	0.60	0.635858
7265	dm3.chr3L	13,481,683 – 13,481,746	- - - intron="intron;ID=intron_CG10741:2_CG10741:3;Name=CG10741-in;Parent=FBtr0075810;parent_type=mRNA" - - - -	10001	13,481,683 – 13,481,746	+	8	82	75.56	-1.19	0.87	0.940330
7266	dm3.chr3L	13,514,871 – 13,514,986	- - - - - - - -	10002	13,514,871 – 13,514,986	-	5	115	87.24	-1.52	0.83	0.704498
7267	dm3.chr3L	13,534,855 – 13,534,969	- - CDS="CDS;ID=CDS_FBgn0036379:8_454;Name=bru-3-cds;Parent=FBtr0075815,FBtr0303515,FBtr0303517,FBtr0075816,FBtr0303514,FBtr0303516,FBtr0303524;parent_type=mRNA" - - - - -	10003	13,534,855 – 13,534,969	-	12	117	85.45	-1.79	0.70	0.801419
7268	dm3.chr3L	13,537,198 – 13,537,300	- - - intron="intron;ID=intron_FBgn0036379:11_FBgn0036379:10;Name=bru-3-in;Parent=FBtr0075815,FBtr0303515,FBtr0303520,FBtr0303517,FBtr0075816,FBtr0303522,FBtr0303514,FBtr0303523,FBtr0303519,FBtr0303516,FBtr0303518,FBtr0303521,FBtr0303524;parent_type=mRNA" - - - -	10004	13,537,198 – 13,537,300	+	8	111	85.08	-2.48	0.61	0.900988
7268	dm3.chr3L	13,537,198 – 13,537,300		10005	13,537,198 – 13,537,300	-	8	111	85.08	-2.10	0.57	0.548545
7269	dm3.chr3L	13,548,191 – 13,548,317	- - - intron="intron;ID=intron_FBgn0036379:11_FBgn0036379:10;Name=bru-3-in;Parent=FBtr0075815,FBtr0303515,FBtr0303520,FBtr0303517,FBtr0075816,FBtr0303522,FBtr0303514,FBtr0303523,FBtr0303519,FBtr0303516,FBtr0303518,FBtr0303521,FBtr0303524;parent_type=mRNA" - - - -	10006	13,548,191 – 13,548,317	+	12	135	86.43	-1.46	0.72	0.514269
7270	dm3.chr3L	13,563,106 – 13,563,203	- - - intron="intron;ID=intron_FBgn0036379:11_FBgn0036379:10;Name=bru-3-in;Parent=FBtr0075815,FBtr0303515,FBtr0303520,FBtr0303517,FBtr0075816,FBtr0303522,FBtr0303514,FBtr0303523,FBtr0303519,FBtr0303516,FBtr0303518,FBtr0303521,FBtr0303524;parent_type=mRNA" - - - -	10007	13,563,106 – 13,563,203	+	11	111	79.21	-1.37	0.61	0.700800
7271	dm3.chr3L	13,568,265 – 13,568,395	- - - intron="intron;ID=intron_FBgn0036379:11_FBgn0036379:10;Name=bru-3-in;Parent=FBtr0075815,FBtr0303515,FBtr0303520,FBtr0303517,FBtr0075816,FBtr0303522,FBtr0303514,FBtr0303523,FBtr0303519,FBtr0303516,FBtr0303518,FBtr0303521,FBtr0303524;parent_type=mRNA" - - - -	10008	13,568,265 – 13,568,395	-	4	139	48.27	-1.60	0.29	0.839614
7272	dm3.chr3L	13,577,612 – 13,577,704	- - - intron="intron;ID=intron_FBgn0036379:12_FBgn0036379:11;Name=bru-3-in;Parent=FBtr0075815,FBtr0303515,FBtr0303520,FBtr0303514,FBtr0303519,FBtr0303516,FBtr0303518;parent_type=mRNA" - - - -	10009	13,577,612 – 13,577,704	+	8	106	79.55	-2.12	0.43	0.516443
7273	dm3.chr3L	13,578,082 – 13,578,180	- - - intron="intron;ID=intron_FBgn0036379:12_FBgn0036379:11;Name=bru-3-in;Parent=FBtr0075815,FBtr0303515,FBtr0303520,FBtr0303514,FBtr0303519,FBtr0303516,FBtr0303518;parent_type=mRNA" - - - -	10010	13,578,082 – 13,578,180	+	9	102	75.48	-1.31	0.58	0.820018
7274	dm3.chr3L	13,578,534 – 13,578,586	- - - intron="intron;ID=intron_FBgn0036379:12_FBgn0036379:11;Name=bru-3-in;Parent=FBtr0075815,FBtr0303515,FBtr0303520,FBtr0303514,FBtr0303519,FBtr0303516,FBtr0303518;parent_type=mRNA" - - - -	10011	13,578,534 – 13,578,586	-	5	52	98.46	-0.75	1.02	0.617772
7275	dm3.chr3L	13,582,591 – 13,582,683	- - - intron="intron;ID=intron_FBgn0036379:12_FBgn0036379:11;Name=bru-3-in;Parent=FBtr0075815,FBtr0303515,FBtr0303520,FBtr0303514,FBtr0303519,FBtr0303516,FBtr0303518;parent_type=mRNA" - - - -	10012	13,582,591 – 13,582,683	-	6	100	78.70	-1.38	0.71	0.757305
7276	dm3.chr3L	13,591,344 – 13,591,449	- - - intron="intron;ID=intron_FBgn0036379:12_FBgn0036379:11;Name=bru-3-in;Parent=FBtr0075815,FBtr0303515,FBtr0303520,FBtr0303514,FBtr0303519,FBtr0303516,FBtr0303518;parent_type=mRNA" - - - -	10013	13,591,344 – 13,591,449	+	4	105	83.96	-1.80	0.83	0.871481
7276	dm3.chr3L	13,591,344 – 13,591,449		10014	13,591,344 – 13,591,449	-	4	105	83.96	-1.04	0.92	0.683303
7277	dm3.chr3L	13,605,942 – 13,606,032	- - - intron="intron;ID=intron_FBgn0036379:15_FBgn0036379:13;Name=bru-3-in;Parent=FBtr0303521;parent_type=mRNA" - - - -	10015	13,605,942 – 13,606,032	+	12	106	82.06	-1.56	0.62	0.525503
7278	dm3.chr3L	13,607,178 – 13,607,295	- - - intron="intron;ID=intron_FBgn0036379:15_FBgn0036379:13;Name=bru-3-in;Parent=FBtr0303521;parent_type=mRNA" - - - -	10016	13,607,178 – 13,607,295	-	11	136	72.12	-1.82	0.58	0.986105
7279	dm3.chr3L	13,607,950 – 13,608,045	- - - intron="intron;ID=intron_FBgn0036379:15_FBgn0036379:13;Name=bru-3-in;Parent=FBtr0303521;parent_type=mRNA" - - - -	10017	13,607,950 – 13,608,045	+	7	98	75.52	-1.98	0.43	0.782150
7279	dm3.chr3L	13,607,950 – 13,608,045		10018	13,607,950 – 13,608,045	-	7	98	75.52	-2.31	0.46	0.953251
7280	dm3.chr3L	13,610,688 – 13,610,781	- - - intron="intron;ID=intron_FBgn0036379:15_FBgn0036379:13;Name=bru-3-in;Parent=FBtr0303521;parent_type=mRNA" - - - -	10019	13,610,688 – 13,610,781	-	10	99	76.77	-1.14	0.66	0.834707
7281	dm3.chr3L	13,627,078 – 13,627,192	- - - intron="intron;ID=intron_FBgn0036379:15_FBgn0036379:13;Name=bru-3-in;Parent=FBtr0303521;parent_type=mRNA" - - - -	10020	13,627,078 – 13,627,192	-	8	118	78.90	-2.55	0.61	0.991550
7282	dm3.chr3L	13,634,465 – 13,634,587	- - - intron="intron;ID=intron_FBgn0036379:16_FBgn0036379:15;Name=bru-3-in;Parent=FBtr0075815,FBtr0303514;parent_type=mRNA" - - - -	10021	13,634,465 – 13,634,555	-	6	92	84.90	-1.59	0.74	0.664187
7282	dm3.chr3L	13,634,465 – 13,634,587		10022	13,634,486 – 13,634,587	-	8	113	81.00	-1.93	0.75	0.952069
7283	dm3.chr3L	13,637,947 – 13,638,121	- - - intron="intron;ID=intron_FBgn0036379:16_FBgn0036379:15;Name=bru-3-in;Parent=FBtr0075815,FBtr0303514;parent_type=mRNA" - - - -	10023	13,637,947 – 13,638,050	-	3	103	80.94	-2.18	0.65	0.776313
7283	dm3.chr3L	13,637,947 – 13,638,121		10024	13,638,011 – 13,638,121	-	3	110	82.15	-1.85	0.72	0.721711
7284	dm3.chr3L	13,639,569 – 13,639,670	- - - intron="intron;ID=intron_FBgn0036379:16_FBgn0036379:15;Name=bru-3-in;Parent=FBtr0075815,FBtr0303514;parent_type=mRNA" - - - -	10025	13,639,569 – 13,639,670	+	12	111	77.28	-1.11	0.61	0.672254
7285	dm3.chr3L	13,651,208 – 13,651,303	- - - intron="intron;ID=intron_FBgn0036379:17_FBgn0036379:16;Name=bru-3-in;Parent=FBtr0075815,FBtr0303514;parent_type=mRNA" - - - -	10026	13,651,208 – 13,651,303	+	7	105	87.51	-1.92	0.68	0.557369
7286	dm3.chr3L	13,653,286 – 13,653,396	- - - intron="intron;ID=intron_FBgn0036379:17_FBgn0036379:16;Name=bru-3-in;Parent=FBtr0075815,FBtr0303514;parent_type=mRNA" - - - -	10027	13,653,286 – 13,653,396	-	5	114	89.13	-1.13	0.97	0.828934
7287	dm3.chr3L	13,659,218 – 13,659,323	- - - intron="intron;ID=intron_FBgn0036379:18_FBgn0036379:17;Name=bru-3-in;Parent=FBtr0075815,FBtr0303515,FBtr0303520,FBtr0303517,FBtr0075816,FBtr0303522,FBtr0303514,FBtr0303523,FBtr0303519,FBtr0303516,FBtr0303518,FBtr0303521,FBtr0303524;parent_type=mRNA" - - - -	10028	13,659,218 – 13,659,323	+	9	108	77.10	-2.00	0.45	0.787400
7288	dm3.chr3L	13,667,261 – 13,667,374	- - - - - - - -	10029	13,667,261 – 13,667,351	+	9	93	75.52	-2.59	0.42	0.979100
				10030	13,667,261 – 13,667,351	-	9	93	75.52	-2.52	0.56	0.996428
				10031	13,667,279 – 13,667,374	+	10	103	68.43	-1.46	0.35	0.698409
				10032	13,667,279 – 13,667,374	-	10	103	68.43	-2.87	0.39	0.998743
7289	dm3.chr3L	13,668,913 – 13,669,009	- - - - - - - -	10033	13,668,913 – 13,669,009	-	12	114	69.51	-0.67	0.62	0.888596
7290	dm3.chr3L	13,688,608 – 13,688,689	- - - - - - - -	10034	13,688,608 – 13,688,689	-	6	91	56.64	-1.81	0.26	0.808455
7291	dm3.chr3L	13,688,829 – 13,688,967	- - - - - - - -	10035	13,688,829 – 13,688,933	-	11	116	71.86	-1.71	0.48	0.939022
7291	dm3.chr3L	13,688,829 – 13,688,967	- - - - - - - -	10036	13,688,860 – 13,688,967	-	12	119	77.25	-1.26	0.60	0.683798
7292	dm3.chr3L	13,696,888 – 13,696,979	- - - - - - - -	10037	13,696,888 – 13,696,979	+	9	91	80.78	-1.56	0.80	0.936161
7293	dm3.chr3L	13,700,721 – 13,700,778	- - - - - - - -	10038	13,700,721 – 13,700,778	+	10	61	73.05	-2.31	0.31	0.778657
7294	dm3.chr3L	13,700,989 – 13,701,095	- - - - - - - -	10039	13,700,989 – 13,701,095	+	7	119	76.54	-1.73	0.54	0.637982
7295	dm3.chr3L	13,708,313 – 13,708,420	- - - - - - - -	10040	13,708,313 – 13,708,417	+	8	109	76.24	-1.60	0.64	0.953467
7295	dm3.chr3L	13,708,313 – 13,708,420	- - - - - - - -	10041	13,708,317 – 13,708,420	+	8	108	75.99	-0.56	0.70	0.527008
7296	dm3.chr3L	13,709,002 – 13,709,095	- - - - - - - -	10042	13,709,002 – 13,709,095	-	6	113	80.12	-1.65	0.74	0.861951
7297	dm3.chr3L	13,713,098 – 13,713,188	- - - - - - - -	10043	13,713,098 – 13,713,188	+	3	90	82.13	-2.12	0.88	0.973178
7298	dm3.chr3L	13,716,526 – 13,716,645	- - - - - - - -	10044	13,716,526 – 13,716,645	-	5	120	75.52	-2.10	0.39	0.525450
7299	dm3.chr3L	13,720,436 – 13,720,527	- - - - - - - -	10045	13,720,436 – 13,720,527	-	6	109	76.06	-1.29	0.62	0.563369
7300	dm3.chr3L	13,721,983 – 13,722,110	- - - - - - - -	10046	13,721,983 – 13,722,110	+	9	127	91.94	-2.02	0.78	0.745127
7300	dm3.chr3L	13,721,983 – 13,722,110	- - - - - - - -	10047	13,721,983 – 13,722,110	-	9	127	91.94	-2.23	0.72	0.704853
7301	dm3.chr3L	13,729,229 – 13,729,325	- - - - - - - -	10048	13,729,229 – 13,729,325	-	9	101	72.56	-1.22	0.56	0.807287
7302	dm3.chr3L	13,739,583 – 13,739,678	- - - - - - - -	10049	13,739,583 – 13,739,678	+	8	100	91.28	-1.64	0.91	0.879539
7302	dm3.chr3L	13,739,583 – 13,739,678	- - - - - - - -	10050	13,739,583 – 13,739,678	-	8	100	91.28	-1.85	0.89	0.909329
7303	dm3.chr3L	13,741,938 – 13,742,049	- - - - - - - -	10051	13,741,938 – 13,742,049	-	12	120	88.47	-1.55	0.78	0.643010
7304	dm3.chr3L	13,742,192 – 13,742,303	- - - - - - - -	10052	13,742,192 – 13,742,294	+	10	113	80.36	-1.35	0.71	0.782750
7304	dm3.chr3L	13,742,192 – 13,742,303	- - - - - - - -	10053	13,742,202 – 13,742,303	+	10	112	75.52	-1.33	0.57	0.741893
7305	dm3.chr3L	13,751,532 – 13,751,624	- - - - - - - -	10054	13,751,532 – 13,751,624	+	12	114	85.12	-2.15	0.55	0.516234
7306	dm3.chr3L	13,754,461 – 13,754,560	- - - - - - - -	10055	13,754,461 – 13,754,560	-	12	120	86.16	-3.22	0.58	0.980798
7307	dm3.chr3L	13,762,220 – 13,762,460	- - - - - - - -	10056	13,762,220 – 13,762,340	-	5	120	98.00	-1.31	0.96	0.693896
7307	dm3.chr3L	13,762,220 – 13,762,460	- - - - - - - -	10057	13,762,340 – 13,762,460	+	5	120	97.99	-1.73	0.95	0.866127
7308	dm3.chr3L	13,769,944 – 13,770,042	- - - - - - - -	10058	13,769,944 – 13,770,042	-	6	107	69.30	-2.12	0.45	0.980865
7309	dm3.chr3L	13,773,092 – 13,773,207	- - - intron="intron;ID=intron_FBgn0085272:2_FBgn0085272:1;Name=CG34243-in;Parent=FBtr0112437;parent_type=mRNA" - - - -	10059	13,773,092 – 13,773,207	+	6	116	80.35	-2.45	0.60	0.972428
7309	dm3.chr3L	13,773,092 – 13,773,207		10060	13,773,092 – 13,773,207	-	6	116	80.35	-1.57	0.59	0.555433
7310	dm3.chr3L	13,781,265 – 13,781,316	- - - - - - - -	10061	13,781,265 – 13,781,316	-	3	51	97.39	-1.90	1.00	0.966891
7311	dm3.chr3L	13,792,997 – 13,793,065	- - - - - - - -	10062	13,792,997 – 13,793,065	+	7	72	75.40	-4.92	0.98	0.997431
7311	dm3.chr3L	13,792,997 – 13,793,065	- - - - - - - -	10063	13,792,997 – 13,793,065	-	7	72	75.40	-2.97	0.98	0.997915
7312	dm3.chr3L	13,798,129 – 13,798,194	- - - - - - - -	10064	13,798,129 – 13,798,194	+	4	65	52.56	-1.08	0.40	0.893183
7312	dm3.chr3L	13,798,129 – 13,798,194	- - - - - - - -	10065	13,798,129 – 13,798,194	-	4	65	52.56	-0.95	0.64	0.994847
7313	dm3.chr3L	13,811,414 – 13,811,472	- - - - - - - -	10066	13,811,414 – 13,811,472	+	4	58	62.64	-0.59	0.57	0.706354
7314	dm3.chr3L	13,815,966 – 13,816,062	- - - - - - - -	10067	13,815,966 – 13,816,062	-	6	97	79.79	-1.66	0.61	0.743877
7315	dm3.chr3L	13,816,211 – 13,816,263	- - - - - - - -	10068	13,816,211 – 13,816,263	-	5	52	89.79	-2.41	0.68	0.739274
7316	dm3.chr3L	13,816,353 – 13,816,408	- - - - - - - -	10069	13,816,353 – 13,816,408	+	5	55	98.91	-2.23	0.96	0.963339
7317	dm3.chr3L	13,817,275 – 13,817,403	- - - - - - - -	10070	13,817,275 – 13,817,391	+	5	120	94.39	-2.03	0.87	0.859138
				10071	13,817,287 – 13,817,403	+	5	120	94.73	-1.40	0.90	0.567379
				10072	13,817,287 – 13,817,403	-	5	120	94.73	-1.90	0.92	0.907250
7318	dm3.chr3L	13,819,193 – 13,819,254	- - - - - - - -	10073	13,819,193 – 13,819,254	+	5	62	95.77	-1.40	0.92	0.627768
7319	dm3.chr3L	13,828,275 – 13,828,370	- - - - - - - -	10074	13,828,275 – 13,828,370	-	6	108	78.32	-1.04	0.79	0.709099
7320	dm3.chr3L	13,829,576 – 13,829,627	- - - - - - - -	10075	13,829,576 – 13,829,627	-	5	51	94.71	-1.66	0.85	0.545167
7321	dm3.chr3L	13,845,559 – 13,845,611	- - - - - - - -	10076	13,845,559 – 13,845,611	+	7	60	65.90	-1.75	0.39	0.914858
7321	dm3.chr3L	13,845,559 – 13,845,611	- - - - - - - -	10077	13,845,559 – 13,845,611	-	7	60	65.90	-1.69	0.37	0.845608
7322	dm3.chr3L	13,855,866 – 13,855,978	- - - intron="intron;ID=intron_CG8745:2_CG8745:3;Name=CG8745-in;Parent=FBtr0075801;parent_type=mRNA" - - - -	10078	13,855,866 – 13,855,978	-	5	113	90.55	-1.49	0.90	0.781041
7323	dm3.chr3L	13,879,265 – 13,879,416	- - CDS="CDS;ID=CDS_FBgn0085429:11_360;Name=CG34400-cds;Parent=FBtr0290126,FBtr0290127,FBtr0290128,FBtr0290129;parent_type=mRNA" - - - - -	10079	13,879,265 – 13,879,416	+	13	161	70.79	-1.82	0.34	0.837349
7323	dm3.chr3L	13,879,265 – 13,879,416		10080	13,879,265 – 13,879,416	-	13	161	70.79	-2.40	0.36	0.985509
7324	dm3.chr3L	13,884,540 – 13,884,631	- - CDS="CDS;ID=CDS_FBgn0085429:17_360;Name=CG34400-cds;Parent=FBtr0290126,FBtr0290127,FBtr0290128,FBtr0290129;parent_type=mRNA" - - - - -	10081	13,884,540 – 13,884,631	+	10	95	84.19	-1.61	0.65	0.570455
7325	dm3.chr3L	13,886,457 – 13,886,553	- - - intron="intron;ID=intron_FBgn0085429:18_FBgn0085429:17;Name=CG34400-in;Parent=FBtr0290126,FBtr0290127,FBtr0290128,FBtr0290129;parent_type=mRNA" - - - -	10082	13,886,457 – 13,886,553	-	4	100	61.47	-1.64	0.39	0.838155
7326	dm3.chr3L	13,886,576 – 13,886,700	- - - intron="intron;ID=intron_FBgn0085429:18_FBgn0085429:17;Name=CG34400-in;Parent=FBtr0290126,FBtr0290127,FBtr0290128,FBtr0290129;parent_type=mRNA" - - - -	10083	13,886,576 – 13,886,679	-	10	118	68.46	-1.62	0.54	0.990793
7326	dm3.chr3L	13,886,576 – 13,886,700		10084	13,886,608 – 13,886,700	+	9	116	71.57	-0.96	0.53	0.664872
7327	dm3.chr3L	13,896,025 – 13,896,091	- - - - - - - -	10085	13,896,025 – 13,896,091	+	7	67	81.47	-2.51	0.73	0.992428
7328	dm3.chr3L	13,899,597 – 13,899,678	- - - - - - - -	10086	13,899,597 – 13,899,678	-	9	95	70.25	-1.77	0.41	0.807648
7329	dm3.chr3L	13,925,134 – 13,925,224	- - CDS="CDS;ID=CDS_CG9206:4_282;Name=Gl-cds;Parent=FBtr0075756;parent_type=mRNA" - - - - -	10087	13,925,134 – 13,925,224	-	13	90	69.63	-1.69	0.30	0.701604
7330	dm3.chr3L	13,932,605 – 13,932,730	- - - intron="intron;ID=intron_CG32137:1_CG32137:2;Name=CG32137-in;Parent=FBtr0075758;parent_type=mRNA" - - - -	10088	13,932,605 – 13,932,697	+	9	103	71.24	-2.17	0.62	0.997808
				10089	13,932,605 – 13,932,697	-	9	103	71.24	-2.36	0.48	0.994199
				10090	13,932,636 – 13,932,730	+	8	94	83.45	-2.49	0.68	0.979254
				10091	13,932,636 – 13,932,730	-	8	94	83.45	-2.48	0.54	0.896278
7331	dm3.chr3L	13,957,714 – 13,957,765	- - - - - - - -	10092	13,957,714 – 13,957,765	-	6	53	76.39	-1.64	0.86	0.980503
7332	dm3.chr3L	13,975,088 – 13,975,239	- - CDS="CDS;ID=CDS_CG17364:5_306;Name=CG17364-cds;Parent=FBtr0075788;parent_type=mRNA" - - - - -	10093	13,975,088 – 13,975,201	-	9	117	73.29	-2.05	0.54	0.985802
				10094	13,975,128 – 13,975,239	+	5	114	96.60	-2.40	0.93	0.970607
				10095	13,975,128 – 13,975,239	-	5	114	96.60	-2.30	0.94	0.968221
7333	dm3.chr3L	13,995,198 – 13,995,270	- - - - - - - -	10096	13,995,198 – 13,995,270	+	6	72	77.96	-2.55	0.51	0.971907
7333	dm3.chr3L	13,995,198 – 13,995,270	- - - - - - - -	10097	13,995,198 – 13,995,270	-	6	72	77.96	-1.70	0.72	0.953996
7334	dm3.chr3L	14,005,798 – 14,005,889	- - CDS="CDS;ID=CDS_CG9007:6_292;Name=CG9007-cds;Parent=FBtr0075768;parent_type=mRNA" - - - - -	10098	14,005,798 – 14,005,889	+	10	99	75.07	-1.73	0.46	0.821072
7335	dm3.chr3L	14,008,477 – 14,008,582	- - CDS="CDS;ID=CDS_CG9007:6_292;Name=CG9007-cds;Parent=FBtr0075768;parent_type=mRNA" - - - - -	10099	14,008,477 – 14,008,572	-	9	98	56.76	-2.76	0.26	0.997714
7335	dm3.chr3L	14,008,477 – 14,008,582		10100	14,008,482 – 14,008,582	-	9	103	58.04	-1.61	0.28	0.881602
7336	dm3.chr3L	14,021,223 – 14,021,325	- - CDS="CDS;ID=CDS_CG32133:2_408;Name=ptip-cds;Parent=FBtr0075784;parent_type=mRNA" - - - - -	10101	14,021,223 – 14,021,325	-	12	102	66.18	-1.73	0.23	0.515463
7337	dm3.chr3L	14,047,681 – 14,047,776	- - - intron="intron;ID=intron_FBgn0052138:1_FBgn0052138:2;Name=CG32138-in;Parent=FBtr0075775,FBtr0075776,FBtr0114573;parent_type=mRNA" - - - -	10102	14,047,681 – 14,047,776	-	4	101	75.59	-1.41	0.66	0.711830
7338	dm3.chr3L	14,079,286 – 14,079,391	- - - - - - - -	10103	14,079,286 – 14,079,391	+	10	119	84.84	-1.82	0.66	0.681223
7339	dm3.chr3L	14,116,251 – 14,116,341	- - - intron="intron;ID=intron_CG32139:3_CG32139:4;Name=Sox21b-in;Parent=FBtr0075747;parent_type=mRNA" - - - -	10104	14,116,251 – 14,116,341	-	10	90	80.57	-2.36	0.88	0.993616
7340	dm3.chr3L	14,125,307 – 14,125,438	- - - - - - - -	10105	14,125,307 – 14,125,408	+	6	120	73.66	-1.20	0.63	0.744860
7340	dm3.chr3L	14,125,307 – 14,125,438	- - - - - - - -	10106	14,125,347 – 14,125,438	-	5	93	70.60	-2.06	0.49	0.966746
7341	dm3.chr3L	14,139,328 – 14,139,452	- - - - - - - -	10107	14,139,328 – 14,139,425	+	11	120	73.64	-1.99	0.56	0.974527
7341	dm3.chr3L	14,139,328 – 14,139,452	- - - - - - - -	10108	14,139,352 – 14,139,452	+	12	120	76.51	-1.35	0.58	0.626467
7342	dm3.chr3L	14,157,885 – 14,158,022	- - - - - - - -	10109	14,157,885 – 14,157,990	-	5	108	71.10	-1.79	0.55	0.962710
7342	dm3.chr3L	14,157,885 – 14,158,022	- - - - - - - -	10110	14,157,924 – 14,158,022	-	5	100	75.15	-1.44	0.56	0.629564
7343	dm3.chr3L	14,161,724 – 14,161,886	- - - - - - - -	10111	14,161,724 – 14,161,814	-	9	95	66.78	-1.41	0.45	0.908562
7343	dm3.chr3L	14,161,724 – 14,161,886	- - - - - - - -	10112	14,161,814 – 14,161,886	+	11	74	71.87	-1.57	0.39	0.741018
7344	dm3.chr3L	14,166,364 – 14,166,501	- - - - - - - -	10113	14,166,364 – 14,166,475	+	10	116	79.18	-3.19	0.52	0.996488
				10114	14,166,364 – 14,166,475	-	10	116	79.18	-3.43	0.42	0.993358
				10115	14,166,404 – 14,166,501	-	9	101	79.34	-1.58	0.54	0.599149
7345	dm3.chr3L	14,170,856 – 14,170,958	- - - - - - - -	10116	14,170,856 – 14,170,951	-	12	119	75.38	-2.03	0.51	0.931536
7345	dm3.chr3L	14,170,856 – 14,170,958	- - - - - - - -	10117	14,170,863 – 14,170,958	-	10	110	85.39	-2.81	0.52	0.906162
7346	dm3.chr3L	14,176,195 – 14,176,290	- - - - - - - -	10118	14,176,195 – 14,176,290	+	3	95	100.00	-2.80	1.00	0.993745
7346	dm3.chr3L	14,176,195 – 14,176,290	- - - - - - - -	10119	14,176,195 – 14,176,290	-	3	95	100.00	-1.12	1.00	0.715995
7347	dm3.chr3L	14,197,537 – 14,197,638	- - - - - - - -	10120	14,197,537 – 14,197,638	+	7	119	71.67	-1.56	0.68	0.980774
7347	dm3.chr3L	14,197,537 – 14,197,638	- - - - - - - -	10121	14,197,537 – 14,197,638	-	7	119	71.67	-1.23	0.53	0.725765
7348	dm3.chr3L	14,200,698 – 14,200,802	- - - intron="intron;ID=intron_CG33991:27_CG33991:5;Name=nuf-in;Parent=FBtr0100042;parent_type=mRNA" - - - -	10122	14,200,698 – 14,200,802	-	11	116	69.71	-1.36	0.39	0.608406
7349	dm3.chr3L	14,202,136 – 14,202,238	- - - intron="intron;ID=intron_CG33991:27_CG33991:5;Name=nuf-in;Parent=FBtr0100042;parent_type=mRNA" - - - -	10123	14,202,136 – 14,202,238	-	6	102	80.17	-1.86	0.55	0.500000
7350	dm3.chr3L	14,216,608 – 14,216,724	- - - intron="intron;ID=intron_CG33991:40_CG33991:35;Name=nuf-in;Parent=FBtr0100044;parent_type=mRNA" - - - -	10124	14,216,608 – 14,216,724	+	6	117	86.38	-1.74	0.70	0.539693
7351	dm3.chr3L	14,217,658 – 14,217,748	- - - intron="intron;ID=intron_CG33991:40_CG33991:35;Name=nuf-in;Parent=FBtr0100044;parent_type=mRNA" - - - -	10125	14,217,658 – 14,217,748	+	11	113	79.89	-2.78	0.59	0.989493
7352	dm3.chr3L	14,226,624 – 14,226,732	- - - intron="intron;ID=intron_CG7924:1_CG7924:2;Name=CG7924-in;Parent=FBtr0075740;parent_type=mRNA" - - - -	10126	14,226,624 – 14,226,732	+	12	116	60.66	-0.28	0.50	0.822601
7353	dm3.chr3L	14,226,993 – 14,227,092	- - CDS="CDS;ID=CDS_CG7924:2_311;Name=CG7924-cds;Parent=FBtr0075740;parent_type=mRNA" - - - - -	10127	14,226,993 – 14,227,089	-	14	120	63.85	-2.23	0.22	0.792126
7353	dm3.chr3L	14,226,993 – 14,227,092		10128	14,226,993 – 14,227,092	-	14	118	62.04	-1.83	0.20	0.546749
7354	dm3.chr3L	14,246,843 – 14,246,915	- - - - - - - -	10129	14,246,843 – 14,246,915	+	6	72	84.63	-1.69	0.83	0.914033
7354	dm3.chr3L	14,246,843 – 14,246,915	- - - - - - - -	10130	14,246,843 – 14,246,915	-	6	72	84.63	-1.86	0.78	0.912583
7355	dm3.chr3L	14,247,107 – 14,247,200	- - - - - - - -	10131	14,247,107 – 14,247,200	-	6	94	88.43	-1.86	0.70	0.515944
7356	dm3.chr3L	14,250,240 – 14,250,335	- - - - - - - -	10132	14,250,240 – 14,250,335	+	10	113	84.29	-1.72	0.71	0.761653
7357	dm3.chr3L	14,256,268 – 14,256,328	- - - - - - - -	10133	14,256,268 – 14,256,328	+	8	75	68.10	-1.13	0.45	0.551457
7357	dm3.chr3L	14,256,268 – 14,256,328	- - - - - - - -	10134	14,256,268 – 14,256,328	-	8	75	68.10	-1.05	0.60	0.912100
7358	dm3.chr3L	14,258,515 – 14,258,605	- - - - - - - -	10135	14,258,515 – 14,258,605	+	7	95	78.92	-1.09	0.68	0.568227
7359	dm3.chr3L	14,267,909 – 14,268,037	- - - - - - - -	10136	14,267,909 – 14,268,037	+	6	146	83.61	-1.66	0.67	0.529558
7360	dm3.chr3L	14,271,183 – 14,271,282	- - - intron="intron;ID=intron_CG17697:6_CG17697:2;Name=fz-in;Parent=FBtr0075743;parent_type=mRNA" - - - -	10137	14,271,183 – 14,271,282	+	12	112	59.72	-0.93	0.36	0.786131
7361	dm3.chr3L	14,281,525 – 14,281,579	- - - intron="intron;ID=intron_CG17697:6_CG17697:2;Name=fz-in;Parent=FBtr0075743;parent_type=mRNA" - - - -	10138	14,281,525 – 14,281,579	+	6	61	83.55	-1.53	0.75	0.685938
7361	dm3.chr3L	14,281,525 – 14,281,579		10139	14,281,525 – 14,281,579	-	6	61	83.55	-1.50	0.82	0.830427
7362	dm3.chr3L	14,287,982 – 14,288,080	- - - intron="intron;ID=intron_CG17697:6_CG17697:2;Name=fz-in;Parent=FBtr0075743;parent_type=mRNA" - - - -	10140	14,287,982 – 14,288,080	+	8	113	68.48	-1.19	0.46	0.784667
7362	dm3.chr3L	14,287,982 – 14,288,080		10141	14,287,982 – 14,288,080	-	8	113	68.48	-1.96	0.45	0.981762
7363	dm3.chr3L	14,295,524 – 14,295,576	- - - intron="intron;ID=intron_CG17697:6_CG17697:2;Name=fz-in;Parent=FBtr0075743;parent_type=mRNA" - - - -	10142	14,295,524 – 14,295,576	+	7	65	69.15	-1.87	0.44	0.886372
7364	dm3.chr3L	14,311,748 – 14,311,810	- - - intron="intron;ID=intron_CG17697:4_CG17697:5;Name=fz-in;Parent=FBtr0075742;parent_type=mRNA" - - - -	10143	14,311,748 – 14,311,810	+	5	65	77.37	-1.47	0.58	0.557976
7365	dm3.chr3L	14,328,231 – 14,328,324	- - - - - - - -	10144	14,328,231 – 14,328,324	+	6	97	73.31	-1.03	0.53	0.550112
7366	dm3.chr3L	14,328,974 – 14,329,077	- - - - - - - -	10145	14,328,974 – 14,329,071	-	4	97	82.26	-1.50	0.73	0.500000
7366	dm3.chr3L	14,328,974 – 14,329,077	- - - - - - - -	10146	14,328,978 – 14,329,077	-	8	104	66.83	-1.17	0.56	0.947878
7367	dm3.chr3L	14,331,819 – 14,331,912	- - - - - - - -	10147	14,331,819 – 14,331,912	-	7	102	73.08	-1.87	0.37	0.543967
7368	dm3.chr3L	14,350,118 – 14,350,214	- - - - - - - -	10148	14,350,118 – 14,350,214	+	4	96	97.40	-2.08	0.97	0.963892
7368	dm3.chr3L	14,350,118 – 14,350,214	- - - - - - - -	10149	14,350,118 – 14,350,214	-	4	96	97.40	-2.04	1.00	0.977504
7369	dm3.chr3L	14,354,104 – 14,354,209	- - - - - - - -	10150	14,354,104 – 14,354,209	+	5	105	96.57	-1.97	0.82	0.540456
7370	dm3.chr3L	14,371,457 – 14,371,528	- - - - - - - -	10151	14,371,457 – 14,371,528	+	6	82	67.62	-1.18	0.51	0.823135
7371	dm3.chr3L	14,390,802 – 14,390,893	- - - - - - - -	10152	14,390,802 – 14,390,893	-	8	91	71.58	-1.27	0.43	0.663766
7372	dm3.chr3L	14,411,896 – 14,411,987	- - - intron="intron;ID=intron_FBgn0087007:7_FBgn0087007:6;Name=bbg-in;Parent=FBtr0273424,FBtr0273425,FBtr0273426;parent_type=mRNA" - - - -	10153	14,411,896 – 14,411,987	-	6	92	72.13	-2.61	0.70	0.998886
7373	dm3.chr3L	14,417,705 – 14,417,782	- - - intron="intron;ID=intron_FBgn0087007:7_FBgn0087007:6;Name=bbg-in;Parent=FBtr0273424,FBtr0273425,FBtr0273426;parent_type=mRNA" - - - -	10154	14,417,705 – 14,417,782	+	4	77	93.72	-2.28	0.75	0.629565
7374	dm3.chr3L	14,428,941 – 14,428,995	- - - - - - - -	10155	14,428,941 – 14,428,995	-	5	54	88.70	-1.75	0.93	0.947676
7375	dm3.chr3L	14,433,621 – 14,433,716	- - - intron="intron;ID=intron_FBgn0087007:12_FBgn0087007:11;Name=bbg-in;Parent=FBtr0273428;parent_type=mRNA" - - - -	10156	14,433,621 – 14,433,716	-	5	107	74.95	-1.57	0.58	0.726146
7376	dm3.chr3L	14,436,620 – 14,436,726	- - - intron="intron;ID=intron_FBgn0087007:12_FBgn0087007:11;Name=bbg-in;Parent=FBtr0273428;parent_type=mRNA" - - - -	10157	14,436,620 – 14,436,726	+	8	108	81.43	-1.34	0.75	0.805331
7377	dm3.chr3L	14,444,534 – 14,444,609	- - - - - - - -	10158	14,444,534 – 14,444,609	+	5	75	97.87	-3.64	0.96	0.997631
7378	dm3.chr3L	14,467,730 – 14,467,785	- - - - - - - -	10159	14,467,730 – 14,467,785	+	8	55	87.86	-0.70	0.94	0.512211
7379	dm3.chr3L	14,483,903 – 14,483,980	- - - - - - - -	10160	14,483,903 – 14,483,980	+	9	93	71.63	-0.89	0.56	0.592200
7380	dm3.chr3L	14,485,726 – 14,485,819	- - - - - - - -	10161	14,485,726 – 14,485,819	+	5	116	54.76	-1.77	0.33	0.922936
7381	dm3.chr3L	14,488,949 – 14,489,048	- - - - - - - -	10162	14,488,949 – 14,489,048	+	10	121	80.77	-1.27	0.74	0.647836
7381	dm3.chr3L	14,488,949 – 14,489,048	- - - - - - - -	10163	14,488,949 – 14,489,048	-	10	121	80.77	-1.71	0.62	0.664235
7382	dm3.chr3L	14,489,365 – 14,489,469	- - - - - - - -	10164	14,489,365 – 14,489,469	-	5	104	67.41	-1.61	0.35	0.521819
7383	dm3.chr3L	14,495,667 – 14,495,770	- - - - - - - -	10165	14,495,667 – 14,495,770	-	5	106	76.66	-1.52	0.60	0.705022
7384	dm3.chr3L	14,502,090 – 14,502,204	- - CDS="CDS;ID=CDS_FBgn0087007:14_363;Name=bbg-cds;Parent=FBtr0273427;parent_type=mRNA" - - - - -	10166	14,502,090 – 14,502,204	-	5	114	95.00	-1.54	0.89	0.624054
7385	dm3.chr3L	14,502,460 – 14,502,568	- - CDS="CDS;ID=CDS_FBgn0087007:14_363;Name=bbg-cds;Parent=FBtr0273427;parent_type=mRNA" - - - - -	10167	14,502,460 – 14,502,568	+	12	120	71.61	-1.22	0.44	0.631412
7386	dm3.chr3L	14,510,488 – 14,510,588	- - - - - - - -	10168	14,510,488 – 14,510,588	+	8	107	76.91	-1.86	0.66	0.959968
7387	dm3.chr3L	14,515,162 – 14,515,249	- - - - - - - -	10169	14,515,162 – 14,515,249	+	7	103	64.36	-1.57	0.35	0.857287
7388	dm3.chr3L	14,527,690 – 14,527,801	- - - - - - - -	10170	14,527,690 – 14,527,801	+	6	111	85.94	-1.24	0.81	0.568538
7389	dm3.chr3L	14,528,091 – 14,528,150	- - - - - - - -	10171	14,528,091 – 14,528,150	+	6	76	82.27	-2.20	0.76	0.955427
7390	dm3.chr3L	14,535,221 – 14,535,364	- - CDS="CDS;ID=CDS_CG9238:5_297;Name=CG9238-cds;Parent=FBtr0075723;parent_type=mRNA" - - - - -	10172	14,535,221 – 14,535,329	+	13	114	71.69	-1.06	0.45	0.666814
7390	dm3.chr3L	14,535,221 – 14,535,364		10173	14,535,248 – 14,535,364	+	13	120	75.58	-1.03	0.51	0.584300
7391	dm3.chr3L	14,540,074 – 14,540,174	- - - intron="intron;ID=intron_CG9238:2_CG9238:3;Name=CG9238-in;Parent=FBtr0075723,FBtr0075724;parent_type=mRNA" - - - -	10174	14,540,074 – 14,540,174	+	7	107	80.97	-2.44	0.58	0.935224
7391	dm3.chr3L	14,540,074 – 14,540,174		10175	14,540,074 – 14,540,174	-	7	107	80.97	-3.23	0.58	0.994377
7392	dm3.chr3L	14,541,391 – 14,541,482	- - - intron="intron;ID=intron_CG9238:6_CG9238:2;Name=CG9238-in;Parent=FBtr0075724;parent_type=mRNA" - - - -	10176	14,541,391 – 14,541,482	+	6	92	72.06	-1.40	0.56	0.764225
7393	dm3.chr3L	14,543,125 – 14,543,221	- - CDS="CDS;ID=CDS_CG9238:6_296;Name=CG9238-cds;Parent=FBtr0075724;parent_type=mRNA" - - - - -	10177	14,543,125 – 14,543,221	+	14	113	69.90	-1.43	0.51	0.961464
7393	dm3.chr3L	14,543,125 – 14,543,221		10178	14,543,125 – 14,543,221	-	14	113	69.90	-0.90	0.45	0.523737
7394	dm3.chr3L	14,546,187 – 14,546,317	- - - - - - - -	10179	14,546,187 – 14,546,287	+	6	117	65.41	-1.22	0.40	0.596792
				10180	14,546,187 – 14,546,287	-	6	117	65.41	-1.45	0.51	0.966627
				10181	14,546,213 – 14,546,317	-	6	120	74.21	-1.88	0.57	0.936850
7395	dm3.chr3L	14,547,542 – 14,547,661	- - - - - - - -	10182	14,547,542 – 14,547,661	+	5	120	76.47	-1.39	0.58	0.519204
7396	dm3.chr3L	14,554,299 – 14,554,423	- - - intron="intron;ID=intron_FBgn0054039:1_FBgn0054039:2;Name=CG34039-in;Parent=FBtr0301014;parent_type=mRNA" - - - -	10183	14,554,299 – 14,554,397	+	12	114	76.63	-2.06	0.52	0.957700
7396	dm3.chr3L	14,554,299 – 14,554,423		10184	14,554,320 – 14,554,423	+	11	116	75.62	-1.33	0.50	0.591863
7397	dm3.chr3L	14,561,778 – 14,561,829	- - - - - - - -	10185	14,561,778 – 14,561,829	+	11	60	88.88	-2.27	0.63	0.601527
7398	dm3.chr3L	14,563,286 – 14,563,413	- - - - - - - -	10186	14,563,286 – 14,563,384	+	9	98	70.09	-1.62	0.53	0.986767
				10187	14,563,286 – 14,563,384	-	9	98	70.09	-2.65	0.59	0.999653
				10188	14,563,312 – 14,563,413	+	9	101	82.30	-1.55	0.76	0.891208
				10189	14,563,312 – 14,563,413	-	9	101	82.30	-1.78	0.88	0.977354
7399	dm3.chr3L	14,568,198 – 14,568,320	- - - - - - - -	10190	14,568,198 – 14,568,304	-	12	120	84.16	-1.75	0.71	0.745473
7399	dm3.chr3L	14,568,198 – 14,568,320	- - - - - - - -	10191	14,568,225 – 14,568,320	-	10	100	80.93	-2.90	0.33	0.762615
7400	dm3.chr3L	14,572,042 – 14,572,134	- - - - - - - -	10192	14,572,042 – 14,572,134	-	11	106	87.83	-2.26	0.71	0.890438
7401	dm3.chr3L	14,577,133 – 14,577,246	- - - - - - - -	10193	14,577,133 – 14,577,237	+	14	113	72.64	-0.79	0.56	0.720054
7401	dm3.chr3L	14,577,133 – 14,577,246	- - - - - - - -	10194	14,577,143 – 14,577,246	+	11	116	69.38	-1.32	0.40	0.693578
7402	dm3.chr3L	14,596,641 – 14,596,750	- - - - - - - -	10195	14,596,641 – 14,596,750	+	6	117	84.45	-2.60	0.63	0.943444
7402	dm3.chr3L	14,596,641 – 14,596,750	- - - - - - - -	10196	14,596,641 – 14,596,750	-	6	117	84.45	-2.06	0.66	0.790334
7403	dm3.chr3L	14,600,169 – 14,600,282	- - - - - - - -	10197	14,600,169 – 14,600,282	+	4	115	67.32	-1.29	0.56	0.820035
7404	dm3.chr3L	14,611,020 – 14,611,113	- - - intron="intron;ID=intron_FBgn0003388:1_FBgn0003388:2;Name=shd-in;Parent=FBtr0075676;parent_type=mRNA" - - - -	10198	14,611,020 – 14,611,113	+	12	106	62.67	-0.95	0.49	0.969878
7405	dm3.chr3L	14,633,259 – 14,633,359	- - - intron="intron;ID=intron_CG32146:1_CG32146:2;Name=dlp-in;Parent=FBtr0075679,FBtr0075680;parent_type=mRNA" - - - -	10199	14,633,259 – 14,633,353	-	11	109	72.33	-1.36	0.50	0.812362
7405	dm3.chr3L	14,633,259 – 14,633,359		10200	14,633,269 – 14,633,359	-	11	108	66.67	-1.14	0.44	0.813001
7406	dm3.chr3L	14,636,744 – 14,636,825	- - - intron="intron;ID=intron_CG32146:1_CG32146:2;Name=dlp-in;Parent=FBtr0075679,FBtr0075680;parent_type=mRNA" - - - -	10201	14,636,744 – 14,636,825	+	12	90	74.62	-1.05	0.55	0.607030
7407	dm3.chr3L	14,636,855 – 14,636,956	- - - intron="intron;ID=intron_CG32146:1_CG32146:2;Name=dlp-in;Parent=FBtr0075679,FBtr0075680;parent_type=mRNA" - - - -	10202	14,636,855 – 14,636,956	+	6	110	77.59	-1.80	0.58	0.842484
7408	dm3.chr3L	14,639,422 – 14,639,483	- - - intron="intron;ID=intron_CG32146:1_CG32146:2;Name=dlp-in;Parent=FBtr0075679,FBtr0075680;parent_type=mRNA" - - - -	10203	14,639,422 – 14,639,483	+	5	69	88.89	-1.75	0.88	0.878672
7408	dm3.chr3L	14,639,422 – 14,639,483		10204	14,639,422 – 14,639,483	-	5	69	88.89	-0.87	0.95	0.583556
7409	dm3.chr3L	14,654,151 – 14,654,241	- - - intron="intron;ID=intron_CG32146:1_CG32146:2;Name=dlp-in;Parent=FBtr0075679,FBtr0075680;parent_type=mRNA" - - - -	10205	14,654,151 – 14,654,241	-	9	118	64.83	-2.03	0.38	0.950165
7410	dm3.chr3L	14,671,970 – 14,672,105	- - - - - - - -	10206	14,671,970 – 14,672,066	+	4	108	78.64	-2.49	0.66	0.974179
7410	dm3.chr3L	14,671,970 – 14,672,105	- - - - - - - -	10207	14,672,004 – 14,672,105	+	4	114	75.58	-2.06	0.59	0.902216
7411	dm3.chr3L	14,682,446 – 14,682,497	- - - - - - - -	10208	14,682,446 – 14,682,497	+	4	51	100.00	-0.89	1.00	0.549729
7411	dm3.chr3L	14,682,446 – 14,682,497	- - - - - - - -	10209	14,682,446 – 14,682,497	-	4	51	100.00	-0.88	1.00	0.541777
7412	dm3.chr3L	14,689,026 – 14,689,085	- - - - - - - -	10210	14,689,026 – 14,689,085	+	5	67	57.40	-0.93	0.60	0.981655
7413	dm3.chr3L	14,710,241 – 14,710,338	- - - intron="intron;ID=intron_FBgn0259175:3_FBgn0259175:4;Name=ome-in;Parent=FBtr0299650,FBtr0299651;parent_type=mRNA" - - - -	10211	14,710,241 – 14,710,338	+	10	111	68.25	-1.91	0.30	0.715876
7413	dm3.chr3L	14,710,241 – 14,710,338		10212	14,710,241 – 14,710,338	-	10	111	68.25	-1.81	0.32	0.735281
7414	dm3.chr3L	14,710,502 – 14,710,611	- - - intron="intron;ID=intron_FBgn0259175:3_FBgn0259175:4;Name=ome-in;Parent=FBtr0299650,FBtr0299651;parent_type=mRNA" - - - -	10213	14,710,502 – 14,710,611	+	5	109	93.77	-2.38	0.85	0.931941
7415	dm3.chr3L	14,714,149 – 14,714,211	- - - intron="intron;ID=intron_FBgn0259175:3_FBgn0259175:4;Name=ome-in;Parent=FBtr0299650,FBtr0299651;parent_type=mRNA" - - - -	10214	14,714,149 – 14,714,211	+	7	63	64.83	-1.23	0.60	0.992411
7416	dm3.chr3L	14,723,789 – 14,723,901	- - - intron="intron;ID=intron_FBgn0259175:3_FBgn0259175:4;Name=ome-in;Parent=FBtr0299650,FBtr0299651;parent_type=mRNA" - - - -	10215	14,723,789 – 14,723,901	-	7	112	71.73	-1.59	0.62	0.986230
7417	dm3.chr3L	14,743,443 – 14,743,535	- - - intron="intron;ID=intron_FBgn0260233:2_FBgn0260233:1;Name=CG42507-in;Parent=FBtr0300641,FBtr0300642;parent_type=mRNA" - - - -	10216	14,743,443 – 14,743,535	+	8	99	68.44	-3.47	0.23	0.985019
7417	dm3.chr3L	14,743,443 – 14,743,535		10217	14,743,443 – 14,743,535	-	8	99	68.44	-3.64	0.48	0.999853
7418	dm3.chr3L	14,750,891 – 14,750,981	- - - - - - - -	10218	14,750,891 – 14,750,981	-	5	91	98.01	-1.88	1.00	0.964807
7419	dm3.chr3L	14,751,474 – 14,751,585	- - - - - - - -	10219	14,751,474 – 14,751,585	+	5	111	69.61	-1.25	0.55	0.816346
7420	dm3.chr3L	14,752,065 – 14,752,158	- - - - - - - -	10220	14,752,065 – 14,752,158	-	5	94	95.61	-1.24	0.97	0.757765
7421	dm3.chr3L	14,776,313 – 14,776,493	- - - intron="intron;ID=intron_FBgn0036449:8_FBgn0036449:7;Name=bmm-in;Parent=FBtr0075699,FBtr0300190;parent_type=mRNA" - - - -	10221	14,776,313 – 14,776,493	+	4	188	76.75	-2.31	0.50	0.785052
7422	dm3.chr3L	14,777,469 – 14,777,563	- - - intron="intron;ID=intron_FBgn0036449:8_FBgn0036449:7;Name=bmm-in;Parent=FBtr0075699,FBtr0300190;parent_type=mRNA" - - - -	10222	14,777,469 – 14,777,563	+	6	112	75.58	-1.49	0.59	0.824811
7423	dm3.chr3L	14,792,796 – 14,792,888	- - - - - - - -	10223	14,792,796 – 14,792,888	+	9	103	68.48	-1.05	0.59	0.928787
7424	dm3.chr3L	14,797,851 – 14,797,941	- - - - - - - -	10224	14,797,851 – 14,797,941	-	6	91	84.34	-1.63	0.80	0.827438
7425	dm3.chr3L	14,804,134 – 14,804,226	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10225	14,804,134 – 14,804,226	-	8	96	81.32	-1.45	0.74	0.734932
7426	dm3.chr3L	14,809,637 – 14,809,723	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10226	14,809,637 – 14,809,723	+	8	94	83.99	-1.68	0.93	0.969493
7427	dm3.chr3L	14,811,872 – 14,811,992	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10227	14,811,872 – 14,811,992	-	7	120	87.79	-1.41	0.84	0.655926
7428	dm3.chr3L	14,813,924 – 14,814,035	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10228	14,813,924 – 14,814,035	+	8	120	75.67	-2.46	0.33	0.657387
7429	dm3.chr3L	14,816,644 – 14,816,744	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10229	14,816,644 – 14,816,744	+	6	101	97.74	-1.01	1.01	0.758181
7430	dm3.chr3L	14,817,298 – 14,817,376	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10230	14,817,298 – 14,817,376	-	5	78	91.53	-2.36	0.87	0.963742
7431	dm3.chr3L	14,817,541 – 14,817,696	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10231	14,817,541 – 14,817,645	+	7	109	75.81	-2.01	0.71	0.992701
				10232	14,817,541 – 14,817,645	-	7	109	75.81	-1.77	0.71	0.985097
				10233	14,817,576 – 14,817,668	+	6	97	94.66	-2.59	0.89	0.976571
				10234	14,817,576 – 14,817,668	-	6	97	94.66	-4.11	0.92	0.998595
				10235	14,817,605 – 14,817,696	+	8	104	92.58	-3.27	0.82	0.991925
				10236	14,817,605 – 14,817,696	-	8	104	92.58	-3.07	0.85	0.990809
7432	dm3.chr3L	14,826,407 – 14,826,502	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10237	14,826,407 – 14,826,502	+	7	111	69.96	-0.89	0.60	0.795623
7433	dm3.chr3L	14,826,521 – 14,826,617	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10238	14,826,521 – 14,826,617	+	5	96	94.38	-1.72	0.83	0.509437
7433	dm3.chr3L	14,826,521 – 14,826,617		10239	14,826,521 – 14,826,617	-	5	96	94.38	-2.04	0.95	0.963137
7434	dm3.chr3L	14,827,257 – 14,827,472	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10240	14,827,257 – 14,827,373	+	5	119	82.59	-2.24	0.60	0.836058
				10241	14,827,257 – 14,827,373	-	5	119	82.59	-2.11	0.60	0.757624
				10242	14,827,337 – 14,827,444	+	6	117	77.08	-2.26	0.42	0.708792
				10243	14,827,337 – 14,827,444	-	6	117	77.08	-2.02	0.46	0.659752
				10244	14,827,364 – 14,827,472	+	6	117	79.34	-2.88	0.63	0.994649
				10245	14,827,364 – 14,827,472	-	6	117	79.34	-2.49	0.57	0.966335
7435	dm3.chr3L	14,828,040 – 14,828,168	- - - intron="intron;ID=intron_FBgn0036454:2_FBgn0036454:3;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10246	14,828,040 – 14,828,168	+	7	149	72.77	-2.09	0.51	0.973694
7436	dm3.chr3L	14,833,760 – 14,833,858	- - - intron="intron;ID=intron_FBgn0036454:3_FBgn0036454:4;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10247	14,833,760 – 14,833,858	+	7	112	77.68	-1.70	0.69	0.951668
7437	dm3.chr3L	14,834,959 – 14,835,056	- - - intron="intron;ID=intron_FBgn0036454:3_FBgn0036454:4;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10248	14,834,959 – 14,835,056	+	8	105	85.32	-2.47	0.60	0.865738
7438	dm3.chr3L	14,835,835 – 14,835,930	- - - intron="intron;ID=intron_FBgn0036454:3_FBgn0036454:4;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10249	14,835,835 – 14,835,930	+	6	117	72.36	-0.78	0.74	0.657871
7439	dm3.chr3L	14,850,404 – 14,850,507	- - - intron="intron;ID=intron_FBgn0036454:3_FBgn0036454:4;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10250	14,850,404 – 14,850,507	+	10	115	64.68	-1.66	0.33	0.877988
7440	dm3.chr3L	14,851,679 – 14,851,749	- - - intron="intron;ID=intron_FBgn0036454:3_FBgn0036454:4;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10251	14,851,679 – 14,851,749	+	10	70	83.86	-1.06	0.77	0.524558
7441	dm3.chr3L	14,854,681 – 14,854,773	- - - intron="intron;ID=intron_FBgn0036454:3_FBgn0036454:4;Name=CG17839-in;Parent=FBtr0075695,FBtr0110825;parent_type=mRNA" - - - -	10252	14,854,681 – 14,854,773	-	5	92	71.78	-1.21	0.62	0.749641
7442	dm3.chr3L	14,863,858 – 14,863,982	- - CDS="CDS;ID=CDS_FBgn0036454:12_325;Name=CG17839-cds;Parent=FBtr0075695;parent_type=mRNA" - - - - -	10253	14,863,858 – 14,863,982	-	14	137	68.10	-0.47	0.51	0.693831
7443	dm3.chr3L	14,875,714 – 14,875,840	- - - - - - - -	10254	14,875,714 – 14,875,804	+	8	110	68.93	-1.62	0.45	0.864673
7443	dm3.chr3L	14,875,714 – 14,875,840	- - - - - - - -	10255	14,875,746 – 14,875,840	-	8	109	72.55	-1.84	0.44	0.813130
7444	dm3.chr3L	14,880,429 – 14,880,532	- - - - - - - -	10256	14,880,429 – 14,880,532	+	6	112	71.61	-1.19	0.65	0.741270
7445	dm3.chr3L	14,882,289 – 14,882,400	- - - - - - - -	10257	14,882,289 – 14,882,400	-	12	132	81.18	-2.20	0.57	0.886255
7446	dm3.chr3L	14,906,327 – 14,906,419	- - - intron="intron;ID=intron_FBgn0259099:1_FBgn0259099:3;Name=DCX-EMAP-in;Parent=FBtr0299509;parent_type=mRNA" - - - -	10258	14,906,327 – 14,906,419	+	8	103	74.51	-2.41	0.41	0.949488
7446	dm3.chr3L	14,906,327 – 14,906,419		10259	14,906,327 – 14,906,419	-	8	103	74.51	-1.65	0.43	0.612783
7447	dm3.chr3L	14,910,458 – 14,910,569	- - - intron="intron;ID=intron_FBgn0259099:1_FBgn0259099:3;Name=DCX-EMAP-in;Parent=FBtr0299509;parent_type=mRNA" - - - -	10260	14,910,458 – 14,910,569	-	10	119	84.21	-1.70	0.61	0.512061
7448	dm3.chr3L	14,910,699 – 14,910,792	- - - intron="intron;ID=intron_FBgn0259099:1_FBgn0259099:3;Name=DCX-EMAP-in;Parent=FBtr0299509;parent_type=mRNA" - - - -	10261	14,910,699 – 14,910,792	-	8	95	79.95	-1.16	0.79	0.841396
7449	dm3.chr3L	14,914,719 – 14,914,784	- - - intron="intron;ID=intron_FBgn0259099:1_FBgn0259099:3;Name=DCX-EMAP-in;Parent=FBtr0299509;parent_type=mRNA" - - - -	10262	14,914,719 – 14,914,784	+	5	65	96.92	-1.43	0.93	0.660422
7449	dm3.chr3L	14,914,719 – 14,914,784		10263	14,914,719 – 14,914,784	-	5	65	96.92	-1.59	0.91	0.679660
7450	dm3.chr3L	14,915,179 – 14,915,282	- - - intron="intron;ID=intron_FBgn0259099:2_FBgn0259099:3;Name=DCX-EMAP-in;Parent=FBtr0299510;parent_type=mRNA" - - - -	10264	14,915,179 – 14,915,282	-	10	116	72.61	-2.36	0.28	0.679616
7451	dm3.chr3L	14,918,679 – 14,918,735	- - - intron="intron;ID=intron_FBgn0259099:2_FBgn0259099:3;Name=DCX-EMAP-in;Parent=FBtr0299510;parent_type=mRNA" - - - -	10265	14,918,679 – 14,918,735	+	7	56	75.60	-1.36	0.59	0.833574
7451	dm3.chr3L	14,918,679 – 14,918,735		10266	14,918,679 – 14,918,735	-	7	56	75.60	-1.24	0.52	0.518404
7452	dm3.chr3L	14,933,872 – 14,933,992	- - CDS="CDS;ID=CDS_FBgn0259099:9_376;Name=DCX-EMAP-cds;Parent=FBtr0299510;parent_type=mRNA" - - - - -	10267	14,933,872 – 14,933,992	+	15	120	83.65	-1.88	0.60	0.821901
7453	dm3.chr3L	14,936,917 – 14,937,056	- - - - - - - -	10268	14,936,917 – 14,937,056	-	7	151	79.94	-2.15	0.63	0.945934
7454	dm3.chr3L	14,946,516 – 14,946,648	- - - - - - - -	10269	14,946,516 – 14,946,634	+	12	118	70.50	-2.34	0.23	0.666158
7454	dm3.chr3L	14,946,516 – 14,946,648	- - - - - - - -	10270	14,946,534 – 14,946,648	-	12	118	70.32	-1.79	0.32	0.666031
7455	dm3.chr3L	14,950,171 – 14,950,280	- - - - - - - -	10271	14,950,171 – 14,950,280	+	9	120	70.69	-3.27	0.36	0.997911
7456	dm3.chr3L	14,953,285 – 14,953,335	- - - - - - - -	10272	14,953,285 – 14,953,335	+	5	52	87.40	-2.88	0.78	0.988289
7456	dm3.chr3L	14,953,285 – 14,953,335	- - - - - - - -	10273	14,953,285 – 14,953,335	-	5	52	87.40	-3.14	0.70	0.987492
7457	dm3.chr3L	14,955,731 – 14,955,851	- - - - - - - -	10274	14,955,731 – 14,955,851	+	7	120	85.73	-1.88	0.78	0.887264
7458	dm3.chr3L	14,958,176 – 14,958,302	- - - - - - - -	10275	14,958,176 – 14,958,302	-	10	127	72.39	-2.28	0.34	0.929166
7459	dm3.chr3L	14,959,599 – 14,959,692	- - - - - - - -	10276	14,959,599 – 14,959,692	+	7	105	74.48	-1.10	0.55	0.517038
7460	dm3.chr3L	14,963,141 – 14,963,241	- - - - - - - -	10277	14,963,141 – 14,963,241	+	8	104	86.65	-1.83	0.79	0.850889
7461	dm3.chr3L	14,965,455 – 14,965,593	- - - - - - - -	10278	14,965,455 – 14,965,560	-	9	116	74.82	-1.60	0.49	0.633382
				10279	14,965,486 – 14,965,593	+	8	107	84.51	-2.47	0.73	0.975988
				10280	14,965,486 – 14,965,593	-	8	107	84.51	-2.01	0.70	0.867567
7462	dm3.chr3L	14,967,377 – 14,967,473	- - - - - - - -	10281	14,967,377 – 14,967,473	+	4	96	69.58	-1.74	0.48	0.821952
7463	dm3.chr3L	14,970,000 – 14,970,096	- - - - - - - -	10282	14,970,000 – 14,970,096	-	6	97	82.13	-0.86	0.91	0.731715
7464	dm3.chr3L	14,971,480 – 14,971,534	- - - - - - - -	10283	14,971,480 – 14,971,534	-	4	54	82.10	-0.36	1.04	0.690622
7465	dm3.chr3L	14,972,459 – 14,972,595	- - - - - - - -	10284	14,972,459 – 14,972,571	+	6	118	87.76	-2.31	0.70	0.863301
7465	dm3.chr3L	14,972,459 – 14,972,595	- - - - - - - -	10285	14,972,499 – 14,972,595	+	7	113	77.04	-0.99	0.69	0.526205
7466	dm3.chr3L	14,979,528 – 14,979,630	- - - intron="intron;ID=intron_FBgn0002778:1_FBgn0002778:3;Name=mnd-in;Parent=FBtr0075626;parent_type=mRNA" - - - -	10286	14,979,528 – 14,979,630	+	4	103	85.03	-2.05	0.67	0.631106
7467	dm3.chr3L	15,001,255 – 15,001,347	- - - intron="intron;ID=intron_CG5392:2_CG5392:3;Name=Reck-in;Parent=FBtr0075671;parent_type=mRNA" - - - -	10287	15,001,255 – 15,001,347	+	5	103	75.31	-1.66	0.57	0.770066
7468	dm3.chr3L	15,004,787 – 15,004,839	- - - - - - - -	10288	15,004,787 – 15,004,839	+	7	55	78.38	-0.87	0.81	0.759119
7469	dm3.chr3L	15,006,222 – 15,006,325	- - - intron="intron;ID=intron_CG5392:1_CG5392:2;Name=Reck-in;Parent=FBtr0075671;parent_type=mRNA" - - - -	10289	15,006,222 – 15,006,325	-	5	112	65.27	-1.36	0.55	0.948920
7470	dm3.chr3L	15,006,736 – 15,006,848	- - - intron="intron;ID=intron_CG5392:1_CG5392:2;Name=Reck-in;Parent=FBtr0075671;parent_type=mRNA" - - - -	10290	15,006,736 – 15,006,848	-	7	119	75.56	-1.57	0.48	0.561246
7471	dm3.chr3L	15,009,848 – 15,009,902	- - - intron="intron;ID=intron_FBgn0259235:2_FBgn0259235:1;Name=Sytbeta-in;Parent=FBtr0299848,FBtr0299849;parent_type=mRNA" - - - -	10291	15,009,848 – 15,009,902	-	6	61	62.37	-0.17	0.61	0.670780
7472	dm3.chr3L	15,017,755 – 15,017,852	- - - - - - - -	10292	15,017,755 – 15,017,852	-	4	109	71.26	-2.19	0.43	0.739114
7473	dm3.chr3L	15,017,876 – 15,017,942	- - - - - - - -	10293	15,017,876 – 15,017,942	+	6	66	78.00	-0.26	0.96	0.539526
7474	dm3.chr3L	15,020,615 – 15,020,708	- - - - - - - -	10294	15,020,615 – 15,020,708	+	10	94	77.26	-1.71	0.46	0.646366
7475	dm3.chr3L	15,026,566 – 15,026,651	- - - - - - - -	10295	15,026,566 – 15,026,651	+	9	103	70.62	-1.31	0.48	0.700381
7476	dm3.chr3L	15,033,755 – 15,033,920	- - - - - - - -	10296	15,033,755 – 15,033,847	+	10	108	68.61	-1.25	0.41	0.627355
				10297	15,033,791 – 15,033,885	+	10	108	69.54	-2.14	0.51	0.997030
				10298	15,033,791 – 15,033,885	-	10	108	69.54	-1.86	0.60	0.997354
				10299	15,033,816 – 15,033,920	+	10	116	71.87	-2.58	0.47	0.996868
				10300	15,033,816 – 15,033,920	-	10	116	71.87	-2.96	0.55	0.999555
7477	dm3.chr3L	15,036,800 – 15,036,898	- - CDS="CDS;ID=CDS_CG11551:1_325;Name=ind-cds;Parent=FBtr0075668;parent_type=mRNA" - - - - -	10301	15,036,800 – 15,036,898	+	12	117	63.73	-0.81	0.41	0.599249
7478	dm3.chr3L	15,055,437 – 15,055,544	- - - intron="intron;ID=intron_FBgn0259235:10_FBgn0259235:9;Name=Sytbeta-in;Parent=FBtr0299848;parent_type=mRNA" - - - -	10302	15,055,437 – 15,055,544	-	6	120	62.61	-2.15	0.27	0.842907
7479	dm3.chr3L	15,062,892 – 15,063,003	- - - intron="intron;ID=intron_FBgn0086690:4_FBgn0086690:3;Name=cp309-in;Parent=FBtr0099993,FBtr0305977,FBtr0305978,FBtr0305979;parent_type=mRNA" - - - -	10303	15,062,892 – 15,063,003	+	6	116	64.31	-0.21	0.59	0.507924
7480	dm3.chr3L	15,072,098 – 15,072,172	- - - - - - - -	10304	15,072,098 – 15,072,172	-	5	74	90.74	-1.66	0.87	0.788983
7481	dm3.chr3L	15,073,451 – 15,073,551	- - - - - - - -	10305	15,073,451 – 15,073,551	-	9	119	63.73	-1.85	0.29	0.715715
7482	dm3.chr3L	15,073,600 – 15,073,695	- - - - - - - -	10306	15,073,600 – 15,073,695	+	3	95	97.89	-1.21	1.00	0.805350
7483	dm3.chr3L	15,083,264 – 15,083,369	- - - - - - - -	10307	15,083,264 – 15,083,369	-	12	111	55.75	-2.16	0.36	0.998611
7484	dm3.chr3L	15,087,005 – 15,087,151	- - - intron="intron;ID=intron_FBgn0036476:2_FBgn0036476:1;Name=CG6945-in;Parent=FBtr0075657;parent_type=mRNA" - - - -	10308	15,087,005 – 15,087,151	+	8	168	77.83	-1.57	0.60	0.679008
7485	dm3.chr3L	15,087,588 – 15,087,689	- - - - - - - -	10309	15,087,588 – 15,087,689	-	9	103	64.08	-1.01	0.36	0.512125
7486	dm3.chr3L	15,096,093 – 15,096,193	- - - intron="intron;ID=intron_CG6854:1_CG6854:2;Name=CTPsyn-in;Parent=FBtr0075634;parent_type=mRNA" - - - -	10310	15,096,093 – 15,096,193	-	6	113	75.56	-1.63	0.49	0.568260
7487	dm3.chr3L	15,097,092 – 15,097,205	- - - intron="intron;ID=intron_CG6854:1_CG6854:2;Name=CTPsyn-in;Parent=FBtr0075634;parent_type=mRNA" - - - -	10311	15,097,092 – 15,097,205	+	5	113	85.04	-2.57	0.56	0.823984
7488	dm3.chr3L	15,102,287 – 15,102,388	- - - intron="intron;ID=intron_CG6854:6_CG6854:7;Name=CTPsyn-in;Parent=FBtr0075635;parent_type=mRNA" - - - -	10312	15,102,287 – 15,102,388	+	6	116	67.45	-1.52	0.56	0.975573
7489	dm3.chr3L	15,114,153 – 15,114,271	- - CDS="CDS;ID=CDS_FBgn0036481:4_447;Name=CG16959-cds;Parent=FBtr0303378;parent_type=mRNA" - - - - -	10313	15,114,153 – 15,114,271	-	14	120	76.41	-1.49	0.43	0.615657
7490	dm3.chr3L	15,117,470 – 15,117,634	- - - intron="intron;ID=intron_FBgn0036481:7_FBgn0036481:6;Name=CG16959-in;Parent=FBtr0075655,FBtr0303378;parent_type=mRNA" - - - -	10314	15,117,470 – 15,117,569	-	5	103	82.87	-1.97	0.76	0.906863
				10315	15,117,503 – 15,117,595	+	5	92	83.54	-1.94	0.70	0.770637
				10316	15,117,503 – 15,117,595	-	5	92	83.54	-2.19	0.61	0.707005
				10317	15,117,537 – 15,117,634	-	5	98	80.83	-1.63	0.76	0.842475
7491	dm3.chr3L	15,122,079 – 15,122,199	- - CDS="CDS;ID=CDS_FBgn0036482:2_447;Name=CG13457-cds;Parent=FBtr0075653;parent_type=mRNA" - - - - -	10318	15,122,079 – 15,122,199	+	4	120	80.69	-1.08	0.89	0.783155
7492	dm3.chr3L	15,125,697 – 15,125,779	- - CDS="CDS;ID=CDS_CG12316:8_285;Name=CG12316-cds;Parent=FBtr0075652;parent_type=mRNA" - - - - -	10319	15,125,697 – 15,125,779	+	5	85	78.12	-1.94	0.54	0.716847
7493	dm3.chr3L	15,127,642 – 15,127,785	FBnoncoding="snoRNA;ID=FBtr0091708;Name=snoRNA:MeU5-U42-RA;Parent=FBgn0065051;Alias=snoRNA:755-RA;Dbxref=FlyBase_Annotation_IDs:CR33716-RA,REFSEQ:NR_002487;score_text=Weakly" - - intron="intron;ID=intron_CG12316:4_CG12316:5;Name=CG12316-in;Parent=FBtr0075652,FBtr0075651;parent_type=mRNA" - "Noncode_2.0=n3504_u3132_AJ544002_snoRNA_Drosophila\|3.6e-57" "unique_Noncode_2.0=u3132_snoRNA_Drosophila\|3.2e-57" -	10320	15,127,642 – 15,127,785	+	11	145	76.11	-1.51	0.49	0.740389
7493	dm3.chr3L	15,127,642 – 15,127,785		10321	15,127,642 – 15,127,785	-	11	145	76.11	-1.81	0.64	0.984153
7494	dm3.chr3L	15,139,285 – 15,139,341	- - - - - - - -	10322	15,139,285 – 15,139,341	+	3	60	85.00	-1.56	0.89	0.857081
7494	dm3.chr3L	15,139,285 – 15,139,341	- - - - - - - -	10323	15,139,285 – 15,139,341	-	3	60	85.00	-2.35	0.88	0.980893
7495	dm3.chr3L	15,144,320 – 15,144,410	- - - intron="intron;ID=intron_CG6869:2_CG6869:3;Name=FucTA-in;Parent=FBtr0075641;parent_type=mRNA" - - - -	10324	15,144,320 – 15,144,410	+	3	115	80.29	-2.99	0.51	0.915409
7496	dm3.chr3L	15,164,136 – 15,164,228	- - - - - - - -	10325	15,164,136 – 15,164,228	+	8	92	62.96	-0.51	0.45	0.526811
7496	dm3.chr3L	15,164,136 – 15,164,228	- - - - - - - -	10326	15,164,136 – 15,164,228	+	8	92	62.96	-0.51	0.45	0.526811
7497	dm3.chr3L	15,173,587 – 15,173,680	- - - - - - - -	10327	15,173,587 – 15,173,680	+	9	107	69.20	-1.77	0.33	0.580144
7498	dm3.chr3L	15,176,129 – 15,176,248	- - - - - - - -	10328	15,176,129 – 15,176,248	+	8	120	69.76	-2.10	0.35	0.917351
7499	dm3.chr3L	15,183,262 – 15,183,337	- - - - - - - -	10329	15,183,262 – 15,183,337	+	6	75	81.42	-2.93	0.90	0.997935
7500	dm3.chr3L	15,191,265 – 15,191,358	- - - - - - - -	10330	15,191,265 – 15,191,358	+	6	99	74.60	-1.73	0.43	0.551593
7501	dm3.chr3L	15,197,571 – 15,197,665	- - - - - - - -	10331	15,197,571 – 15,197,665	-	11	106	69.54	-0.47	0.59	0.548590
7502	dm3.chr3L	15,202,837 – 15,202,929	- - - - - - - -	10332	15,202,837 – 15,202,929	-	10	101	90.97	-1.31	0.86	0.555445
7503	dm3.chr3L	15,227,609 – 15,227,730	- - - - - - - -	10333	15,227,609 – 15,227,709	+	10	119	73.00	-1.50	0.66	0.952501
7503	dm3.chr3L	15,227,609 – 15,227,730	- - - - - - - -	10334	15,227,627 – 15,227,730	+	10	115	77.58	-1.32	0.66	0.766161
7504	dm3.chr3L	15,247,707 – 15,247,808	- - - - - - - -	10335	15,247,707 – 15,247,799	+	8	94	70.79	-1.58	0.36	0.535071
7504	dm3.chr3L	15,247,707 – 15,247,808	- - - - - - - -	10336	15,247,718 – 15,247,808	+	8	92	70.00	-2.01	0.35	0.885596
7505	dm3.chr3L	15,248,486 – 15,248,579	- - - - - - - -	10337	15,248,486 – 15,248,579	-	6	111	66.52	-1.78	0.31	0.615329
7506	dm3.chr3L	15,250,648 – 15,250,753	- - - - - - - -	10338	15,250,648 – 15,250,753	+	4	105	94.31	-0.79	1.03	0.771577
7506	dm3.chr3L	15,250,648 – 15,250,753	- - - - - - - -	10339	15,250,648 – 15,250,753	-	4	105	94.31	-1.72	0.93	0.869892
7507	dm3.chr3L	15,255,139 – 15,255,229	- - - - - - - -	10340	15,255,139 – 15,255,229	-	6	92	87.86	-2.49	0.66	0.870028
7508	dm3.chr3L	15,259,033 – 15,259,140	- - - - - - - -	10341	15,259,033 – 15,259,140	+	5	112	82.39	-1.83	0.63	0.608873
7508	dm3.chr3L	15,259,033 – 15,259,140	- - - - - - - -	10342	15,259,033 – 15,259,140	-	5	112	82.39	-2.12	0.70	0.919296
7509	dm3.chr3L	15,266,860 – 15,266,955	- - - - - - - -	10343	15,266,860 – 15,266,955	+	5	105	87.11	-2.36	0.70	0.875368
7510	dm3.chr3L	15,268,866 – 15,268,957	- - - - - - - -	10344	15,268,866 – 15,268,957	+	10	111	79.54	-1.56	0.80	0.948403
7510	dm3.chr3L	15,268,866 – 15,268,957	- - - - - - - -	10345	15,268,866 – 15,268,957	-	10	111	79.54	-1.93	0.81	0.983637
7511	dm3.chr3L	15,271,430 – 15,271,564	- - - - - - - -	10346	15,271,430 – 15,271,530	-	6	102	74.64	-1.04	0.66	0.712766
7511	dm3.chr3L	15,271,430 – 15,271,564	- - - - - - - -	10347	15,271,459 – 15,271,564	-	11	110	75.80	-1.86	0.45	0.877074
7512	dm3.chr3L	15,272,366 – 15,272,467	- - - - - - - -	10348	15,272,366 – 15,272,467	+	8	109	71.84	-1.63	0.42	0.612216
7513	dm3.chr3L	15,275,072 – 15,275,172	- - - - - - - -	10349	15,275,072 – 15,275,172	+	10	101	65.42	-0.78	0.44	0.622985
7514	dm3.chr3L	15,279,570 – 15,279,626	- - - - - - - -	10350	15,279,570 – 15,279,626	+	5	56	94.29	-0.69	1.05	0.807178
7515	dm3.chr3L	15,280,936 – 15,281,035	- - - - - - - -	10351	15,280,936 – 15,281,035	-	8	112	88.86	-1.25	0.84	0.519203
7516	dm3.chr3L	15,283,311 – 15,283,428	- - - - - - - -	10352	15,283,311 – 15,283,414	+	11	119	69.13	-2.36	0.24	0.684246
7516	dm3.chr3L	15,283,311 – 15,283,428	- - - - - - - -	10353	15,283,320 – 15,283,428	+	12	123	66.92	-2.67	0.24	0.907089
7517	dm3.chr3L	15,290,633 – 15,290,828	- - - - - - - -	10354	15,290,633 – 15,290,742	-	4	109	84.86	-1.62	0.83	0.814689
				10355	15,290,742 – 15,290,828	+	5	87	85.19	-1.16	0.94	0.849443
				10356	15,290,742 – 15,290,828	-	5	87	85.19	-1.78	0.85	0.922722
7518	dm3.chr3L	15,293,132 – 15,293,238	- - - intron="intron;ID=intron_FBgn0036491:3_FBgn0036491:4;Name=Best4-in;Parent=FBtr0113172;parent_type=mRNA" - - - -	10357	15,293,132 – 15,293,238	-	5	112	62.34	-0.91	0.56	0.914238
7519	dm3.chr3L	15,296,217 – 15,296,313	- - - - - - - -	10358	15,296,217 – 15,296,313	-	7	102	68.68	-0.97	0.62	0.920572
7520	dm3.chr3L	15,305,018 – 15,305,132	- - - - - - - -	10359	15,305,018 – 15,305,132	-	8	115	78.97	-1.66	0.68	0.899293
7521	dm3.chr3L	15,315,296 – 15,315,360	- - - - - - - -	10360	15,315,296 – 15,315,360	+	4	64	90.10	-1.25	0.88	0.510201
7521	dm3.chr3L	15,315,296 – 15,315,360	- - - - - - - -	10361	15,315,296 – 15,315,360	-	4	64	90.10	-1.61	0.91	0.859169
7522	dm3.chr3L	15,323,225 – 15,323,277	- - - - - - - -	10362	15,323,225 – 15,323,277	-	5	57	79.42	-3.60	0.55	0.996886
7523	dm3.chr3L	15,326,460 – 15,326,558	- - - - - - - -	10363	15,326,460 – 15,326,558	+	11	98	82.10	-1.19	0.84	0.831266
7523	dm3.chr3L	15,326,460 – 15,326,558	- - - - - - - -	10364	15,326,460 – 15,326,558	-	11	98	82.10	-1.10	0.79	0.672591
7524	dm3.chr3L	15,344,742 – 15,344,860	- - - - - - - -	10365	15,344,742 – 15,344,860	-	6	118	78.17	-1.79	0.47	0.500000
7525	dm3.chr3L	15,364,980 – 15,365,065	- - - - - - - -	10366	15,364,980 – 15,365,065	-	6	86	75.33	-1.59	0.53	0.768558
7526	dm3.chr3L	15,366,212 – 15,366,306	- - - - - - - -	10367	15,366,212 – 15,366,306	-	6	94	90.19	-1.83	0.84	0.844798
7527	dm3.chr3L	15,374,728 – 15,374,808	- - - - - - - -	10368	15,374,728 – 15,374,808	+	12	80	99.20	-1.38	1.00	0.864106
7527	dm3.chr3L	15,374,728 – 15,374,808	- - - - - - - -	10369	15,374,728 – 15,374,808	-	12	80	99.20	-1.47	0.97	0.802887
7528	dm3.chr3L	15,375,176 – 15,375,266	- - - - - - - -	10370	15,375,176 – 15,375,266	+	5	90	94.44	-2.81	0.80	0.950748
7529	dm3.chr3L	15,382,924 – 15,383,030	- - - - - - - -	10371	15,382,924 – 15,383,030	-	5	106	91.69	-1.88	0.81	0.700369
7530	dm3.chr3L	15,384,696 – 15,384,791	- - - - - - - -	10372	15,384,696 – 15,384,791	+	9	105	75.19	-1.42	0.50	0.718879
7531	dm3.chr3L	15,388,775 – 15,388,870	- - - - - - - -	10373	15,388,775 – 15,388,870	+	6	95	89.05	-1.98	0.77	0.807243
7532	dm3.chr3L	15,390,720 – 15,390,833	- - - - - - - -	10374	15,390,720 – 15,390,833	+	12	118	95.92	-1.53	0.99	0.925778
7533	dm3.chr3L	15,394,719 – 15,394,866	- - - - - - - -	10375	15,394,719 – 15,394,866	+	3	147	98.64	-1.08	0.97	0.543609
7534	dm3.chr3L	15,399,251 – 15,399,344	- - - - - - - -	10376	15,399,251 – 15,399,344	-	12	112	79.83	-1.43	0.65	0.672154
7535	dm3.chr3L	15,409,702 – 15,409,812	- - - - - - - -	10377	15,409,702 – 15,409,812	+	9	119	81.11	-2.25	0.61	0.955377
7536	dm3.chr3L	15,417,231 – 15,417,334	- - - - - - - -	10378	15,417,231 – 15,417,334	+	4	112	67.37	-1.05	0.54	0.651559
7537	dm3.chr3L	15,417,481 – 15,417,576	- - - - - - - -	10379	15,417,481 – 15,417,576	-	6	106	55.82	-1.72	0.33	0.944475
7538	dm3.chr3L	15,425,079 – 15,425,140	- - - - - - - -	10380	15,425,079 – 15,425,140	+	5	61	99.34	-2.13	1.00	0.977452
7538	dm3.chr3L	15,425,079 – 15,425,140	- - - - - - - -	10381	15,425,079 – 15,425,140	-	5	61	99.34	-2.18	1.00	0.979919
7539	dm3.chr3L	15,425,769 – 15,425,832	- - - - - - - -	10382	15,425,769 – 15,425,832	+	11	67	65.90	-2.35	0.18	0.544454
7540	dm3.chr3L	15,437,894 – 15,437,952	- - - - - - - -	10383	15,437,894 – 15,437,952	+	10	63	76.08	-2.71	0.71	0.998936
7541	dm3.chr3L	15,441,245 – 15,441,339	- - - - - - - -	10384	15,441,245 – 15,441,339	-	6	108	70.34	-0.95	0.56	0.709011
7542	dm3.chr3L	15,447,537 – 15,447,635	- - - - - - - -	10385	15,447,537 – 15,447,635	+	5	102	95.35	-1.98	0.87	0.815791
7543	dm3.chr3L	15,461,978 – 15,462,047	- - - - - - - -	10386	15,461,978 – 15,462,047	+	6	70	94.90	-1.27	0.91	0.522236
7544	dm3.chr3L	15,474,068 – 15,474,183	- - - - - - - -	10387	15,474,068 – 15,474,158	+	12	121	77.36	-1.10	0.67	0.538363
7544	dm3.chr3L	15,474,068 – 15,474,183	- - - - - - - -	10388	15,474,080 – 15,474,183	+	12	118	77.82	-2.12	0.53	0.947073
7545	dm3.chr3L	15,476,123 – 15,476,217	- - - - - - - -	10389	15,476,123 – 15,476,217	-	12	119	74.75	-1.20	0.53	0.559890
7546	dm3.chr3L	15,479,004 – 15,479,062	- - - - - - - -	10390	15,479,004 – 15,479,062	+	5	58	83.36	-1.77	0.70	0.735778
7547	dm3.chr3L	15,484,625 – 15,484,724	- - - - - - - -	10391	15,484,625 – 15,484,724	+	10	114	84.40	-1.08	0.88	0.750964
7547	dm3.chr3L	15,484,625 – 15,484,724	- - - - - - - -	10392	15,484,625 – 15,484,724	-	10	114	84.40	-1.31	0.75	0.550815
7548	dm3.chr3L	15,492,156 – 15,492,256	- - CDS="CDS;ID=CDS_CG7275:1_307;Name=CG7275-cds;Parent=FBtr0075547;parent_type=mRNA" - - - - -	10393	15,492,156 – 15,492,256	-	11	125	68.57	-1.94	0.31	0.702677
7549	dm3.chr3L	15,495,073 – 15,495,214	- - - intron="intron;ID=intron_FBgn0036501:1_FBgn0036501:2;Name=CG7272-in;Parent=FBtr0075548;parent_type=mRNA" - - - -	10394	15,495,073 – 15,495,214	-	3	141	91.61	-1.33	0.89	0.514247
7550	dm3.chr3L	15,497,707 – 15,497,827	- - CDS="CDS;ID=CDS_FBgn0026738:2_305;Name=CG7857-cds;Parent=FBtr0075605;parent_type=mRNA" - - - - -	10395	15,497,707 – 15,497,827	+	6	120	89.33	-1.86	0.75	0.593186
7551	dm3.chr3L	15,500,254 – 15,500,396	- - - intron="intron;ID=intron_FBgn0036502:3_FBgn0036502:2;Name=CG7841-in;Parent=FBtr0075604;parent_type=mRNA" - - - -	10396	15,500,254 – 15,500,361	-	5	107	85.89	-2.42	0.82	0.977004
7551	dm3.chr3L	15,500,254 – 15,500,396		10397	15,500,290 – 15,500,396	-	5	106	95.04	-2.68	0.93	0.987849
7552	dm3.chr3L	15,506,763 – 15,506,858	- - - - - - - -	10398	15,506,763 – 15,506,858	-	6	104	62.02	-1.43	0.36	0.612576
7553	dm3.chr3L	15,508,682 – 15,508,828	- - - - - - - -	10399	15,508,682 – 15,508,789	-	4	108	78.09	-1.99	0.58	0.777913
7553	dm3.chr3L	15,508,682 – 15,508,828	- - - - - - - -	10400	15,508,716 – 15,508,828	+	5	112	79.98	-1.49	0.65	0.635498
7554	dm3.chr3L	15,524,294 – 15,524,387	- - - - - - - -	10401	15,524,294 – 15,524,387	+	5	99	84.66	-1.81	0.84	0.913570
7555	dm3.chr3L	15,530,688 – 15,530,779	- - - intron="intron;ID=intron_FBgn0004396:1_FBgn0004396:2;Name=CrebA-in;Parent=FBtr0075557,FBtr0075558;parent_type=mRNA" - - - -	10402	15,530,688 – 15,530,779	-	8	91	89.20	-2.41	0.70	0.887624
7556	dm3.chr3L	15,536,385 – 15,536,482	- - - intron="intron;ID=intron_FBgn0004396:1_FBgn0004396:2;Name=CrebA-in;Parent=FBtr0075557,FBtr0075558;parent_type=mRNA" - - - -	10403	15,536,385 – 15,536,482	+	9	103	90.84	-2.36	0.82	0.947831
7556	dm3.chr3L	15,536,385 – 15,536,482		10404	15,536,385 – 15,536,482	-	9	103	90.84	-1.79	1.00	0.979936
7557	dm3.chr3L	15,537,177 – 15,537,272	- - - intron="intron;ID=intron_FBgn0004396:1_FBgn0004396:2;Name=CrebA-in;Parent=FBtr0075557,FBtr0075558;parent_type=mRNA" - - - -	10405	15,537,177 – 15,537,272	+	6	117	85.73	-2.08	0.74	0.854604
7558	dm3.chr3L	15,538,096 – 15,538,183	- - - intron="intron;ID=intron_FBgn0004396:1_FBgn0004396:2;Name=CrebA-in;Parent=FBtr0075557,FBtr0075558;parent_type=mRNA" - - - -	10406	15,538,096 – 15,538,183	-	9	88	83.46	-2.13	0.67	0.930471
7559	dm3.chr3L	15,541,510 – 15,541,607	- - - intron="intron;ID=intron_FBgn0004396:2_FBgn0004396:3;Name=CrebA-in;Parent=FBtr0075557,FBtr0075558;parent_type=mRNA" - - - -	10407	15,541,510 – 15,541,607	+	4	113	79.78	-1.40	0.79	0.719494
7560	dm3.chr3L	15,586,690 – 15,586,780	- - - intron="intron;ID=intron_FBgn0036518:1_FBgn0036518:2;Name=RhoGAP71E-in;Parent=FBtr0075567,FBtr0075568,FBtr0075569,FBtr0290065,FBtr0303510;parent_type=mRNA" - - - -	10408	15,586,690 – 15,586,780	-	7	91	78.21	-2.58	0.35	0.593736
7561	dm3.chr3L	15,587,569 – 15,587,635	- - - intron="intron;ID=intron_FBgn0036518:1_FBgn0036518:2;Name=RhoGAP71E-in;Parent=FBtr0075567,FBtr0075568,FBtr0075569,FBtr0290065,FBtr0303510;parent_type=mRNA" - - - -	10409	15,587,569 – 15,587,635	+	9	70	61.49	-1.77	0.34	0.962564
7562	dm3.chr3L	15,588,802 – 15,588,859	- - - intron="intron;ID=intron_FBgn0036518:1_FBgn0036518:2;Name=RhoGAP71E-in;Parent=FBtr0075567,FBtr0075568,FBtr0075569,FBtr0290065,FBtr0303510;parent_type=mRNA" - - - -	10410	15,588,802 – 15,588,859	+	5	61	68.07	-1.38	0.53	0.901862
7562	dm3.chr3L	15,588,802 – 15,588,859		10411	15,588,802 – 15,588,859	-	5	61	68.07	-0.99	0.63	0.890767
7563	dm3.chr3L	15,589,227 – 15,589,332	- - - intron="intron;ID=intron_FBgn0036518:1_FBgn0036518:2;Name=RhoGAP71E-in;Parent=FBtr0075567,FBtr0075568,FBtr0075569,FBtr0290065,FBtr0303510;parent_type=mRNA" - - - -	10412	15,589,227 – 15,589,332	-	5	123	78.66	-1.68	0.67	0.752496
7564	dm3.chr3L	15,590,356 – 15,590,463	- - - intron="intron;ID=intron_FBgn0036518:1_FBgn0036518:2;Name=RhoGAP71E-in;Parent=FBtr0075567,FBtr0075568,FBtr0075569,FBtr0290065,FBtr0303510;parent_type=mRNA" - - - -	10413	15,590,356 – 15,590,463	-	4	107	88.61	-2.21	0.76	0.812141
7565	dm3.chr3L	15,592,120 – 15,592,222	- - - intron="intron;ID=intron_FBgn0036518:1_FBgn0036518:2;Name=RhoGAP71E-in;Parent=FBtr0075567,FBtr0075568,FBtr0075569,FBtr0290065,FBtr0303510;parent_type=mRNA" - - - -	10414	15,592,120 – 15,592,222	-	6	115	65.05	-1.73	0.43	0.935872
7566	dm3.chr3L	15,594,157 – 15,594,247	- - - intron="intron;ID=intron_FBgn0036518:3_FBgn0036518:4;Name=RhoGAP71E-in;Parent=FBtr0075567,FBtr0075568,FBtr0075569,FBtr0290065,FBtr0303510;parent_type=mRNA" - - - -	10415	15,594,157 – 15,594,247	+	6	98	69.31	-1.21	0.45	0.602117
7567	dm3.chr3L	15,610,075 – 15,610,178	- - - intron="intron;ID=intron_FBgn0259236:2_FBgn0259236:1;Name=comm3-in;Parent=FBtr0299851;parent_type=mRNA" - - - -	10416	15,610,075 – 15,610,168	+	7	116	73.81	-2.25	0.47	0.938029
7567	dm3.chr3L	15,610,075 – 15,610,178		10417	15,610,081 – 15,610,178	+	10	115	71.63	-1.46	0.76	0.979516
7568	dm3.chr3L	15,617,891 – 15,617,963	- - - - - - - -	10418	15,617,891 – 15,617,963	-	7	72	74.89	-0.91	0.92	0.877117
7569	dm3.chr3L	15,621,719 – 15,621,817	- - - - - - - -	10419	15,621,719 – 15,621,817	-	6	98	90.00	-2.10	0.70	0.606263
7570	dm3.chr3L	15,625,277 – 15,625,394	- - CDS="CDS;ID=CDS_FBgn0259236:2_381;Name=comm3-cds;Parent=FBtr0299851;parent_type=mRNA" - - - - -	10420	15,625,277 – 15,625,394	+	11	120	83.37	-1.79	0.60	0.625359
7571	dm3.chr3L	15,631,497 – 15,631,622	- - - - - - - -	10421	15,631,497 – 15,631,622	-	4	133	74.55	-1.89	0.65	0.881873
7572	dm3.chr3L	15,638,874 – 15,638,975	- - - - - - - -	10422	15,638,874 – 15,638,975	+	5	110	83.89	-1.64	0.68	0.532787
7573	dm3.chr3L	15,646,636 – 15,646,769	- - - - - - - -	10423	15,646,636 – 15,646,743	-	4	110	84.33	-2.47	0.79	0.975055
7573	dm3.chr3L	15,646,636 – 15,646,769	- - - - - - - -	10424	15,646,670 – 15,646,769	-	5	108	77.97	-1.77	0.67	0.872269
7574	dm3.chr3L	15,647,821 – 15,647,941	- - CDS="CDS;ID=CDS_FBgn0004592:1_451;Name=Eig71Ee-cds;Parent=FBtr0075585;parent_type=mRNA" - - - - -	10425	15,647,821 – 15,647,941	+	5	120	84.92	-1.83	0.74	0.772270
7575	dm3.chr3L	15,647,981 – 15,648,168	- - CDS="CDS;ID=CDS_FBgn0004592:1_451;Name=Eig71Ee-cds;Parent=FBtr0075585;parent_type=mRNA" - - - - -	10426	15,647,981 – 15,648,098	+	5	120	80.12	-1.97	0.62	0.840702
				10427	15,648,018 – 15,648,131	+	5	120	69.10	-1.37	0.55	0.856397
				10428	15,648,058 – 15,648,168	+	3	120	60.97	-1.10	0.53	0.686536
7576	dm3.chr3L	15,662,805 – 15,662,910	- - - - - - - -	10429	15,662,805 – 15,662,910	-	6	115	78.57	-2.11	0.48	0.760611
7577	dm3.chr3L	15,667,609 – 15,667,663	- - - - - - - -	10430	15,667,609 – 15,667,663	-	7	58	67.82	-1.83	0.49	0.985716
7578	dm3.chr3L	15,677,318 – 15,677,448	- - CDS="CDS;ID=CDS_CG7297:1_279;Name=pgant8-cds;Parent=FBtr0075578;parent_type=mRNA" - - - - -	10431	15,677,318 – 15,677,448	+	11	140	66.44	-1.22	0.36	0.646867
7579	dm3.chr3L	15,681,330 – 15,681,421	- - - - - - - -	10432	15,681,330 – 15,681,421	+	7	99	77.03	-2.22	0.47	0.831341
7580	dm3.chr3L	15,698,495 – 15,698,605	- - - - - - - -	10433	15,698,495 – 15,698,605	+	8	115	67.46	-1.92	0.40	0.964531
7581	dm3.chr3L	15,698,972 – 15,699,027	- - - - - - - -	10434	15,698,972 – 15,699,027	+	5	59	66.61	-1.57	0.36	0.500000
7582	dm3.chr3L	15,706,769 – 15,706,865	- - - - - - - -	10435	15,706,769 – 15,706,865	-	4	96	86.17	-2.16	0.75	0.871274
7583	dm3.chr3L	15,708,759 – 15,708,818	- - - - - - - -	10436	15,708,759 – 15,708,818	+	6	60	96.07	-2.70	0.99	0.994700
7583	dm3.chr3L	15,708,759 – 15,708,818	- - - - - - - -	10437	15,708,759 – 15,708,818	-	6	60	96.07	-1.90	0.96	0.945960
7584	dm3.chr3L	15,712,606 – 15,712,695	- - CDS="CDS;ID=CDS_FBgn0260776:6_438;Name=CG42570-cds;Parent=FBtr0301333;parent_type=mRNA" - - - - -	10438	15,712,606 – 15,712,695	+	5	116	75.35	-3.96	0.78	0.999553
7584	dm3.chr3L	15,712,606 – 15,712,695		10439	15,712,606 – 15,712,695	-	5	116	75.35	-3.81	0.70	0.999501
7585	dm3.chr3L	15,716,619 – 15,716,692	- - - intron="intron;ID=intron_FBgn0010105:2_FBgn0010105:1;Name=comm-in;Parent=FBtr0075579;parent_type=mRNA" - - - -	10440	15,716,619 – 15,716,692	+	7	76	71.57	-2.17	0.50	0.992979
7585	dm3.chr3L	15,716,619 – 15,716,692		10441	15,716,619 – 15,716,692	-	7	76	71.57	-1.43	0.54	0.948534
7586	dm3.chr3L	15,723,587 – 15,723,672	- - - - - - - -	10442	15,723,587 – 15,723,672	+	7	98	67.51	-2.13	0.31	0.834603
7587	dm3.chr3L	15,724,072 – 15,724,183	- - - - - - - -	10443	15,724,072 – 15,724,183	+	5	112	73.41	-1.97	0.39	0.559893
7588	dm3.chr3L	15,724,725 – 15,724,776	- - - - - - - -	10444	15,724,725 – 15,724,776	-	5	51	98.82	-2.19	1.00	0.981386
7589	dm3.chr3L	15,726,521 – 15,726,596	- - - - - - - -	10445	15,726,521 – 15,726,596	+	4	78	83.44	-2.24	0.63	0.781132
7589	dm3.chr3L	15,726,521 – 15,726,596	- - - - - - - -	10446	15,726,521 – 15,726,596	-	4	78	83.44	-2.35	0.78	0.969300
7590	dm3.chr3L	15,736,376 – 15,736,491	- - - - - - - -	10447	15,736,376 – 15,736,491	-	4	116	79.86	-1.71	0.63	0.579766
7591	dm3.chr3L	15,738,343 – 15,738,441	- - - - - - - -	10448	15,738,343 – 15,738,441	+	12	110	72.12	-1.09	0.53	0.830116
7592	dm3.chr3L	15,743,040 – 15,743,143	- - - - - - - -	10449	15,743,040 – 15,743,143	+	8	109	72.77	-2.42	0.43	0.960372
7593	dm3.chr3L	15,745,175 – 15,745,252	- - - - - - - -	10450	15,745,175 – 15,745,252	+	6	77	69.05	-1.07	0.48	0.604115
7594	dm3.chr3L	15,748,134 – 15,748,245	- - - - - - - -	10451	15,748,134 – 15,748,227	-	10	112	62.79	-2.15	0.25	0.868020
7594	dm3.chr3L	15,748,134 – 15,748,245	- - - - - - - -	10452	15,748,152 – 15,748,245	-	11	119	66.17	-2.00	0.27	0.500000
7595	dm3.chr3L	15,755,117 – 15,755,212	- - - - - - - -	10453	15,755,117 – 15,755,212	+	6	99	73.15	-1.34	0.48	0.506232
7596	dm3.chr3L	15,765,277 – 15,765,396	- - - - - - - -	10454	15,765,277 – 15,765,370	-	7	105	68.38	-1.72	0.57	0.992690
7596	dm3.chr3L	15,765,277 – 15,765,396	- - - - - - - -	10455	15,765,298 – 15,765,396	-	8	106	63.34	-1.68	0.31	0.822447
7597	dm3.chr3L	15,765,652 – 15,765,746	- - - - - - - -	10456	15,765,652 – 15,765,746	+	11	113	73.85	-1.24	0.59	0.641395
7598	dm3.chr3L	15,770,870 – 15,771,023	- - - - - - - -	10457	15,770,870 – 15,770,927	-	4	57	92.98	-1.58	0.95	0.889027
7598	dm3.chr3L	15,770,870 – 15,771,023	- - - - - - - -	10458	15,770,927 – 15,771,023	+	5	97	94.52	-2.17	0.85	0.862915
7599	dm3.chr3L	15,777,937 – 15,778,030	- - - - - - - -	10459	15,777,937 – 15,778,030	+	6	93	78.78	-1.67	0.61	0.845053
7599	dm3.chr3L	15,777,937 – 15,778,030	- - - - - - - -	10460	15,777,937 – 15,778,030	-	6	93	78.78	-1.62	0.61	0.818908
7600	dm3.chr3L	15,780,418 – 15,780,531	- - - - - - - -	10461	15,780,418 – 15,780,508	+	9	94	77.75	-2.68	0.87	0.998025
				10462	15,780,418 – 15,780,508	-	9	94	77.75	-2.77	0.69	0.997965
				10463	15,780,439 – 15,780,531	+	12	114	75.31	-2.49	0.78	0.997830
				10464	15,780,439 – 15,780,531	-	12	114	75.31	-2.19	0.73	0.994857
7601	dm3.chr3L	15,783,840 – 15,783,938	- - - - - - - -	10465	15,783,840 – 15,783,938	+	5	128	66.28	-0.86	0.58	0.595684
7601	dm3.chr3L	15,783,840 – 15,783,938	- - - - - - - -	10466	15,783,840 – 15,783,938	-	5	128	66.28	-1.84	0.53	0.965321
7602	dm3.chr3L	15,788,381 – 15,788,474	- - - - - - - -	10467	15,788,381 – 15,788,474	+	11	112	85.91	-1.98	0.60	0.536943
7603	dm3.chr3L	15,790,427 – 15,790,530	- - - - - - - -	10468	15,790,427 – 15,790,530	-	11	113	87.73	-2.61	0.55	0.791921
7604	dm3.chr3L	15,814,543 – 15,814,599	- - CDS="CDS;ID=CDS_FBgn0036534:1_370;Name=Dcp2-cds;Parent=FBtr0304975;parent_type=mRNA" - - - - -	10469	15,814,543 – 15,814,599	-	12	56	89.77	-1.80	0.89	0.932155
7605	dm3.chr3L	15,821,412 – 15,821,467	- - CDS="CDS;ID=CDS_CG6224:3_296;Name=dbo-cds;Parent=FBtr0075505;parent_type=mRNA" - - - - -	10470	15,821,412 – 15,821,467	+	9	55	63.63	-1.53	0.59	0.998397
7606	dm3.chr3L	15,836,505 – 15,836,595	FBnoncoding="pre_miRNA;ID=FBtr0304186;Name=mir-263b-RM;Parent=FBgn0262371;Alias=CR42886-RM;Dbxref=FlyBase_Annotation_IDs:CR42886-RM,miRBase:MI0000383" - - intron="intron;ID=intron_CG32150:1_CG32150:6;Name=CG32150-in;Parent=FBtr0075534;parent_type=mRNA" "Rfam_10.0=RF00706;mir-263;AAKO01000155.1/113420-113509\|1.8e-42" - - "mirBase_v16=dme-mir-263b\|1.4e-46"	10471	15,836,505 – 15,836,595	+	11	96	80.52	-3.82	0.71	0.999627
7606	dm3.chr3L	15,836,505 – 15,836,595		10472	15,836,505 – 15,836,595	-	11	96	80.52	-4.88	0.67	0.999850
7607	dm3.chr3L	15,839,684 – 15,839,778	- - - - - - - -	10473	15,839,684 – 15,839,778	+	8	95	89.93	-1.66	0.79	0.594501
7608	dm3.chr3L	15,840,219 – 15,840,335	- - - - - - - -	10474	15,840,219 – 15,840,335	-	8	120	72.81	-1.65	0.39	0.535429
7609	dm3.chr3L	15,849,333 – 15,849,463	- - CDS="CDS;ID=CDS_CG12486:1_320;Name=CG12486-cds;Parent=FBtr0075533;parent_type=mRNA" intron="intron;ID=intron_FBgn0036542:5_FBgn0036542:4;Name=pHCl-in;Parent=FBtr0100037;parent_type=mRNA" - - - -	10475	15,849,333 – 15,849,430	-	6	97	86.46	-1.52	0.81	0.733320
7609	dm3.chr3L	15,849,333 – 15,849,463		10476	15,849,366 – 15,849,463	-	7	97	78.91	-1.51	0.59	0.757771
7610	dm3.chr3L	15,855,051 – 15,855,150	- - - intron="intron;ID=intron_FBgn0036542:7_FBgn0036542:6;Name=pHCl-in;Parent=FBtr0100035;parent_type=mRNA" - - - -	10477	15,855,051 – 15,855,150	+	8	113	82.50	-1.98	0.64	0.793960
7611	dm3.chr3L	15,866,232 – 15,866,324	- - - intron="intron;ID=intron_FBgn0036542:18_FBgn0036542:17;Name=pHCl-in;Parent=FBtr0100034,FBtr0100035,FBtr0100036,FBtr0100037,FBtr0301510;parent_type=mRNA" - - - -	10478	15,866,232 – 15,866,324	+	8	115	71.87	-1.05	0.75	0.923265
7612	dm3.chr3L	15,871,795 – 15,871,902	- - - intron="intron;ID=intron_FBgn0036542:18_FBgn0036542:17;Name=pHCl-in;Parent=FBtr0100034,FBtr0100035,FBtr0100036,FBtr0100037,FBtr0301510;parent_type=mRNA" - - - -	10479	15,871,795 – 15,871,902	-	7	109	79.95	-2.31	0.62	0.976030
7613	dm3.chr3L	15,873,635 – 15,873,728	- - - intron="intron;ID=intron_FBgn0036542:19_FBgn0036542:18;Name=pHCl-in;Parent=FBtr0100034,FBtr0100035,FBtr0100036,FBtr0100037,FBtr0301510;parent_type=mRNA" - - - -	10480	15,873,635 – 15,873,728	-	8	117	83.98	-1.07	0.87	0.633441
7614	dm3.chr3L	15,880,380 – 15,880,472	- - - intron="intron;ID=intron_FBgn0036542:19_FBgn0036542:18;Name=pHCl-in;Parent=FBtr0100034,FBtr0100035,FBtr0100036,FBtr0100037,FBtr0301510;parent_type=mRNA" - - - -	10481	15,880,380 – 15,880,472	-	4	92	89.67	-2.03	0.72	0.522469
7615	dm3.chr3L	15,883,736 – 15,883,844	- - - intron="intron;ID=intron_FBgn0036542:19_FBgn0036542:18;Name=pHCl-in;Parent=FBtr0100034,FBtr0100035,FBtr0100036,FBtr0100037,FBtr0301510;parent_type=mRNA" - - - -	10482	15,883,736 – 15,883,844	+	9	120	90.94	-2.45	0.72	0.866511
7615	dm3.chr3L	15,883,736 – 15,883,844		10483	15,883,736 – 15,883,844	-	9	120	90.94	-2.45	0.78	0.936789
7616	dm3.chr3L	15,898,025 – 15,898,150	- - - intron="intron;ID=intron_FBgn0036544:8_FBgn0036544:7;Name=sff-in;Parent=FBtr0089527;parent_type=mRNA" - - - -	10484	15,898,025 – 15,898,150	+	5	125	80.54	-3.84	0.78	0.999333
7616	dm3.chr3L	15,898,025 – 15,898,150		10485	15,898,025 – 15,898,150	-	5	125	80.54	-4.09	0.70	0.999495
7617	dm3.chr3L	15,917,955 – 15,918,207	- - - - - - - -	10486	15,917,955 – 15,918,087	-	5	133	97.74	-3.20	0.96	0.995719
7617	dm3.chr3L	15,917,955 – 15,918,207	- - - - - - - -	10487	15,918,087 – 15,918,207	+	6	128	71.93	-1.32	0.59	0.905649
7618	dm3.chr3L	15,939,554 – 15,939,647	- - - intron="intron;ID=intron_CG6117:3_CG6117:4;Name=Pka-C3-in;Parent=FBtr0075528,FBtr0075529;parent_type=mRNA" - - - -	10488	15,939,554 – 15,939,647	-	5	119	72.08	-1.07	0.82	0.886887
7619	dm3.chr3L	15,941,619 – 15,941,711	- - - intron="intron;ID=intron_CG6117:10_CG6117:3;Name=Pka-C3-in;Parent=FBtr0075529;parent_type=mRNA" - - - -	10489	15,941,619 – 15,941,711	+	5	97	92.23	-2.98	0.88	0.991990
7620	dm3.chr3L	15,960,767 – 15,960,866	- - CDS="CDS;ID=CDS_CG5931:1_308;Name=CG5931-cds;Parent=FBtr0075527;parent_type=mRNA" - - - - -	10490	15,960,767 – 15,960,866	-	14	111	67.87	-1.09	0.40	0.704209
7621	dm3.chr3L	15,981,288 – 15,981,396	- - - - - - - -	10491	15,981,288 – 15,981,396	+	5	108	97.22	-0.89	0.98	0.508977
7622	dm3.chr3L	15,988,742 – 15,988,843	- - CDS="CDS;ID=CDS_CG5830:3_282;Name=CG5830-cds;Parent=FBtr0075521;parent_type=mRNA" - - - - -	10492	15,988,742 – 15,988,843	-	15	114	79.03	-1.46	0.50	0.524991
7623	dm3.chr3L	15,997,215 – 15,997,306	- - - intron="intron;ID=intron_CG5830:1_CG5830:2;Name=CG5830-in;Parent=FBtr0075521;parent_type=mRNA" - - - -	10493	15,997,215 – 15,997,306	+	8	92	63.90	-2.89	0.15	0.838275
7624	dm3.chr3L	16,010,954 – 16,011,011	- - - - - - - -	10494	16,010,954 – 16,011,011	+	12	57	97.53	-1.86	0.85	0.585586
7624	dm3.chr3L	16,010,954 – 16,011,011	- - - - - - - -	10495	16,010,954 – 16,011,011	-	12	57	97.53	-2.40	1.00	0.990681
7625	dm3.chr3L	16,011,815 – 16,011,923	- - - - - - - -	10496	16,011,815 – 16,011,923	-	4	114	87.58	-2.21	0.77	0.873122
7626	dm3.chr3L	16,014,406 – 16,014,510	- - - - - - - -	10497	16,014,406 – 16,014,510	-	9	114	88.38	-1.89	0.67	0.500000
7627	dm3.chr3L	16,030,195 – 16,030,280	- - CDS="CDS;ID=CDS_FBgn0036560:5_344;Name=CG5895-cds;Parent=FBtr0301003;parent_type=mRNA" - - - - -	10498	16,030,195 – 16,030,280	+	11	99	56.04	-0.64	0.38	0.582899
7628	dm3.chr3L	16,038,285 – 16,038,379	- - - - - - - -	10499	16,038,285 – 16,038,379	-	9	101	61.02	-1.46	0.34	0.875361
7629	dm3.chr3L	16,051,416 – 16,051,472	- - - intron="intron;ID=intron_FBgn0005536:6_FBgn0005536:7;Name=Mbs-in;Parent=FBtr0301473;parent_type=mRNA" - - - -	10500	16,051,416 – 16,051,472	-	6	61	83.91	-2.06	0.61	0.662098
7630	dm3.chr3L	16,052,159 – 16,052,230	- - - intron="intron;ID=intron_FBgn0005536:6_FBgn0005536:7;Name=Mbs-in;Parent=FBtr0301473;parent_type=mRNA" - - - -	10501	16,052,159 – 16,052,230	+	6	71	87.22	-2.00	0.68	0.653226
7630	dm3.chr3L	16,052,159 – 16,052,230		10502	16,052,159 – 16,052,230	-	6	71	87.22	-1.97	0.81	0.912055
7631	dm3.chr3L	16,063,182 – 16,063,279	- - - - - - - -	10503	16,063,182 – 16,063,279	+	12	114	70.21	-0.69	0.56	0.719207
7631	dm3.chr3L	16,063,182 – 16,063,279	- - - - - - - -	10504	16,063,182 – 16,063,279	-	12	114	70.21	-0.96	0.47	0.610157
7632	dm3.chr3L	16,063,319 – 16,063,410	- - - intron="intron;ID=intron_FBgn0005536:19_FBgn0005536:20;Name=Mbs-in;Parent=FBtr0112851,FBtr0112852,FBtr0301472,FBtr0301473,FBtr0301575;parent_type=mRNA" - - - -	10505	16,063,319 – 16,063,410	-	12	97	63.47	-0.28	0.47	0.661851
7633	dm3.chr3L	16,083,929 – 16,083,989	- - CDS="CDS;ID=CDS_FBgn0036566:1_454;Name=ClC-c-cds;Parent=FBtr0302503;parent_type=mRNA" intron="intron;ID=intron_FBgn0036566:2_FBgn0036566:3;Name=ClC-c-in;Parent=FBtr0075444;parent_type=mRNA" - - - -	10506	16,083,929 – 16,083,989	-	11	60	80.61	-1.55	0.52	0.568091
7634	dm3.chr3L	16,130,359 – 16,130,476	- - - - - - - -	10507	16,130,359 – 16,130,471	+	3	112	98.21	-0.94	0.98	0.505923
7634	dm3.chr3L	16,130,359 – 16,130,476	- - - - - - - -	10508	16,130,359 – 16,130,476	+	3	117	97.72	-0.97	0.99	0.606079
7635	dm3.chr3L	16,136,796 – 16,136,887	- - CDS="CDS;ID=CDS_CG32152:1_305;Name=CG32152-cds;Parent=FBtr0075489;parent_type=mRNA" intron="intron;ID=intron_FBgn0036576:5_FBgn0036576:3;Name=CG5151-in;Parent=FBtr0075488;parent_type=mRNA" - - - -	10509	16,136,796 – 16,136,887	-	5	118	58.12	-1.55	0.31	0.607153
7636	dm3.chr3L	16,142,565 – 16,142,633	- - - - - - - -	10510	16,142,565 – 16,142,633	+	6	71	74.49	-1.37	0.75	0.942783
7637	dm3.chr3L	16,147,901 – 16,148,034	- - - - - - - -	10511	16,147,901 – 16,148,005	+	7	112	72.61	-2.00	0.49	0.956477
				10512	16,147,901 – 16,148,005	-	7	112	72.61	-1.93	0.53	0.969409
				10513	16,147,931 – 16,148,034	+	7	108	73.78	-1.48	0.59	0.909573
				10514	16,147,931 – 16,148,034	-	7	108	73.78	-1.46	0.53	0.797228
7638	dm3.chr3L	16,148,146 – 16,148,205	- - - - - - - -	10515	16,148,146 – 16,148,205	+	6	59	80.11	-2.20	0.74	0.985936
7639	dm3.chr3L	16,152,681 – 16,152,775	- - - - - - - -	10516	16,152,681 – 16,152,775	-	3	94	84.76	-1.72	0.81	0.726356
7640	dm3.chr3L	16,154,738 – 16,154,801	- - - - - - - -	10517	16,154,738 – 16,154,801	-	6	65	89.21	-1.72	0.79	0.660315
7641	dm3.chr3L	16,155,581 – 16,155,635	- - - - - - - -	10518	16,155,581 – 16,155,635	-	4	56	94.01	-2.05	0.89	0.898918
7642	dm3.chr3L	16,155,662 – 16,155,752	- - - - - - - -	10519	16,155,662 – 16,155,752	-	4	95	67.68	-0.79	0.60	0.534101
7643	dm3.chr3L	16,168,325 – 16,168,418	- - - - - - - -	10520	16,168,325 – 16,168,418	-	5	93	81.96	-1.60	0.66	0.579717
7644	dm3.chr3L	16,170,583 – 16,170,672	- - - - - - - -	10521	16,170,583 – 16,170,672	+	4	92	70.72	-1.54	0.48	0.569342
7644	dm3.chr3L	16,170,583 – 16,170,672	- - - - - - - -	10522	16,170,583 – 16,170,672	-	4	92	70.72	-2.23	0.55	0.980550
7645	dm3.chr3L	16,184,929 – 16,185,055	- - - - - - - -	10523	16,184,929 – 16,185,055	+	13	132	81.55	-1.99	0.71	0.981128
7645	dm3.chr3L	16,184,929 – 16,185,055	- - - - - - - -	10524	16,184,929 – 16,185,055	-	13	132	81.55	-1.66	0.76	0.963808
7646	dm3.chr3L	16,185,858 – 16,185,939	- - - - - - - -	10525	16,185,858 – 16,185,939	-	6	81	99.34	-2.21	1.00	0.981181
7647	dm3.chr3L	16,188,326 – 16,188,395	- - - - - - - -	10526	16,188,326 – 16,188,395	-	6	72	73.10	-1.27	0.67	0.889494
7648	dm3.chr3L	16,188,775 – 16,188,868	- - - - - - - -	10527	16,188,775 – 16,188,868	+	7	107	84.23	-1.76	0.78	0.879766
7649	dm3.chr3L	16,196,054 – 16,196,104	- - - - - - - -	10528	16,196,054 – 16,196,104	+	9	53	87.21	-1.56	0.76	0.602947
7650	dm3.chr3L	16,202,662 – 16,202,757	- - - - - - - -	10529	16,202,662 – 16,202,757	+	6	106	86.55	-1.80	0.70	0.527249
7651	dm3.chr3L	16,215,127 – 16,215,220	FBnoncoding="tRNA;ID=FBtr0075456;Name=tRNA:CR32153-RA;Parent=FBgn0052153;Alias=CR32153-RA;Dbxref=FlyBase_Annotation_IDs:CR32153-RA;score_text=Weakly" tRNAscann="Met_chr3L_trna29" - - "Rfam_10.0=RF00005;tRNA;AAWU01021761.1/90707-90779\|9.0e-23" - - -	10530	16,215,127 – 16,215,220	+	10	106	83.06	-1.04	0.93	0.880442
7651	dm3.chr3L	16,215,127 – 16,215,220		10531	16,215,127 – 16,215,220	-	10	106	83.06	-1.62	0.97	0.979137
7652	dm3.chr3L	16,216,230 – 16,216,300	- - - - - - - -	10532	16,216,230 – 16,216,300	+	8	77	84.27	-3.72	0.79	0.999026
7652	dm3.chr3L	16,216,230 – 16,216,300	- - - - - - - -	10533	16,216,230 – 16,216,300	-	8	77	84.27	-2.01	0.65	0.802656
7653	dm3.chr3L	16,238,509 – 16,238,588	- - - - - - - -	10534	16,238,509 – 16,238,588	+	3	79	97.47	-1.77	0.94	0.854982
7654	dm3.chr3L	16,239,005 – 16,239,080	- - - - - - - -	10535	16,239,005 – 16,239,080	+	6	75	79.56	-1.53	0.70	0.853720
7655	dm3.chr3L	16,242,138 – 16,242,229	- - - - - - - -	10536	16,242,138 – 16,242,229	+	8	93	70.90	-1.65	0.44	0.875435
7655	dm3.chr3L	16,242,138 – 16,242,229	- - - - - - - -	10537	16,242,138 – 16,242,229	-	8	93	70.90	-1.22	0.47	0.699372
7656	dm3.chr3L	16,247,471 – 16,247,566	- - - - - - - -	10538	16,247,471 – 16,247,566	-	5	115	62.50	-2.67	0.21	0.851738
7657	dm3.chr3L	16,256,482 – 16,256,582	- - - intron="intron;ID=intron_FBgn0036586:1_FBgn0036586:2;Name=CG13070-in;Parent=FBtr0303380;parent_type=mRNA" - - - -	10539	16,256,482 – 16,256,582	+	3	108	59.62	-0.86	0.58	0.717780
7658	dm3.chr3L	16,285,775 – 16,285,889	- - - - - - - -	10540	16,285,775 – 16,285,889	-	6	119	68.17	-1.57	0.37	0.660905
7659	dm3.chr3L	16,292,187 – 16,292,288	- - - - - - - -	10541	16,292,187 – 16,292,288	+	3	115	62.91	-1.52	0.61	0.941713
7659	dm3.chr3L	16,292,187 – 16,292,288	- - - - - - - -	10542	16,292,187 – 16,292,288	-	3	115	62.91	-1.19	0.56	0.715388
7660	dm3.chr3L	16,292,459 – 16,292,518	- - - - - - - -	10543	16,292,459 – 16,292,518	-	11	64	84.42	-1.42	0.77	0.755064
7661	dm3.chr3L	16,307,485 – 16,307,603	- - - - - - - -	10544	16,307,485 – 16,307,578	-	12	118	61.33	-1.88	0.20	0.546517
7661	dm3.chr3L	16,307,485 – 16,307,603	- - - - - - - -	10545	16,307,510 – 16,307,603	+	12	119	64.81	-2.11	0.49	0.997957
7662	dm3.chr3L	16,321,388 – 16,321,444	- - - - - - - -	10546	16,321,388 – 16,321,444	-	7	57	71.36	-1.21	0.57	0.807788
7663	dm3.chr3L	16,323,234 – 16,323,343	- - - intron="intron;ID=intron_FBgn0053061:1_FBgn0053061:2;Name=CG33061-in;Parent=FBtr0113448;parent_type=mRNA" - - - -	10547	16,323,234 – 16,323,343	-	4	114	85.05	-2.82	0.47	0.630590
7664	dm3.chr3L	16,335,598 – 16,335,693	- - - intron="intron;ID=intron_FBgn0036612:2_FBgn0036612:3;Name=CG4998-in;Parent=FBtr0110866;parent_type=mRNA" - - - -	10548	16,335,598 – 16,335,693	-	6	95	76.98	-1.19	0.63	0.657684
7665	dm3.chr3L	16,359,076 – 16,359,194	- - - - - - - -	10549	16,359,076 – 16,359,194	+	12	118	66.03	-0.87	0.38	0.667320
7666	dm3.chr3L	16,374,056 – 16,374,162	- - - intron="intron;ID=intron_CG4753:6_CG4753:2;Name=CG4753-in;Parent=FBtr0075422;parent_type=mRNA" - - - -	10550	16,374,056 – 16,374,162	-	4	120	72.24	-1.80	0.52	0.765738
7667	dm3.chr3L	16,377,458 – 16,377,554	- - - - - - - -	10551	16,377,458 – 16,377,554	+	7	107	62.46	-1.72	0.39	0.939712
7668	dm3.chr3L	16,387,520 – 16,387,665	- - - - - - - -	10552	16,387,520 – 16,387,615	-	6	107	62.24	-0.71	0.50	0.878199
7668	dm3.chr3L	16,387,520 – 16,387,665	- - - - - - - -	10553	16,387,615 – 16,387,665	-	5	50	95.20	-2.98	0.96	0.995539
7669	dm3.chr3L	16,393,765 – 16,393,871	- - - - - - - -	10554	16,393,765 – 16,393,871	-	5	106	93.40	-1.15	0.93	0.571769
7670	dm3.chr3L	16,398,574 – 16,398,667	- - CDS="CDS;ID=CDS_CG4609:13_331;Name=fax-cds;Parent=FBtr0075412,FBtr0075413;parent_type=mRNA" - - - - -	10555	16,398,574 – 16,398,667	+	13	106	73.79	-1.06	0.71	0.956714
7671	dm3.chr3L	16,403,444 – 16,403,494	- - - - - - - -	10556	16,403,444 – 16,403,494	-	5	65	76.73	-1.88	0.53	0.521976
7672	dm3.chr3L	16,420,152 – 16,420,246	- - - intron="intron;ID=intron_FBgn0052159:5_FBgn0052159:4;Name=dsx-c73A-in;Parent=FBtr0075409;parent_type=mRNA" - - - -	10557	16,420,152 – 16,420,246	-	7	118	71.52	-2.63	0.27	0.690262
7673	dm3.chr3L	16,445,708 – 16,445,765	- - - - - - - -	10558	16,445,708 – 16,445,765	-	10	65	84.04	-1.69	0.65	0.599317
7674	dm3.chr3L	16,449,262 – 16,449,394	- - - - - - - -	10559	16,449,262 – 16,449,394	+	4	144	70.12	-1.22	0.58	0.625368
7675	dm3.chr3L	16,453,135 – 16,453,207	- - - - - - - -	10560	16,453,135 – 16,453,207	-	6	87	69.80	-1.46	0.52	0.856882
7676	dm3.chr3L	16,504,745 – 16,504,836	- - - intron="intron;ID=intron_FBgn0260387:19_FBgn0260387:18;Name=CG42513-in;Parent=FBtr0300653,FBtr0300654;parent_type=mRNA" - - - -	10561	16,504,745 – 16,504,836	-	12	108	68.40	-0.57	0.54	0.642855
7677	dm3.chr3L	16,508,075 – 16,508,171	- - - intron="intron;ID=intron_FBgn0260387:22_FBgn0260387:21;Name=CG42513-in;Parent=FBtr0300653,FBtr0300654;parent_type=mRNA" - - - -	10562	16,508,075 – 16,508,171	+	8	118	67.49	-1.21	0.51	0.813659
7678	dm3.chr3L	16,525,537 – 16,525,639	- - - - - - - -	10563	16,525,537 – 16,525,639	-	6	114	83.02	-2.10	0.70	0.913407
7679	dm3.chr3L	16,528,348 – 16,528,447	- - - - - - - -	10564	16,528,348 – 16,528,447	-	5	100	68.74	-1.51	0.58	0.939174
7680	dm3.chr3L	16,529,331 – 16,529,422	- - - - - - - -	10565	16,529,331 – 16,529,422	+	7	99	71.06	-1.68	0.41	0.625942
7681	dm3.chr3L	16,537,400 – 16,537,503	- - - - - - - -	10566	16,537,400 – 16,537,503	-	6	114	68.95	-1.27	0.45	0.601204
7682	dm3.chr3L	16,553,866 – 16,553,964	- - - - - - - -	10567	16,553,866 – 16,553,964	+	8	114	67.89	-0.98	0.45	0.515827
7683	dm3.chr3L	16,558,551 – 16,558,641	- - - intron="intron;ID=intron_FBgn0026061:5_FBgn0026061:4;Name=Mipp1-in;Parent=FBtr0075398,FBtr0075399;parent_type=mRNA" - - - -	10568	16,558,551 – 16,558,641	-	5	108	78.01	-2.17	0.53	0.781283
7684	dm3.chr3L	16,563,968 – 16,564,073	- - - - - - - -	10569	16,563,968 – 16,564,073	-	5	105	86.50	-2.34	0.78	0.947544
7685	dm3.chr3L	16,564,095 – 16,564,205	- - - - - - - -	10570	16,564,095 – 16,564,205	-	5	113	80.11	-1.97	0.69	0.916074
7686	dm3.chr3L	16,564,313 – 16,564,453	- - - - - - - -	10571	16,564,313 – 16,564,410	+	6	97	90.89	-2.43	0.63	0.579058
				10572	16,564,349 – 16,564,445	+	8	113	65.36	-1.35	0.54	0.962743
				10573	16,564,357 – 16,564,453	+	8	114	65.28	-1.57	0.39	0.831130
7687	dm3.chr3L	16,608,567 – 16,608,617	- - - - - - - -	10574	16,608,567 – 16,608,617	+	5	51	68.63	-0.76	0.68	0.876933
7688	dm3.chr3L	16,625,351 – 16,625,476	- - - intron="intron;ID=intron_FBgn0000017:9_FBgn0000017:8;Name=Abl-in;Parent=FBtr0112790;parent_type=mRNA" - - - -	10575	16,625,351 – 16,625,441	+	6	90	81.04	-2.70	0.69	0.993658
				10576	16,625,351 – 16,625,441	-	6	90	81.04	-2.04	0.77	0.977034
				10577	16,625,371 – 16,625,476	-	7	110	76.36	-0.89	0.64	0.559427
7689	dm3.chr3L	16,625,541 – 16,625,648	- - - intron="intron;ID=intron_FBgn0000017:9_FBgn0000017:8;Name=Abl-in;Parent=FBtr0112790;parent_type=mRNA" - - - -	10578	16,625,541 – 16,625,648	+	5	107	87.48	-1.51	0.92	0.897034
7690	dm3.chr3L	16,633,340 – 16,633,464	- - - intron="intron;ID=intron_FBgn0000017:9_FBgn0000017:8;Name=Abl-in;Parent=FBtr0112790;parent_type=mRNA" - - - -	10579	16,633,340 – 16,633,439	+	7	105	62.95	-2.01	0.33	0.905585
				10580	16,633,340 – 16,633,439	-	7	105	62.95	-1.89	0.34	0.884532
				10581	16,633,371 – 16,633,464	-	7	99	68.75	-1.52	0.42	0.645764
7691	dm3.chr3L	16,635,583 – 16,635,683	- - - intron="intron;ID=intron_FBgn0000017:9_FBgn0000017:8;Name=Abl-in;Parent=FBtr0112790;parent_type=mRNA" - - - -	10582	16,635,583 – 16,635,683	-	6	113	74.36	-1.25	0.68	0.834455
7692	dm3.chr3L	16,636,339 – 16,636,433	- - - intron="intron;ID=intron_FBgn0000017:9_FBgn0000017:8;Name=Abl-in;Parent=FBtr0112790;parent_type=mRNA" - - - -	10583	16,636,339 – 16,636,433	+	4	119	67.22	-1.19	0.52	0.500000
7693	dm3.chr3L	16,639,736 – 16,639,796	- - - intron="intron;ID=intron_FBgn0000017:9_FBgn0000017:8;Name=Abl-in;Parent=FBtr0112790;parent_type=mRNA" - - - -	10584	16,639,736 – 16,639,796	+	3	60	94.44	-4.04	0.81	0.996432
7693	dm3.chr3L	16,639,736 – 16,639,796		10585	16,639,736 – 16,639,796	-	3	60	94.44	-4.76	0.90	0.998789
7694	dm3.chr3L	16,642,446 – 16,642,573	- - - - - - - -	10586	16,642,446 – 16,642,546	+	4	100	88.50	-3.74	0.93	0.998710
				10587	16,642,446 – 16,642,546	-	4	100	88.50	-1.66	0.92	0.913581
				10588	16,642,481 – 16,642,573	+	4	92	89.13	-2.21	0.91	0.974941
				10589	16,642,481 – 16,642,573	-	4	92	89.13	-2.22	0.94	0.983590
7695	dm3.chr3L	16,643,566 – 16,643,686	- - CDS="CDS;ID=CDS_CG3971:5_306;Name=Baldspot-cds;Parent=FBtr0075355,FBtr0075356;parent_type=mRNA" - - - - -	10590	16,643,566 – 16,643,686	-	15	120	84.56	-2.17	0.63	0.906098
7696	dm3.chr3L	16,648,893 – 16,648,988	- - - intron="intron;ID=intron_CG3971:2_CG3971:3;Name=Baldspot-in;Parent=FBtr0075355,FBtr0075356;parent_type=mRNA" - - - -	10591	16,648,893 – 16,648,988	-	5	95	88.36	-1.23	0.92	0.763556
7697	dm3.chr3L	16,650,474 – 16,650,532	- - - intron="intron;ID=intron_CG3971:2_CG3971:3;Name=Baldspot-in;Parent=FBtr0075355,FBtr0075356;parent_type=mRNA" - - - -	10592	16,650,474 – 16,650,532	+	3	58	79.31	-0.77	0.97	0.760559
7698	dm3.chr3L	16,650,862 – 16,651,004	- - - intron="intron;ID=intron_CG3971:2_CG3971:3;Name=Baldspot-in;Parent=FBtr0075355,FBtr0075356;parent_type=mRNA" - - - -	10593	16,650,862 – 16,650,976	+	3	117	90.17	-4.16	0.90	0.998752
				10594	16,650,862 – 16,650,976	-	3	117	90.17	-2.80	0.85	0.982547
				10595	16,650,902 – 16,651,004	+	3	117	84.64	-1.81	0.75	0.609890
7699	dm3.chr3L	16,654,657 – 16,654,886	- - - - - - - -	10596	16,654,657 – 16,654,735	-	5	78	97.69	-1.83	1.01	0.968614
				10597	16,654,735 – 16,654,854	+	5	120	92.50	-1.34	0.93	0.742013
				10598	16,654,775 – 16,654,886	+	4	120	86.64	-1.21	0.94	0.813215
7700	dm3.chr3L	16,663,457 – 16,663,525	- - - - - - - -	10599	16,663,457 – 16,663,525	-	9	75	67.21	-2.68	0.22	0.855128
7701	dm3.chr3L	16,685,755 – 16,685,907	- - - intron="intron;ID=intron_FBgn0063485:9_FBgn0063485:8;Name=Lasp-in;Parent=FBtr0100145,FBtr0075350,FBtr0306151,FBtr0306152;parent_type=mRNA" - - - -	10600	16,685,755 – 16,685,907	-	10	160	72.60	-0.78	0.52	0.562817
7702	dm3.chr3L	16,691,257 – 16,691,398	- - - intron="intron;ID=intron_FBgn0063485:10_FBgn0063485:9;Name=Lasp-in;Parent=FBtr0100145,FBtr0075350,FBtr0306151,FBtr0306152;parent_type=mRNA" - - - -	10601	16,691,257 – 16,691,365	+	6	112	78.81	-1.72	0.69	0.900417
				10602	16,691,257 – 16,691,365	-	6	112	78.81	-2.10	0.61	0.931600
				10603	16,691,296 – 16,691,398	+	6	106	77.50	-2.30	0.62	0.973173
7703	dm3.chr3L	16,692,113 – 16,692,215	- - - intron="intron;ID=intron_FBgn0063485:10_FBgn0063485:9;Name=Lasp-in;Parent=FBtr0100145,FBtr0075350,FBtr0306151,FBtr0306152;parent_type=mRNA" - - - -	10604	16,692,113 – 16,692,215	+	6	119	71.44	-1.21	0.56	0.711897
7704	dm3.chr3L	16,693,379 – 16,693,483	- - - intron="intron;ID=intron_FBgn0063485:10_FBgn0063485:9;Name=Lasp-in;Parent=FBtr0100145,FBtr0075350,FBtr0306151,FBtr0306152;parent_type=mRNA" - - - -	10605	16,693,379 – 16,693,483	+	4	109	89.29	-1.98	0.81	0.801746
7705	dm3.chr3L	16,698,314 – 16,698,520	- - CDS="CDS;ID=CDS_FBgn0036654:2_485;Name=CG9692-cds;Parent=FBtr0075317;parent_type=mRNA" - - - - -	10606	16,698,314 – 16,698,429	-	6	118	71.32	-2.17	0.44	0.959747
				10607	16,698,349 – 16,698,469	+	5	120	86.92	-2.31	0.64	0.708199
				10608	16,698,389 – 16,698,492	+	5	120	78.50	-2.84	0.60	0.986603
				10609	16,698,389 – 16,698,492	-	5	120	78.50	-1.68	0.65	0.708816
				10610	16,698,421 – 16,698,520	+	5	120	76.52	-1.79	0.56	0.620460
7706	dm3.chr3L	16,699,428 – 16,699,487	- - - - - - - -	10611	16,699,428 – 16,699,487	+	5	59	87.12	-1.32	0.93	0.848651
7707	dm3.chr3L	16,700,784 – 16,700,886	- - - - - - - -	10612	16,700,784 – 16,700,886	-	8	111	75.56	-0.95	0.67	0.749993
7708	dm3.chr3L	16,702,387 – 16,702,480	- - - - - - - -	10613	16,702,387 – 16,702,480	-	5	100	90.40	-1.56	0.84	0.595923
7709	dm3.chr3L	16,732,361 – 16,732,453	- - - - - - - -	10614	16,732,361 – 16,732,453	+	6	94	74.01	-1.26	0.51	0.519445
7710	dm3.chr3L	16,747,290 – 16,747,389	- - - - - - - -	10615	16,747,290 – 16,747,389	-	6	100	64.00	-1.71	0.30	0.597240
7711	dm3.chr3L	16,756,623 – 16,756,698	- - - - - - - -	10616	16,756,623 – 16,756,698	-	11	84	66.88	-1.46	0.36	0.762567
7712	dm3.chr3L	16,761,190 – 16,761,283	- - - intron="intron;ID=intron_FBgn0004108:1_FBgn0004108:3;Name=Nrt-in;Parent=FBtr0075322,FBtr0304018;parent_type=mRNA" - - - -	10617	16,761,190 – 16,761,283	-	6	96	82.11	-2.46	0.48	0.769721
7713	dm3.chr3L	16,763,707 – 16,763,802	- - - intron="intron;ID=intron_FBgn0004108:1_FBgn0004108:3;Name=Nrt-in;Parent=FBtr0075322,FBtr0304018;parent_type=mRNA" - - - -	10618	16,763,707 – 16,763,802	-	5	95	94.32	-1.15	0.93	0.536796
7714	dm3.chr3L	16,803,527 – 16,803,605	- - CDS="CDS;ID=CDS_FBgn0036665:2_481;Name=CG13024-cds;Parent=FBtr0273320,FBtr0305913;parent_type=mRNA" - - - - -	10619	16,803,527 – 16,803,605	-	14	86	75.65	-1.57	0.60	0.928740
7715	dm3.chr3L	16,803,755 – 16,803,854	- - CDS="CDS;ID=CDS_FBgn0036665:3_481;Name=CG13024-cds;Parent=FBtr0273320,FBtr0305913;parent_type=mRNA" - - - - -	10620	16,803,755 – 16,803,854	-	8	105	63.94	-0.93	0.47	0.858609
7716	dm3.chr3L	16,805,653 – 16,805,780	- - - - - - - -	10621	16,805,653 – 16,805,763	-	4	111	94.59	-1.46	0.94	0.784834
7716	dm3.chr3L	16,805,653 – 16,805,780	- - - - - - - -	10622	16,805,685 – 16,805,780	-	4	96	95.13	-1.82	0.90	0.818957
7717	dm3.chr3L	16,846,797 – 16,846,893	- - - intron="intron;ID=intron_CG9668:1_CG9668:2;Name=Rh4-in;Parent=FBtr0075338;parent_type=mRNA" - - - -	10623	16,846,797 – 16,846,893	-	7	113	61.03	-1.32	0.43	0.939371
7718	dm3.chr3L	16,847,473 – 16,847,576	- - - intron="intron;ID=intron_CG9668:1_CG9668:2;Name=Rh4-in;Parent=FBtr0075338;parent_type=mRNA" - - - -	10624	16,847,473 – 16,847,576	+	4	103	77.89	-3.10	0.84	0.998330
7718	dm3.chr3L	16,847,473 – 16,847,576		10625	16,847,473 – 16,847,576	-	4	103	77.89	-2.02	0.78	0.972696
7719	dm3.chr3L	16,851,418 – 16,851,484	- - - - - - - -	10626	16,851,418 – 16,851,484	+	5	66	98.79	-2.80	0.98	0.992750
7719	dm3.chr3L	16,851,418 – 16,851,484	- - - - - - - -	10627	16,851,418 – 16,851,484	-	5	66	98.79	-1.00	1.01	0.725652
7720	dm3.chr3L	16,868,441 – 16,868,540	- - - intron="intron;ID=intron_FBgn0261565:4_FBgn0261565:5;Name=Lmpt-in;Parent=FBtr0302781;parent_type=mRNA" - - - -	10628	16,868,441 – 16,868,540	-	4	101	63.27	-1.12	0.52	0.719257
7721	dm3.chr3L	16,868,744 – 16,868,830	- - - intron="intron;ID=intron_FBgn0261565:4_FBgn0261565:5;Name=Lmpt-in;Parent=FBtr0302781;parent_type=mRNA" - - - -	10629	16,868,744 – 16,868,830	-	11	98	54.71	-3.20	0.11	0.993555
7722	dm3.chr3L	16,869,307 – 16,869,419	- - - intron="intron;ID=intron_FBgn0261565:4_FBgn0261565:5;Name=Lmpt-in;Parent=FBtr0302781;parent_type=mRNA" - - - -	10630	16,869,307 – 16,869,419	+	6	116	82.14	-1.21	0.87	0.838036
7723	dm3.chr3L	16,872,966 – 16,873,018	- - - intron="intron;ID=intron_FBgn0261565:4_FBgn0261565:5;Name=Lmpt-in;Parent=FBtr0302781;parent_type=mRNA" - - - -	10631	16,872,966 – 16,873,018	-	3	52	67.95	-1.66	0.61	0.884331
7724	dm3.chr3L	16,882,088 – 16,882,182	- - - intron="intron;ID=intron_FBgn0261565:5_FBgn0261565:10;Name=Lmpt-in;Parent=FBtr0302779,FBtr0302781;parent_type=mRNA" - - - -	10632	16,882,088 – 16,882,182	-	6	118	65.09	-1.42	0.34	0.570874
7725	dm3.chr3L	16,890,820 – 16,890,942	- - - intron="intron;ID=intron_FBgn0261565:11_FBgn0261565:17;Name=Lmpt-in;Parent=FBtr0302779,FBtr0302780,FBtr0302781,FBtr0302782;parent_type=mRNA" - - - -	10633	16,890,820 – 16,890,921	+	8	108	69.54	-1.11	0.42	0.541908
7725	dm3.chr3L	16,890,820 – 16,890,942		10634	16,890,851 – 16,890,942	+	7	95	83.15	-1.34	0.74	0.650438
7726	dm3.chr3L	16,895,404 – 16,895,502	- - - intron="intron;ID=intron_FBgn0261565:13_FBgn0261565:14;Name=Lmpt-in;Parent=FBtr0302786;parent_type=mRNA" - - - -	10635	16,895,404 – 16,895,502	+	10	111	65.00	-1.57	0.41	0.963062
7726	dm3.chr3L	16,895,404 – 16,895,502		10636	16,895,404 – 16,895,502	-	10	111	65.00	-1.48	0.36	0.861879
7727	dm3.chr3L	16,909,170 – 16,909,220	- - - intron="intron;ID=intron_FBgn0261565:19_FBgn0261565:24;Name=Lmpt-in;Parent=FBtr0302778,FBtr0302779,FBtr0302780,FBtr0302781,FBtr0302782,FBtr0302783,FBtr0302785;parent_type=mRNA" - - - -	10637	16,909,170 – 16,909,220	-	6	50	94.00	-2.55	0.89	0.977654
7728	dm3.chr3L	16,914,255 – 16,914,354	- - CDS="CDS;ID=CDS_FBgn0261565:25_335;Name=Lmpt-cds;Parent=FBtr0302780,FBtr0302783;parent_type=mRNA" - - - - -	10638	16,914,255 – 16,914,354	-	15	112	70.73	-0.96	0.42	0.606029
7729	dm3.chr3L	16,922,992 – 16,923,111	- - - intron="intron;ID=intron_FBgn0036678:7_FBgn0036678:3;Name=CG11905-in;Parent=FBtr0305577;parent_type=mRNA" - - - -	10639	16,922,992 – 16,923,111	+	6	131	77.37	-1.62	0.54	0.568361
7730	dm3.chr3L	16,923,753 – 16,923,843	- - CDS="CDS;ID=CDS_FBgn0036678:4_477;Name=CG11905-cds;Parent=FBtr0075301,FBtr0075304,FBtr0113173;parent_type=mRNA" intron="intron;ID=intron_FBgn0036678:7_FBgn0036678:3;Name=CG11905-in;Parent=FBtr0305577;parent_type=mRNA" - - - -	10640	16,923,753 – 16,923,843	-	7	96	70.69	-1.54	0.45	0.810266
7731	dm3.chr3L	16,952,256 – 16,952,348	- - - - - - - -	10641	16,952,256 – 16,952,348	+	11	107	66.96	-0.92	0.57	0.950611
7732	dm3.chr3L	16,959,156 – 16,959,251	- - CDS="CDS;ID=CDS_FBgn0010352:17_398;Name=Nc73EF-cds;Parent=FBtr0112860;parent_type=mRNA" - - - - -	10642	16,959,156 – 16,959,251	+	8	104	72.34	-0.70	0.66	0.611196
7733	dm3.chr3L	16,964,869 – 16,964,963	- - - intron="intron;ID=intron_FBgn0261547:1_FBgn0261547:3;Name=Exn-in;Parent=FBtr0302651;parent_type=mRNA" - - - -	10643	16,964,869 – 16,964,963	+	5	101	92.87	-1.51	0.90	0.718033
7733	dm3.chr3L	16,964,869 – 16,964,963		10644	16,964,869 – 16,964,963	-	5	101	92.87	-1.18	0.94	0.657183
7734	dm3.chr3L	16,978,719 – 16,978,822	- - - intron="intron;ID=intron_FBgn0261547:4_FBgn0261547:10;Name=Exn-in;Parent=FBtr0302650,FBtr0302651;parent_type=mRNA" - - - -	10645	16,978,719 – 16,978,822	+	5	105	82.85	-1.95	0.58	0.524527
7735	dm3.chr3L	16,993,698 – 16,993,818	- - - intron="intron;ID=intron_CG3764:2_CG3764:3;Name=CG3764-in;Parent=FBtr0075297;parent_type=mRNA" - - - -	10646	16,993,698 – 16,993,818	+	5	120	92.90	-1.27	0.92	0.632878
7736	dm3.chr3L	16,993,964 – 16,994,079	- - - intron="intron;ID=intron_CG3764:2_CG3764:3;Name=CG3764-in;Parent=FBtr0075297;parent_type=mRNA" - - - -	10647	16,993,964 – 16,994,079	+	5	120	80.77	-1.62	0.71	0.749990
7737	dm3.chr3L	16,999,433 – 16,999,535	- - - - - - - -	10648	16,999,433 – 16,999,535	-	5	117	83.62	-1.76	0.69	0.679027
7738	dm3.chr3L	17,000,644 – 17,000,750	- - - - - - - -	10649	17,000,644 – 17,000,750	-	6	112	71.54	-1.69	0.57	0.962592
7739	dm3.chr3L	17,002,719 – 17,002,810	- - - - - - - -	10650	17,002,719 – 17,002,810	-	5	91	73.27	-1.11	0.66	0.736969
7740	dm3.chr3L	17,010,213 – 17,010,373	- - CDS="CDS;ID=CDS_CG7728:1_306;Name=CG7728-cds;Parent=FBtr0075274;parent_type=mRNA" - - - - -	10651	17,010,213 – 17,010,333	+	15	120	83.45	-2.29	0.60	0.946562
7740	dm3.chr3L	17,010,213 – 17,010,373		10652	17,010,253 – 17,010,373	+	14	120	83.40	-1.89	0.55	0.656521
7741	dm3.chr3L	17,036,966 – 17,037,067	- - - intron="intron;ID=intron_FBgn0036695:1_FBgn0036695:2;Name=Papst2-in;Parent=FBtr0075279;parent_type=mRNA" - - - -	10653	17,036,966 – 17,037,067	+	10	106	63.94	-0.35	0.49	0.633148
7742	dm3.chr3L	17,038,678 – 17,038,749	- - - - - - - -	10654	17,038,678 – 17,038,749	+	5	71	86.72	-2.12	0.78	0.904780
7743	dm3.chr3L	17,039,592 – 17,039,690	- - CDS="CDS;ID=CDS_FBgn0010424:4_306;Name=TpnC73F-cds;Parent=FBtr0089586;parent_type=mRNA" - - - - -	10655	17,039,592 – 17,039,690	+	11	113	75.47	-1.39	0.57	0.866081
7744	dm3.chr3L	17,047,201 – 17,047,298	- - - intron="intron;ID=intron_CG7725:7_CG7725:8;Name=rogdi-in;Parent=FBtr0075282,FBtr0075283;parent_type=mRNA" - - - -	10656	17,047,201 – 17,047,298	+	10	116	72.29	-1.11	0.49	0.535624
7745	dm3.chr3L	17,052,767 – 17,052,859	- - - - - - - -	10657	17,052,767 – 17,052,859	+	4	95	90.88	-2.01	0.75	0.535373
7745	dm3.chr3L	17,052,767 – 17,052,859	- - - - - - - -	10658	17,052,767 – 17,052,859	-	4	95	90.88	-1.92	0.89	0.904332
7746	dm3.chr3L	17,054,660 – 17,054,783	- - - - - - - -	10659	17,054,660 – 17,054,755	+	10	111	69.35	-1.75	0.69	0.996727
				10660	17,054,660 – 17,054,755	-	10	111	69.35	-1.24	0.70	0.985493
				10661	17,054,688 – 17,054,783	+	11	113	62.60	-2.04	0.44	0.996210
				10662	17,054,688 – 17,054,783	-	11	113	62.60	-0.85	0.45	0.792339
7747	dm3.chr3L	17,062,400 – 17,062,505	- - - intron="intron;ID=intron_FBgn0052169:7_FBgn0052169:5;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113428;parent_type=mRNA" - - - -	10663	17,062,400 – 17,062,505	-	6	105	82.98	-1.98	0.58	0.682374
7748	dm3.chr3L	17,062,539 – 17,062,594	- - - intron="intron;ID=intron_FBgn0052169:7_FBgn0052169:5;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113428;parent_type=mRNA" - - - -	10664	17,062,539 – 17,062,594	+	4	55	81.82	-1.74	0.75	0.817155
7749	dm3.chr3L	17,065,907 – 17,066,014	- - - intron="intron;ID=intron_FBgn0052169:7_FBgn0052169:5;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113428;parent_type=mRNA" - - - -	10665	17,065,907 – 17,066,014	-	8	110	74.36	-2.94	0.29	0.887750
7750	dm3.chr3L	17,067,288 – 17,067,402	- - CDS="CDS;ID=CDS_FBgn0052169:7_322;Name=Rbp6-cds;Parent=FBtr0290066;parent_type=mRNA" - - - - -	10666	17,067,288 – 17,067,402	+	14	123	74.49	-1.58	0.56	0.960062
7751	dm3.chr3L	17,067,737 – 17,067,837	- - - intron="intron;ID=intron_FBgn0052169:10_FBgn0052169:8;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113428,FBtr0290066;parent_type=mRNA" - - - -	10667	17,067,737 – 17,067,837	+	6	108	84.52	-2.19	0.57	0.602654
7751	dm3.chr3L	17,067,737 – 17,067,837		10668	17,067,737 – 17,067,837	-	6	108	84.52	-2.24	0.62	0.793060
7752	dm3.chr3L	17,070,044 – 17,070,134	- - CDS="CDS;ID=CDS_FBgn0052169:9_285;Name=Rbp6-cds;Parent=FBtr0113427;parent_type=mRNA" intron="intron;ID=intron_FBgn0052169:10_FBgn0052169:8;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113428,FBtr0290066;parent_type=mRNA" - - - -	10669	17,070,044 – 17,070,134	+	9	111	70.44	-1.95	0.51	0.976292
7753	dm3.chr3L	17,087,843 – 17,087,939	- - - intron="intron;ID=intron_FBgn0052169:13_FBgn0052169:12;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427,FBtr0113428,FBtr0290066;parent_type=mRNA" - - - -	10670	17,087,843 – 17,087,939	+	10	117	82.77	-1.66	0.69	0.708914
7754	dm3.chr3L	17,088,009 – 17,088,064	- - - intron="intron;ID=intron_FBgn0052169:13_FBgn0052169:12;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427,FBtr0113428,FBtr0290066;parent_type=mRNA" - - - -	10671	17,088,009 – 17,088,064	+	5	55	92.17	-2.34	0.79	0.874032
7755	dm3.chr3L	17,099,515 – 17,099,606	- - - intron="intron;ID=intron_FBgn0052169:13_FBgn0052169:12;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427,FBtr0113428,FBtr0290066;parent_type=mRNA" - - - -	10672	17,099,515 – 17,099,606	+	8	100	86.44	-2.30	0.60	0.691206
7756	dm3.chr3L	17,100,552 – 17,100,653	- - - intron="intron;ID=intron_FBgn0052169:13_FBgn0052169:12;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427,FBtr0113428,FBtr0290066;parent_type=mRNA" - - - -	10673	17,100,552 – 17,100,653	+	8	117	79.34	-2.24	0.54	0.931820
7756	dm3.chr3L	17,100,552 – 17,100,653		10674	17,100,552 – 17,100,653	-	8	117	79.34	-1.57	0.56	0.589417
7757	dm3.chr3L	17,110,762 – 17,110,855	- - - intron="intron;ID=intron_FBgn0052169:13_FBgn0052169:12;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427,FBtr0113428,FBtr0290066;parent_type=mRNA" - - - -	10675	17,110,762 – 17,110,855	-	9	111	72.40	-0.82	0.65	0.830024
7758	dm3.chr3L	17,118,312 – 17,118,378	- - - intron="intron;ID=intron_FBgn0052169:13_FBgn0052169:12;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427,FBtr0113428,FBtr0290066;parent_type=mRNA" - - - -	10676	17,118,312 – 17,118,378	+	4	66	95.45	-0.90	0.98	0.567536
7759	dm3.chr3L	17,120,001 – 17,120,094	- - - intron="intron;ID=intron_FBgn0052169:13_FBgn0052169:12;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427,FBtr0113428,FBtr0290066;parent_type=mRNA" - - - -	10677	17,120,001 – 17,120,094	+	9	110	75.43	-1.56	0.52	0.720828
7760	dm3.chr3L	17,126,307 – 17,126,376	- - - intron="intron;ID=intron_FBgn0052169:14_FBgn0052169:13;Name=Rbp6-in;Parent=FBtr0113428,FBtr0290066;parent_type=mRNA" - - - -	10678	17,126,307 – 17,126,376	-	12	69	85.96	-1.17	0.77	0.527576
7761	dm3.chr3L	17,135,025 – 17,135,120	- - - intron="intron;ID=intron_FBgn0052169:14_FBgn0052169:13;Name=Rbp6-in;Parent=FBtr0113428,FBtr0290066;parent_type=mRNA" - - - -	10679	17,135,025 – 17,135,120	+	4	104	77.55	-1.19	0.80	0.746179
7762	dm3.chr3L	17,140,329 – 17,140,424	- - - - - - - -	10680	17,140,329 – 17,140,424	+	7	105	94.94	-1.49	0.94	0.809944
7763	dm3.chr3L	17,149,294 – 17,149,385	- - - - - - - -	10681	17,149,294 – 17,149,385	+	3	91	87.08	-1.07	0.90	0.500000
7764	dm3.chr3L	17,161,474 – 17,161,571	- - - intron="intron;ID=intron_FBgn0052169:17_FBgn0052169:16;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10682	17,161,474 – 17,161,571	-	5	97	92.28	-0.64	1.01	0.624274
7765	dm3.chr3L	17,166,438 – 17,166,537	- - - intron="intron;ID=intron_FBgn0052169:17_FBgn0052169:16;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10683	17,166,438 – 17,166,537	+	6	101	79.42	-2.02	0.68	0.958265
7765	dm3.chr3L	17,166,438 – 17,166,537		10684	17,166,438 – 17,166,537	-	6	101	79.42	-1.61	0.65	0.798444
7766	dm3.chr3L	17,169,532 – 17,169,631	- - - intron="intron;ID=intron_FBgn0052169:17_FBgn0052169:16;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10685	17,169,532 – 17,169,631	-	10	110	86.95	-2.01	0.60	0.541829
7767	dm3.chr3L	17,170,420 – 17,170,518	- - - intron="intron;ID=intron_FBgn0052169:17_FBgn0052169:16;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10686	17,170,420 – 17,170,518	-	6	107	90.43	-1.97	0.88	0.927420
7768	dm3.chr3L	17,170,617 – 17,170,732	- - - intron="intron;ID=intron_FBgn0052169:17_FBgn0052169:16;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10687	17,170,617 – 17,170,732	+	12	120	97.37	-3.41	0.97	0.997459
7768	dm3.chr3L	17,170,617 – 17,170,732		10688	17,170,617 – 17,170,732	-	12	120	97.37	-0.92	0.98	0.549389
7769	dm3.chr3L	17,176,162 – 17,176,256	- - - intron="intron;ID=intron_FBgn0052169:18_FBgn0052169:17;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10689	17,176,162 – 17,176,256	-	8	102	71.16	-1.48	0.56	0.899110
7770	dm3.chr3L	17,176,836 – 17,176,983	- - - intron="intron;ID=intron_FBgn0052169:18_FBgn0052169:17;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10690	17,176,836 – 17,176,946	+	6	110	89.14	-2.17	0.79	0.911458
7770	dm3.chr3L	17,176,836 – 17,176,983		10691	17,176,872 – 17,176,983	+	7	114	78.54	-1.54	0.60	0.760639
7771	dm3.chr3L	17,185,968 – 17,186,060	- - - intron="intron;ID=intron_FBgn0052169:18_FBgn0052169:17;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10692	17,185,968 – 17,186,060	-	6	94	88.42	-2.13	0.79	0.908577
7772	dm3.chr3L	17,190,736 – 17,190,829	- - - intron="intron;ID=intron_FBgn0052169:18_FBgn0052169:17;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10693	17,190,736 – 17,190,829	-	4	103	85.20	-2.15	0.82	0.943941
7773	dm3.chr3L	17,212,284 – 17,212,420	- - - intron="intron;ID=intron_FBgn0052169:18_FBgn0052169:17;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10694	17,212,284 – 17,212,420	-	11	158	72.18	-1.15	0.49	0.651090
7774	dm3.chr3L	17,219,157 – 17,219,251	- - - intron="intron;ID=intron_FBgn0052169:19_FBgn0052169:18;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10695	17,219,157 – 17,219,251	-	8	99	79.46	-2.39	0.49	0.931514
7775	dm3.chr3L	17,221,577 – 17,221,685	- - - intron="intron;ID=intron_FBgn0052169:19_FBgn0052169:18;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10696	17,221,577 – 17,221,685	-	8	115	70.00	-1.12	0.52	0.769184
7776	dm3.chr3L	17,223,836 – 17,223,890	- - - intron="intron;ID=intron_FBgn0052169:19_FBgn0052169:18;Name=Rbp6-in;Parent=FBtr0075285,FBtr0113427;parent_type=mRNA" - - - -	10697	17,223,836 – 17,223,890	+	7	58	88.60	-2.21	0.70	0.795924
7777	dm3.chr3L	17,234,189 – 17,234,281	- - - intron="intron;ID=intron_CG6512:6_CG6512:3;Name=CG6512-in;Parent=FBtr0075252;parent_type=mRNA" - - - -	10698	17,234,189 – 17,234,281	-	4	98	68.75	-2.29	0.50	0.974934
7778	dm3.chr3L	17,234,643 – 17,234,742	- - - intron="intron;ID=intron_CG6512:5_CG6512:6;Name=CG6512-in;Parent=FBtr0075252;parent_type=mRNA" - - - -	10699	17,234,643 – 17,234,742	-	14	118	68.21	-2.15	0.36	0.957809
7779	dm3.chr3L	17,247,411 – 17,247,507	- - - - - - - -	10700	17,247,411 – 17,247,507	+	6	96	74.31	-1.24	0.57	0.759044
7779	dm3.chr3L	17,247,411 – 17,247,507	- - - - - - - -	10701	17,247,411 – 17,247,507	-	6	96	74.31	-2.02	0.81	0.995617
7780	dm3.chr3L	17,248,684 – 17,248,735	- - - - - - - -	10702	17,248,684 – 17,248,735	+	4	53	91.99	-2.06	0.87	0.899796
7780	dm3.chr3L	17,248,684 – 17,248,735	- - - - - - - -	10703	17,248,684 – 17,248,735	-	4	53	91.99	-2.42	0.93	0.983816
7781	dm3.chr3L	17,252,136 – 17,252,254	- - - - - - - -	10704	17,252,136 – 17,252,254	+	12	120	94.12	-1.71	0.91	0.861537
7781	dm3.chr3L	17,252,136 – 17,252,254	- - - - - - - -	10705	17,252,136 – 17,252,254	-	12	120	94.12	-1.30	0.93	0.711181
7782	dm3.chr3L	17,262,846 – 17,262,940	- - - - - - - -	10706	17,262,846 – 17,262,940	+	12	105	68.13	-1.17	0.54	0.970643
7783	dm3.chr3L	17,265,932 – 17,266,025	- - - - - - - -	10707	17,265,932 – 17,266,025	+	11	111	75.90	-1.69	0.47	0.612507
7784	dm3.chr3L	17,293,310 – 17,293,443	- - - - - - - -	10708	17,293,310 – 17,293,415	+	12	119	80.91	-1.70	0.69	0.892145
7784	dm3.chr3L	17,293,310 – 17,293,443	- - - - - - - -	10709	17,293,348 – 17,293,443	+	9	119	65.89	-1.26	0.74	0.989312
7785	dm3.chr3L	17,303,598 – 17,303,694	- - - - - - - -	10710	17,303,598 – 17,303,694	-	8	102	77.80	-1.06	0.70	0.649024
7786	dm3.chr3L	17,304,630 – 17,304,721	- - - - - - - -	10711	17,304,630 – 17,304,721	-	9	104	68.64	-1.83	0.31	0.630064
7787	dm3.chr3L	17,306,616 – 17,306,736	- - - - - - - -	10712	17,306,616 – 17,306,736	-	10	120	87.94	-1.47	0.87	0.832337
7788	dm3.chr3L	17,308,080 – 17,308,218	FBnoncoding="pre_miRNA;ID=FBtr0304210;Name=mir-219-RM;Parent=FBgn0262376;Alias=CR42897-RM;Dbxref=FlyBase_Annotation_IDs:CR42897-RM,miRBase:MI0000358" - - - "Rfam_10.0=RF00251;mir-219;AANI01017339.1/197098-197168\|9.2e-24" - - "mirBase_v16=dme-mir-219\|2.4e-52"	10713	17,308,080 – 17,308,218	+	13	159	81.10	-3.65	0.65	0.999324
7789	dm3.chr3L	17,317,924 – 17,318,038	- - CDS="CDS;ID=CDS_FBgn0036708:1_408;Name=CG13725-cds;Parent=FBtr0075248;parent_type=mRNA" - - - - -	10714	17,317,924 – 17,318,038	-	8	115	66.75	-1.76	0.27	0.606921
7790	dm3.chr3L	17,326,829 – 17,326,932	- - - - - - - -	10715	17,326,829 – 17,326,932	+	12	107	89.02	-2.31	0.60	0.582112
7791	dm3.chr3L	17,329,331 – 17,329,421	- - - - - - - -	10716	17,329,331 – 17,329,421	+	12	109	82.36	-1.61	0.71	0.835312
7792	dm3.chr3L	17,332,977 – 17,333,104	FBnoncoding="tRNA;ID=FBtr0075244;Name=tRNA:CR32173-RA;Parent=FBgn0052173;Alias=CR32173-RA;Dbxref=FlyBase_Annotation_IDs:CR32173-RA;score_text=Weakly" tRNAscann="Pro_chr3L_trna35" - - "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|3.6e-29" - - -	10717	17,332,977 – 17,333,067	+	9	93	72.92	-0.90	0.77	0.935715
				10718	17,332,977 – 17,333,067	-	9	93	72.92	-0.89	0.76	0.930352
				10719	17,333,010 – 17,333,104	+	11	110	74.46	-1.71	0.74	0.990371
				10720	17,333,010 – 17,333,104	-	11	110	74.46	-0.54	0.74	0.684771
7793	dm3.chr3L	17,340,270 – 17,340,357	- - - intron="intron;ID=intron_CG6456:1_CG6456:2;Name=Mip-in;Parent=FBtr0075241;parent_type=mRNA" - - - -	10721	17,340,270 – 17,340,357	+	7	100	66.86	-1.53	0.35	0.608411
7794	dm3.chr3L	17,381,973 – 17,382,076	- - - intron="intron;ID=intron_CG13731:4_CG13731:5;Name=CG13731-in;Parent=FBtr0075237;parent_type=mRNA" - - - -	10722	17,381,973 – 17,382,076	+	12	119	86.52	-2.93	0.56	0.947914
7794	dm3.chr3L	17,381,973 – 17,382,076		10723	17,381,973 – 17,382,076	-	12	119	86.52	-2.31	0.70	0.928673
7795	dm3.chr3L	17,389,227 – 17,389,286	- - - - - - - -	10724	17,389,227 – 17,389,286	+	5	59	93.31	-0.59	1.02	0.614330
7796	dm3.chr3L	17,402,779 – 17,402,869	- - CDS="CDS;ID=CDS_CG3897:2_279;Name=blot-cds;Parent=FBtr0075232,FBtr0075233;parent_type=mRNA" - - - - -	10725	17,402,779 – 17,402,869	-	8	102	62.15	-0.96	0.51	0.948648
7797	dm3.chr3L	17,406,131 – 17,406,229	- - - intron="intron;ID=intron_CG3897:7_CG3897:2;Name=blot-in;Parent=FBtr0075233;parent_type=mRNA" - - - -	10726	17,406,131 – 17,406,229	+	6	113	62.32	-1.47	0.44	0.913612
7798	dm3.chr3L	17,417,224 – 17,417,325	- - - - - - - -	10727	17,417,224 – 17,417,325	+	13	106	67.99	-0.36	0.49	0.551835
7799	dm3.chr3L	17,418,205 – 17,418,342	- - - - - - - -	10728	17,418,205 – 17,418,342	-	6	143	81.73	-1.81	0.63	0.742981
7800	dm3.chr3L	17,418,965 – 17,419,056	- - - - - - - -	10729	17,418,965 – 17,419,056	+	11	107	58.28	-0.54	0.58	0.972083
7801	dm3.chr3L	17,436,128 – 17,436,197	- - - intron="intron;ID=intron_CG18265:1_CG18265:2;Name=CG18265-in;Parent=FBtr0075219;parent_type=mRNA" - - - -	10730	17,436,128 – 17,436,197	+	11	74	75.52	-1.72	0.40	0.549745
7802	dm3.chr3L	17,439,536 – 17,439,626	- - - intron="intron;ID=intron_CG18265:1_CG18265:2;Name=CG18265-in;Parent=FBtr0075219;parent_type=mRNA" - - - -	10731	17,439,536 – 17,439,626	-	6	94	94.55	-3.06	0.80	0.975782
7803	dm3.chr3L	17,440,204 – 17,440,304	- - - intron="intron;ID=intron_CG18265:1_CG18265:2;Name=CG18265-in;Parent=FBtr0075219;parent_type=mRNA" - - - -	10732	17,440,204 – 17,440,304	-	5	104	76.49	-1.03	0.67	0.531950
7804	dm3.chr3L	17,442,457 – 17,442,554	- - - - - - - -	10733	17,442,457 – 17,442,554	-	13	108	74.72	-0.74	0.64	0.755092
7805	dm3.chr3L	17,446,551 – 17,446,689	- - - - - - - -	10734	17,446,551 – 17,446,689	+	5	140	76.53	-3.68	0.76	0.999530
7805	dm3.chr3L	17,446,551 – 17,446,689	- - - - - - - -	10735	17,446,551 – 17,446,689	-	5	140	76.53	-1.74	0.60	0.849302
7806	dm3.chr3L	17,460,290 – 17,460,397	- - - - - - - -	10736	17,460,290 – 17,460,397	-	7	119	65.91	-1.56	0.39	0.724110
7807	dm3.chr3L	17,471,824 – 17,471,891	- - CDS="CDS;ID=CDS_FBgn0036729:1_402;Name=CG13733-cds;Parent=FBtr0075225;parent_type=mRNA" - - - - -	10737	17,471,824 – 17,471,891	+	6	67	85.17	-2.68	0.87	0.994630
7807	dm3.chr3L	17,471,824 – 17,471,891		10738	17,471,824 – 17,471,891	-	6	67	85.17	-2.35	0.71	0.947615
7808	dm3.chr3L	17,473,284 – 17,473,396	- - - - - - - -	10739	17,473,284 – 17,473,396	+	5	120	87.33	-4.61	0.72	0.999215
7808	dm3.chr3L	17,473,284 – 17,473,396	- - - - - - - -	10740	17,473,284 – 17,473,396	-	5	120	87.33	-6.10	0.75	0.999402
7809	dm3.chr3L	17,484,374 – 17,484,515	- - - intron="intron;ID=intron_FBgn0036732:3_FBgn0036732:4;Name=Oatp74D-in;Parent=FBtr0075173,FBtr0302041;parent_type=mRNA" - - - -	10741	17,484,374 – 17,484,484	-	3	115	80.00	-1.43	0.78	0.578905
7809	dm3.chr3L	17,484,374 – 17,484,515		10742	17,484,404 – 17,484,515	-	3	111	85.53	-1.79	0.92	0.939104
7810	dm3.chr3L	17,492,622 – 17,492,720	- - - intron="intron;ID=intron_FBgn0036732:3_FBgn0036732:4;Name=Oatp74D-in;Parent=FBtr0075173,FBtr0302041;parent_type=mRNA" - - - -	10743	17,492,622 – 17,492,720	+	5	103	72.66	-1.96	0.48	0.822303
7810	dm3.chr3L	17,492,622 – 17,492,720		10744	17,492,622 – 17,492,720	-	5	103	72.66	-2.43	0.54	0.983838
7811	dm3.chr3L	17,503,649 – 17,503,745	- - - intron="intron;ID=intron_FBgn0036732:8_FBgn0036732:9;Name=Oatp74D-in;Parent=FBtr0075173,FBtr0302041;parent_type=mRNA" - - - -	10745	17,503,649 – 17,503,745	+	13	105	61.01	-0.46	0.46	0.810054
7811	dm3.chr3L	17,503,649 – 17,503,745		10746	17,503,649 – 17,503,745	-	13	105	61.01	-0.54	0.42	0.715633
7812	dm3.chr3L	17,510,274 – 17,510,364	- - - - - - - -	10747	17,510,274 – 17,510,364	-	7	94	54.61	-0.42	0.48	0.873975
7813	dm3.chr3L	17,517,291 – 17,517,392	- - - - - - - -	10748	17,517,291 – 17,517,392	+	5	104	51.15	-0.73	0.55	0.985785
7813	dm3.chr3L	17,517,291 – 17,517,392	- - - - - - - -	10749	17,517,291 – 17,517,392	-	5	104	51.15	-1.52	0.64	0.999503
7814	dm3.chr3L	17,523,890 – 17,523,992	- - - - - - - -	10750	17,523,890 – 17,523,992	+	7	104	70.91	-0.61	0.61	0.654058
7815	dm3.chr3L	17,524,419 – 17,524,531	- - - intron="intron;ID=intron_FBgn0259174:2_FBgn0259174:5;Name=Nedd4-in;Parent=FBtr0299646,FBtr0299647,FBtr0299648,FBtr0300519,FBtr0300520;parent_type=mRNA" - - - -	10751	17,524,419 – 17,524,531	-	6	114	73.20	-1.42	0.46	0.590899
7816	dm3.chr3L	17,525,055 – 17,525,193	- - - intron="intron;ID=intron_FBgn0259174:2_FBgn0259174:5;Name=Nedd4-in;Parent=FBtr0299646,FBtr0299647,FBtr0299648,FBtr0300519,FBtr0300520;parent_type=mRNA" - - - -	10752	17,525,055 – 17,525,163	+	4	108	83.33	-2.16	0.72	0.902150
				10753	17,525,055 – 17,525,163	-	4	108	83.33	-2.55	0.76	0.979714
				10754	17,525,086 – 17,525,193	+	5	111	70.32	-2.12	0.37	0.793824
				10755	17,525,086 – 17,525,193	-	5	111	70.32	-2.27	0.46	0.973409
7817	dm3.chr3L	17,525,633 – 17,525,699	- - - intron="intron;ID=intron_FBgn0259174:2_FBgn0259174:5;Name=Nedd4-in;Parent=FBtr0299646,FBtr0299647,FBtr0299648,FBtr0300519,FBtr0300520;parent_type=mRNA" - - - -	10756	17,525,633 – 17,525,699	+	7	66	65.39	-1.23	0.48	0.962201
7818	dm3.chr3L	17,531,508 – 17,531,583	- - - intron="intron;ID=intron_FBgn0259174:4_FBgn0259174:5;Name=Nedd4-in;Parent=FBtr0299642,FBtr0299645;parent_type=mRNA" - - - -	10757	17,531,508 – 17,531,583	+	6	75	73.56	-2.54	0.79	0.998632
7818	dm3.chr3L	17,531,508 – 17,531,583		10758	17,531,508 – 17,531,583	-	6	75	73.56	-1.70	0.71	0.986083
7819	dm3.chr3L	17,576,076 – 17,576,168	- - - - - - - -	10759	17,576,076 – 17,576,168	+	6	92	79.10	-2.94	0.58	0.986669
7819	dm3.chr3L	17,576,076 – 17,576,168	- - - - - - - -	10760	17,576,076 – 17,576,168	-	6	92	79.10	-2.37	0.60	0.935177
7820	dm3.chr3L	17,599,006 – 17,599,105	- - - intron="intron;ID=intron_FBgn0000567:10_FBgn0000567:9;Name=Eip74EF-in;Parent=FBtr0075202,FBtr0075203,FBtr0305796;parent_type=mRNA" - - - -	10761	17,599,006 – 17,599,105	-	7	109	89.34	-1.44	0.95	0.901229
7821	dm3.chr3L	17,618,049 – 17,618,113	- - - intron="intron;ID=intron_CG7510:1_CG7510:3;Name=CG7510-in;Parent=FBtr0075182;parent_type=mRNA" - - - -	10762	17,618,049 – 17,618,113	+	5	73	76.63	-1.14	0.79	0.783320
7822	dm3.chr3L	17,619,439 – 17,619,549	- - - - - - - -	10763	17,619,439 – 17,619,549	+	11	110	67.72	-1.04	0.50	0.865942
7823	dm3.chr3L	17,624,551 – 17,624,652	- - - - - - - -	10764	17,624,551 – 17,624,652	+	6	112	73.53	-1.93	0.44	0.756613
7823	dm3.chr3L	17,624,551 – 17,624,652	- - - - - - - -	10765	17,624,551 – 17,624,652	-	6	112	73.53	-2.37	0.49	0.973199
7824	dm3.chr3L	17,625,621 – 17,625,719	- - - - - - - -	10766	17,625,621 – 17,625,719	+	3	99	71.96	-2.49	0.37	0.646940
7825	dm3.chr3L	17,628,034 – 17,628,193	- - - intron="intron;ID=intron_FBgn0036742:1_FBgn0036742:2;Name=CG7497-in;Parent=FBtr0300284;parent_type=mRNA" - - - -	10767	17,628,034 – 17,628,139	+	6	119	77.73	-2.02	0.61	0.935518
				10768	17,628,034 – 17,628,139	-	6	119	77.73	-2.26	0.63	0.975874
				10769	17,628,099 – 17,628,193	-	6	96	72.36	-1.98	0.44	0.893481
7826	dm3.chr3L	17,636,581 – 17,636,682	- - CDS="CDS;ID=CDS_FBgn0004401:4_469;Name=Pep-cds;Parent=FBtr0075200;parent_type=mRNA" - - - - -	10770	17,636,581 – 17,636,682	-	12	104	88.39	-1.48	0.85	0.780260
7827	dm3.chr3L	17,645,479 – 17,645,545	- - - intron="intron;ID=intron_CG32179:1_CG32179:2;Name=Krn-in;Parent=FBtr0075197;parent_type=mRNA" - - - -	10771	17,645,479 – 17,645,545	-	7	76	72.75	-2.18	0.45	0.936172
7828	dm3.chr3L	17,663,938 – 17,664,069	- - - - - - - -	10772	17,663,938 – 17,664,035	+	6	117	68.23	-1.22	0.50	0.702504
7828	dm3.chr3L	17,663,938 – 17,664,069	- - - - - - - -	10773	17,663,978 – 17,664,069	+	7	91	62.58	-0.99	0.44	0.808263
7829	dm3.chr3L	17,666,261 – 17,666,320	- - - intron="intron;ID=intron_FBgn0085280:2_FBgn0085280:3;Name=CG34251-in;Parent=FBtr0301012;parent_type=mRNA" - - - -	10774	17,666,261 – 17,666,320	+	6	65	74.32	-1.00	0.69	0.792614
7830	dm3.chr3L	17,666,853 – 17,666,946	- - CDS="CDS;ID=CDS_FBgn0085280:3_386;Name=CG34251-cds;Parent=FBtr0112445,FBtr0301012;parent_type=mRNA" - - - - -	10775	17,666,853 – 17,666,946	+	9	112	64.51	-1.26	0.46	0.923963
7830	dm3.chr3L	17,666,853 – 17,666,946		10776	17,666,853 – 17,666,946	-	9	112	64.51	-1.05	0.44	0.782263
7831	dm3.chr3L	17,668,015 – 17,668,111	- - - intron="intron;ID=intron_FBgn0085280:3_FBgn0085280:4;Name=CG34251-in;Parent=FBtr0112445,FBtr0301012;parent_type=mRNA" - - - -	10777	17,668,015 – 17,668,111	-	5	99	73.58	-1.31	0.53	0.534787
7832	dm3.chr3L	17,670,829 – 17,670,928	- - - intron="intron;ID=intron_FBgn0085280:4_FBgn0085280:5;Name=CG34251-in;Parent=FBtr0112445,FBtr0301012;parent_type=mRNA" - - - -	10778	17,670,829 – 17,670,928	+	7	117	73.70	-1.73	0.54	0.905162
7832	dm3.chr3L	17,670,829 – 17,670,928		10779	17,670,829 – 17,670,928	-	7	117	73.70	-1.33	0.60	0.831222
7833	dm3.chr3L	17,673,516 – 17,673,606	- - - intron="intron;ID=intron_FBgn0085280:4_FBgn0085280:5;Name=CG34251-in;Parent=FBtr0112445,FBtr0301012;parent_type=mRNA" - - - -	10780	17,673,516 – 17,673,606	+	7	116	68.82	-1.42	0.53	0.873145
7834	dm3.chr3L	17,678,535 – 17,678,662	- - - - - - - -	10781	17,678,535 – 17,678,631	-	6	104	72.76	-1.92	0.61	0.985742
				10782	17,678,558 – 17,678,662	+	4	113	80.06	-2.15	0.64	0.895810
				10783	17,678,558 – 17,678,662	-	4	113	80.06	-3.96	0.69	0.999307
7835	dm3.chr3L	17,679,600 – 17,679,695	- - - - - - - -	10784	17,679,600 – 17,679,695	+	11	111	73.49	-2.04	0.32	0.500000
7836	dm3.chr3L	17,687,812 – 17,687,902	- - - intron="intron;ID=intron_CG32183:1_CG32183:2;Name=Ccn-in;Parent=FBtr0075186;parent_type=mRNA" - - - -	10785	17,687,812 – 17,687,902	+	5	90	95.56	-2.45	0.78	0.798922
7837	dm3.chr3L	17,699,272 – 17,699,368	- - - intron="intron;ID=intron_CG32183:1_CG32183:2;Name=Ccn-in;Parent=FBtr0075186;parent_type=mRNA" - - - -	10786	17,699,272 – 17,699,368	+	8	105	71.06	-2.62	0.60	0.999180
7837	dm3.chr3L	17,699,272 – 17,699,368		10787	17,699,272 – 17,699,368	-	8	105	71.06	-1.23	0.57	0.915331
7838	dm3.chr3L	17,703,379 – 17,703,477	- - - intron="intron;ID=intron_CG32183:1_CG32183:2;Name=Ccn-in;Parent=FBtr0075186;parent_type=mRNA" - - - -	10788	17,703,379 – 17,703,469	-	10	108	69.90	-1.31	0.50	0.895924
7838	dm3.chr3L	17,703,379 – 17,703,477		10789	17,703,385 – 17,703,477	-	6	104	81.15	-2.38	0.67	0.965895
7839	dm3.chr3L	17,735,474 – 17,735,603	- - - intron="intron;ID=intron_CG32183:9_CG32183:10;Name=Ccn-in;Parent=FBtr0075186;parent_type=mRNA" - - - -	10790	17,735,474 – 17,735,571	-	4	102	73.53	-1.80	0.60	0.900048
				10791	17,735,512 – 17,735,603	+	4	93	59.27	-1.99	0.32	0.863242
				10792	17,735,512 – 17,735,603	-	4	93	59.27	-1.22	0.44	0.819708
7840	dm3.chr3L	17,736,719 – 17,736,783	- - - intron="intron;ID=intron_CG32183:9_CG32183:10;Name=Ccn-in;Parent=FBtr0075186;parent_type=mRNA" - - - -	10793	17,736,719 – 17,736,783	+	8	68	61.82	-0.59	0.42	0.538222
7841	dm3.chr3L	17,756,015 – 17,756,111	- - - - - - - -	10794	17,756,015 – 17,756,111	+	9	110	58.34	-3.10	0.03	0.757436
7842	dm3.chr3L	17,765,881 – 17,766,064	- - - - - - - -	10795	17,765,881 – 17,765,992	+	5	111	95.59	-1.74	0.91	0.807750
				10796	17,765,920 – 17,766,028	+	5	108	95.09	-1.96	0.91	0.901663
				10797	17,765,954 – 17,766,064	+	6	113	83.12	-1.67	0.64	0.558656
7843	dm3.chr3L	17,773,162 – 17,773,269	- - - - - - - -	10798	17,773,162 – 17,773,269	+	8	111	72.29	-1.94	0.56	0.984328
7844	dm3.chr3L	17,774,341 – 17,774,437	- - - - - - - -	10799	17,774,341 – 17,774,437	+	7	115	80.00	-1.51	0.78	0.887972
7844	dm3.chr3L	17,774,341 – 17,774,437	- - - - - - - -	10800	17,774,341 – 17,774,437	-	7	115	80.00	-2.44	0.81	0.993389
7845	dm3.chr3L	17,776,935 – 17,777,056	- - - - - - - -	10801	17,776,935 – 17,777,056	+	9	137	82.09	-1.95	0.52	0.566119
7846	dm3.chr3L	17,795,351 – 17,795,405	- - - - - - - -	10802	17,795,351 – 17,795,405	-	5	54	63.33	-1.03	0.52	0.922864
7847	dm3.chr3L	17,802,004 – 17,802,100	- - - - - - - -	10803	17,802,004 – 17,802,100	-	4	106	81.31	-2.52	0.59	0.889016
7848	dm3.chr3L	17,826,622 – 17,826,678	- - CDS="CDS;ID=CDS_CG32188:1_291;Name=CG32188-cds;Parent=FBtr0075164;parent_type=mRNA" intron="intron;ID=intron_CG7446:3_CG7446:4;Name=Grd-in;Parent=FBtr0075139;parent_type=mRNA" - - - -	10804	17,826,622 – 17,826,678	+	3	56	67.86	-2.20	0.54	0.954499
7849	dm3.chr3L	17,840,113 – 17,840,170	- - - - - - - -	10805	17,840,113 – 17,840,170	-	7	69	71.00	-0.98	0.57	0.635862
7850	dm3.chr3L	17,853,804 – 17,853,894	- - - - - - - -	10806	17,853,804 – 17,853,894	+	4	91	93.19	-1.82	0.93	0.915091
7851	dm3.chr3L	17,854,655 – 17,854,736	- - - - - - - -	10807	17,854,655 – 17,854,736	-	5	82	68.20	-1.87	0.60	0.989911
7852	dm3.chr3L	17,880,625 – 17,880,732	- - - - - - - -	10808	17,880,625 – 17,880,732	-	5	108	90.06	-1.66	0.80	0.568723
7853	dm3.chr3L	17,881,238 – 17,881,353	- - - intron="intron;ID=intron_FBgn0036768:1_FBgn0036768:2;Name=CG7402-in;Parent=FBtr0075143;parent_type=mRNA" - - - -	10809	17,881,238 – 17,881,353	-	6	118	67.94	-0.53	0.55	0.558287
7854	dm3.chr3L	17,892,263 – 17,892,366	- - - - - - - -	10810	17,892,263 – 17,892,362	-	9	118	69.99	-1.72	0.53	0.949681
7854	dm3.chr3L	17,892,263 – 17,892,366	- - - - - - - -	10811	17,892,263 – 17,892,366	-	9	118	69.48	-1.90	0.46	0.948911
7855	dm3.chr3L	17,896,612 – 17,896,723	- - - intron="intron;ID=intron_FBgn0036770:6_FBgn0036770:5;Name=Prestin-in;Parent=FBtr0075153;parent_type=mRNA" - - - -	10812	17,896,612 – 17,896,723	-	6	119	74.63	-1.82	0.45	0.663354
7856	dm3.chr3L	17,911,527 – 17,911,621	- - - - - - - -	10813	17,911,527 – 17,911,621	-	3	97	61.40	-2.16	0.38	0.888283
7857	dm3.chr3L	17,921,480 – 17,921,575	- - - - - - - -	10814	17,921,480 – 17,921,575	+	7	102	73.57	-1.62	0.53	0.923764
7858	dm3.chr3L	17,932,028 – 17,932,117	- - - - - - - -	10815	17,932,028 – 17,932,117	+	6	97	86.69	-3.25	0.84	0.997148
7859	dm3.chr3L	17,936,405 – 17,936,462	- - - - - - - -	10816	17,936,405 – 17,936,462	+	5	60	74.57	-2.08	0.56	0.949969
7859	dm3.chr3L	17,936,405 – 17,936,462	- - - - - - - -	10817	17,936,405 – 17,936,462	-	5	60	74.57	-1.31	0.78	0.928901
7860	dm3.chr3L	17,937,006 – 17,937,076	- - - - - - - -	10818	17,937,006 – 17,937,076	+	6	71	78.77	-1.35	0.60	0.545363
7861	dm3.chr3L	17,940,707 – 17,940,762	- - - - - - - -	10819	17,940,707 – 17,940,762	-	3	55	100.00	-1.19	1.00	0.757598
7862	dm3.chr3L	17,961,320 – 17,961,387	- - - - - - - -	10820	17,961,320 – 17,961,387	+	5	71	86.06	-2.72	0.57	0.865852
7863	dm3.chr3L	17,968,623 – 17,968,722	- - - - - - - -	10821	17,968,623 – 17,968,722	-	12	113	61.04	-1.39	0.32	0.829527
7864	dm3.chr3L	17,975,622 – 17,975,723	- - - - - - - -	10822	17,975,622 – 17,975,720	+	4	121	54.79	-1.55	0.31	0.599310
				10823	17,975,622 – 17,975,720	-	4	121	54.79	-1.67	0.45	0.981301
				10824	17,975,625 – 17,975,723	-	6	120	58.96	-1.68	0.45	0.978404
7865	dm3.chr3L	17,977,213 – 17,977,306	- - - - - - - -	10825	17,977,213 – 17,977,306	-	5	111	67.56	-3.01	0.68	0.999511
7866	dm3.chr3L	17,987,178 – 17,987,243	- - - intron="intron;ID=intron_CG8127:7_CG8127:2;Name=Eip75B-in;Parent=FBtr0075149;parent_type=mRNA" - - - -	10826	17,987,178 – 17,987,243	+	5	72	88.98	-2.01	0.88	0.938713
7867	dm3.chr3L	17,991,897 – 17,991,999	- - CDS="CDS;ID=CDS_CG8127:7_296;Name=Eip75B-cds;Parent=FBtr0075149;parent_type=mRNA" - - - - -	10827	17,991,897 – 17,991,994	-	6	97	86.80	-2.30	0.81	0.970112
7867	dm3.chr3L	17,991,897 – 17,991,999		10828	17,991,903 – 17,991,999	-	7	99	79.02	-1.92	0.72	0.975439
7868	dm3.chr3L	17,999,064 – 17,999,119	- - - - - - - -	10829	17,999,064 – 17,999,119	-	7	55	91.17	-2.42	0.79	0.938703
7869	dm3.chr3L	18,025,981 – 18,026,077	- - - - - - - -	10830	18,025,981 – 18,026,077	+	6	97	79.02	-1.68	0.65	0.874546
7870	dm3.chr3L	18,029,212 – 18,029,315	- - - - - - - -	10831	18,029,212 – 18,029,315	-	7	110	78.54	-1.67	0.59	0.812074
7871	dm3.chr3L	18,030,205 – 18,030,266	- - - - - - - -	10832	18,030,205 – 18,030,266	+	8	74	80.78	-1.19	0.76	0.590694
7872	dm3.chr3L	18,030,289 – 18,030,381	- - - - - - - -	10833	18,030,289 – 18,030,381	-	7	114	68.24	-1.79	0.48	0.913917
7873	dm3.chr3L	18,031,800 – 18,031,851	- - - - - - - -	10834	18,031,800 – 18,031,851	-	6	59	76.49	-0.92	0.74	0.647028
7874	dm3.chr3L	18,056,637 – 18,056,760	- - - - - - - -	10835	18,056,637 – 18,056,760	+	4	143	61.19	-1.58	0.39	0.633854
7874	dm3.chr3L	18,056,637 – 18,056,760	- - - - - - - -	10836	18,056,637 – 18,056,760	-	4	143	61.19	-1.90	0.53	0.986091
7875	dm3.chr3L	18,059,033 – 18,059,083	- - - - - - - -	10837	18,059,033 – 18,059,083	+	7	65	67.98	-1.64	0.61	0.975656
7876	dm3.chr3L	18,073,669 – 18,073,801	- - - - - - - -	10838	18,073,669 – 18,073,801	+	6	138	77.13	-1.61	0.64	0.873923
7877	dm3.chr3L	18,082,694 – 18,082,760	- - CDS="CDS;ID=CDS_CG13698:7_306;Name=CG13698-cds;Parent=FBtr0075137;parent_type=mRNA" - - - - -	10839	18,082,694 – 18,082,760	-	6	66	67.47	-1.58	0.32	0.500000
7878	dm3.chr3L	18,085,608 – 18,085,763	- - - intron="intron;ID=intron_CG13698:2_CG13698:3;Name=CG13698-in;Parent=FBtr0075137;parent_type=mRNA" - - - -	10840	18,085,608 – 18,085,763	+	6	168	78.92	-1.45	0.64	0.599460
7879	dm3.chr3L	18,089,049 – 18,089,167	- - - intron="intron;ID=intron_CG13698:2_CG13698:3;Name=CG13698-in;Parent=FBtr0075137;parent_type=mRNA" - - - -	10841	18,089,049 – 18,089,167	+	6	120	73.82	-1.53	0.46	0.630250
7880	dm3.chr3L	18,091,125 – 18,091,256	- - - intron="intron;ID=intron_CG13698:2_CG13698:3;Name=CG13698-in;Parent=FBtr0075137;parent_type=mRNA" - - - -	10842	18,091,125 – 18,091,240	+	4	115	93.33	-1.62	0.88	0.681730
7880	dm3.chr3L	18,091,125 – 18,091,256		10843	18,091,165 – 18,091,256	+	4	91	91.94	-2.45	0.90	0.977489
7881	dm3.chr3L	18,092,234 – 18,092,290	- - - intron="intron;ID=intron_CG13698:2_CG13698:3;Name=CG13698-in;Parent=FBtr0075137;parent_type=mRNA" - - - -	10844	18,092,234 – 18,092,290	+	8	58	77.25	-2.62	0.68	0.996734
7881	dm3.chr3L	18,092,234 – 18,092,290		10845	18,092,234 – 18,092,290	-	8	58	77.25	-1.87	0.64	0.955820
7882	dm3.chr3L	18,138,116 – 18,138,225	- - CDS="CDS;ID=CDS_CG13695:3_280;Name=gk-cds;Parent=FBtr0075126;parent_type=mRNA" - - - - -	10846	18,138,116 – 18,138,225	+	13	117	72.40	-1.41	0.44	0.833950
7882	dm3.chr3L	18,138,116 – 18,138,225		10847	18,138,116 – 18,138,225	-	13	117	72.40	-1.14	0.43	0.583155
7883	dm3.chr3L	18,141,990 – 18,142,086	- - - - - - - -	10848	18,141,990 – 18,142,086	+	10	105	68.79	-1.00	0.45	0.745954
7883	dm3.chr3L	18,141,990 – 18,142,086	- - - - - - - -	10849	18,141,990 – 18,142,086	-	10	105	68.79	-1.42	0.44	0.925485
7884	dm3.chr3L	18,147,829 – 18,147,928	- - - - - - - -	10850	18,147,829 – 18,147,928	-	8	111	78.51	-1.77	0.70	0.938623
7885	dm3.chr3L	18,166,415 – 18,166,560	- - CDS="CDS;ID=CDS_CG5123:2_303;Name=W-cds;Parent=FBtr0075133;parent_type=mRNA" - - - - -	10851	18,166,415 – 18,166,508	+	3	93	97.13	-1.22	0.96	0.634344
7885	dm3.chr3L	18,166,415 – 18,166,560		10852	18,166,468 – 18,166,560	-	5	92	78.27	-1.63	0.70	0.793891
7886	dm3.chr3L	18,181,120 – 18,181,216	- - - - - - - -	10853	18,181,120 – 18,181,216	+	6	98	70.03	-1.51	0.45	0.785859
7887	dm3.chr3L	18,225,728 – 18,225,791	- - - - - - - -	10854	18,225,728 – 18,225,791	-	3	63	93.51	-1.69	0.98	0.939967
7888	dm3.chr3L	18,246,173 – 18,246,264	- - - - - - - -	10855	18,246,173 – 18,246,264	+	5	91	83.24	-2.22	0.56	0.620907
7889	dm3.chr3L	18,254,066 – 18,254,157	- - - - - - - -	10856	18,254,066 – 18,254,157	+	10	106	74.30	-1.61	0.47	0.739414
7890	dm3.chr3L	18,256,852 – 18,256,903	- - - - - - - -	10857	18,256,852 – 18,256,903	-	6	51	72.94	-0.71	0.67	0.708314
7891	dm3.chr3L	18,258,074 – 18,258,133	- - - - - - - -	10858	18,258,074 – 18,258,133	+	6	59	97.74	-1.12	0.99	0.732619
7892	dm3.chr3L	18,260,968 – 18,261,059	- - - - - - - -	10859	18,260,968 – 18,261,059	+	3	95	86.52	-2.37	0.66	0.671436
7893	dm3.chr3L	18,261,650 – 18,261,766	- - - - - - - -	10860	18,261,650 – 18,261,745	+	11	115	80.83	-2.68	0.47	0.912025
7893	dm3.chr3L	18,261,650 – 18,261,766	- - - - - - - -	10861	18,261,668 – 18,261,766	+	11	116	79.83	-3.57	0.55	0.998307
7894	dm3.chr3L	18,263,577 – 18,263,711	- - - - - - - -	10862	18,263,577 – 18,263,682	+	7	105	67.57	-3.16	0.31	0.995798
				10863	18,263,577 – 18,263,682	-	7	105	67.57	-2.42	0.40	0.992610
				10864	18,263,615 – 18,263,711	+	5	96	91.59	-1.92	0.81	0.722801
7895	dm3.chr3L	18,272,685 – 18,272,753	- - - - - - - -	10865	18,272,685 – 18,272,753	+	6	68	84.81	-1.41	0.76	0.529037
7896	dm3.chr3L	18,280,497 – 18,280,592	- - - - - - - -	10866	18,280,497 – 18,280,592	-	12	113	73.35	-2.39	0.71	0.998603
7897	dm3.chr3L	18,293,676 – 18,293,758	- - - - - - - -	10867	18,293,676 – 18,293,758	+	7	107	55.01	-0.68	0.42	0.722587
7898	dm3.chr3L	18,304,985 – 18,305,105	- - - - - - - -	10868	18,304,985 – 18,305,079	-	9	112	80.44	-1.83	0.55	0.608915
7898	dm3.chr3L	18,304,985 – 18,305,105	- - - - - - - -	10869	18,305,014 – 18,305,105	-	11	105	72.28	-1.57	0.47	0.914163
7899	dm3.chr3L	18,316,612 – 18,316,757	- - - - - - - -	10870	18,316,612 – 18,316,757	+	4	163	64.99	-1.23	0.49	0.701568
7899	dm3.chr3L	18,316,612 – 18,316,757	- - - - - - - -	10871	18,316,612 – 18,316,757	-	4	163	64.99	-1.87	0.35	0.627159
7900	dm3.chr3L	18,331,548 – 18,331,645	- - - - - - - -	10872	18,331,548 – 18,331,639	+	5	91	97.58	-0.68	1.03	0.646859
				10873	18,331,548 – 18,331,639	-	5	91	97.58	-1.46	0.96	0.793184
				10874	18,331,554 – 18,331,645	-	5	91	98.02	-1.44	0.97	0.809640
7901	dm3.chr3L	18,336,507 – 18,336,599	- - - - - - - -	10875	18,336,507 – 18,336,599	+	11	106	82.27	-2.75	0.70	0.994012
7902	dm3.chr3L	18,362,326 – 18,362,422	- - - - - - - -	10876	18,362,326 – 18,362,417	-	6	116	65.32	-1.63	0.45	0.920053
7902	dm3.chr3L	18,362,326 – 18,362,422	- - - - - - - -	10877	18,362,326 – 18,362,422	-	4	111	75.88	-1.52	0.82	0.923524
7903	dm3.chr3L	18,370,643 – 18,370,733	- - - - - - - -	10878	18,370,643 – 18,370,733	+	12	114	80.78	-1.64	0.68	0.824059
7903	dm3.chr3L	18,370,643 – 18,370,733	- - - - - - - -	10879	18,370,643 – 18,370,733	-	12	114	80.78	-1.67	0.62	0.706127
7904	dm3.chr3L	18,381,152 – 18,381,243	- - - - - - - -	10880	18,381,152 – 18,381,243	-	11	107	74.35	-1.07	0.59	0.788764
7905	dm3.chr3L	18,383,627 – 18,383,723	- - - - - - - -	10881	18,383,627 – 18,383,723	-	11	101	80.68	-1.33	0.65	0.693553
7906	dm3.chr3L	18,391,800 – 18,391,900	- - - - - - - -	10882	18,391,800 – 18,391,900	+	11	116	79.57	-2.41	0.44	0.861731
7907	dm3.chr3L	18,399,044 – 18,399,138	- - - - - - - -	10883	18,399,044 – 18,399,138	+	5	113	79.10	-2.09	0.55	0.667199
7907	dm3.chr3L	18,399,044 – 18,399,138	- - - - - - - -	10884	18,399,044 – 18,399,138	-	5	113	79.10	-2.37	0.57	0.887619
7908	dm3.chr3L	18,399,423 – 18,399,516	- - - - - - - -	10885	18,399,423 – 18,399,516	-	9	114	74.78	-1.41	0.66	0.867114
7909	dm3.chr3L	18,413,165 – 18,413,271	- - - - - - - -	10886	18,413,165 – 18,413,271	+	6	116	69.13	-1.23	0.47	0.528652
7910	dm3.chr3L	18,418,119 – 18,418,220	- - - - - - - -	10887	18,418,119 – 18,418,220	+	11	106	71.16	-1.69	0.53	0.979139
7911	dm3.chr3L	18,428,814 – 18,428,912	- - - - - - - -	10888	18,428,814 – 18,428,912	+	4	104	80.57	-1.87	0.65	0.659347
7911	dm3.chr3L	18,428,814 – 18,428,912	- - - - - - - -	10889	18,428,814 – 18,428,912	-	4	104	80.57	-2.77	0.61	0.965899
7912	dm3.chr3L	18,434,462 – 18,434,595	- - - - - - - -	10890	18,434,462 – 18,434,576	-	7	115	90.21	-1.47	0.91	0.849925
7912	dm3.chr3L	18,434,462 – 18,434,595	- - - - - - - -	10891	18,434,487 – 18,434,595	-	7	120	82.68	-1.06	0.87	0.749289
7913	dm3.chr3L	18,440,325 – 18,440,396	- - - - - - - -	10892	18,440,325 – 18,440,396	+	12	77	79.72	-1.39	0.80	0.936684
7913	dm3.chr3L	18,440,325 – 18,440,396	- - - - - - - -	10893	18,440,325 – 18,440,396	-	12	77	79.72	-2.06	0.58	0.939994
7914	dm3.chr3L	18,442,542 – 18,442,674	- - - - - - - -	10894	18,442,542 – 18,442,644	+	12	119	84.01	-2.56	0.50	0.743209
7914	dm3.chr3L	18,442,542 – 18,442,674	- - - - - - - -	10895	18,442,567 – 18,442,674	+	9	118	80.38	-2.12	0.68	0.960347
7915	dm3.chr3L	18,451,335 – 18,451,436	- - - - - - - -	10896	18,451,335 – 18,451,436	-	6	108	76.58	-2.71	0.51	0.987558
7916	dm3.chr3L	18,453,583 – 18,453,636	- - - intron="intron;ID=intron_FBgn0052196:4_FBgn0052196:3;Name=CG32196-in;Parent=FBtr0273401;parent_type=mRNA" - - - -	10897	18,453,583 – 18,453,636	+	5	68	54.24	-1.16	0.40	0.806443
7917	dm3.chr3L	18,495,872 – 18,495,970	- - - - - - - -	10898	18,495,872 – 18,495,970	+	5	99	84.15	-2.11	0.78	0.947538
7917	dm3.chr3L	18,495,872 – 18,495,970	- - - - - - - -	10899	18,495,872 – 18,495,970	-	5	99	84.15	-1.98	0.64	0.664560
7918	dm3.chr3L	18,515,308 – 18,515,408	- - - - - - - -	10900	18,515,308 – 18,515,408	-	11	115	64.23	-1.64	0.30	0.768059
7919	dm3.chr3L	18,519,825 – 18,519,939	- - - - - - - -	10901	18,519,825 – 18,519,939	-	4	114	80.56	-2.07	0.64	0.840537
7920	dm3.chr3L	18,530,391 – 18,530,456	- - - - - - - -	10902	18,530,391 – 18,530,456	+	3	65	56.92	-0.97	0.77	0.977928
7920	dm3.chr3L	18,530,391 – 18,530,456	- - - - - - - -	10903	18,530,391 – 18,530,456	-	3	65	56.92	-1.26	0.55	0.951300
7921	dm3.chr3L	18,531,760 – 18,531,859	- - - - - - - -	10904	18,531,760 – 18,531,859	-	7	111	77.90	-1.83	0.55	0.777002
7922	dm3.chr3L	18,555,686 – 18,555,749	- - - intron="intron;ID=intron_CG7285:1_CG7285:2;Name=star1-in;Parent=FBtr0089578;parent_type=mRNA" - - - -	10905	18,555,686 – 18,555,749	+	11	69	75.96	-0.60	0.76	0.710169
7923	dm3.chr3L	18,611,473 – 18,611,586	FBnoncoding="tRNA;ID=FBtr0075107;Name=tRNA:CR32200-RA;Parent=FBgn0052200;Alias=CR32200-RA;Dbxref=FlyBase_Annotation_IDs:CR32200-RA;score_text=Weakly" tRNAscann="Pro_chr3L_trna31" - - "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|3.1e-29" - - -	10906	18,611,473 – 18,611,586	+	12	115	80.79	-0.93	0.85	0.822825
7923	dm3.chr3L	18,611,473 – 18,611,586		10907	18,611,473 – 18,611,586	-	12	115	80.79	-2.42	0.85	0.996310
7924	dm3.chr3L	18,623,994 – 18,624,087	- - - intron="intron;ID=intron_CG6896:2_CG6896:3;Name=MYPT-75D-in;Parent=FBtr0075049;parent_type=mRNA" - - - -	10908	18,623,994 – 18,624,087	+	6	104	68.96	-1.21	0.54	0.612611
7925	dm3.chr3L	18,637,342 – 18,637,436	- - - intron="intron;ID=intron_CG6896:2_CG6896:3;Name=MYPT-75D-in;Parent=FBtr0075049;parent_type=mRNA" - - - -	10909	18,637,342 – 18,637,436	-	5	95	96.19	-1.92	0.83	0.580513
7926	dm3.chr3L	18,641,220 – 18,641,300	- - - intron="intron;ID=intron_CG6896:2_CG6896:3;Name=MYPT-75D-in;Parent=FBtr0075049;parent_type=mRNA" - - - -	10910	18,641,220 – 18,641,300	+	10	80	80.49	-1.70	0.72	0.952565
7927	dm3.chr3L	18,641,734 – 18,641,893	- - - intron="intron;ID=intron_CG6896:2_CG6896:3;Name=MYPT-75D-in;Parent=FBtr0075049;parent_type=mRNA" - - - -	10911	18,641,734 – 18,641,854	+	5	120	90.65	-2.06	0.74	0.625801
7927	dm3.chr3L	18,641,734 – 18,641,893		10912	18,641,774 – 18,641,893	+	6	120	81.23	-1.72	0.57	0.522979
7928	dm3.chr3L	18,641,964 – 18,642,094	- - - intron="intron;ID=intron_CG6896:2_CG6896:3;Name=MYPT-75D-in;Parent=FBtr0075049;parent_type=mRNA" - - - -	10913	18,641,964 – 18,642,065	+	6	112	71.22	-1.30	0.50	0.657202
7928	dm3.chr3L	18,641,964 – 18,642,094		10914	18,642,000 – 18,642,094	+	6	115	71.73	-2.22	0.37	0.743485
7929	dm3.chr3L	18,643,592 – 18,643,674	- - - intron="intron;ID=intron_CG6896:2_CG6896:3;Name=MYPT-75D-in;Parent=FBtr0075049;parent_type=mRNA" - - - -	10915	18,643,592 – 18,643,674	+	4	82	83.54	-2.01	0.75	0.891858
7930	dm3.chr3L	18,653,866 – 18,653,939	- - - intron="intron;ID=intron_CG6896:2_CG6896:3;Name=MYPT-75D-in;Parent=FBtr0075049;parent_type=mRNA" - - - -	10916	18,653,866 – 18,653,939	+	7	78	85.15	-1.70	0.67	0.552868
7931	dm3.chr3L	18,695,266 – 18,695,356	- - - - - - - -	10917	18,695,266 – 18,695,356	+	8	107	77.86	-2.52	0.51	0.962456
7931	dm3.chr3L	18,695,266 – 18,695,356	- - - - - - - -	10918	18,695,266 – 18,695,356	-	8	107	77.86	-2.24	0.52	0.918531
7932	dm3.chr3L	18,714,710 – 18,714,813	- - - - - - - -	10919	18,714,710 – 18,714,813	-	6	104	78.53	-1.96	0.63	0.950006
7933	dm3.chr3L	18,717,578 – 18,717,683	- - - - - - - -	10920	18,717,578 – 18,717,683	+	4	106	78.71	-1.35	0.81	0.766198
7934	dm3.chr3L	18,721,330 – 18,721,426	- - - - - - - -	10921	18,721,330 – 18,721,426	+	5	96	86.15	-3.02	0.74	0.991065
7934	dm3.chr3L	18,721,330 – 18,721,426	- - - - - - - -	10922	18,721,330 – 18,721,426	-	5	96	86.15	-2.26	0.72	0.901586
7935	dm3.chr3L	18,726,118 – 18,726,209	- - - - - - - -	10923	18,726,118 – 18,726,209	-	3	93	87.00	-2.48	0.66	0.739443
7936	dm3.chr3L	18,726,462 – 18,726,573	- - - - - - - -	10924	18,726,462 – 18,726,573	-	7	120	73.63	-1.86	0.41	0.622205
7937	dm3.chr3L	18,729,757 – 18,729,885	- - - - - - - -	10925	18,729,757 – 18,729,863	+	6	118	69.42	-2.09	0.40	0.913304
				10926	18,729,757 – 18,729,863	-	6	118	69.42	-1.77	0.35	0.507106
				10927	18,729,789 – 18,729,885	+	5	118	70.85	-2.58	0.36	0.905535
				10928	18,729,789 – 18,729,885	-	5	118	70.85	-2.13	0.41	0.827859
7938	dm3.chr3L	18,742,480 – 18,742,597	- - CDS="CDS;ID=CDS_FBgn0036813:2_304;Name=Aut1-cds;Parent=FBtr0075055;parent_type=mRNA" - - - - -	10929	18,742,480 – 18,742,597	+	15	120	72.40	-1.18	0.48	0.834609
7939	dm3.chr3L	18,751,925 – 18,752,030	- - - intron="intron;ID=intron_FBgn0001078:9_FBgn0001078:8;Name=ftz-f1-in;Parent=FBtr0075086;parent_type=mRNA" - - - -	10930	18,751,925 – 18,752,016	+	7	101	74.50	-2.43	0.62	0.995590
7939	dm3.chr3L	18,751,925 – 18,752,030		10931	18,751,939 – 18,752,030	+	6	100	87.71	-2.71	0.82	0.987119
7940	dm3.chr3L	18,772,239 – 18,772,304	- - - intron="intron;ID=intron_FBgn0001078:12_FBgn0001078:9;Name=ftz-f1-in;Parent=FBtr0075086;parent_type=mRNA" - - - -	10932	18,772,239 – 18,772,304	+	5	65	63.85	-0.54	0.50	0.580739
7940	dm3.chr3L	18,772,239 – 18,772,304		10933	18,772,239 – 18,772,304	-	5	65	63.85	-0.99	0.40	0.518681
7941	dm3.chr3L	18,796,755 – 18,796,842	- - CDS="CDS;ID=CDS_CG14073:3_280;Name=CG14073-cds;Parent=FBtr0075084,FBtr0075085;parent_type=mRNA" - - - - -	10934	18,796,755 – 18,796,842	+	13	98	77.93	-0.76	0.67	0.500000
7942	dm3.chr3L	18,813,810 – 18,813,910	- - - - - - - -	10935	18,813,810 – 18,813,910	+	6	108	69.42	-1.39	0.54	0.935420
7942	dm3.chr3L	18,813,810 – 18,813,910	- - - - - - - -	10936	18,813,810 – 18,813,910	-	6	108	69.42	-1.80	0.46	0.944832
7943	dm3.chr3L	18,816,537 – 18,816,617	- - - intron="intron;ID=intron_CG6871:1_CG6871:2;Name=Cat-in;Parent=FBtr0075058;parent_type=mRNA" - - - -	10937	18,816,537 – 18,816,617	-	8	91	64.18	-1.10	0.41	0.774442
7944	dm3.chr3L	18,824,389 – 18,824,500	- - CDS="CDS;ID=CDS_FBgn0036816:6_282;Name=Indy-cds;Parent=FBtr0075081;parent_type=mRNA" - - - - -	10938	18,824,389 – 18,824,500	-	14	116	67.73	-0.50	0.45	0.614222
7945	dm3.chr3L	18,836,804 – 18,836,911	- - - - - - - -	10939	18,836,804 – 18,836,911	-	7	117	61.09	-1.93	0.27	0.771254
7946	dm3.chr3L	18,845,504 – 18,845,622	- - - - - - - -	10940	18,845,504 – 18,845,622	+	9	129	68.72	-0.91	0.49	0.772944
7947	dm3.chr3L	18,853,924 – 18,854,008	- - - - - - - -	10941	18,853,924 – 18,854,008	-	10	93	59.19	-0.91	0.49	0.979068
7948	dm3.chr3L	18,854,076 – 18,854,130	FBnoncoding="pre_miRNA;ID=FBtr0304506;Name=mir-315-RM;Parent=FBgn0262461;Alias=CR43036-RM;Dbxref=FlyBase_Annotation_IDs:CR43036-RM,miRBase:MI0000427" - - - "Rfam_10.0=RF00717;mir-315;AASU01006755.1/588-667\|1.7e-19" - - "mirBase_v16=dme-mir-315\|2.3e-25"	10942	18,854,076 – 18,854,130	+	14	57	83.10	-1.06	0.87	0.859190
7948	dm3.chr3L	18,854,076 – 18,854,130		10943	18,854,076 – 18,854,130	-	14	57	83.10	-1.76	0.81	0.970160
7949	dm3.chr3L	18,884,258 – 18,884,355	- - - - - - - -	10944	18,884,258 – 18,884,355	-	5	97	88.14	-2.19	0.82	0.939393
7950	dm3.chr3L	18,889,284 – 18,889,553	FBnoncoding="snoRNA;ID=FBtr0091666;Name=snoRNA:Psi28S-2566-RA;Parent=FBgn0086661;Alias=snoRNA:269-RA;Dbxref=FlyBase_Annotation_IDs:CR33686-RA,REFSEQ:NR_002489;score_text=Weakly" - - intron="intron;ID=intron_CG3902:2_CG3902:3;Name=CG3902-in;Parent=FBtr0075076;parent_type=mRNA" - "Noncode_2.0=n3518_u3146_AJ544016_snoRNA_Drosophila\|8e-100" "unique_Noncode_2.0=u3146_snoRNA_Drosophila\|7e-100" -	10945	18,889,284 – 18,889,387	-	10	104	58.34	-1.82	0.16	0.509462
				10946	18,889,387 – 18,889,488	-	12	119	75.13	-3.04	0.43	0.994041
				10947	18,889,458 – 18,889,553	-	12	120	76.42	-1.24	0.58	0.519196
7951	dm3.chr3L	18,897,431 – 18,897,542	- - CDS="CDS;ID=CDS_CG3889:2_279;Name=CSN1b-cds;Parent=FBtr0075074;parent_type=mRNA" - - - - -	10948	18,897,431 – 18,897,542	+	9	111	67.22	-1.42	0.34	0.626744
7952	dm3.chr3L	18,908,606 – 18,908,697	- - - - - - - -	10949	18,908,606 – 18,908,697	+	9	100	66.88	-0.91	0.53	0.911518
7953	dm3.chr3L	18,925,362 – 18,925,462	- - - intron="intron;ID=intron_FBgn0052204:7_FBgn0052204:6;Name=CG32204-in;Parent=FBtr0113429;parent_type=mRNA" - - - -	10950	18,925,362 – 18,925,462	+	3	100	76.84	-1.80	0.74	0.846211
7954	dm3.chr3L	18,937,722 – 18,937,827	- - - intron="intron;ID=intron_FBgn0052204:8_FBgn0052204:7;Name=CG32204-in;Parent=FBtr0113429;parent_type=mRNA" - - - -	10951	18,937,722 – 18,937,827	+	4	107	91.41	-2.45	0.88	0.972629
7954	dm3.chr3L	18,937,722 – 18,937,827		10952	18,937,722 – 18,937,827	-	4	107	91.41	-1.59	0.94	0.892539
7955	dm3.chr3L	18,964,504 – 18,964,586	- - - - - - - -	10953	18,964,504 – 18,964,586	+	5	82	87.42	-1.79	0.88	0.919154
7956	dm3.chr3L	18,970,407 – 18,970,481	- - - - - - - -	10954	18,970,407 – 18,970,481	+	8	85	60.08	-0.97	0.45	0.888118
7957	dm3.chr3L	18,977,430 – 18,977,530	- - - - - - - -	10955	18,977,430 – 18,977,530	+	8	104	81.01	-2.70	0.49	0.938392
7957	dm3.chr3L	18,977,430 – 18,977,530	- - - - - - - -	10956	18,977,430 – 18,977,530	-	8	104	81.01	-3.14	0.56	0.993609
7958	dm3.chr3L	18,986,796 – 18,986,900	- - CDS="CDS;ID=CDS_CG18135:4_313;Name=CG18135-cds;Parent=FBtr0075044;parent_type=mRNA" - - - - -	10957	18,986,796 – 18,986,900	+	9	114	59.67	-1.59	0.36	0.962158
7959	dm3.chr3L	18,995,150 – 18,995,210	- - CDS="CDS;ID=CDS_FBgn0036839:3_438;Name=CG18136-cds;Parent=FBtr0075040;parent_type=mRNA" - - - - -	10958	18,995,150 – 18,995,210	-	9	67	68.83	-1.22	0.42	0.677154
7960	dm3.chr3L	19,003,977 – 19,004,091	- - CDS="CDS;ID=CDS_CG11614:2_291;Name=nkd-cds;Parent=FBtr0075039;parent_type=mRNA" - - - - -	10959	19,003,977 – 19,004,091	+	12	117	78.74	-1.05	0.58	0.530244
7961	dm3.chr3L	19,005,729 – 19,005,849	- - - intron="intron;ID=intron_CG11614:1_CG11614:2;Name=nkd-in;Parent=FBtr0075039;parent_type=mRNA" - - - -	10960	19,005,729 – 19,005,826	+	10	114	73.55	-1.06	0.66	0.862902
				10961	19,005,729 – 19,005,826	-	10	114	73.55	-1.49	0.51	0.806354
				10962	19,005,753 – 19,005,849	+	9	104	79.97	-1.18	0.73	0.701965
7962	dm3.chr3L	19,006,907 – 19,007,011	- - - intron="intron;ID=intron_CG11614:1_CG11614:2;Name=nkd-in;Parent=FBtr0075039;parent_type=mRNA" - - - -	10963	19,006,907 – 19,007,011	+	6	109	69.92	-1.51	0.52	0.921521
7963	dm3.chr3L	19,012,377 – 19,012,478	- - - intron="intron;ID=intron_CG11614:1_CG11614:2;Name=nkd-in;Parent=FBtr0075039;parent_type=mRNA" - - - -	10964	19,012,377 – 19,012,478	+	12	115	75.81	-2.17	0.52	0.970678
7964	dm3.chr3L	19,012,570 – 19,012,690	- - - intron="intron;ID=intron_CG11614:1_CG11614:2;Name=nkd-in;Parent=FBtr0075039;parent_type=mRNA" - - - -	10965	19,012,570 – 19,012,690	+	12	120	83.89	-1.03	0.92	0.849913
7965	dm3.chr3L	19,019,371 – 19,019,477	- - - intron="intron;ID=intron_CG11614:1_CG11614:2;Name=nkd-in;Parent=FBtr0075039;parent_type=mRNA" - - - -	10966	19,019,371 – 19,019,477	+	12	117	82.27	-2.07	0.47	0.570718
7966	dm3.chr3L	19,026,251 – 19,026,354	- - - intron="intron;ID=intron_CG11614:1_CG11614:2;Name=nkd-in;Parent=FBtr0075039;parent_type=mRNA" - - - -	10967	19,026,251 – 19,026,348	-	6	100	81.84	-1.72	0.63	0.652327
7966	dm3.chr3L	19,026,251 – 19,026,354		10968	19,026,257 – 19,026,354	-	6	100	80.54	-1.45	0.64	0.555162
7967	dm3.chr3L	19,035,925 – 19,036,015	- - - intron="intron;ID=intron_CG11614:1_CG11614:2;Name=nkd-in;Parent=FBtr0075039;parent_type=mRNA" - - - -	10969	19,035,925 – 19,036,015	+	9	99	79.28	-2.64	0.79	0.996580
7968	dm3.chr3L	19,037,884 – 19,037,979	- - - - - - - -	10970	19,037,884 – 19,037,979	-	9	112	78.35	-1.90	0.61	0.912436
7969	dm3.chr3L	19,045,114 – 19,045,234	- - - - - - - -	10971	19,045,114 – 19,045,234	-	5	120	83.67	-1.58	0.75	0.713419
7970	dm3.chr3L	19,053,125 – 19,053,220	- - - - - - - -	10972	19,053,125 – 19,053,220	-	3	95	97.89	-1.86	1.00	0.961528
7971	dm3.chr3L	19,066,410 – 19,066,479	- - - - - - - -	10973	19,066,410 – 19,066,479	+	6	69	67.89	-0.61	0.57	0.519786
7972	dm3.chr3L	19,068,014 – 19,068,119	- - - - - - - -	10974	19,068,014 – 19,068,119	+	5	119	82.24	-1.97	0.64	0.714205
7973	dm3.chr3L	19,069,216 – 19,069,326	- - - - - - - -	10975	19,069,216 – 19,069,326	-	6	110	80.61	-2.02	0.51	0.624933
7974	dm3.chr3L	19,071,507 – 19,071,627	- - - - - - - -	10976	19,071,507 – 19,071,627	+	4	120	77.48	-1.71	0.65	0.739568
7975	dm3.chr3L	19,077,228 – 19,077,338	- - - - - - - -	10977	19,077,228 – 19,077,338	+	6	115	69.46	-1.13	0.52	0.741604
7975	dm3.chr3L	19,077,228 – 19,077,338	- - - - - - - -	10978	19,077,228 – 19,077,338	-	6	115	69.46	-2.19	0.60	0.996917
7976	dm3.chr3L	19,079,589 – 19,079,654	- - - - - - - -	10979	19,079,589 – 19,079,654	+	5	70	88.15	-2.77	0.72	0.958669
7976	dm3.chr3L	19,079,589 – 19,079,654	- - - - - - - -	10980	19,079,589 – 19,079,654	-	5	70	88.15	-2.59	0.79	0.969027
7977	dm3.chr3L	19,081,374 – 19,081,482	- - - - - - - -	10981	19,081,374 – 19,081,482	+	7	120	64.24	-2.30	0.41	0.991008
7978	dm3.chr3L	19,088,148 – 19,088,219	- - - - - - - -	10982	19,088,148 – 19,088,219	-	7	82	74.86	-1.82	0.54	0.881826
7979	dm3.chr3L	19,094,084 – 19,094,222	- - - - - - - -	10983	19,094,084 – 19,094,191	+	6	109	91.21	-2.05	0.82	0.854590
				10984	19,094,084 – 19,094,191	-	6	109	91.21	-2.55	0.76	0.924316
				10985	19,094,123 – 19,094,222	+	5	101	84.00	-1.74	0.77	0.810997
7980	dm3.chr3L	19,118,066 – 19,118,189	- - - - - - - -	10986	19,118,066 – 19,118,189	+	10	146	69.01	-1.56	0.46	0.931020
7980	dm3.chr3L	19,118,066 – 19,118,189	- - - - - - - -	10987	19,118,066 – 19,118,189	-	10	146	69.01	-1.78	0.52	0.987545
7981	dm3.chr3L	19,128,299 – 19,128,419	- - - - - - - -	10988	19,128,299 – 19,128,419	+	9	127	65.30	-1.34	0.34	0.565921
7982	dm3.chr3L	19,140,165 – 19,140,234	- - - - - - - -	10989	19,140,165 – 19,140,234	+	5	73	91.23	-1.06	0.94	0.624676
7983	dm3.chr3L	19,166,554 – 19,166,644	- - - - - - - -	10990	19,166,554 – 19,166,644	+	6	90	79.96	-0.87	0.87	0.718828
7984	dm3.chr3L	19,170,398 – 19,170,489	- - - - - - - -	10991	19,170,398 – 19,170,489	-	12	120	83.94	-1.72	0.63	0.500000
7985	dm3.chr3L	19,176,103 – 19,176,207	- - - - - - - -	10992	19,176,103 – 19,176,207	+	6	104	84.70	-1.96	0.71	0.858092
7986	dm3.chr3L	19,181,772 – 19,181,867	- - - intron="intron;ID=intron_FBgn0016797:7_FBgn0016797:6;Name=fz2-in;Parent=FBtr0299586;parent_type=mRNA" - - - -	10993	19,181,772 – 19,181,867	+	7	107	89.00	-1.51	0.82	0.633807
7987	dm3.chr3L	19,182,151 – 19,182,249	- - - intron="intron;ID=intron_FBgn0016797:7_FBgn0016797:6;Name=fz2-in;Parent=FBtr0299586;parent_type=mRNA" - - - -	10994	19,182,151 – 19,182,249	-	7	98	76.09	-1.22	0.60	0.669622
7988	dm3.chr3L	19,211,470 – 19,211,578	- - - intron="intron;ID=intron_FBgn0016797:9_FBgn0016797:8;Name=fz2-in;Parent=FBtr0299586;parent_type=mRNA" - - - -	10995	19,211,470 – 19,211,578	+	5	115	76.56	-1.97	0.88	0.988122
7989	dm3.chr3L	19,212,687 – 19,212,778	- - - intron="intron;ID=intron_FBgn0016797:9_FBgn0016797:8;Name=fz2-in;Parent=FBtr0299586;parent_type=mRNA" - - - -	10996	19,212,687 – 19,212,778	+	9	95	80.39	-1.38	0.60	0.500000
7990	dm3.chr3L	19,213,447 – 19,213,569	- - - intron="intron;ID=intron_FBgn0016797:9_FBgn0016797:8;Name=fz2-in;Parent=FBtr0299586;parent_type=mRNA" - - - -	10997	19,213,447 – 19,213,544	+	12	113	77.54	-2.13	0.58	0.977820
				10998	19,213,468 – 19,213,569	+	9	105	84.14	-2.48	0.67	0.973961
				10999	19,213,468 – 19,213,569	-	9	105	84.14	-1.27	0.74	0.559709
7991	dm3.chr3L	19,231,115 – 19,231,205	- - - - - - - -	11000	19,231,115 – 19,231,205	+	6	117	79.27	-1.78	0.62	0.642848
7992	dm3.chr3L	19,236,243 – 19,236,342	- - - - - - - -	11001	19,236,243 – 19,236,342	-	3	107	74.18	-1.04	0.78	0.529201
7993	dm3.chr3L	19,278,617 – 19,278,708	- - - intron="intron;ID=intron_CG9619:1_CG9619:2;Name=CG9619-in;Parent=FBtr0075014;parent_type=mRNA" - - - -	11002	19,278,617 – 19,278,708	-	6	91	69.81	-0.84	0.67	0.847489
7994	dm3.chr3L	19,279,658 – 19,279,750	- - - intron="intron;ID=intron_CG9619:1_CG9619:2;Name=CG9619-in;Parent=FBtr0075014;parent_type=mRNA" - - - -	11003	19,279,658 – 19,279,750	+	10	108	70.09	-1.44	0.47	0.895307
7995	dm3.chr3L	19,282,339 – 19,282,445	- - - - - - - -	11004	19,282,339 – 19,282,445	-	7	116	75.82	-2.00	0.50	0.830437
7996	dm3.chr3L	19,302,270 – 19,302,386	- - - intron="intron;ID=intron_FBgn0003089:34_FBgn0003089:27;Name=pip-in;Parent=FBtr0075004;parent_type=mRNA" - - - -	11005	19,302,270 – 19,302,386	-	3	116	77.87	-1.10	0.82	0.576225
7997	dm3.chr3L	19,309,098 – 19,309,249	- - - intron="intron;ID=intron_FBgn0003089:35_FBgn0003089:34;Name=pip-in;Parent=FBtr0075012,FBtr0075013,FBtr0075003,FBtr0075004,FBtr0075005,FBtr0075006,FBtr0075007,FBtr0075008,FBtr0075009,FBtr0075010,FBtr0075011,FBtr0300340;parent_type=mRNA" - - - -	11006	19,309,098 – 19,309,215	+	6	120	75.80	-2.64	0.47	0.979026
7997	dm3.chr3L	19,309,098 – 19,309,249		11007	19,309,136 – 19,309,249	+	10	120	64.95	-1.63	0.30	0.603136
7998	dm3.chr3L	19,314,555 – 19,314,618	- - - intron="intron;ID=intron_FBgn0003089:36_FBgn0003089:35;Name=pip-in;Parent=FBtr0075012,FBtr0075013,FBtr0075003,FBtr0075004,FBtr0075005,FBtr0075006,FBtr0075007,FBtr0075008,FBtr0075009,FBtr0075010,FBtr0075011,FBtr0300340;parent_type=mRNA" - - - -	11008	19,314,555 – 19,314,618	-	3	63	93.65	-0.81	0.99	0.578090
7999	dm3.chr3L	19,316,602 – 19,316,715	- - - intron="intron;ID=intron_FBgn0003089:36_FBgn0003089:35;Name=pip-in;Parent=FBtr0075012,FBtr0075013,FBtr0075003,FBtr0075004,FBtr0075005,FBtr0075006,FBtr0075007,FBtr0075008,FBtr0075009,FBtr0075010,FBtr0075011,FBtr0300340;parent_type=mRNA" - - - -	11009	19,316,602 – 19,316,715	+	8	119	80.20	-1.79	0.68	0.877933
8000	dm3.chr3L	19,322,628 – 19,322,701	- - - intron="intron;ID=intron_FBgn0003089:36_FBgn0003089:35;Name=pip-in;Parent=FBtr0075012,FBtr0075013,FBtr0075003,FBtr0075004,FBtr0075005,FBtr0075006,FBtr0075007,FBtr0075008,FBtr0075009,FBtr0075010,FBtr0075011,FBtr0300340;parent_type=mRNA" - - - -	11010	19,322,628 – 19,322,701	+	11	77	86.47	-2.69	0.88	0.995274
8000	dm3.chr3L	19,322,628 – 19,322,701		11011	19,322,628 – 19,322,701	-	11	77	86.47	-1.54	0.81	0.821418
8001	dm3.chr3L	19,333,070 – 19,333,162	- - - - - - - -	11012	19,333,070 – 19,333,162	+	6	93	76.38	-1.51	0.67	0.912445
8002	dm3.chr3L	19,342,601 – 19,342,700	- - - intron="intron;ID=intron_FBgn0052206:4_FBgn0052206:3;Name=CG32206-in;Parent=FBtr0089796;parent_type=mRNA" - - - -	11013	19,342,601 – 19,342,700	+	12	120	82.75	-1.37	0.75	0.695558
8003	dm3.chr3L	19,344,628 – 19,344,721	- - - intron="intron;ID=intron_FBgn0052206:5_FBgn0052206:4;Name=CG32206-in;Parent=FBtr0089796;parent_type=mRNA" - - - -	11014	19,344,628 – 19,344,721	+	10	111	73.91	-1.93	0.56	0.978198
8004	dm3.chr3L	19,348,505 – 19,348,602	- - CDS="CDS;ID=CDS_FBgn0052206:5_362;Name=CG32206-cds;Parent=FBtr0089796;parent_type=mRNA" - - - - -	11015	19,348,505 – 19,348,602	+	14	112	85.79	-1.51	0.69	0.562622
8005	dm3.chr3L	19,361,824 – 19,361,914	- - - intron="intron;ID=intron_FBgn0052206:7_FBgn0052206:6;Name=CG32206-in;Parent=FBtr0089796;parent_type=mRNA" - - - -	11016	19,361,824 – 19,361,914	+	8	108	75.43	-1.72	0.52	0.726621
8006	dm3.chr3L	19,379,603 – 19,379,728	- - - intron="intron;ID=intron_FBgn0052206:14_FBgn0052206:13;Name=CG32206-in;Parent=FBtr0089796;parent_type=mRNA" - - - -	11017	19,379,603 – 19,379,678	+	4	91	60.92	-1.46	0.43	0.838299
8006	dm3.chr3L	19,379,603 – 19,379,728		11018	19,379,678 – 19,379,728	+	5	50	88.40	-1.79	0.83	0.833588
8007	dm3.chr3L	19,383,634 – 19,383,739	- - - - - - - -	11019	19,383,634 – 19,383,739	+	12	117	85.74	-2.10	0.59	0.600553
8008	dm3.chr3L	19,390,015 – 19,390,065	- - - - - - - -	11020	19,390,015 – 19,390,065	+	5	50	80.80	-2.18	0.54	0.694368
8009	dm3.chr3L	19,413,914 – 19,414,006	- - - - - - - -	11021	19,413,914 – 19,414,006	+	9	102	81.04	-1.55	0.74	0.896394
8009	dm3.chr3L	19,413,914 – 19,414,006	- - - - - - - -	11022	19,413,914 – 19,414,006	-	9	102	81.04	-1.33	0.73	0.781624
8010	dm3.chr3L	19,417,723 – 19,417,777	- - - - - - - -	11023	19,417,723 – 19,417,777	-	3	55	79.88	-1.23	0.80	0.527839
8011	dm3.chr3L	19,423,346 – 19,423,397	- - - - - - - -	11024	19,423,346 – 19,423,397	-	5	56	89.43	-1.34	0.86	0.547533
8012	dm3.chr3L	19,426,243 – 19,426,400	- - - - - - - -	11025	19,426,243 – 19,426,400	+	8	171	65.14	-2.73	0.25	0.952338
8013	dm3.chr3L	19,428,907 – 19,429,001	- - - - - - - -	11026	19,428,907 – 19,429,001	-	9	117	70.54	-3.32	0.23	0.950583
8014	dm3.chr3L	19,435,638 – 19,435,744	- - - intron="intron;ID=intron_FBgn0053062:4_FBgn0053062:2;Name=CG33062-in;Parent=FBtr0302886;parent_type=mRNA" - - - -	11027	19,435,638 – 19,435,744	-	12	115	75.66	-1.63	0.54	0.909487
8015	dm3.chr3L	19,435,806 – 19,436,032	- - - intron="intron;ID=intron_FBgn0053062:4_FBgn0053062:2;Name=CG33062-in;Parent=FBtr0302886;parent_type=mRNA" - - - -	11028	19,435,806 – 19,435,896	-	8	101	67.83	-1.14	0.47	0.816946
				11029	19,435,829 – 19,435,920	-	10	105	71.06	-1.55	0.41	0.661573
				11030	19,435,832 – 19,435,923	-	9	92	75.59	-1.71	0.51	0.849931
				11031	19,435,923 – 19,436,032	+	9	128	71.71	-2.28	0.57	0.995369
				11032	19,435,923 – 19,436,032	-	9	128	71.71	-1.54	0.43	0.630418
8016	dm3.chr3L	19,450,169 – 19,450,282	- - - - - - - -	11033	19,450,169 – 19,450,282	-	8	117	65.75	-0.68	0.49	0.615215
8017	dm3.chr3L	19,455,932 – 19,456,072	- - - - - - - -	11034	19,455,932 – 19,456,072	-	11	159	73.57	-1.50	0.59	0.962252
8018	dm3.chr3L	19,475,674 – 19,475,724	- - - - - - - -	11035	19,475,674 – 19,475,724	+	4	50	85.67	-0.74	0.98	0.690342
8019	dm3.chr3L	19,482,488 – 19,482,632	- - - - - - - -	11036	19,482,488 – 19,482,632	+	5	144	68.92	-2.06	0.43	0.956775
8019	dm3.chr3L	19,482,488 – 19,482,632	- - - - - - - -	11037	19,482,488 – 19,482,632	-	5	144	68.92	-1.47	0.42	0.659743
8020	dm3.chr3L	19,487,627 – 19,487,719	- - - intron="intron;ID=intron_FBgn0036875:5_FBgn0036875:4;Name=CG9449-in;Parent=FBtr0290043,FBtr0290044,FBtr0273417;parent_type=mRNA" - - - -	11038	19,487,627 – 19,487,719	+	6	98	91.04	-1.68	0.80	0.543956
8021	dm3.chr3L	19,509,389 – 19,509,487	- - - - - - - -	11039	19,509,389 – 19,509,487	+	7	101	74.46	-1.54	0.57	0.791933
8022	dm3.chr3L	19,514,504 – 19,514,638	- - - intron="intron;ID=intron_FBgn0036880:1_FBgn0036880:2;Name=Cpr76Bc-in;Parent=FBtr0113180;parent_type=mRNA" - - - -	11040	19,514,504 – 19,514,638	+	10	139	57.14	-1.75	0.34	0.985313
8022	dm3.chr3L	19,514,504 – 19,514,638		11041	19,514,504 – 19,514,638	-	10	139	57.14	-1.84	0.33	0.986951
8023	dm3.chr3L	19,525,787 – 19,525,881	- - - - - - - -	11042	19,525,787 – 19,525,881	+	8	98	86.83	-1.82	0.72	0.747277
8023	dm3.chr3L	19,525,787 – 19,525,881	- - - - - - - -	11043	19,525,787 – 19,525,881	-	8	98	86.83	-1.93	0.82	0.938294
8024	dm3.chr3L	19,532,963 – 19,533,058	- - CDS="CDS;ID=CDS_FBgn0036882:1_295;Name=CG9279-cds;Parent=FBtr0074976;parent_type=mRNA" - - - - -	11044	19,532,963 – 19,533,058	+	13	123	71.68	-2.05	0.41	0.887935
8025	dm3.chr3L	19,542,591 – 19,542,711	- - CDS="CDS;ID=CDS_CG32210:5_454;Name=l(3)76BDr-cds;Parent=FBtr0074974;parent_type=mRNA" - - - - -	11045	19,542,591 – 19,542,711	-	13	120	78.26	-1.61	0.45	0.578896
8026	dm3.chr3L	19,553,087 – 19,553,180	- - - - - - - -	11046	19,553,087 – 19,553,180	+	9	95	78.99	-1.31	0.66	0.718058
8027	dm3.chr3L	19,555,380 – 19,555,504	- - - - - - - -	11047	19,555,380 – 19,555,475	-	5	95	96.42	-1.86	0.88	0.746148
8027	dm3.chr3L	19,555,380 – 19,555,504	- - - - - - - -	11048	19,555,406 – 19,555,504	-	5	98	98.16	-1.78	0.93	0.826358
8028	dm3.chr3L	19,557,544 – 19,557,635	- - - - - - - -	11049	19,557,544 – 19,557,635	-	7	97	69.34	-1.69	0.53	0.948592
8029	dm3.chr3L	19,558,233 – 19,558,321	FBnoncoding="pre_miRNA;ID=FBtr0304196;Name=mir-9a-RM;Parent=FBgn0262373;Alias=CR42891-RM;Dbxref=FlyBase_Annotation_IDs:CR42891-RM,miRBase:MI0000129" - - - "Rfam_10.0=RF00237;mir-9;AAPU01011594.1/225819-225879\|1.4e-27" "Noncode_2.0=n178691_u177789_NW_045815_miRNA_Anopheles\|1.9e-14" "unique_Noncode_2.0=u177789_miRNA_Anopheles\|1.7e-14" "mirBase_v16=dya-mir-9a-2\|1.2e-37"	11050	19,558,233 – 19,558,321	+	15	105	86.26	-3.59	0.76	0.998537
8029	dm3.chr3L	19,558,233 – 19,558,321		11051	19,558,233 – 19,558,321	-	15	105	86.26	-2.89	0.82	0.995658
8030	dm3.chr3L	19,560,141 – 19,560,236	- - - - - - - -	11052	19,560,141 – 19,560,236	+	11	111	68.48	-0.99	0.58	0.904935
8031	dm3.chr3L	19,563,525 – 19,563,580	- - - intron="intron;ID=intron_FBgn0005564:4_FBgn0005564:2;Name=Shal-in;Parent=FBtr0112853;parent_type=mRNA" - - - -	11053	19,563,525 – 19,563,580	-	7	71	72.96	-1.09	0.63	0.591928
8032	dm3.chr3L	19,565,149 – 19,565,245	- - CDS="CDS;ID=CDS_FBgn0005564:3_296;Name=Shal-cds;Parent=FBtr0074973;parent_type=mRNA" intron="intron;ID=intron_FBgn0005564:4_FBgn0005564:2;Name=Shal-in;Parent=FBtr0112853;parent_type=mRNA" - - - -	11054	19,565,149 – 19,565,245	-	11	101	59.61	0.30	0.56	0.509555
8033	dm3.chr3L	19,570,111 – 19,570,167	- - - intron="intron;ID=intron_FBgn0005564:8_FBgn0005564:7;Name=Shal-in;Parent=FBtr0074973,FBtr0112853;parent_type=mRNA" - - - -	11055	19,570,111 – 19,570,167	+	6	56	64.01	-1.85	0.38	0.953579
8034	dm3.chr3L	19,571,168 – 19,571,276	- - - intron="intron;ID=intron_FBgn0005564:8_FBgn0005564:7;Name=Shal-in;Parent=FBtr0074973,FBtr0112853;parent_type=mRNA" - - - -	11056	19,571,168 – 19,571,276	-	5	109	76.89	-1.50	0.58	0.509017
8035	dm3.chr3L	19,608,499 – 19,608,602	- - CDS="CDS;ID=CDS_FBgn0260655:3_408;Name=l(3)76BDm-cds;Parent=FBtr0074966;parent_type=mRNA" - - - - -	11057	19,608,499 – 19,608,602	-	12	103	69.06	-1.42	0.33	0.568098
8036	dm3.chr3L	19,619,953 – 19,620,045	- - - - - - - -	11058	19,619,953 – 19,620,045	+	11	104	63.18	-0.83	0.39	0.667073
8037	dm3.chr3L	19,648,387 – 19,648,494	- - - intron="intron;ID=intron_FBgn0036899:9_FBgn0036899:8;Name=tey-in;Parent=FBtr0074960,FBtr0273407;parent_type=mRNA" - - - -	11059	19,648,387 – 19,648,486	+	8	110	81.89	-1.81	0.67	0.866562
8037	dm3.chr3L	19,648,387 – 19,648,494		11060	19,648,390 – 19,648,494	+	8	111	82.79	-2.47	0.63	0.967630
8038	dm3.chr3L	19,650,000 – 19,650,090	- - CDS="CDS;ID=CDS_FBgn0036899:9_362;Name=tey-cds;Parent=FBtr0074960,FBtr0273407;parent_type=mRNA" - - - - -	11061	19,650,000 – 19,650,090	-	13	102	71.98	-0.71	0.58	0.772546
8039	dm3.chr3L	19,667,849 – 19,668,043	- - - - - - - -	11062	19,667,849 – 19,667,914	-	6	82	66.52	-1.43	0.83	0.993383
				11063	19,667,914 – 19,668,043	+	8	132	85.01	-2.30	0.81	0.981817
				11064	19,667,914 – 19,668,043	-	8	132	85.01	-2.47	0.85	0.991388
8040	dm3.chr3L	19,673,073 – 19,673,172	- - - - - - - -	11065	19,673,073 – 19,673,172	+	12	112	66.91	-1.27	0.41	0.773601
8041	dm3.chr3L	19,682,520 – 19,682,604	- - - intron="intron;ID=intron_CG8770:5_CG8770:6;Name=Gbeta76C-in;Parent=FBtr0074949;parent_type=mRNA" - - - -	11066	19,682,520 – 19,682,604	-	6	96	69.60	-1.27	0.48	0.637555
8042	dm3.chr3L	19,711,209 – 19,711,301	- - - - - - - -	11067	19,711,209 – 19,711,301	+	12	112	67.55	-0.87	0.56	0.904689
8042	dm3.chr3L	19,711,209 – 19,711,301	- - - - - - - -	11068	19,711,209 – 19,711,301	-	12	112	67.55	-2.89	0.44	0.999272
8043	dm3.chr3L	19,719,436 – 19,719,556	- - CDS="CDS;ID=CDS_FBgn0261360:14_428;Name=CG42637-cds;Parent=FBtr0302277,FBtr0302278,FBtr0302279;parent_type=mRNA" - - - - -	11069	19,719,436 – 19,719,556	-	15	120	81.18	-2.35	0.40	0.781048
8044	dm3.chr3L	19,719,742 – 19,719,840	- - CDS="CDS;ID=CDS_FBgn0261360:15_428;Name=CG42637-cds;Parent=FBtr0302277,FBtr0302278,FBtr0302279;parent_type=mRNA" - - - - -	11070	19,719,742 – 19,719,840	-	14	101	82.86	-1.37	0.66	0.662230
8045	dm3.chr3L	19,719,875 – 19,719,987	- - - - - - - -	11071	19,719,875 – 19,719,987	+	13	115	84.79	-1.07	0.77	0.520322
8046	dm3.chr3L	19,742,626 – 19,742,731	- - - - - - - -	11072	19,742,626 – 19,742,719	+	12	113	66.48	-0.78	0.58	0.917248
				11073	19,742,626 – 19,742,719	-	12	113	66.48	-2.61	0.46	0.999006
				11074	19,742,638 – 19,742,731	-	12	113	64.93	-1.42	0.45	0.950466
8047	dm3.chr3L	19,750,851 – 19,750,971	- - CDS="CDS;ID=CDS_FBgn0261359:14_315;Name=Gyc76C-cds;Parent=FBtr0302281;parent_type=mRNA" - - - - -	11075	19,750,851 – 19,750,971	-	15	120	81.18	-2.35	0.40	0.781048
8048	dm3.chr3L	19,751,157 – 19,751,255	- - CDS="CDS;ID=CDS_FBgn0261359:15_279;Name=Gyc76C-cds;Parent=FBtr0302280,FBtr0302282;parent_type=mRNA" - - - - -	11076	19,751,157 – 19,751,255	-	14	101	83.00	-1.37	0.66	0.647683
8049	dm3.chr3L	19,751,290 – 19,751,402	- - - - - - - -	11077	19,751,290 – 19,751,402	+	13	115	84.79	-1.07	0.77	0.520322
8050	dm3.chr3L	19,758,586 – 19,758,689	- - - intron="intron;ID=intron_FBgn0261359:16_FBgn0261359:15;Name=Gyc76C-in;Parent=FBtr0302280,FBtr0302281,FBtr0302282;parent_type=mRNA" - - - -	11078	19,758,586 – 19,758,689	-	5	103	69.84	-1.17	0.53	0.633188
8051	dm3.chr3L	19,777,122 – 19,777,312	- - - intron="intron;ID=intron_FBgn0261360:17_FBgn0261360:16;Name=CG42637-in;Parent=FBtr0302277,FBtr0302278,FBtr0302279;parent_type=mRNA" - - - -	11079	19,777,122 – 19,777,239	+	5	118	82.29	-1.90	0.76	0.905363
				11080	19,777,162 – 19,777,279	+	6	118	64.73	-1.71	0.35	0.889805
				11081	19,777,201 – 19,777,312	+	6	120	62.35	-1.57	0.28	0.524689
8052	dm3.chr3L	19,780,889 – 19,780,962	- - - intron="intron;ID=intron_FBgn0261360:17_FBgn0261360:16;Name=CG42637-in;Parent=FBtr0302277,FBtr0302278,FBtr0302279;parent_type=mRNA" - - - -	11082	19,780,889 – 19,780,962	+	5	73	97.26	-0.79	1.00	0.553698
8053	dm3.chr3L	19,796,710 – 19,796,762	- - - - - - - -	11083	19,796,710 – 19,796,762	-	6	52	87.18	-1.74	0.78	0.780922
8054	dm3.chr3L	19,813,528 – 19,813,589	- - - intron="intron;ID=intron_CG8567:2_CG8567:3;Name=Deaf1-in;Parent=FBtr0074882;parent_type=mRNA" - - - -	11084	19,813,528 – 19,813,589	+	3	69	61.08	-3.16	0.21	0.845905
8054	dm3.chr3L	19,813,528 – 19,813,589		11085	19,813,528 – 19,813,589	-	3	69	61.08	-2.56	0.35	0.938187
8055	dm3.chr3L	19,821,582 – 19,821,683	- - CDS="CDS;ID=CDS_CG8567:3_335;Name=Deaf1-cds;Parent=FBtr0074882;parent_type=mRNA" - - - - -	11086	19,821,582 – 19,821,683	+	11	115	68.32	-1.34	0.40	0.792129
8056	dm3.chr3L	19,836,531 – 19,836,640	- - - - - - - -	11087	19,836,531 – 19,836,640	-	6	109	84.46	-1.62	0.88	0.936941
8057	dm3.chr3L	19,850,295 – 19,850,368	- - - intron="intron;ID=intron_FBgn0020389:7_FBgn0020389:8;Name=Papss-in;Parent=FBtr0111108;parent_type=mRNA" - - - -	11088	19,850,295 – 19,850,368	+	3	73	57.35	-0.97	0.76	0.960556
8057	dm3.chr3L	19,850,295 – 19,850,368		11089	19,850,295 – 19,850,368	-	3	73	57.35	-1.30	0.56	0.929486
8058	dm3.chr3L	19,860,388 – 19,860,473	- - - - - - - -	11090	19,860,388 – 19,860,473	-	3	85	78.04	-1.77	0.65	0.671802
8059	dm3.chr3L	19,865,819 – 19,865,912	- - - - - - - -	11091	19,865,819 – 19,865,912	-	8	117	70.92	-2.70	0.33	0.904022
8060	dm3.chr3L	19,883,225 – 19,883,339	- - - intron="intron;ID=intron_FBgn0013591:8_FBgn0013591:7;Name=Mi-2-in;Parent=FBtr0074919,FBtr0100394,FBtr0302046;parent_type=mRNA" - - - -	11092	19,883,225 – 19,883,339	+	5	143	63.12	-2.35	0.35	0.865123
8060	dm3.chr3L	19,883,225 – 19,883,339		11093	19,883,225 – 19,883,339	-	5	143	63.12	-2.20	0.31	0.594641
8061	dm3.chr3L	19,895,773 – 19,895,875	- - - intron="intron;ID=intron_FBgn0014037:6_FBgn0014037:5;Name=Su(Tpl)-in;Parent=FBtr0074920;parent_type=mRNA" - - - -	11094	19,895,773 – 19,895,875	-	5	104	91.26	-2.33	0.97	0.989800
8062	dm3.chr3L	19,896,702 – 19,896,801	- - - intron="intron;ID=intron_FBgn0014037:6_FBgn0014037:5;Name=Su(Tpl)-in;Parent=FBtr0074920;parent_type=mRNA" - - - -	11095	19,896,702 – 19,896,801	+	6	119	81.05	-2.29	0.57	0.848212
8062	dm3.chr3L	19,896,702 – 19,896,801		11096	19,896,702 – 19,896,801	-	6	119	81.05	-2.07	0.68	0.913070
8063	dm3.chr3L	19,919,219 – 19,919,374	- - CDS="CDS;ID=CDS_CG7809:2_334;Name=Grasp65-cds;Parent=FBtr0074895;parent_type=mRNA" - - - - -	11097	19,919,219 – 19,919,374	+	12	173	59.09	-2.13	0.15	0.801296
8064	dm3.chr3L	19,927,953 – 19,928,050	- - - - - - - -	11098	19,927,953 – 19,928,050	+	7	106	72.78	-1.14	0.53	0.654485
8065	dm3.chr3L	19,935,157 – 19,935,248	- - - intron="intron;ID=intron_FBgn0004852:1_FBgn0004852:2;Name=Ac76E-in;Parent=FBtr0074897,FBtr0304746;parent_type=mRNA" - - - -	11099	19,935,157 – 19,935,248	-	7	103	81.07	-1.83	0.64	0.833457
8066	dm3.chr3L	19,941,396 – 19,941,491	- - - intron="intron;ID=intron_FBgn0004852:1_FBgn0004852:2;Name=Ac76E-in;Parent=FBtr0074897,FBtr0304746;parent_type=mRNA" - - - -	11100	19,941,396 – 19,941,491	+	8	103	63.68	-1.65	0.29	0.671170
8067	dm3.chr3L	19,945,391 – 19,945,497	- - CDS="CDS;ID=CDS_FBgn0053710:1_408;Name=CG33710-cds;Parent=FBtr0091698;parent_type=mRNA" - - - - -	11101	19,945,391 – 19,945,497	+	6	106	81.64	-1.60	0.69	0.770582
8068	dm3.chr3L	19,949,878 – 19,949,985	- - - - - - - -	11102	19,949,878 – 19,949,985	+	12	117	82.52	-1.81	0.64	0.840185
8069	dm3.chr3L	19,988,719 – 19,988,836	- - CDS="CDS;ID=CDS_FBgn0036926:6_323;Name=CG7646-cds;Parent=FBtr0074901;parent_type=mRNA" - - - - -	11103	19,988,719 – 19,988,821	+	14	118	75.61	-1.28	0.49	0.580039
				11104	19,988,746 – 19,988,836	+	13	90	86.31	-1.45	0.72	0.572249
				11105	19,988,746 – 19,988,836	-	13	90	86.31	-1.75	0.63	0.540366
8070	dm3.chr3L	19,998,564 – 19,998,673	- - - - - - - -	11106	19,998,564 – 19,998,673	-	7	118	68.46	-1.35	0.38	0.519719
8071	dm3.chr3L	20,032,610 – 20,032,704	- - - - - - - -	11107	20,032,610 – 20,032,704	+	4	96	75.41	-1.80	0.52	0.500000
8072	dm3.chr3L	20,034,762 – 20,034,860	- - - - - - - -	11108	20,034,762 – 20,034,860	+	3	98	81.29	-1.97	0.62	0.500000
8073	dm3.chr3L	20,040,873 – 20,041,010	- - - - - - - -	11109	20,040,873 – 20,040,984	-	7	113	64.70	-1.35	0.39	0.841098
				11110	20,040,907 – 20,041,010	+	7	106	65.07	-2.04	0.25	0.652944
				11111	20,040,907 – 20,041,010	-	7	106	65.07	-1.61	0.48	0.983635
8074	dm3.chr3L	20,044,534 – 20,044,635	- - - - - - - -	11112	20,044,534 – 20,044,635	-	9	114	70.12	-2.48	0.24	0.761817
8075	dm3.chr3L	20,060,303 – 20,060,440	- - - intron="intron;ID=intron_CG7395:2_CG7395:3;Name=sNPF-R-in;Parent=FBtr0074871;parent_type=mRNA" - - - -	11113	20,060,303 – 20,060,401	+	7	111	69.26	-1.02	0.51	0.744494
				11114	20,060,303 – 20,060,401	-	7	111	69.26	-0.66	0.59	0.712553
				11115	20,060,343 – 20,060,440	-	6	100	75.58	-1.21	0.72	0.830179
8076	dm3.chr3L	20,082,345 – 20,082,421	- - - - - - - -	11116	20,082,345 – 20,082,421	-	6	76	67.63	-1.40	0.52	0.965187
8077	dm3.chr3L	20,092,404 – 20,092,533	- - CDS="CDS;ID=CDS_CG14186:4_320;Name=CG14186-cds;Parent=FBtr0074870;parent_type=mRNA" - - - - -	11117	20,092,404 – 20,092,524	+	13	120	82.30	-1.78	0.53	0.692870
8077	dm3.chr3L	20,092,404 – 20,092,533		11118	20,092,414 – 20,092,533	+	13	119	79.93	-1.69	0.50	0.725711
8078	dm3.chr3L	20,093,948 – 20,094,075	- - CDS="CDS;ID=CDS_CG14186:3_320;Name=CG14186-cds;Parent=FBtr0074870;parent_type=mRNA" - - - - -	11119	20,093,948 – 20,094,075	-	13	128	84.90	-1.59	0.64	0.569856
8079	dm3.chr3L	20,094,380 – 20,094,479	- - CDS="CDS;ID=CDS_CG14186:2_320;Name=CG14186-cds;Parent=FBtr0074870;parent_type=mRNA" - - - - -	11120	20,094,380 – 20,094,479	+	8	111	69.81	-1.04	0.62	0.940521
8079	dm3.chr3L	20,094,380 – 20,094,479		11121	20,094,380 – 20,094,479	-	8	111	69.81	-0.61	0.55	0.544476
8080	dm3.chr3L	20,097,291 – 20,097,422	- - - - - - - -	11122	20,097,291 – 20,097,398	-	7	118	64.45	-1.36	0.40	0.799934
8080	dm3.chr3L	20,097,291 – 20,097,422	- - - - - - - -	11123	20,097,322 – 20,097,422	-	7	116	61.84	-1.35	0.46	0.945994
8081	dm3.chr3L	20,098,320 – 20,098,414	- - - - - - - -	11124	20,098,320 – 20,098,414	+	4	109	70.89	-2.02	0.46	0.765280
8082	dm3.chr3L	20,120,959 – 20,121,061	- - - - - - - -	11125	20,120,959 – 20,121,061	-	6	119	77.29	-1.54	0.57	0.549315
8083	dm3.chr3L	20,125,399 – 20,125,519	- - CDS="CDS;ID=CDS_FBgn0036941:1_437;Name=CG7335-cds;Parent=FBtr0074865;parent_type=mRNA" - - - - -	11126	20,125,399 – 20,125,519	-	11	120	70.92	-1.93	0.26	0.532960
8084	dm3.chr3L	20,136,586 – 20,136,737	- - - - - - - -	11127	20,136,586 – 20,136,697	+	4	112	90.28	-2.04	0.85	0.889084
8084	dm3.chr3L	20,136,586 – 20,136,737	- - - - - - - -	11128	20,136,620 – 20,136,737	-	4	118	76.56	-1.74	0.75	0.894673
8085	dm3.chr3L	20,139,424 – 20,139,520	- - - - - - - -	11129	20,139,424 – 20,139,520	+	5	100	62.29	-1.53	0.37	0.774251
8085	dm3.chr3L	20,139,424 – 20,139,520	- - - - - - - -	11130	20,139,424 – 20,139,520	-	5	100	62.29	-1.42	0.38	0.735813
8086	dm3.chr3L	20,141,888 – 20,141,980	- - - - - - - -	11131	20,141,888 – 20,141,980	-	6	94	82.01	-0.97	0.88	0.754084
8087	dm3.chr3L	20,145,303 – 20,145,404	- - CDS="CDS;ID=CDS_FBgn0261556:2_296;Name=CG42674-cds;Parent=FBtr0302714,FBtr0302713;parent_type=mRNA" - - - - -	11132	20,145,303 – 20,145,404	-	14	107	80.47	-1.58	0.53	0.627360
8088	dm3.chr3L	20,149,714 – 20,149,773	- - - intron="intron;ID=intron_FBgn0261556:11_FBgn0261556:10;Name=CG42674-in;Parent=FBtr0302714,FBtr0302712;parent_type=mRNA" - - - -	11133	20,149,714 – 20,149,773	-	5	65	92.01	-0.62	0.99	0.500000
8089	dm3.chr3L	20,150,180 – 20,150,283	- - CDS="CDS;ID=CDS_FBgn0261556:11_432;Name=CG42674-cds;Parent=FBtr0302712;parent_type=mRNA" - - - - -	11134	20,150,180 – 20,150,283	+	12	112	65.65	-1.08	0.36	0.596492
8090	dm3.chr3L	20,152,396 – 20,152,484	- - - intron="intron;ID=intron_FBgn0261556:13_FBgn0261556:12;Name=CG42674-in;Parent=FBtr0302714,FBtr0302715,FBtr0302712,FBtr0302713;parent_type=mRNA" - - - -	11135	20,152,396 – 20,152,484	+	7	99	76.97	-1.51	0.55	0.620214
8091	dm3.chr3L	20,156,425 – 20,156,530	- - CDS="CDS;ID=CDS_FBgn0261556:13_432;Name=CG42674-cds;Parent=FBtr0302712;parent_type=mRNA" - - - - -	11136	20,156,425 – 20,156,530	-	9	111	72.51	-2.11	0.45	0.964265
8092	dm3.chr3L	20,159,837 – 20,159,928	- - - - - - - -	11137	20,159,837 – 20,159,928	+	4	94	82.47	-1.25	0.80	0.561782
8093	dm3.chr3L	20,162,009 – 20,162,104	- - - - - - - -	11138	20,162,009 – 20,162,104	+	7	114	72.40	-1.15	0.56	0.550134
8094	dm3.chr3L	20,162,251 – 20,162,365	- - - - - - - -	11139	20,162,251 – 20,162,365	-	5	120	76.80	-2.61	0.33	0.512138
8095	dm3.chr3L	20,163,688 – 20,163,752	- - - - - - - -	11140	20,163,688 – 20,163,752	+	9	66	90.06	-2.57	0.83	0.981425
8096	dm3.chr3L	20,166,712 – 20,166,829	- - - - - - - -	11141	20,166,712 – 20,166,829	+	3	117	76.47	-3.42	0.76	0.998115
8096	dm3.chr3L	20,166,712 – 20,166,829	- - - - - - - -	11142	20,166,712 – 20,166,829	-	3	117	76.47	-3.55	0.75	0.998458
8097	dm3.chr3L	20,174,918 – 20,175,020	- - - - - - - -	11143	20,174,918 – 20,175,020	-	5	113	77.29	-2.08	0.46	0.611036
8098	dm3.chr3L	20,189,477 – 20,189,594	- - - intron="intron;ID=intron_FBgn0261556:15_FBgn0261556:14;Name=CG42674-in;Parent=FBtr0302716;parent_type=mRNA" - - - -	11144	20,189,477 – 20,189,571	-	6	108	75.76	-2.09	0.61	0.964214
8098	dm3.chr3L	20,189,477 – 20,189,594		11145	20,189,502 – 20,189,594	-	6	104	74.84	-2.40	0.55	0.982622
8099	dm3.chr3L	20,191,553 – 20,191,626	- - - - - - - -	11146	20,191,553 – 20,191,626	+	4	84	63.54	-2.23	0.46	0.988166
8100	dm3.chr3L	20,227,397 – 20,227,517	- - CDS="CDS;ID=CDS_FBgn0036958:3_479;Name=CG17233-cds;Parent=FBtr0306327,FBtr0306328;parent_type=mRNA" - - - - -	11147	20,227,397 – 20,227,517	-	14	128	72.96	-1.04	0.51	0.808679
8101	dm3.chr3L	20,228,588 – 20,228,685	- - CDS="CDS;ID=CDS_FBgn0036958:7_425;Name=CG17233-cds;Parent=FBtr0074850,FBtr0074851;parent_type=mRNA" - - - - -	11148	20,228,588 – 20,228,685	+	12	120	78.34	-1.28	0.63	0.505437
8102	dm3.chr3L	20,229,636 – 20,229,726	- - CDS="CDS;ID=CDS_FBgn0036958:10_489;Name=CG17233-cds;Parent=FBtr0306326,FBtr0306329;parent_type=mRNA" - - - - -	11149	20,229,636 – 20,229,726	-	12	111	72.24	-2.25	0.35	0.839301
8103	dm3.chr3L	20,243,455 – 20,243,623	- - - - - - - -	11150	20,243,455 – 20,243,573	+	5	118	92.27	-2.48	0.79	0.911770
8103	dm3.chr3L	20,243,455 – 20,243,623	- - - - - - - -	11151	20,243,573 – 20,243,623	-	6	50	78.13	-1.71	0.50	0.589830
8104	dm3.chr3L	20,244,580 – 20,244,671	- - - - - - - -	11152	20,244,580 – 20,244,671	-	8	104	73.78	-2.02	0.53	0.954607
8105	dm3.chr3L	20,251,551 – 20,251,602	- - - - - - - -	11153	20,251,551 – 20,251,602	+	3	61	82.51	-1.67	0.77	0.667526
8106	dm3.chr3L	20,251,891 – 20,251,984	- - - - - - - -	11154	20,251,891 – 20,251,984	+	6	93	82.43	-2.20	0.61	0.851694
8107	dm3.chr3L	20,269,251 – 20,269,348	- - - intron="intron;ID=intron_CG32227:4_CG32227:5;Name=gogo-in;Parent=FBtr0074848;parent_type=mRNA" - - - -	11155	20,269,251 – 20,269,348	-	6	113	55.99	-1.89	0.49	0.998614
8108	dm3.chr3L	20,279,480 – 20,279,583	- - - intron="intron;ID=intron_CG32227:1_CG32227:2;Name=gogo-in;Parent=FBtr0074848;parent_type=mRNA" - - - -	11156	20,279,480 – 20,279,583	-	6	112	85.08	-2.33	0.61	0.822906
8109	dm3.chr3L	20,283,760 – 20,283,870	- - - intron="intron;ID=intron_CG32227:1_CG32227:2;Name=gogo-in;Parent=FBtr0074848;parent_type=mRNA" - - - -	11157	20,283,760 – 20,283,870	+	6	110	67.49	-1.24	0.40	0.558529
8110	dm3.chr3L	20,287,484 – 20,287,542	- - - intron="intron;ID=intron_CG32227:1_CG32227:2;Name=gogo-in;Parent=FBtr0074848;parent_type=mRNA" - - - -	11158	20,287,484 – 20,287,542	-	4	58	73.56	-1.31	0.62	0.636027
8111	dm3.chr3L	20,298,723 – 20,298,872	- - CDS="CDS;ID=CDS_FBgn0052225:3_484;Name=CG32225-cds;Parent=FBtr0074845;parent_type=mRNA" - - - - -	11159	20,298,723 – 20,298,839	+	13	120	79.38	-1.66	0.55	0.795739
				11160	20,298,723 – 20,298,839	-	13	120	79.38	-2.16	0.44	0.810456
				11161	20,298,775 – 20,298,872	+	13	114	73.96	-1.29	0.47	0.562539
8112	dm3.chr3L	20,303,628 – 20,303,751	- - - intron="intron;ID=intron_CG12306:1_CG12306:2;Name=polo-in;Parent=FBtr0074839,FBtr0100318;parent_type=mRNA" - - - -	11162	20,303,628 – 20,303,751	+	7	129	61.69	-2.76	0.21	0.924341
8113	dm3.chr3L	20,313,128 – 20,313,224	- - - - - - - -	11163	20,313,128 – 20,313,224	-	5	121	60.28	-1.17	0.46	0.832457
8114	dm3.chr3L	20,346,600 – 20,346,706	- - - - - - - -	11164	20,346,600 – 20,346,706	-	6	116	68.50	-0.97	0.51	0.629565
8115	dm3.chr3L	20,347,377 – 20,347,497	- - CDS="CDS;ID=CDS_FBgn0036975:1_348;Name=CG5618-cds;Parent=FBtr0078179,FBtr0273280;parent_type=mRNA" - - - - -	11165	20,347,377 – 20,347,497	+	12	120	74.43	-1.86	0.33	0.517570
8116	dm3.chr3L	20,375,263 – 20,375,366	- - - - - - - -	11166	20,375,263 – 20,375,366	+	6	103	80.53	-1.88	0.61	0.796534
8117	dm3.chr3L	20,380,014 – 20,380,110	- - - intron="intron;ID=intron_CG5725:28_CG5725:8;Name=fbl-in;Parent=FBtr0078187;parent_type=mRNA" - - - -	11167	20,380,014 – 20,380,110	+	5	106	61.67	-1.54	0.38	0.795870
8118	dm3.chr3L	20,382,537 – 20,382,628	- - - intron="intron;ID=intron_CG5725:8_CG5725:2;Name=fbl-in;Parent=FBtr0078186,FBtr0078188,FBtr0078189,FBtr0078187;parent_type=mRNA" - - - -	11168	20,382,537 – 20,382,628	+	5	103	58.77	-1.39	0.37	0.810392
8118	dm3.chr3L	20,382,537 – 20,382,628		11169	20,382,537 – 20,382,628	-	5	103	58.77	-1.49	0.36	0.834168
8119	dm3.chr3L	20,387,436 – 20,387,539	- - - - - - - -	11170	20,387,436 – 20,387,537	-	8	101	71.20	-1.99	0.34	0.699357
				11171	20,387,437 – 20,387,539	+	8	102	70.27	-1.80	0.35	0.659149
				11172	20,387,437 – 20,387,539	-	8	102	70.27	-1.84	0.40	0.872915
8120	dm3.chr3L	20,388,690 – 20,388,789	- - - - - - - -	11173	20,388,690 – 20,388,789	-	5	103	79.78	-2.36	0.81	0.990353
8121	dm3.chr3L	20,398,039 – 20,398,150	- - - - - - - -	11174	20,398,039 – 20,398,150	-	6	116	79.74	-1.72	0.56	0.619859
8122	dm3.chr3L	20,403,677 – 20,403,754	- - - - - - - -	11175	20,403,677 – 20,403,754	-	7	92	65.59	-3.11	0.16	0.761253
8123	dm3.chr3L	20,410,317 – 20,410,424	- - CDS="CDS;ID=CDS_CG5847:1_455;Name=zye-cds;Parent=FBtr0078191;parent_type=mRNA" - - - - -	11176	20,410,317 – 20,410,424	+	12	120	57.58	-0.96	0.33	0.573437
8124	dm3.chr3L	20,414,082 – 20,414,147	- - CDS="CDS;ID=CDS_CG5847:3_455;Name=zye-cds;Parent=FBtr0078191;parent_type=mRNA" - - - - -	11177	20,414,082 – 20,414,147	-	12	68	63.13	-1.19	0.31	0.602122
8125	dm3.chr3L	20,426,864 – 20,426,979	- - CDS="CDS;ID=CDS_FBgn0019947:5_363;Name=Psn-cds;Parent=FBtr0114517;parent_type=mRNA" - - - - -	11178	20,426,864 – 20,426,979	+	15	119	73.65	-1.27	0.55	0.940642
8126	dm3.chr3L	20,430,232 – 20,430,330	- - - intron="intron;ID=intron_CG5872:2_CG5872:3;Name=CG5872-in;Parent=FBtr0078194;parent_type=mRNA" - - - -	11179	20,430,232 – 20,430,330	+	5	121	63.59	-2.65	0.55	0.999111
8126	dm3.chr3L	20,430,232 – 20,430,330		11180	20,430,232 – 20,430,330	-	5	121	63.59	-2.57	0.53	0.998644
8127	dm3.chr3L	20,447,605 – 20,447,696	FBnoncoding="snoRNA;ID=FBtr0113615;Name=snoRNA:Me18S-U1356c-RA;Parent=FBgn0082947;Dbxref=FlyBase_Annotation_IDs:CR34646-RA,REFSEQ:NR_003876;score_text=Weakly" - - - "Rfam_10.0=RF00532;snoMe18S-Um1356;AY805218.1/1201-1287\|2.6e-35" - - -	11181	20,447,605 – 20,447,696	+	12	116	69.19	-0.80	0.59	0.873610
8128	dm3.chr3L	20,471,187 – 20,471,258	- - - - - - - -	11182	20,471,187 – 20,471,258	+	4	87	50.59	-1.73	0.22	0.500000
8128	dm3.chr3L	20,471,187 – 20,471,258	- - - - - - - -	11183	20,471,187 – 20,471,258	-	4	87	50.59	-1.23	0.40	0.924008
8129	dm3.chr3L	20,484,761 – 20,484,818	- - - intron="intron;ID=intron_CG5130:5_CG5130:2;Name=CG5130-in;Parent=FBtr0078221;parent_type=mRNA" - - - -	11184	20,484,761 – 20,484,818	+	6	60	70.27	-1.40	0.49	0.873591
8129	dm3.chr3L	20,484,761 – 20,484,818		11185	20,484,761 – 20,484,818	-	6	60	70.27	-1.80	0.43	0.912846
8130	dm3.chr3L	20,489,699 – 20,489,819	- - CDS="CDS;ID=CDS_CG6020:5_320;Name=CG6020-cds;Parent=FBtr0078201;parent_type=mRNA" - - - - -	11186	20,489,699 – 20,489,819	+	14	120	80.90	-1.53	0.52	0.514468
8131	dm3.chr3L	20,491,719 – 20,491,809	- - - intron="intron;ID=intron_FBgn0052425:3_FBgn0052425:7;Name=CG32425-in;Parent=FBtr0113436;parent_type=mRNA" - - - -	11187	20,491,719 – 20,491,809	-	4	92	69.66	-2.20	0.40	0.786089
8132	dm3.chr3L	20,492,393 – 20,492,488	- - - intron="intron;ID=intron_FBgn0052425:3_FBgn0052425:7;Name=CG32425-in;Parent=FBtr0113436;parent_type=mRNA" - - - -	11188	20,492,393 – 20,492,488	-	3	95	67.03	-1.60	0.69	0.931086
8133	dm3.chr3L	20,493,176 – 20,493,296	- - CDS="CDS;ID=CDS_CG18281:1_294;Name=CG18281-cds;Parent=FBtr0078206;parent_type=mRNA" intron="intron;ID=intron_FBgn0052425:3_FBgn0052425:7;Name=CG32425-in;Parent=FBtr0113436;parent_type=mRNA" - - - -	11189	20,493,176 – 20,493,296	-	13	120	67.17	-0.81	0.42	0.573293
8134	dm3.chr3L	20,497,490 – 20,497,610	- - CDS="CDS;ID=CDS_CG17637:1_304;Name=CG17637-cds;Parent=FBtr0078207;parent_type=mRNA" intron="intron;ID=intron_FBgn0052425:3_FBgn0052425:7;Name=CG32425-in;Parent=FBtr0113436;parent_type=mRNA" - - - -	11190	20,497,490 – 20,497,610	-	13	120	67.20	-0.87	0.42	0.628292
8135	dm3.chr3L	20,503,882 – 20,503,980	- - - intron="intron;ID=intron_FBgn0052425:6_FBgn0052425:9;Name=CG32425-in;Parent=FBtr0078203,FBtr0078205;parent_type=mRNA" - - - -	11191	20,503,882 – 20,503,980	+	6	102	93.62	-3.16	0.85	0.991532
8135	dm3.chr3L	20,503,882 – 20,503,980		11192	20,503,882 – 20,503,980	-	6	102	93.62	-3.29	0.90	0.996034
8136	dm3.chr3L	20,511,219 – 20,511,330	- - - - - - - -	11193	20,511,219 – 20,511,330	+	5	120	83.33	-1.41	0.75	0.600729
8137	dm3.chr3L	20,522,956 – 20,523,037	- - - intron="intron;ID=intron_CG4786:2_CG4786:3;Name=Rcd2-in;Parent=FBtr0078213;parent_type=mRNA" - - - -	11194	20,522,956 – 20,523,037	-	8	85	79.97	-1.70	0.56	0.578924
8138	dm3.chr3L	20,529,964 – 20,530,077	- - - - - - - -	11195	20,529,964 – 20,530,077	-	5	120	75.55	-1.73	0.60	0.837131
8139	dm3.chr3L	20,538,178 – 20,538,272	- - - - - - - -	11196	20,538,178 – 20,538,270	+	11	102	66.65	-1.14	0.45	0.751804
				11197	20,538,178 – 20,538,270	-	11	102	66.65	-1.57	0.34	0.595401
				11198	20,538,178 – 20,538,272	-	9	104	68.86	-1.50	0.36	0.520473
8140	dm3.chr3L	20,543,509 – 20,543,624	- - - - - - - -	11199	20,543,509 – 20,543,624	+	11	117	84.03	-2.22	0.67	0.948655
8140	dm3.chr3L	20,543,509 – 20,543,624	- - - - - - - -	11200	20,543,509 – 20,543,624	-	11	117	84.03	-2.27	0.68	0.960776
8141	dm3.chr3L	20,545,513 – 20,545,613	- - - - - - - -	11201	20,545,513 – 20,545,613	+	7	113	63.72	-1.23	0.42	0.823030
8142	dm3.chr3L	20,551,252 – 20,551,363	- - - - - - - -	11202	20,551,252 – 20,551,363	-	10	113	83.85	-1.50	0.69	0.602221
8143	dm3.chr3L	20,555,487 – 20,555,579	- - - - - - - -	11203	20,555,487 – 20,555,579	+	5	92	91.41	-2.62	0.86	0.978010
8144	dm3.chr3L	20,566,512 – 20,566,584	- - - - - - - -	11204	20,566,512 – 20,566,584	-	7	88	84.54	-1.90	0.93	0.977030
8145	dm3.chr3L	20,567,512 – 20,567,611	- - - - - - - -	11205	20,567,512 – 20,567,611	+	6	106	72.40	-2.51	0.35	0.892634
8145	dm3.chr3L	20,567,512 – 20,567,611	- - - - - - - -	11206	20,567,512 – 20,567,611	-	6	106	72.40	-3.16	0.48	0.998394
8146	dm3.chr3L	20,578,419 – 20,578,539	- - - - - - - -	11207	20,578,419 – 20,578,517	-	6	108	67.41	-1.06	0.52	0.759579
8146	dm3.chr3L	20,578,419 – 20,578,539	- - - - - - - -	11208	20,578,441 – 20,578,539	-	5	98	76.13	-1.10	0.74	0.629516
8147	dm3.chr3L	20,583,461 – 20,583,561	- - - - - - - -	11209	20,583,461 – 20,583,556	+	9	112	51.98	-1.42	0.31	0.933384
8147	dm3.chr3L	20,583,461 – 20,583,561	- - - - - - - -	11210	20,583,461 – 20,583,561	+	9	104	51.74	-1.31	0.31	0.932027
8148	dm3.chr3L	20,590,053 – 20,590,158	- - - - - - - -	11211	20,590,053 – 20,590,158	-	6	109	89.74	-1.52	0.84	0.648203
8149	dm3.chr3L	20,592,814 – 20,592,920	- - CDS="CDS;ID=CDS_CG4761:4_303;Name=knrl-cds;Parent=FBtr0078212;parent_type=mRNA" - - - - -	11212	20,592,814 – 20,592,920	+	10	109	87.39	-2.42	0.74	0.965614
8149	dm3.chr3L	20,592,814 – 20,592,920		11213	20,592,814 – 20,592,920	-	10	109	87.39	-1.66	0.69	0.514221
8150	dm3.chr3L	20,609,620 – 20,609,695	- - - intron="intron;ID=intron_CG4761:2_CG4761:3;Name=knrl-in;Parent=FBtr0078212;parent_type=mRNA" - - - -	11214	20,609,620 – 20,609,695	-	5	75	83.56	-1.71	0.83	0.897505
8151	dm3.chr3L	20,627,341 – 20,627,439	- - - - - - - -	11215	20,627,341 – 20,627,439	+	7	100	67.85	-2.35	0.26	0.776885
8152	dm3.chr3L	20,627,566 – 20,627,632	- - - - - - - -	11216	20,627,566 – 20,627,632	+	11	69	84.80	-1.60	0.82	0.888036
8153	dm3.chr3L	20,628,048 – 20,628,138	- - - - - - - -	11217	20,628,048 – 20,628,138	+	10	97	82.30	-2.29	0.52	0.824274
8154	dm3.chr3L	20,637,021 – 20,637,119	- - - - - - - -	11218	20,637,021 – 20,637,119	-	12	113	69.71	-1.65	0.43	0.905341
8155	dm3.chr3L	20,642,711 – 20,642,781	- - - - - - - -	11219	20,642,711 – 20,642,781	+	6	77	85.07	-1.83	0.70	0.701928
8155	dm3.chr3L	20,642,711 – 20,642,781	- - - - - - - -	11220	20,642,711 – 20,642,781	-	6	77	85.07	-1.69	0.71	0.615189
8156	dm3.chr3L	20,646,170 – 20,646,268	- - - - - - - -	11221	20,646,170 – 20,646,268	+	6	102	88.66	-1.41	0.81	0.515842
8157	dm3.chr3L	20,667,050 – 20,667,142	- - - - - - - -	11222	20,667,050 – 20,667,142	+	6	101	70.79	-2.26	0.39	0.902363
8158	dm3.chr3L	20,669,047 – 20,669,148	- - - - - - - -	11223	20,669,047 – 20,669,148	+	5	112	61.30	-2.03	0.28	0.742965
8159	dm3.chr3L	20,679,570 – 20,679,664	- - - - - - - -	11224	20,679,570 – 20,679,664	+	12	102	79.25	-1.01	0.64	0.515625
8160	dm3.chr3L	20,681,647 – 20,681,745	- - - - - - - -	11225	20,681,647 – 20,681,745	-	6	112	85.59	-2.60	0.74	0.974555
8161	dm3.chr3L	20,687,202 – 20,687,317	- - - intron="intron;ID=intron_CG4717:2_CG4717:3;Name=kni-in;Parent=FBtr0078283;parent_type=mRNA" - - - -	11226	20,687,202 – 20,687,317	-	5	142	59.27	-2.02	0.44	0.994139
8162	dm3.chr3L	20,689,633 – 20,689,727	- - - - - - - -	11227	20,689,633 – 20,689,727	-	8	98	77.36	-1.59	0.53	0.577108
8163	dm3.chr3L	20,700,173 – 20,700,269	- - - - - - - -	11228	20,700,173 – 20,700,269	-	5	96	70.41	-2.05	0.44	0.894315
8164	dm3.chr3L	20,700,353 – 20,700,431	- - - - - - - -	11229	20,700,353 – 20,700,431	-	12	92	79.04	-1.16	0.66	0.551457
8165	dm3.chr3L	20,706,635 – 20,706,696	- - CDS="CDS;ID=CDS_FBgn0037015:2_478;Name=CG13253-cds;Parent=FBtr0305579;parent_type=mRNA" - - - - -	11230	20,706,635 – 20,706,696	+	12	61	88.25	-1.78	0.82	0.892383
8166	dm3.chr3L	20,707,835 – 20,707,943	- - - intron="intron;ID=intron_FBgn0085289:3_FBgn0085289:4;Name=CG34260-in;Parent=FBtr0305578;parent_type=mRNA" - - - -	11231	20,707,835 – 20,707,943	+	8	121	71.24	-1.86	0.41	0.829521
8166	dm3.chr3L	20,707,835 – 20,707,943		11232	20,707,835 – 20,707,943	-	8	121	71.24	-1.81	0.35	0.522409
8167	dm3.chr3L	20,708,714 – 20,708,830	- - - - - - - -	11233	20,708,714 – 20,708,809	-	13	117	72.86	-0.42	0.69	0.596887
8167	dm3.chr3L	20,708,714 – 20,708,830	- - - - - - - -	11234	20,708,735 – 20,708,830	-	12	115	64.27	-0.51	0.71	0.974732
8168	dm3.chr3L	20,708,860 – 20,708,980	- - - intron="intron;ID=intron_FBgn0037015:6_FBgn0037015:4;Name=CG13253-in;Parent=FBtr0113183,FBtr0305579;parent_type=mRNA" - - - -	11235	20,708,860 – 20,708,980	-	8	133	76.40	-1.91	0.49	0.786474
8169	dm3.chr3L	20,723,584 – 20,723,649	- - - - - - - -	11236	20,723,584 – 20,723,649	+	3	65	94.87	-2.93	0.88	0.984297
8170	dm3.chr3L	20,728,545 – 20,728,642	- - - intron="intron;ID=intron_CG13252:1_CG13252:2;Name=CG13252-in;Parent=FBtr0078245;parent_type=mRNA" - - - -	11237	20,728,545 – 20,728,642	+	8	116	68.00	-1.99	0.35	0.866942
8171	dm3.chr3L	20,738,474 – 20,738,570	- - - - - - - -	11238	20,738,474 – 20,738,570	-	8	97	77.11	-1.20	0.75	0.902565
8172	dm3.chr3L	20,740,987 – 20,741,078	- - - - - - - -	11239	20,740,987 – 20,741,078	+	8	110	71.80	-1.68	0.40	0.622468
8172	dm3.chr3L	20,740,987 – 20,741,078	- - - - - - - -	11240	20,740,987 – 20,741,078	-	8	110	71.80	-1.50	0.48	0.795519
8173	dm3.chr3L	20,743,577 – 20,743,671	- - - - - - - -	11241	20,743,577 – 20,743,671	+	7	127	62.97	-2.37	0.40	0.989767
8173	dm3.chr3L	20,743,577 – 20,743,671	- - - - - - - -	11242	20,743,577 – 20,743,671	-	7	127	62.97	-2.59	0.33	0.979694
8174	dm3.chr3L	20,750,426 – 20,750,525	- - - - - - - -	11243	20,750,426 – 20,750,525	-	5	99	91.56	-1.61	0.91	0.851003
8175	dm3.chr3L	20,752,504 – 20,752,622	- - - - - - - -	11244	20,752,504 – 20,752,622	+	5	118	72.67	-1.65	0.55	0.898666
8176	dm3.chr3L	20,753,892 – 20,753,944	- - - - - - - -	11245	20,753,892 – 20,753,944	+	7	54	84.15	-2.62	0.66	0.975096
8177	dm3.chr3L	20,754,383 – 20,754,438	- - - - - - - -	11246	20,754,383 – 20,754,438	-	7	55	72.73	-1.19	0.52	0.772931
8178	dm3.chr3L	20,764,553 – 20,764,635	- - - - - - - -	11247	20,764,553 – 20,764,635	+	12	89	62.14	-0.82	0.37	0.585639
8179	dm3.chr3L	20,765,693 – 20,765,784	- - - - - - - -	11248	20,765,693 – 20,765,784	+	3	91	98.53	-1.80	1.00	0.952226
8180	dm3.chr3L	20,772,277 – 20,772,388	- - CDS="CDS;ID=CDS_FBgn0037020:2_469;Name=CG4289-cds;Parent=FBtr0078251;parent_type=mRNA" - - - - -	11249	20,772,277 – 20,772,388	+	14	120	68.37	-0.19	0.61	0.549664
8181	dm3.chr3L	20,782,553 – 20,782,665	- - - intron="intron;ID=intron_CG3871:3_CG3871:4;Name=Six4-in;Parent=FBtr0078274,FBtr0078275;parent_type=mRNA" - - - -	11250	20,782,553 – 20,782,665	-	5	112	76.74	-1.66	0.79	0.940608
8182	dm3.chr3L	20,794,327 – 20,794,417	- - CDS="CDS;ID=CDS_CG11451:2_306;Name=Spc105R-cds;Parent=FBtr0078255;parent_type=mRNA" - - - - -	11251	20,794,327 – 20,794,417	+	5	120	64.17	-0.99	0.56	0.738434
8183	dm3.chr3L	20,817,905 – 20,818,020	- - - intron="intron;ID=intron_FBgn0259243:7_FBgn0259243:12;Name=Pka-R1-in;Parent=FBtr0302640,FBtr0300532;parent_type=mRNA" - - - -	11252	20,817,905 – 20,818,020	+	6	116	66.30	-1.05	0.58	0.948303
8184	dm3.chr3L	20,818,402 – 20,818,539	- - - intron="intron;ID=intron_FBgn0259243:7_FBgn0259243:12;Name=Pka-R1-in;Parent=FBtr0302640,FBtr0300532;parent_type=mRNA" - - - -	11253	20,818,402 – 20,818,539	+	8	159	65.05	-1.89	0.33	0.859683
8185	dm3.chr3L	20,833,804 – 20,833,902	- - CDS="CDS;ID=CDS_CG18332:3_304;Name=CSN3-cds;Parent=FBtr0078269;parent_type=mRNA" - - - - -	11254	20,833,804 – 20,833,902	+	11	103	72.25	-1.22	0.50	0.853965
8186	dm3.chr3L	20,847,151 – 20,847,321	- - CDS="CDS;ID=CDS_CG32432:8_320;Name=CG32432-cds;Parent=FBtr0078268;parent_type=mRNA" - - - - -	11255	20,847,151 – 20,847,321	+	15	174	71.90	-1.78	0.36	0.864380
8187	dm3.chr3L	20,849,951 – 20,850,068	- - - intron="intron;ID=intron_CG32432:3_CG32432:4;Name=CG32432-in;Parent=FBtr0078268;parent_type=mRNA" - - - -	11256	20,849,951 – 20,850,068	+	6	117	81.31	-2.83	0.54	0.976856
8188	dm3.chr3L	20,851,832 – 20,851,923	- - - intron="intron;ID=intron_CG32432:3_CG32432:4;Name=CG32432-in;Parent=FBtr0078268;parent_type=mRNA" - - - -	11257	20,851,832 – 20,851,923	-	9	109	66.50	-2.10	0.51	0.997094
8189	dm3.chr3L	20,852,916 – 20,853,020	- - CDS="CDS;ID=CDS_CG32432:3_320;Name=CG32432-cds;Parent=FBtr0078268;parent_type=mRNA" - - - - -	11258	20,852,916 – 20,853,020	-	6	105	63.79	-1.01	0.41	0.580456
8190	dm3.chr3L	20,855,220 – 20,855,270	- - - intron="intron;ID=intron_CG32432:2_CG32432:3;Name=CG32432-in;Parent=FBtr0078268;parent_type=mRNA" - - - -	11259	20,855,220 – 20,855,270	+	5	52	95.67	-2.69	0.98	0.993733
8191	dm3.chr3L	20,877,759 – 20,877,858	- - - intron="intron;ID=intron_CG32432:1_CG32432:2;Name=CG32432-in;Parent=FBtr0078268;parent_type=mRNA" - - - -	11260	20,877,759 – 20,877,858	+	4	99	74.39	-1.88	0.53	0.720604
8192	dm3.chr3L	20,895,071 – 20,895,175	- - - - - - - -	11261	20,895,071 – 20,895,175	-	4	104	87.09	-2.65	0.82	0.979977
8193	dm3.chr3L	20,896,058 – 20,896,151	- - - - - - - -	11262	20,896,058 – 20,896,151	-	6	114	73.99	-0.97	0.58	0.525377
8194	dm3.chr3L	20,901,244 – 20,901,346	- - - - - - - -	11263	20,901,244 – 20,901,346	+	8	110	75.85	-1.74	0.67	0.957234
8195	dm3.chr3L	20,903,914 – 20,904,005	- - - - - - - -	11264	20,903,914 – 20,904,005	-	10	114	79.65	-1.70	0.57	0.544007
8196	dm3.chr3L	20,909,782 – 20,909,873	- - - - - - - -	11265	20,909,782 – 20,909,873	-	6	99	82.67	-1.64	0.73	0.773443
8197	dm3.chr3L	20,923,936 – 20,924,052	- - - intron="intron;ID=intron_CG10580:4_CG10580:5;Name=fng-in;Parent=FBtr0078267;parent_type=mRNA" - - - -	11266	20,923,936 – 20,924,052	-	5	119	85.87	-1.67	0.72	0.500000
8198	dm3.chr3L	20,933,554 – 20,933,643	- - - intron="intron;ID=intron_CG10580:2_CG10580:3;Name=fng-in;Parent=FBtr0078267;parent_type=mRNA" - - - -	11267	20,933,554 – 20,933,643	-	6	90	63.26	-1.91	0.34	0.950132
8199	dm3.chr3L	20,970,747 – 20,970,874	- - - - - - - -	11268	20,970,747 – 20,970,840	+	6	95	75.45	-2.11	0.56	0.968257
				11269	20,970,747 – 20,970,840	-	6	95	75.45	-2.31	0.60	0.989671
				11270	20,970,762 – 20,970,874	-	5	112	96.30	-1.48	0.90	0.567260
8200	dm3.chr3L	20,973,483 – 20,973,585	- - - - - - - -	11271	20,973,483 – 20,973,585	+	5	108	77.15	-2.35	0.46	0.842342
8201	dm3.chr3L	20,977,418 – 20,977,514	- - - - - - - -	11272	20,977,418 – 20,977,514	+	8	99	72.59	-1.00	0.56	0.724130
8202	dm3.chr3L	20,978,498 – 20,978,559	- - - - - - - -	11273	20,978,498 – 20,978,559	-	6	61	67.46	-1.17	0.52	0.800901
8203	dm3.chr3L	20,998,443 – 20,998,536	- - CDS="CDS;ID=CDS_FBgn0003415:8_368;Name=skd-cds;Parent=FBtr0112830;parent_type=mRNA" - - - - -	11274	20,998,443 – 20,998,536	-	5	93	92.15	-1.51	0.86	0.587634
8204	dm3.chr3L	21,001,393 – 21,001,491	- - - intron="intron;ID=intron_FBgn0003415:12_FBgn0003415:11;Name=skd-in;Parent=FBtr0078329,FBtr0078328,FBtr0112830;parent_type=mRNA" - - - -	11275	21,001,393 – 21,001,491	+	3	99	90.78	-1.75	0.84	0.656028
8205	dm3.chr3L	21,004,118 – 21,004,227	- - - intron="intron;ID=intron_FBgn0003415:12_FBgn0003415:11;Name=skd-in;Parent=FBtr0078329,FBtr0078328,FBtr0112830;parent_type=mRNA" - - - -	11276	21,004,118 – 21,004,227	-	8	109	68.03	-1.93	0.31	0.735450
8206	dm3.chr3L	21,022,571 – 21,022,691	- - CDS="CDS;ID=CDS_FBgn0037044:3_290;Name=CG10585-cds;Parent=FBtr0078287;parent_type=mRNA" - - - - -	11277	21,022,571 – 21,022,691	+	15	120	77.11	-1.56	0.43	0.614025
8207	dm3.chr3L	21,028,424 – 21,028,539	- - - intron="intron;ID=intron_FBgn0026179:1_FBgn0026179:6;Name=siz-in;Parent=FBtr0078289;parent_type=mRNA" - - - -	11278	21,028,424 – 21,028,539	+	5	131	61.59	-1.46	0.33	0.597075
8207	dm3.chr3L	21,028,424 – 21,028,539		11279	21,028,424 – 21,028,539	-	5	131	61.59	-1.56	0.33	0.689786
8208	dm3.chr3L	21,033,604 – 21,033,700	- - - intron="intron;ID=intron_FBgn0026179:1_FBgn0026179:6;Name=siz-in;Parent=FBtr0078289;parent_type=mRNA" - - - -	11280	21,033,604 – 21,033,700	-	8	107	61.39	-1.61	0.27	0.661380
8209	dm3.chr3L	21,036,067 – 21,036,182	- - - intron="intron;ID=intron_FBgn0026179:1_FBgn0026179:6;Name=siz-in;Parent=FBtr0078289;parent_type=mRNA" - - - -	11281	21,036,067 – 21,036,169	-	5	102	94.31	-1.97	0.84	0.743115
				11282	21,036,090 – 21,036,182	+	5	92	92.16	-1.09	0.94	0.603563
				11283	21,036,090 – 21,036,182	-	5	92	92.16	-1.47	0.93	0.812430
8210	dm3.chr3L	21,041,708 – 21,041,904	- - CDS="CDS;ID=CDS_FBgn0026179:2_274;Name=siz-cds;Parent=FBtr0301602;parent_type=mRNA" intron="intron;ID=intron_FBgn0026179:1_FBgn0026179:6;Name=siz-in;Parent=FBtr0078289;parent_type=mRNA" - - - -	11284	21,041,708 – 21,041,799	+	6	105	73.59	-1.74	0.44	0.500000
8210	dm3.chr3L	21,041,708 – 21,041,904		11285	21,041,799 – 21,041,904	-	10	109	82.10	-1.40	0.77	0.864171
8211	dm3.chr3L	21,050,214 – 21,050,271	- - - intron="intron;ID=intron_FBgn0026179:2_FBgn0026179:6;Name=siz-in;Parent=FBtr0301602;parent_type=mRNA" - - - -	11286	21,050,214 – 21,050,271	+	4	62	59.60	-2.32	0.39	0.986324
8211	dm3.chr3L	21,050,214 – 21,050,271		11287	21,050,214 – 21,050,271	-	4	62	59.60	-1.71	0.44	0.954085
8212	dm3.chr3L	21,050,411 – 21,050,507	- - - intron="intron;ID=intron_FBgn0026179:2_FBgn0026179:6;Name=siz-in;Parent=FBtr0301602;parent_type=mRNA" - - - -	11288	21,050,411 – 21,050,507	+	3	96	84.72	-1.54	0.79	0.527662
8213	dm3.chr3L	21,052,788 – 21,052,928	- - - intron="intron;ID=intron_FBgn0026179:3_FBgn0026179:4;Name=siz-in;Parent=FBtr0078290;parent_type=mRNA" - - - -	11289	21,052,788 – 21,052,899	-	6	111	73.48	-2.59	0.58	0.997785
8213	dm3.chr3L	21,052,788 – 21,052,928		11290	21,052,826 – 21,052,928	-	6	105	72.56	-1.82	0.55	0.955257
8214	dm3.chr3L	21,054,230 – 21,054,368	- - - intron="intron;ID=intron_FBgn0026179:3_FBgn0026179:4;Name=siz-in;Parent=FBtr0078290;parent_type=mRNA" - - - -	11291	21,054,230 – 21,054,368	+	3	160	53.12	-1.06	0.41	0.513202
8214	dm3.chr3L	21,054,230 – 21,054,368		11292	21,054,230 – 21,054,368	-	3	160	53.12	-1.26	0.39	0.601665
8215	dm3.chr3L	21,056,489 – 21,056,641	- - - intron="intron;ID=intron_FBgn0026179:3_FBgn0026179:4;Name=siz-in;Parent=FBtr0078290;parent_type=mRNA" - - - -	11293	21,056,489 – 21,056,601	+	5	120	91.67	-2.71	0.85	0.980108
8215	dm3.chr3L	21,056,489 – 21,056,641		11294	21,056,521 – 21,056,641	+	5	120	94.42	-2.35	0.87	0.938190
8216	dm3.chr3L	21,058,918 – 21,059,029	- - - intron="intron;ID=intron_FBgn0026179:4_FBgn0026179:6;Name=siz-in;Parent=FBtr0078290;parent_type=mRNA" - - - -	11295	21,058,918 – 21,059,029	-	5	112	84.80	-1.75	0.71	0.641934
8217	dm3.chr3L	21,059,178 – 21,059,306	- - CDS="CDS;ID=CDS_FBgn0262482:1_385;Name=CG43072-cds;Parent=FBtr0304821;parent_type=mRNA" intron="intron;ID=intron_FBgn0026179:4_FBgn0026179:6;Name=siz-in;Parent=FBtr0078290;parent_type=mRNA" - - - -	11296	21,059,178 – 21,059,306	-	6	148	77.18	-1.84	0.57	0.788300
8218	dm3.chr3L	21,060,933 – 21,061,027	- - - intron="intron;ID=intron_FBgn0026179:4_FBgn0026179:6;Name=siz-in;Parent=FBtr0078290;parent_type=mRNA" - - - -	11297	21,060,933 – 21,061,027	-	11	100	63.65	-1.14	0.39	0.855738
8219	dm3.chr3L	21,065,283 – 21,065,391	- - CDS="CDS;ID=CDS_FBgn0026179:8_322;Name=siz-cds;Parent=FBtr0111038;parent_type=mRNA" - - - - -	11298	21,065,283 – 21,065,391	-	7	114	60.31	-1.01	0.45	0.923875
8220	dm3.chr3L	21,071,656 – 21,071,757	- - CDS="CDS;ID=CDS_CG10573:6_313;Name=ko-cds;Parent=FBtr0078324;parent_type=mRNA" - - - - -	11299	21,071,656 – 21,071,757	+	13	101	78.09	-1.23	0.56	0.537939
8221	dm3.chr3L	21,079,445 – 21,079,545	- - - intron="intron;ID=intron_CG10573:3_CG10573:4;Name=ko-in;Parent=FBtr0078324;parent_type=mRNA" - - - -	11300	21,079,445 – 21,079,545	+	6	110	77.30	-2.21	0.44	0.710469
8221	dm3.chr3L	21,079,445 – 21,079,545		11301	21,079,445 – 21,079,545	-	6	110	77.30	-1.56	0.57	0.619918
8222	dm3.chr3L	21,090,131 – 21,090,240	- - - intron="intron;ID=intron_CG10573:2_CG10573:3;Name=ko-in;Parent=FBtr0078324;parent_type=mRNA" - - - -	11302	21,090,131 – 21,090,240	-	3	111	81.87	-1.75	0.71	0.570282
8223	dm3.chr3L	21,101,252 – 21,101,348	- - - intron="intron;ID=intron_CG10573:1_CG10573:2;Name=ko-in;Parent=FBtr0078324;parent_type=mRNA" - - - -	11303	21,101,252 – 21,101,348	-	6	96	85.53	-1.39	0.80	0.652071
8224	dm3.chr3L	21,116,269 – 21,116,364	- - - intron="intron;ID=intron_CG10573:1_CG10573:2;Name=ko-in;Parent=FBtr0078324;parent_type=mRNA" - - - -	11304	21,116,269 – 21,116,364	-	7	106	70.91	-1.65	0.41	0.745547
8225	dm3.chr3L	21,118,965 – 21,119,089	- - - intron="intron;ID=intron_CG10573:1_CG10573:2;Name=ko-in;Parent=FBtr0078324;parent_type=mRNA" - - - -	11305	21,118,965 – 21,119,089	-	5	124	93.47	-1.86	0.86	0.780990
8226	dm3.chr3L	21,119,944 – 21,120,057	- - - intron="intron;ID=intron_CG10573:1_CG10573:2;Name=ko-in;Parent=FBtr0078324;parent_type=mRNA" - - - -	11306	21,119,944 – 21,120,057	+	6	114	85.81	-1.71	0.74	0.718583
8227	dm3.chr3L	21,124,292 – 21,124,376	- - - - - - - -	11307	21,124,292 – 21,124,376	+	7	85	68.70	-1.53	0.39	0.811650
8228	dm3.chr3L	21,169,448 – 21,169,538	- - - intron="intron;ID=intron_CG32435:1_CG32435:2;Name=chb-in;Parent=FBtr0089460;parent_type=mRNA" - - - -	11308	21,169,448 – 21,169,538	+	8	93	69.69	-1.29	0.41	0.696636
8229	dm3.chr3L	21,175,875 – 21,175,976	- - - - - - - -	11309	21,175,875 – 21,175,976	+	6	102	76.63	-1.22	0.67	0.724891
8230	dm3.chr3L	21,180,192 – 21,180,329	- - - intron="intron;ID=intron_FBgn0259239:5_FBgn0259239:4;Name=CG42337-in;Parent=FBtr0299857,FBtr0305981;parent_type=mRNA" - - - -	11310	21,180,192 – 21,180,329	-	7	150	65.54	-1.52	0.32	0.582548
8231	dm3.chr3L	21,180,903 – 21,180,954	- - - intron="intron;ID=intron_FBgn0259239:5_FBgn0259239:4;Name=CG42337-in;Parent=FBtr0299857,FBtr0305981;parent_type=mRNA" - - - -	11311	21,180,903 – 21,180,954	+	6	57	77.36	-2.47	0.72	0.993875
8231	dm3.chr3L	21,180,903 – 21,180,954		11312	21,180,903 – 21,180,954	-	6	57	77.36	-3.66	0.54	0.998875
8232	dm3.chr3L	21,193,811 – 21,193,924	- - - - - - - -	11313	21,193,811 – 21,193,924	+	5	115	88.20	-1.59	0.78	0.500000
8232	dm3.chr3L	21,193,811 – 21,193,924	- - - - - - - -	11314	21,193,811 – 21,193,924	-	5	115	88.20	-1.43	0.91	0.833325
8233	dm3.chr3L	21,197,751 – 21,197,823	- - - intron="intron;ID=intron_CG10512:1_CG10512:2;Name=CG10512-in;Parent=FBtr0078297;parent_type=mRNA" - - - -	11315	21,197,751 – 21,197,823	+	3	74	78.73	-2.59	0.50	0.761201
8233	dm3.chr3L	21,197,751 – 21,197,823		11316	21,197,751 – 21,197,823	-	3	74	78.73	-2.46	0.59	0.879192
8234	dm3.chr3L	21,209,359 – 21,209,510	- - - - - - - -	11317	21,209,359 – 21,209,510	+	6	157	63.85	-1.99	0.49	0.993459
8235	dm3.chr3L	21,213,799 – 21,213,933	- - CDS="CDS;ID=CDS_FBgn0262855:1_472;Name=CG43219-cds;Parent=FBtr0306161;parent_type=mRNA" - - - - -	11318	21,213,799 – 21,213,911	-	11	119	83.44	-2.02	0.66	0.876776
8235	dm3.chr3L	21,213,799 – 21,213,933		11319	21,213,839 – 21,213,933	-	8	119	75.46	-2.18	0.71	0.990625
8236	dm3.chr3L	21,220,816 – 21,220,913	- - CDS="CDS;ID=CDS_FBgn0004865:4_489;Name=Eip78C-cds;Parent=FBtr0306158;parent_type=mRNA" - - - - -	11320	21,220,816 – 21,220,913	+	13	117	77.84	-2.41	0.55	0.976556
8237	dm3.chr3L	21,226,231 – 21,226,322	- - - intron="intron;ID=intron_FBgn0004865:6_FBgn0004865:8;Name=Eip78C-in;Parent=FBtr0078306,FBtr0306157,FBtr0306158;parent_type=mRNA" - - - -	11321	21,226,231 – 21,226,322	+	5	91	94.91	-2.35	0.79	0.774398
8238	dm3.chr3L	21,227,827 – 21,227,926	- - - intron="intron;ID=intron_FBgn0004865:6_FBgn0004865:8;Name=Eip78C-in;Parent=FBtr0078306,FBtr0306157,FBtr0306158;parent_type=mRNA" - - - -	11322	21,227,827 – 21,227,926	+	5	104	72.15	-2.23	0.47	0.952615
8239	dm3.chr3L	21,231,394 – 21,231,493	- - - intron="intron;ID=intron_FBgn0004865:6_FBgn0004865:8;Name=Eip78C-in;Parent=FBtr0078306,FBtr0306157,FBtr0306158;parent_type=mRNA" - - - -	11323	21,231,394 – 21,231,493	-	9	107	74.54	-2.42	0.29	0.646225
8240	dm3.chr3L	21,235,524 – 21,235,621	- - - intron="intron;ID=intron_FBgn0004865:7_FBgn0004865:8;Name=Eip78C-in;Parent=FBtr0078307,FBtr0078308;parent_type=mRNA" - - - -	11324	21,235,524 – 21,235,621	-	9	110	77.53	-2.43	0.41	0.845623
8241	dm3.chr3L	21,244,736 – 21,244,827	- - - intron="intron;ID=intron_FBgn0004865:7_FBgn0004865:8;Name=Eip78C-in;Parent=FBtr0078307,FBtr0078308;parent_type=mRNA" - - - -	11325	21,244,736 – 21,244,827	+	7	99	82.73	-2.38	0.59	0.922411
8242	dm3.chr3L	21,254,321 – 21,254,413	- - - - - - - -	11326	21,254,321 – 21,254,413	-	4	100	74.09	-1.26	0.63	0.554745
8243	dm3.chr3L	21,254,857 – 21,254,952	- - - - - - - -	11327	21,254,857 – 21,254,952	-	6	96	77.14	-1.25	0.68	0.589510
8244	dm3.chr3L	21,272,688 – 21,272,808	- - CDS="CDS;ID=CDS_FBgn0012034:7_478;Name=AcCoAS-cds;Parent=FBtr0078413;parent_type=mRNA" - - - - -	11328	21,272,688 – 21,272,808	-	14	120	78.93	-1.75	0.46	0.714458
8245	dm3.chr3L	21,308,605 – 21,308,731	- - - - - - - -	11329	21,308,605 – 21,308,731	-	9	141	71.27	-2.25	0.48	0.991487
8246	dm3.chr3L	21,313,356 – 21,313,461	- - CDS="CDS;ID=CDS_FBgn0086913:1_401;Name=Rab26-cds;Parent=FBtr0112677;parent_type=mRNA" - - - - -	11330	21,313,356 – 21,313,461	+	7	117	73.13	-1.69	0.43	0.584226
8247	dm3.chr3L	21,332,785 – 21,332,893	- - CDS="CDS;ID=CDS_CG7324:7_312;Name=CG7324-cds;Parent=FBtr0078404;parent_type=mRNA" - - - - -	11331	21,332,785 – 21,332,893	+	13	113	73.50	-0.69	0.57	0.651761
8248	dm3.chr3L	21,350,196 – 21,350,297	- - - - - - - -	11332	21,350,196 – 21,350,297	-	7	106	63.62	-2.07	0.30	0.939410
8249	dm3.chr3L	21,384,038 – 21,384,136	- - - intron="intron;ID=intron_CG6014:1_CG6014:2;Name=rgn-in;Parent=FBtr0078346;parent_type=mRNA" - - - -	11333	21,384,038 – 21,384,136	+	5	106	57.32	-2.19	0.34	0.986278
8249	dm3.chr3L	21,384,038 – 21,384,136		11334	21,384,038 – 21,384,136	-	5	106	57.32	-1.86	0.26	0.744206
8250	dm3.chr3L	21,384,400 – 21,384,508	- - - intron="intron;ID=intron_CG6014:1_CG6014:2;Name=rgn-in;Parent=FBtr0078346;parent_type=mRNA" - - - -	11335	21,384,400 – 21,384,508	-	7	111	58.78	-1.51	0.30	0.813363
8251	dm3.chr3L	21,386,423 – 21,386,530	- - - intron="intron;ID=intron_CG6014:1_CG6014:2;Name=rgn-in;Parent=FBtr0078346;parent_type=mRNA" - - - -	11336	21,386,423 – 21,386,530	+	5	120	79.74	-2.38	0.49	0.737618
8252	dm3.chr3L	21,393,877 – 21,393,981	- - - intron="intron;ID=intron_CG6014:1_CG6014:2;Name=rgn-in;Parent=FBtr0078346;parent_type=mRNA" - - - -	11337	21,393,877 – 21,393,981	+	5	105	60.91	-1.00	0.49	0.913858
8253	dm3.chr3L	21,398,644 – 21,398,750	- - CDS="CDS;ID=CDS_FBgn0002842:1_448;Name=sa-cds;Parent=FBtr0078401;parent_type=mRNA" intron="intron;ID=intron_CG6014:1_CG6014:2;Name=rgn-in;Parent=FBtr0078346;parent_type=mRNA" - - - -	11338	21,398,644 – 21,398,750	+	6	120	72.02	-1.11	0.58	0.724590
8254	dm3.chr3L	21,404,258 – 21,404,365	- - - - - - - -	11339	21,404,258 – 21,404,365	-	5	109	79.76	-1.84	0.64	0.779868
8255	dm3.chr3L	21,406,597 – 21,406,663	- - - intron="intron;ID=intron_CG6014:2_CG6014:3;Name=rgn-in;Parent=FBtr0078346;parent_type=mRNA" - - - -	11340	21,406,597 – 21,406,663	+	4	66	93.94	-2.06	0.86	0.848232
8256	dm3.chr3L	21,429,684 – 21,429,789	- - - - - - - -	11341	21,429,684 – 21,429,789	+	13	116	65.54	-1.96	0.21	0.573183
8257	dm3.chr3L	21,441,721 – 21,441,813	- - - - - - - -	11342	21,441,721 – 21,441,813	+	11	103	85.99	-2.44	0.58	0.825304
8258	dm3.chr3L	21,446,631 – 21,446,732	- - - - - - - -	11343	21,446,631 – 21,446,732	+	6	114	80.06	-2.27	0.70	0.974440
8259	dm3.chr3L	21,449,730 – 21,449,826	- - - - - - - -	11344	21,449,730 – 21,449,826	-	8	108	80.79	-1.60	0.73	0.876810
8260	dm3.chr3L	21,457,517 – 21,457,672	- - - - - - - -	11345	21,457,517 – 21,457,636	+	9	119	85.69	-2.02	0.84	0.961955
				11346	21,457,556 – 21,457,672	+	8	120	94.84	-3.69	0.94	0.998162
				11347	21,457,556 – 21,457,672	-	8	120	94.84	-2.20	0.91	0.952513
8261	dm3.chr3L	21,461,778 – 21,461,894	- - - - - - - -	11348	21,461,778 – 21,461,894	-	5	117	74.70	-1.55	0.51	0.500000
8262	dm3.chr3L	21,474,594 – 21,474,684	- - - - - - - -	11349	21,474,594 – 21,474,684	-	6	90	92.74	-1.32	0.89	0.564074
8263	dm3.chr3L	21,474,839 – 21,474,900	- - - - - - - -	11350	21,474,839 – 21,474,900	+	3	61	89.94	-2.12	0.84	0.879183
8264	dm3.chr3L	21,474,995 – 21,475,085	- - - - - - - -	11351	21,474,995 – 21,475,085	+	9	101	78.56	-1.47	0.63	0.769217
8264	dm3.chr3L	21,474,995 – 21,475,085	- - - - - - - -	11352	21,474,995 – 21,475,085	-	9	101	78.56	-1.30	0.78	0.899500
8265	dm3.chr3L	21,502,383 – 21,502,476	- - - intron="intron;ID=intron_FBgn0037092:1_FBgn0037092:3;Name=M6-in;Parent=FBtr0078355;parent_type=mRNA" - - - -	11353	21,502,383 – 21,502,476	+	5	93	94.19	-1.33	0.91	0.577976
8266	dm3.chr3L	21,531,096 – 21,531,187	- - CDS="CDS;ID=CDS_FBgn0015283:3_477;Name=Pros54-cds;Parent=FBtr0078368;parent_type=mRNA" - - - - -	11354	21,531,096 – 21,531,187	+	7	92	65.20	-1.36	0.35	0.700588
8266	dm3.chr3L	21,531,096 – 21,531,187		11355	21,531,096 – 21,531,187	-	7	92	65.20	-1.73	0.29	0.697961
8267	dm3.chr3L	21,547,112 – 21,547,257	- - CDS="CDS;ID=CDS_FBgn0037098:12_470;Name=Wnk-cds;Parent=FBtr0078381;parent_type=mRNA" - - - - -	11356	21,547,112 – 21,547,217	+	12	114	84.58	-1.47	0.74	0.710523
				11357	21,547,112 – 21,547,217	-	12	114	84.58	-1.56	0.76	0.813161
				11358	21,547,137 – 21,547,257	+	12	120	90.16	-2.92	0.80	0.988952
				11359	21,547,137 – 21,547,257	-	12	120	90.16	-2.54	0.82	0.975735
8268	dm3.chr3L	21,547,568 – 21,547,678	- - - - - - - -	11360	21,547,568 – 21,547,678	-	5	110	96.18	-1.10	0.95	0.547581
8269	dm3.chr3L	21,548,020 – 21,548,127	- - - - - - - -	11361	21,548,020 – 21,548,127	+	5	107	97.01	-1.65	0.89	0.614734
8269	dm3.chr3L	21,548,020 – 21,548,127	- - - - - - - -	11362	21,548,020 – 21,548,127	-	5	107	97.01	-2.45	0.97	0.986091
8270	dm3.chr3L	21,551,122 – 21,551,177	- - - - - - - -	11363	21,551,122 – 21,551,177	-	5	55	64.04	-1.47	0.42	0.716275
8271	dm3.chr3L	21,568,657 – 21,568,747	- - - - - - - -	11364	21,568,657 – 21,568,747	+	10	116	68.28	-1.32	0.41	0.564567
8272	dm3.chr3L	21,577,714 – 21,577,855	- - - - - - - -	11365	21,577,714 – 21,577,816	+	3	102	80.85	-0.78	1.01	0.815570
8272	dm3.chr3L	21,577,714 – 21,577,855	- - - - - - - -	11366	21,577,747 – 21,577,855	-	4	109	73.43	-1.56	0.53	0.566410
8273	dm3.chr3L	21,578,277 – 21,578,354	- - - - - - - -	11367	21,578,277 – 21,578,354	-	4	80	78.30	-2.06	0.57	0.746900
8274	dm3.chr3L	21,585,148 – 21,585,373	- - - - - - - -	11368	21,585,148 – 21,585,242	-	8	111	74.57	-1.03	0.71	0.744965
				11369	21,585,177 – 21,585,272	-	8	110	65.18	-0.87	0.63	0.952381
				11370	21,585,272 – 21,585,373	+	6	107	71.39	-1.09	0.50	0.553481
8275	dm3.chr3L	21,593,498 – 21,593,598	- - - intron="intron;ID=intron_CG7807:1_CG7807:2;Name=AP-2-in;Parent=FBtr0078418;parent_type=mRNA" - - - -	11371	21,593,498 – 21,593,598	-	6	107	59.03	-1.58	0.40	0.977007
8276	dm3.chr3L	21,594,778 – 21,594,948	- - - intron="intron;ID=intron_CG7807:1_CG7807:2;Name=AP-2-in;Parent=FBtr0078418;parent_type=mRNA" - - - -	11372	21,594,778 – 21,594,948	+	5	170	93.38	-2.39	0.90	0.969799
8276	dm3.chr3L	21,594,778 – 21,594,948		11373	21,594,778 – 21,594,948	-	5	170	93.38	-2.62	0.93	0.988782
8277	dm3.chr3L	21,595,880 – 21,595,970	- - - intron="intron;ID=intron_CG7807:1_CG7807:2;Name=AP-2-in;Parent=FBtr0078418;parent_type=mRNA" - - - -	11374	21,595,880 – 21,595,970	+	6	100	59.60	-1.78	0.46	0.992612
8277	dm3.chr3L	21,595,880 – 21,595,970		11375	21,595,880 – 21,595,970	-	6	100	59.60	-2.56	0.51	0.999671
8278	dm3.chr3L	21,599,313 – 21,599,410	- - - intron="intron;ID=intron_CG7807:1_CG7807:2;Name=AP-2-in;Parent=FBtr0078418;parent_type=mRNA" - - - -	11376	21,599,313 – 21,599,410	+	7	97	84.05	-2.32	0.69	0.939031
8278	dm3.chr3L	21,599,313 – 21,599,410		11377	21,599,313 – 21,599,410	-	7	97	84.05	-2.53	0.65	0.951594
8279	dm3.chr3L	21,606,281 – 21,606,375	- - - - - - - -	11378	21,606,281 – 21,606,375	+	6	94	78.16	-2.32	0.53	0.953269
8280	dm3.chr3L	21,639,206 – 21,639,306	- - - intron="intron;ID=intron_CG33291:8_CG33291:9;Name=CG33291-in;Parent=FBtr0078427;parent_type=mRNA" - - - -	11379	21,639,206 – 21,639,306	-	6	109	85.00	-2.38	0.63	0.851946
8281	dm3.chr3L	21,646,060 – 21,646,154	- - - intron="intron;ID=intron_CG33291:9_CG33291:2;Name=CG33291-in;Parent=FBtr0078427;parent_type=mRNA" - - - -	11380	21,646,060 – 21,646,152	+	6	100	67.68	-1.91	0.41	0.912078
8281	dm3.chr3L	21,646,060 – 21,646,154		11381	21,646,062 – 21,646,154	+	6	100	67.33	-2.29	0.40	0.973932
8282	dm3.chr3L	21,656,196 – 21,656,283	- - CDS="CDS;ID=CDS_CG33291:3_325;Name=CG33291-cds;Parent=FBtr0078427;parent_type=mRNA" - - - - -	11382	21,656,196 – 21,656,283	+	7	93	73.07	-2.21	0.45	0.967656
8282	dm3.chr3L	21,656,196 – 21,656,283		11383	21,656,196 – 21,656,283	-	7	93	73.07	-1.97	0.44	0.914406
8283	dm3.chr3L	21,659,064 – 21,659,165	- - - - - - - -	11384	21,659,064 – 21,659,165	+	5	109	72.38	-1.58	0.61	0.875319
8284	dm3.chr3L	21,661,785 – 21,661,904	FBnoncoding="pre_miRNA;ID=FBtr0304355;Name=mir-316-RM;Parent=FBgn0262417;Alias=CR42965-RM;Dbxref=FlyBase_Annotation_IDs:CR42965-RM,miRBase:MI0000428" - - - "Rfam_10.0=RF00814;mir-316;AANI01017487.1/102971-103058\|1.3e-25" - - "mirBase_v16=dme-mir-316\|7.6e-46"	11385	21,661,785 – 21,661,886	+	11	111	79.87	-0.97	0.80	0.742024
				11386	21,661,785 – 21,661,886	-	11	111	79.87	-1.55	0.84	0.961672
				11387	21,661,806 – 21,661,904	+	12	116	85.53	-2.13	0.85	0.977079
				11388	21,661,806 – 21,661,904	-	12	116	85.53	-4.11	0.99	0.998955
8285	dm3.chr3L	21,681,662 – 21,681,768	- - - - - - - -	11389	21,681,662 – 21,681,768	-	12	112	84.66	-1.62	0.66	0.576185
8286	dm3.chr3L	21,686,142 – 21,686,234	- - - - - - - -	11390	21,686,142 – 21,686,234	+	5	109	77.64	-1.91	0.74	0.967386
8287	dm3.chr3L	21,696,373 – 21,696,464	- - - intron="intron;ID=intron_CG32447:1_CG32447:2;Name=CG32447-in;Parent=FBtr0078460;parent_type=mRNA" - - - -	11391	21,696,373 – 21,696,464	-	8	99	66.82	-2.00	0.36	0.925842
8288	dm3.chr3L	21,703,032 – 21,703,124	- - - - - - - -	11392	21,703,032 – 21,703,124	+	9	110	61.94	-0.57	0.43	0.525807
8289	dm3.chr3L	21,714,334 – 21,714,437	- - - - - - - -	11393	21,714,334 – 21,714,437	-	6	106	73.89	-2.07	0.40	0.646387
8290	dm3.chr3L	21,736,190 – 21,736,282	- - - - - - - -	11394	21,736,190 – 21,736,282	-	5	92	92.28	-1.62	0.85	0.622056
8291	dm3.chr3L	21,737,964 – 21,738,116	- - - - - - - -	11395	21,737,964 – 21,738,116	-	10	164	81.30	-1.53	0.62	0.605325
8292	dm3.chr3L	21,775,496 – 21,775,570	- - - - - - - -	11396	21,775,496 – 21,775,570	+	7	82	66.17	-0.60	0.50	0.568450
8293	dm3.chr3L	21,783,005 – 21,783,103	- - - - - - - -	11397	21,783,005 – 21,783,103	+	11	99	86.70	-2.36	0.74	0.962107
8294	dm3.chr3L	21,784,877 – 21,784,984	- - - - - - - -	11398	21,784,877 – 21,784,984	+	12	121	91.54	-2.08	0.96	0.981460
8295	dm3.chr3L	21,786,366 – 21,786,523	- - - - - - - -	11399	21,786,366 – 21,786,523	-	9	170	83.80	-1.76	0.69	0.792930
8296	dm3.chr3L	21,789,437 – 21,789,554	- - - - - - - -	11400	21,789,437 – 21,789,554	+	12	120	91.06	-1.25	0.86	0.500000
8297	dm3.chr3L	21,801,042 – 21,801,133	- - - - - - - -	11401	21,801,042 – 21,801,133	-	12	111	73.92	-1.74	0.45	0.761136
8298	dm3.chr3L	21,818,328 – 21,818,431	- - CDS="CDS;ID=CDS_FBgn0037135:3_448;Name=CG7414-cds;Parent=FBtr0078441,FBtr0303245;parent_type=mRNA" - - - - -	11402	21,818,328 – 21,818,431	+	12	107	73.84	-1.19	0.60	0.917719
8298	dm3.chr3L	21,818,328 – 21,818,431		11403	21,818,328 – 21,818,431	-	12	107	73.84	-1.10	0.48	0.548402
8299	dm3.chr3L	21,833,627 – 21,833,728	- - - - - - - -	11404	21,833,627 – 21,833,728	-	10	114	57.92	-1.46	0.28	0.826512
8300	dm3.chr3L	21,841,601 – 21,841,705	- - - intron="intron;ID=intron_FBgn0014362:1_FBgn0014362:2;Name=mub-in;Parent=FBtr0304980,FBtr0304981,FBtr0304982;parent_type=mRNA" - - - -	11405	21,841,601 – 21,841,705	+	6	110	64.10	-1.38	0.38	0.703043
8301	dm3.chr3L	21,844,771 – 21,844,867	- - - intron="intron;ID=intron_FBgn0014362:1_FBgn0014362:2;Name=mub-in;Parent=FBtr0304980,FBtr0304981,FBtr0304982;parent_type=mRNA" - - - -	11406	21,844,771 – 21,844,867	-	5	101	57.99	-0.94	0.55	0.970683
8302	dm3.chr3L	21,846,415 – 21,846,514	- - - intron="intron;ID=intron_FBgn0014362:1_FBgn0014362:2;Name=mub-in;Parent=FBtr0304980,FBtr0304981,FBtr0304982;parent_type=mRNA" - - - -	11407	21,846,415 – 21,846,514	+	5	100	78.97	-2.64	0.63	0.987963
8303	dm3.chr3L	21,847,194 – 21,847,269	FBnoncoding="tRNA;ID=FBtr0078490;Name=tRNA:CR32449-RA;Parent=FBgn0052449;Alias=CR32449-RA;Dbxref=FlyBase_Annotation_IDs:CR32449-RA;score_text=Weakly" tRNAscann="Cys_chr3L_trna34" - intron="intron;ID=intron_FBgn0014362:1_FBgn0014362:2;Name=mub-in;Parent=FBtr0304980,FBtr0304981,FBtr0304982;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010216966.1/262-333\|4.4e-24" - - -	11408	21,847,194 – 21,847,269	+	12	76	85.41	-2.13	0.96	0.992330
8303	dm3.chr3L	21,847,194 – 21,847,269		11409	21,847,194 – 21,847,269	-	12	76	85.41	-1.70	1.03	0.986899
8304	dm3.chr3L	21,852,692 – 21,852,793	- - - intron="intron;ID=intron_FBgn0014362:1_FBgn0014362:2;Name=mub-in;Parent=FBtr0304980,FBtr0304981,FBtr0304982;parent_type=mRNA" - - - -	11410	21,852,692 – 21,852,793	-	7	112	78.10	-1.99	0.43	0.500000
8305	dm3.chr3L	21,865,914 – 21,866,019	- - - intron="intron;ID=intron_FBgn0014362:1_FBgn0014362:2;Name=mub-in;Parent=FBtr0304980,FBtr0304981,FBtr0304982;parent_type=mRNA" - - - -	11411	21,865,914 – 21,866,019	+	6	120	75.69	-1.88	0.49	0.611017
8306	dm3.chr3L	21,870,164 – 21,870,258	- - - intron="intron;ID=intron_FBgn0014362:2_FBgn0014362:4;Name=mub-in;Parent=FBtr0304980,FBtr0304981,FBtr0304982;parent_type=mRNA" - - - -	11412	21,870,164 – 21,870,258	-	6	109	70.14	-0.91	0.58	0.671747
8307	dm3.chr3L	21,872,444 – 21,872,558	- - - intron="intron;ID=intron_FBgn0014362:2_FBgn0014362:4;Name=mub-in;Parent=FBtr0304980,FBtr0304981,FBtr0304982;parent_type=mRNA" - - - -	11413	21,872,444 – 21,872,558	+	5	119	79.91	-1.63	0.64	0.652409
8308	dm3.chr3L	21,886,936 – 21,887,026	- - - intron="intron;ID=intron_FBgn0014362:3_FBgn0014362:4;Name=mub-in;Parent=FBtr0111017,FBtr0078470,FBtr0301364,FBtr0304983,FBtr0304984,FBtr0078468;parent_type=mRNA" - - - -	11414	21,886,936 – 21,887,026	+	8	90	86.50	-2.00	0.70	0.816077
8308	dm3.chr3L	21,886,936 – 21,887,026		11415	21,886,936 – 21,887,026	-	8	90	86.50	-2.39	0.65	0.902725
8309	dm3.chr3L	21,890,017 – 21,890,107	- - - intron="intron;ID=intron_FBgn0014362:3_FBgn0014362:4;Name=mub-in;Parent=FBtr0111017,FBtr0078470,FBtr0301364,FBtr0304983,FBtr0304984,FBtr0078468;parent_type=mRNA" - - - -	11416	21,890,017 – 21,890,107	-	3	91	86.67	-1.71	0.83	0.731914
8310	dm3.chr3L	21,902,148 – 21,902,235	- - - intron="intron;ID=intron_FBgn0014362:4_FBgn0014362:5;Name=mub-in;Parent=FBtr0111017,FBtr0304980,FBtr0078470,FBtr0301364,FBtr0304983,FBtr0304984,FBtr0078468,FBtr0304981,FBtr0304982;parent_type=mRNA" - - - -	11417	21,902,148 – 21,902,235	-	11	110	68.64	-2.52	0.19	0.588235
8311	dm3.chr3L	21,908,765 – 21,908,819	- - - intron="intron;ID=intron_FBgn0014362:10_FBgn0014362:11;Name=mub-in;Parent=FBtr0304984,FBtr0304982;parent_type=mRNA" - - - -	11418	21,908,765 – 21,908,819	-	4	54	98.15	-1.00	1.00	0.684770
8312	dm3.chr3L	21,922,376 – 21,922,468	- - - - - - - -	11419	21,922,376 – 21,922,468	+	8	101	85.70	-3.36	0.63	0.993417
8312	dm3.chr3L	21,922,376 – 21,922,468	- - - - - - - -	11420	21,922,376 – 21,922,468	-	8	101	85.70	-2.39	0.62	0.860662
8313	dm3.chr3L	21,940,992 – 21,941,103	- - CDS="CDS;ID=CDS_CG14562:4_290;Name=CG14562-cds;Parent=FBtr0078472;parent_type=mRNA" - - - - -	11421	21,940,992 – 21,941,103	+	12	114	74.27	-1.68	0.45	0.872927
8314	dm3.chr3L	21,946,299 – 21,946,349	- - - - - - - -	11422	21,946,299 – 21,946,349	-	3	58	80.35	-0.82	1.02	0.865211
8315	dm3.chr3L	21,954,927 – 21,955,075	- - - - - - - -	11423	21,954,927 – 21,955,035	+	3	120	85.67	-1.94	0.75	0.671800
8315	dm3.chr3L	21,954,927 – 21,955,075	- - - - - - - -	11424	21,954,967 – 21,955,075	-	4	120	83.19	-1.60	0.71	0.544095
8316	dm3.chr3L	21,956,435 – 21,956,538	- - - intron="intron;ID=intron_FBgn0029091:4_FBgn0029091:5;Name=CS-2-in;Parent=FBtr0078476,FBtr0114557;parent_type=mRNA" - - - -	11425	21,956,435 – 21,956,538	+	5	104	85.77	-1.98	0.64	0.512115
8316	dm3.chr3L	21,956,435 – 21,956,538		11426	21,956,435 – 21,956,538	-	5	104	85.77	-1.90	0.77	0.836845
8317	dm3.chr3L	21,967,267 – 21,967,382	- - - intron="intron;ID=intron_CG7470:1_CG7470:2;Name=CG7470-in;Parent=FBtr0078477;parent_type=mRNA" - - - -	11427	21,967,267 – 21,967,382	+	5	120	81.86	-2.25	0.70	0.955900
8318	dm3.chr3L	21,978,816 – 21,978,935	- - CDS="CDS;ID=CDS_CG7478:2_334;Name=Act79B-cds;Parent=FBtr0078478;parent_type=mRNA" - - - - -	11428	21,978,816 – 21,978,935	+	15	120	88.22	-1.77	0.75	0.750426
8319	dm3.chr3L	21,983,183 – 21,983,323	- - - - - - - -	11429	21,983,183 – 21,983,323	-	3	180	79.59	-1.30	0.78	0.523454
8320	dm3.chr3L	21,983,540 – 21,983,622	- - - - - - - -	11430	21,983,540 – 21,983,622	+	5	82	93.54	-2.40	0.80	0.881039
8320	dm3.chr3L	21,983,540 – 21,983,622	- - - - - - - -	11431	21,983,540 – 21,983,622	-	5	82	93.54	-1.28	0.90	0.526822
8321	dm3.chr3L	21,987,061 – 21,987,136	- - - - - - - -	11432	21,987,061 – 21,987,136	-	3	75	86.61	-2.38	0.73	0.857541
8322	dm3.chr3L	21,995,798 – 21,995,866	- - - - - - - -	11433	21,995,798 – 21,995,866	-	6	68	81.11	-2.11	0.63	0.878367
8323	dm3.chr3L	22,004,967 – 22,005,034	- - - - - - - -	11434	22,004,967 – 22,005,034	+	3	73	64.79	-2.15	0.42	0.820039
8324	dm3.chr3L	22,006,153 – 22,006,256	- - - - - - - -	11435	22,006,153 – 22,006,256	+	6	113	87.65	-1.70	0.76	0.605109
8324	dm3.chr3L	22,006,153 – 22,006,256	- - - - - - - -	11436	22,006,153 – 22,006,256	-	6	113	87.65	-1.94	0.72	0.666015
8325	dm3.chr3L	22,008,459 – 22,008,538	- - - - - - - -	11437	22,008,459 – 22,008,538	+	5	79	84.86	-2.77	0.74	0.986841
8326	dm3.chr3L	22,034,487 – 22,034,590	- - - intron="intron;ID=intron_FBgn0004514:1_FBgn0004514:2;Name=TyrR-in;Parent=FBtr0078479;parent_type=mRNA" - - - -	11438	22,034,487 – 22,034,590	+	8	120	77.90	-1.46	0.61	0.689683
8327	dm3.chr3L	22,034,698 – 22,034,813	- - - intron="intron;ID=intron_FBgn0004514:1_FBgn0004514:2;Name=TyrR-in;Parent=FBtr0078479;parent_type=mRNA" - - - -	11439	22,034,698 – 22,034,813	+	6	117	77.92	-1.73	0.52	0.545026
8328	dm3.chr3L	22,042,475 – 22,042,579	- - - intron="intron;ID=intron_FBgn0004514:1_FBgn0004514:2;Name=TyrR-in;Parent=FBtr0078479;parent_type=mRNA" - - - -	11440	22,042,475 – 22,042,579	-	4	118	75.98	-2.01	0.60	0.857553
8329	dm3.chr3L	22,043,280 – 22,043,363	- - - intron="intron;ID=intron_FBgn0004514:1_FBgn0004514:2;Name=TyrR-in;Parent=FBtr0078479;parent_type=mRNA" - - - -	11441	22,043,280 – 22,043,363	-	10	100	86.95	-1.94	0.69	0.688321
8330	dm3.chr3L	22,060,573 – 22,060,628	- - - - - - - -	11442	22,060,573 – 22,060,628	-	7	65	66.42	-0.80	0.74	0.959132
8331	dm3.chr3L	22,064,942 – 22,065,064	- - - - - - - -	11443	22,064,942 – 22,065,064	+	5	125	73.07	-1.09	0.59	0.530212
8331	dm3.chr3L	22,064,942 – 22,065,064	- - - - - - - -	11444	22,064,942 – 22,065,064	-	5	125	73.07	-1.57	0.54	0.777040
8332	dm3.chr3L	22,076,252 – 22,076,349	- - - - - - - -	11445	22,076,252 – 22,076,349	+	5	119	75.53	-2.18	0.48	0.767136
8332	dm3.chr3L	22,076,252 – 22,076,349	- - - - - - - -	11446	22,076,252 – 22,076,349	-	5	119	75.53	-2.33	0.46	0.807147
8333	dm3.chr3L	22,097,986 – 22,098,082	- - - - - - - -	11447	22,097,986 – 22,098,082	+	4	101	51.27	-0.80	0.38	0.687824
8333	dm3.chr3L	22,097,986 – 22,098,082	- - - - - - - -	11448	22,097,986 – 22,098,082	-	4	101	51.27	-1.27	0.35	0.880208
8334	dm3.chr3L	22,099,568 – 22,099,658	- - - - - - - -	11449	22,099,568 – 22,099,658	+	9	107	79.21	-1.73	0.66	0.909976
8335	dm3.chr3L	22,105,516 – 22,105,583	- - - - - - - -	11450	22,105,516 – 22,105,583	+	5	68	80.36	-1.57	0.74	0.822663
8336	dm3.chr3L	22,106,167 – 22,106,257	- - - - - - - -	11451	22,106,167 – 22,106,257	-	7	110	64.65	-0.87	0.45	0.594952
8337	dm3.chr3L	22,112,234 – 22,112,324	- - - - - - - -	11452	22,112,234 – 22,112,324	-	6	91	77.16	-1.60	0.61	0.811996
8338	dm3.chr3L	22,117,847 – 22,117,957	- - - - - - - -	11453	22,117,847 – 22,117,957	+	7	114	67.04	-1.47	0.39	0.830181
8338	dm3.chr3L	22,117,847 – 22,117,957	- - - - - - - -	11454	22,117,847 – 22,117,957	-	7	114	67.04	-2.40	0.35	0.984748
8339	dm3.chr3L	22,118,599 – 22,118,720	- - - - - - - -	11455	22,118,599 – 22,118,695	+	5	96	99.38	-1.90	1.00	0.960084
				11456	22,118,599 – 22,118,695	-	5	96	99.38	-1.31	1.00	0.829145
				11457	22,118,624 – 22,118,720	+	6	96	84.10	-1.80	0.77	0.896212
				11458	22,118,624 – 22,118,720	-	6	96	84.10	-1.48	0.72	0.591648
8340	dm3.chr3L	22,121,259 – 22,121,331	- - - - - - - -	11459	22,121,259 – 22,121,331	+	7	83	63.03	-0.50	0.50	0.561039
8341	dm3.chr3L	22,124,410 – 22,124,516	- - - - - - - -	11460	22,124,410 – 22,124,516	-	7	115	72.99	-2.04	0.49	0.937736
8342	dm3.chr3L	22,137,203 – 22,137,289	- - - intron="intron;ID=intron_FBgn0037153:1_FBgn0037153:2;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11461	22,137,203 – 22,137,289	+	3	109	81.04	-1.76	0.80	0.856665
8343	dm3.chr3L	22,139,752 – 22,139,850	- - - intron="intron;ID=intron_FBgn0037153:1_FBgn0037153:2;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11462	22,139,752 – 22,139,850	+	5	98	99.59	-1.78	1.01	0.955359
8344	dm3.chr3L	22,142,251 – 22,142,349	- - - intron="intron;ID=intron_FBgn0037153:1_FBgn0037153:2;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11463	22,142,251 – 22,142,349	-	4	98	92.21	-1.71	0.96	0.937107
8345	dm3.chr3L	22,142,881 – 22,142,981	- - - intron="intron;ID=intron_FBgn0037153:1_FBgn0037153:2;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11464	22,142,881 – 22,142,981	-	8	112	81.35	-1.86	0.81	0.968689
8346	dm3.chr3L	22,146,113 – 22,146,215	- - - intron="intron;ID=intron_FBgn0037153:1_FBgn0037153:2;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11465	22,146,113 – 22,146,215	+	4	110	85.76	-2.83	0.69	0.969747
8347	dm3.chr3L	22,154,001 – 22,154,093	- - - intron="intron;ID=intron_FBgn0037153:1_FBgn0037153:2;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11466	22,154,001 – 22,154,093	-	9	117	68.29	-1.23	0.51	0.824675
8348	dm3.chr3L	22,158,722 – 22,158,881	- - - intron="intron;ID=intron_FBgn0037153:1_FBgn0037153:2;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11467	22,158,722 – 22,158,816	-	10	107	66.65	-1.06	0.41	0.658424
				11468	22,158,748 – 22,158,848	+	6	113	75.62	-1.71	0.54	0.660765
				11469	22,158,748 – 22,158,848	-	6	113	75.62	-1.61	0.62	0.809892
				11470	22,158,778 – 22,158,881	-	6	108	65.27	-2.20	0.27	0.662313
8349	dm3.chr3L	22,161,811 – 22,161,931	- - - intron="intron;ID=intron_FBgn0037153:1_FBgn0037153:2;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11471	22,161,811 – 22,161,931	+	10	120	88.77	-2.39	0.86	0.980498
8350	dm3.chr3L	22,186,328 – 22,186,425	- - - intron="intron;ID=intron_FBgn0037153:2_FBgn0037153:3;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11472	22,186,328 – 22,186,425	+	4	97	81.79	-1.79	0.64	0.563566
8351	dm3.chr3L	22,189,804 – 22,189,898	- - - intron="intron;ID=intron_FBgn0037153:2_FBgn0037153:3;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11473	22,189,804 – 22,189,898	+	6	101	75.09	-2.75	0.53	0.993902
8352	dm3.chr3L	22,192,161 – 22,192,263	- - - intron="intron;ID=intron_FBgn0037153:2_FBgn0037153:3;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11474	22,192,161 – 22,192,263	+	10	109	76.45	-1.79	0.51	0.765715
8353	dm3.chr3L	22,192,898 – 22,192,996	- - - intron="intron;ID=intron_FBgn0037153:2_FBgn0037153:3;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11475	22,192,898 – 22,192,996	+	10	115	84.59	-1.83	0.66	0.696949
8353	dm3.chr3L	22,192,898 – 22,192,996		11476	22,192,898 – 22,192,996	-	10	115	84.59	-2.24	0.67	0.920758
8354	dm3.chr3L	22,198,449 – 22,198,552	- - - intron="intron;ID=intron_FBgn0037153:2_FBgn0037153:3;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11477	22,198,449 – 22,198,552	-	7	112	59.59	-1.73	0.39	0.986913
8355	dm3.chr3L	22,202,438 – 22,202,504	- - - intron="intron;ID=intron_FBgn0037153:3_FBgn0037153:4;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11478	22,202,438 – 22,202,504	-	3	66	57.58	-1.61	0.42	0.812561
8356	dm3.chr3L	22,203,373 – 22,203,475	- - - intron="intron;ID=intron_FBgn0037153:3_FBgn0037153:4;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11479	22,203,373 – 22,203,475	-	11	115	85.68	-1.69	0.71	0.579574
8357	dm3.chr3L	22,212,966 – 22,213,071	- - - intron="intron;ID=intron_FBgn0037153:3_FBgn0037153:4;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11480	22,212,966 – 22,213,071	+	6	109	67.05	-1.22	0.47	0.704381
8358	dm3.chr3L	22,213,219 – 22,213,309	- - - intron="intron;ID=intron_FBgn0037153:3_FBgn0037153:4;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11481	22,213,219 – 22,213,309	+	11	90	86.61	-1.82	0.67	0.562479
8359	dm3.chr3L	22,220,735 – 22,220,831	- - - intron="intron;ID=intron_FBgn0037153:6_FBgn0037153:7;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11482	22,220,735 – 22,220,831	+	4	106	64.36	-1.52	0.42	0.648589
8360	dm3.chr3L	22,224,924 – 22,225,026	- - - intron="intron;ID=intron_FBgn0037153:9_FBgn0037153:10;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11483	22,224,924 – 22,225,016	-	12	107	86.05	-2.66	0.89	0.995351
8360	dm3.chr3L	22,224,924 – 22,225,026		11484	22,224,936 – 22,225,026	-	12	113	85.77	-2.53	0.79	0.987133
8361	dm3.chr3L	22,226,303 – 22,226,398	- - - intron="intron;ID=intron_FBgn0037153:9_FBgn0037153:10;Name=olf413-in;Parent=FBtr0301492;parent_type=mRNA" - - - -	11485	22,226,303 – 22,226,398	+	9	102	77.20	-1.41	0.55	0.646835
8362	dm3.chr3L	22,241,008 – 22,241,099	- - - - - - - -	11486	22,241,008 – 22,241,099	+	8	94	65.99	-1.29	0.42	0.869203
8363	dm3.chr3L	22,260,263 – 22,260,384	- - - - - - - -	11487	22,260,263 – 22,260,363	-	3	116	57.48	-1.76	0.33	0.508733
8363	dm3.chr3L	22,260,263 – 22,260,384	- - - - - - - -	11488	22,260,275 – 22,260,384	+	3	116	61.29	-2.24	0.39	0.907302
8364	dm3.chr3L	22,272,671 – 22,272,797	- - - intron="intron;ID=intron_FBgn0025702:5_FBgn0025702:6;Name=srpk79D-in;Parent=FBtr0078496,FBtr0304724,FBtr0303599,FBtr0303600;parent_type=mRNA" - - - -	11489	22,272,671 – 22,272,761	-	12	109	62.40	-0.63	0.45	0.767577
8364	dm3.chr3L	22,272,671 – 22,272,797		11490	22,272,698 – 22,272,797	-	11	116	71.60	-1.30	0.49	0.768519
8365	dm3.chr3L	22,295,790 – 22,295,880	- - - intron="intron;ID=intron_FBgn0004449:5_FBgn0004449:4;Name=Ten-m-in;Parent=FBtr0306107;parent_type=mRNA" - - - -	11491	22,295,790 – 22,295,880	-	12	106	58.71	-1.04	0.36	0.851983
8366	dm3.chr3L	22,305,678 – 22,305,812	- - - intron="intron;ID=intron_FBgn0004449:12_FBgn0004449:11;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11492	22,305,678 – 22,305,812	+	5	134	86.12	-2.07	0.75	0.868161
8366	dm3.chr3L	22,305,678 – 22,305,812		11493	22,305,678 – 22,305,812	-	5	134	86.12	-2.00	0.65	0.549350
8367	dm3.chr3L	22,309,406 – 22,309,458	- - - intron="intron;ID=intron_FBgn0004449:12_FBgn0004449:11;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11494	22,309,406 – 22,309,458	+	8	55	68.68	-0.59	0.60	0.809477
8368	dm3.chr3L	22,315,272 – 22,315,378	- - - intron="intron;ID=intron_FBgn0004449:12_FBgn0004449:11;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11495	22,315,272 – 22,315,378	-	5	106	82.73	-2.35	0.58	0.805505
8369	dm3.chr3L	22,318,833 – 22,318,915	- - - intron="intron;ID=intron_FBgn0004449:12_FBgn0004449:11;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11496	22,318,833 – 22,318,915	+	5	96	55.05	-1.86	0.40	0.992595
8370	dm3.chr3L	22,319,949 – 22,320,039	- - - intron="intron;ID=intron_FBgn0004449:12_FBgn0004449:11;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11497	22,319,949 – 22,320,039	-	4	90	91.18	-3.05	0.61	0.846105
8371	dm3.chr3L	22,325,291 – 22,325,393	- - - - - - - -	11498	22,325,291 – 22,325,393	-	6	106	80.24	-2.07	0.70	0.964879
8372	dm3.chr3L	22,325,918 – 22,326,024	- - - - - - - -	11499	22,325,918 – 22,326,024	-	4	107	79.34	-2.15	0.61	0.870219
8373	dm3.chr3L	22,326,107 – 22,326,215	- - - - - - - -	11500	22,326,107 – 22,326,215	-	5	117	83.77	-2.43	0.62	0.895286
8374	dm3.chr3L	22,328,804 – 22,328,910	- - - - - - - -	11501	22,328,804 – 22,328,910	-	4	111	80.70	-1.64	0.67	0.601929
8375	dm3.chr3L	22,329,752 – 22,329,864	- - - - - - - -	11502	22,329,752 – 22,329,864	+	7	119	73.07	-1.87	0.36	0.561303
8375	dm3.chr3L	22,329,752 – 22,329,864	- - - - - - - -	11503	22,329,752 – 22,329,864	-	7	119	73.07	-1.62	0.58	0.958737
8376	dm3.chr3L	22,334,221 – 22,334,345	- - - intron="intron;ID=intron_FBgn0004449:13_FBgn0004449:12;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11504	22,334,221 – 22,334,311	-	5	90	95.78	-1.75	0.94	0.886086
8376	dm3.chr3L	22,334,221 – 22,334,345		11505	22,334,245 – 22,334,345	-	7	106	82.00	-1.73	0.65	0.750176
8377	dm3.chr3L	22,350,251 – 22,350,333	- - - intron="intron;ID=intron_FBgn0004449:13_FBgn0004449:12;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11506	22,350,251 – 22,350,333	+	6	84	72.98	-0.90	0.56	0.513709
8378	dm3.chr3L	22,360,530 – 22,360,600	- - - intron="intron;ID=intron_FBgn0004449:13_FBgn0004449:12;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11507	22,360,530 – 22,360,600	-	4	70	91.19	-1.26	0.96	0.818457
8379	dm3.chr3L	22,361,308 – 22,361,383	- - - intron="intron;ID=intron_FBgn0004449:13_FBgn0004449:12;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11508	22,361,308 – 22,361,383	+	8	75	74.01	-2.18	0.43	0.964909
8380	dm3.chr3L	22,374,280 – 22,374,409	- - - intron="intron;ID=intron_FBgn0004449:13_FBgn0004449:12;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11509	22,374,280 – 22,374,370	+	8	93	76.64	-1.58	0.46	0.500000
				11510	22,374,280 – 22,374,370	-	8	93	76.64	-1.76	0.55	0.899757
				11511	22,374,306 – 22,374,409	-	5	106	89.53	-1.63	0.82	0.630571
8381	dm3.chr3L	22,376,001 – 22,376,094	- - - intron="intron;ID=intron_FBgn0004449:13_FBgn0004449:12;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11512	22,376,001 – 22,376,094	+	12	115	78.61	-1.68	0.57	0.799258
8382	dm3.chr3L	22,380,467 – 22,380,599	- - - intron="intron;ID=intron_FBgn0004449:13_FBgn0004449:12;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11513	22,380,467 – 22,380,562	-	10	96	81.43	-2.14	0.60	0.962941
				11514	22,380,481 – 22,380,599	+	12	120	89.79	-1.64	0.81	0.758397
				11515	22,380,481 – 22,380,599	-	12	120	89.79	-2.02	0.82	0.927138
8383	dm3.chr3L	22,388,474 – 22,388,588	- - - intron="intron;ID=intron_FBgn0004449:13_FBgn0004449:12;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11516	22,388,474 – 22,388,588	+	6	118	76.65	-1.06	0.68	0.562240
8384	dm3.chr3L	22,389,273 – 22,389,399	- - - intron="intron;ID=intron_FBgn0004449:13_FBgn0004449:12;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11517	22,389,273 – 22,389,399	-	5	127	83.83	-1.63	0.75	0.662350
8385	dm3.chr3L	22,392,599 – 22,392,715	- - - intron="intron;ID=intron_FBgn0004449:13_FBgn0004449:12;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11518	22,392,599 – 22,392,690	+	3	109	77.36	-1.13	0.86	0.713477
				11519	22,392,618 – 22,392,715	+	5	97	84.83	-2.03	0.66	0.669871
				11520	22,392,618 – 22,392,715	-	5	97	84.83	-2.40	0.65	0.875359
8386	dm3.chr3L	22,395,697 – 22,395,795	- - - intron="intron;ID=intron_FBgn0004449:13_FBgn0004449:12;Name=Ten-m-in;Parent=FBtr0078509,FBtr0306107;parent_type=mRNA" - - - -	11521	22,395,697 – 22,395,795	+	5	98	77.03	-1.38	0.70	0.830224
8387	dm3.chr3L	22,401,066 – 22,401,166	- - - - - - - -	11522	22,401,066 – 22,401,166	+	4	103	73.03	-2.35	0.38	0.705747
8388	dm3.chr3L	22,404,049 – 22,404,145	- - - - - - - -	11523	22,404,049 – 22,404,145	-	3	100	88.00	-1.92	0.79	0.702049
8389	dm3.chr3L	22,409,474 – 22,409,605	- - - - - - - -	11524	22,409,474 – 22,409,576	+	9	107	87.61	-2.44	0.63	0.879614
				11525	22,409,474 – 22,409,576	-	9	107	87.61	-3.39	0.84	0.998137
				11526	22,409,487 – 22,409,605	+	12	119	92.20	-2.59	0.80	0.967281
				11527	22,409,487 – 22,409,605	-	12	119	92.20	-3.38	0.76	0.993587
8390	dm3.chr3L	22,411,730 – 22,411,849	- - - - - - - -	11528	22,411,730 – 22,411,843	+	5	118	61.48	-2.16	0.33	0.967834
8390	dm3.chr3L	22,411,730 – 22,411,849	- - - - - - - -	11529	22,411,739 – 22,411,849	+	4	113	67.27	-2.29	0.38	0.889096
8391	dm3.chr3L	22,422,562 – 22,422,655	- - - - - - - -	11530	22,422,562 – 22,422,655	+	4	93	79.49	-2.07	0.74	0.933351
8391	dm3.chr3L	22,422,562 – 22,422,655	- - - - - - - -	11531	22,422,562 – 22,422,655	-	4	93	79.49	-2.08	0.73	0.928206
8392	dm3.chr3L	22,440,098 – 22,440,151	- - - - - - - -	11532	22,440,098 – 22,440,151	+	6	54	75.66	-1.15	0.64	0.722732
8393	dm3.chr3L	22,446,811 – 22,446,914	- - - - - - - -	11533	22,446,811 – 22,446,914	+	9	105	87.63	-2.58	0.72	0.971159
8394	dm3.chr3L	22,446,961 – 22,447,057	- - - - - - - -	11534	22,446,961 – 22,447,057	-	12	121	67.89	-1.78	0.33	0.641834
8395	dm3.chr3L	22,457,817 – 22,457,908	- - - - - - - -	11535	22,457,817 – 22,457,908	+	3	95	85.21	-2.39	0.67	0.780975
8396	dm3.chr3L	22,467,204 – 22,467,301	- - - - - - - -	11536	22,467,204 – 22,467,301	+	7	108	63.43	-1.70	0.32	0.690420
8397	dm3.chr3L	22,471,769 – 22,471,885	- - - - - - - -	11537	22,471,769 – 22,471,885	+	12	120	93.35	-1.59	0.84	0.592644
8398	dm3.chr3L	22,472,775 – 22,472,888	- - - - - - - -	11538	22,472,775 – 22,472,879	+	12	116	61.11	-1.02	0.35	0.755172
8398	dm3.chr3L	22,472,775 – 22,472,888	- - - - - - - -	11539	22,472,784 – 22,472,888	+	12	116	60.58	-1.27	0.35	0.900673
8399	dm3.chr3L	22,477,048 – 22,477,123	- - - - - - - -	11540	22,477,048 – 22,477,123	-	6	85	69.63	-1.21	0.57	0.859255
8400	dm3.chr3L	22,479,686 – 22,479,778	- - - - - - - -	11541	22,479,686 – 22,479,778	+	10	101	78.09	-1.82	0.45	0.591069
8401	dm3.chr3L	22,483,817 – 22,483,876	- - - - - - - -	11542	22,483,817 – 22,483,876	-	3	59	90.80	-1.57	0.90	0.762686
8402	dm3.chr3L	22,489,141 – 22,489,242	- - - - - - - -	11543	22,489,141 – 22,489,242	+	4	109	53.92	-1.97	0.23	0.693135
8402	dm3.chr3L	22,489,141 – 22,489,242	- - - - - - - -	11544	22,489,141 – 22,489,242	-	4	109	53.92	-2.20	0.17	0.530326
8403	dm3.chr3L	22,494,276 – 22,494,359	- - - - - - - -	11545	22,494,276 – 22,494,359	-	9	92	64.21	-0.26	0.52	0.533711
8404	dm3.chr3L	22,511,286 – 22,511,409	FBnoncoding="pre_miRNA;ID=FBtr0304192;Name=mir-957-RM;Parent=FBgn0262182;Alias=CR42889-RM;Dbxref=FlyBase_Annotation_IDs:CR42889-RM,miRBase:MI0005811" - - - - - - "mirBase_v16=dsi-mir-957\|8.8e-55"	11546	22,511,286 – 22,511,409	+	11	139	81.02	-1.74	0.66	0.873463
8404	dm3.chr3L	22,511,286 – 22,511,409		11547	22,511,286 – 22,511,409	-	11	139	81.02	-2.24	0.78	0.989855
8405	dm3.chr3L	22,511,704 – 22,511,819	- - - - - - - -	11548	22,511,704 – 22,511,819	-	5	115	89.64	-2.71	0.70	0.924630
8406	dm3.chr3L	22,522,793 – 22,522,885	- - - - - - - -	11549	22,522,793 – 22,522,885	+	11	98	63.65	-1.86	0.36	0.985665
8406	dm3.chr3L	22,522,793 – 22,522,885	- - - - - - - -	11550	22,522,793 – 22,522,885	-	11	98	63.65	-1.07	0.39	0.864035
8407	dm3.chr3L	22,523,452 – 22,523,512	- - - - - - - -	11551	22,523,452 – 22,523,512	+	7	68	74.11	-1.06	0.57	0.608508
8408	dm3.chr3L	22,533,720 – 22,533,850	- - - - - - - -	11552	22,533,720 – 22,533,831	-	9	117	65.44	-2.14	0.31	0.937991
8408	dm3.chr3L	22,533,720 – 22,533,850	- - - - - - - -	11553	22,533,755 – 22,533,850	-	12	119	75.29	-1.82	0.52	0.872387
8409	dm3.chr3L	22,538,253 – 22,538,366	- - - - - - - -	11554	22,538,253 – 22,538,366	-	3	113	89.64	-3.11	0.73	0.971408
8410	dm3.chr3L	22,538,368 – 22,538,464	- - - - - - - -	11555	22,538,368 – 22,538,464	-	3	96	93.71	-2.00	0.91	0.911410
8411	dm3.chr3L	22,548,594 – 22,548,653	- - - - - - - -	11556	22,548,594 – 22,548,653	-	3	59	67.80	-0.21	0.93	0.536118
8412	dm3.chr3L	22,557,856 – 22,557,949	- - - - - - - -	11557	22,557,856 – 22,557,949	-	3	120	73.87	-1.36	0.73	0.618837
8413	dm3.chr3L	22,565,588 – 22,565,678	- - - - - - - -	11558	22,565,588 – 22,565,678	-	12	107	50.78	-1.34	0.20	0.523808
8414	dm3.chr3L	22,569,921 – 22,570,035	- - - - - - - -	11559	22,569,921 – 22,570,012	-	9	98	92.32	-2.22	0.89	0.963058
8414	dm3.chr3L	22,569,921 – 22,570,035	- - - - - - - -	11560	22,569,939 – 22,570,035	-	9	119	84.22	-2.52	0.79	0.990069
8415	dm3.chr3L	22,582,273 – 22,582,361	- - - intron="intron;ID=intron_FBgn0037171:3_FBgn0037171:2;Name=CG14459-in;Parent=FBtr0113185;parent_type=mRNA" - - - -	11561	22,582,273 – 22,582,361	+	10	105	64.90	-0.94	0.41	0.615360
8416	dm3.chr3L	22,586,091 – 22,586,183	- - - intron="intron;ID=intron_FBgn0037171:3_FBgn0037171:2;Name=CG14459-in;Parent=FBtr0113185;parent_type=mRNA" - - - -	11562	22,586,091 – 22,586,183	+	12	102	88.54	-2.00	0.80	0.906919
8417	dm3.chr3L	22,589,754 – 22,589,833	- - - intron="intron;ID=intron_FBgn0037171:4_FBgn0037171:3;Name=CG14459-in;Parent=FBtr0113185;parent_type=mRNA" - - - -	11563	22,589,754 – 22,589,833	+	5	90	81.66	-1.36	0.90	0.901841
8418	dm3.chr3L	22,594,492 – 22,594,558	- - - intron="intron;ID=intron_FBgn0037171:4_FBgn0037171:3;Name=CG14459-in;Parent=FBtr0113185;parent_type=mRNA" - - - -	11564	22,594,492 – 22,594,558	+	5	70	82.14	-1.80	0.74	0.835979
8419	dm3.chr3L	22,607,990 – 22,608,092	- - - - - - - -	11565	22,607,990 – 22,608,092	+	6	102	75.03	-1.61	0.60	0.777667
8420	dm3.chr3L	22,622,884 – 22,622,979	- - - - - - - -	11566	22,622,884 – 22,622,979	+	6	105	77.08	-2.01	0.46	0.658500
8421	dm3.chr3L	22,624,358 – 22,624,473	- - - - - - - -	11567	22,624,358 – 22,624,473	+	12	119	76.03	-0.94	0.58	0.546931
8422	dm3.chr3L	22,635,547 – 22,635,638	- - - - - - - -	11568	22,635,547 – 22,635,638	+	5	116	58.10	-2.26	0.24	0.634377
8422	dm3.chr3L	22,635,547 – 22,635,638	- - - - - - - -	11569	22,635,547 – 22,635,638	-	5	116	58.10	-1.68	0.31	0.506870
8423	dm3.chr3L	22,641,790 – 22,641,841	- - CDS="CDS;ID=CDS_FBgn0053770:1_360;Name=CG33770-cds;Parent=FBtr0290125;parent_type=mRNA" - - - - -	11570	22,641,790 – 22,641,841	+	6	55	65.61	-1.33	0.72	0.991713
8423	dm3.chr3L	22,641,790 – 22,641,841		11571	22,641,790 – 22,641,841	-	6	55	65.61	-1.33	0.42	0.735965
8424	dm3.chr3L	22,646,239 – 22,646,336	- - - - - - - -	11572	22,646,239 – 22,646,336	+	10	111	81.95	-0.92	0.83	0.597412
8425	dm3.chr3L	22,651,158 – 22,651,270	- - - - - - - -	11573	22,651,158 – 22,651,270	+	10	114	88.92	-3.38	0.71	0.993719
8425	dm3.chr3L	22,651,158 – 22,651,270	- - - - - - - -	11574	22,651,158 – 22,651,270	-	10	114	88.92	-2.64	0.57	0.753577
8426	dm3.chr3L	22,651,913 – 22,651,968	- - - - - - - -	11575	22,651,913 – 22,651,968	+	7	57	66.41	-0.98	0.62	0.978566
8426	dm3.chr3L	22,651,913 – 22,651,968	- - - - - - - -	11576	22,651,913 – 22,651,968	-	7	57	66.41	-0.46	0.53	0.661999
8427	dm3.chr3L	22,662,378 – 22,662,484	FBnoncoding="pre_miRNA;ID=FBtr0304337;Name=mir-958-RM;Parent=FBgn0262249;Alias=CR42956-RM;Dbxref=FlyBase_Annotation_IDs:CR42956-RM,miRBase:MI0005812" - - - - - - "mirBase_v16=dme-mir-958\|1.1e-47"	11577	22,662,378 – 22,662,484	+	12	108	86.04	-1.92	0.79	0.937889
8427	dm3.chr3L	22,662,378 – 22,662,484		11578	22,662,378 – 22,662,484	-	12	108	86.04	-3.36	0.63	0.995555
8428	dm3.chr3L	22,671,042 – 22,671,136	- - - intron="intron;ID=intron_CG14457:1_CG14457:2;Name=CG14457-in;Parent=FBtr0078517,FBtr0100669;parent_type=mRNA" - - - -	11579	22,671,042 – 22,671,136	-	5	97	91.44	-1.75	0.89	0.856070
8429	dm3.chr3L	22,674,115 – 22,674,165	- - - - - - - -	11580	22,674,115 – 22,674,165	+	10	53	87.26	-1.76	0.68	0.565188
8430	dm3.chr3L	22,675,736 – 22,675,829	- - - - - - - -	11581	22,675,736 – 22,675,829	+	5	93	84.84	-1.70	0.72	0.574707
8431	dm3.chr3L	22,679,454 – 22,679,520	- - - - - - - -	11582	22,679,454 – 22,679,520	+	5	67	87.31	-1.74	0.87	0.898763
8432	dm3.chr3L	22,685,769 – 22,685,838	- - - - - - - -	11583	22,685,769 – 22,685,838	-	4	70	63.78	-1.13	0.62	0.909485
8433	dm3.chr3L	22,694,545 – 22,694,676	- - - - - - - -	11584	22,694,545 – 22,694,645	-	6	116	76.68	-1.41	0.55	0.516477
				11585	22,694,571 – 22,694,676	+	6	109	77.86	-1.76	0.56	0.800617
				11586	22,694,571 – 22,694,676	-	6	109	77.86	-2.11	0.53	0.905815
8434	dm3.chr3L	22,700,363 – 22,700,461	- - - - - - - -	11587	22,700,363 – 22,700,461	+	6	106	59.06	-1.40	0.30	0.605377
8435	dm3.chr3L	22,724,911 – 22,725,030	- - - intron="intron;ID=intron_FBgn0037185:1_FBgn0037185:2;Name=CG11367-in;Parent=FBtr0078528;parent_type=mRNA" - - - -	11588	22,724,911 – 22,725,004	+	6	101	68.05	-0.61	0.55	0.554306
8435	dm3.chr3L	22,724,911 – 22,725,030		11589	22,724,939 – 22,725,030	+	6	104	65.05	-1.84	0.40	0.966053
8436	dm3.chr3L	22,731,518 – 22,731,636	- - - - - - - -	11590	22,731,518 – 22,731,636	+	7	119	66.95	-1.09	0.47	0.706138
8437	dm3.chr3L	22,733,742 – 22,733,894	- - CDS="CDS;ID=CDS_FBgn0010830:4_454;Name=l(3)04053-cds;Parent=FBtr0078535;parent_type=mRNA" - - - - -	11591	22,733,742 – 22,733,844	+	11	102	60.54	-0.94	0.31	0.563117
				11592	22,733,779 – 22,733,870	+	11	114	69.76	-2.05	0.51	0.992165
				11593	22,733,779 – 22,733,870	-	11	114	69.76	-1.61	0.38	0.695936
				11594	22,733,804 – 22,733,894	+	10	90	74.93	-1.45	0.59	0.949940
8438	dm3.chr3L	22,748,853 – 22,748,922	- - - intron="intron;ID=intron_FBgn0052451:1_FBgn0052451:7;Name=SPoCk-in;Parent=FBtr0078533;parent_type=mRNA" - - - -	11595	22,748,853 – 22,748,922	-	7	69	62.03	-0.64	0.42	0.623537
8439	dm3.chr3L	22,751,922 – 22,751,991	- - - intron="intron;ID=intron_FBgn0052451:1_FBgn0052451:7;Name=SPoCk-in;Parent=FBtr0078533;parent_type=mRNA" - - - -	11596	22,751,922 – 22,751,991	+	5	70	67.16	-1.82	0.36	0.626059
8439	dm3.chr3L	22,751,922 – 22,751,991		11597	22,751,922 – 22,751,991	-	5	70	67.16	-1.86	0.39	0.791449
8440	dm3.chr3L	22,753,089 – 22,753,182	- - CDS="CDS;ID=CDS_FBgn0052451:2_426;Name=SPoCk-cds;Parent=FBtr0113437;parent_type=mRNA" intron="intron;ID=intron_FBgn0052451:1_FBgn0052451:7;Name=SPoCk-in;Parent=FBtr0078533;parent_type=mRNA" - - - -	11598	22,753,089 – 22,753,182	+	7	120	63.64	-1.46	0.37	0.500000
8441	dm3.chr3L	22,766,564 – 22,766,640	- - - intron="intron;ID=intron_FBgn0052451:2_FBgn0052451:7;Name=SPoCk-in;Parent=FBtr0113437;parent_type=mRNA" - - - -	11599	22,766,564 – 22,766,640	+	5	77	90.26	-3.04	0.97	0.997564
8442	dm3.chr3L	22,775,089 – 22,775,192	- - - intron="intron;ID=intron_FBgn0052451:7_FBgn0052451:8;Name=SPoCk-in;Parent=FBtr0078531,FBtr0078532,FBtr0078533,FBtr0113437,FBtr0302134;parent_type=mRNA" - - - -	11600	22,775,089 – 22,775,192	+	3	114	86.75	-2.70	0.69	0.903251
8443	dm3.chr3L	22,793,348 – 22,793,465	- - CDS="CDS;ID=CDS_FBgn0027339:7_461;Name=jim-cds;Parent=FBtr0078582,FBtr0078581,FBtr0304985;parent_type=mRNA" - - - - -	11601	22,793,348 – 22,793,465	+	12	120	70.39	-0.37	0.61	0.638964
8444	dm3.chr3L	22,795,458 – 22,795,516	- - - intron="intron;ID=intron_FBgn0027339:10_FBgn0027339:9;Name=jim-in;Parent=FBtr0304985;parent_type=mRNA" - - - -	11602	22,795,458 – 22,795,516	-	3	58	54.71	-1.24	0.58	0.965431
8445	dm3.chr3L	22,813,681 – 22,813,774	- - - intron="intron;ID=intron_FBgn0027339:10_FBgn0027339:9;Name=jim-in;Parent=FBtr0304985;parent_type=mRNA" - - - -	11603	22,813,681 – 22,813,774	+	5	101	71.89	-2.28	0.40	0.822301
8446	dm3.chr3L	22,823,056 – 22,823,167	- - - - - - - -	11604	22,823,056 – 22,823,167	-	5	112	87.17	-1.39	0.87	0.733873
8447	dm3.chr3L	22,836,362 – 22,836,438	FBnoncoding="tRNA;ID=FBtr0078547;Name=tRNA:CR32456-RA;Parent=FBgn0052456;Alias=CR32456-RA;Dbxref=FlyBase_Annotation_IDs:CR32456-RA;score_text=Weakly" tRNAscann="Leu_chr3L_trna32" - - "Rfam_10.0=RF00005;tRNA;AASV01042675.1/11-93\|3.2e-34" - - -	11605	22,836,362 – 22,836,438	-	13	77	98.25	-0.99	0.98	0.577961
8448	dm3.chr3L	22,840,807 – 22,840,905	FBnoncoding="tRNA;ID=FBtr0078580;Name=tRNA:CR32460-RA;Parent=FBgn0052460;Alias=CR32460-RA;Dbxref=FlyBase_Annotation_IDs:CR32460-RA;score_text=Weakly" tRNAscann="Glu_chr3L_trna33" - - "Rfam_10.0=RF00005;tRNA;AAPU01010225.1/272161-272232\|2.6e-29" - - -	11606	22,840,807 – 22,840,905	+	12	104	81.71	-1.69	0.90	0.978692
8448	dm3.chr3L	22,840,807 – 22,840,905		11607	22,840,807 – 22,840,905	-	12	104	81.71	-1.22	0.88	0.916417
8449	dm3.chr3L	22,843,245 – 22,843,304	- - - - - - - -	11608	22,843,245 – 22,843,304	-	6	61	70.61	-1.42	0.46	0.614451
8450	dm3.chr3L	22,844,425 – 22,844,501	- - - - - - - -	11609	22,844,425 – 22,844,501	+	6	80	72.71	-1.74	0.63	0.975044
8451	dm3.chr3L	22,853,581 – 22,853,635	- - - - - - - -	11610	22,853,581 – 22,853,635	-	4	66	54.05	-2.51	0.45	0.998813
8452	dm3.chr3L	22,872,470 – 22,872,545	- - CDS="CDS;ID=CDS_CG11115:2_280;Name=Ssl1-cds;Parent=FBtr0078554;parent_type=mRNA" - - - - -	11611	22,872,470 – 22,872,545	+	11	75	75.90	-1.57	0.46	0.569142
8453	dm3.chr3L	22,881,907 – 22,881,997	- - - intron="intron;ID=intron_CG11128:4_CG11128:2;Name=slif-in;Parent=FBtr0078556;parent_type=mRNA" - - - -	11612	22,881,907 – 22,881,997	+	3	90	66.41	-2.31	0.57	0.979988
8454	dm3.chr3L	22,883,083 – 22,883,180	- - - intron="intron;ID=intron_CG11128:5_CG11128:2;Name=slif-in;Parent=FBtr0078557;parent_type=mRNA" - - - -	11613	22,883,083 – 22,883,180	-	7	107	68.27	-1.88	0.34	0.761438
8455	dm3.chr3L	22,892,462 – 22,892,559	- - - - - - - -	11614	22,892,462 – 22,892,559	+	6	97	58.30	-1.11	0.47	0.952768
8456	dm3.chr3L	22,893,550 – 22,893,646	- - - - - - - -	11615	22,893,550 – 22,893,646	-	6	97	72.12	-0.73	0.63	0.519326
8457	dm3.chr3L	22,904,717 – 22,904,809	- - - intron="intron;ID=intron_FBgn0037206:1_FBgn0037206:2;Name=CG12768-in;Parent=FBtr0078560;parent_type=mRNA" - - - -	11616	22,904,717 – 22,904,809	-	5	94	74.49	-1.06	0.62	0.555499
8458	dm3.chr3L	22,921,700 – 22,921,775	- - - - - - - -	11617	22,921,700 – 22,921,775	-	7	79	71.46	-1.33	0.46	0.591304
8459	dm3.chr3L	22,925,175 – 22,925,266	- - - - - - - -	11618	22,925,175 – 22,925,266	-	7	96	65.58	-0.98	0.44	0.780178
8460	dm3.chr3L	22,933,355 – 22,933,445	- - - - - - - -	11619	22,933,355 – 22,933,445	-	4	90	67.29	-1.72	0.50	0.915793
8461	dm3.chr3L	22,933,966 – 22,934,023	- - - - - - - -	11620	22,933,966 – 22,934,023	+	5	58	60.21	-1.69	0.53	0.989728
8462	dm3.chr3L	22,983,418 – 22,983,483	- - - - - - - -	11621	22,983,418 – 22,983,483	+	5	73	47.99	-1.19	0.40	0.916998
8463	dm3.chr3L	23,007,755 – 23,007,858	- - CDS="CDS;ID=CDS_FBgn0262509:14_461;Name=nrm-cds;Parent=FBtr0304834;parent_type=mRNA" - - - - -	11622	23,007,755 – 23,007,858	-	12	106	72.29	-1.31	0.42	0.645706
8464	dm3.chr3L	23,013,993 – 23,014,048	- - - intron="intron;ID=intron_FBgn0262509:21_FBgn0262509:22;Name=nrm-in;Parent=FBtr0304834,FBtr0304836;parent_type=mRNA" - - - -	11623	23,013,993 – 23,014,048	+	6	62	70.34	-1.49	0.47	0.756880
8465	dm3.chr3L	23,041,667 – 23,041,744	- - - - - - - -	11624	23,041,667 – 23,041,744	-	4	79	60.68	-1.03	0.57	0.946321
8466	dm3.chr3L	23,112,521 – 23,112,631	- - - - - - - -	11625	23,112,521 – 23,112,631	+	4	110	52.14	-2.44	0.45	0.999452
8466	dm3.chr3L	23,112,521 – 23,112,631	- - - - - - - -	11626	23,112,521 – 23,112,631	-	4	110	52.14	-2.12	0.45	0.998533
8467	dm3.chr3L	23,127,019 – 23,127,101	- - - - - - - -	11627	23,127,019 – 23,127,101	-	5	85	72.34	-0.89	0.66	0.584934
8468	dm3.chr3L	23,128,172 – 23,128,265	- - - - - - - -	11628	23,128,172 – 23,128,265	-	4	107	64.67	-1.88	0.46	0.954311
8469	dm3.chr3L	23,128,515 – 23,128,609	- - - - - - - -	11629	23,128,515 – 23,128,609	-	3	95	62.64	-2.02	0.51	0.947344
8470	dm3.chr3L	23,133,116 – 23,133,187	- - - - - - - -	11630	23,133,116 – 23,133,187	+	5	71	70.24	-0.90	0.79	0.925306
8470	dm3.chr3L	23,133,116 – 23,133,187	- - - - - - - -	11631	23,133,116 – 23,133,187	-	5	71	70.24	-1.76	0.80	0.993676
8471	dm3.chr3L	23,138,049 – 23,138,126	- - - - - - - -	11632	23,138,049 – 23,138,126	+	4	78	67.47	-0.58	0.78	0.835168
8472	dm3.chr3L	23,157,158 – 23,157,212	- - - - - - - -	11633	23,157,158 – 23,157,212	+	3	58	56.32	-0.58	0.56	0.563445
8473	dm3.chr3L	23,180,553 – 23,180,605	- - - - - - - -	11634	23,180,553 – 23,180,605	-	5	56	58.66	-1.36	0.31	0.647359
8474	dm3.chr3L	23,231,303 – 23,231,354	- - - intron="intron;ID=intron_FBgn0037212:4_FBgn0037212:5;Name=nAcRalpha-80B-in;Parent=FBtr0300118;parent_type=mRNA" - - - -	11635	23,231,303 – 23,231,354	+	3	53	56.69	-1.60	0.92	0.994031
8474	dm3.chr3L	23,231,303 – 23,231,354		11636	23,231,303 – 23,231,354	-	3	53	56.69	-1.22	1.07	0.963706
8475	dm3.chr3L	23,243,754 – 23,243,809	- - - intron="intron;ID=intron_FBgn0037212:5_FBgn0037212:6;Name=nAcRalpha-80B-in;Parent=FBtr0300118;parent_type=mRNA" - - - -	11637	23,243,754 – 23,243,809	+	5	68	50.00	-1.99	0.25	0.909849
8476	dm3.chr3L	23,245,557 – 23,245,626	- - - intron="intron;ID=intron_FBgn0037212:5_FBgn0037212:6;Name=nAcRalpha-80B-in;Parent=FBtr0300118;parent_type=mRNA" - - - -	11638	23,245,557 – 23,245,626	+	3	72	60.77	-2.49	0.85	0.998431
8476	dm3.chr3L	23,245,557 – 23,245,626		11639	23,245,557 – 23,245,626	-	3	72	60.77	-2.34	0.69	0.997912
8477	dm3.chr3L	23,247,330 – 23,247,405	- - - intron="intron;ID=intron_FBgn0037212:5_FBgn0037212:6;Name=nAcRalpha-80B-in;Parent=FBtr0300118;parent_type=mRNA" - - - -	11640	23,247,330 – 23,247,405	+	4	91	59.62	-2.37	0.22	0.583445
8478	dm3.chr3L	23,247,765 – 23,247,816	- - - intron="intron;ID=intron_FBgn0037212:5_FBgn0037212:6;Name=nAcRalpha-80B-in;Parent=FBtr0300118;parent_type=mRNA" - - - -	11641	23,247,765 – 23,247,816	-	3	51	90.85	-1.90	0.84	0.760389
8479	dm3.chr3L	23,339,403 – 23,339,637	- - - - - - - -	11642	23,339,403 – 23,339,512	-	4	116	54.23	-1.41	0.29	0.577511
				11643	23,339,442 – 23,339,543	-	4	110	54.19	-2.32	0.40	0.997981
				11644	23,339,446 – 23,339,547	-	4	113	54.77	-2.20	0.34	0.983891
				11645	23,339,547 – 23,339,637	-	5	101	55.17	-1.61	0.25	0.543768
8480	dm3.chr3L	23,365,743 – 23,365,818	- - - - - - - -	11646	23,365,743 – 23,365,818	+	3	76	55.80	-0.84	0.51	0.697821
8481	dm3.chr3L	23,372,361 – 23,372,425	- - - - - - - -	11647	23,372,361 – 23,372,425	+	6	66	60.22	-0.94	0.50	0.945651
8481	dm3.chr3L	23,372,361 – 23,372,425	- - - - - - - -	11648	23,372,361 – 23,372,425	-	6	66	60.22	-2.09	0.57	0.999519
8482	dm3.chr3L	23,414,107 – 23,414,187	- - - - - - - -	11649	23,414,107 – 23,414,187	-	3	80	81.25	-2.12	0.77	0.927302
8483	dm3.chr3L	23,516,398 – 23,516,464	- - - - - - - -	11650	23,516,398 – 23,516,464	+	5	67	72.89	-0.90	0.67	0.683281
8484	dm3.chr3L	23,557,000 – 23,557,192	- - - intron="intron;ID=intron_FBgn0250816:4_FBgn0250816:5;Name=AGO3-in;Parent=FBtr0299880;parent_type=mRNA" - - - -	11651	23,557,000 – 23,557,111	+	6	117	65.59	-2.61	0.52	0.999334
				11652	23,557,000 – 23,557,111	-	6	117	65.59	-2.74	0.45	0.998865
				11653	23,557,081 – 23,557,192	+	5	114	63.21	-1.49	0.35	0.645509
8485	dm3.chr3L	23,565,072 – 23,565,179	- - - intron="intron;ID=intron_FBgn0250816:6_FBgn0250816:7;Name=AGO3-in;Parent=FBtr0299880,FBtr0299881,FBtr0299882,FBtr0301725;parent_type=mRNA" - - - -	11654	23,565,072 – 23,565,179	+	3	118	68.64	-5.47	0.68	0.999863
8485	dm3.chr3L	23,565,072 – 23,565,179		11655	23,565,072 – 23,565,179	-	3	118	68.64	-4.83	0.50	0.999875
8486	dm3.chr3L	23,590,095 – 23,590,240	- - - intron="intron;ID=intron_FBgn0250816:7_FBgn0250816:8;Name=AGO3-in;Parent=FBtr0299880,FBtr0299881,FBtr0299882,FBtr0301725;parent_type=mRNA" - - - -	11656	23,590,095 – 23,590,240	+	3	149	50.00	-1.90	0.54	0.998240
8486	dm3.chr3L	23,590,095 – 23,590,240		11657	23,590,095 – 23,590,240	-	3	149	50.00	-1.39	0.46	0.965863
8487	dm3.chr3L	23,644,917 – 23,645,013	- - - intron="intron;ID=intron_FBgn0250816:10_FBgn0250816:12;Name=AGO3-in;Parent=FBtr0299880,FBtr0299881,FBtr0299882;parent_type=mRNA" - - - -	11658	23,644,917 – 23,645,013	-	6	96	70.34	-0.73	0.55	0.529296
8488	dm3.chr3L	23,646,508 – 23,646,561	- - - intron="intron;ID=intron_FBgn0250816:10_FBgn0250816:12;Name=AGO3-in;Parent=FBtr0299880,FBtr0299881,FBtr0299882;parent_type=mRNA" - - - -	11659	23,646,508 – 23,646,561	+	3	65	63.35	-1.08	0.74	0.911583
8488	dm3.chr3L	23,646,508 – 23,646,561		11660	23,646,508 – 23,646,561	-	3	65	63.35	-1.72	0.74	0.987467
8489	dm3.chr3L	23,655,603 – 23,655,695	- - - intron="intron;ID=intron_FBgn0250816:10_FBgn0250816:12;Name=AGO3-in;Parent=FBtr0299880,FBtr0299881,FBtr0299882;parent_type=mRNA" - - - -	11661	23,655,603 – 23,655,695	+	3	97	66.67	-1.49	0.73	0.949444
8490	dm3.chr3L	23,681,192 – 23,681,245	- - - intron="intron;ID=intron_FBgn0250816:10_FBgn0250816:12;Name=AGO3-in;Parent=FBtr0299880,FBtr0299881,FBtr0299882;parent_type=mRNA" - - - -	11662	23,681,192 – 23,681,245	+	3	55	92.73	-1.85	1.00	0.975793
8490	dm3.chr3L	23,681,192 – 23,681,245		11663	23,681,192 – 23,681,245	-	3	55	92.73	-1.28	1.00	0.895685
8491	dm3.chr3L	23,689,431 – 23,689,492	- - - - - - - -	11664	23,689,431 – 23,689,492	+	5	63	57.49	-1.58	0.63	0.998822
8492	dm3.chr3L	23,742,185 – 23,742,247	- - - - - - - -	11665	23,742,185 – 23,742,247	+	3	72	82.41	-2.47	0.66	0.887176
8493	dm3.chr3L	23,750,032 – 23,750,200	- - - - - - - -	11666	23,750,032 – 23,750,200	+	3	168	50.20	-1.93	0.32	0.935031
8494	dm3.chr3L	23,784,108 – 23,784,204	- - - - - - - -	11667	23,784,108 – 23,784,204	-	3	96	57.29	-3.83	0.19	0.988516
8495	dm3.chr3L	23,790,162 – 23,790,271	- - - - - - - -	11668	23,790,162 – 23,790,271	+	4	112	71.54	-2.33	0.46	0.872572
8496	dm3.chr3L	23,796,435 – 23,796,509	- - - - - - - -	11669	23,796,435 – 23,796,509	-	3	74	52.94	-0.68	0.49	0.644769
8497	dm3.chr3L	23,863,129 – 23,863,215	- - - intron="intron;ID=intron_CG40470:911448-911134_CG40470:877704-877383;Name=CG40470-in;Parent=FBtr0111152;parent_type=mRNA" - - - -	11670	23,863,129 – 23,863,215	+	5	96	58.13	-1.49	0.36	0.881777
8497	dm3.chr3L	23,863,129 – 23,863,215		11671	23,863,129 – 23,863,215	-	5	96	58.13	-1.24	0.33	0.566370
8498	dm3.chr3L	23,949,693 – 23,949,805	- - - intron="intron;ID=intron_CG40470:1012184-1012122_CG40470:972645-972404;Name=CG40470-in;Parent=FBtr0111152;parent_type=mRNA" - - - -	11672	23,949,693 – 23,949,805	+	4	113	53.36	-1.86	0.32	0.937776
8499	dm3.chr3L	23,974,571 – 23,974,642	- - - intron="intron;ID=intron_CG40470:1023914-1023788_CG40470:1012184-1012122;Name=CG40470-in;Parent=FBtr0111152;parent_type=mRNA" - - - -	11673	23,974,571 – 23,974,642	+	5	72	54.34	-0.79	0.35	0.554566
8500	dm3.chr3L	23,994,346 – 23,994,521	- - - - - - - -	11674	23,994,346 – 23,994,521	+	3	178	51.32	-2.87	0.25	0.982631
8501	dm3.chr3L	23,995,408 – 23,995,516	- - - - - - - -	11675	23,995,408 – 23,995,516	+	3	109	63.30	-1.48	0.53	0.833260
8502	dm3.chr3L	24,028,695 – 24,028,807	- - CDS="CDS;ID=CDS_FBgn0058045:4_455;Name=CG40045-cds;Parent=FBtr0304740;parent_type=mRNA" - - - - -	11676	24,028,695 – 24,028,807	-	14	120	81.44	-1.96	0.58	0.899914
8503	dm3.chr3L	24,051,794 – 24,051,859	- - - - - - - -	11677	24,051,794 – 24,051,859	+	3	65	55.50	-2.09	0.33	0.890914
8503	dm3.chr3L	24,051,794 – 24,051,859	- - - - - - - -	11678	24,051,794 – 24,051,859	-	3	65	55.50	-2.96	0.51	0.999652
8504	dm3.chr3L	24,090,780 – 24,090,858	- - - intron="intron;ID=intron_FBgn0011288:2_FBgn0011288:3;Name=Snap25-in;Parent=FBtr0111143,FBtr0304625,FBtr0304626;parent_type=mRNA" - - - -	11679	24,090,780 – 24,090,858	+	7	85	65.72	-1.85	0.37	0.944593
8504	dm3.chr3L	24,090,780 – 24,090,858		11680	24,090,780 – 24,090,858	-	7	85	65.72	-2.02	0.35	0.953954
8505	dm3.chr3L	24,098,767 – 24,098,831	- - - intron="intron;ID=intron_FBgn0011288:2_FBgn0011288:3;Name=Snap25-in;Parent=FBtr0111143,FBtr0304625,FBtr0304626;parent_type=mRNA" - - - -	11681	24,098,767 – 24,098,831	+	12	78	51.31	-1.15	0.29	0.773151
8505	dm3.chr3L	24,098,767 – 24,098,831		11682	24,098,767 – 24,098,831	-	12	78	51.31	-2.02	0.26	0.983623
8506	dm3.chr3L	24,099,761 – 24,099,911	- - - intron="intron;ID=intron_FBgn0011288:2_FBgn0011288:3;Name=Snap25-in;Parent=FBtr0111143,FBtr0304625,FBtr0304626;parent_type=mRNA" - - - -	11683	24,099,761 – 24,099,911	+	5	153	88.66	-2.92	0.75	0.981455
8506	dm3.chr3L	24,099,761 – 24,099,911		11684	24,099,761 – 24,099,911	-	5	153	88.66	-3.59	0.80	0.997358
8507	dm3.chr3L	24,140,357 – 24,140,450	- - - intron="intron;ID=intron_FBgn0011288:3_FBgn0011288:4;Name=Snap25-in;Parent=FBtr0111143,FBtr0304626;parent_type=mRNA" - - - -	11685	24,140,357 – 24,140,450	-	4	97	55.85	-0.48	0.48	0.578594
8508	dm3.chr3L	24,156,961 – 24,157,132	- - - intron="intron;ID=intron_FBgn0011288:4_FBgn0011288:6;Name=Snap25-in;Parent=FBtr0111143,FBtr0304626;parent_type=mRNA" - - - -	11686	24,156,961 – 24,157,070	-	4	118	59.23	-1.39	0.33	0.522194
				11687	24,157,030 – 24,157,132	+	4	117	61.76	-2.44	0.48	0.998112
				11688	24,157,030 – 24,157,132	-	4	117	61.76	-2.89	0.37	0.997020
8509	dm3.chr3L	24,169,892 – 24,169,955	- - - intron="intron;ID=intron_FBgn0011288:5_FBgn0011288:6;Name=Snap25-in;Parent=FBtr0304625;parent_type=mRNA" - - - -	11689	24,169,892 – 24,169,955	-	5	64	62.15	-0.95	0.41	0.554578
8510	dm3.chr3L	24,255,241 – 24,255,402	- - - intron="intron;ID=intron_FBgn0011288:8_FBgn0011288:9;Name=Snap25-in;Parent=FBtr0111143,FBtr0304625;parent_type=mRNA" - - - -	11690	24,255,241 – 24,255,402	-	3	167	49.49	-2.69	0.13	0.615763
8511	dm3.chr3L	24,265,202 – 24,265,262	- - - intron="intron;ID=intron_FBgn0011288:8_FBgn0011288:9;Name=Snap25-in;Parent=FBtr0111143,FBtr0304625;parent_type=mRNA" - - - -	11691	24,265,202 – 24,265,262	-	3	65	54.17	-2.53	0.24	0.863196
8512	dm3.chr3L	24,265,684 – 24,265,759	- - - intron="intron;ID=intron_FBgn0011288:8_FBgn0011288:9;Name=Snap25-in;Parent=FBtr0111143,FBtr0304625;parent_type=mRNA" - - - -	11692	24,265,684 – 24,265,759	+	3	76	55.80	-0.84	0.51	0.697821
8513	dm3.chr3L	24,272,292 – 24,272,356	- - - intron="intron;ID=intron_FBgn0011288:8_FBgn0011288:9;Name=Snap25-in;Parent=FBtr0111143,FBtr0304625;parent_type=mRNA" - - - -	11693	24,272,292 – 24,272,356	+	6	68	57.55	-0.72	0.52	0.940551
8513	dm3.chr3L	24,272,292 – 24,272,356		11694	24,272,292 – 24,272,356	-	6	68	57.55	-1.76	0.55	0.998935
8514	dm3.chr3L	24,276,560 – 24,276,664	- - - intron="intron;ID=intron_FBgn0011288:8_FBgn0011288:9;Name=Snap25-in;Parent=FBtr0111143,FBtr0304625;parent_type=mRNA" - - - -	11695	24,276,560 – 24,276,662	+	4	117	61.95	-3.71	0.49	0.999853
				11696	24,276,560 – 24,276,662	-	4	117	61.95	-1.67	0.55	0.980464
				11697	24,276,560 – 24,276,664	+	4	117	61.99	-3.73	0.49	0.999868
				11698	24,276,560 – 24,276,664	-	4	117	61.99	-1.50	0.57	0.975216
8515	dm3.chr3L	24,298,129 – 24,298,180	- - - - - - - -	11699	24,298,129 – 24,298,180	-	4	56	41.10	-0.77	0.31	0.500000
8516	dm3.chr3L	24,312,787 – 24,312,856	- - - - - - - -	11700	24,312,787 – 24,312,856	+	3	73	52.51	-2.41	0.20	0.687514
8517	dm3.chr3L	24,321,030 – 24,321,095	- - - intron="intron;ID=intron_FBgn0259697:1_FBgn0259697:2;Name=nvd-in;Parent=FBtr0113473;parent_type=mRNA" - - - -	11701	24,321,030 – 24,321,095	-	3	68	50.75	-0.70	0.46	0.670332
8518	dm3.chr3L	24,340,396 – 24,340,479	- - - intron="intron;ID=intron_FBgn0259697:1_FBgn0259697:2;Name=nvd-in;Parent=FBtr0113473;parent_type=mRNA" - - - -	11702	24,340,396 – 24,340,479	-	3	83	67.87	-1.02	0.62	0.582888
8519	dm3.chr3L	24,345,918 – 24,345,970	- - - intron="intron;ID=intron_FBgn0259697:2_FBgn0259697:3;Name=nvd-in;Parent=FBtr0113473;parent_type=mRNA" - - - -	11703	24,345,918 – 24,345,970	+	3	52	58.33	-3.21	0.35	0.996108
8519	dm3.chr3L	24,345,918 – 24,345,970		11704	24,345,918 – 24,345,970	-	3	52	58.33	-2.55	0.30	0.908505
8520	dm3.chr3L	24,364,141 – 24,364,243	- - - intron="intron;ID=intron_FBgn0259697:3_FBgn0259697:4;Name=nvd-in;Parent=FBtr0113473;parent_type=mRNA" - - - -	11705	24,364,141 – 24,364,243	+	5	106	57.48	-2.82	0.16	0.939340
8521	dm3.chr3L	24,393,841 – 24,393,892	- - - intron="intron;ID=intron_FBgn0259697:3_FBgn0259697:4;Name=nvd-in;Parent=FBtr0113473;parent_type=mRNA" - - - -	11706	24,393,841 – 24,393,892	+	3	52	65.58	-1.92	0.99	0.991924
8521	dm3.chr3L	24,393,841 – 24,393,892		11707	24,393,841 – 24,393,892	-	3	52	65.58	-2.82	0.92	0.998327
8522	dm3.chr3L	24,417,925 – 24,418,015	- - - - - - - -	11708	24,417,925 – 24,418,015	-	4	90	49.34	-1.39	0.28	0.665430
8523	dm3.chr3L	24,428,815 – 24,428,878	- - - - - - - -	11709	24,428,815 – 24,428,878	+	3	64	70.16	-1.24	0.71	0.796463
8523	dm3.chr3L	24,428,815 – 24,428,878	- - - - - - - -	11710	24,428,815 – 24,428,878	-	3	64	70.16	-1.98	0.51	0.814916
8524	dm3.chr3L	24,436,923 – 24,437,013	- - - - - - - -	11711	24,436,923 – 24,437,013	+	3	119	58.05	-2.54	0.57	0.998098
8524	dm3.chr3L	24,436,923 – 24,437,013	- - - - - - - -	11712	24,436,923 – 24,437,013	-	3	119	58.05	-1.83	0.47	0.928693
8525	dm3.chr3L	24,458,056 – 24,458,200	- - - - - - - -	11713	24,458,056 – 24,458,167	+	3	111	69.75	-2.41	0.42	0.769713
8525	dm3.chr3L	24,458,056 – 24,458,200	- - - - - - - -	11714	24,458,096 – 24,458,200	+	4	111	52.58	-2.38	0.29	0.981264
8526	dm3.chr3L	24,468,716 – 24,468,830	- - - - - - - -	11715	24,468,716 – 24,468,830	-	3	114	61.11	-1.44	0.42	0.598391
8527	dm3.chr3L	24,479,092 – 24,479,158	- - - - - - - -	11716	24,479,092 – 24,479,158	+	4	68	52.69	-2.32	0.31	0.978240
8528	dm3.chr3L	24,496,289 – 24,496,459	- - - - - - - -	11717	24,496,289 – 24,496,459	+	4	170	52.10	-2.40	0.20	0.908502
8528	dm3.chr3L	24,496,289 – 24,496,459	- - - - - - - -	11718	24,496,289 – 24,496,459	-	4	170	52.10	-2.41	0.18	0.859372
8529	dm3.chr3L	24,499,782 – 24,499,840	- - - - - - - -	11719	24,499,782 – 24,499,840	+	3	58	62.07	-1.72	0.48	0.907451
8530	dm3.chr3L	24,512,628 – 24,512,686	- - - - - - - -	11720	24,512,628 – 24,512,686	+	5	60	55.27	-0.91	0.34	0.545970
8531	dm3.chr3RHet	16,400 – 16,501	- - - intron="intron;ID=intron_FBgn0058155:2_FBgn0058155:1;Name=CG40155-in;Parent=FBtr0302251;parent_type=mRNA" - - - -	11721	16,400 – 16,501	-	5	109	83.49	-2.05	0.68	0.826597
8532	dm3.chr3RHet	32,941 – 32,993	- - - intron="intron;ID=intron_FBgn0058155:2_FBgn0058155:1;Name=CG40155-in;Parent=FBtr0302251;parent_type=mRNA" - - - -	11722	32,941 – 32,993	+	3	52	66.03	-1.20	0.80	0.937580
8533	dm3.chr3RHet	70,912 – 70,992	- - - intron="intron;ID=intron_FBgn0058155:2_FBgn0058155:1;Name=CG40155-in;Parent=FBtr0302251;parent_type=mRNA" - - - -	11723	70,912 – 70,992	-	6	98	56.83	-1.41	0.30	0.589191
8534	dm3.chr3RHet	80,911 – 81,011	- - - intron="intron;ID=intron_FBgn0058155:2_FBgn0058155:1;Name=CG40155-in;Parent=FBtr0302251;parent_type=mRNA" - - - -	11724	80,911 – 81,011	+	6	120	72.80	-1.03	0.59	0.562071
8535	dm3.chr3RHet	81,289 – 81,364	- - - intron="intron;ID=intron_FBgn0058155:2_FBgn0058155:1;Name=CG40155-in;Parent=FBtr0302251;parent_type=mRNA" - - - -	11725	81,289 – 81,364	+	6	76	67.26	-0.92	0.43	0.506610
8536	dm3.chr3RHet	116,517 – 116,630	- - - - - - - -	11726	116,517 – 116,630	+	4	113	53.01	-2.49	0.61	0.999792
8536	dm3.chr3RHet	116,517 – 116,630	- - - - - - - -	11727	116,517 – 116,630	-	4	113	53.01	-1.56	0.43	0.967847
8537	dm3.chr3RHet	134,648 – 134,770	- - - - - - - -	11728	134,648 – 134,770	-	3	136	54.04	-1.52	0.41	0.857793
8538	dm3.chr3RHet	151,176 – 151,240	- - - - - - - -	11729	151,176 – 151,240	-	5	69	59.41	-2.45	0.15	0.533833
8539	dm3.chr3RHet	168,737 – 168,789	- - - - - - - -	11730	168,737 – 168,789	+	5	57	71.91	-2.18	0.38	0.730101
8540	dm3.chr3RHet	183,161 – 183,310	- - - - - - - -	11731	183,161 – 183,270	+	3	118	55.08	-2.80	0.25	0.957106
				11732	183,161 – 183,270	-	3	118	55.08	-2.31	0.28	0.889791
				11733	183,190 – 183,310	+	3	120	63.89	-2.32	0.30	0.631283
				11734	183,190 – 183,310	-	3	120	63.89	-2.61	0.42	0.983240
8541	dm3.chr3RHet	184,127 – 184,222	- - - - - - - -	11735	184,127 – 184,222	-	4	100	65.28	-1.49	0.42	0.593851
8542	dm3.chr3RHet	184,261 – 184,368	- - - - - - - -	11736	184,261 – 184,368	+	4	109	67.90	-1.95	0.55	0.976692
8542	dm3.chr3RHet	184,261 – 184,368	- - - - - - - -	11737	184,261 – 184,368	-	4	109	67.90	-1.57	0.51	0.855297
8543	dm3.chr3RHet	254,615 – 254,667	- - - intron="intron;ID=intron_FBgn0040034:2_FBgn0040034:1;Name=CG15831-in;Parent=FBtr0302250;parent_type=mRNA" - - - -	11738	254,615 – 254,667	+	3	57	65.06	-2.58	0.48	0.985324
8544	dm3.chr3RHet	310,618 – 310,668	- - - intron="intron;ID=intron_FBgn0040034:3_FBgn0040034:2;Name=CG15831-in;Parent=FBtr0302250;parent_type=mRNA" - - - -	11739	310,618 – 310,668	+	3	50	97.33	-1.02	1.00	0.708327
8545	dm3.chr3RHet	373,384 – 373,498	- - - intron="intron;ID=intron_FBgn0040034:3_FBgn0040034:2;Name=CG15831-in;Parent=FBtr0302250;parent_type=mRNA" - - - -	11740	373,384 – 373,498	+	6	120	75.59	-2.92	0.60	0.998001
8546	dm3.chr3RHet	410,887 – 410,973	- - - intron="intron;ID=intron_FBgn0040034:3_FBgn0040034:2;Name=CG15831-in;Parent=FBtr0302250;parent_type=mRNA" - - - -	11741	410,887 – 410,973	-	4	87	81.47	-1.91	0.81	0.943184
8547	dm3.chr3RHet	418,107 – 418,169	- - - intron="intron;ID=intron_FBgn0040034:3_FBgn0040034:2;Name=CG15831-in;Parent=FBtr0302250;parent_type=mRNA" - - - -	11742	418,107 – 418,169	+	4	62	70.70	-1.73	0.45	0.680227
8547	dm3.chr3RHet	418,107 – 418,169		11743	418,107 – 418,169	-	4	62	70.70	-1.75	0.54	0.912640
8548	dm3.chr3RHet	545,551 – 545,645	- - - - - - - -	11744	545,551 – 545,645	+	3	98	55.56	-0.79	0.57	0.816246
8549	dm3.chr3RHet	545,806 – 545,898	- - - - - - - -	11745	545,806 – 545,898	+	3	94	59.62	-1.69	0.41	0.652414
8550	dm3.chr3RHet	555,726 – 555,836	- - - - - - - -	11746	555,726 – 555,836	-	4	120	59.71	-1.28	0.42	0.763632
8551	dm3.chr3RHet	555,944 – 556,090	- - - - - - - -	11747	555,944 – 556,052	+	4	113	54.03	-2.70	0.25	0.984004
				11748	555,944 – 556,052	-	4	113	54.03	-3.10	0.33	0.999227
				11749	555,977 – 556,090	+	4	120	57.14	-2.27	0.35	0.986811
				11750	555,977 – 556,090	-	4	120	57.14	-1.31	0.39	0.831277
8552	dm3.chr3RHet	602,667 – 602,759	- - - intron="intron;ID=intron_FBgn0261336:2_FBgn0261336:1;Name=CG42621-in;Parent=FBtr0302249;parent_type=mRNA" - - - -	11751	602,667 – 602,759	+	4	103	68.01	-0.99	0.61	0.633118
8553	dm3.chr3RHet	610,049 – 610,143	- - - intron="intron;ID=intron_FBgn0261336:3_FBgn0261336:2;Name=CG42621-in;Parent=FBtr0302249;parent_type=mRNA" - - - -	11752	610,049 – 610,143	+	3	99	60.96	-1.61	0.57	0.952691
8553	dm3.chr3RHet	610,049 – 610,143		11753	610,049 – 610,143	-	3	99	60.96	-2.33	0.34	0.835185
8554	dm3.chr3RHet	612,224 – 612,319	- - - intron="intron;ID=intron_FBgn0261336:3_FBgn0261336:2;Name=CG42621-in;Parent=FBtr0302249;parent_type=mRNA" - - - -	11754	612,224 – 612,319	+	4	107	63.24	-1.44	0.40	0.602793
8555	dm3.chr3RHet	612,469 – 612,524	- - - intron="intron;ID=intron_FBgn0261336:3_FBgn0261336:2;Name=CG42621-in;Parent=FBtr0302249;parent_type=mRNA" - - - -	11755	612,469 – 612,524	-	4	56	73.05	-1.82	0.62	0.941158
8556	dm3.chr3RHet	634,591 – 634,688	- - - intron="intron;ID=intron_FBgn0261336:3_FBgn0261336:2;Name=CG42621-in;Parent=FBtr0302249;parent_type=mRNA" - - - -	11756	634,591 – 634,688	+	4	97	53.10	-2.01	0.34	0.985409
8557	dm3.chr3RHet	659,146 – 659,238	- - - intron="intron;ID=intron_FBgn0261336:4_FBgn0261336:3;Name=CG42621-in;Parent=FBtr0302249;parent_type=mRNA" - - - -	11757	659,146 – 659,238	+	4	111	75.98	-2.86	0.59	0.993553
8557	dm3.chr3RHet	659,146 – 659,238		11758	659,146 – 659,238	-	4	111	75.98	-1.47	0.58	0.500000
8558	dm3.chr3RHet	683,752 – 683,814	- - - - - - - -	11759	683,752 – 683,814	+	9	65	65.40	-1.34	0.57	0.989981
8559	dm3.chr3RHet	687,788 – 687,870	- - - - - - - -	11760	687,788 – 687,870	+	7	100	63.97	-0.22	0.58	0.637714
8560	dm3.chr3RHet	704,153 – 704,256	- - - - - - - -	11761	704,153 – 704,256	+	5	116	65.49	-1.70	0.47	0.961897
8560	dm3.chr3RHet	704,153 – 704,256	- - - - - - - -	11762	704,153 – 704,256	-	5	116	65.49	-1.69	0.55	0.988223
8561	dm3.chr3RHet	730,317 – 730,396	- - - - - - - -	11763	730,317 – 730,396	-	6	96	69.15	-2.18	0.65	0.997029
8562	dm3.chr3RHet	730,506 – 730,563	- - - - - - - -	11764	730,506 – 730,563	+	4	57	69.01	-0.85	0.68	0.752593
8562	dm3.chr3RHet	730,506 – 730,563	- - - - - - - -	11765	730,506 – 730,563	-	4	57	69.01	-0.80	0.70	0.756274
8563	dm3.chr3RHet	733,834 – 733,951	- - - - - - - -	11766	733,834 – 733,951	-	5	119	77.68	-1.84	0.49	0.509777
8564	dm3.chr3RHet	734,515 – 734,572	- - - - - - - -	11767	734,515 – 734,572	-	6	57	58.83	-1.76	0.25	0.814916
8565	dm3.chr3RHet	749,776 – 749,836	- - - - - - - -	11768	749,776 – 749,836	+	3	70	71.63	-1.30	0.68	0.694254
8566	dm3.chr3RHet	759,520 – 759,616	- - - - - - - -	11769	759,520 – 759,616	+	3	96	52.84	-0.31	0.65	0.810128
8566	dm3.chr3RHet	759,520 – 759,616	- - - - - - - -	11770	759,520 – 759,616	-	3	96	52.84	-0.88	0.54	0.898914
8567	dm3.chr3RHet	776,638 – 776,773	- - - - - - - -	11771	776,638 – 776,773	-	3	135	54.57	-1.62	0.35	0.727655
8568	dm3.chr3RHet	791,955 – 792,010	- - - - - - - -	11772	791,955 – 792,010	+	4	66	60.58	-0.42	0.63	0.721558
8569	dm3.chr3RHet	846,597 – 846,648	- - - - - - - -	11773	846,597 – 846,648	-	3	51	58.82	-2.16	0.60	0.997020
8570	dm3.chr3RHet	866,834 – 866,928	- - - - - - - -	11774	866,834 – 866,928	+	3	94	66.67	-2.72	0.76	0.998515
8571	dm3.chr3RHet	888,299 – 888,401	- - - - - - - -	11775	888,299 – 888,401	-	5	106	69.25	-0.56	0.66	0.633227
8572	dm3.chr3RHet	918,734 – 918,799	- - - - - - - -	11776	918,734 – 918,799	-	4	67	65.08	-1.74	0.78	0.995283
8573	dm3.chr3RHet	928,987 – 929,083	- - - - - - - -	11777	928,987 – 929,083	-	3	96	55.56	-1.70	0.32	0.616558
8574	dm3.chr3RHet	929,860 – 929,936	- - - - - - - -	11778	929,860 – 929,936	-	3	76	52.19	-0.64	0.46	0.587590
8575	dm3.chr3RHet	982,271 – 982,358	- - - - - - - -	11779	982,271 – 982,358	+	6	105	62.85	-1.60	0.54	0.992213
8576	dm3.chr3RHet	982,625 – 982,738	- - - - - - - -	11780	982,625 – 982,738	+	6	114	68.82	-0.73	0.60	0.800667
8577	dm3.chr3RHet	1,006,061 – 1,006,190	- - - - - - - -	11781	1,006,061 – 1,006,190	+	6	131	70.91	-2.28	0.40	0.961735
8578	dm3.chr3RHet	1,006,242 – 1,006,317	- - - - - - - -	11782	1,006,242 – 1,006,317	+	4	75	80.67	-1.26	0.76	0.570332
8579	dm3.chr3RHet	1,009,803 – 1,009,891	- - - - - - - -	11783	1,009,803 – 1,009,891	+	5	88	74.09	-1.81	0.60	0.953965
8579	dm3.chr3RHet	1,009,803 – 1,009,891	- - - - - - - -	11784	1,009,803 – 1,009,891	-	5	88	74.09	-1.24	0.61	0.749671
8580	dm3.chr3RHet	1,019,509 – 1,019,601	- - - - - - - -	11785	1,019,509 – 1,019,601	+	3	94	80.14	-1.38	0.78	0.570399
8581	dm3.chr3RHet	1,025,402 – 1,025,493	- - - - - - - -	11786	1,025,402 – 1,025,493	+	4	101	56.97	-1.14	0.39	0.638415
8582	dm3.chr3RHet	1,075,502 – 1,075,612	- - - - - - - -	11787	1,075,502 – 1,075,612	+	6	113	53.89	-0.86	0.33	0.500000
8583	dm3.chr3RHet	1,078,138 – 1,078,211	- - - - "Rfam_10.0=RF00177;SSU_rRNA_5;X97143.1/76-668\|2.4e-13" - - -	11788	1,078,138 – 1,078,211	-	5	73	63.86	-1.12	0.42	0.575054
8584	dm3.chr3RHet	1,091,782 – 1,091,848	- - - - - - - -	11789	1,091,782 – 1,091,848	-	3	66	94.95	-1.41	1.00	0.908497
8585	dm3.chr3RHet	1,158,984 – 1,159,073	- - - intron="intron;ID=intron_FBgn0085781:4_FBgn0085781:3;Name=CG41056-in;Parent=FBtr0302220;parent_type=mRNA" - - - -	11790	1,158,984 – 1,159,073	-	5	96	70.15	-2.07	0.38	0.761330
8586	dm3.chr3RHet	1,162,807 – 1,162,908	- - - intron="intron;ID=intron_FBgn0085781:4_FBgn0085781:3;Name=CG41056-in;Parent=FBtr0302220;parent_type=mRNA" - - - -	11791	1,162,807 – 1,162,908	+	5	117	54.16	-1.90	0.29	0.907184
8586	dm3.chr3RHet	1,162,807 – 1,162,908		11792	1,162,807 – 1,162,908	-	5	117	54.16	-2.37	0.25	0.953950
8587	dm3.chr3RHet	1,168,439 – 1,168,503	- - - intron="intron;ID=intron_FBgn0085781:4_FBgn0085781:3;Name=CG41056-in;Parent=FBtr0302220;parent_type=mRNA" - - - -	11793	1,168,439 – 1,168,503	+	3	69	62.32	-2.07	0.60	0.990985
8588	dm3.chr3RHet	1,205,139 – 1,205,203	- - - intron="intron;ID=intron_FBgn0085781:4_FBgn0085781:3;Name=CG41056-in;Parent=FBtr0302220;parent_type=mRNA" - - - -	11794	1,205,139 – 1,205,203	-	5	65	71.21	-2.66	0.66	0.998935
8589	dm3.chr3RHet	1,205,898 – 1,206,007	- - - intron="intron;ID=intron_FBgn0085781:4_FBgn0085781:3;Name=CG41056-in;Parent=FBtr0302220;parent_type=mRNA" - - - -	11795	1,205,898 – 1,206,007	-	3	118	71.75	-1.86	0.61	0.856336
8590	dm3.chr3RHet	1,297,330 – 1,297,472	- - - intron="intron;ID=intron_FBgn0085781:6_FBgn0085781:5;Name=CG41056-in;Parent=FBtr0302220;parent_type=mRNA" - - - -	11796	1,297,330 – 1,297,472	+	3	142	51.32	-2.88	0.19	0.921867
8591	dm3.chr3RHet	1,314,911 – 1,314,961	- - - - - - - -	11797	1,314,911 – 1,314,961	-	3	51	59.87	-2.08	0.31	0.644110
8592	dm3.chr3RHet	1,352,115 – 1,352,321	- - - - - - - -	11798	1,352,115 – 1,352,270	+	5	174	84.27	-3.39	0.73	0.997354
				11799	1,352,115 – 1,352,270	-	5	174	84.27	-2.59	0.71	0.975308
				11800	1,352,270 – 1,352,321	+	5	51	92.94	-1.95	0.79	0.595078
8593	dm3.chr3RHet	1,362,920 – 1,362,992	- - - - - - - -	11801	1,362,920 – 1,362,992	+	5	75	58.93	-3.29	0.05	0.711024
8594	dm3.chr3RHet	1,412,292 – 1,412,479	- - - - - - - -	11802	1,412,292 – 1,412,479	+	5	187	87.10	-2.63	0.80	0.983702
8594	dm3.chr3RHet	1,412,292 – 1,412,479	- - - - - - - -	11803	1,412,292 – 1,412,479	-	5	187	87.10	-3.81	0.67	0.997337
8595	dm3.chr3RHet	1,428,442 – 1,428,556	- - - - - - - -	11804	1,428,442 – 1,428,556	+	5	120	72.08	-1.48	0.57	0.884374
8596	dm3.chr3RHet	1,429,610 – 1,429,670	- - - - - - - -	11805	1,429,610 – 1,429,670	+	4	60	64.04	-2.04	0.70	0.998339
8596	dm3.chr3RHet	1,429,610 – 1,429,670	- - - - - - - -	11806	1,429,610 – 1,429,670	-	4	60	64.04	-2.89	0.85	0.999408
8597	dm3.chr3RHet	1,431,702 – 1,431,802	- - - - - - - -	11807	1,431,702 – 1,431,802	+	5	117	48.65	-0.80	0.34	0.522226
8598	dm3.chr3RHet	1,525,628 – 1,525,764	- - - intron="intron;ID=intron_FBgn0261281:2_FBgn0261281:1;Name=CG42618-in;Parent=FBtr0302219;parent_type=mRNA" - - - -	11808	1,525,628 – 1,525,764	+	3	136	53.75	-2.05	0.57	0.998375
8599	dm3.chr3RHet	1,527,585 – 1,527,672	- - - intron="intron;ID=intron_FBgn0261281:2_FBgn0261281:1;Name=CG42618-in;Parent=FBtr0302219;parent_type=mRNA" - - - -	11809	1,527,585 – 1,527,672	-	3	90	60.82	-0.93	0.53	0.507188
8600	dm3.chr3RHet	1,558,844 – 1,558,935	- - - intron="intron;ID=intron_FBgn0261281:2_FBgn0261281:1;Name=CG42618-in;Parent=FBtr0302219;parent_type=mRNA" - - - -	11810	1,558,844 – 1,558,935	-	7	97	74.15	-1.46	0.55	0.877451
8601	dm3.chr3RHet	1,592,870 – 1,592,944	- - - intron="intron;ID=intron_FBgn0261281:2_FBgn0261281:1;Name=CG42618-in;Parent=FBtr0302219;parent_type=mRNA" - - - -	11811	1,592,870 – 1,592,944	-	4	82	55.01	-0.82	0.51	0.882799
8602	dm3.chr3RHet	1,596,577 – 1,596,680	- - - intron="intron;ID=intron_FBgn0261281:2_FBgn0261281:1;Name=CG42618-in;Parent=FBtr0302219;parent_type=mRNA" - - - -	11812	1,596,577 – 1,596,680	-	3	113	52.42	-1.51	0.38	0.783602
8603	dm3.chr3RHet	1,623,796 – 1,623,957	- - - - - - - -	11813	1,623,796 – 1,623,957	+	10	181	64.24	-0.70	0.48	0.830423
8604	dm3.chr3RHet	1,640,232 – 1,640,367	- - - - - - - -	11814	1,640,232 – 1,640,367	-	4	136	74.72	-2.10	0.77	0.988070
8605	dm3.chr3RHet	1,643,992 – 1,644,087	- - - - - - - -	11815	1,643,992 – 1,644,087	+	3	96	50.87	-1.30	0.43	0.921623
8605	dm3.chr3RHet	1,643,992 – 1,644,087	- - - - - - - -	11816	1,643,992 – 1,644,087	-	3	96	50.87	-2.55	0.38	0.997345
8606	dm3.chr3RHet	1,673,838 – 1,673,977	- - - - - - - -	11817	1,673,838 – 1,673,937	-	6	116	63.66	-1.70	0.35	0.906734
				11818	1,673,878 – 1,673,977	+	4	118	63.11	-1.58	0.37	0.606702
				11819	1,673,878 – 1,673,977	-	4	118	63.11	-3.15	0.52	0.999677
8607	dm3.chr3RHet	1,674,023 – 1,674,139	- - - - - - - -	11820	1,674,023 – 1,674,139	-	6	119	66.99	-1.49	0.35	0.505533
8608	dm3.chr3RHet	1,746,143 – 1,746,200	- - - - - - - -	11821	1,746,143 – 1,746,200	+	5	58	59.82	-0.87	0.47	0.844288
8609	dm3.chr3RHet	1,788,382 – 1,788,483	- - - - - - - -	11822	1,788,382 – 1,788,483	+	3	106	52.27	-2.29	0.25	0.829812
8610	dm3.chr3RHet	1,794,075 – 1,794,130	- - - - - - - -	11823	1,794,075 – 1,794,130	+	7	57	70.97	-1.49	0.58	0.976955
8611	dm3.chr3RHet	1,825,970 – 1,826,155	- - - - - - - -	11824	1,825,970 – 1,826,155	+	4	193	54.76	-1.90	0.29	0.899622
8611	dm3.chr3RHet	1,825,970 – 1,826,155	- - - - - - - -	11825	1,825,970 – 1,826,155	-	4	193	54.76	-1.62	0.27	0.633514
8612	dm3.chr3RHet	1,833,484 – 1,833,621	- - - - - - - -	11826	1,833,484 – 1,833,621	+	4	144	68.99	-2.41	0.47	0.979060
8612	dm3.chr3RHet	1,833,484 – 1,833,621	- - - - - - - -	11827	1,833,484 – 1,833,621	-	4	144	68.99	-1.84	0.56	0.958967
8613	dm3.chr3RHet	1,836,210 – 1,836,300	- - - - - - - -	11828	1,836,210 – 1,836,300	+	5	90	56.68	-0.55	0.39	0.500000
8614	dm3.chr3RHet	1,843,440 – 1,843,495	- - - - - - - -	11829	1,843,440 – 1,843,495	-	3	64	51.91	-0.52	0.53	0.598640
8615	dm3.chr3RHet	1,940,070 – 1,940,178	- - - intron="intron;ID=intron_FBgn0010247:3_FBgn0010247:4;Name=Parp-in;Parent=FBtr0113885;parent_type=mRNA" - - - -	11830	1,940,070 – 1,940,178	+	3	110	59.26	-1.55	0.40	0.646992
8616	dm3.chr3RHet	1,944,534 – 1,944,591	- - - intron="intron;ID=intron_FBgn0010247:3_FBgn0010247:4;Name=Parp-in;Parent=FBtr0113885;parent_type=mRNA" - - - -	11831	1,944,534 – 1,944,591	+	3	59	81.92	-1.31	0.86	0.712209
8616	dm3.chr3RHet	1,944,534 – 1,944,591		11832	1,944,534 – 1,944,591	-	3	59	81.92	-1.33	0.82	0.588877
8617	dm3.chr3RHet	1,946,971 – 1,947,025	- - - intron="intron;ID=intron_FBgn0010247:3_FBgn0010247:4;Name=Parp-in;Parent=FBtr0113885;parent_type=mRNA" - - - -	11833	1,946,971 – 1,947,025	+	3	56	61.31	-2.75	0.26	0.841574
8618	dm3.chr3RHet	1,958,658 – 1,958,737	- - - intron="intron;ID=intron_FBgn0010247:3_FBgn0010247:4;Name=Parp-in;Parent=FBtr0113885;parent_type=mRNA" - - - -	11834	1,958,658 – 1,958,737	+	3	81	59.75	-2.67	0.55	0.998996
8619	dm3.chr3RHet	1,969,413 – 1,969,489	- - - intron="intron;ID=intron_FBgn0010247:4_FBgn0010247:5;Name=Parp-in;Parent=FBtr0113885;parent_type=mRNA" - - - -	11835	1,969,413 – 1,969,489	-	4	76	55.70	-1.70	0.27	0.690206
8620	dm3.chr3RHet	2,024,229 – 2,024,357	- - - intron="intron;ID=intron_FBgn0010247:5_FBgn0010247:6;Name=Parp-in;Parent=FBtr0113885;parent_type=mRNA" - - - -	11836	2,024,229 – 2,024,325	+	5	111	64.00	-1.10	0.60	0.965395
8620	dm3.chr3RHet	2,024,229 – 2,024,357		11837	2,024,257 – 2,024,357	+	6	115	68.75	-0.94	0.55	0.782428
8621	dm3.chr3RHet	2,102,062 – 2,102,127	- - - - - - - -	11838	2,102,062 – 2,102,127	+	5	66	68.28	-1.62	0.96	0.989461
8622	dm3.chr3RHet	2,103,387 – 2,103,475	- - - - - - - -	11839	2,103,387 – 2,103,475	-	5	95	51.52	-0.36	0.41	0.561752
8623	dm3.chr3RHet	2,105,677 – 2,105,728	- - - - - - - -	11840	2,105,677 – 2,105,728	-	4	58	73.70	-2.00	0.72	0.975159
8624	dm3.chr3RHet	2,125,904 – 2,126,012	- - - - - - - -	11841	2,125,904 – 2,126,012	+	4	108	72.69	-1.02	0.64	0.591094
8625	dm3.chr3RHet	2,160,147 – 2,160,251	- - - - - - - -	11842	2,160,147 – 2,160,251	+	4	108	66.56	-1.05	0.51	0.578604
8626	dm3.chr3RHet	2,162,613 – 2,162,714	- - - - - - - -	11843	2,162,613 – 2,162,714	+	4	106	69.84	-1.74	0.64	0.965195
8626	dm3.chr3RHet	2,162,613 – 2,162,714	- - - - - - - -	11844	2,162,613 – 2,162,714	-	4	106	69.84	-1.76	0.58	0.938750
8627	dm3.chr3RHet	2,210,649 – 2,210,742	- - - intron="intron;ID=intron_FBgn0261280:6_FBgn0261280:7;Name=CG42617-in;Parent=FBtr0302215;parent_type=mRNA" - - - -	11845	2,210,649 – 2,210,742	+	6	97	70.07	-1.40	0.53	0.911975
8628	dm3.chr3RHet	2,273,935 – 2,274,053	- - - intron="intron;ID=intron_FBgn0261280:6_FBgn0261280:7;Name=CG42617-in;Parent=FBtr0302215;parent_type=mRNA" - - - -	11846	2,273,935 – 2,274,053	-	7	130	61.27	-1.34	0.31	0.617731
8629	dm3.chr3RHet	2,274,222 – 2,274,318	- - - intron="intron;ID=intron_FBgn0261280:6_FBgn0261280:7;Name=CG42617-in;Parent=FBtr0302215;parent_type=mRNA" - - - -	11847	2,274,222 – 2,274,318	-	5	116	64.43	-1.12	0.45	0.638731
8630	dm3.chr3RHet	2,279,230 – 2,279,336	- - - intron="intron;ID=intron_FBgn0261280:6_FBgn0261280:7;Name=CG42617-in;Parent=FBtr0302215;parent_type=mRNA" - - - -	11848	2,279,230 – 2,279,336	+	4	106	78.77	-1.61	0.69	0.739141
8631	dm3.chr3RHet	2,292,857 – 2,292,985	- - - intron="intron;ID=intron_FBgn0261280:6_FBgn0261280:7;Name=CG42617-in;Parent=FBtr0302215;parent_type=mRNA" - - - -	11849	2,292,857 – 2,292,985	-	4	134	60.08	-2.61	0.35	0.989428
8632	dm3.chr3RHet	2,297,207 – 2,297,285	- - - intron="intron;ID=intron_FBgn0261280:6_FBgn0261280:7;Name=CG42617-in;Parent=FBtr0302215;parent_type=mRNA" - - - -	11850	2,297,207 – 2,297,285	+	4	78	70.37	-2.37	0.80	0.997540
8632	dm3.chr3RHet	2,297,207 – 2,297,285		11851	2,297,207 – 2,297,285	-	4	78	70.37	-3.23	0.92	0.998868
8633	dm3.chr3RHet	2,457,320 – 2,457,381	- - - - - - - -	11852	2,457,320 – 2,457,381	-	3	61	68.89	-0.89	0.81	0.742244
8634	dm3.chr3RHet	2,471,369 – 2,471,419	- - - intron="intron;ID=intron_FBgn0027341:1_FBgn0027341:4;Name=Gfat1-in;Parent=FBtr0302850,FBtr0113694;parent_type=mRNA" - - - -	11853	2,471,369 – 2,471,419	-	5	50	72.60	-1.29	0.56	0.727725
8635	dm3.chr3R	46,630 – 46,745	- - - intron="intron;ID=intron_CG1107:4_CG1107:5;Name=aux-in;Parent=FBtr0078965;parent_type=mRNA" - - - -	11854	46,630 – 46,745	+	5	120	72.95	-2.08	0.67	0.984223
8635	dm3.chr3R	46,630 – 46,745		11855	46,630 – 46,745	-	5	120	72.95	-2.07	0.65	0.980530
8636	dm3.chr3R	83,161 – 83,271	- - CDS="CDS;ID=CDS_CG31519:83054-83252_5;Name=Or82a-cds;Parent=FBtr0078977;parent_type=mRNA" - - - - -	11856	83,161 – 83,271	+	12	120	66.24	-0.95	0.40	0.617858
8637	dm3.chr3R	121,092 – 121,163	FBnoncoding="pre_miRNA;ID=FBtr0304264;Name=mir-929-RM;Parent=FBgn0262214;Alias=CR42921-RM;Dbxref=FlyBase_Annotation_IDs:CR42921-RM,miRBase:MI0005853" - - intron="intron;ID=intron_FBgn0041605:24_FBgn0041605:25;Name=cpx-in;Parent=FBtr0078900,FBtr0113338,FBtr0113339,FBtr0113340,FBtr0113341,FBtr0301768,FBtr0301770,FBtr0301772;parent_type=mRNA" "Rfam_10.0=RF00947;mir-929;AABU01002551.1/121293-121386\|1.2e-33" - - "mirBase_v16=dme-mir-929\|2.3e-35"	11857	121,092 – 121,163	+	15	77	85.56	-5.17	0.89	0.999170
8637	dm3.chr3R	121,092 – 121,163		11858	121,092 – 121,163	-	15	77	85.56	-4.19	0.92	0.999191
8638	dm3.chr3R	137,230 – 137,322	- - - - - - - -	11859	137,230 – 137,322	-	8	116	57.00	-1.31	0.31	0.598042
8639	dm3.chr3R	143,749 – 143,867	- - CDS="CDS;ID=CDS_CG9778:144010-143678_87;Name=Syt14-cds;Parent=FBtr0078957;parent_type=mRNA" - - - - -	11860	143,749 – 143,867	-	12	120	74.32	-1.40	0.55	0.914415
8640	dm3.chr3R	146,729 – 146,790	- - - intron="intron;ID=intron_CG9795:145412-145612_CG9795:147567-147769;Name=CG9795-in;Parent=FBtr0078907,FBtr0078905;parent_type=mRNA" - - - -	11861	146,729 – 146,790	+	3	61	96.72	-1.02	0.98	0.609544
8640	dm3.chr3R	146,729 – 146,790		11862	146,729 – 146,790	-	3	61	96.72	-1.52	0.97	0.855377
8641	dm3.chr3R	186,740 – 186,833	- - - intron="intron;ID=intron_FBgn0037238:1_FBgn0037238:2;Name=CG1090-in;Parent=FBtr0078912;parent_type=mRNA" - - - -	11863	186,740 – 186,833	+	5	96	85.08	-2.73	0.77	0.986067
				11864	186,740 – 186,833	-	5	96	85.08	-2.24	0.77	0.941915
				11865	186,741 – 186,833	+	5	95	85.35	-2.79	0.77	0.987438
				11866	186,741 – 186,833	-	5	95	85.35	-2.31	0.77	0.950078
8642	dm3.chr3R	252,054 – 252,152	- - CDS="CDS;ID=CDS_FBgn0037248:5_163;Name=Spargel-cds;Parent=FBtr0301244;parent_type=mRNA" - - - - -	11867	252,054 – 252,152	-	9	115	63.99	-1.48	0.30	0.500000
8643	dm3.chr3R	258,474 – 258,618	- - CDS="CDS;ID=CDS_FBgn0037249:3_179;Name=eIF3-S10-cds;Parent=FBtr0078944;parent_type=mRNA" - - - - -	11868	258,474 – 258,594	+	15	120	80.51	-2.07	0.47	0.829066
				11869	258,498 – 258,618	+	15	120	82.52	-2.79	0.43	0.936037
				11870	258,498 – 258,618	-	15	120	82.52	-1.98	0.51	0.725210
8644	dm3.chr3R	259,414 – 259,492	- - CDS="CDS;ID=CDS_FBgn0037249:4_179;Name=eIF3-S10-cds;Parent=FBtr0078944;parent_type=mRNA" - - - - -	11871	259,414 – 259,492	+	15	83	71.41	-0.40	0.64	0.778867
8645	dm3.chr3R	286,931 – 286,985	- - - - - - - -	11872	286,931 – 286,985	+	5	56	60.88	-1.57	0.82	0.997676
8646	dm3.chr3R	296,961 – 297,060	- - - - - - - -	11873	296,961 – 297,060	+	8	111	76.82	-1.78	0.53	0.807361
8647	dm3.chr3R	298,224 – 298,315	- - - - - - - -	11874	298,224 – 298,315	+	8	106	66.36	-1.23	0.43	0.765655
8647	dm3.chr3R	298,224 – 298,315	- - - - - - - -	11875	298,224 – 298,315	-	8	106	66.36	-0.79	0.50	0.690295
8648	dm3.chr3R	306,414 – 306,481	- - - - - - - -	11876	306,414 – 306,481	+	4	70	70.32	-0.69	0.71	0.550229
8649	dm3.chr3R	310,935 – 311,031	- - CDS="CDS;ID=CDS_CG1078:310763-312253_87;Name=Fip1-cds;Parent=FBtr0078928;parent_type=mRNA" - - - - -	11877	310,935 – 311,031	+	8	105	56.92	-1.34	0.30	0.845130
8650	dm3.chr3R	336,893 – 336,966	- - - intron="intron;ID=intron_FBgn0085386:12_FBgn0085386:10;Name=CG34357-in;Parent=FBtr0112567,FBtr0303867;parent_type=mRNA" - - - -	11878	336,893 – 336,966	+	3	73	92.69	-0.63	1.05	0.776633
8651	dm3.chr3R	348,344 – 348,421	- - - intron="intron;ID=intron_FBgn0085386:12_FBgn0085386:11;Name=CG34357-in;Parent=FBtr0112568;parent_type=mRNA" - - - -	11879	348,344 – 348,421	-	4	96	53.18	-1.38	0.46	0.960303
8652	dm3.chr3R	364,063 – 364,163	- - CDS="CDS;ID=CDS_FBgn0085386:14_231;Name=CG34357-cds;Parent=FBtr0303867;parent_type=mRNA" - - - - -	11880	364,063 – 364,163	-	12	117	76.80	-1.26	0.54	0.580598
8653	dm3.chr3R	366,195 – 366,274	- - - intron="intron;ID=intron_FBgn0085386:15_FBgn0085386:14;Name=CG34357-in;Parent=FBtr0112567,FBtr0112568,FBtr0303867;parent_type=mRNA" - - - -	11881	366,195 – 366,274	+	3	81	60.17	-0.94	0.55	0.649030
8654	dm3.chr3R	395,635 – 395,714	- - - - - - - -	11882	395,635 – 395,714	+	3	81	66.80	-1.45	0.68	0.908581
8655	dm3.chr3R	404,288 – 404,340	- - - - - - - -	11883	404,288 – 404,340	+	4	65	56.41	-0.25	0.59	0.550912
8655	dm3.chr3R	404,288 – 404,340	- - - - - - - -	11884	404,288 – 404,340	-	4	65	56.41	-0.07	0.71	0.699736
8656	dm3.chr3R	437,531 – 437,627	- - - - - - - -	11885	437,531 – 437,627	-	3	117	78.26	-2.34	0.50	0.551716
8657	dm3.chr3R	452,455 – 452,506	- - - intron="intron;ID=intron_FBgn0087012:3_FBgn0087012:4;Name=5-HT2-in;Parent=FBtr0078854,FBtr0078855,FBtr0112871,FBtr0300474;parent_type=mRNA" - - - -	11886	452,455 – 452,506	+	3	52	89.68	-0.73	0.98	0.545790
8658	dm3.chr3R	482,142 – 482,254	- - CDS="CDS;ID=CDS_CG12001:2_72;Name=CG12001-cds;Parent=FBtr0078861;parent_type=mRNA" - - - - -	11887	482,142 – 482,254	+	13	113	69.80	-3.62	0.17	0.989304
8658	dm3.chr3R	482,142 – 482,254		11888	482,142 – 482,254	-	13	113	69.80	-4.47	0.27	0.999818
8659	dm3.chr3R	487,167 – 487,298	- - - intron="intron;ID=intron_CG31531:2_CG31531:3;Name=CG31531-in;Parent=FBtr0078862,FBtr0078864;parent_type=mRNA" - - - -	11889	487,167 – 487,298	-	3	139	76.98	-1.48	0.71	0.555825
8660	dm3.chr3R	490,208 – 490,310	- - - intron="intron;ID=intron_CG31531:2_CG31531:3;Name=CG31531-in;Parent=FBtr0078862,FBtr0078864;parent_type=mRNA" - - - -	11890	490,208 – 490,310	+	6	105	54.29	-0.75	0.40	0.763405
8661	dm3.chr3R	510,767 – 510,896	- - - intron="intron;ID=intron_CG31531:4_CG31531:5;Name=CG31531-in;Parent=FBtr0078862,FBtr0078863,FBtr0078864;parent_type=mRNA" - - - -	11891	510,767 – 510,867	-	5	100	72.85	-2.29	0.41	0.899618
8661	dm3.chr3R	510,767 – 510,896		11892	510,800 – 510,896	-	5	96	67.74	-1.52	0.43	0.728888
8662	dm3.chr3R	534,597 – 534,717	- - CDS="CDS;ID=CDS_FBgn0051534:4_128;Name=CG31534-cds;Parent=FBtr0273376;parent_type=mRNA" - - - - -	11893	534,597 – 534,717	-	12	120	84.65	-2.36	0.76	0.985833
8663	dm3.chr3R	536,310 – 536,410	- - CDS="CDS;ID=CDS_FBgn0051534:8_126;Name=CG31534-cds;Parent=FBtr0078866;parent_type=mRNA" - - - - -	11894	536,310 – 536,410	+	11	120	75.66	-0.89	0.61	0.547387
8664	dm3.chr3R	541,130 – 541,242	- - - - - - - -	11895	541,130 – 541,242	-	3	113	58.58	-1.40	0.45	0.796033
8665	dm3.chr3R	551,766 – 551,866	- - - intron="intron;ID=intron_FBgn0027570:10_FBgn0027570:9;Name=Nep2-in;Parent=FBtr0078891,FBtr0305133;parent_type=mRNA" - - - -	11896	551,766 – 551,866	+	6	118	74.76	-1.52	0.51	0.510213
8666	dm3.chr3R	553,511 – 553,565	- - - intron="intron;ID=intron_FBgn0027570:10_FBgn0027570:9;Name=Nep2-in;Parent=FBtr0078891,FBtr0305133;parent_type=mRNA" - - - -	11897	553,511 – 553,565	+	12	65	92.33	-1.47	0.92	0.805108
8667	dm3.chr3R	561,326 – 561,429	- - - - - - - -	11898	561,326 – 561,429	+	13	113	62.69	-1.32	0.53	0.995195
8668	dm3.chr3R	567,019 – 567,109	- - - - - - - -	11899	567,019 – 567,109	-	3	113	77.88	-2.39	0.52	0.683541
8669	dm3.chr3R	574,034 – 574,127	- - - - - - - -	11900	574,034 – 574,127	+	6	97	72.16	-0.91	0.63	0.786371
8670	dm3.chr3R	578,502 – 578,602	- - CDS="CDS;ID=CDS_CG31530:4_70;Name=CG31530-cds;Parent=FBtr0078882;parent_type=mRNA" - - - - -	11901	578,502 – 578,602	-	13	121	72.99	-0.96	0.52	0.500000
8671	dm3.chr3R	591,655 – 591,747	- - - intron="intron;ID=intron_CG31530:1_CG31530:2;Name=CG31530-in;Parent=FBtr0078882;parent_type=mRNA" - - - -	11902	591,655 – 591,747	+	4	109	69.62	-2.35	0.76	0.996423
8671	dm3.chr3R	591,655 – 591,747		11903	591,655 – 591,747	-	4	109	69.62	-2.27	0.54	0.973477
8672	dm3.chr3R	596,561 – 596,654	- - - intron="intron;ID=intron_CG31530:1_CG31530:2;Name=CG31530-in;Parent=FBtr0078882;parent_type=mRNA" - - - -	11904	596,561 – 596,654	-	6	101	67.67	-1.85	0.31	0.604664
8673	dm3.chr3R	622,439 – 622,530	- - CDS="CDS;ID=CDS_FBgn0260794:10_36;Name=CG42574-cds;Parent=FBtr0303914;parent_type=mRNA" - - - - -	11905	622,439 – 622,530	+	5	91	97.80	-1.47	0.97	0.829473
8673	dm3.chr3R	622,439 – 622,530		11906	622,439 – 622,530	-	5	91	97.80	-1.96	0.95	0.929353
8674	dm3.chr3R	622,690 – 622,781	- - CDS="CDS;ID=CDS_FBgn0260794:10_36;Name=CG42574-cds;Parent=FBtr0303914;parent_type=mRNA" - - - - -	11907	622,690 – 622,781	+	8	106	63.69	-1.44	0.41	0.940322
8675	dm3.chr3R	644,962 – 645,054	- - CDS="CDS;ID=CDS_CG14657:3_17;Name=CG14657-cds;Parent=FBtr0078875;parent_type=mRNA" - - - - -	11908	644,962 – 645,054	+	8	98	64.69	-2.05	0.22	0.509350
8676	dm3.chr3R	652,816 – 652,912	- - - - - - - -	11909	652,816 – 652,912	+	11	108	72.15	-1.50	0.50	0.929491
8677	dm3.chr3R	653,060 – 653,154	- - - - - - - -	11910	653,060 – 653,154	+	6	99	79.72	-2.00	0.50	0.634436
8677	dm3.chr3R	653,060 – 653,154	- - - - - - - -	11911	653,060 – 653,154	-	6	99	79.72	-2.50	0.36	0.500000
8678	dm3.chr3R	660,450 – 660,545	- - - - - - - -	11912	660,450 – 660,545	+	8	104	73.59	-0.86	0.56	0.500000
8679	dm3.chr3R	669,551 – 669,654	- - - - - - - -	11913	669,551 – 669,654	+	10	104	73.00	-2.25	0.35	0.937173
8680	dm3.chr3R	679,997 – 680,139	- - - intron="intron;ID=intron_CG1133:1_CG1133:2;Name=opa-in;Parent=FBtr0078836;parent_type=mRNA" - - - -	11914	679,997 – 680,104	+	8	118	82.08	-2.52	0.60	0.953557
				11915	679,997 – 680,104	-	8	118	82.08	-2.96	0.64	0.992285
				11916	680,028 – 680,139	+	8	119	82.94	-1.72	0.66	0.716820
8681	dm3.chr3R	680,302 – 680,354	- - - intron="intron;ID=intron_CG1133:1_CG1133:2;Name=opa-in;Parent=FBtr0078836;parent_type=mRNA" - - - -	11917	680,302 – 680,354	-	3	53	96.86	-1.37	1.00	0.883747
8682	dm3.chr3R	680,726 – 680,818	- - - intron="intron;ID=intron_CG1133:1_CG1133:2;Name=opa-in;Parent=FBtr0078836;parent_type=mRNA" - - - -	11918	680,726 – 680,818	-	10	113	61.32	-2.52	0.11	0.500000
8683	dm3.chr3R	697,685 – 697,750	- - - - - - - -	11919	697,685 – 697,750	+	9	66	80.25	-2.32	0.58	0.957507
8684	dm3.chr3R	702,407 – 702,496	- - - - - - - -	11920	702,407 – 702,496	-	5	89	77.05	-1.51	0.68	0.838056
8685	dm3.chr3R	730,085 – 730,182	- - - - - - - -	11921	730,085 – 730,182	+	3	97	74.28	-1.88	0.66	0.828302
8686	dm3.chr3R	736,164 – 736,215	- - - - - - - -	11922	736,164 – 736,215	+	4	53	69.87	-1.89	0.39	0.536517
8687	dm3.chr3R	745,572 – 745,667	- - - intron="intron;ID=intron_FBgn0051536:3_FBgn0051536:4;Name=Cdep-in;Parent=FBtr0110958,FBtr0078840;parent_type=mRNA" - - - -	11923	745,572 – 745,667	+	3	95	91.55	-1.80	0.84	0.663584
8688	dm3.chr3R	751,594 – 751,764	- - CDS="CDS;ID=CDS_FBgn0051536:11_90;Name=Cdep-cds;Parent=FBtr0110958;parent_type=mRNA" - - - - -	11924	751,594 – 751,711	-	13	120	87.20	-1.52	0.79	0.740465
8688	dm3.chr3R	751,594 – 751,764		11925	751,674 – 751,764	-	12	101	75.03	-0.91	0.72	0.891689
8689	dm3.chr3R	760,841 – 760,927	- - CDS="CDS;ID=CDS_FBgn0085335:2_92;Name=CG34306-cds;Parent=FBtr0112502;parent_type=mRNA" - - - - -	11926	760,841 – 760,927	+	13	86	74.05	-1.39	0.53	0.944939
8690	dm3.chr3R	763,006 – 763,108	- - CDS="CDS;ID=CDS_FBgn0085335:2_92;Name=CG34306-cds;Parent=FBtr0112502;parent_type=mRNA" - - - - -	11927	763,006 – 763,108	+	13	108	74.40	-1.69	0.38	0.573914
8691	dm3.chr3R	773,638 – 773,777	FBnoncoding="snRNA;ID=FBtr0078851;Name=snRNA:U1:82Eb-RA;Parent=FBgn0004183;Dbxref=FlyBase_Annotation_IDs:CR32862-RA,REFSEQ:NR_001982;score_text=Weakly" - - - "Rfam_10.0=RF00003;U1;M17639.1/2-131\|5.3e-53" "Noncode_2.0=n368_u348_AE003604_snRNA_Drosophila\|6.9e-74" "unique_Noncode_2.0=u348_snRNA_Drosophila\|6.0e-74" -	11928	773,638 – 773,777	+	12	168	88.46	-1.64	0.75	0.536045
8691	dm3.chr3R	773,638 – 773,777		11929	773,638 – 773,777	-	12	168	88.46	-1.45	0.82	0.633511
8692	dm3.chr3R	778,309 – 778,378	- - - - - - - -	11930	778,309 – 778,378	-	6	69	79.52	-1.75	0.57	0.722431
8693	dm3.chr3R	781,801 – 781,892	- - - - - - - -	11931	781,801 – 781,892	+	6	92	87.45	-1.79	0.70	0.537404
8694	dm3.chr3R	792,668 – 792,810	- - - intron="intron;ID=intron_CG1124:1_CG1124:2;Name=CG1124-in;Parent=FBtr0078841;parent_type=mRNA" - - - -	11932	792,668 – 792,810	+	3	145	61.39	-2.54	0.30	0.777472
8695	dm3.chr3R	795,313 – 795,365	- - - - - - - -	11933	795,313 – 795,365	+	3	63	75.66	-2.74	0.74	0.993513
8696	dm3.chr3R	796,515 – 796,662	- - - - - - - -	11934	796,515 – 796,626	+	4	120	73.49	-1.24	0.69	0.670247
8696	dm3.chr3R	796,515 – 796,662	- - - - - - - -	11935	796,552 – 796,662	+	5	120	69.23	-1.38	0.51	0.783424
8697	dm3.chr3R	800,283 – 800,341	- - - - - - - -	11936	800,283 – 800,341	-	10	71	65.46	-3.20	0.07	0.611530
8698	dm3.chr3R	802,747 – 802,798	- - - - - - - -	11937	802,747 – 802,798	+	6	61	58.30	-1.84	0.29	0.948883
8698	dm3.chr3R	802,747 – 802,798	- - - - - - - -	11938	802,747 – 802,798	-	6	61	58.30	-1.37	0.26	0.566328
8699	dm3.chr3R	826,185 – 826,291	- - - intron="intron;ID=intron_FBgn0037292:4_FBgn0037292:3;Name=CG2022-in;Parent=FBtr0301312;parent_type=mRNA" - - - -	11939	826,185 – 826,291	+	4	111	67.08	-1.37	0.54	0.850909
8700	dm3.chr3R	840,720 – 840,783	- - - - - - - -	11940	840,720 – 840,783	+	3	63	96.77	-0.87	1.00	0.611577
8700	dm3.chr3R	840,720 – 840,783	- - - - - - - -	11941	840,720 – 840,783	-	3	63	96.77	-1.68	1.00	0.944614
8701	dm3.chr3R	843,327 – 843,393	- - - - - - - -	11942	843,327 – 843,393	-	5	66	75.54	-0.58	0.81	0.537715
8702	dm3.chr3R	850,061 – 850,201	- - - - - - - -	11943	850,061 – 850,165	+	12	118	89.83	-2.29	0.66	0.699149
				11944	850,061 – 850,165	-	12	118	89.83	-2.30	0.65	0.671672
				11945	850,087 – 850,201	+	10	116	84.77	-2.70	0.73	0.989047
				11946	850,087 – 850,201	-	10	116	84.77	-3.69	0.72	0.998779
8703	dm3.chr3R	852,522 – 852,652	- - - - - - - -	11947	852,522 – 852,634	-	6	119	78.77	-3.00	0.75	0.998388
8703	dm3.chr3R	852,522 – 852,652	- - - - - - - -	11948	852,534 – 852,652	-	6	120	77.28	-2.18	0.79	0.991893
8704	dm3.chr3R	855,547 – 855,627	- - - - - - - -	11949	855,547 – 855,627	-	4	80	76.46	-1.34	0.65	0.538577
8705	dm3.chr3R	870,056 – 870,142	- - - - - - - -	11950	870,056 – 870,142	+	4	86	91.47	-1.57	0.96	0.917400
8706	dm3.chr3R	885,549 – 885,658	- - - - - - - -	11951	885,549 – 885,658	-	5	112	77.77	-2.31	0.60	0.939000
8707	dm3.chr3R	903,483 – 903,546	- - - - - - - -	11952	903,483 – 903,546	+	4	63	98.41	-1.50	0.96	0.789773
8707	dm3.chr3R	903,483 – 903,546	- - - - - - - -	11953	903,483 – 903,546	-	4	63	98.41	-3.02	0.92	0.988850
8708	dm3.chr3R	907,710 – 907,781	- - - - - - - -	11954	907,710 – 907,781	+	8	73	67.60	-2.11	0.28	0.856157
8709	dm3.chr3R	920,006 – 920,059	- - - - - - - -	11955	920,006 – 920,059	-	5	53	92.45	-1.70	0.83	0.586675
8710	dm3.chr3R	921,933 – 921,983	- - - - - - - -	11956	921,933 – 921,983	-	5	50	97.60	-1.87	1.00	0.964980
8711	dm3.chr3R	933,190 – 933,289	- - - - - - - -	11957	933,190 – 933,289	+	4	99	73.98	-1.54	0.57	0.646303
8712	dm3.chr3R	938,695 – 938,792	- - - - - - - -	11958	938,695 – 938,792	-	12	109	81.76	-1.34	0.70	0.654689
8713	dm3.chr3R	940,841 – 940,935	- - - - - - - -	11959	940,841 – 940,935	+	4	120	65.93	-1.14	0.51	0.559118
8714	dm3.chr3R	943,063 – 943,121	- - - - - - - -	11960	943,063 – 943,121	+	5	65	64.77	-1.89	0.43	0.933708
8715	dm3.chr3R	967,463 – 967,642	- - - - - - - -	11961	967,463 – 967,570	+	3	107	81.76	-0.98	0.90	0.576756
8715	dm3.chr3R	967,463 – 967,642	- - - - - - - -	11962	967,530 – 967,642	+	3	118	79.71	-3.16	0.70	0.993337
8716	dm3.chr3R	968,483 – 968,580	- - - - - - - -	11963	968,483 – 968,580	+	8	112	76.17	-1.56	0.57	0.821551
8717	dm3.chr3R	982,527 – 982,633	- - - intron="intron;ID=intron_FBgn0037295:2_FBgn0037295:4;Name=dpr16-in;Parent=FBtr0078772;parent_type=mRNA" - - - -	11964	982,527 – 982,633	+	4	116	66.16	-1.33	0.48	0.616892
8717	dm3.chr3R	982,527 – 982,633		11965	982,527 – 982,633	-	4	116	66.16	-1.04	0.52	0.507211
8718	dm3.chr3R	983,550 – 983,671	- - - intron="intron;ID=intron_FBgn0037295:2_FBgn0037295:4;Name=dpr16-in;Parent=FBtr0078772;parent_type=mRNA" - - - -	11966	983,550 – 983,671	+	6	124	85.52	-1.55	0.74	0.588973
8719	dm3.chr3R	1,006,377 – 1,006,497	- - CDS="CDS;ID=CDS_FBgn0259212:7_159;Name=cno-cds;Parent=FBtr0299710;parent_type=mRNA" intron="intron;ID=intron_FBgn0259212:8_FBgn0259212:6;Name=cno-in;Parent=FBtr0299709,FBtr0300525;parent_type=mRNA" - - - -	11967	1,006,377 – 1,006,497	+	11	120	84.73	-1.65	0.68	0.690683
8720	dm3.chr3R	1,019,481 – 1,019,606	- - - intron="intron;ID=intron_FBgn0259212:17_FBgn0259212:16;Name=cno-in;Parent=FBtr0299709,FBtr0299710,FBtr0300525;parent_type=mRNA" - - - -	11968	1,019,481 – 1,019,575	+	6	112	69.33	-2.08	0.48	0.964722
				11969	1,019,481 – 1,019,575	-	6	112	69.33	-2.71	0.47	0.994972
				11970	1,019,504 – 1,019,606	+	5	120	62.99	-1.92	0.43	0.945691
				11971	1,019,504 – 1,019,606	-	5	120	62.99	-2.34	0.37	0.960767
8721	dm3.chr3R	1,031,740 – 1,031,811	- - - intron="intron;ID=intron_FBgn0259212:22_FBgn0259212:21;Name=cno-in;Parent=FBtr0299709,FBtr0299710,FBtr0300525;parent_type=mRNA" - - - -	11972	1,031,740 – 1,031,811	+	7	77	66.44	-2.01	0.45	0.986518
8722	dm3.chr3R	1,037,735 – 1,037,825	- - - intron="intron;ID=intron_FBgn0259212:22_FBgn0259212:21;Name=cno-in;Parent=FBtr0299709,FBtr0299710,FBtr0300525;parent_type=mRNA" - - - -	11973	1,037,735 – 1,037,825	-	6	97	72.81	-1.46	0.53	0.753767
8723	dm3.chr3R	1,054,809 – 1,054,868	- - - intron="intron;ID=intron_FBgn0040208:3_FBgn0040208:2;Name=katanin-60-in;Parent=FBtr0078827;parent_type=mRNA" - - - -	11974	1,054,809 – 1,054,868	-	4	59	87.29	-1.87	0.75	0.651192
8724	dm3.chr3R	1,064,195 – 1,064,315	- - CDS="CDS;ID=CDS_FBgn0260462:3_199;Name=CG12163-cds;Parent=FBtr0078822,FBtr0078823;parent_type=mRNA" - - - - -	11975	1,064,195 – 1,064,315	-	13	120	81.08	-1.54	0.58	0.717961
8725	dm3.chr3R	1,072,290 – 1,072,390	- - - intron="intron;ID=intron_FBgn0260462:7_FBgn0260462:6;Name=CG12163-in;Parent=FBtr0078823;parent_type=mRNA" - - - -	11976	1,072,290 – 1,072,389	+	5	99	92.53	-1.87	0.91	0.915376
8725	dm3.chr3R	1,072,290 – 1,072,390		11977	1,072,291 – 1,072,390	+	5	99	92.53	-2.09	0.90	0.943425
8726	dm3.chr3R	1,076,257 – 1,076,329	- - - intron="intron;ID=intron_FBgn0260462:7_FBgn0260462:6;Name=CG12163-in;Parent=FBtr0078823;parent_type=mRNA" - - - -	11978	1,076,257 – 1,076,329	+	3	72	87.96	-2.53	0.77	0.930932
8727	dm3.chr3R	1,077,106 – 1,077,201	- - - - - - - -	11979	1,077,106 – 1,077,201	+	5	95	98.32	-2.40	0.98	0.984638
8727	dm3.chr3R	1,077,106 – 1,077,201	- - - - - - - -	11980	1,077,106 – 1,077,201	-	5	95	98.32	-1.06	1.01	0.771701
8728	dm3.chr3R	1,081,840 – 1,081,909	- - - intron="intron;ID=intron_FBgn0037305:4_FBgn0037305:3;Name=CG12173-in;Parent=FBtr0078821,FBtr0300669;parent_type=mRNA" - - - -	11981	1,081,840 – 1,081,909	+	4	69	66.91	-0.89	0.55	0.563007
8729	dm3.chr3R	1,087,991 – 1,088,043	- - - intron="intron;ID=intron_FBgn0037307:2_FBgn0037307:1;Name=Tim17a2-in;Parent=FBtr0078820;parent_type=mRNA" - - - -	11982	1,087,991 – 1,088,043	+	4	52	95.19	-2.13	1.02	0.989640
8729	dm3.chr3R	1,087,991 – 1,088,043		11983	1,087,991 – 1,088,043	-	4	52	95.19	-1.00	0.98	0.650661
8730	dm3.chr3R	1,090,099 – 1,090,253	- - - - - - - -	11984	1,090,099 – 1,090,253	+	5	163	79.79	-2.07	0.66	0.933497
8731	dm3.chr3R	1,104,737 – 1,104,834	- - - intron="intron;ID=intron_FBgn0013576:7_FBgn0013576:5;Name=l(3)82Fd-in;Parent=FBtr0273430;parent_type=mRNA" - - - -	11985	1,104,737 – 1,104,834	+	5	106	66.28	-2.21	0.51	0.991702
8732	dm3.chr3R	1,105,270 – 1,105,340	- - - intron="intron;ID=intron_FBgn0013576:7_FBgn0013576:5;Name=l(3)82Fd-in;Parent=FBtr0273430;parent_type=mRNA" - - - -	11986	1,105,270 – 1,105,340	-	9	79	71.14	-0.42	0.77	0.747721
8733	dm3.chr3R	1,106,283 – 1,106,394	- - - intron="intron;ID=intron_FBgn0013576:7_FBgn0013576:5;Name=l(3)82Fd-in;Parent=FBtr0273430;parent_type=mRNA" - - - -	11987	1,106,283 – 1,106,394	-	8	116	69.89	-1.70	0.35	0.589602
8734	dm3.chr3R	1,108,646 – 1,108,745	- - - - - - - -	11988	1,108,646 – 1,108,745	-	9	106	63.66	-1.60	0.33	0.792678
8735	dm3.chr3R	1,115,919 – 1,116,023	- - - - - - - -	11989	1,115,919 – 1,116,023	-	6	114	65.69	-1.13	0.43	0.645373
8736	dm3.chr3R	1,118,482 – 1,118,587	- - CDS="CDS;ID=CDS_FBgn0013576:11_94;Name=l(3)82Fd-cds;Parent=FBtr0100199;parent_type=mRNA" - - - - -	11990	1,118,482 – 1,118,585	-	15	110	73.22	-1.42	0.44	0.875111
				11991	1,118,491 – 1,118,587	+	14	99	76.68	-0.94	0.54	0.591502
				11992	1,118,491 – 1,118,587	-	14	99	76.68	-0.87	0.65	0.831332
8737	dm3.chr3R	1,119,384 – 1,119,491	- - CDS="CDS;ID=CDS_FBgn0013576:14_143;Name=l(3)82Fd-cds;Parent=FBtr0110933;parent_type=mRNA" - - - - -	11993	1,119,384 – 1,119,491	+	14	110	83.37	-2.14	0.62	0.950665
8737	dm3.chr3R	1,119,384 – 1,119,491		11994	1,119,384 – 1,119,491	-	14	110	83.37	-2.25	0.55	0.923336
8738	dm3.chr3R	1,130,299 – 1,130,429	- - - intron="intron;ID=intron_FBgn0013576:28_FBgn0013576:26;Name=l(3)82Fd-in;Parent=FBtr0110932;parent_type=mRNA" - - - -	11995	1,130,299 – 1,130,429	+	4	137	74.59	-0.97	0.75	0.593950
8739	dm3.chr3R	1,132,706 – 1,132,847	- - - intron="intron;ID=intron_FBgn0013576:30_FBgn0013576:29;Name=l(3)82Fd-in;Parent=FBtr0078818,FBtr0078812;parent_type=mRNA" - - - -	11996	1,132,706 – 1,132,847	-	7	143	68.93	-1.90	0.36	0.724568
8740	dm3.chr3R	1,134,891 – 1,134,983	- - - - - - - -	11997	1,134,891 – 1,134,983	+	4	98	70.86	-2.08	0.46	0.827920
8741	dm3.chr3R	1,135,582 – 1,135,637	- - - - - - - -	11998	1,135,582 – 1,135,637	-	5	55	78.73	-1.27	0.73	0.707516
8742	dm3.chr3R	1,177,889 – 1,177,997	- - - - - - - -	11999	1,177,889 – 1,177,997	+	7	120	82.22	-2.07	0.70	0.930936
8743	dm3.chr3R	1,188,012 – 1,188,107	- - - - - - - -	12000	1,188,012 – 1,188,107	+	3	95	91.58	-2.01	0.85	0.829198
8743	dm3.chr3R	1,188,012 – 1,188,107	- - - - - - - -	12001	1,188,012 – 1,188,107	-	3	95	91.58	-1.98	0.92	0.938326
8744	dm3.chr3R	1,188,826 – 1,188,926	- - - - - - - -	12002	1,188,826 – 1,188,926	+	5	100	80.10	-1.51	0.64	0.575608
8745	dm3.chr3R	1,213,940 – 1,214,021	FBnoncoding="tRNA;ID=FBtr0078790;Name=tRNA:R:83AB-RA;Parent=FBgn0011965;Dbxref=FlyBase_Annotation_IDs:CR31593-RA;score_text=Weakly" tRNAscann="Arg_chr3R_trna1" - intron="intron;ID=intron_FBgn0001311:14_FBgn0001311:13;Name=kkv-in;Parent=FBtr0078798,FBtr0078800,FBtr0301398;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAJJ01004069.1/7732-7804\|5.1e-27" - - -	12003	1,213,940 – 1,214,021	+	13	81	95.57	-1.96	1.00	0.980938
8745	dm3.chr3R	1,213,940 – 1,214,021		12004	1,213,940 – 1,214,021	-	13	81	95.57	-3.43	0.99	0.998355
8746	dm3.chr3R	1,222,306 – 1,222,396	- - - - - - - -	12005	1,222,306 – 1,222,396	-	3	96	94.33	-0.80	1.00	0.610619
8747	dm3.chr3R	1,230,751 – 1,230,806	- - - - - - - -	12006	1,230,751 – 1,230,806	-	7	55	86.99	-2.13	0.77	0.899359
8748	dm3.chr3R	1,244,687 – 1,244,792	- - - intron="intron;ID=intron_FBgn0037326:2_FBgn0037326:3;Name=CG14669-in;Parent=FBtr0078679;parent_type=mRNA" - - - -	12007	1,244,687 – 1,244,792	+	6	117	73.52	-1.82	0.44	0.672517
8749	dm3.chr3R	1,251,494 – 1,251,634	- - CDS="CDS;ID=CDS_CG12147:1_54;Name=CG12147-cds;Parent=FBtr0078793;parent_type=mRNA" intron="intron;ID=intron_FBgn0037326:2_FBgn0037326:3;Name=CG14669-in;Parent=FBtr0078679;parent_type=mRNA" - - - -	12008	1,251,494 – 1,251,634	+	7	140	61.38	-1.45	0.35	0.874365
8749	dm3.chr3R	1,251,494 – 1,251,634		12009	1,251,494 – 1,251,634	-	7	140	61.38	-0.51	0.43	0.500000
8750	dm3.chr3R	1,264,297 – 1,264,349	- - - intron="intron;ID=intron_FBgn0037326:3_FBgn0037326:4;Name=CG14669-in;Parent=FBtr0078679;parent_type=mRNA" - - - -	12010	1,264,297 – 1,264,349	+	7	52	93.22	-1.44	0.97	0.893756
8751	dm3.chr3R	1,280,274 – 1,280,331	- - - intron="intron;ID=intron_FBgn0037326:4_FBgn0037326:5;Name=CG14669-in;Parent=FBtr0078679;parent_type=mRNA" - - - -	12011	1,280,274 – 1,280,331	+	3	57	91.72	-0.83	0.99	0.633020
8752	dm3.chr3R	1,287,039 – 1,287,158	- - CDS="CDS;ID=CDS_CG2087:3_43;Name=PEK-cds;Parent=FBtr0078770;parent_type=mRNA" - - - - -	12012	1,287,039 – 1,287,158	-	13	119	76.32	-1.59	0.42	0.642557
8753	dm3.chr3R	1,297,230 – 1,297,402	- - - intron="intron;ID=intron_FBgn0011715:1_FBgn0011715:2;Name=Snr1-in;Parent=FBtr0078682;parent_type=mRNA" - - - -	12013	1,297,230 – 1,297,330	+	3	108	89.24	-1.99	0.82	0.791341
8753	dm3.chr3R	1,297,230 – 1,297,402		12014	1,297,300 – 1,297,402	+	3	110	83.23	-2.79	0.48	0.591474
8754	dm3.chr3R	1,359,337 – 1,359,387	- - - intron="intron;ID=intron_CG1063:12_CG1063:13;Name=Itp-r83A-in;Parent=FBtr0078686,FBtr0078687;parent_type=mRNA" - - - -	12015	1,359,337 – 1,359,387	+	3	50	92.00	-4.40	1.00	0.999067
8754	dm3.chr3R	1,359,337 – 1,359,387		12016	1,359,337 – 1,359,387	-	3	50	92.00	-2.26	0.77	0.722418
8755	dm3.chr3R	1,369,234 – 1,369,333	- - CDS="CDS;ID=CDS_CG2519:6_89;Name=CG2519-cds;Parent=FBtr0078762;parent_type=mRNA" - - - - -	12017	1,369,234 – 1,369,333	-	14	120	77.12	-1.17	0.61	0.616340
8756	dm3.chr3R	1,394,176 – 1,394,273	- - - - - - - -	12018	1,394,176 – 1,394,273	+	11	114	64.73	-0.98	0.39	0.745583
8756	dm3.chr3R	1,394,176 – 1,394,273	- - - - - - - -	12019	1,394,176 – 1,394,273	-	11	114	64.73	-0.85	0.39	0.631422
8757	dm3.chr3R	1,399,024 – 1,399,136	- - - intron="intron;ID=intron_FBgn0023023:1_FBgn0023023:2;Name=CRMP-in;Parent=FBtr0089686,FBtr0089685,FBtr0089684,FBtr0114453;parent_type=mRNA" - - - -	12020	1,399,024 – 1,399,136	-	5	113	82.83	-1.74	0.68	0.668613
8758	dm3.chr3R	1,418,058 – 1,418,153	- - - intron="intron;ID=intron_CG1088:6_CG1088:3;Name=Vha26-in;Parent=FBtr0078701;parent_type=mRNA" - - - -	12021	1,418,058 – 1,418,153	-	12	111	69.33	-2.54	0.28	0.929897
8759	dm3.chr3R	1,419,288 – 1,419,411	- - - - - - - -	12022	1,419,288 – 1,419,395	+	5	107	97.20	-2.24	0.98	0.980765
8759	dm3.chr3R	1,419,288 – 1,419,411	- - - - - - - -	12023	1,419,320 – 1,419,411	+	5	91	97.80	-1.97	0.99	0.966994
8760	dm3.chr3R	1,419,703 – 1,419,838	- - - - - - - -	12024	1,419,703 – 1,419,808	+	12	117	64.44	-2.94	0.36	0.999132
				12025	1,419,703 – 1,419,808	-	12	117	64.44	-2.26	0.31	0.976600
				12026	1,419,737 – 1,419,838	+	12	117	66.36	-2.42	0.34	0.986631
				12027	1,419,737 – 1,419,838	-	12	117	66.36	-1.98	0.32	0.903787
8761	dm3.chr3R	1,422,083 – 1,422,202	FBnoncoding="snoRNA;ID=FBtr0113577;Name=snoRNA:Psi28S-3385a-RA;Parent=FBgn0082962;Dbxref=FlyBase_Annotation_IDs:CR34608-RA,REFSEQ:NR_003881;score_text=Weakly" - - intron="intron;ID=intron_CG2922:7_CG2922:9;Name=exba-in;Parent=FBtr0078745;parent_type=mRNA" - - - -	12028	1,422,083 – 1,422,202	-	10	123	72.46	-0.52	0.73	0.835565
8762	dm3.chr3R	1,422,237 – 1,422,317	FBnoncoding="snoRNA;ID=FBtr0113578;Name=snoRNA:Psi28S-3091b-RA;Parent=FBgn0082978;Dbxref=FlyBase_Annotation_IDs:CR34609-RA,REFSEQ:NR_003882;score_text=Weakly" - - intron="intron;ID=intron_CG2922:7_CG2922:9;Name=exba-in;Parent=FBtr0078745;parent_type=mRNA" - - - -	12029	1,422,237 – 1,422,317	-	11	95	67.88	-2.55	0.58	0.999586
8763	dm3.chr3R	1,423,367 – 1,423,495	FBnoncoding="snoRNA;ID=FBtr0113580;Name=snoRNA:Psi28S-3571-RA;Parent=FBgn0082954;Dbxref=FlyBase_Annotation_IDs:CR34611-RA,REFSEQ:NR_003884;score_text=Weakly" - - intron="intron;ID=intron_CG2922:5_CG2922:6;Name=exba-in;Parent=FBtr0078744,FBtr0078745,FBtr0078746,FBtr0078747,FBtr0078748,FBtr0078749,FBtr0078750;parent_type=mRNA" - - - -	12030	1,423,367 – 1,423,476	-	11	120	68.60	-1.25	0.52	0.943672
8763	dm3.chr3R	1,423,367 – 1,423,495		12031	1,423,398 – 1,423,495	-	11	109	69.40	-1.14	0.61	0.970629
8764	dm3.chr3R	1,424,146 – 1,424,327	FBnoncoding="snoRNA;ID=FBtr0113581;Name=snoRNA:Psi28S-2442b-RA;Parent=FBgn0082988;Dbxref=FlyBase_Annotation_IDs:CR34612-RA,REFSEQ:NR_003885;score_text=Weakly" - - intron="intron;ID=intron_CG2922:3_CG2922:4;Name=exba-in;Parent=FBtr0078744,FBtr0078745,FBtr0078746,FBtr0078747,FBtr0078748,FBtr0078749,FBtr0078750;parent_type=mRNA" - - - -	12032	1,424,146 – 1,424,262	-	12	119	75.60	-1.19	0.49	0.525084
				12033	1,424,186 – 1,424,295	-	12	117	74.55	-1.43	0.61	0.963031
				12034	1,424,226 – 1,424,327	-	12	112	61.11	-1.33	0.47	0.993951
8765	dm3.chr3R	1,424,419 – 1,424,514	FBnoncoding="snoRNA;ID=FBtr0113582;Name=snoRNA:Psi28S-2442a-RA;Parent=FBgn0082989;Dbxref=FlyBase_Annotation_IDs:CR34613-RA,REFSEQ:NR_003886;score_text=Weakly" - - intron="intron;ID=intron_CG2922:3_CG2922:4;Name=exba-in;Parent=FBtr0078744,FBtr0078745,FBtr0078746,FBtr0078747,FBtr0078748,FBtr0078749,FBtr0078750;parent_type=mRNA" - - - -	12035	1,424,419 – 1,424,514	-	11	100	65.47	-1.88	0.57	0.998942
8765	dm3.chr3R	1,424,419 – 1,424,514		12036	1,424,422 – 1,424,514	-	11	97	64.07	-1.83	0.44	0.995584
8766	dm3.chr3R	1,438,158 – 1,438,249	- - - - - - - -	12037	1,438,158 – 1,438,249	+	9	103	74.38	-1.61	0.55	0.868857
8767	dm3.chr3R	1,445,841 – 1,445,936	- - - intron="intron;ID=intron_FBgn0044823:3_FBgn0044823:2;Name=Spec2-in;Parent=FBtr0078739;parent_type=mRNA" - - - -	12038	1,445,841 – 1,445,936	+	5	95	71.35	-1.77	0.62	0.959666
8768	dm3.chr3R	1,450,605 – 1,450,743	- - CDS="CDS;ID=CDS_CG1475:2_53;Name=RpL13A-cds;Parent=FBtr0078705;parent_type=mRNA" - - - - -	12039	1,450,605 – 1,450,743	+	15	138	81.35	-1.80	0.53	0.806515
8769	dm3.chr3R	1,451,705 – 1,451,810	- - - - - - - -	12040	1,451,705 – 1,451,810	-	3	105	70.13	-2.38	0.60	0.970988
8770	dm3.chr3R	1,456,673 – 1,456,763	- - CDS="CDS;ID=CDS_CG31551:1_48;Name=CG31551-cds;Parent=FBtr0078706;parent_type=mRNA" - - - - -	12041	1,456,673 – 1,456,763	+	5	90	83.11	-1.69	0.67	0.577841
8771	dm3.chr3R	1,475,838 – 1,475,928	- - CDS="CDS;ID=CDS_FBgn0262125:5_94;Name=sec23-cds;Parent=FBtr0304793,FBtr0304794,FBtr0078710,FBtr0078711;parent_type=mRNA" - - - - -	12042	1,475,838 – 1,475,928	+	14	107	68.11	-1.96	0.38	0.957940
8772	dm3.chr3R	1,488,626 – 1,488,716	- - - intron="intron;ID=intron_CG1109:4_CG1109:5;Name=CG1109-in;Parent=FBtr0078713,FBtr0078714;parent_type=mRNA" - - - -	12043	1,488,626 – 1,488,716	-	6	107	58.20	-1.63	0.30	0.828872
8773	dm3.chr3R	1,517,173 – 1,517,287	- - - intron="intron;ID=intron_FBgn0261261:2_FBgn0261261:3;Name=plx-in;Parent=FBtr0302091;parent_type=mRNA" - - - -	12044	1,517,173 – 1,517,273	-	4	104	81.65	-2.06	0.66	0.780735
8773	dm3.chr3R	1,517,173 – 1,517,287		12045	1,517,177 – 1,517,287	-	4	110	86.45	-2.06	0.71	0.697003
8774	dm3.chr3R	1,521,276 – 1,521,379	- - - intron="intron;ID=intron_FBgn0261261:2_FBgn0261261:3;Name=plx-in;Parent=FBtr0302091;parent_type=mRNA" - - - -	12046	1,521,276 – 1,521,374	-	4	114	56.55	-1.51	0.37	0.884497
8774	dm3.chr3R	1,521,276 – 1,521,379		12047	1,521,280 – 1,521,379	-	4	117	57.06	-1.74	0.35	0.890221
8775	dm3.chr3R	1,525,704 – 1,525,804	- - - intron="intron;ID=intron_FBgn0261261:3_FBgn0261261:6;Name=plx-in;Parent=FBtr0302091;parent_type=mRNA" - - - -	12048	1,525,704 – 1,525,804	+	4	103	74.87	-1.85	0.59	0.767503
8776	dm3.chr3R	1,531,732 – 1,531,822	- - - intron="intron;ID=intron_FBgn0261261:4_FBgn0261261:6;Name=plx-in;Parent=FBtr0302092;parent_type=mRNA" - - - -	12049	1,531,732 – 1,531,822	+	4	91	87.29	-2.03	0.69	0.553414
8777	dm3.chr3R	1,534,180 – 1,534,282	- - - - - - - -	12050	1,534,180 – 1,534,282	+	13	115	65.23	-0.26	0.48	0.516768
8778	dm3.chr3R	1,544,085 – 1,544,191	- - - - - - - -	12051	1,544,085 – 1,544,191	+	9	118	76.01	-1.64	0.65	0.959783
8778	dm3.chr3R	1,544,085 – 1,544,191	- - - - - - - -	12052	1,544,085 – 1,544,191	-	9	118	76.01	-1.53	0.65	0.941602
8779	dm3.chr3R	1,545,298 – 1,545,362	- - - - - - - -	12053	1,545,298 – 1,545,362	-	12	70	72.33	-1.95	0.33	0.654233
8780	dm3.chr3R	1,547,652 – 1,547,774	- - - - - - - -	12054	1,547,652 – 1,547,745	+	10	106	79.20	-2.24	0.63	0.979973
				12055	1,547,652 – 1,547,745	-	10	106	79.20	-1.50	0.64	0.806629
				12056	1,547,673 – 1,547,774	+	9	116	78.71	-1.58	0.58	0.721759
8781	dm3.chr3R	1,549,316 – 1,549,420	- - - - - - - -	12057	1,549,316 – 1,549,420	+	8	115	72.34	-1.21	0.60	0.788466
8781	dm3.chr3R	1,549,316 – 1,549,420	- - - - - - - -	12058	1,549,316 – 1,549,420	-	8	115	72.34	-1.64	0.63	0.961163
8782	dm3.chr3R	1,572,543 – 1,572,593	- - - - - - - -	12059	1,572,543 – 1,572,593	+	4	50	96.33	-0.92	1.06	0.900035
8782	dm3.chr3R	1,572,543 – 1,572,593	- - - - - - - -	12060	1,572,543 – 1,572,593	-	4	50	96.33	-0.80	1.03	0.751945
8783	dm3.chr3R	1,596,385 – 1,596,475	- - - intron="intron;ID=intron_FBgn0027608:16_FBgn0027608:14;Name=CG2082-in;Parent=FBtr0078675;parent_type=mRNA" - - - -	12061	1,596,385 – 1,596,475	+	8	109	65.44	-1.42	0.53	0.972913
8783	dm3.chr3R	1,596,385 – 1,596,475		12062	1,596,385 – 1,596,475	-	8	109	65.44	-1.35	0.47	0.912986
8784	dm3.chr3R	1,601,974 – 1,602,112	- - - - - - - -	12063	1,601,974 – 1,602,076	-	4	116	66.12	-0.96	0.52	0.542860
8784	dm3.chr3R	1,601,974 – 1,602,112	- - - - - - - -	12064	1,602,012 – 1,602,112	-	5	114	64.43	-1.13	0.55	0.931933
8785	dm3.chr3R	1,624,009 – 1,624,121	- - CDS="CDS;ID=CDS_CG10979:5_72;Name=CG10979-cds;Parent=FBtr0078631;parent_type=mRNA" - - - - -	12065	1,624,009 – 1,624,121	+	12	117	82.20	-1.96	0.49	0.522646
8786	dm3.chr3R	1,630,012 – 1,630,119	- - - intron="intron;ID=intron_FBgn0037380:1_FBgn0037380:2;Name=CG11000-in;Parent=FBtr0113195;parent_type=mRNA" - - - -	12066	1,630,012 – 1,630,119	-	3	115	72.41	-1.14	0.75	0.566359
8787	dm3.chr3R	1,633,024 – 1,633,170	- - - - - - - -	12067	1,633,024 – 1,633,170	+	9	152	70.55	-0.85	0.52	0.698237
8788	dm3.chr3R	1,642,490 – 1,642,582	- - CDS="CDS;ID=CDS_FBgn0261561:5_213;Name=CG42675-cds;Parent=FBtr0302727;parent_type=mRNA" intron="intron;ID=intron_FBgn0261561:4_FBgn0261561:6;Name=CG42675-in;Parent=FBtr0302724,FBtr0303165;parent_type=mRNA" - - - -	12068	1,642,490 – 1,642,582	+	5	92	65.70	-2.01	0.57	0.994455
8788	dm3.chr3R	1,642,490 – 1,642,582		12069	1,642,490 – 1,642,582	-	5	92	65.70	-1.58	0.66	0.990324
8789	dm3.chr3R	1,666,198 – 1,666,250	- - - - - - - -	12070	1,666,198 – 1,666,250	+	5	58	69.12	-1.14	0.51	0.522627
8790	dm3.chr3R	1,695,447 – 1,695,555	- - - intron="intron;ID=intron_FBgn0083949:4_FBgn0083949:3;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12071	1,695,447 – 1,695,555	-	8	120	78.40	-2.33	0.45	0.830134
8791	dm3.chr3R	1,700,832 – 1,700,934	- - - intron="intron;ID=intron_FBgn0083949:6_FBgn0083949:4;Name=CG34113-in;Parent=FBtr0110806;parent_type=mRNA" - - - -	12072	1,700,832 – 1,700,934	-	4	118	70.81	-1.74	0.44	0.586988
8792	dm3.chr3R	1,702,675 – 1,702,766	- - - intron="intron;ID=intron_FBgn0083949:7_FBgn0083949:5;Name=CG34113-in;Parent=FBtr0110807;parent_type=mRNA" - - - -	12073	1,702,675 – 1,702,766	-	5	115	65.00	-1.58	0.44	0.768879
8793	dm3.chr3R	1,708,849 – 1,708,943	- - - intron="intron;ID=intron_FBgn0083949:10_FBgn0083949:9;Name=CG34113-in;Parent=FBtr0110807;parent_type=mRNA" - - - -	12074	1,708,849 – 1,708,943	+	7	104	70.03	-2.62	0.31	0.908715
8794	dm3.chr3R	1,709,951 – 1,710,052	- - - intron="intron;ID=intron_FBgn0083949:10_FBgn0083949:9;Name=CG34113-in;Parent=FBtr0110807;parent_type=mRNA" - - - -	12075	1,709,951 – 1,710,052	+	11	117	81.66	-2.06	0.49	0.628355
8794	dm3.chr3R	1,709,951 – 1,710,052		12076	1,709,951 – 1,710,052	-	11	117	81.66	-1.66	0.57	0.556061
8795	dm3.chr3R	1,714,316 – 1,714,424	- - - intron="intron;ID=intron_FBgn0083949:15_FBgn0083949:14;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12077	1,714,316 – 1,714,424	-	6	112	68.25	-0.85	0.50	0.610669
8796	dm3.chr3R	1,720,294 – 1,720,414	- - - intron="intron;ID=intron_FBgn0083949:18_FBgn0083949:17;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12078	1,720,294 – 1,720,414	+	4	120	86.25	-2.23	0.70	0.811795
8797	dm3.chr3R	1,721,602 – 1,721,652	- - - intron="intron;ID=intron_FBgn0083949:18_FBgn0083949:17;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12079	1,721,602 – 1,721,652	+	11	56	81.08	-1.89	0.68	0.947273
8797	dm3.chr3R	1,721,602 – 1,721,652		12080	1,721,602 – 1,721,652	-	11	56	81.08	-1.76	0.57	0.747458
8798	dm3.chr3R	1,736,747 – 1,736,799	- - - intron="intron;ID=intron_FBgn0083949:19_FBgn0083949:18;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12081	1,736,747 – 1,736,799	-	6	59	67.45	-1.15	0.46	0.629581
8799	dm3.chr3R	1,739,912 – 1,740,010	- - - intron="intron;ID=intron_FBgn0083949:19_FBgn0083949:18;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12082	1,739,912 – 1,740,010	+	7	98	72.50	-2.28	0.37	0.791999
8800	dm3.chr3R	1,748,789 – 1,748,882	- - - intron="intron;ID=intron_FBgn0083949:19_FBgn0083949:18;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12083	1,748,789 – 1,748,882	+	3	97	85.07	-2.49	0.73	0.922890
8800	dm3.chr3R	1,748,789 – 1,748,882		12084	1,748,789 – 1,748,882	-	3	97	85.07	-2.37	0.76	0.923040
8801	dm3.chr3R	1,749,300 – 1,749,393	- - - intron="intron;ID=intron_FBgn0083949:19_FBgn0083949:18;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12085	1,749,300 – 1,749,393	+	10	118	77.96	-1.34	0.70	0.815580
8801	dm3.chr3R	1,749,300 – 1,749,393		12086	1,749,300 – 1,749,393	-	10	118	77.96	-1.36	0.66	0.748785
8802	dm3.chr3R	1,751,353 – 1,751,451	- - - intron="intron;ID=intron_FBgn0083949:19_FBgn0083949:18;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12087	1,751,353 – 1,751,451	+	9	103	82.64	-2.31	0.52	0.832012
8802	dm3.chr3R	1,751,353 – 1,751,451		12088	1,751,353 – 1,751,451	-	9	103	82.64	-1.98	0.52	0.577397
8803	dm3.chr3R	1,754,938 – 1,755,035	- - - intron="intron;ID=intron_FBgn0083949:19_FBgn0083949:18;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12089	1,754,938 – 1,755,035	-	11	108	86.10	-1.41	0.85	0.815029
8804	dm3.chr3R	1,755,952 – 1,756,028	- - - intron="intron;ID=intron_FBgn0083949:19_FBgn0083949:18;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12090	1,755,952 – 1,756,028	+	6	76	87.54	-1.74	0.78	0.766017
8805	dm3.chr3R	1,760,118 – 1,760,239	- - - intron="intron;ID=intron_FBgn0083949:19_FBgn0083949:18;Name=CG34113-in;Parent=FBtr0110806,FBtr0110807;parent_type=mRNA" - - - -	12091	1,760,118 – 1,760,239	-	8	144	65.30	-1.81	0.39	0.912512
8806	dm3.chr3R	1,789,870 – 1,789,961	- - - - - - - -	12092	1,789,870 – 1,789,961	-	6	91	79.69	-1.54	0.61	0.690149
8807	dm3.chr3R	1,790,132 – 1,790,240	- - - - - - - -	12093	1,790,132 – 1,790,240	+	4	118	75.73	-1.70	0.57	0.651346
8808	dm3.chr3R	1,790,373 – 1,790,466	- - - - - - - -	12094	1,790,373 – 1,790,466	-	12	113	74.89	-1.65	0.47	0.656691
8809	dm3.chr3R	1,791,834 – 1,791,931	- - - - - - - -	12095	1,791,834 – 1,791,931	+	12	120	88.37	-1.92	1.00	0.987294
8809	dm3.chr3R	1,791,834 – 1,791,931	- - - - - - - -	12096	1,791,834 – 1,791,931	-	12	120	88.37	-1.82	0.94	0.966151
8810	dm3.chr3R	1,799,059 – 1,799,121	- - - - - - - -	12097	1,799,059 – 1,799,121	+	4	62	91.13	-2.64	0.76	0.925651
8811	dm3.chr3R	1,815,262 – 1,815,352	- - - - - - - -	12098	1,815,262 – 1,815,352	+	5	102	91.41	-2.59	0.86	0.975326
8811	dm3.chr3R	1,815,262 – 1,815,352	- - - - - - - -	12099	1,815,262 – 1,815,352	-	5	102	91.41	-1.62	0.89	0.784832
8812	dm3.chr3R	1,817,031 – 1,817,122	- - - - - - - -	12100	1,817,031 – 1,817,122	-	12	119	78.40	-1.66	0.70	0.955506
8813	dm3.chr3R	1,822,689 – 1,822,782	- - - - - - - -	12101	1,822,689 – 1,822,782	-	11	116	72.18	-1.18	0.54	0.882109
8814	dm3.chr3R	1,829,394 – 1,829,455	- - CDS="CDS;ID=CDS_FBgn0003261:5_205;Name=Rm62-cds;Parent=FBtr0301947;parent_type=mRNA" - - - - -	12102	1,829,394 – 1,829,455	+	14	61	80.38	-1.18	0.60	0.627926
8815	dm3.chr3R	1,835,885 – 1,835,989	- - - - - - - -	12103	1,835,885 – 1,835,989	+	3	115	76.33	-1.74	0.63	0.586346
8815	dm3.chr3R	1,835,885 – 1,835,989	- - - - - - - -	12104	1,835,885 – 1,835,989	-	3	115	76.33	-2.68	0.60	0.965919
8816	dm3.chr3R	1,863,151 – 1,863,258	- - - - - - - -	12105	1,863,151 – 1,863,258	-	10	108	83.14	-1.44	0.64	0.599695
8817	dm3.chr3R	1,864,705 – 1,864,814	- - - - - - - -	12106	1,864,705 – 1,864,812	+	3	111	84.45	-0.70	1.01	0.750766
8817	dm3.chr3R	1,864,705 – 1,864,814	- - - - - - - -	12107	1,864,707 – 1,864,814	+	3	111	82.93	-0.71	1.01	0.774854
8818	dm3.chr3R	1,871,465 – 1,871,569	- - - - - - - -	12108	1,871,465 – 1,871,569	-	12	120	90.37	-1.44	0.83	0.573027
8819	dm3.chr3R	1,872,548 – 1,872,640	- - - - - - - -	12109	1,872,548 – 1,872,640	-	9	95	84.89	-1.43	0.83	0.858626
8820	dm3.chr3R	1,872,673 – 1,872,779	- - - - - - - -	12110	1,872,673 – 1,872,779	-	8	106	88.37	-2.43	0.63	0.778916
8821	dm3.chr3R	1,872,910 – 1,873,029	- - - - - - - -	12111	1,872,910 – 1,873,029	+	12	120	95.64	-2.29	0.76	0.660222
8822	dm3.chr3R	1,887,174 – 1,887,260	- - - - - - - -	12112	1,887,174 – 1,887,260	-	12	88	92.91	-1.29	0.93	0.754520
8823	dm3.chr3R	1,889,626 – 1,889,677	- - - - - - - -	12113	1,889,626 – 1,889,677	-	3	51	89.47	-0.73	0.98	0.550447
8824	dm3.chr3R	1,897,035 – 1,897,142	- - - - - - - -	12114	1,897,035 – 1,897,142	+	12	120	91.31	-0.63	0.98	0.522091
8825	dm3.chr3R	1,918,595 – 1,918,706	- - - intron="intron;ID=intron_FBgn0026077:3_FBgn0026077:1;Name=Gasp-in;Parent=FBtr0112922;parent_type=mRNA" - - - -	12115	1,918,595 – 1,918,700	+	4	112	74.03	-1.47	0.77	0.900144
8825	dm3.chr3R	1,918,595 – 1,918,706		12116	1,918,605 – 1,918,706	+	4	108	77.52	-1.31	0.74	0.647699
8826	dm3.chr3R	1,924,570 – 1,924,663	- - - intron="intron;ID=intron_FBgn0026077:6_FBgn0026077:5;Name=Gasp-in;Parent=FBtr0078619,FBtr0112922;parent_type=mRNA" - - - -	12117	1,924,570 – 1,924,663	+	3	120	77.81	-1.65	0.79	0.832460
8827	dm3.chr3R	1,941,789 – 1,941,884	- - - - - - - -	12118	1,941,789 – 1,941,884	+	9	102	80.51	-1.20	0.73	0.758399
8827	dm3.chr3R	1,941,789 – 1,941,884	- - - - - - - -	12119	1,941,789 – 1,941,884	-	9	102	80.51	-1.23	0.64	0.537167
8828	dm3.chr3R	1,942,041 – 1,942,104	- - - - - - - -	12120	1,942,041 – 1,942,104	+	3	63	82.22	-2.42	0.60	0.708174
8829	dm3.chr3R	1,944,355 – 1,944,451	- - - - - - - -	12121	1,944,355 – 1,944,451	-	5	106	76.40	-1.28	0.70	0.744609
8830	dm3.chr3R	1,950,201 – 1,950,306	- - - - - - - -	12122	1,950,201 – 1,950,306	+	5	120	71.09	-1.26	0.56	0.605272
8830	dm3.chr3R	1,950,201 – 1,950,306	- - - - - - - -	12123	1,950,201 – 1,950,306	-	5	120	71.09	-1.40	0.56	0.727079
8831	dm3.chr3R	1,951,262 – 1,951,357	- - - - - - - -	12124	1,951,262 – 1,951,357	-	10	119	80.66	-1.29	0.77	0.814150
8832	dm3.chr3R	1,954,106 – 1,954,207	- - - - - - - -	12125	1,954,106 – 1,954,207	+	10	112	76.43	-2.01	0.41	0.804872
8833	dm3.chr3R	1,961,077 – 1,961,175	- - - - - - - -	12126	1,961,077 – 1,961,175	-	7	115	65.32	-1.81	0.33	0.820368
8834	dm3.chr3R	1,964,436 – 1,964,554	- - - - - - - -	12127	1,964,436 – 1,964,554	-	5	120	79.29	-2.24	0.65	0.960022
8835	dm3.chr3R	1,977,891 – 1,977,983	- - - intron="intron;ID=intron_FBgn0051559:2_FBgn0051559:1;Name=CG31559-in;Parent=FBtr0078616;parent_type=mRNA" - - - -	12128	1,977,891 – 1,977,983	+	6	100	79.10	-1.60	0.60	0.627535
8836	dm3.chr3R	1,978,596 – 1,978,649	- - - intron="intron;ID=intron_FBgn0051559:2_FBgn0051559:1;Name=CG31559-in;Parent=FBtr0078616;parent_type=mRNA" - - - -	12129	1,978,596 – 1,978,649	+	6	53	97.11	-1.20	0.95	0.592932
8836	dm3.chr3R	1,978,596 – 1,978,649		12130	1,978,596 – 1,978,649	-	6	53	97.11	-1.21	0.99	0.796195
8837	dm3.chr3R	1,984,116 – 1,984,229	- - - - - - - -	12131	1,984,116 – 1,984,229	+	5	120	91.88	-2.06	0.80	0.765113
8838	dm3.chr3R	2,040,059 – 2,040,114	- - - - - - - -	12132	2,040,059 – 2,040,114	-	4	55	83.03	-0.63	1.03	0.812066
8839	dm3.chr3R	2,041,848 – 2,041,924	- - - - - - - -	12133	2,041,848 – 2,041,924	-	4	87	67.48	-1.86	0.54	0.938187
8840	dm3.chr3R	2,050,222 – 2,050,277	- - - - - - - -	12134	2,050,222 – 2,050,277	+	3	55	92.73	-1.91	1.00	0.978281
8841	dm3.chr3R	2,053,092 – 2,053,186	- - - - - - - -	12135	2,053,092 – 2,053,186	-	12	113	72.25	-0.91	0.58	0.752633
8842	dm3.chr3R	2,056,322 – 2,056,393	- - - - - - - -	12136	2,056,322 – 2,056,393	+	11	84	79.90	-1.51	0.62	0.663051
8843	dm3.chr3R	2,061,756 – 2,061,899	- - CDS="CDS;ID=CDS_CG1151:2_70;Name=Osi6-cds;Parent=FBtr0078596;parent_type=mRNA" - - - - -	12137	2,061,756 – 2,061,899	+	7	143	69.98	-1.28	0.57	0.958315
8844	dm3.chr3R	2,088,321 – 2,088,372	- - - - - - - -	12138	2,088,321 – 2,088,372	-	5	62	79.86	-1.25	0.96	0.931597
8845	dm3.chr3R	2,093,712 – 2,093,869	- - CDS="CDS;ID=CDS_CG15596:1_76;Name=Osi11-cds;Parent=FBtr0078614;parent_type=mRNA" - - - - -	12139	2,093,712 – 2,093,832	-	15	121	76.98	-1.92	0.46	0.920421
8845	dm3.chr3R	2,093,712 – 2,093,869		12140	2,093,752 – 2,093,869	-	15	120	76.21	-1.22	0.62	0.931199
8846	dm3.chr3R	2,099,224 – 2,099,355	- - - - - - - -	12141	2,099,224 – 2,099,355	-	7	146	62.59	-0.82	0.40	0.506080
8847	dm3.chr3R	2,103,053 – 2,103,147	- - - - - - - -	12142	2,103,053 – 2,103,147	-	6	100	65.95	-1.28	0.41	0.582653
8848	dm3.chr3R	2,105,143 – 2,105,245	- - - intron="intron;ID=intron_CG1154:1_CG1154:2;Name=Osi12-in;Parent=FBtr0078602;parent_type=mRNA" - - - -	12143	2,105,143 – 2,105,245	+	5	120	67.18	-1.40	0.40	0.547512
8849	dm3.chr3R	2,107,705 – 2,107,795	- - - - - - - -	12144	2,107,705 – 2,107,795	+	10	110	75.32	-1.33	0.58	0.719232
8850	dm3.chr3R	2,121,983 – 2,122,075	- - - - - - - -	12145	2,121,983 – 2,122,075	-	8	102	81.49	-2.52	0.57	0.944983
8851	dm3.chr3R	2,122,918 – 2,123,022	- - - - - - - -	12146	2,122,918 – 2,123,022	+	5	104	74.80	-1.42	0.64	0.795685
8852	dm3.chr3R	2,132,362 – 2,132,457	- - - - - - - -	12147	2,132,362 – 2,132,457	+	3	96	91.67	-4.00	0.86	0.998025
8852	dm3.chr3R	2,132,362 – 2,132,457	- - - - - - - -	12148	2,132,362 – 2,132,457	-	3	96	91.67	-2.39	0.78	0.835665
8853	dm3.chr3R	2,132,754 – 2,132,845	- - - - - - - -	12149	2,132,754 – 2,132,845	+	6	96	58.39	-2.24	0.35	0.995076
8854	dm3.chr3R	2,137,178 – 2,137,233	- - - - - - - -	12150	2,137,178 – 2,137,233	+	3	55	87.88	-3.19	0.71	0.978798
8854	dm3.chr3R	2,137,178 – 2,137,233	- - - - - - - -	12151	2,137,178 – 2,137,233	-	3	55	87.88	-2.58	0.79	0.952536
8855	dm3.chr3R	2,138,497 – 2,138,608	- - - - - - - -	12152	2,138,497 – 2,138,608	+	12	116	76.89	-2.61	0.45	0.983003
8855	dm3.chr3R	2,138,497 – 2,138,608	- - - - - - - -	12153	2,138,497 – 2,138,608	-	12	116	76.89	-1.98	0.42	0.775423
8856	dm3.chr3R	2,150,123 – 2,150,175	- - - intron="intron;ID=intron_CG15598:7_CG15598:8;Name=Osi17-in;Parent=FBtr0078610;parent_type=mRNA" - - - -	12154	2,150,123 – 2,150,175	+	4	58	76.90	-1.17	0.80	0.776824
8856	dm3.chr3R	2,150,123 – 2,150,175		12155	2,150,123 – 2,150,175	-	4	58	76.90	-2.19	0.69	0.971849
8857	dm3.chr3R	2,185,082 – 2,185,177	- - CDS="CDS;ID=CDS_FBgn0014001:11_150;Name=Pak-cds;Parent=FBtr0114607;parent_type=mRNA" - - - - -	12156	2,185,082 – 2,185,177	+	14	102	75.30	-0.94	0.56	0.665255
8858	dm3.chr3R	2,233,726 – 2,233,827	- - - intron="intron;ID=intron_FBgn0261972:3_FBgn0261972:4;Name=gpp-in;Parent=FBtr0303787,FBtr0303789,FBtr0303790;parent_type=mRNA" - - - -	12157	2,233,726 – 2,233,827	-	5	112	85.08	-2.45	0.55	0.630679
8859	dm3.chr3R	2,239,062 – 2,239,194	- - - intron="intron;ID=intron_FBgn0261972:3_FBgn0261972:4;Name=gpp-in;Parent=FBtr0303787,FBtr0303789,FBtr0303790;parent_type=mRNA" - - - -	12158	2,239,062 – 2,239,166	-	5	106	76.05	-1.45	0.59	0.658355
8859	dm3.chr3R	2,239,062 – 2,239,194		12159	2,239,097 – 2,239,194	-	4	97	97.77	-2.06	0.92	0.901557
8860	dm3.chr3R	2,245,102 – 2,245,183	- - - intron="intron;ID=intron_FBgn0261972:3_FBgn0261972:4;Name=gpp-in;Parent=FBtr0303787,FBtr0303789,FBtr0303790;parent_type=mRNA" - - - -	12160	2,245,102 – 2,245,183	+	5	85	91.15	-2.77	0.71	0.912481
8861	dm3.chr3R	2,256,411 – 2,256,505	- - - intron="intron;ID=intron_FBgn0261972:3_FBgn0261972:4;Name=gpp-in;Parent=FBtr0303787,FBtr0303789,FBtr0303790;parent_type=mRNA" - - - -	12161	2,256,411 – 2,256,505	+	6	100	74.17	-1.76	0.47	0.669950
8862	dm3.chr3R	2,257,753 – 2,257,878	- - - intron="intron;ID=intron_FBgn0261972:3_FBgn0261972:4;Name=gpp-in;Parent=FBtr0303787,FBtr0303789,FBtr0303790;parent_type=mRNA" - - - -	12162	2,257,753 – 2,257,878	-	6	128	71.48	-1.42	0.62	0.961216
8863	dm3.chr3R	2,264,511 – 2,264,609	- - - - - - - -	12163	2,264,511 – 2,264,609	-	12	113	64.92	-0.91	0.43	0.789970
8864	dm3.chr3R	2,265,854 – 2,265,946	- - CDS="CDS;ID=CDS_FBgn0261972:7_230;Name=gpp-cds;Parent=FBtr0303788,FBtr0303789,FBtr0303790;parent_type=mRNA" - - - - -	12164	2,265,854 – 2,265,946	+	11	111	63.35	-0.66	0.49	0.847033
8865	dm3.chr3R	2,270,222 – 2,270,319	- - - intron="intron;ID=intron_FBgn0261972:9_FBgn0261972:11;Name=gpp-in;Parent=FBtr0303790;parent_type=mRNA" - - - -	12165	2,270,222 – 2,270,319	-	5	97	85.57	-1.98	0.80	0.918606
8866	dm3.chr3R	2,290,150 – 2,290,264	- - - - - - - -	12166	2,290,150 – 2,290,264	+	3	114	99.42	-0.88	1.00	0.556962
8867	dm3.chr3R	2,310,440 – 2,310,530	- - - intron="intron;ID=intron_CG15186:1_CG15186:2;Name=CG15186-in;Parent=FBtr0081672,FBtr0081674;parent_type=mRNA" - - - -	12167	2,310,440 – 2,310,530	-	13	106	68.87	-0.68	0.60	0.905957
8868	dm3.chr3R	2,318,871 – 2,318,985	- - CDS="CDS;ID=CDS_CG15186:6_90;Name=CG15186-cds;Parent=FBtr0081674;parent_type=mRNA" - - - - -	12168	2,318,871 – 2,318,985	-	9	117	72.66	-2.04	0.30	0.536323
8869	dm3.chr3R	2,319,737 – 2,319,869	- - CDS="CDS;ID=CDS_CG15186:7_37;Name=CG15186-cds;Parent=FBtr0081672,FBtr0081673;parent_type=mRNA" - - - - -	12169	2,319,737 – 2,319,869	-	13	133	77.46	-2.72	0.27	0.756454
8870	dm3.chr3R	2,328,279 – 2,328,376	- - - - - - - -	12170	2,328,279 – 2,328,376	+	6	116	86.71	-2.08	0.78	0.892005
8870	dm3.chr3R	2,328,279 – 2,328,376	- - - - - - - -	12171	2,328,279 – 2,328,376	-	6	116	86.71	-1.53	0.81	0.654674
8871	dm3.chr3R	2,330,933 – 2,331,025	- - - - - - - -	12172	2,330,933 – 2,331,025	+	6	103	77.62	-2.21	0.46	0.748936
8872	dm3.chr3R	2,334,370 – 2,334,466	- - - - - - - -	12173	2,334,370 – 2,334,466	-	12	117	81.95	-1.80	0.62	0.741268
8872	dm3.chr3R	2,334,370 – 2,334,466	- - - - - - - -	12174	2,334,373 – 2,334,466	-	12	117	82.68	-1.68	0.65	0.645601
8873	dm3.chr3R	2,336,059 – 2,336,164	- - - - - - - -	12175	2,336,059 – 2,336,164	+	3	112	60.60	-1.10	0.51	0.583321
8874	dm3.chr3R	2,336,211 – 2,336,308	- - - - - - - -	12176	2,336,211 – 2,336,308	+	4	99	63.28	-1.41	0.40	0.637089
8874	dm3.chr3R	2,336,211 – 2,336,308	- - - - - - - -	12177	2,336,211 – 2,336,308	-	4	99	63.28	-1.41	0.38	0.531272
8875	dm3.chr3R	2,344,572 – 2,344,677	- - - - - - - -	12178	2,344,572 – 2,344,677	+	12	113	65.49	-1.68	0.33	0.884806
8876	dm3.chr3R	2,355,477 – 2,355,574	- - - - - - - -	12179	2,355,477 – 2,355,574	-	6	97	80.41	-1.74	0.60	0.680536
8877	dm3.chr3R	2,356,638 – 2,356,753	- - - - - - - -	12180	2,356,638 – 2,356,753	+	4	115	87.97	-3.03	0.76	0.985700
8878	dm3.chr3R	2,362,261 – 2,362,317	- - - intron="intron;ID=intron_CG33202:5_CG33202:6;Name=dpr11-in;Parent=FBtr0081704;parent_type=mRNA" - - - -	12181	2,362,261 – 2,362,317	-	4	58	79.46	-2.37	0.61	0.923403
8879	dm3.chr3R	2,368,074 – 2,368,171	- - - intron="intron;ID=intron_CG33202:4_CG33202:5;Name=dpr11-in;Parent=FBtr0081704;parent_type=mRNA" - - - -	12182	2,368,074 – 2,368,171	-	6	118	77.74	-1.73	0.55	0.553629
8880	dm3.chr3R	2,372,670 – 2,372,747	- - - intron="intron;ID=intron_CG33202:2_CG33202:3;Name=dpr11-in;Parent=FBtr0081704;parent_type=mRNA" - - - -	12183	2,372,670 – 2,372,747	+	11	95	71.47	-1.99	0.48	0.974861
8880	dm3.chr3R	2,372,670 – 2,372,747		12184	2,372,670 – 2,372,747	-	11	95	71.47	-1.40	0.45	0.714185
8881	dm3.chr3R	2,373,327 – 2,373,426	- - - intron="intron;ID=intron_CG33202:2_CG33202:3;Name=dpr11-in;Parent=FBtr0081704;parent_type=mRNA" - - - -	12185	2,373,327 – 2,373,426	-	12	116	73.71	-1.90	0.36	0.518854
8882	dm3.chr3R	2,378,997 – 2,379,097	- - - - - - - -	12186	2,378,997 – 2,379,097	+	3	100	96.00	-1.80	0.87	0.638981
8883	dm3.chr3R	2,382,175 – 2,382,267	- - - - - - - -	12187	2,382,175 – 2,382,267	+	7	112	79.54	-1.93	0.61	0.857370
8884	dm3.chr3R	2,385,948 – 2,386,072	- - - - - - - -	12188	2,385,948 – 2,386,072	+	6	130	72.24	-1.27	0.47	0.537117
8885	dm3.chr3R	2,420,417 – 2,420,549	- - - - - - - -	12189	2,420,417 – 2,420,513	+	10	119	64.40	-1.28	0.52	0.979617
				12190	2,420,417 – 2,420,513	-	10	119	64.40	-3.44	0.71	0.999940
				12191	2,420,433 – 2,420,549	-	12	123	79.18	-2.98	0.49	0.993616
8886	dm3.chr3R	2,421,403 – 2,421,468	- - - - - - - -	12192	2,421,403 – 2,421,468	+	8	70	83.16	-1.59	0.72	0.723844
8887	dm3.chr3R	2,425,404 – 2,425,516	- - - - - - - -	12193	2,425,404 – 2,425,508	+	7	110	66.49	-1.98	0.25	0.585754
				12194	2,425,412 – 2,425,516	+	6	110	72.64	-1.79	0.54	0.952477
				12195	2,425,412 – 2,425,516	-	6	110	72.64	-1.94	0.55	0.975450
8888	dm3.chr3R	2,430,725 – 2,430,784	- - - - - - - -	12196	2,430,725 – 2,430,784	+	7	60	69.04	-1.46	0.38	0.571132
8889	dm3.chr3R	2,432,889 – 2,432,939	- - - - - - - -	12197	2,432,889 – 2,432,939	-	3	50	94.67	-2.52	0.80	0.862711
8890	dm3.chr3R	2,437,710 – 2,437,859	- - - - - - - -	12198	2,437,710 – 2,437,824	-	7	115	76.42	-1.56	0.49	0.608790
8890	dm3.chr3R	2,437,710 – 2,437,859	- - - - - - - -	12199	2,437,747 – 2,437,859	-	7	113	73.39	-2.00	0.45	0.921091
8891	dm3.chr3R	2,440,332 – 2,440,428	- - - - - - - -	12200	2,440,332 – 2,440,428	-	3	100	87.50	-3.58	0.79	0.996199
8892	dm3.chr3R	2,441,198 – 2,441,297	- - - - - - - -	12201	2,441,198 – 2,441,297	-	6	103	82.01	-2.18	0.58	0.827259
8893	dm3.chr3R	2,442,959 – 2,443,078	- - - - - - - -	12202	2,442,959 – 2,443,060	-	6	101	81.95	-1.76	0.63	0.696739
8893	dm3.chr3R	2,442,959 – 2,443,078	- - - - - - - -	12203	2,442,977 – 2,443,078	-	6	105	75.08	-1.82	0.59	0.922799
8894	dm3.chr3R	2,469,504 – 2,469,575	- - - intron="intron;ID=intron_FBgn0026565:2_FBgn0026565:1;Name=CG1315-in;Parent=FBtr0081699;parent_type=mRNA" - - - -	12204	2,469,504 – 2,469,575	-	5	74	69.78	-1.56	0.52	0.898049
8895	dm3.chr3R	2,469,912 – 2,470,016	- - CDS="CDS;ID=CDS_FBgn0026565:3_230;Name=CG1315-cds;Parent=FBtr0081699;parent_type=mRNA" - - - - -	12205	2,469,912 – 2,470,016	-	13	121	62.47	-1.51	0.38	0.902386
8896	dm3.chr3R	2,489,053 – 2,489,119	- - - intron="intron;ID=intron_CG1264:1_CG1264:2;Name=lab-in;Parent=FBtr0081696;parent_type=mRNA" - - - -	12206	2,489,053 – 2,489,119	+	11	77	72.44	-1.34	0.53	0.775516
8897	dm3.chr3R	2,493,189 – 2,493,302	- - - intron="intron;ID=intron_CG1264:1_CG1264:2;Name=lab-in;Parent=FBtr0081696;parent_type=mRNA" - - - -	12207	2,493,189 – 2,493,281	+	6	93	93.28	-4.05	0.79	0.997514
8897	dm3.chr3R	2,493,189 – 2,493,302		12208	2,493,203 – 2,493,302	+	6	100	91.87	-2.61	0.80	0.955971
8898	dm3.chr3R	2,517,453 – 2,517,546	- - - - - - - -	12209	2,517,453 – 2,517,546	-	12	95	79.94	-1.38	0.58	0.615943
8899	dm3.chr3R	2,534,705 – 2,534,811	- - - intron="intron;ID=intron_CG31481:6_CG31481:7;Name=pb-in;Parent=FBtr0089276,FBtr0089277,FBtr0089278,FBtr0089279;parent_type=mRNA" - - - -	12210	2,534,705 – 2,534,811	+	6	115	62.85	-0.76	0.43	0.524756
8899	dm3.chr3R	2,534,705 – 2,534,811		12211	2,534,705 – 2,534,811	-	6	115	62.85	-1.27	0.35	0.579771
8900	dm3.chr3R	2,584,296 – 2,584,404	- - - intron="intron;ID=intron_FBgn0000166:6_FBgn0000166:5;Name=bcd-in;Parent=FBtr0081666,FBtr0081667;parent_type=mRNA" - - - -	12212	2,584,296 – 2,584,404	+	5	110	66.95	-1.21	0.68	0.968233
8900	dm3.chr3R	2,584,296 – 2,584,404		12213	2,584,296 – 2,584,404	-	5	110	66.95	-0.84	0.59	0.757998
8901	dm3.chr3R	2,594,064 – 2,594,212	FBnoncoding="ncRNA;ID=FBtr0303008;Name=CR42721-RA;Parent=FBgn0261638;Dbxref=FlyBase_Annotation_IDs:CR42721-RA;score_text=Weakly" - - - - - - -	12214	2,594,064 – 2,594,172	+	6	112	63.67	-1.76	0.40	0.955405
				12215	2,594,064 – 2,594,172	-	6	112	63.67	-1.15	0.37	0.506476
				12216	2,594,104 – 2,594,212	+	6	110	67.43	-1.80	0.56	0.992641
				12217	2,594,104 – 2,594,212	-	6	110	67.43	-1.26	0.64	0.980313
8902	dm3.chr3R	2,602,056 – 2,602,166	FBnoncoding="pre_miRNA;ID=FBtr0304176;Name=mir-993-RM;Parent=FBgn0262174;Alias=CR42881-RM;Dbxref=FlyBase_Annotation_IDs:CR42881-RM,miRBase:MI0005854" - - - - - - "mirBase_v16=dme-mir-993\|2.0e-58"	12218	2,602,056 – 2,602,166	+	13	112	83.07	-4.42	0.71	0.999690
8902	dm3.chr3R	2,602,056 – 2,602,166		12219	2,602,056 – 2,602,166	-	13	112	83.07	-1.96	0.76	0.962993
8903	dm3.chr3R	2,623,996 – 2,624,086	- - - intron="intron;ID=intron_CG2189:3_CG2189:4;Name=Dfd-in;Parent=FBtr0081621;parent_type=mRNA" - - - -	12220	2,623,996 – 2,624,086	+	12	118	82.31	-1.23	0.84	0.816872
8904	dm3.chr3R	2,630,810 – 2,630,863	- - - - - - - -	12221	2,630,810 – 2,630,863	-	8	61	77.86	-2.35	0.40	0.796295
8905	dm3.chr3R	2,635,223 – 2,635,327	FBnoncoding="pre_miRNA;ID=FBtr0304380;Name=mir-10-RM;Parent=FBgn0262424;Alias=CR42977-RM;Dbxref=FlyBase_Annotation_IDs:CR42977-RM,miRBase:MI0000130" - - - "Rfam_10.0=RF00104;mir-10;AAPT01019387.1/166139-166214\|1.2e-31" "Noncode_2.0=n178679_u177777_NW_045723_miRNA_Anopheles\|5.5e-09" "unique_Noncode_2.0=u177777_miRNA_Anopheles\|4.8e-09" "mirBase_v16=dsi-mir-10\|9.4e-39"	12222	2,635,223 – 2,635,327	+	15	108	78.71	-3.09	0.76	0.999378
8905	dm3.chr3R	2,635,223 – 2,635,327		12223	2,635,223 – 2,635,327	-	15	108	78.71	-4.55	0.91	0.999097
8906	dm3.chr3R	2,640,527 – 2,640,624	- - - - - - - -	12224	2,640,527 – 2,640,624	-	4	118	56.39	-1.70	0.41	0.977620
8907	dm3.chr3R	2,644,964 – 2,645,074	- - - - - - - -	12225	2,644,964 – 2,645,064	+	8	108	63.92	-1.76	0.48	0.993401
				12226	2,644,964 – 2,645,064	-	8	108	63.92	-1.18	0.40	0.784132
				12227	2,644,967 – 2,645,074	+	10	112	60.48	-1.76	0.21	0.500000
				12228	2,644,967 – 2,645,074	-	10	112	60.48	-1.10	0.33	0.612196
8908	dm3.chr3R	2,645,933 – 2,646,093	FBnoncoding="ncRNA;ID=FBtr0302398;Name=CR42652-RA;Parent=FBgn0261504;Dbxref=FlyBase_Annotation_IDs:CR42652-RA;score_text=Weakly" - - - "Rfam_10.0=RF00017;SRP_euk_arch;AAPQ01006440.1/464918-465212\|2.4e-86" "Noncode_2.0=n5338_u4689_X00952_SRP_7SL\|2.4e-86" "unique_Noncode_2.0=u4689_SRP_7SL\|2.1e-86" -	12229	2,645,933 – 2,646,053	-	13	120	95.87	-2.52	0.92	0.981552
8908	dm3.chr3R	2,645,933 – 2,646,093		12230	2,645,973 – 2,646,093	+	13	120	92.88	-1.74	0.80	0.570992
8909	dm3.chr3R	2,646,789 – 2,646,880	FBnoncoding="tRNA;ID=FBtr0081661;Name=tRNA:K5:84ABc-RA;Parent=FBgn0026163;Dbxref=FlyBase_Annotation_IDs:CR31487-RA;score_text=Weakly" tRNAscann="Lys_chr3R_trna78" - - "Rfam_10.0=RF00005;tRNA;AAJJ01001092.1/1840-1912\|6.1e-30" "Noncode_2.0=n103595_u102693_DQ614086_piRNA_Norway\|2.9e-07" "unique_Noncode_2.0=u102692_piRNA_Norway\|2.5e-07" -	12231	2,646,789 – 2,646,880	+	13	95	73.74	-2.65	0.90	0.998708
8909	dm3.chr3R	2,646,789 – 2,646,880		12232	2,646,789 – 2,646,880	-	13	95	73.74	-2.61	0.88	0.998849
8910	dm3.chr3R	2,647,500 – 2,647,590	FBnoncoding="tRNA;ID=FBtr0081623;Name=tRNA:K5:84ABb-RA;Parent=FBgn0026164;Dbxref=FlyBase_Annotation_IDs:CR31489-RA;score_text=Weakly" tRNAscann="Lys_chr3R_trna3" - - "Rfam_10.0=RF00005;tRNA;AAJJ01001092.1/1840-1912\|6.0e-30" "Noncode_2.0=n103595_u102693_DQ614086_piRNA_Norway\|2.8e-07" "unique_Noncode_2.0=u102692_piRNA_Norway\|2.5e-07" -	12233	2,647,500 – 2,647,590	+	11	98	75.47	-2.54	0.86	0.998759
8910	dm3.chr3R	2,647,500 – 2,647,590		12234	2,647,500 – 2,647,590	-	11	98	75.47	-3.02	0.84	0.999411
8911	dm3.chr3R	2,648,318 – 2,648,438	FBnoncoding="ncRNA;ID=FBtr0081624;Name=7SLRNA-RA;Parent=FBgn0000003;Dbxref=FlyBase_Annotation_IDs:CR32864-RA,REFSEQ:NR_001992;score_text=Weakly" - - - "Rfam_10.0=RF00017;SRP_euk_arch;AAPQ01006440.1/464918-465212\|1.3e-62" "Noncode_2.0=n5338_u4689_X00952_SRP_7SL\|1.3e-62" "unique_Noncode_2.0=u4689_SRP_7SL\|1.1e-62" -	12235	2,648,318 – 2,648,438	+	13	120	95.99	-2.50	0.89	0.968541
8912	dm3.chr3R	2,648,680 – 2,648,766	FBnoncoding="tRNA;ID=FBtr0081660;Name=tRNA:K5:84ABa-RA;Parent=FBgn0011904;Dbxref=FlyBase_Annotation_IDs:CR31486-RA;score_text=Weakly" tRNAscann="Lys_chr3R_trna77" - - "Rfam_10.0=RF00005;tRNA;AAJJ01001092.1/1840-1912\|5.7e-30" "Noncode_2.0=n103595_u102693_DQ614086_piRNA_Norway\|2.7e-07" "unique_Noncode_2.0=u102692_piRNA_Norway\|2.3e-07" -	12236	2,648,680 – 2,648,766	+	14	94	75.88	-3.27	0.95	0.998602
8912	dm3.chr3R	2,648,680 – 2,648,766		12237	2,648,680 – 2,648,766	-	14	94	75.88	-3.00	0.85	0.999295
8913	dm3.chr3R	2,650,249 – 2,650,305	- - - - - - - -	12238	2,650,249 – 2,650,305	-	7	58	63.83	-0.88	0.48	0.829462
8914	dm3.chr3R	2,656,800 – 2,656,919	- - - intron="intron;ID=intron_FBgn0003339:2_FBgn0003339:1;Name=Scr-in;Parent=FBtr0081657,FBtr0081658;parent_type=mRNA" - - - -	12239	2,656,800 – 2,656,897	+	12	127	80.85	-1.33	0.69	0.635147
				12240	2,656,800 – 2,656,897	-	12	127	80.85	-1.58	0.65	0.729020
				12241	2,656,829 – 2,656,919	+	12	110	79.41	-3.14	0.41	0.984313
				12242	2,656,829 – 2,656,919	-	12	110	79.41	-2.14	0.39	0.534891
8915	dm3.chr3R	2,658,187 – 2,658,277	- - - intron="intron;ID=intron_FBgn0003339:2_FBgn0003339:1;Name=Scr-in;Parent=FBtr0081657,FBtr0081658;parent_type=mRNA" - - - -	12243	2,658,187 – 2,658,277	+	9	115	86.25	-2.67	0.84	0.991209
8916	dm3.chr3R	2,658,995 – 2,659,073	- - - intron="intron;ID=intron_FBgn0003339:2_FBgn0003339:1;Name=Scr-in;Parent=FBtr0081657,FBtr0081658;parent_type=mRNA" - - - -	12244	2,658,995 – 2,659,073	+	6	78	88.03	-1.84	0.78	0.806912
8917	dm3.chr3R	2,668,191 – 2,668,302	- - - intron="intron;ID=intron_FBgn0003339:3_FBgn0003339:2;Name=Scr-in;Parent=FBtr0081657;parent_type=mRNA" - - - -	12245	2,668,191 – 2,668,302	-	6	120	66.09	-1.40	0.37	0.512384
8918	dm3.chr3R	2,674,137 – 2,674,290	- - - - - - - -	12246	2,674,137 – 2,674,290	+	8	177	76.46	-2.17	0.55	0.976843
8918	dm3.chr3R	2,674,137 – 2,674,290	- - - - - - - -	12247	2,674,137 – 2,674,290	-	8	177	76.46	-1.33	0.64	0.867654
8919	dm3.chr3R	2,674,531 – 2,674,646	- - - - - - - -	12248	2,674,531 – 2,674,646	+	9	117	61.35	-1.97	0.28	0.944920
8920	dm3.chr3R	2,683,486 – 2,683,600	- - - - - - - -	12249	2,683,486 – 2,683,576	+	12	111	77.45	-2.21	0.52	0.952089
8920	dm3.chr3R	2,683,486 – 2,683,600	- - - - - - - -	12250	2,683,509 – 2,683,600	+	12	112	77.92	-2.73	0.50	0.981933
8921	dm3.chr3R	2,687,256 – 2,687,365	- - - - - - - -	12251	2,687,256 – 2,687,365	-	6	111	75.57	-1.02	0.63	0.510472
8922	dm3.chr3R	2,687,637 – 2,687,743	- - - - - - - -	12252	2,687,637 – 2,687,743	-	10	108	80.25	-1.92	0.56	0.886239
8923	dm3.chr3R	2,693,865 – 2,693,958	- - - - - - - -	12253	2,693,865 – 2,693,958	+	12	113	80.05	-1.79	0.57	0.727020
8924	dm3.chr3R	2,708,926 – 2,709,030	- - - - - - - -	12254	2,708,926 – 2,709,030	-	10	119	61.89	-1.39	0.31	0.705536
8925	dm3.chr3R	2,715,239 – 2,715,343	- - - - - - - -	12255	2,715,239 – 2,715,343	+	5	104	94.04	-1.66	0.87	0.657084
8926	dm3.chr3R	2,715,409 – 2,715,502	- - - - - - - -	12256	2,715,409 – 2,715,502	-	11	115	77.70	-2.75	0.51	0.991843
8927	dm3.chr3R	2,717,882 – 2,717,976	- - - - - - - -	12257	2,717,882 – 2,717,976	+	6	94	97.52	-2.15	0.91	0.917188
8927	dm3.chr3R	2,717,882 – 2,717,976	- - - - - - - -	12258	2,717,882 – 2,717,976	-	6	94	97.52	-1.64	0.94	0.818105
8928	dm3.chr3R	2,732,817 – 2,732,923	- - - - - - - -	12259	2,732,817 – 2,732,923	-	12	120	92.39	-1.34	0.90	0.660494
8929	dm3.chr3R	2,736,041 – 2,736,138	- - - - - - - -	12260	2,736,041 – 2,736,138	+	5	97	88.87	-2.47	0.74	0.921541
8929	dm3.chr3R	2,736,041 – 2,736,138	- - - - - - - -	12261	2,736,041 – 2,736,138	-	5	97	88.87	-2.77	0.72	0.958148
8930	dm3.chr3R	2,736,769 – 2,736,883	- - - intron="intron;ID=intron_CG1028:1_CG1028:2;Name=Antp-in;Parent=FBtr0081646,FBtr0081648,FBtr0081652,FBtr0081653,FBtr0081655,FBtr0081656;parent_type=mRNA" - - - -	12262	2,736,769 – 2,736,883	+	12	120	87.44	-2.52	0.61	0.884366
8931	dm3.chr3R	2,743,502 – 2,743,596	- - - intron="intron;ID=intron_CG1028:1_CG1028:2;Name=Antp-in;Parent=FBtr0081646,FBtr0081648,FBtr0081652,FBtr0081653,FBtr0081655,FBtr0081656;parent_type=mRNA" - - - -	12263	2,743,502 – 2,743,596	+	11	106	91.61	-1.95	0.75	0.606615
8932	dm3.chr3R	2,750,721 – 2,750,814	- - - intron="intron;ID=intron_CG1028:1_CG1028:2;Name=Antp-in;Parent=FBtr0081646,FBtr0081648,FBtr0081652,FBtr0081653,FBtr0081655,FBtr0081656;parent_type=mRNA" - - - -	12264	2,750,721 – 2,750,814	+	12	120	64.53	-1.57	0.35	0.748781
8933	dm3.chr3R	2,762,689 – 2,762,765	- - - - - - - -	12265	2,762,689 – 2,762,765	+	4	83	63.66	-1.21	0.55	0.875710
8934	dm3.chr3R	2,764,801 – 2,764,902	- - - - - - - -	12266	2,764,801 – 2,764,902	+	12	121	84.17	-1.79	0.61	0.530211
8935	dm3.chr3R	2,782,196 – 2,782,295	- - - - - - - -	12267	2,782,196 – 2,782,295	+	10	101	76.72	-2.43	0.30	0.638357
8936	dm3.chr3R	2,785,178 – 2,785,274	- - - - - - - -	12268	2,785,178 – 2,785,274	+	9	103	77.54	-1.56	0.50	0.555759
8937	dm3.chr3R	2,785,784 – 2,785,851	- - - - - - - -	12269	2,785,784 – 2,785,851	+	7	75	74.79	-0.76	0.70	0.598004
8938	dm3.chr3R	2,787,507 – 2,787,606	- - - - - - - -	12270	2,787,507 – 2,787,606	+	6	113	69.23	-1.83	0.48	0.946889
8939	dm3.chr3R	2,788,718 – 2,788,781	- - - - - - - -	12271	2,788,718 – 2,788,781	+	4	63	78.31	-2.78	0.47	0.923011
8940	dm3.chr3R	2,791,431 – 2,791,493	- - - - - - - -	12272	2,791,431 – 2,791,493	+	8	62	84.48	-2.14	0.91	0.987843
8941	dm3.chr3R	2,804,490 – 2,804,568	- - - intron="intron;ID=intron_CG1028:7_CG1028:8;Name=Antp-in;Parent=FBtr0081647,FBtr0081649,FBtr0081650,FBtr0081651,FBtr0081654;parent_type=mRNA" - - - -	12273	2,804,490 – 2,804,568	-	8	97	71.84	-0.22	0.88	0.628330
8942	dm3.chr3R	2,813,972 – 2,814,062	- - - intron="intron;ID=intron_CG1028:7_CG1028:8;Name=Antp-in;Parent=FBtr0081647,FBtr0081649,FBtr0081650,FBtr0081651,FBtr0081654;parent_type=mRNA" - - - -	12274	2,813,972 – 2,814,062	+	5	90	98.44	-1.99	0.97	0.948627
8943	dm3.chr3R	2,817,267 – 2,817,362	- - - intron="intron;ID=intron_CG1028:7_CG1028:8;Name=Antp-in;Parent=FBtr0081647,FBtr0081649,FBtr0081650,FBtr0081651,FBtr0081654;parent_type=mRNA" - - - -	12275	2,817,267 – 2,817,362	+	7	96	55.94	-0.80	0.34	0.636916
8944	dm3.chr3R	2,835,294 – 2,835,426	- - - - - - - -	12276	2,835,294 – 2,835,390	+	3	102	92.67	-1.16	0.96	0.701336
8944	dm3.chr3R	2,835,294 – 2,835,426	- - - - - - - -	12277	2,835,318 – 2,835,426	+	5	108	96.85	-1.44	0.90	0.506692
8945	dm3.chr3R	2,837,111 – 2,837,216	- - - - - - - -	12278	2,837,111 – 2,837,214	+	11	109	77.96	-2.25	0.47	0.940068
				12279	2,837,111 – 2,837,214	-	11	109	77.96	-2.20	0.52	0.965163
				12280	2,837,111 – 2,837,216	+	10	109	78.82	-2.24	0.47	0.912158
				12281	2,837,111 – 2,837,216	-	10	109	78.82	-2.02	0.54	0.932277
8946	dm3.chr3R	2,850,218 – 2,850,322	- - - - - - - -	12282	2,850,218 – 2,850,322	+	12	112	90.11	-1.48	0.81	0.549492
8946	dm3.chr3R	2,850,218 – 2,850,322	- - - - - - - -	12283	2,850,218 – 2,850,322	-	12	112	90.11	-1.91	0.78	0.778464
8947	dm3.chr3R	2,853,169 – 2,853,278	- - - - - - - -	12284	2,853,169 – 2,853,278	+	5	109	79.74	-2.55	0.60	0.971911
8948	dm3.chr3R	2,862,001 – 2,862,097	- - - - - - - -	12285	2,862,001 – 2,862,097	+	7	116	62.60	-1.93	0.54	0.997948
8948	dm3.chr3R	2,862,001 – 2,862,097	- - - - - - - -	12286	2,862,001 – 2,862,097	-	7	116	62.60	-1.12	0.47	0.905001
8949	dm3.chr3R	2,876,745 – 2,876,833	- - - - - - - -	12287	2,876,745 – 2,876,833	-	4	103	67.78	-1.02	0.63	0.725884
8950	dm3.chr3R	2,882,253 – 2,882,360	- - CDS="CDS;ID=CDS_FBgn0026563:2_162;Name=CG1979-cds;Parent=FBtr0081628;parent_type=mRNA" - - - - -	12288	2,882,253 – 2,882,360	-	5	116	75.25	-2.04	0.51	0.867246
8951	dm3.chr3R	2,890,756 – 2,890,847	- - CDS="CDS;ID=CDS_FBgn0037465:2_46;Name=CG1105-cds;Parent=FBtr0081645;parent_type=mRNA" - - - - -	12289	2,890,756 – 2,890,847	+	13	101	59.60	-1.84	0.18	0.637441
8951	dm3.chr3R	2,890,756 – 2,890,847		12290	2,890,756 – 2,890,847	-	13	101	59.60	-1.47	0.23	0.582620
8952	dm3.chr3R	2,900,459 – 2,900,583	- - - - - - - -	12291	2,900,459 – 2,900,583	-	5	125	78.49	-1.30	0.65	0.525019
8953	dm3.chr3R	2,912,324 – 2,912,418	- - - - - - - -	12292	2,912,324 – 2,912,418	+	12	120	69.23	-0.59	0.66	0.734907
8954	dm3.chr3R	2,921,502 – 2,921,595	- - CDS="CDS;ID=CDS_FBgn0037471:3_105;Name=Alh-cds;Parent=FBtr0300494;parent_type=mRNA" intron="intron;ID=intron_FBgn0037471:4_FBgn0037471:2;Name=Alh-in;Parent=FBtr0113199;parent_type=mRNA" - - - -	12293	2,921,502 – 2,921,595	+	12	109	71.07	-0.92	0.52	0.758459
8955	dm3.chr3R	2,929,071 – 2,929,143	- - - intron="intron;ID=intron_FBgn0037471:16_FBgn0037471:15;Name=Alh-in;Parent=FBtr0081614,FBtr0081615,FBtr0113199,FBtr0113200,FBtr0300494,FBtr0300495;parent_type=mRNA" - - - -	12294	2,929,071 – 2,929,143	-	7	80	69.30	-1.89	0.41	0.898382
8956	dm3.chr3R	2,956,655 – 2,956,744	FBnoncoding="tRNA;ID=FBtr0081610;Name=tRNA:CR31491-RA;Parent=FBgn0051491;Alias=CR31491-RA;Dbxref=FlyBase_Annotation_IDs:CR31491-RA;score_text=Weakly" tRNAscann="Gly_chr3R_trna76" - - "Rfam_10.0=RF00005;tRNA;ABJB010436523.1/406-477\|5.7e-27" - - -	12295	2,956,655 – 2,956,744	+	13	106	80.25	-2.19	0.79	0.990849
8956	dm3.chr3R	2,956,655 – 2,956,744		12296	2,956,655 – 2,956,744	-	13	106	80.25	-1.89	0.92	0.988532
8957	dm3.chr3R	2,957,273 – 2,957,382	- - - - - - - -	12297	2,957,273 – 2,957,382	+	5	113	66.86	-1.29	0.44	0.535607
8958	dm3.chr3R	2,975,666 – 2,975,760	- - - intron="intron;ID=intron_FBgn0053546:5_FBgn0053546:4;Name=gfzf-in;Parent=FBtr0091512;parent_type=mRNA" - - - -	12298	2,975,666 – 2,975,760	+	5	103	59.65	-1.25	0.43	0.921447
8959	dm3.chr3R	2,980,960 – 2,981,026	- - - - - - - -	12299	2,980,960 – 2,981,026	-	5	66	83.33	-2.39	0.71	0.962797
8960	dm3.chr3R	2,987,961 – 2,988,024	- - - - - - - -	12300	2,987,961 – 2,988,024	+	6	63	65.71	-1.17	0.42	0.782861
8960	dm3.chr3R	2,987,961 – 2,988,024	- - - - - - - -	12301	2,987,961 – 2,988,024	-	6	63	65.71	-1.51	0.44	0.951349
8961	dm3.chr3R	3,005,829 – 3,005,931	- - CDS="CDS;ID=CDS_FBgn0002306:8_45;Name=sas-cds;Parent=FBtr0081570;parent_type=mRNA" - - - - -	12302	3,005,829 – 3,005,931	-	12	121	62.45	-1.75	0.32	0.884805
8962	dm3.chr3R	3,006,335 – 3,006,447	- - CDS="CDS;ID=CDS_FBgn0002306:8_45;Name=sas-cds;Parent=FBtr0081570;parent_type=mRNA" - - - - -	12303	3,006,335 – 3,006,447	+	7	113	68.22	-2.14	0.38	0.973032
8962	dm3.chr3R	3,006,335 – 3,006,447		12304	3,006,335 – 3,006,447	-	7	113	68.22	-2.05	0.42	0.983272
8963	dm3.chr3R	3,010,858 – 3,010,978	- - CDS="CDS;ID=CDS_FBgn0037482:1_17;Name=CG10055-cds;Parent=FBtr0081605;parent_type=mRNA" - - - - -	12305	3,010,858 – 3,010,978	-	13	120	75.14	-1.14	0.47	0.550215
8964	dm3.chr3R	3,018,480 – 3,018,577	- - CDS="CDS;ID=CDS_FBgn0086372:12_242;Name=lap-cds;Parent=FBtr0305153;parent_type=mRNA" - - - - -	12306	3,018,480 – 3,018,577	+	15	112	73.31	-3.58	0.19	0.965198
8964	dm3.chr3R	3,018,480 – 3,018,577		12307	3,018,480 – 3,018,577	-	15	112	73.31	-2.70	0.28	0.923553
8965	dm3.chr3R	3,022,955 – 3,023,045	- - - intron="intron;ID=intron_FBgn0086372:19_FBgn0086372:20;Name=lap-in;Parent=FBtr0302184,FBtr0305154,FBtr0305155;parent_type=mRNA" - - - -	12308	3,022,955 – 3,023,045	-	5	90	98.22	-0.83	1.02	0.679337
8966	dm3.chr3R	3,025,700 – 3,025,798	- - - - - - - -	12309	3,025,700 – 3,025,798	+	5	98	94.08	-1.72	0.89	0.781126
8967	dm3.chr3R	3,030,791 – 3,030,884	- - - - - - - -	12310	3,030,791 – 3,030,884	-	6	95	58.07	-1.76	0.24	0.652222
8968	dm3.chr3R	3,039,022 – 3,039,136	- - - - - - - -	12311	3,039,022 – 3,039,136	-	11	119	73.05	-2.50	0.40	0.954060
8969	dm3.chr3R	3,039,724 – 3,039,817	- - - - - - - -	12312	3,039,724 – 3,039,817	+	6	103	84.76	-1.65	0.72	0.585651
8970	dm3.chr3R	3,047,900 – 3,048,001	- - - - - - - -	12313	3,047,900 – 3,048,001	+	6	111	83.32	-1.90	0.61	0.587961
8971	dm3.chr3R	3,049,256 – 3,049,307	- - - - - - - -	12314	3,049,256 – 3,049,307	+	4	51	89.87	-1.04	0.93	0.584808
8972	dm3.chr3R	3,059,218 – 3,059,326	- - - intron="intron;ID=intron_FBgn0037487:2_FBgn0037487:3;Name=CG14608-in;Parent=FBtr0303219;parent_type=mRNA" - - - -	12315	3,059,218 – 3,059,326	-	11	111	81.80	-0.98	0.72	0.512161
8973	dm3.chr3R	3,075,703 – 3,075,805	- - - - - - - -	12316	3,075,703 – 3,075,805	+	13	108	61.93	-1.05	0.34	0.732996
8974	dm3.chr3R	3,083,108 – 3,083,238	- - CDS="CDS;ID=CDS_FBgn0001112:3_264;Name=Gld-cds;Parent=FBtr0081596;parent_type=mRNA" - - - - -	12317	3,083,108 – 3,083,238	-	13	137	71.36	-0.33	0.61	0.556067
8975	dm3.chr3R	3,093,443 – 3,093,557	- - CDS="CDS;ID=CDS_FBgn0028400:3_264;Name=Syt4-cds;Parent=FBtr0081578;parent_type=mRNA" - - - - -	12318	3,093,443 – 3,093,557	-	14	119	78.29	-1.36	0.52	0.624144
8976	dm3.chr3R	3,098,673 – 3,098,770	- - - - - - - -	12319	3,098,673 – 3,098,770	+	5	97	94.00	-1.60	0.87	0.605046
8977	dm3.chr3R	3,107,572 – 3,107,665	- - - - - - - -	12320	3,107,572 – 3,107,665	+	4	99	89.58	-1.22	0.94	0.759673
8978	dm3.chr3R	3,112,200 – 3,112,307	- - - intron="intron;ID=intron_CG2595:2_CG2595:5;Name=RacGAP84C-in;Parent=FBtr0081581;parent_type=mRNA" - - - -	12321	3,112,200 – 3,112,307	+	6	121	71.41	-1.08	0.57	0.729382
8979	dm3.chr3R	3,123,722 – 3,123,822	- - - intron="intron;ID=intron_FBgn0259172:9_FBgn0259172:7;Name=rn-in;Parent=FBtr0299639,FBtr0300518;parent_type=mRNA" - - - -	12322	3,123,722 – 3,123,822	-	5	118	61.92	-1.15	0.48	0.865537
8980	dm3.chr3R	3,135,188 – 3,135,310	- - - - - - - -	12323	3,135,188 – 3,135,288	+	6	103	78.47	-1.81	0.60	0.824812
				12324	3,135,188 – 3,135,288	-	6	103	78.47	-1.59	0.58	0.601400
				12325	3,135,213 – 3,135,310	+	5	97	94.64	-3.13	0.91	0.994311
				12326	3,135,213 – 3,135,310	-	5	97	94.64	-1.96	0.93	0.935813
8981	dm3.chr3R	3,146,357 – 3,146,453	- - - - - - - -	12327	3,146,357 – 3,146,453	-	12	118	73.92	-1.03	0.54	0.529201
8982	dm3.chr3R	3,153,714 – 3,153,805	- - - - - - - -	12328	3,153,714 – 3,153,805	+	8	105	71.35	-2.09	0.36	0.787788
8983	dm3.chr3R	3,161,271 – 3,161,367	- - - - - - - -	12329	3,161,271 – 3,161,367	+	9	97	73.46	-1.89	0.35	0.519863
8983	dm3.chr3R	3,161,271 – 3,161,367	- - - - - - - -	12330	3,161,271 – 3,161,367	-	9	97	73.46	-1.47	0.53	0.869955
8984	dm3.chr3R	3,164,621 – 3,164,712	- - - - - - - -	12331	3,164,621 – 3,164,712	-	12	114	72.97	-0.79	0.60	0.681569
8985	dm3.chr3R	3,166,003 – 3,166,063	- - - - - - - -	12332	3,166,003 – 3,166,063	+	5	74	77.89	-1.77	0.57	0.705274
8985	dm3.chr3R	3,166,003 – 3,166,063	- - - - - - - -	12333	3,166,003 – 3,166,063	-	5	74	77.89	-1.81	0.61	0.830710
8986	dm3.chr3R	3,169,592 – 3,169,656	- - - - - - - -	12334	3,169,592 – 3,169,656	+	8	73	70.89	-1.46	0.44	0.694952
8987	dm3.chr3R	3,174,882 – 3,174,973	- - - - - - - -	12335	3,174,882 – 3,174,973	+	5	120	57.70	-1.76	0.33	0.766057
8988	dm3.chr3R	3,181,591 – 3,181,688	- - - - - - - -	12336	3,181,591 – 3,181,688	+	6	97	95.60	-2.34	0.78	0.734534
8988	dm3.chr3R	3,181,591 – 3,181,688	- - - - - - - -	12337	3,181,591 – 3,181,688	-	6	97	95.60	-1.69	0.92	0.824192
8989	dm3.chr3R	3,181,920 – 3,182,047	- - - - - - - -	12338	3,181,920 – 3,182,024	+	8	121	75.85	-2.01	0.63	0.974456
8989	dm3.chr3R	3,181,920 – 3,182,047	- - - - - - - -	12339	3,181,946 – 3,182,047	+	8	120	70.21	-1.55	0.52	0.893332
8990	dm3.chr3R	3,186,567 – 3,186,662	- - - - - - - -	12340	3,186,567 – 3,186,662	+	7	111	77.57	-2.49	0.60	0.986877
8991	dm3.chr3R	3,197,632 – 3,197,730	- - - - - - - -	12341	3,197,632 – 3,197,730	+	7	113	62.37	-2.25	0.19	0.596689
8992	dm3.chr3R	3,214,385 – 3,214,480	- - - - - - - -	12342	3,214,385 – 3,214,480	-	9	100	81.57	-1.22	0.69	0.554909
8993	dm3.chr3R	3,229,454 – 3,229,547	- - - - - - - -	12343	3,229,454 – 3,229,547	+	12	116	74.03	-2.65	0.48	0.994196
8993	dm3.chr3R	3,229,454 – 3,229,547	- - - - - - - -	12344	3,229,454 – 3,229,547	-	12	116	74.03	-1.52	0.51	0.836748
8994	dm3.chr3R	3,239,835 – 3,239,938	- - - - - - - -	12345	3,239,835 – 3,239,938	+	9	105	80.14	-2.04	0.42	0.500000
8995	dm3.chr3R	3,247,908 – 3,248,068	- - CDS="CDS;ID=CDS_FBgn0037502:6_192;Name=wa-cup-cds;Parent=FBtr0301649;parent_type=mRNA" - - - - -	12346	3,247,908 – 3,248,028	+	12	120	85.20	-2.97	0.56	0.980253
				12347	3,247,908 – 3,248,028	-	12	120	85.20	-2.62	0.65	0.978046
				12348	3,247,948 – 3,248,068	+	12	120	81.44	-1.64	0.55	0.618228
8996	dm3.chr3R	3,250,866 – 3,250,917	- - - - - - - -	12349	3,250,866 – 3,250,917	-	4	51	92.48	-1.31	0.97	0.850052
8997	dm3.chr3R	3,257,046 – 3,257,101	- - - - - - - -	12350	3,257,046 – 3,257,101	+	8	55	94.94	-1.17	0.96	0.704677
8998	dm3.chr3R	3,261,292 – 3,261,396	- - - - - - - -	12351	3,261,292 – 3,261,396	-	6	106	66.88	-1.04	0.43	0.522571
8999	dm3.chr3R	3,267,990 – 3,268,222	- - - - - - - -	12352	3,267,990 – 3,268,096	+	8	108	69.79	-1.09	0.46	0.508496
				12353	3,268,096 – 3,268,194	-	5	105	75.00	-1.95	0.55	0.895257
				12354	3,268,130 – 3,268,222	+	4	92	94.93	-2.06	0.94	0.951384
				12355	3,268,130 – 3,268,222	-	4	92	94.93	-1.24	0.99	0.838444
9000	dm3.chr3R	3,272,213 – 3,272,304	- - - - - - - -	12356	3,272,213 – 3,272,304	+	12	117	75.98	-1.97	0.51	0.868404
9001	dm3.chr3R	3,284,476 – 3,284,589	- - - - - - - -	12357	3,284,476 – 3,284,589	-	11	119	87.56	-2.54	0.58	0.813492
9002	dm3.chr3R	3,293,747 – 3,293,847	- - - - - - - -	12358	3,293,747 – 3,293,847	+	6	106	69.83	-2.09	0.37	0.779425
9003	dm3.chr3R	3,311,414 – 3,311,601	- - - - - - - -	12359	3,311,414 – 3,311,533	-	5	120	86.98	-2.14	0.88	0.966233
				12360	3,311,494 – 3,311,599	-	5	110	78.16	-1.51	0.72	0.725260
				12361	3,311,502 – 3,311,601	+	5	104	79.93	-1.79	0.68	0.718893
				12362	3,311,502 – 3,311,601	-	5	104	79.93	-1.75	0.77	0.874969
9004	dm3.chr3R	3,338,833 – 3,338,891	- - - intron="intron;ID=intron_CG1121:1_CG1121:2;Name=alpha-Est8-in;Parent=FBtr0081553;parent_type=mRNA" - - - -	12363	3,338,833 – 3,338,891	-	5	58	75.64	-1.74	0.55	0.594672
9005	dm3.chr3R	3,343,482 – 3,343,533	- - - - - - - -	12364	3,343,482 – 3,343,533	-	3	60	57.89	-0.17	0.78	0.582051
9006	dm3.chr3R	3,356,816 – 3,356,874	- - - intron="intron;ID=intron_CG2512:2_CG2512:3;Name=alphaTub84D-in;Parent=FBtr0081539;parent_type=mRNA" - - - -	12365	3,356,816 – 3,356,874	+	5	58	94.14	-2.87	0.94	0.993606
9006	dm3.chr3R	3,356,816 – 3,356,874		12366	3,356,816 – 3,356,874	-	5	58	94.14	-2.27	0.92	0.966331
9007	dm3.chr3R	3,358,052 – 3,358,169	- - CDS="CDS;ID=CDS_CG2512:3_70;Name=alphaTub84D-cds;Parent=FBtr0081539;parent_type=mRNA" - - "Noncode_2.0=n210479_u204467_AK139683_mRNAlike\|2.5e-08" "unique_Noncode_2.0=u204467_mRNAlike\|2.2e-08" -	12367	3,358,052 – 3,358,169	+	15	117	79.19	-1.10	0.58	0.565026
9008	dm3.chr3R	3,379,703 – 3,379,819	- - - - - - - -	12368	3,379,703 – 3,379,819	+	4	120	77.16	-2.02	0.52	0.634509
9009	dm3.chr3R	3,383,815 – 3,383,881	- - - - - - - -	12369	3,383,815 – 3,383,881	-	7	74	72.68	-1.96	0.42	0.837380
9010	dm3.chr3R	3,389,809 – 3,389,863	- - - - - - - -	12370	3,389,809 – 3,389,863	+	5	54	94.26	-1.30	0.90	0.515928
9011	dm3.chr3R	3,402,296 – 3,402,431	- - - intron="intron;ID=intron_FBgn0083963:6_FBgn0083963:5;Name=CG34127-in;Parent=FBtr0301072;parent_type=mRNA" - - - -	12371	3,402,296 – 3,402,396	-	5	115	62.45	-1.18	0.46	0.819253
				12372	3,402,328 – 3,402,423	-	5	95	75.34	-1.71	0.54	0.811926
				12373	3,402,336 – 3,402,431	-	5	95	74.50	-1.63	0.57	0.869475
9012	dm3.chr3R	3,415,712 – 3,415,840	- - - intron="intron;ID=intron_FBgn0083963:10_FBgn0083963:9;Name=CG34127-in;Parent=FBtr0301072;parent_type=mRNA" - - - -	12374	3,415,712 – 3,415,840	-	10	152	68.19	-1.11	0.52	0.843614
9013	dm3.chr3R	3,418,540 – 3,418,631	- - - intron="intron;ID=intron_FBgn0083963:10_FBgn0083963:9;Name=CG34127-in;Parent=FBtr0301072;parent_type=mRNA" - - - -	12375	3,418,540 – 3,418,631	+	8	94	69.63	-1.59	0.49	0.958758
9013	dm3.chr3R	3,418,540 – 3,418,631		12376	3,418,540 – 3,418,631	-	8	94	69.63	-1.78	0.47	0.970923
9014	dm3.chr3R	3,424,905 – 3,425,049	- - - intron="intron;ID=intron_FBgn0083963:11_FBgn0083963:10;Name=CG34127-in;Parent=FBtr0301072;parent_type=mRNA" - - - -	12377	3,424,905 – 3,425,049	+	5	144	88.38	-1.76	0.77	0.612722
9015	dm3.chr3R	3,425,858 – 3,425,986	- - - intron="intron;ID=intron_FBgn0083963:11_FBgn0083963:10;Name=CG34127-in;Parent=FBtr0301072;parent_type=mRNA" - - - -	12378	3,425,858 – 3,425,965	-	9	116	70.66	-2.68	0.37	0.990178
9015	dm3.chr3R	3,425,858 – 3,425,986		12379	3,425,893 – 3,425,986	-	10	111	74.40	-2.81	0.40	0.986588
9016	dm3.chr3R	3,442,122 – 3,442,172	- - - intron="intron;ID=intron_FBgn0083963:13_FBgn0083963:12;Name=CG34127-in;Parent=FBtr0301072;parent_type=mRNA" - - - -	12380	3,442,122 – 3,442,172	-	4	50	96.00	-2.92	0.85	0.974095
9017	dm3.chr3R	3,452,658 – 3,452,754	- - - intron="intron;ID=intron_FBgn0083963:13_FBgn0083963:12;Name=CG34127-in;Parent=FBtr0301072;parent_type=mRNA" - - - -	12381	3,452,658 – 3,452,754	-	8	118	72.30	-2.94	0.35	0.978418
9018	dm3.chr3R	3,473,693 – 3,473,794	- - - - - - - -	12382	3,473,693 – 3,473,794	+	6	114	65.04	-1.05	0.51	0.865039
9019	dm3.chr3R	3,476,976 – 3,477,047	- - - - - - - -	12383	3,476,976 – 3,477,047	+	4	84	63.16	-0.62	0.57	0.500000
9020	dm3.chr3R	3,477,156 – 3,477,212	- - - - - - - -	12384	3,477,156 – 3,477,212	+	4	56	94.64	-2.68	0.86	0.967040
9021	dm3.chr3R	3,484,811 – 3,484,915	- - - intron="intron;ID=intron_FBgn0051146:2_FBgn0051146:3;Name=Nlg1-in;Parent=FBtr0081541;parent_type=mRNA" - - - -	12385	3,484,811 – 3,484,915	+	6	108	61.47	-1.89	0.26	0.750483
9022	dm3.chr3R	3,491,884 – 3,491,983	- - - intron="intron;ID=intron_FBgn0051146:3_FBgn0051146:4;Name=Nlg1-in;Parent=FBtr0081541,FBtr0305969;parent_type=mRNA" - - - -	12386	3,491,884 – 3,491,983	-	7	103	82.63	-1.83	0.61	0.698576
9023	dm3.chr3R	3,500,291 – 3,500,383	- - - intron="intron;ID=intron_FBgn0051146:8_FBgn0051146:9;Name=Nlg1-in;Parent=FBtr0081541,FBtr0305969;parent_type=mRNA" - - - -	12387	3,500,291 – 3,500,383	-	9	109	63.99	-1.59	0.44	0.977103
9024	dm3.chr3R	3,522,800 – 3,522,871	- - - - - - - -	12388	3,522,800 – 3,522,871	+	3	87	66.28	-2.04	0.44	0.796715
9024	dm3.chr3R	3,522,800 – 3,522,871	- - - - - - - -	12389	3,522,800 – 3,522,871	-	3	87	66.28	-0.99	0.61	0.500000
9025	dm3.chr3R	3,541,868 – 3,541,959	- - - - - - - -	12390	3,541,868 – 3,541,959	-	4	91	85.69	-2.02	0.75	0.817162
9026	dm3.chr3R	3,546,981 – 3,547,061	- - - - - - - -	12391	3,546,981 – 3,547,061	-	7	81	67.98	-1.40	0.47	0.934988
9027	dm3.chr3R	3,551,654 – 3,551,746	- - - - - - - -	12392	3,551,654 – 3,551,746	+	3	92	68.84	-1.09	0.66	0.591108
9028	dm3.chr3R	3,564,293 – 3,564,387	- - - - - - - -	12393	3,564,293 – 3,564,387	-	12	120	75.12	-1.73	0.45	0.512815
9029	dm3.chr3R	3,572,072 – 3,572,169	- - - - - - - -	12394	3,572,072 – 3,572,169	+	11	111	72.35	-1.61	0.37	0.582010
9030	dm3.chr3R	3,602,527 – 3,602,619	- - - - - - - -	12395	3,602,527 – 3,602,619	-	6	99	63.86	-1.99	0.26	0.669887
9031	dm3.chr3R	3,607,163 – 3,607,272	- - - intron="intron;ID=intron_FBgn0042104:2_FBgn0042104:1;Name=CG18747-in;Parent=FBtr0273255;parent_type=mRNA" - - - -	12396	3,607,163 – 3,607,272	+	6	139	70.71	-1.47	0.47	0.582620
9032	dm3.chr3R	3,628,174 – 3,628,268	- - - - - - - -	12397	3,628,174 – 3,628,268	-	5	94	92.02	-1.86	0.88	0.872930
9033	dm3.chr3R	3,632,250 – 3,632,354	- - CDS="CDS;ID=CDS_CG2993:4_67;Name=CG2993-cds;Parent=FBtr0081771;parent_type=mRNA" - - - - -	12398	3,632,250 – 3,632,354	-	8	112	87.63	-0.62	0.99	0.665185
9034	dm3.chr3R	3,634,755 – 3,634,865	- - CDS="CDS;ID=CDS_CG2993:1_67;Name=CG2993-cds;Parent=FBtr0081771;parent_type=mRNA" - - - - -	12399	3,634,755 – 3,634,865	-	13	110	88.74	-1.10	0.83	0.500000
9035	dm3.chr3R	3,634,968 – 3,635,059	- - - - - - - -	12400	3,634,968 – 3,635,059	-	6	95	72.57	-1.10	0.72	0.911909
9036	dm3.chr3R	3,643,803 – 3,643,893	- - - intron="intron;ID=intron_FBgn0085413:1_FBgn0085413:2;Name=CG34384-in;Parent=FBtr0112625,FBtr0304918,FBtr0304919,FBtr0304920;parent_type=mRNA" - - - -	12401	3,643,803 – 3,643,893	-	7	104	75.04	-1.34	0.58	0.603130
9037	dm3.chr3R	3,652,978 – 3,653,074	- - - intron="intron;ID=intron_FBgn0085413:3_FBgn0085413:4;Name=CG34384-in;Parent=FBtr0302036;parent_type=mRNA" - - - -	12402	3,652,978 – 3,653,074	-	8	104	64.62	-0.46	0.52	0.695325
9038	dm3.chr3R	3,657,825 – 3,657,917	- - - intron="intron;ID=intron_FBgn0085413:3_FBgn0085413:4;Name=CG34384-in;Parent=FBtr0302036;parent_type=mRNA" - - - -	12403	3,657,825 – 3,657,917	-	4	92	91.30	-1.41	0.86	0.500000
9039	dm3.chr3R	3,673,557 – 3,673,666	- - CDS="CDS;ID=CDS_FBgn0085413:13_245;Name=CG34384-cds;Parent=FBtr0304919;parent_type=mRNA" - - - - -	12404	3,673,557 – 3,673,665	+	11	120	61.03	-1.59	0.28	0.781439
				12405	3,673,557 – 3,673,665	-	11	120	61.03	-1.78	0.27	0.856134
				12406	3,673,558 – 3,673,666	+	11	120	60.96	-1.70	0.27	0.807458
				12407	3,673,558 – 3,673,666	-	11	120	60.96	-1.83	0.27	0.876189
9040	dm3.chr3R	3,680,234 – 3,680,320	- - - - - - - -	12408	3,680,234 – 3,680,320	+	10	92	57.77	-2.55	0.24	0.993506
9041	dm3.chr3R	3,698,568 – 3,698,666	- - - intron="intron;ID=intron_FBgn0037525:19_FBgn0037525:17;Name=CG17816-in;Parent=FBtr0300826;parent_type=mRNA" - - - -	12409	3,698,568 – 3,698,666	+	9	119	69.64	-2.29	0.28	0.727045
9042	dm3.chr3R	3,698,886 – 3,699,004	- - - intron="intron;ID=intron_FBgn0037525:19_FBgn0037525:17;Name=CG17816-in;Parent=FBtr0300826;parent_type=mRNA" - - - -	12410	3,698,886 – 3,699,004	+	8	118	74.06	-1.29	0.51	0.521298
9043	dm3.chr3R	3,703,513 – 3,703,604	- - - intron="intron;ID=intron_FBgn0037525:19_FBgn0037525:17;Name=CG17816-in;Parent=FBtr0300826;parent_type=mRNA" - - - -	12411	3,703,513 – 3,703,604	+	3	91	94.14	-1.72	0.87	0.643740
9044	dm3.chr3R	3,706,390 – 3,706,485	- - - intron="intron;ID=intron_FBgn0037525:19_FBgn0037525:17;Name=CG17816-in;Parent=FBtr0300826;parent_type=mRNA" - - - -	12412	3,706,390 – 3,706,485	+	6	104	61.83	-0.97	0.45	0.796279
9045	dm3.chr3R	3,707,091 – 3,707,194	- - - intron="intron;ID=intron_FBgn0037525:19_FBgn0037525:17;Name=CG17816-in;Parent=FBtr0300826;parent_type=mRNA" - - - -	12413	3,707,091 – 3,707,194	-	9	104	67.82	-2.08	0.23	0.565979
9046	dm3.chr3R	3,722,121 – 3,722,220	- - - intron="intron;ID=intron_CG31284:6_CG31284:3;Name=wtrw-in;Parent=FBtr0081755;parent_type=mRNA" - - - -	12414	3,722,121 – 3,722,220	-	5	99	79.41	-1.67	0.68	0.777344
9047	dm3.chr3R	3,747,695 – 3,747,793	- - - intron="intron;ID=intron_CG2684:2_CG2684:3;Name=lds-in;Parent=FBtr0081758;parent_type=mRNA" - - - -	12415	3,747,695 – 3,747,793	+	12	113	64.42	-0.75	0.42	0.689581
9048	dm3.chr3R	3,753,541 – 3,753,632	- - - intron="intron;ID=intron_CG11094:4_CG11094:5;Name=dsx-in;Parent=FBtr0081759;parent_type=mRNA" - - - -	12416	3,753,541 – 3,753,632	-	6	94	66.89	-2.04	0.34	0.866352
9049	dm3.chr3R	3,755,885 – 3,755,955	- - - - - - - -	12417	3,755,885 – 3,755,955	+	9	73	87.89	-2.13	0.79	0.931051
9049	dm3.chr3R	3,755,885 – 3,755,955	- - - - - - - -	12418	3,755,885 – 3,755,955	-	9	73	87.89	-1.30	0.83	0.584920
9050	dm3.chr3R	3,760,297 – 3,760,388	- - - intron="intron;ID=intron_CG11094:3_CG11094:4;Name=dsx-in;Parent=FBtr0081759;parent_type=mRNA" - - - -	12419	3,760,297 – 3,760,388	+	3	93	91.34	-1.30	1.02	0.936662
9051	dm3.chr3R	3,761,274 – 3,761,385	- - CDS="CDS;ID=CDS_CG11094:6_25;Name=dsx-cds;Parent=FBtr0081760,FBtr0081761;parent_type=mRNA" intron="intron;ID=intron_CG11094:3_CG11094:4;Name=dsx-in;Parent=FBtr0081759;parent_type=mRNA" - - - -	12420	3,761,274 – 3,761,385	-	14	120	83.90	-1.99	0.67	0.920706
9052	dm3.chr3R	3,764,152 – 3,764,206	- - - intron="intron;ID=intron_CG11094:2_CG11094:3;Name=dsx-in;Parent=FBtr0081759,FBtr0081760,FBtr0081761;parent_type=mRNA" - - - -	12421	3,764,152 – 3,764,206	-	4	57	73.87	-1.52	0.58	0.626862
9053	dm3.chr3R	3,782,582 – 3,782,684	- - - intron="intron;ID=intron_CG11094:2_CG11094:3;Name=dsx-in;Parent=FBtr0081759,FBtr0081760,FBtr0081761;parent_type=mRNA" - - - -	12422	3,782,582 – 3,782,684	+	5	120	79.80	-1.93	0.57	0.683265
9054	dm3.chr3R	3,795,274 – 3,795,338	- - - - - - - -	12423	3,795,274 – 3,795,338	+	4	74	80.70	-2.61	0.70	0.979069
9055	dm3.chr3R	3,806,209 – 3,806,270	- - - - - - - -	12424	3,806,209 – 3,806,270	+	4	63	87.80	-1.94	0.84	0.887581
9055	dm3.chr3R	3,806,209 – 3,806,270	- - - - - - - -	12425	3,806,209 – 3,806,270	-	4	63	87.80	-2.71	0.87	0.989902
9056	dm3.chr3R	3,817,973 – 3,818,068	- - - intron="intron;ID=intron_CG2781:1_CG2781:2;Name=CG2781-in;Parent=FBtr0081823;parent_type=mRNA" - - - -	12426	3,817,973 – 3,818,068	-	3	97	81.36	-2.70	0.74	0.977753
9057	dm3.chr3R	3,828,341 – 3,828,461	- - CDS="CDS;ID=CDS_FBgn0037536:4_17;Name=CG2698-cds;Parent=FBtr0081784;parent_type=mRNA" - - - - -	12427	3,828,341 – 3,828,461	+	12	120	76.36	-1.66	0.46	0.802986
9058	dm3.chr3R	3,829,228 – 3,829,348	- - CDS="CDS;ID=CDS_FBgn0037536:5_17;Name=CG2698-cds;Parent=FBtr0081784;parent_type=mRNA" - - - - -	12428	3,829,228 – 3,829,348	-	13	120	81.34	-2.25	0.42	0.696860
9059	dm3.chr3R	3,837,979 – 3,838,097	- - CDS="CDS;ID=CDS_CG10435:1_46;Name=CG10435-cds;Parent=FBtr0081820;parent_type=mRNA" - - - - -	12429	3,837,979 – 3,838,097	+	10	120	59.16	-1.73	0.28	0.934793
9060	dm3.chr3R	3,853,953 – 3,854,061	- - - - - - - -	12430	3,853,953 – 3,854,052	-	4	99	86.20	-3.28	0.65	0.985945
9060	dm3.chr3R	3,853,953 – 3,854,061	- - - - - - - -	12431	3,853,962 – 3,854,061	-	4	99	85.35	-3.62	0.59	0.992024
9061	dm3.chr3R	3,878,860 – 3,878,955	- - - - - - - -	12432	3,878,860 – 3,878,955	-	6	96	73.93	-1.17	0.57	0.656642
9062	dm3.chr3R	3,883,823 – 3,883,876	- - - - - - - -	12433	3,883,823 – 3,883,876	+	8	53	92.32	-2.70	0.94	0.993584
9063	dm3.chr3R	3,889,295 – 3,889,359	- - - intron="intron;ID=intron_CG7918:1_CG7918:2;Name=CG7918-in;Parent=FBtr0081789;parent_type=mRNA" - - - -	12434	3,889,295 – 3,889,359	+	11	64	77.77	-1.19	0.59	0.689703
9063	dm3.chr3R	3,889,295 – 3,889,359		12435	3,889,295 – 3,889,359	-	11	64	77.77	-3.00	0.50	0.997040
9064	dm3.chr3R	3,892,231 – 3,892,326	- - - intron="intron;ID=intron_CG7918:1_CG7918:2;Name=CG7918-in;Parent=FBtr0081789;parent_type=mRNA" - - - -	12436	3,892,231 – 3,892,326	+	7	95	69.28	-2.70	0.65	0.999213
9064	dm3.chr3R	3,892,231 – 3,892,326		12437	3,892,231 – 3,892,326	-	7	95	69.28	-3.02	0.54	0.999252
9065	dm3.chr3R	3,895,501 – 3,895,567	- - - intron="intron;ID=intron_CG7918:1_CG7918:2;Name=CG7918-in;Parent=FBtr0081789;parent_type=mRNA" - - - -	12438	3,895,501 – 3,895,567	-	8	66	85.01	-1.61	0.75	0.818735
9066	dm3.chr3R	3,903,355 – 3,903,418	- - - intron="intron;ID=intron_CG7918:1_CG7918:2;Name=CG7918-in;Parent=FBtr0081789;parent_type=mRNA" - - - -	12439	3,903,355 – 3,903,418	+	9	71	80.51	-1.74	0.69	0.896309
9067	dm3.chr3R	3,910,689 – 3,910,791	- - CDS="CDS;ID=CDS_CG7918:4_73;Name=CG7918-cds;Parent=FBtr0081789;parent_type=mRNA" - - - - -	12440	3,910,689 – 3,910,791	+	13	114	75.26	-1.32	0.45	0.590050
9068	dm3.chr3R	3,912,655 – 3,912,726	- - - - - - - -	12441	3,912,655 – 3,912,726	-	9	80	75.04	-1.53	0.55	0.863211
9069	dm3.chr3R	3,915,757 – 3,915,900	- - - - - - - -	12442	3,915,757 – 3,915,900	+	3	145	88.68	-3.04	0.62	0.894830
9070	dm3.chr3R	3,931,006 – 3,931,103	- - - - - - - -	12443	3,931,006 – 3,931,103	-	3	97	95.88	-1.80	0.93	0.864717
9071	dm3.chr3R	3,932,249 – 3,932,342	- - - intron="intron;ID=intron_CG7850:1_CG7850:2;Name=puc-in;Parent=FBtr0081792;parent_type=mRNA" - - - -	12444	3,932,249 – 3,932,342	-	10	106	81.80	-2.38	0.52	0.846536
9072	dm3.chr3R	3,933,592 – 3,933,691	- - - intron="intron;ID=intron_CG7850:1_CG7850:2;Name=puc-in;Parent=FBtr0081792;parent_type=mRNA" - - - -	12445	3,933,592 – 3,933,691	+	5	101	95.59	-3.14	0.96	0.996400
9072	dm3.chr3R	3,933,592 – 3,933,691		12446	3,933,592 – 3,933,691	-	5	101	95.59	-3.53	0.98	0.998223
9073	dm3.chr3R	3,934,418 – 3,934,490	- - - intron="intron;ID=intron_CG7850:2_CG7850:3;Name=puc-in;Parent=FBtr0081792;parent_type=mRNA" - - - -	12447	3,934,418 – 3,934,490	+	7	76	71.22	-0.79	0.54	0.500000
9074	dm3.chr3R	3,937,221 – 3,937,388	- - - intron="intron;ID=intron_CG7850:3_CG7850:4;Name=puc-in;Parent=FBtr0081792;parent_type=mRNA" - - - -	12448	3,937,221 – 3,937,388	-	7	178	61.46	-1.03	0.37	0.599152
9075	dm3.chr3R	3,940,723 – 3,940,832	- - - intron="intron;ID=intron_CG7850:3_CG7850:4;Name=puc-in;Parent=FBtr0081792;parent_type=mRNA" - - - -	12449	3,940,723 – 3,940,832	+	5	120	87.26	-1.72	0.78	0.705189
9076	dm3.chr3R	3,944,441 – 3,944,496	- - - intron="intron;ID=intron_CG7850:3_CG7850:4;Name=puc-in;Parent=FBtr0081792;parent_type=mRNA" - - - -	12450	3,944,441 – 3,944,496	-	5	55	70.36	-1.12	0.59	0.854063
9077	dm3.chr3R	3,966,447 – 3,966,523	FBnoncoding="tRNA;ID=FBtr0081810;Name=tRNA:R2:84Fb-RA;Parent=FBgn0011960;Dbxref=FlyBase_Annotation_IDs:CR31566-RA;score_text=Weakly" tRNAscann="Arg_chr3R_trna69" - - "Rfam_10.0=RF00005;tRNA;AAPU01010262.1/58672-58744\|2.0e-32" "Noncode_2.0=n144358_u143456_DQ573323_piRNA_human\|5.8e-08" "unique_Noncode_2.0=u143456_piRNA_human\|5.0e-08" -	12451	3,966,447 – 3,966,523	+	13	88	68.63	-2.06	0.90	0.997761
9077	dm3.chr3R	3,966,447 – 3,966,523		12452	3,966,447 – 3,966,523	-	13	88	68.63	-1.83	0.91	0.996458
9078	dm3.chr3R	3,966,690 – 3,966,774	FBnoncoding="tRNA;ID=FBtr0081809;Name=tRNA:R2:84Fa-RA;Parent=FBgn0011959;Dbxref=FlyBase_Annotation_IDs:CR31581-RA;score_text=Weakly" tRNAscann="Arg_chr3R_trna68" - - "Rfam_10.0=RF00005;tRNA;AAPU01010262.1/58672-58744\|2.3e-32" "Noncode_2.0=n144358_u143456_DQ573323_piRNA_human\|6.6e-08" "unique_Noncode_2.0=u143456_piRNA_human\|5.7e-08" -	12453	3,966,690 – 3,966,774	+	11	97	84.71	-1.44	0.95	0.955277
9078	dm3.chr3R	3,966,690 – 3,966,774		12454	3,966,690 – 3,966,774	-	11	97	84.71	-1.28	0.97	0.942519
9079	dm3.chr3R	3,978,689 – 3,978,809	- - - intron="intron;ID=intron_FBgn0001138:4_FBgn0001138:3;Name=grn-in;Parent=FBtr0081808,FBtr0300040;parent_type=mRNA" - - - -	12455	3,978,689 – 3,978,801	-	5	112	77.84	-1.96	0.62	0.885252
9079	dm3.chr3R	3,978,689 – 3,978,809		12456	3,978,697 – 3,978,809	-	5	112	74.59	-0.95	0.75	0.687228
9080	dm3.chr3R	3,981,733 – 3,981,830	- - - intron="intron;ID=intron_FBgn0001138:5_FBgn0001138:4;Name=grn-in;Parent=FBtr0081808,FBtr0300040;parent_type=mRNA" - - - -	12457	3,981,733 – 3,981,830	+	12	117	73.19	-1.40	0.52	0.766796
9081	dm3.chr3R	3,983,216 – 3,983,344	- - - intron="intron;ID=intron_FBgn0001138:5_FBgn0001138:4;Name=grn-in;Parent=FBtr0081808,FBtr0300040;parent_type=mRNA" - - - -	12458	3,983,216 – 3,983,308	-	10	108	60.12	-1.76	0.25	0.779767
9081	dm3.chr3R	3,983,216 – 3,983,344		12459	3,983,244 – 3,983,344	-	11	116	62.79	-1.86	0.24	0.691034
9082	dm3.chr3R	3,984,840 – 3,984,915	- - - intron="intron;ID=intron_FBgn0001138:5_FBgn0001138:4;Name=grn-in;Parent=FBtr0081808,FBtr0300040;parent_type=mRNA" - - - -	12460	3,984,840 – 3,984,915	-	4	76	81.32	-2.14	0.54	0.569370
9083	dm3.chr3R	3,987,719 – 3,987,769	- - - intron="intron;ID=intron_FBgn0001138:6_FBgn0001138:5;Name=grn-in;Parent=FBtr0300040;parent_type=mRNA" - - - -	12461	3,987,719 – 3,987,769	+	7	54	84.36	-3.32	0.69	0.996333
9083	dm3.chr3R	3,987,719 – 3,987,769		12462	3,987,719 – 3,987,769	-	7	54	84.36	-1.44	0.77	0.653294
9084	dm3.chr3R	3,992,840 – 3,992,950	- - CDS="CDS;ID=CDS_FBgn0001138:6_162;Name=grn-cds;Parent=FBtr0300040;parent_type=mRNA" - - - - -	12463	3,992,840 – 3,992,950	+	6	113	65.03	-1.74	0.48	0.983301
9085	dm3.chr3R	3,997,155 – 3,997,245	- - - intron="intron;ID=intron_FBgn0001138:9_FBgn0001138:8;Name=grn-in;Parent=FBtr0081808,FBtr0300040;parent_type=mRNA" - - - -	12464	3,997,155 – 3,997,245	-	5	90	72.10	-1.11	0.62	0.775911
9086	dm3.chr3R	4,004,885 – 4,004,995	- - - intron="intron;ID=intron_FBgn0001138:9_FBgn0001138:8;Name=grn-in;Parent=FBtr0081808,FBtr0300040;parent_type=mRNA" - - - -	12465	4,004,885 – 4,004,995	+	3	116	92.24	-1.75	0.88	0.769807
9087	dm3.chr3R	4,020,428 – 4,020,518	- - - - - - - -	12466	4,020,428 – 4,020,518	+	5	114	68.11	-1.68	0.72	0.979783
9087	dm3.chr3R	4,020,428 – 4,020,518	- - - - - - - -	12467	4,020,428 – 4,020,518	-	5	114	68.11	-1.16	0.58	0.632862
9088	dm3.chr3R	4,020,637 – 4,020,727	- - - - - - - -	12468	4,020,637 – 4,020,727	-	5	103	70.06	-1.37	0.55	0.795251
9089	dm3.chr3R	4,022,559 – 4,022,649	- - - - - - - -	12469	4,022,559 – 4,022,649	+	10	97	77.29	-1.63	0.48	0.533285
9090	dm3.chr3R	4,023,108 – 4,023,214	- - - - - - - -	12470	4,023,108 – 4,023,214	+	5	106	93.11	-1.41	0.91	0.684211
9090	dm3.chr3R	4,023,108 – 4,023,214	- - - - - - - -	12471	4,023,108 – 4,023,214	-	5	106	93.11	-1.19	0.95	0.707691
9091	dm3.chr3R	4,025,502 – 4,025,592	- - - - - - - -	12472	4,025,502 – 4,025,592	+	12	120	73.49	-1.35	0.52	0.635692
9092	dm3.chr3R	4,025,665 – 4,025,776	- - - - - - - -	12473	4,025,665 – 4,025,776	+	9	112	64.59	-0.79	0.47	0.842500
9093	dm3.chr3R	4,026,137 – 4,026,253	- - - - - - - -	12474	4,026,137 – 4,026,233	-	9	102	75.11	-1.21	0.67	0.914496
9093	dm3.chr3R	4,026,137 – 4,026,253	- - - - - - - -	12475	4,026,159 – 4,026,253	-	7	109	85.51	-1.63	0.75	0.658703
9094	dm3.chr3R	4,029,660 – 4,029,763	- - - - - - - -	12476	4,029,660 – 4,029,763	+	8	115	75.57	-1.55	0.48	0.537262
9095	dm3.chr3R	4,031,362 – 4,031,480	- - - - - - - -	12477	4,031,362 – 4,031,480	+	12	120	99.30	-1.64	0.96	0.841834
9096	dm3.chr3R	4,042,095 – 4,042,185	- - - - - - - -	12478	4,042,095 – 4,042,185	+	6	92	94.63	-1.30	0.94	0.709863
9097	dm3.chr3R	4,053,992 – 4,054,103	- - - - - - - -	12479	4,053,992 – 4,054,103	+	12	116	94.76	-0.82	0.97	0.517224
9098	dm3.chr3R	4,056,858 – 4,056,950	- - - - - - - -	12480	4,056,858 – 4,056,950	-	3	93	96.04	-1.90	0.91	0.851298
9099	dm3.chr3R	4,063,327 – 4,063,417	- - CDS="CDS;ID=CDS_CG9638:8_2;Name=Ada2b-cds;Parent=FBtr0100368;parent_type=mRNA" - - - - -	12481	4,063,327 – 4,063,417	+	10	117	68.29	-0.74	0.50	0.510480
9100	dm3.chr3R	4,064,902 – 4,064,992	- - CDS="CDS;ID=CDS_CG9638:2_30;Name=Ada2b-cds;Parent=FBtr0081807;parent_type=mRNA" - - - - -	12482	4,064,902 – 4,064,992	-	14	90	71.12	-1.24	0.38	0.620095
9101	dm3.chr3R	4,082,103 – 4,082,183	- - - intron="intron;ID=intron_FBgn0037559:2_FBgn0037559:3;Name=mtg-in;Parent=FBtr0300601;parent_type=mRNA" - - - -	12483	4,082,103 – 4,082,183	+	6	80	95.83	-1.79	0.92	0.863844
9101	dm3.chr3R	4,082,103 – 4,082,183		12484	4,082,103 – 4,082,183	-	6	80	95.83	-1.43	0.89	0.509838
9102	dm3.chr3R	4,102,431 – 4,102,496	- - - - - - - -	12485	4,102,431 – 4,102,496	+	12	83	65.40	-1.33	0.47	0.943880
9102	dm3.chr3R	4,102,431 – 4,102,496	- - - - - - - -	12486	4,102,431 – 4,102,496	-	12	83	65.40	-1.49	0.50	0.981203
9103	dm3.chr3R	4,103,381 – 4,103,474	- - - - - - - -	12487	4,103,381 – 4,103,474	+	6	94	86.18	-2.64	0.81	0.989571
9103	dm3.chr3R	4,103,381 – 4,103,474	- - - - - - - -	12488	4,103,381 – 4,103,474	-	6	94	86.18	-2.95	0.82	0.995330
9104	dm3.chr3R	4,105,487 – 4,105,561	- - - - - - - -	12489	4,105,487 – 4,105,561	+	12	77	76.67	-0.68	0.71	0.684243
9105	dm3.chr3R	4,106,321 – 4,106,422	- - - - - - - -	12490	4,106,321 – 4,106,422	+	12	111	84.06	-1.96	0.57	0.663447
9105	dm3.chr3R	4,106,321 – 4,106,422	- - - - - - - -	12491	4,106,321 – 4,106,422	-	12	111	84.06	-2.41	0.65	0.965653
9106	dm3.chr3R	4,124,310 – 4,124,422	- - CDS="CDS;ID=CDS_CG9626:4_89;Name=CG9626-cds;Parent=FBtr0081864;parent_type=mRNA" - - - - -	12492	4,124,310 – 4,124,422	-	12	115	70.61	-1.46	0.43	0.914037
9107	dm3.chr3R	4,125,862 – 4,125,954	- - - - - - - -	12493	4,125,862 – 4,125,954	+	12	108	76.02	-1.64	0.51	0.763376
9108	dm3.chr3R	4,157,458 – 4,157,549	- - - - - - - -	12494	4,157,458 – 4,157,549	-	10	109	77.95	-2.04	0.57	0.948151
9109	dm3.chr3R	4,163,525 – 4,163,627	- - - - - - - -	12495	4,163,525 – 4,163,627	+	8	114	78.22	-2.33	0.67	0.985222
9110	dm3.chr3R	4,181,714 – 4,181,844	- - - - - - - -	12496	4,181,714 – 4,181,818	+	4	105	91.55	-1.99	0.93	0.955509
9110	dm3.chr3R	4,181,714 – 4,181,844	- - - - - - - -	12497	4,181,754 – 4,181,844	+	4	100	85.26	-2.02	0.71	0.713068
9111	dm3.chr3R	4,199,301 – 4,199,407	- - - - - - - -	12498	4,199,301 – 4,199,407	-	6	106	81.31	-1.78	0.69	0.868654
9112	dm3.chr3R	4,213,667 – 4,213,766	- - CDS="CDS;ID=CDS_CG31462:1_92;Name=CG31462-cds;Parent=FBtr0081851;parent_type=mRNA" intron="intron;ID=intron_FBgn0250829:2_FBgn0250829:1;Name=CG31369-in;Parent=FBtr0301971;parent_type=mRNA" - - - -	12499	4,213,667 – 4,213,766	+	13	108	64.14	-1.57	0.29	0.819084
9112	dm3.chr3R	4,213,667 – 4,213,766		12500	4,213,667 – 4,213,766	-	13	108	64.14	-1.36	0.27	0.529484
9113	dm3.chr3R	4,214,255 – 4,214,370	- - - - - - - -	12501	4,214,255 – 4,214,370	+	9	115	87.71	-1.92	0.72	0.809845
9114	dm3.chr3R	4,220,247 – 4,220,346	- - - intron="intron;ID=intron_FBgn0250829:7_FBgn0250829:6;Name=CG31369-in;Parent=FBtr0301971;parent_type=mRNA" - - - -	12502	4,220,247 – 4,220,346	+	6	106	78.03	-1.04	0.71	0.579329
9115	dm3.chr3R	4,221,862 – 4,221,957	- - - intron="intron;ID=intron_FBgn0250829:8_FBgn0250829:7;Name=CG31369-in;Parent=FBtr0301971;parent_type=mRNA" - - - -	12503	4,221,862 – 4,221,957	+	12	116	73.22	-1.28	0.50	0.633750
9115	dm3.chr3R	4,221,862 – 4,221,957		12504	4,221,862 – 4,221,957	-	12	116	73.22	-0.78	0.62	0.604687
9116	dm3.chr3R	4,225,759 – 4,225,852	- - - intron="intron;ID=intron_FBgn0250829:14_FBgn0250829:13;Name=CG31369-in;Parent=FBtr0301971;parent_type=mRNA" - - - -	12505	4,225,759 – 4,225,852	+	12	112	77.68	-1.25	0.59	0.582823
9117	dm3.chr3R	4,247,126 – 4,247,227	- - - - - - - -	12506	4,247,126 – 4,247,227	-	11	108	75.63	-1.82	0.43	0.722901
9118	dm3.chr3R	4,248,613 – 4,248,664	- - - - - - - -	12507	4,248,613 – 4,248,664	+	4	55	72.47	-1.95	0.65	0.957940
9119	dm3.chr3R	4,258,147 – 4,258,239	- - - - - - - -	12508	4,258,147 – 4,258,239	+	6	113	71.77	-1.60	0.49	0.731632
9120	dm3.chr3R	4,271,164 – 4,271,256	- - - intron="intron;ID=intron_FBgn0250829:16_FBgn0250829:15;Name=CG31369-in;Parent=FBtr0301971;parent_type=mRNA" - - - -	12509	4,271,164 – 4,271,256	-	9	106	83.72	-2.29	0.50	0.570394
9121	dm3.chr3R	4,275,463 – 4,275,572	- - - intron="intron;ID=intron_FBgn0250829:16_FBgn0250829:15;Name=CG31369-in;Parent=FBtr0301971;parent_type=mRNA" - - - -	12510	4,275,463 – 4,275,572	-	12	114	85.76	-1.08	0.79	0.500000
9122	dm3.chr3R	4,294,517 – 4,294,647	- - - intron="intron;ID=intron_FBgn0250829:16_FBgn0250829:15;Name=CG31369-in;Parent=FBtr0301971;parent_type=mRNA" - - - -	12511	4,294,517 – 4,294,618	+	6	101	76.33	-1.09	0.65	0.599360
9122	dm3.chr3R	4,294,517 – 4,294,647		12512	4,294,547 – 4,294,647	+	5	104	91.36	-1.45	0.96	0.894099
9123	dm3.chr3R	4,298,089 – 4,298,181	- - - intron="intron;ID=intron_FBgn0250829:16_FBgn0250829:15;Name=CG31369-in;Parent=FBtr0301971;parent_type=mRNA" - - - -	12513	4,298,089 – 4,298,181	+	6	108	63.87	-0.37	0.55	0.548177
9124	dm3.chr3R	4,302,696 – 4,302,789	- - - intron="intron;ID=intron_FBgn0250829:16_FBgn0250829:15;Name=CG31369-in;Parent=FBtr0301971;parent_type=mRNA" - - - -	12514	4,302,696 – 4,302,789	+	6	95	84.38	-2.07	0.72	0.909196
9124	dm3.chr3R	4,302,696 – 4,302,789		12515	4,302,696 – 4,302,789	-	6	95	84.38	-2.86	0.85	0.996211
9125	dm3.chr3R	4,304,765 – 4,304,869	- - - - - - - -	12516	4,304,765 – 4,304,869	-	8	108	70.61	-1.10	0.47	0.529680
9126	dm3.chr3R	4,310,968 – 4,311,058	- - - - - - - -	12517	4,310,968 – 4,311,058	+	6	94	87.66	-2.01	0.90	0.969113
9127	dm3.chr3R	4,322,165 – 4,322,280	- - - - - - - -	12518	4,322,165 – 4,322,276	-	11	119	81.35	-1.41	0.64	0.538439
9127	dm3.chr3R	4,322,165 – 4,322,280	- - - - - - - -	12519	4,322,190 – 4,322,280	-	8	119	75.28	-0.78	0.86	0.741513
9128	dm3.chr3R	4,329,379 – 4,329,457	- - - - - - - -	12520	4,329,379 – 4,329,457	+	8	78	58.90	-1.06	0.38	0.815091
9129	dm3.chr3R	4,343,030 – 4,343,130	- - - - - - - -	12521	4,343,030 – 4,343,130	-	7	118	66.32	-1.89	0.37	0.897671
9130	dm3.chr3R	4,343,762 – 4,343,843	- - - - - - - -	12522	4,343,762 – 4,343,843	+	7	102	73.77	-1.05	0.61	0.518636
9131	dm3.chr3R	4,357,658 – 4,357,802	- - - - - - - -	12523	4,357,658 – 4,357,802	+	5	156	87.58	-3.42	0.71	0.993270
9132	dm3.chr3R	4,358,726 – 4,358,823	- - - - - - - -	12524	4,358,726 – 4,358,823	-	8	100	79.68	-1.33	0.64	0.516888
9133	dm3.chr3R	4,359,607 – 4,359,702	- - - - - - - -	12525	4,359,607 – 4,359,702	+	4	120	84.72	-2.36	0.80	0.971929
9134	dm3.chr3R	4,366,282 – 4,366,404	- - - - - - - -	12526	4,366,282 – 4,366,386	+	11	108	70.87	-1.74	0.43	0.960839
				12527	4,366,282 – 4,366,386	-	11	108	70.87	-1.41	0.47	0.940005
				12528	4,366,312 – 4,366,404	+	10	103	73.10	-0.88	0.55	0.562980
				12529	4,366,312 – 4,366,404	-	10	103	73.10	-1.36	0.52	0.838811
9135	dm3.chr3R	4,373,619 – 4,373,728	- - - - - - - -	12530	4,373,619 – 4,373,728	+	6	109	79.25	-1.84	0.63	0.904311
9136	dm3.chr3R	4,374,509 – 4,374,669	- - - - - - - -	12531	4,374,509 – 4,374,604	+	5	101	86.45	-1.38	0.84	0.658443
9136	dm3.chr3R	4,374,509 – 4,374,669	- - - - - - - -	12532	4,374,572 – 4,374,669	+	8	112	75.19	-1.46	0.52	0.729891
9137	dm3.chr3R	4,375,581 – 4,375,711	- - - - - - - -	12533	4,375,581 – 4,375,681	-	9	115	71.38	-1.42	0.42	0.535309
				12534	4,375,619 – 4,375,711	+	7	96	83.85	-1.60	0.72	0.731171
				12535	4,375,619 – 4,375,711	-	7	96	83.85	-1.53	0.81	0.864906
9138	dm3.chr3R	4,376,393 – 4,376,488	- - - - - - - -	12536	4,376,393 – 4,376,488	-	7	105	78.77	-1.34	0.69	0.706698
9139	dm3.chr3R	4,383,129 – 4,383,222	- - - - - - - -	12537	4,383,129 – 4,383,222	+	7	96	63.37	-0.58	0.54	0.774440
9140	dm3.chr3R	4,392,743 – 4,392,814	- - CDS="CDS;ID=CDS_FBgn0051258:4_105;Name=Cenp-C-cds;Parent=FBtr0089973;parent_type=mRNA" - - - - -	12538	4,392,743 – 4,392,814	-	4	71	88.26	-1.88	0.87	0.907672
9141	dm3.chr3R	4,410,021 – 4,410,131	- - - intron="intron;ID=intron_FBgn0261929:1_FBgn0261929:2;Name=CG42796-in;Parent=FBtr0303603;parent_type=mRNA" - - - -	12539	4,410,021 – 4,410,131	+	9	116	76.36	-2.65	0.66	0.996949
9142	dm3.chr3R	4,416,376 – 4,416,453	- - - intron="intron;ID=intron_FBgn0261929:1_FBgn0261929:2;Name=CG42796-in;Parent=FBtr0303603;parent_type=mRNA" - - - -	12540	4,416,376 – 4,416,453	+	8	85	77.39	-1.87	0.63	0.937690
9142	dm3.chr3R	4,416,376 – 4,416,453		12541	4,416,376 – 4,416,453	-	8	85	77.39	-1.91	0.46	0.581474
9143	dm3.chr3R	4,450,405 – 4,450,517	- - - intron="intron;ID=intron_FBgn0261929:6_FBgn0261929:7;Name=CG42796-in;Parent=FBtr0303603;parent_type=mRNA" - - - -	12542	4,450,405 – 4,450,517	-	10	120	74.78	-1.66	0.44	0.576419
9144	dm3.chr3R	4,462,444 – 4,462,543	- - - - - - - -	12543	4,462,444 – 4,462,543	-	5	99	96.57	-1.53	0.92	0.691831
9145	dm3.chr3R	4,479,848 – 4,479,938	- - - intron="intron;ID=intron_FBgn0259992:3_FBgn0259992:1;Name=CG42489-in;Parent=FBtr0304002;parent_type=mRNA" - - - -	12544	4,479,848 – 4,479,938	+	5	90	89.88	-1.56	0.82	0.549915
9146	dm3.chr3R	4,480,206 – 4,480,350	- - - - - - - -	12545	4,480,206 – 4,480,350	+	6	161	77.15	-2.31	0.42	0.694124
9147	dm3.chr3R	4,485,304 – 4,485,377	- - - intron="intron;ID=intron_FBgn0000171:4_FBgn0000171:3;Name=bel-in;Parent=FBtr0081888;parent_type=mRNA" - - - -	12546	4,485,304 – 4,485,377	+	5	77	93.27	-1.29	0.93	0.676709
9148	dm3.chr3R	4,490,196 – 4,490,249	- - CDS="CDS;ID=CDS_CG8032:1_53;Name=CG8032-cds;Parent=FBtr0081880;parent_type=mRNA" - - - - -	12547	4,490,196 – 4,490,249	-	7	53	85.98	-0.97	0.92	0.733489
9149	dm3.chr3R	4,495,969 – 4,496,023	- - - intron="intron;ID=intron_CG8036:5_CG8036:3;Name=CG8036-in;Parent=FBtr0081882;parent_type=mRNA" - - - -	12548	4,495,969 – 4,496,023	-	7	58	74.87	-0.95	0.59	0.527197
9150	dm3.chr3R	4,506,436 – 4,506,628	- - - - - - - -	12549	4,506,436 – 4,506,531	+	7	109	63.01	-2.48	0.37	0.994541
9150	dm3.chr3R	4,506,436 – 4,506,628	- - - - - - - -	12550	4,506,531 – 4,506,628	-	4	97	81.82	-1.99	0.64	0.688559
9151	dm3.chr3R	4,520,036 – 4,520,134	- - - intron="intron;ID=intron_CG9786:3_CG9786:2;Name=hb-in;Parent=FBtr0081951;parent_type=mRNA" - - - -	12551	4,520,036 – 4,520,134	-	5	98	84.04	-3.69	0.79	0.998590
9152	dm3.chr3R	4,521,764 – 4,521,866	- - - - - - - -	12552	4,521,764 – 4,521,866	+	7	104	74.49	-2.01	0.33	0.509589
9153	dm3.chr3R	4,524,068 – 4,524,165	- - - - - - - -	12553	4,524,068 – 4,524,165	+	6	109	84.86	-2.11	0.64	0.719144
9154	dm3.chr3R	4,524,210 – 4,524,317	- - - - - - - -	12554	4,524,210 – 4,524,317	+	5	107	90.28	-1.77	0.77	0.506597
9155	dm3.chr3R	4,525,078 – 4,525,172	- - - - - - - -	12555	4,525,078 – 4,525,172	+	9	99	70.83	-2.07	0.39	0.947782
9155	dm3.chr3R	4,525,078 – 4,525,172	- - - - - - - -	12556	4,525,078 – 4,525,172	-	9	99	70.83	-1.98	0.38	0.916322
9156	dm3.chr3R	4,528,961 – 4,529,111	- - - intron="intron;ID=intron_FBgn0037612:1_FBgn0037612:2;Name=CG8112-in;Parent=FBtr0081904;parent_type=mRNA" - - - -	12557	4,528,961 – 4,529,111	-	9	169	70.27	-2.41	0.24	0.691520
9157	dm3.chr3R	4,531,318 – 4,531,417	- - - intron="intron;ID=intron_FBgn0037612:2_FBgn0037612:3;Name=CG8112-in;Parent=FBtr0081904;parent_type=mRNA" - - - -	12558	4,531,318 – 4,531,417	+	6	100	94.70	-1.68	0.87	0.665323
9158	dm3.chr3R	4,536,270 – 4,536,373	- - - intron="intron;ID=intron_FBgn0037612:2_FBgn0037612:3;Name=CG8112-in;Parent=FBtr0081904;parent_type=mRNA" - - - -	12559	4,536,270 – 4,536,373	+	3	109	71.96	-2.17	0.55	0.894321
9159	dm3.chr3R	4,536,803 – 4,536,942	- - - intron="intron;ID=intron_FBgn0037612:2_FBgn0037612:3;Name=CG8112-in;Parent=FBtr0081904;parent_type=mRNA" - - - -	12560	4,536,803 – 4,536,908	+	11	111	75.77	-2.04	0.58	0.990856
9159	dm3.chr3R	4,536,803 – 4,536,942		12561	4,536,831 – 4,536,942	+	9	118	71.03	-0.99	0.54	0.808132
9160	dm3.chr3R	4,564,816 – 4,564,876	- - - intron="intron;ID=intron_FBgn0037623:3_FBgn0037623:2;Name=CG9801-in;Parent=FBtr0081945;parent_type=mRNA" - - - -	12562	4,564,816 – 4,564,876	-	8	61	83.99	-2.66	0.70	0.988381
9161	dm3.chr3R	4,571,043 – 4,571,143	- - - intron="intron;ID=intron_FBgn0037623:3_FBgn0037623:2;Name=CG9801-in;Parent=FBtr0081945;parent_type=mRNA" - - - -	12563	4,571,043 – 4,571,143	-	5	100	94.69	-1.38	0.89	0.500000
9162	dm3.chr3R	4,574,319 – 4,574,410	- - - intron="intron;ID=intron_FBgn0037624:1_FBgn0037624:2;Name=CG8223-in;Parent=FBtr0081915;parent_type=mRNA" - - - -	12564	4,574,319 – 4,574,410	-	7	95	79.34	-2.28	0.39	0.537954
9163	dm3.chr3R	4,578,076 – 4,578,175	- - - - - - - -	12565	4,578,076 – 4,578,175	-	10	108	64.19	-1.23	0.41	0.847531
9164	dm3.chr3R	4,581,939 – 4,582,031	- - - intron="intron;ID=intron_FBgn0037625:3_FBgn0037625:2;Name=CG11768-in;Parent=FBtr0081943,FBtr0302489;parent_type=mRNA" - - - -	12566	4,581,939 – 4,582,031	-	6	99	83.56	-2.57	0.54	0.853102
9165	dm3.chr3R	4,588,067 – 4,588,170	- - - intron="intron;ID=intron_FBgn0037625:3_FBgn0037625:2;Name=CG11768-in;Parent=FBtr0081943,FBtr0302489;parent_type=mRNA" - - - -	12567	4,588,067 – 4,588,170	+	6	130	64.50	-1.93	0.38	0.888555
9166	dm3.chr3R	4,598,648 – 4,598,722	- - - - - - - -	12568	4,598,648 – 4,598,722	+	5	77	63.73	-0.03	0.67	0.586273
9167	dm3.chr3R	4,604,133 – 4,604,248	- - CDS="CDS;ID=CDS_FBgn0053191:1_117;Name=CG33191-cds;Parent=FBtr0081941;parent_type=mRNA" intron="intron;ID=intron_FBgn0046874:5_FBgn0046874:4;Name=Pif1B-in;Parent=FBtr0091717;parent_type=mRNA" - - - -	12569	4,604,133 – 4,604,248	-	12	120	66.23	-0.77	0.47	0.831837
9168	dm3.chr3R	4,612,589 – 4,612,679	- - - - - - - -	12570	4,612,589 – 4,612,679	+	11	111	72.48	-1.70	0.43	0.701229
9169	dm3.chr3R	4,612,868 – 4,612,918	- - - intron="intron;ID=intron_FBgn0261015:13_FBgn0261015:12;Name=Pif1A-in;Parent=FBtr0301876,FBtr0301877;parent_type=mRNA" - - - -	12571	4,612,868 – 4,612,918	+	5	50	94.80	-1.57	0.95	0.866894
9169	dm3.chr3R	4,612,868 – 4,612,918		12572	4,612,868 – 4,612,918	-	5	50	94.80	-2.16	0.97	0.979270
9170	dm3.chr3R	4,615,476 – 4,615,657	- - - intron="intron;ID=intron_FBgn0261015:13_FBgn0261015:12;Name=Pif1A-in;Parent=FBtr0301876,FBtr0301877;parent_type=mRNA" - - - -	12573	4,615,476 – 4,615,657	+	6	183	90.43	-2.94	0.77	0.981742
9171	dm3.chr3R	4,623,464 – 4,623,559	- - CDS="CDS;ID=CDS_FBgn0261015:18_4;Name=Pif1A-cds;Parent=FBtr0304160;parent_type=mRNA" - - - - -	12574	4,623,464 – 4,623,559	+	8	107	67.35	-1.69	0.40	0.913081
9172	dm3.chr3R	4,662,765 – 4,662,871	- - CDS="CDS;ID=CDS_FBgn0262614:13_256;Name=pyd-cds;Parent=FBtr0305303;parent_type=mRNA" intron="intron;ID=intron_FBgn0262614:14_FBgn0262614:12;Name=pyd-in;Parent=FBtr0305293,FBtr0305294,FBtr0305295,FBtr0305298,FBtr0305301;parent_type=mRNA" - - - -	12575	4,662,765 – 4,662,871	+	3	106	72.33	-2.54	0.60	0.982153
9172	dm3.chr3R	4,662,765 – 4,662,871		12576	4,662,765 – 4,662,871	-	3	106	72.33	-1.96	0.62	0.907001
9173	dm3.chr3R	4,676,476 – 4,676,586	- - - - - - - -	12577	4,676,476 – 4,676,586	+	9	111	70.38	-1.15	0.44	0.510249
9174	dm3.chr3R	4,687,638 – 4,687,697	- - - intron="intron;ID=intron_FBgn0262614:22_FBgn0262614:20;Name=pyd-in;Parent=FBtr0305293;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAIZ01013645.1/4815-4875\|1.7e-10" - - -	12578	4,687,638 – 4,687,697	+	9	66	67.59	-0.41	0.75	0.898793
9174	dm3.chr3R	4,687,638 – 4,687,697		12579	4,687,638 – 4,687,697	-	9	66	67.59	-0.75	0.48	0.551389
9175	dm3.chr3R	4,688,649 – 4,688,791	FBnoncoding="tRNA;ID=FBtr0091521;Name=tRNA:R:85Cb-RA;Parent=FBgn0053551;Alias=CR31444-RA;Dbxref=FlyBase_Annotation_IDs:CR33551-RA;score_text=Weakly" tRNAscann="Arg_chr3R_trna8" - - "Rfam_10.0=RF00005;tRNA;AAJJ01004069.1/7732-7804\|4.2e-32" - - -	12580	4,688,649 – 4,688,791	+	4	159	77.39	-1.80	0.86	0.968554
9175	dm3.chr3R	4,688,649 – 4,688,791		12581	4,688,649 – 4,688,791	-	4	159	77.39	-2.55	0.82	0.994138
9176	dm3.chr3R	4,700,449 – 4,700,546	- - - - - - - -	12582	4,700,449 – 4,700,546	+	5	98	90.95	-2.08	0.85	0.907492
9176	dm3.chr3R	4,700,449 – 4,700,546	- - - - - - - -	12583	4,700,449 – 4,700,546	-	5	98	90.95	-2.06	0.83	0.870390
9177	dm3.chr3R	4,707,906 – 4,707,972	- - - intron="intron;ID=intron_FBgn0262614:29_FBgn0262614:28;Name=pyd-in;Parent=FBtr0305301;parent_type=mRNA" - - - -	12584	4,707,906 – 4,707,972	+	9	68	67.91	-1.47	0.43	0.915065
9178	dm3.chr3R	4,709,344 – 4,709,434	- - - intron="intron;ID=intron_FBgn0262614:29_FBgn0262614:28;Name=pyd-in;Parent=FBtr0305301;parent_type=mRNA" - - - -	12585	4,709,344 – 4,709,434	+	10	112	68.65	-1.66	0.38	0.741670
9179	dm3.chr3R	4,748,631 – 4,748,730	- - - intron="intron;ID=intron_FBgn0262614:29_FBgn0262614:28;Name=pyd-in;Parent=FBtr0305301;parent_type=mRNA" - - - -	12586	4,748,631 – 4,748,730	-	7	110	64.79	-0.19	0.56	0.665125
9180	dm3.chr3R	4,757,846 – 4,757,958	- - - - - - - -	12587	4,757,846 – 4,757,958	-	6	112	66.15	-2.91	0.21	0.927481
9181	dm3.chr3R	4,761,970 – 4,762,076	- - CDS="CDS;ID=CDS_CG10901:2_90;Name=osk-cds;Parent=FBtr0081956;parent_type=mRNA" - - - - -	12588	4,761,970 – 4,762,075	+	12	120	64.62	-2.42	0.26	0.948891
9181	dm3.chr3R	4,761,970 – 4,762,076		12589	4,761,971 – 4,762,076	+	12	120	64.68	-2.23	0.23	0.820236
9182	dm3.chr3R	4,762,218 – 4,762,321	- - CDS="CDS;ID=CDS_CG10901:3_90;Name=osk-cds;Parent=FBtr0081956;parent_type=mRNA" - - - - -	12590	4,762,218 – 4,762,314	-	6	119	54.71	-1.40	0.34	0.830760
9182	dm3.chr3R	4,762,218 – 4,762,321		12591	4,762,218 – 4,762,321	-	5	119	52.49	-2.38	0.46	0.999588
9183	dm3.chr3R	4,763,455 – 4,763,554	- - - - - - - -	12592	4,763,455 – 4,763,554	+	9	113	63.57	-3.28	0.29	0.998152
9184	dm3.chr3R	4,769,176 – 4,769,269	- - CDS="CDS;ID=CDS_FBgn0037644:3_230;Name=CG11964-cds;Parent=FBtr0082015;parent_type=mRNA" - - - - -	12593	4,769,176 – 4,769,269	+	14	108	70.98	-1.15	0.39	0.545564
9185	dm3.chr3R	4,772,390 – 4,772,483	- - - - - - - -	12594	4,772,390 – 4,772,483	-	7	95	63.73	-1.20	0.49	0.939608
9186	dm3.chr3R	4,780,904 – 4,780,960	- - - intron="intron;ID=intron_FBgn0037645:2_FBgn0037645:1;Name=CG11966-in;Parent=FBtr0082014;parent_type=mRNA" - - - -	12595	4,780,904 – 4,780,960	+	6	56	97.02	-0.62	1.04	0.683524
9187	dm3.chr3R	4,781,143 – 4,781,266	- - - intron="intron;ID=intron_FBgn0037645:2_FBgn0037645:1;Name=CG11966-in;Parent=FBtr0082014;parent_type=mRNA" - - - -	12596	4,781,143 – 4,781,238	+	8	113	77.76	-2.31	0.57	0.948389
				12597	4,781,143 – 4,781,238	-	8	113	77.76	-2.65	0.60	0.988109
				12598	4,781,172 – 4,781,266	-	6	97	72.28	-1.85	0.43	0.621620
9188	dm3.chr3R	4,799,966 – 4,800,121	- - - - - - - -	12599	4,799,966 – 4,800,121	-	5	168	76.79	-2.66	0.59	0.984656
9189	dm3.chr3R	4,805,185 – 4,805,297	- - - - - - - -	12600	4,805,185 – 4,805,297	+	8	117	73.68	-2.42	0.46	0.972747
9190	dm3.chr3R	4,806,429 – 4,806,525	- - - - - - - -	12601	4,806,429 – 4,806,525	-	8	100	61.19	-1.29	0.39	0.905543
9191	dm3.chr3R	4,815,365 – 4,815,479	- - CDS="CDS;ID=CDS_CG11970:3_32;Name=CG11970-cds;Parent=FBtr0081959;parent_type=mRNA" - - - - -	12602	4,815,365 – 4,815,479	-	6	114	79.69	-1.18	0.71	0.562736
9192	dm3.chr3R	4,827,662 – 4,827,718	- - - - - - - -	12603	4,827,662 – 4,827,718	+	6	58	75.73	-2.52	0.36	0.828804
9193	dm3.chr3R	4,829,233 – 4,829,327	- - - - - - - -	12604	4,829,233 – 4,829,327	+	11	108	68.49	-0.83	0.65	0.942370
9194	dm3.chr3R	4,836,541 – 4,836,609	- - CDS="CDS;ID=CDS_FBgn0037655:1_94;Name=CG11984-cds;Parent=FBtr0300747,FBtr0300748;parent_type=mRNA" - - - - -	12605	4,836,541 – 4,836,609	+	12	80	65.31	-0.74	0.42	0.500000
9195	dm3.chr3R	4,847,502 – 4,847,614	- - CDS="CDS;ID=CDS_FBgn0002932:2_16;Name=neur-cds;Parent=FBtr0082003;parent_type=mRNA" - - - - -	12606	4,847,502 – 4,847,614	-	13	118	73.94	-0.91	0.49	0.571443
9196	dm3.chr3R	4,857,881 – 4,857,975	- - - intron="intron;ID=intron_FBgn0002932:5_FBgn0002932:4;Name=neur-in;Parent=FBtr0082003,FBtr0082004;parent_type=mRNA" - - - -	12607	4,857,881 – 4,857,975	+	5	94	93.30	-1.49	0.91	0.731092
9197	dm3.chr3R	4,869,540 – 4,869,633	- - - intron="intron;ID=intron_CG18466:4_CG18466:2;Name=Nmdmc-in;Parent=FBtr0081997;parent_type=mRNA" - - - -	12608	4,869,540 – 4,869,633	-	7	106	64.84	-1.00	0.40	0.590728
9198	dm3.chr3R	4,872,778 – 4,872,876	- - - - - - - -	12609	4,872,778 – 4,872,876	-	6	105	76.59	-1.33	0.57	0.500000
9199	dm3.chr3R	4,879,173 – 4,879,265	- - - intron="intron;ID=intron_FBgn0037659:1_FBgn0037659:2;Name=JHDM1-in;Parent=FBtr0300691;parent_type=mRNA" - - - -	12610	4,879,173 – 4,879,265	-	6	97	73.02	-1.83	0.47	0.862320
9200	dm3.chr3R	4,879,814 – 4,879,934	- - - intron="intron;ID=intron_FBgn0037659:2_FBgn0037659:3;Name=JHDM1-in;Parent=FBtr0300691;parent_type=mRNA" - - - -	12611	4,879,814 – 4,879,934	+	6	120	75.00	-1.72	0.43	0.561131
9201	dm3.chr3R	4,880,105 – 4,880,195	- - - intron="intron;ID=intron_FBgn0037659:2_FBgn0037659:3;Name=JHDM1-in;Parent=FBtr0300691;parent_type=mRNA" - - - -	12612	4,880,105 – 4,880,195	-	12	93	83.04	-1.77	0.63	0.744958
9202	dm3.chr3R	4,881,384 – 4,881,478	- - - intron="intron;ID=intron_FBgn0037659:2_FBgn0037659:3;Name=JHDM1-in;Parent=FBtr0300691;parent_type=mRNA" - - - -	12613	4,881,384 – 4,881,478	+	8	127	73.69	-2.42	0.40	0.848321
9203	dm3.chr3R	4,888,338 – 4,888,444	- - - - - - - -	12614	4,888,338 – 4,888,444	-	7	107	66.79	-1.05	0.46	0.664727
9204	dm3.chr3R	4,896,676 – 4,896,729	- - CDS="CDS;ID=CDS_FBgn0003165:3_185;Name=pum-cds;Parent=FBtr0081990,FBtr0081991,FBtr0081992,FBtr0081994;parent_type=mRNA" - - - - -	12615	4,896,676 – 4,896,729	-	10	58	74.61	-1.65	0.64	0.968038
9205	dm3.chr3R	4,898,316 – 4,898,416	- - CDS="CDS;ID=CDS_FBgn0003165:5_253;Name=pum-cds;Parent=FBtr0305197;parent_type=mRNA" - - - - -	12616	4,898,316 – 4,898,416	+	5	102	59.59	-0.90	0.46	0.795719
9206	dm3.chr3R	4,909,104 – 4,909,210	- - - intron="intron;ID=intron_FBgn0003165:8_FBgn0003165:7;Name=pum-in;Parent=FBtr0081994;parent_type=mRNA" - - - -	12617	4,909,104 – 4,909,210	+	11	119	79.44	-1.19	0.66	0.583109
9206	dm3.chr3R	4,909,104 – 4,909,210		12618	4,909,104 – 4,909,210	-	11	119	79.44	-1.41	0.72	0.864738
9207	dm3.chr3R	4,914,032 – 4,914,143	- - - intron="intron;ID=intron_FBgn0003165:8_FBgn0003165:7;Name=pum-in;Parent=FBtr0081994;parent_type=mRNA" - - - -	12619	4,914,032 – 4,914,143	-	5	114	71.00	-0.75	0.69	0.643526
9208	dm3.chr3R	4,919,025 – 4,919,183	- - - intron="intron;ID=intron_FBgn0003165:8_FBgn0003165:7;Name=pum-in;Parent=FBtr0081994;parent_type=mRNA" - - - -	12620	4,919,025 – 4,919,144	-	8	120	63.89	-1.04	0.38	0.605959
9208	dm3.chr3R	4,919,025 – 4,919,183		12621	4,919,065 – 4,919,183	-	6	120	82.47	-2.05	0.53	0.596104
9209	dm3.chr3R	4,925,090 – 4,925,196	- - - intron="intron;ID=intron_FBgn0003165:10_FBgn0003165:8;Name=pum-in;Parent=FBtr0081994;parent_type=mRNA" - - - -	12622	4,925,090 – 4,925,196	-	8	116	73.68	-2.30	0.33	0.695417
9210	dm3.chr3R	4,935,733 – 4,935,823	- - - intron="intron;ID=intron_FBgn0003165:10_FBgn0003165:8;Name=pum-in;Parent=FBtr0081994;parent_type=mRNA" - - - -	12623	4,935,733 – 4,935,823	-	12	114	78.76	-0.94	0.71	0.545182
9211	dm3.chr3R	4,938,048 – 4,938,145	- - - intron="intron;ID=intron_FBgn0003165:10_FBgn0003165:8;Name=pum-in;Parent=FBtr0081994;parent_type=mRNA" - - - -	12624	4,938,048 – 4,938,145	-	12	121	68.50	-0.73	0.59	0.851217
9212	dm3.chr3R	4,942,801 – 4,942,907	- - - intron="intron;ID=intron_FBgn0003165:10_FBgn0003165:8;Name=pum-in;Parent=FBtr0081994;parent_type=mRNA" - - - -	12625	4,942,801 – 4,942,907	-	5	107	88.91	-1.86	0.73	0.519794
9213	dm3.chr3R	4,955,974 – 4,956,060	- - - intron="intron;ID=intron_FBgn0003165:10_FBgn0003165:8;Name=pum-in;Parent=FBtr0081994;parent_type=mRNA" - - - -	12626	4,955,974 – 4,956,060	-	7	88	81.58	-1.16	0.74	0.558433
9214	dm3.chr3R	4,967,082 – 4,967,133	- - - intron="intron;ID=intron_FBgn0003165:10_FBgn0003165:9;Name=pum-in;Parent=FBtr0305197;parent_type=mRNA" - - - -	12627	4,967,082 – 4,967,133	+	5	51	99.22	-0.85	1.01	0.608657
9215	dm3.chr3R	4,971,777 – 4,971,886	- - - intron="intron;ID=intron_FBgn0003165:10_FBgn0003165:9;Name=pum-in;Parent=FBtr0305197;parent_type=mRNA" - - - -	12628	4,971,777 – 4,971,886	+	7	119	67.51	-1.29	0.51	0.852481
9216	dm3.chr3R	4,972,576 – 4,972,724	- - - intron="intron;ID=intron_FBgn0003165:10_FBgn0003165:9;Name=pum-in;Parent=FBtr0305197;parent_type=mRNA" - - - -	12629	4,972,576 – 4,972,692	-	5	116	99.14	-1.06	0.97	0.518495
9216	dm3.chr3R	4,972,576 – 4,972,724		12630	4,972,614 – 4,972,724	-	5	110	99.09	-1.05	0.99	0.636245
9217	dm3.chr3R	4,973,441 – 4,973,549	- - - intron="intron;ID=intron_FBgn0003165:10_FBgn0003165:9;Name=pum-in;Parent=FBtr0305197;parent_type=mRNA" - - - -	12631	4,973,441 – 4,973,549	-	6	124	86.29	-2.07	0.76	0.882334
9218	dm3.chr3R	4,973,650 – 4,973,748	- - - intron="intron;ID=intron_FBgn0003165:10_FBgn0003165:9;Name=pum-in;Parent=FBtr0305197;parent_type=mRNA" - - - -	12632	4,973,650 – 4,973,748	-	5	98	72.74	-1.17	0.70	0.888665
9219	dm3.chr3R	4,974,587 – 4,974,646	- - - intron="intron;ID=intron_FBgn0003165:10_FBgn0003165:9;Name=pum-in;Parent=FBtr0305197;parent_type=mRNA" - - - -	12633	4,974,587 – 4,974,646	-	7	62	71.14	-1.96	0.45	0.953140
9220	dm3.chr3R	4,982,899 – 4,983,006	- - CDS="CDS;ID=CDS_FBgn0003165:10_253;Name=pum-cds;Parent=FBtr0305197;parent_type=mRNA" - - - - -	12634	4,982,899 – 4,983,000	-	13	111	79.49	-1.50	0.68	0.914190
9220	dm3.chr3R	4,982,899 – 4,983,006		12635	4,982,905 – 4,983,006	-	13	114	76.00	-1.80	0.62	0.973585
9221	dm3.chr3R	4,993,271 – 4,993,362	- - - - - - - -	12636	4,993,271 – 4,993,362	+	4	95	89.96	-1.35	0.86	0.500000
9222	dm3.chr3R	4,995,465 – 4,995,555	- - - - - - - -	12637	4,995,465 – 4,995,555	+	5	105	62.28	-0.98	0.51	0.835936
9223	dm3.chr3R	4,996,889 – 4,996,988	- - - - - - - -	12638	4,996,889 – 4,996,988	+	5	99	92.36	-1.85	0.84	0.740971
9223	dm3.chr3R	4,996,889 – 4,996,988	- - - - - - - -	12639	4,996,889 – 4,996,988	-	5	99	92.36	-1.60	0.86	0.636476
9224	dm3.chr3R	5,003,443 – 5,003,584	- - CDS="CDS;ID=CDS_FBgn0037662:2_252;Name=CG11997-cds;Parent=FBtr0081972;parent_type=mRNA" - - - - -	12640	5,003,443 – 5,003,533	+	12	100	71.56	-0.82	0.51	0.679857
9224	dm3.chr3R	5,003,443 – 5,003,584		12641	5,003,493 – 5,003,584	+	10	97	67.05	-1.49	0.33	0.637133
9225	dm3.chr3R	5,011,141 – 5,011,211	- - - - - - - -	12642	5,011,141 – 5,011,211	+	5	70	82.51	-2.16	0.68	0.893510
9225	dm3.chr3R	5,011,141 – 5,011,211	- - - - - - - -	12643	5,011,141 – 5,011,211	-	5	70	82.51	-2.07	0.66	0.824379
9226	dm3.chr3R	5,012,540 – 5,012,652	- - - - - - - -	12644	5,012,540 – 5,012,652	+	3	112	88.45	-2.30	0.79	0.883203
9227	dm3.chr3R	5,014,246 – 5,014,390	- - - - - - - -	12645	5,014,246 – 5,014,390	+	8	163	60.50	-2.10	0.28	0.954479
9227	dm3.chr3R	5,014,246 – 5,014,390	- - - - - - - -	12646	5,014,246 – 5,014,390	-	8	163	60.50	-1.69	0.27	0.769874
9228	dm3.chr3R	5,022,562 – 5,022,704	- - - - - - - -	12647	5,022,562 – 5,022,670	+	7	120	65.08	-1.53	0.33	0.642164
				12648	5,022,593 – 5,022,704	+	7	118	67.35	-2.71	0.32	0.986440
				12649	5,022,593 – 5,022,704	-	7	118	67.35	-2.51	0.31	0.966159
9229	dm3.chr3R	5,031,251 – 5,031,345	- - - - - - - -	12650	5,031,251 – 5,031,345	+	11	110	51.70	-1.80	0.14	0.604625
9230	dm3.chr3R	5,049,796 – 5,049,949	- - - intron="intron;ID=intron_FBgn0003165:16_FBgn0003165:15;Name=pum-in;Parent=FBtr0081993;parent_type=mRNA" - - - -	12651	5,049,796 – 5,049,949	+	6	174	75.79	-1.84	0.50	0.725022
9231	dm3.chr3R	5,057,623 – 5,057,714	- - - - - - - -	12652	5,057,623 – 5,057,714	+	4	116	73.87	-2.35	0.53	0.942181
9231	dm3.chr3R	5,057,623 – 5,057,714	- - - - - - - -	12653	5,057,623 – 5,057,714	-	4	116	73.87	-1.57	0.67	0.860174
9232	dm3.chr3R	5,061,392 – 5,061,443	- - - intron="intron;ID=intron_FBgn0003165:19_FBgn0003165:18;Name=pum-in;Parent=FBtr0081992;parent_type=mRNA" - - - -	12654	5,061,392 – 5,061,443	+	4	57	54.82	-2.58	0.24	0.915003
9233	dm3.chr3R	5,062,526 – 5,062,620	- - - - - - - -	12655	5,062,526 – 5,062,620	+	5	98	94.49	-1.82	0.85	0.670181
9234	dm3.chr3R	5,082,896 – 5,082,991	- - - intron="intron;ID=intron_FBgn0037668:2_FBgn0037668:1;Name=CG16736-in;Parent=FBtr0081985;parent_type=mRNA" - - - -	12656	5,082,896 – 5,082,991	+	3	95	95.79	-3.94	1.01	0.998857
9234	dm3.chr3R	5,082,896 – 5,082,991		12657	5,082,896 – 5,082,991	-	3	95	95.79	-1.66	1.01	0.956620
9235	dm3.chr3R	5,085,747 – 5,085,864	- - CDS="CDS;ID=CDS_FBgn0037670:5_177;Name=CG8436-cds;Parent=FBtr0081977;parent_type=mRNA" - - - - -	12658	5,085,747 – 5,085,864	+	7	117	72.69	-1.36	0.47	0.750141
9235	dm3.chr3R	5,085,747 – 5,085,864		12659	5,085,747 – 5,085,864	-	7	117	72.69	-1.46	0.47	0.816183
9236	dm3.chr3R	5,099,720 – 5,099,778	- - - - - - - -	12660	5,099,720 – 5,099,778	+	9	67	71.36	-2.92	0.20	0.803623
9236	dm3.chr3R	5,099,720 – 5,099,778	- - - - - - - -	12661	5,099,720 – 5,099,778	-	9	67	71.36	-2.15	0.29	0.669862
9237	dm3.chr3R	5,118,563 – 5,118,672	- - - - - - - -	12662	5,118,563 – 5,118,672	-	9	120	70.40	-1.14	0.59	0.853070
9238	dm3.chr3R	5,127,214 – 5,127,306	- - - intron="intron;ID=intron_FBgn0037676:4_FBgn0037676:2;Name=CG8861-in;Parent=FBtr0301210;parent_type=mRNA" - - - -	12663	5,127,214 – 5,127,306	+	6	113	72.68	-0.92	0.68	0.629472
9239	dm3.chr3R	5,144,502 – 5,144,593	- - - intron="intron;ID=intron_FBgn0037676:4_FBgn0037676:2;Name=CG8861-in;Parent=FBtr0301210;parent_type=mRNA" - - - -	12664	5,144,502 – 5,144,593	-	8	100	56.64	-0.99	0.34	0.741322
9240	dm3.chr3R	5,148,317 – 5,148,419	- - - intron="intron;ID=intron_FBgn0037676:4_FBgn0037676:2;Name=CG8861-in;Parent=FBtr0301210;parent_type=mRNA" - - - -	12665	5,148,317 – 5,148,419	+	5	111	88.98	-1.17	0.88	0.512274
9241	dm3.chr3R	5,149,045 – 5,149,165	- - - intron="intron;ID=intron_FBgn0037676:4_FBgn0037676:2;Name=CG8861-in;Parent=FBtr0301210;parent_type=mRNA" - - - -	12666	5,149,045 – 5,149,136	+	5	92	71.56	-1.74	0.54	0.931551
				12667	5,149,045 – 5,149,136	-	5	92	71.56	-2.43	0.47	0.981601
				12668	5,149,075 – 5,149,165	-	5	93	70.59	-1.25	0.49	0.565333
9242	dm3.chr3R	5,150,286 – 5,150,377	- - - intron="intron;ID=intron_FBgn0037676:4_FBgn0037676:2;Name=CG8861-in;Parent=FBtr0301210;parent_type=mRNA" - - - -	12669	5,150,286 – 5,150,377	+	7	105	59.26	-1.35	0.33	0.740225
9242	dm3.chr3R	5,150,286 – 5,150,377		12670	5,150,286 – 5,150,377	-	7	105	59.26	-1.12	0.35	0.644749
9243	dm3.chr3R	5,165,189 – 5,165,262	- - - - - - - -	12671	5,165,189 – 5,165,262	+	6	73	81.64	-1.41	0.71	0.660887
9244	dm3.chr3R	5,167,646 – 5,167,737	- - - - - - - -	12672	5,167,646 – 5,167,737	-	5	91	96.92	-2.36	0.92	0.959008
9245	dm3.chr3R	5,169,856 – 5,170,020	- - - intron="intron;ID=intron_CG33936:16_CG33936:11;Name=CG33936-in;Parent=FBtr0091942;parent_type=mRNA" - - - -	12673	5,169,856 – 5,170,020	-	5	164	84.69	-2.03	0.68	0.779074
9246	dm3.chr3R	5,170,853 – 5,170,955	- - - intron="intron;ID=intron_CG33936:16_CG33936:11;Name=CG33936-in;Parent=FBtr0091942;parent_type=mRNA" - - - -	12674	5,170,853 – 5,170,955	+	5	102	96.47	-1.42	0.93	0.665386
9246	dm3.chr3R	5,170,853 – 5,170,955		12675	5,170,853 – 5,170,955	-	5	102	96.47	-1.54	0.92	0.704675
9247	dm3.chr3R	5,175,950 – 5,176,050	- - - intron="intron;ID=intron_CG33936:16_CG33936:11;Name=CG33936-in;Parent=FBtr0091942;parent_type=mRNA" - - - -	12676	5,175,950 – 5,176,050	+	6	103	84.42	-0.93	0.86	0.546873
9248	dm3.chr3R	5,178,783 – 5,178,835	- - - intron="intron;ID=intron_CG33936:16_CG33936:11;Name=CG33936-in;Parent=FBtr0091942;parent_type=mRNA" - - - -	12677	5,178,783 – 5,178,835	-	5	52	83.27	-1.68	0.74	0.788899
9249	dm3.chr3R	5,184,062 – 5,184,161	- - - - - - - -	12678	5,184,062 – 5,184,161	+	15	124	73.36	-1.18	0.58	0.824945
9250	dm3.chr3R	5,210,059 – 5,210,163	- - - - - - - -	12679	5,210,059 – 5,210,163	-	3	106	68.63	-1.42	0.58	0.567351
9251	dm3.chr3R	5,212,360 – 5,212,423	- - - - - - - -	12680	5,212,360 – 5,212,423	+	6	64	71.18	-1.36	0.53	0.858345
9252	dm3.chr3R	5,212,766 – 5,212,879	- - - - - - - -	12681	5,212,766 – 5,212,879	+	7	121	73.33	-1.32	0.47	0.529868
9253	dm3.chr3R	5,220,943 – 5,221,035	- - - - - - - -	12682	5,220,943 – 5,221,035	+	5	107	72.03	-1.12	0.64	0.804831
9254	dm3.chr3R	5,252,314 – 5,252,437	- - - intron="intron;ID=intron_FBgn0026188:4_FBgn0026188:6;Name=ps-in;Parent=FBtr0111027,FBtr0302695;parent_type=mRNA" - - - -	12683	5,252,314 – 5,252,412	-	5	105	77.33	-1.76	0.66	0.878286
				12684	5,252,342 – 5,252,437	+	5	102	77.51	-2.76	0.46	0.939984
				12685	5,252,342 – 5,252,437	-	5	102	77.51	-1.93	0.57	0.793989
9255	dm3.chr3R	5,253,080 – 5,253,170	- - - intron="intron;ID=intron_FBgn0026188:4_FBgn0026188:6;Name=ps-in;Parent=FBtr0111027,FBtr0302695;parent_type=mRNA" - - - -	12686	5,253,080 – 5,253,170	+	5	94	81.88	-1.29	0.82	0.737180
9256	dm3.chr3R	5,256,421 – 5,256,514	- - - intron="intron;ID=intron_FBgn0026188:5_FBgn0026188:6;Name=ps-in;Parent=FBtr0302694;parent_type=mRNA" - - - -	12687	5,256,421 – 5,256,514	+	6	117	73.26	-3.48	0.54	0.998951
9257	dm3.chr3R	5,269,469 – 5,269,541	- - - intron="intron;ID=intron_FBgn0026188:10_FBgn0026188:12;Name=ps-in;Parent=FBtr0302691;parent_type=mRNA" - - - -	12688	5,269,469 – 5,269,541	+	11	78	75.79	-1.18	0.59	0.634453
9258	dm3.chr3R	5,271,517 – 5,271,608	- - CDS="CDS;ID=CDS_FBgn0026188:13_91;Name=ps-cds;Parent=FBtr0111032;parent_type=mRNA" - - - - -	12689	5,271,517 – 5,271,608	+	13	91	76.05	-1.65	0.37	0.500000
9259	dm3.chr3R	5,279,815 – 5,279,867	- - - - - - - -	12690	5,279,815 – 5,279,867	+	11	52	100.00	-1.93	1.00	0.959989
9259	dm3.chr3R	5,279,815 – 5,279,867	- - - - - - - -	12691	5,279,815 – 5,279,867	-	11	52	100.00	-1.02	1.00	0.646390
9260	dm3.chr3R	5,283,422 – 5,283,513	- - - - - - - -	12692	5,283,422 – 5,283,513	+	7	96	87.59	-2.02	0.82	0.922655
9260	dm3.chr3R	5,283,422 – 5,283,513	- - - - - - - -	12693	5,283,422 – 5,283,513	-	7	96	87.59	-2.25	0.64	0.687541
9261	dm3.chr3R	5,284,442 – 5,284,496	- - CDS="CDS;ID=CDS_CG9363:2_90;Name=CG9363-cds;Parent=FBtr0082043;parent_type=mRNA" - - - - -	12694	5,284,442 – 5,284,496	-	15	54	90.09	-2.75	0.68	0.963345
9262	dm3.chr3R	5,299,550 – 5,299,657	- - - intron="intron;ID=intron_CG16779:2_CG16779:3;Name=CG16779-in;Parent=FBtr0082125;parent_type=mRNA" - - - -	12695	5,299,550 – 5,299,657	+	8	113	69.84	-1.19	0.68	0.971020
9262	dm3.chr3R	5,299,550 – 5,299,657		12696	5,299,550 – 5,299,657	-	8	113	69.84	-0.74	0.62	0.791441
9263	dm3.chr3R	5,308,190 – 5,308,281	- - - - - - - -	12697	5,308,190 – 5,308,281	-	4	91	88.46	-1.78	0.80	0.697042
9264	dm3.chr3R	5,316,823 – 5,316,924	- - - - - - - -	12698	5,316,823 – 5,316,924	+	7	103	80.46	-2.36	0.72	0.989636
9265	dm3.chr3R	5,320,318 – 5,320,414	- - - - - - - -	12699	5,320,318 – 5,320,414	-	6	96	70.37	-1.85	0.59	0.986944
9266	dm3.chr3R	5,343,617 – 5,343,767	- - - intron="intron;ID=intron_FBgn0037702:2_FBgn0037702:3;Name=CG8176-in;Parent=FBtr0082065,FBtr0113207;parent_type=mRNA" - - - -	12700	5,343,617 – 5,343,767	+	9	163	76.63	-1.64	0.49	0.724566
9267	dm3.chr3R	5,353,000 – 5,353,060	- - - - - - - -	12701	5,353,000 – 5,353,060	+	6	60	70.36	-1.40	0.56	0.940393
9268	dm3.chr3R	5,354,747 – 5,354,837	- - - intron="intron;ID=intron_FBgn0000244:5_FBgn0000244:1;Name=by-in;Parent=FBtr0082119;parent_type=mRNA" - - - -	12702	5,354,747 – 5,354,837	-	7	97	74.34	-2.28	0.63	0.987852
9269	dm3.chr3R	5,367,509 – 5,367,603	- - CDS="CDS;ID=CDS_FBgn0037705:7_172;Name=mura-cds;Parent=FBtr0082116,FBtr0082117;parent_type=mRNA" - - - - -	12703	5,367,509 – 5,367,603	-	6	97	84.00	-1.96	0.82	0.956084
9270	dm3.chr3R	5,413,074 – 5,413,145	- - CDS="CDS;ID=CDS_FBgn0037718:1_175;Name=P58IPK-cds;Parent=FBtr0082074;parent_type=mRNA" - - - - -	12704	5,413,074 – 5,413,145	+	12	76	74.16	-1.62	0.47	0.822895
9271	dm3.chr3R	5,426,803 – 5,426,898	- - - intron="intron;ID=intron_CG8312:1_CG8312:2;Name=CG8312-in;Parent=FBtr0082075;parent_type=mRNA" - - - -	12705	5,426,803 – 5,426,896	-	6	101	68.85	-1.40	0.42	0.589740
9271	dm3.chr3R	5,426,803 – 5,426,898		12706	5,426,806 – 5,426,898	-	6	101	68.28	-2.41	0.36	0.954656
9272	dm3.chr3R	5,462,767 – 5,462,874	- - CDS="CDS;ID=CDS_FBgn0003334:5_271;Name=Scm-cds;Parent=FBtr0306008;parent_type=mRNA" - - - - -	12707	5,462,767 – 5,462,874	+	6	107	60.90	-1.20	0.38	0.797462
9272	dm3.chr3R	5,462,767 – 5,462,874		12708	5,462,767 – 5,462,874	-	6	107	60.90	-1.69	0.42	0.983872
9273	dm3.chr3R	5,476,924 – 5,476,976	- - - - - - - -	12709	5,476,924 – 5,476,976	+	4	55	95.95	-2.02	0.93	0.927629
9274	dm3.chr3R	5,483,569 – 5,483,659	- - - intron="intron;ID=intron_FBgn0037726:14_FBgn0037726:13;Name=CG9492-in;Parent=FBtr0082100;parent_type=mRNA" - - - -	12710	5,483,569 – 5,483,659	-	8	96	50.71	-2.89	-0.00	0.724217
9275	dm3.chr3R	5,484,863 – 5,484,999	- - CDS="CDS;ID=CDS_FBgn0037726:14_102;Name=CG9492-cds;Parent=FBtr0082100;parent_type=mRNA" - - - - -	12711	5,484,863 – 5,484,959	+	15	120	84.73	-1.99	0.58	0.566429
				12712	5,484,863 – 5,484,959	-	15	120	84.73	-1.50	0.75	0.691895
				12713	5,484,879 – 5,484,999	+	15	120	86.19	-2.22	0.50	0.552906
				12714	5,484,879 – 5,484,999	-	15	120	86.19	-2.00	0.72	0.919690
9276	dm3.chr3R	5,486,142 – 5,486,255	- - CDS="CDS;ID=CDS_FBgn0037726:15_102;Name=CG9492-cds;Parent=FBtr0082100;parent_type=mRNA" - - - - -	12715	5,486,142 – 5,486,255	+	15	113	81.31	-1.54	0.57	0.769422
9277	dm3.chr3R	5,505,266 – 5,505,360	- - - - - - - -	12716	5,505,266 – 5,505,360	+	12	111	73.50	-0.33	0.81	0.715791
9278	dm3.chr3R	5,528,096 – 5,528,165	- - - - - - - -	12717	5,528,096 – 5,528,165	-	5	79	65.31	-1.04	0.60	0.894521
9279	dm3.chr3R	5,534,527 – 5,534,630	- - CDS="CDS;ID=CDS_CG9448:3_189;Name=trbd-cds;Parent=FBtr0082091;parent_type=mRNA" - - - - -	12718	5,534,527 – 5,534,630	-	5	117	65.10	-0.82	0.53	0.641028
9280	dm3.chr3R	5,536,273 – 5,536,370	- - - - - - - -	12719	5,536,273 – 5,536,370	+	3	97	98.63	-1.51	0.97	0.821905
9281	dm3.chr3R	5,539,324 – 5,539,523	- - - intron="intron;ID=intron_CG8374:2_CG8374:3;Name=dmt-in;Parent=FBtr0082086;parent_type=mRNA" - - - -	12720	5,539,324 – 5,539,414	+	12	109	52.88	-1.01	0.30	0.670298
				12721	5,539,324 – 5,539,414	-	12	109	52.88	-1.42	0.23	0.668332
				12722	5,539,381 – 5,539,484	+	12	115	77.62	-1.01	0.73	0.766503
				12723	5,539,414 – 5,539,523	+	10	111	67.84	-0.30	0.67	0.828173
				12724	5,539,414 – 5,539,523	-	10	111	67.84	-0.95	0.66	0.977456
9282	dm3.chr3R	5,565,908 – 5,565,972	- - - - - - - -	12725	5,565,908 – 5,565,972	+	5	64	85.11	-2.28	0.61	0.697448
9283	dm3.chr3R	5,604,300 – 5,604,392	- - - - - - - -	12726	5,604,300 – 5,604,392	+	15	108	64.40	-1.64	0.36	0.950605
9284	dm3.chr3R	5,612,574 – 5,612,635	- - - - - - - -	12727	5,612,574 – 5,612,635	-	4	69	64.57	-1.34	0.49	0.826012
9285	dm3.chr3R	5,616,734 – 5,616,836	- - CDS="CDS;ID=CDS_FBgn0037755:6_138;Name=CG12945-cds;Parent=FBtr0113214;parent_type=mRNA" - - - - -	12728	5,616,734 – 5,616,836	-	10	115	58.88	-1.22	0.34	0.846670
9286	dm3.chr3R	5,653,034 – 5,653,162	- - - - - - - -	12729	5,653,034 – 5,653,130	+	7	97	82.02	-1.61	0.69	0.786645
9286	dm3.chr3R	5,653,034 – 5,653,162	- - - - - - - -	12730	5,653,069 – 5,653,162	+	5	93	96.88	-1.36	0.94	0.657450
9287	dm3.chr3R	5,663,090 – 5,663,171	- - - intron="intron;ID=intron_CG12806:2_CG12806:3;Name=Teh1-in;Parent=FBtr0082151;parent_type=mRNA" - - - -	12731	5,663,090 – 5,663,171	+	12	96	84.03	-1.79	0.72	0.890781
9287	dm3.chr3R	5,663,090 – 5,663,171		12732	5,663,090 – 5,663,171	-	12	96	84.03	-1.20	0.89	0.874492
9288	dm3.chr3R	5,664,119 – 5,664,196	- - - intron="intron;ID=intron_CG12806:2_CG12806:3;Name=Teh1-in;Parent=FBtr0082151;parent_type=mRNA" - - - -	12733	5,664,119 – 5,664,196	-	3	87	61.15	-1.19	0.56	0.799620
9289	dm3.chr3R	5,676,693 – 5,676,808	- - - intron="intron;ID=intron_CG12806:2_CG12806:3;Name=Teh1-in;Parent=FBtr0082151;parent_type=mRNA" - - - -	12734	5,676,693 – 5,676,808	+	12	133	80.56	-1.16	0.68	0.586522
9289	dm3.chr3R	5,676,693 – 5,676,808		12735	5,676,693 – 5,676,808	-	12	133	80.56	-1.23	0.71	0.726942
9290	dm3.chr3R	5,678,322 – 5,678,386	- - - intron="intron;ID=intron_CG12806:2_CG12806:3;Name=Teh1-in;Parent=FBtr0082151;parent_type=mRNA" - - - -	12736	5,678,322 – 5,678,386	+	7	70	62.41	-1.55	0.31	0.579440
9291	dm3.chr3R	5,678,911 – 5,679,002	- - - intron="intron;ID=intron_CG12806:2_CG12806:3;Name=Teh1-in;Parent=FBtr0082151;parent_type=mRNA" - - - -	12737	5,678,911 – 5,679,002	+	6	105	67.24	-1.13	0.45	0.535172
9292	dm3.chr3R	5,680,980 – 5,681,070	- - - intron="intron;ID=intron_CG12806:2_CG12806:3;Name=Teh1-in;Parent=FBtr0082151;parent_type=mRNA" - - - -	12738	5,680,980 – 5,681,070	-	6	108	71.19	-1.25	0.56	0.736928
9293	dm3.chr3R	5,695,903 – 5,696,001	- - - - - - - -	12739	5,695,903 – 5,696,001	+	7	112	78.33	-1.81	0.52	0.641156
9293	dm3.chr3R	5,695,903 – 5,696,001	- - - - - - - -	12740	5,695,903 – 5,696,001	-	7	112	78.33	-2.17	0.78	0.990170
9294	dm3.chr3R	5,699,838 – 5,699,913	- - - - - - - -	12741	5,699,838 – 5,699,913	+	7	83	78.62	-0.94	0.75	0.547617
9294	dm3.chr3R	5,699,838 – 5,699,913	- - - - - - - -	12742	5,699,838 – 5,699,913	-	7	83	78.62	-2.53	0.76	0.995160
9295	dm3.chr3R	5,705,839 – 5,705,935	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12743	5,705,839 – 5,705,935	+	5	107	65.55	-1.18	0.47	0.702948
9296	dm3.chr3R	5,706,400 – 5,706,490	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12744	5,706,400 – 5,706,490	-	6	91	77.58	-1.78	0.56	0.676532
9297	dm3.chr3R	5,707,627 – 5,707,725	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12745	5,707,627 – 5,707,725	+	11	107	75.12	-1.69	0.70	0.985246
9297	dm3.chr3R	5,707,627 – 5,707,725		12746	5,707,627 – 5,707,725	-	11	107	75.12	-2.20	0.57	0.990740
9298	dm3.chr3R	5,712,161 – 5,712,274	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12747	5,712,161 – 5,712,274	+	4	113	67.12	-1.61	0.40	0.587806
9299	dm3.chr3R	5,719,026 – 5,719,105	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12748	5,719,026 – 5,719,105	+	10	95	82.72	-1.78	0.71	0.870803
9300	dm3.chr3R	5,731,765 – 5,731,881	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12749	5,731,765 – 5,731,881	+	11	116	82.07	-2.29	0.57	0.906519
9300	dm3.chr3R	5,731,765 – 5,731,881		12750	5,731,765 – 5,731,881	-	11	116	82.07	-2.36	0.64	0.966094
9301	dm3.chr3R	5,733,386 – 5,733,524	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12751	5,733,386 – 5,733,524	+	4	139	75.69	-2.88	0.64	0.995983
9302	dm3.chr3R	5,736,142 – 5,736,239	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12752	5,736,142 – 5,736,239	+	9	101	64.20	-1.71	0.26	0.629784
9303	dm3.chr3R	5,737,112 – 5,737,207	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12753	5,737,112 – 5,737,207	-	6	102	78.00	-2.91	0.37	0.905989
9304	dm3.chr3R	5,737,835 – 5,737,953	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12754	5,737,835 – 5,737,953	+	5	118	95.08	-2.04	0.86	0.813736
9304	dm3.chr3R	5,737,835 – 5,737,953		12755	5,737,835 – 5,737,953	-	5	118	95.08	-1.39	0.91	0.586973
9305	dm3.chr3R	5,751,945 – 5,752,045	- - - intron="intron;ID=intron_FBgn0250818:1_FBgn0250818:3;Name=CG34360-in;Parent=FBtr0112576,FBtr0114581,FBtr0114582;parent_type=mRNA" - - - -	12756	5,751,945 – 5,752,045	+	6	102	97.02	-1.33	0.95	0.696590
9305	dm3.chr3R	5,751,945 – 5,752,045		12757	5,751,945 – 5,752,045	-	6	102	97.02	-1.52	0.94	0.770368
9306	dm3.chr3R	5,772,084 – 5,772,194	- - - intron="intron;ID=intron_FBgn0250818:6_FBgn0250818:8;Name=CG34360-in;Parent=FBtr0114582;parent_type=mRNA" - - - -	12758	5,772,084 – 5,772,194	+	4	110	81.09	-1.66	0.75	0.807423
9307	dm3.chr3R	5,783,828 – 5,783,892	- - - - - - - -	12759	5,783,828 – 5,783,892	-	4	65	68.89	-1.41	0.62	0.931118
9308	dm3.chr3R	5,788,100 – 5,788,242	- - - - - - - -	12760	5,788,100 – 5,788,205	-	8	124	75.32	-1.74	0.55	0.775713
9308	dm3.chr3R	5,788,100 – 5,788,242	- - - - - - - -	12761	5,788,133 – 5,788,242	-	8	114	71.20	-1.96	0.40	0.872148
9309	dm3.chr3R	5,791,055 – 5,791,194	- - - - - - - -	12762	5,791,055 – 5,791,167	+	6	112	77.30	-1.53	0.71	0.936143
				12763	5,791,087 – 5,791,186	+	9	116	75.97	-2.36	0.72	0.995892
				12764	5,791,087 – 5,791,186	-	9	116	75.97	-1.51	0.52	0.614585
				12765	5,791,104 – 5,791,194	+	12	108	75.22	-1.95	0.67	0.992920
				12766	5,791,104 – 5,791,194	-	12	108	75.22	-1.74	0.59	0.970837
9310	dm3.chr3R	5,792,278 – 5,792,371	- - - - - - - -	12767	5,792,278 – 5,792,371	+	6	103	66.17	-2.45	0.26	0.628851
9311	dm3.chr3R	5,806,456 – 5,806,561	- - - - - - - -	12768	5,806,456 – 5,806,561	-	11	117	69.02	-2.20	0.39	0.984455
9312	dm3.chr3R	5,811,959 – 5,812,062	- - - - - - - -	12769	5,811,959 – 5,812,054	-	5	95	71.89	-0.61	0.69	0.561960
9312	dm3.chr3R	5,811,959 – 5,812,062	- - - - - - - -	12770	5,811,967 – 5,812,062	-	5	98	70.17	-0.81	0.65	0.745812
9313	dm3.chr3R	5,830,446 – 5,830,540	- - CDS="CDS;ID=CDS_FBgn0053208:8_94;Name=Mical-cds;Parent=FBtr0082210,FBtr0082212,FBtr0082208;parent_type=mRNA" - - - - -	12771	5,830,446 – 5,830,540	+	12	103	79.68	-1.41	0.62	0.709485
9313	dm3.chr3R	5,830,446 – 5,830,540		12772	5,830,446 – 5,830,540	-	12	103	79.68	-1.25	0.65	0.659558
9314	dm3.chr3R	5,836,866 – 5,836,960	- - CDS="CDS;ID=CDS_FBgn0053208:11_94;Name=Mical-cds;Parent=FBtr0082210,FBtr0082212;parent_type=mRNA" - - - - -	12773	5,836,866 – 5,836,960	+	10	106	68.70	-0.80	0.60	0.755655
9315	dm3.chr3R	5,840,998 – 5,841,118	- - CDS="CDS;ID=CDS_FBgn0053208:13_94;Name=Mical-cds;Parent=FBtr0082210,FBtr0082212,FBtr0082208;parent_type=mRNA" - - - - -	12774	5,840,998 – 5,841,118	+	13	120	81.47	-1.46	0.67	0.806006
9315	dm3.chr3R	5,840,998 – 5,841,118		12775	5,840,998 – 5,841,118	-	13	120	81.47	-1.47	0.60	0.630678
9316	dm3.chr3R	5,848,548 – 5,848,609	- - - - - - - -	12776	5,848,548 – 5,848,609	-	7	72	57.41	-1.74	0.65	0.999536
9317	dm3.chr3R	5,850,590 – 5,850,681	- - - - - - - -	12777	5,850,590 – 5,850,681	+	8	93	73.21	-0.89	0.77	0.897363
9318	dm3.chr3R	5,853,813 – 5,853,894	- - - intron="intron;ID=intron_FBgn0053208:28_FBgn0053208:27;Name=Mical-in;Parent=FBtr0082206,FBtr0082207,FBtr0082208,FBtr0082209,FBtr0273185;parent_type=mRNA" - - - -	12778	5,853,813 – 5,853,894	+	3	86	88.14	-1.73	0.91	0.899464
9319	dm3.chr3R	5,860,606 – 5,860,680	- - - intron="intron;ID=intron_FBgn0053208:28_FBgn0053208:27;Name=Mical-in;Parent=FBtr0082206,FBtr0082207,FBtr0082208,FBtr0082209,FBtr0273185;parent_type=mRNA" - - - -	12779	5,860,606 – 5,860,680	+	10	84	66.75	-1.96	0.25	0.608860
9320	dm3.chr3R	5,869,743 – 5,869,845	- - - intron="intron;ID=intron_FBgn0027524:3_FBgn0027524:4;Name=CG3909-in;Parent=FBtr0082172;parent_type=mRNA" - - - -	12780	5,869,743 – 5,869,845	+	13	104	67.71	-1.29	0.36	0.810485
9321	dm3.chr3R	5,874,417 – 5,874,509	- - - - - - - -	12781	5,874,417 – 5,874,509	+	3	94	96.45	-1.46	0.98	0.864379
9322	dm3.chr3R	5,903,895 – 5,904,015	- - - - - - - -	12782	5,903,895 – 5,904,015	-	6	121	69.52	-0.36	0.63	0.566875
9323	dm3.chr3R	5,916,815 – 5,916,947	FBnoncoding="pre_miRNA;ID=FBtr0304217;Name=mir-317-RM;Parent=FBgn0262378;Alias=CR42900-RM;Dbxref=FlyBase_Annotation_IDs:CR42900-RM,miRBase:MI0000429" - - - "Rfam_10.0=RF00720;mir-317;AAEU02000013.1/76417-76507\|1.1e-44" - - "mirBase_v16=dsi-mir-317\|1.4e-47"	12783	5,916,815 – 5,916,913	-	13	110	74.37	-0.89	0.56	0.700264
				12784	5,916,842 – 5,916,947	+	12	115	79.65	-2.59	0.85	0.997577
				12785	5,916,842 – 5,916,947	-	12	115	79.65	-1.98	0.71	0.981622
9324	dm3.chr3R	5,925,235 – 5,925,333	- - - - - - - -	12786	5,925,235 – 5,925,333	-	7	113	75.62	-1.61	0.53	0.760492
9325	dm3.chr3R	5,925,737 – 5,925,846	FBnoncoding="pre_miRNA;ID=FBtr0304361;Name=mir-277-RM;Parent=FBgn0262419;Alias=CR42968-RM;Dbxref=FlyBase_Annotation_IDs:CR42968-RM,miRBase:MI0000360" - - - "Rfam_10.0=RF00730;mir-277;AANI01014607.1/369282-369382\|8.1e-36" "Noncode_2.0=n178682_u177780_NW_045730_miRNA_Anopheles\|9.4e-11" "unique_Noncode_2.0=u177780_miRNA_Anopheles\|8.2e-11" "mirBase_v16=dme-mir-277\|1.9e-52"	12787	5,925,737 – 5,925,846	+	14	121	86.11	-4.16	0.90	0.999243
9326	dm3.chr3R	5,936,821 – 5,936,921	- - - - - - - -	12788	5,936,821 – 5,936,921	+	9	106	64.32	-2.26	0.45	0.998456
9326	dm3.chr3R	5,936,821 – 5,936,921	- - - - - - - -	12789	5,936,821 – 5,936,921	-	9	106	64.32	-1.32	0.35	0.728858
9327	dm3.chr3R	5,937,433 – 5,937,524	- - - - - - - -	12790	5,937,433 – 5,937,524	+	6	118	56.16	-1.09	0.48	0.949343
9328	dm3.chr3R	5,940,723 – 5,940,823	- - - intron="intron;ID=intron_CG3940:1_CG3940:2;Name=CG3940-in;Parent=FBtr0082179;parent_type=mRNA" - - - -	12791	5,940,723 – 5,940,823	+	6	109	69.47	-1.90	0.39	0.828152
9329	dm3.chr3R	5,963,977 – 5,964,068	- - - - - - - -	12792	5,963,977 – 5,964,068	-	7	92	79.75	-1.72	0.69	0.854182
9330	dm3.chr3R	5,971,979 – 5,972,069	- - - intron="intron;ID=intron_FBgn0002478:1_FBgn0002478:2;Name=Invadolysin-in;Parent=FBtr0082181;parent_type=mRNA" - - - -	12793	5,971,979 – 5,972,069	+	3	90	82.03	-1.78	0.80	0.810935
9331	dm3.chr3R	5,974,473 – 5,974,582	- - - intron="intron;ID=intron_FBgn0002478:1_FBgn0002478:2;Name=Invadolysin-in;Parent=FBtr0082181;parent_type=mRNA" - - - -	12794	5,974,473 – 5,974,582	-	7	111	60.57	-2.28	0.20	0.802025
9332	dm3.chr3R	5,980,620 – 5,980,717	- - - intron="intron;ID=intron_FBgn0002478:2_FBgn0002478:3;Name=Invadolysin-in;Parent=FBtr0082181;parent_type=mRNA" - - - -	12795	5,980,620 – 5,980,717	+	7	109	60.75	-2.03	0.36	0.983734
9333	dm3.chr3R	5,984,455 – 5,984,535	- - - - - - - -	12796	5,984,455 – 5,984,535	+	6	82	70.50	-2.51	0.31	0.884136
9333	dm3.chr3R	5,984,455 – 5,984,535	- - - - - - - -	12797	5,984,455 – 5,984,535	-	6	82	70.50	-2.96	0.44	0.997602
9334	dm3.chr3R	5,993,972 – 5,994,038	- - - intron="intron;ID=intron_FBgn0040238:10_FBgn0040238:9;Name=Best1-in;Parent=FBtr0082183,FBtr0114590,FBtr0306023;parent_type=mRNA" - - - -	12798	5,993,972 – 5,994,038	-	4	66	86.84	-2.45	0.75	0.934543
9335	dm3.chr3R	6,003,003 – 6,003,067	- - - intron="intron;ID=intron_FBgn0037796:10_FBgn0037796:9;Name=CG12814-in;Parent=FBtr0110786;parent_type=mRNA" - - - -	12799	6,003,003 – 6,003,067	+	5	76	73.90	-1.55	0.79	0.961734
9336	dm3.chr3R	6,017,716 – 6,017,808	- - - intron="intron;ID=intron_FBgn0004575:1_FBgn0004575:2;Name=Syn-in;Parent=FBtr0100472,FBtr0089477,FBtr0089475,FBtr0100471;parent_type=mRNA" - - - -	12800	6,017,716 – 6,017,808	+	8	107	69.65	-1.76	0.46	0.939265
9336	dm3.chr3R	6,017,716 – 6,017,808		12801	6,017,716 – 6,017,808	-	8	107	69.65	-1.62	0.63	0.989315
9337	dm3.chr3R	6,021,429 – 6,021,496	- - CDS="CDS;ID=CDS_FBgn0004575:4_105;Name=Syn-cds;Parent=FBtr0100472;parent_type=mRNA" - - - - -	12802	6,021,429 – 6,021,496	+	14	69	83.40	-1.52	0.61	0.625429
9338	dm3.chr3R	6,030,216 – 6,030,331	- - CDS="CDS;ID=CDS_FBgn0025879:1_259;Name=Timp-cds;Parent=FBtr0082245;parent_type=mRNA" intron="intron;ID=intron_FBgn0004575:8_FBgn0004575:9;Name=Syn-in;Parent=FBtr0100472,FBtr0089477,FBtr0089475,FBtr0100471;parent_type=mRNA" - - - -	12803	6,030,216 – 6,030,331	+	12	120	67.80	-0.73	0.44	0.576207
9339	dm3.chr3R	6,032,909 – 6,033,036	- - - intron="intron;ID=intron_FBgn0025879:5_FBgn0025879:4;Name=Timp-in;Parent=FBtr0082245;parent_type=mRNA" - - - -	12804	6,032,909 – 6,033,011	-	4	103	76.96	-2.04	0.63	0.869282
9339	dm3.chr3R	6,032,909 – 6,033,036		12805	6,032,931 – 6,033,036	-	5	105	78.06	-1.73	0.73	0.904684
9340	dm3.chr3R	6,049,801 – 6,049,913	- - - - - - - -	12806	6,049,801 – 6,049,913	+	3	120	74.72	-2.49	0.68	0.982395
9341	dm3.chr3R	6,050,787 – 6,050,888	- - - intron="intron;ID=intron_FBgn0083943:1_FBgn0083943:2;Name=CG34107-in;Parent=FBtr0110787;parent_type=mRNA" - - - -	12807	6,050,787 – 6,050,888	+	12	105	59.57	-0.86	0.32	0.571426
9342	dm3.chr3R	6,056,528 – 6,056,626	- - - intron="intron;ID=intron_FBgn0261928:3_FBgn0261928:4;Name=CG42795-in;Parent=FBtr0303602;parent_type=mRNA" - - - -	12808	6,056,528 – 6,056,626	-	6	109	67.41	-1.20	0.46	0.709021
9343	dm3.chr3R	6,071,031 – 6,071,177	- - CDS="CDS;ID=CDS_FBgn0261928:10_230;Name=CG42795-cds;Parent=FBtr0303601;parent_type=mRNA" - - - - -	12809	6,071,031 – 6,071,177	-	12	152	77.61	-2.00	0.38	0.652661
9344	dm3.chr3R	6,087,932 – 6,088,027	- - - - - - - -	12810	6,087,932 – 6,088,027	+	6	103	72.26	-2.14	0.71	0.996775
9345	dm3.chr3R	6,091,058 – 6,091,149	- - - intron="intron;ID=intron_FBgn0262617:1_FBgn0262617:4;Name=CG43143-in;Parent=FBtr0305351,FBtr0305354,FBtr0305356;parent_type=mRNA" - - - -	12811	6,091,058 – 6,091,149	+	6	98	76.81	-2.12	0.64	0.976268
9346	dm3.chr3R	6,096,034 – 6,096,150	- - - intron="intron;ID=intron_FBgn0262617:1_FBgn0262617:4;Name=CG43143-in;Parent=FBtr0305351,FBtr0305354,FBtr0305356;parent_type=mRNA" - - - -	12812	6,096,034 – 6,096,150	-	5	116	97.76	-2.04	0.92	0.899945
9347	dm3.chr3R	6,100,078 – 6,100,176	- - - intron="intron;ID=intron_FBgn0262617:1_FBgn0262617:4;Name=CG43143-in;Parent=FBtr0305351,FBtr0305354,FBtr0305356;parent_type=mRNA" - - - -	12813	6,100,078 – 6,100,176	-	10	108	66.46	-1.53	0.40	0.914525
9348	dm3.chr3R	6,131,797 – 6,131,868	- - CDS="CDS;ID=CDS_FBgn0262617:20_256;Name=CG43143-cds;Parent=FBtr0305355;parent_type=mRNA" - - - - -	12814	6,131,797 – 6,131,868	-	10	77	62.40	-0.85	0.39	0.589939
9349	dm3.chr3R	6,133,401 – 6,133,491	- - - - - - - -	12815	6,133,401 – 6,133,491	+	6	98	72.49	-0.79	0.67	0.659509
9350	dm3.chr3R	6,164,342 – 6,164,420	- - CDS="CDS;ID=CDS_CG12592:2_17;Name=CG12592-cds;Parent=FBtr0082233;parent_type=mRNA" - - - - -	12816	6,164,342 – 6,164,420	+	4	91	76.13	-1.53	0.62	0.541448
9351	dm3.chr3R	6,164,453 – 6,164,521	- - CDS="CDS;ID=CDS_CG12592:2_17;Name=CG12592-cds;Parent=FBtr0082233;parent_type=mRNA" - - - - -	12817	6,164,453 – 6,164,521	-	3	68	91.04	-1.48	0.94	0.837273
9352	dm3.chr3R	6,174,930 – 6,174,982	- - CDS="CDS;ID=CDS_CG31406:5_87;Name=CG31406-cds;Parent=FBtr0082236;parent_type=mRNA" - - - - -	12818	6,174,930 – 6,174,982	-	3	55	88.27	-1.27	0.99	0.903359
9353	dm3.chr3R	6,177,850 – 6,177,953	- - - intron="intron;ID=intron_CG4029:1_CG4029:2;Name=jumu-in;Parent=FBtr0082237;parent_type=mRNA" - - - -	12819	6,177,850 – 6,177,953	+	5	103	96.50	-1.66	0.88	0.596883
9354	dm3.chr3R	6,202,633 – 6,202,745	- - - intron="intron;ID=intron_FBgn0020379:14_FBgn0020379:13;Name=Rfx-in;Parent=FBtr0082238,FBtr0112895,FBtr0305995,FBtr0305996,FBtr0305997;parent_type=mRNA" - - - -	12820	6,202,633 – 6,202,745	-	3	112	93.43	-1.94	0.96	0.956302
9355	dm3.chr3R	6,218,803 – 6,218,906	- - - intron="intron;ID=intron_FBgn0259938:1_FBgn0259938:2;Name=cwo-in;Parent=FBtr0305152;parent_type=mRNA" - - - -	12821	6,218,803 – 6,218,906	-	7	112	73.82	-1.29	0.54	0.706516
9356	dm3.chr3R	6,219,169 – 6,219,259	- - - intron="intron;ID=intron_FBgn0259938:1_FBgn0259938:2;Name=cwo-in;Parent=FBtr0305152;parent_type=mRNA" - - - -	12822	6,219,169 – 6,219,259	+	6	96	72.71	-1.78	0.54	0.941099
9356	dm3.chr3R	6,219,169 – 6,219,259		12823	6,219,169 – 6,219,259	-	6	96	72.71	-2.01	0.55	0.976984
9357	dm3.chr3R	6,219,987 – 6,220,090	- - - intron="intron;ID=intron_FBgn0259938:1_FBgn0259938:2;Name=cwo-in;Parent=FBtr0305152;parent_type=mRNA" - - - -	12824	6,219,987 – 6,220,090	-	5	106	88.22	-3.27	0.77	0.994210
9358	dm3.chr3R	6,228,804 – 6,228,919	- - - - - - - -	12825	6,228,804 – 6,228,894	-	7	95	76.20	-1.84	0.55	0.869209
9358	dm3.chr3R	6,228,804 – 6,228,919	- - - - - - - -	12826	6,228,824 – 6,228,919	-	9	106	60.43	-1.33	0.29	0.631453
9359	dm3.chr3R	6,233,836 – 6,233,967	FBnoncoding="pre_miRNA;ID=FBtr0304283;Name=mir-994-RM;Parent=FBgn0262223;Alias=CR42930-RM;Dbxref=FlyBase_Annotation_IDs:CR42930-RM,miRBase:MI0005855" - - - "Rfam_10.0=RF00143;mir-6;AANI01017110.1/28671-28745\|8.7e-24" - - "mirBase_v16=dme-mir-994\|5.4e-47"	12827	6,233,836 – 6,233,932	+	12	114	76.96	-2.03	0.86	0.995284
9359	dm3.chr3R	6,233,836 – 6,233,967		12828	6,233,858 – 6,233,967	+	12	115	87.01	-5.38	0.98	0.998057
9360	dm3.chr3R	6,234,009 – 6,234,117	FBnoncoding="pre_miRNA;ID=FBtr0304367;Name=mir-318-RM;Parent=FBgn0262420;Alias=CR42971-RM;Dbxref=FlyBase_Annotation_IDs:CR42971-RM,miRBase:MI0000430" - - - "Rfam_10.0=RF00818;mir-318;AAGH01004927.1/3173-3240\|2.9e-29" - - "mirBase_v16=dse-mir-318\|2.3e-33"	12829	6,234,009 – 6,234,102	+	11	98	86.85	-4.25	0.90	0.999217
9360	dm3.chr3R	6,234,009 – 6,234,117		12830	6,234,024 – 6,234,117	+	11	98	84.06	-3.67	0.83	0.999104
9361	dm3.chr3R	6,235,131 – 6,235,230	- - CDS="CDS;ID=CDS_CG6342:9_62;Name=Irp-1B-cds;Parent=FBtr0082259;parent_type=mRNA" - - - - -	12831	6,235,131 – 6,235,230	-	15	99	76.26	-1.61	0.41	0.636238
9362	dm3.chr3R	6,242,431 – 6,242,522	- - - - - - - -	12832	6,242,431 – 6,242,522	-	5	91	87.14	-2.59	0.78	0.976705
9363	dm3.chr3R	6,251,304 – 6,251,399	- - - - - - - -	12833	6,251,304 – 6,251,399	-	7	103	61.29	-1.58	0.29	0.542259
9364	dm3.chr3R	6,259,656 – 6,259,749	- - - - - - - -	12834	6,259,656 – 6,259,749	+	11	118	89.42	-3.05	0.78	0.990254
9365	dm3.chr3R	6,266,358 – 6,266,449	- - - - - - - -	12835	6,266,358 – 6,266,449	+	10	120	87.10	-3.09	0.84	0.995758
9366	dm3.chr3R	6,269,330 – 6,269,423	- - - - - - - -	12836	6,269,330 – 6,269,423	-	10	110	76.89	-2.62	0.51	0.988119
9367	dm3.chr3R	6,271,198 – 6,271,299	- - - - - - - -	12837	6,271,198 – 6,271,299	+	4	102	83.09	-2.14	0.60	0.624598
9368	dm3.chr3R	6,273,471 – 6,273,669	- - - - - - - -	12838	6,273,471 – 6,273,573	-	12	115	87.37	-2.06	0.78	0.932020
				12839	6,273,493 – 6,273,610	-	12	120	97.48	-1.38	0.96	0.768047
				12840	6,273,573 – 6,273,669	-	7	102	82.50	-1.74	0.69	0.866158
9369	dm3.chr3R	6,275,519 – 6,275,613	- - - - - - - -	12841	6,275,519 – 6,275,613	+	6	94	69.83	-2.31	0.41	0.965562
9370	dm3.chr3R	6,279,296 – 6,279,441	- - - - - - - -	12842	6,279,296 – 6,279,441	+	7	158	75.11	-1.49	0.60	0.896726
9371	dm3.chr3R	6,286,375 – 6,286,444	- - - - - - - -	12843	6,286,375 – 6,286,444	-	7	80	65.46	-1.32	0.40	0.640303
9372	dm3.chr3R	6,287,008 – 6,287,079	- - - - - - - -	12844	6,287,008 – 6,287,079	+	6	80	58.63	-0.51	0.59	0.948871
9373	dm3.chr3R	6,296,554 – 6,296,671	- - - - - - - -	12845	6,296,554 – 6,296,671	-	12	119	96.49	-1.03	0.95	0.500000
9374	dm3.chr3R	6,300,075 – 6,300,170	- - - - - - - -	12846	6,300,075 – 6,300,170	+	8	108	79.76	-1.33	0.65	0.500000
9375	dm3.chr3R	6,305,318 – 6,305,414	- - - - - - - -	12847	6,305,318 – 6,305,414	+	3	97	70.11	-1.94	0.59	0.851538
9375	dm3.chr3R	6,305,318 – 6,305,414	- - - - - - - -	12848	6,305,318 – 6,305,414	-	3	97	70.11	-1.12	0.71	0.553776
9376	dm3.chr3R	6,306,839 – 6,306,956	- - - - - - - -	12849	6,306,839 – 6,306,956	-	8	117	88.81	-1.34	0.94	0.865547
9377	dm3.chr3R	6,308,728 – 6,308,820	- - - - - - - -	12850	6,308,728 – 6,308,820	-	9	99	71.05	-1.67	0.37	0.557456
9378	dm3.chr3R	6,310,801 – 6,310,900	- - - - - - - -	12851	6,310,801 – 6,310,900	+	12	115	85.19	-2.09	0.59	0.667488
9379	dm3.chr3R	6,312,147 – 6,312,372	- - - - - - - -	12852	6,312,147 – 6,312,241	-	5	97	79.56	-1.71	0.59	0.595208
				12853	6,312,207 – 6,312,321	+	7	117	74.20	-1.11	0.53	0.564021
				12854	6,312,207 – 6,312,321	-	7	117	74.20	-1.30	0.67	0.939632
				12855	6,312,241 – 6,312,350	+	12	120	83.87	-1.58	0.73	0.729858
				12856	6,312,241 – 6,312,350	-	12	120	83.87	-1.75	0.85	0.947665
				12857	6,312,281 – 6,312,372	+	12	115	92.31	-0.97	0.99	0.780809
				12858	6,312,281 – 6,312,372	-	12	115	92.31	-0.87	0.95	0.527853
9380	dm3.chr3R	6,322,847 – 6,323,001	- - - - - - - -	12859	6,322,847 – 6,322,964	+	11	119	98.94	-2.71	1.00	0.993793
9380	dm3.chr3R	6,322,847 – 6,323,001	- - - - - - - -	12860	6,322,887 – 6,323,001	+	11	118	87.33	-1.77	0.82	0.895296
9381	dm3.chr3R	6,324,751 – 6,324,884	- - - - - - - -	12861	6,324,751 – 6,324,854	+	10	115	77.39	-0.76	0.86	0.835568
9381	dm3.chr3R	6,324,751 – 6,324,884	- - - - - - - -	12862	6,324,791 – 6,324,884	+	8	118	75.64	-1.27	0.61	0.542969
9382	dm3.chr3R	6,332,073 – 6,332,166	- - - - - - - -	12863	6,332,073 – 6,332,166	-	12	120	86.15	-1.93	0.72	0.762118
9383	dm3.chr3R	6,333,017 – 6,333,112	- - - - - - - -	12864	6,333,017 – 6,333,112	+	6	95	76.69	-1.13	0.70	0.786001
9383	dm3.chr3R	6,333,017 – 6,333,112	- - - - - - - -	12865	6,333,017 – 6,333,112	-	6	95	76.69	-1.38	0.63	0.804739
9384	dm3.chr3R	6,333,825 – 6,333,930	- - - - - - - -	12866	6,333,825 – 6,333,930	+	5	109	91.11	-2.28	0.92	0.977600
9384	dm3.chr3R	6,333,825 – 6,333,930	- - - - - - - -	12867	6,333,825 – 6,333,930	-	5	109	91.11	-2.08	0.95	0.975951
9385	dm3.chr3R	6,337,356 – 6,337,473	- - - intron="intron;ID=intron_FBgn0001235:2_FBgn0001235:1;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301345,FBtr0301956;parent_type=mRNA" - - - -	12868	6,337,356 – 6,337,473	-	5	127	61.48	-2.08	0.39	0.977592
9386	dm3.chr3R	6,338,418 – 6,338,524	- - - intron="intron;ID=intron_FBgn0001235:3_FBgn0001235:2;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301345,FBtr0301956;parent_type=mRNA" - - - -	12869	6,338,418 – 6,338,524	-	12	120	79.65	-1.37	0.61	0.557199
9387	dm3.chr3R	6,346,634 – 6,346,773	- - - intron="intron;ID=intron_FBgn0001235:4_FBgn0001235:3;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301345,FBtr0301956;parent_type=mRNA" - - - -	12870	6,346,634 – 6,346,773	-	5	157	63.25	-0.28	0.58	0.554873
9388	dm3.chr3R	6,348,541 – 6,348,635	- - - intron="intron;ID=intron_FBgn0001235:5_FBgn0001235:4;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301345,FBtr0301956;parent_type=mRNA" - - - -	12871	6,348,541 – 6,348,635	-	9	115	62.55	-1.54	0.36	0.819074
9389	dm3.chr3R	6,354,456 – 6,354,547	- - - intron="intron;ID=intron_FBgn0001235:5_FBgn0001235:4;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301345,FBtr0301956;parent_type=mRNA" - - - -	12872	6,354,456 – 6,354,547	+	8	112	76.81	-3.10	0.52	0.995776
9389	dm3.chr3R	6,354,456 – 6,354,547		12873	6,354,456 – 6,354,547	-	8	112	76.81	-2.49	0.35	0.638229
9390	dm3.chr3R	6,355,930 – 6,356,010	- - - intron="intron;ID=intron_FBgn0001235:6_FBgn0001235:5;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301345,FBtr0301956;parent_type=mRNA" - - - -	12874	6,355,930 – 6,356,010	+	12	81	70.19	-0.63	0.50	0.528709
9391	dm3.chr3R	6,356,836 – 6,356,940	- - - intron="intron;ID=intron_FBgn0001235:6_FBgn0001235:5;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301345,FBtr0301956;parent_type=mRNA" - - - -	12875	6,356,836 – 6,356,940	+	12	115	91.33	-0.99	0.92	0.528982
9392	dm3.chr3R	6,358,230 – 6,358,347	- - - intron="intron;ID=intron_FBgn0001235:6_FBgn0001235:5;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301345,FBtr0301956;parent_type=mRNA" - - - -	12876	6,358,230 – 6,358,321	+	12	118	76.68	-1.81	0.56	0.878602
				12877	6,358,230 – 6,358,321	-	12	118	76.68	-1.16	0.64	0.642673
				12878	6,358,256 – 6,358,347	-	12	116	83.80	-1.61	0.71	0.678628
9393	dm3.chr3R	6,359,447 – 6,359,571	- - - intron="intron;ID=intron_FBgn0001235:6_FBgn0001235:5;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301345,FBtr0301956;parent_type=mRNA" - - - -	12879	6,359,447 – 6,359,571	+	10	133	61.46	-1.32	0.29	0.603501
9394	dm3.chr3R	6,363,695 – 6,363,810	- - - intron="intron;ID=intron_FBgn0001235:7_FBgn0001235:6;Name=hth-in;Parent=FBtr0082255;parent_type=mRNA" - - - -	12880	6,363,695 – 6,363,810	-	11	120	96.47	-2.31	0.92	0.961465
9395	dm3.chr3R	6,367,827 – 6,367,946	- - - intron="intron;ID=intron_FBgn0001235:7_FBgn0001235:6;Name=hth-in;Parent=FBtr0082255;parent_type=mRNA" - - - -	12881	6,367,827 – 6,367,946	+	10	129	93.75	-0.96	0.95	0.535199
9396	dm3.chr3R	6,377,133 – 6,377,231	- - - intron="intron;ID=intron_FBgn0001235:9_FBgn0001235:8;Name=hth-in;Parent=FBtr0082256,FBtr0301956;parent_type=mRNA" - - - -	12882	6,377,133 – 6,377,223	+	8	92	86.79	-1.59	0.74	0.583085
9396	dm3.chr3R	6,377,133 – 6,377,231		12883	6,377,133 – 6,377,231	+	8	98	86.43	-1.89	0.66	0.646747
9397	dm3.chr3R	6,381,190 – 6,381,308	- - - intron="intron;ID=intron_FBgn0001235:9_FBgn0001235:8;Name=hth-in;Parent=FBtr0082256,FBtr0301956;parent_type=mRNA" - - - -	12884	6,381,190 – 6,381,308	+	10	119	80.13	-2.18	0.70	0.984078
9397	dm3.chr3R	6,381,190 – 6,381,308		12885	6,381,190 – 6,381,308	-	10	119	80.13	-2.35	0.65	0.985452
9398	dm3.chr3R	6,382,290 – 6,382,375	- - - intron="intron;ID=intron_FBgn0001235:9_FBgn0001235:8;Name=hth-in;Parent=FBtr0082256,FBtr0301956;parent_type=mRNA" - - - -	12886	6,382,290 – 6,382,375	+	6	89	82.83	-1.96	0.63	0.756154
9399	dm3.chr3R	6,386,139 – 6,386,233	- - - intron="intron;ID=intron_FBgn0001235:9_FBgn0001235:8;Name=hth-in;Parent=FBtr0082256,FBtr0301956;parent_type=mRNA" - - - -	12887	6,386,139 – 6,386,233	+	12	120	72.77	-1.71	0.58	0.951059
9400	dm3.chr3R	6,388,021 – 6,388,135	- - - intron="intron;ID=intron_FBgn0001235:13_FBgn0001235:9;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301956;parent_type=mRNA" - - - -	12888	6,388,021 – 6,388,135	+	11	120	77.93	-1.92	0.50	0.870261
9400	dm3.chr3R	6,388,021 – 6,388,135		12889	6,388,021 – 6,388,135	-	11	120	77.93	-1.34	0.69	0.903547
9401	dm3.chr3R	6,390,119 – 6,390,215	- - - intron="intron;ID=intron_FBgn0001235:13_FBgn0001235:9;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301956;parent_type=mRNA" - - - -	12890	6,390,119 – 6,390,215	-	4	97	75.65	-2.53	0.54	0.967257
9402	dm3.chr3R	6,398,567 – 6,398,670	- - - intron="intron;ID=intron_FBgn0001235:13_FBgn0001235:9;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301956;parent_type=mRNA" - - - -	12891	6,398,567 – 6,398,670	+	5	117	86.03	-2.94	0.75	0.988796
9403	dm3.chr3R	6,405,690 – 6,405,780	- - - intron="intron;ID=intron_FBgn0001235:13_FBgn0001235:9;Name=hth-in;Parent=FBtr0082256,FBtr0082254,FBtr0082255,FBtr0082253,FBtr0301956;parent_type=mRNA" - - - -	12892	6,405,690 – 6,405,780	+	6	93	82.65	-1.59	0.88	0.929537
9404	dm3.chr3R	6,439,429 – 6,439,519	- - - - - - - -	12893	6,439,429 – 6,439,519	-	7	95	87.22	-1.13	0.97	0.877546
9405	dm3.chr3R	6,443,812 – 6,443,964	- - - intron="intron;ID=intron_FBgn0001235:21_FBgn0001235:19;Name=hth-in;Parent=FBtr0100454;parent_type=mRNA" - - - -	12894	6,443,812 – 6,443,924	-	7	118	83.08	-2.53	0.59	0.921539
9405	dm3.chr3R	6,443,812 – 6,443,964		12895	6,443,851 – 6,443,964	-	8	119	76.51	-1.99	0.56	0.943940
9406	dm3.chr3R	6,475,102 – 6,475,206	- - - - - - - -	12896	6,475,102 – 6,475,206	-	3	104	93.53	-1.84	0.91	0.866462
9407	dm3.chr3R	6,482,759 – 6,482,854	- - - intron="intron;ID=intron_FBgn0085333:1_FBgn0085333:2;Name=CG34304-in;Parent=FBtr0112500;parent_type=mRNA" - - - -	12897	6,482,759 – 6,482,854	+	12	120	82.21	-0.75	0.93	0.682467
9408	dm3.chr3R	6,489,657 – 6,489,854	- - - - - - - -	12898	6,489,657 – 6,489,753	+	4	117	72.40	-1.58	0.65	0.858551
9408	dm3.chr3R	6,489,657 – 6,489,854	- - - - - - - -	12899	6,489,746 – 6,489,854	+	5	114	71.80	-1.86	0.66	0.987629
9409	dm3.chr3R	6,507,689 – 6,507,785	- - - - - - - -	12900	6,507,689 – 6,507,785	+	5	98	85.20	-1.61	0.74	0.606135
9410	dm3.chr3R	6,511,336 – 6,511,475	- - - - - - - -	12901	6,511,336 – 6,511,437	-	6	115	68.84	-1.00	0.50	0.549501
				12902	6,511,373 – 6,511,475	+	5	116	82.10	-2.07	0.61	0.681420
				12903	6,511,373 – 6,511,475	-	5	116	82.10	-2.69	0.78	0.990861
9411	dm3.chr3R	6,518,553 – 6,518,616	- - CDS="CDS;ID=CDS_FBgn0262717:6_258;Name=Skeletor-cds;Parent=FBtr0305664;parent_type=mRNA" - - - - -	12904	6,518,553 – 6,518,616	+	10	66	71.68	-1.10	0.50	0.690124
9411	dm3.chr3R	6,518,553 – 6,518,616		12905	6,518,553 – 6,518,616	-	10	66	71.68	-1.37	0.61	0.966660
9412	dm3.chr3R	6,522,381 – 6,522,434	- - - - - - - -	12906	6,522,381 – 6,522,434	+	6	56	78.15	-0.93	0.75	0.608573
9413	dm3.chr3R	6,541,701 – 6,541,807	- - - - - - - -	12907	6,541,701 – 6,541,807	-	6	108	71.88	-1.80	0.49	0.942221
9414	dm3.chr3R	6,543,550 – 6,543,606	- - - - - - - -	12908	6,543,550 – 6,543,606	+	6	56	68.59	-2.36	0.57	0.998560
9415	dm3.chr3R	6,545,581 – 6,545,699	- - - - - - - -	12909	6,545,581 – 6,545,699	-	3	118	93.50	-1.34	0.94	0.717809
9416	dm3.chr3R	6,550,871 – 6,551,062	- - - - - - - -	12910	6,550,871 – 6,550,962	+	7	116	63.67	-0.79	0.48	0.546226
				12911	6,550,896 – 6,550,999	+	8	110	67.68	-2.17	0.33	0.939541
				12912	6,550,960 – 6,551,062	-	8	103	83.70	-1.86	0.62	0.641603
9417	dm3.chr3R	6,556,770 – 6,556,866	- - - - - - - -	12913	6,556,770 – 6,556,866	-	8	122	60.34	-2.11	0.27	0.861373
9418	dm3.chr3R	6,557,233 – 6,557,328	- - - - - - - -	12914	6,557,233 – 6,557,328	-	7	102	61.28	-1.32	0.29	0.511695
9419	dm3.chr3R	6,560,882 – 6,561,006	- - - - - - - -	12915	6,560,882 – 6,561,006	-	6	132	79.26	-1.85	0.66	0.910917
9420	dm3.chr3R	6,561,827 – 6,561,908	- - - - - - - -	12916	6,561,827 – 6,561,908	+	4	89	77.67	-2.36	0.59	0.952933
9420	dm3.chr3R	6,561,827 – 6,561,908	- - - - - - - -	12917	6,561,827 – 6,561,908	-	4	89	77.67	-1.67	0.58	0.582799
9421	dm3.chr3R	6,562,749 – 6,562,912	- - - - - - - -	12918	6,562,749 – 6,562,843	+	5	110	65.75	-1.03	0.47	0.500000
9421	dm3.chr3R	6,562,749 – 6,562,912	- - - - - - - -	12919	6,562,814 – 6,562,912	+	5	102	90.76	-1.73	0.82	0.647873
9422	dm3.chr3R	6,563,099 – 6,563,218	- - - - - - - -	12920	6,563,099 – 6,563,218	+	5	138	74.45	-2.37	0.42	0.782185
9423	dm3.chr3R	6,566,484 – 6,566,594	- - - intron="intron;ID=intron_FBgn0004841:6_FBgn0004841:5;Name=Takr86C-in;Parent=FBtr0082315,FBtr0112789;parent_type=mRNA" - - - -	12921	6,566,484 – 6,566,594	+	7	112	73.16	-1.14	0.52	0.671802
9423	dm3.chr3R	6,566,484 – 6,566,594		12922	6,566,484 – 6,566,594	-	7	112	73.16	-1.57	0.50	0.887478
9424	dm3.chr3R	6,571,051 – 6,571,141	- - - intron="intron;ID=intron_FBgn0004841:9_FBgn0004841:8;Name=Takr86C-in;Parent=FBtr0082315;parent_type=mRNA" - - - -	12923	6,571,051 – 6,571,141	+	8	105	57.67	-1.21	0.32	0.610748
9425	dm3.chr3R	6,571,529 – 6,571,636	- - - intron="intron;ID=intron_FBgn0004841:9_FBgn0004841:8;Name=Takr86C-in;Parent=FBtr0082315;parent_type=mRNA" - - - -	12924	6,571,529 – 6,571,636	+	7	109	67.86	-1.47	0.53	0.982862
9426	dm3.chr3R	6,576,234 – 6,576,336	- - - - - - - -	12925	6,576,234 – 6,576,336	+	7	113	62.90	-1.50	0.31	0.631259
9427	dm3.chr3R	6,583,002 – 6,583,145	- - - intron="intron;ID=intron_FBgn0051272:5_FBgn0051272:4;Name=CG31272-in;Parent=FBtr0082312;parent_type=mRNA" - - - -	12926	6,583,002 – 6,583,111	+	3	109	84.66	-2.08	0.75	0.788163
				12927	6,583,002 – 6,583,111	-	3	109	84.66	-2.68	0.82	0.983047
				12928	6,583,025 – 6,583,145	+	4	120	66.52	-2.31	0.29	0.519833
				12929	6,583,025 – 6,583,145	-	4	120	66.52	-1.43	0.46	0.551831
9428	dm3.chr3R	6,643,382 – 6,643,508	- - - - - - - -	12930	6,643,382 – 6,643,486	+	5	104	89.53	-2.01	0.83	0.878458
9428	dm3.chr3R	6,643,382 – 6,643,508	- - - - - - - -	12931	6,643,406 – 6,643,508	+	4	102	89.93	-1.83	0.85	0.817820
9429	dm3.chr3R	6,647,185 – 6,647,279	- - - - - - - -	12932	6,647,185 – 6,647,279	-	13	111	73.49	-0.69	0.59	0.541086
9430	dm3.chr3R	6,649,934 – 6,650,024	- - - - - - - -	12933	6,649,934 – 6,650,024	-	6	102	75.86	-2.45	0.40	0.822208
9431	dm3.chr3R	6,650,234 – 6,650,340	- - - - - - - -	12934	6,650,234 – 6,650,340	+	6	120	80.00	-1.47	0.65	0.572772
9432	dm3.chr3R	6,651,886 – 6,652,002	- - - - - - - -	12935	6,651,886 – 6,652,002	-	3	116	92.11	-2.43	0.80	0.880595
9433	dm3.chr3R	6,657,365 – 6,657,509	- - - intron="intron;ID=intron_FBgn0261053:2_FBgn0261053:3;Name=Cad86C-in;Parent=FBtr0301933,FBtr0304666;parent_type=mRNA" - - - -	12936	6,657,365 – 6,657,474	-	5	111	71.79	-2.43	0.63	0.996925
9433	dm3.chr3R	6,657,365 – 6,657,509		12937	6,657,398 – 6,657,509	-	5	116	73.31	-1.39	0.58	0.743008
9434	dm3.chr3R	6,666,829 – 6,666,941	- - - intron="intron;ID=intron_FBgn0261053:7_FBgn0261053:8;Name=Cad86C-in;Parent=FBtr0301933,FBtr0304663,FBtr0304664,FBtr0304665,FBtr0304666;parent_type=mRNA" - - - -	12938	6,666,829 – 6,666,941	+	6	112	74.90	-1.43	0.64	0.911620
9435	dm3.chr3R	6,667,095 – 6,667,202	- - - intron="intron;ID=intron_FBgn0261053:7_FBgn0261053:8;Name=Cad86C-in;Parent=FBtr0301933,FBtr0304663,FBtr0304664,FBtr0304665,FBtr0304666;parent_type=mRNA" - - - -	12939	6,667,095 – 6,667,202	-	6	119	76.02	-1.41	0.59	0.717580
9436	dm3.chr3R	6,676,595 – 6,676,661	- - - intron="intron;ID=intron_FBgn0259740:3_FBgn0259740:5;Name=CG42394-in;Parent=FBtr0300045;parent_type=mRNA" - - - -	12940	6,676,595 – 6,676,661	+	9	72	61.56	-0.74	0.40	0.582095
9436	dm3.chr3R	6,676,595 – 6,676,661		12941	6,676,595 – 6,676,661	-	9	72	61.56	-0.96	0.41	0.810645
9437	dm3.chr3R	6,678,100 – 6,678,205	- - - - - - - -	12942	6,678,100 – 6,678,205	+	7	118	68.68	-2.00	0.55	0.994385
9437	dm3.chr3R	6,678,100 – 6,678,205	- - - - - - - -	12943	6,678,100 – 6,678,205	-	7	118	68.68	-2.04	0.53	0.993677
9438	dm3.chr3R	6,717,137 – 6,717,251	- - - intron="intron;ID=intron_FBgn0037855:4_FBgn0037855:3;Name=CG6621-in;Parent=FBtr0082329,FBtr0302935;parent_type=mRNA" - - - -	12944	6,717,137 – 6,717,251	-	3	116	88.34	-1.91	0.81	0.743671
9439	dm3.chr3R	6,724,707 – 6,724,779	- - - - - - - -	12945	6,724,707 – 6,724,779	-	4	73	81.01	-1.94	0.58	0.508843
9440	dm3.chr3R	6,728,374 – 6,728,477	- - - - - - - -	12946	6,728,374 – 6,728,477	+	6	103	80.98	-1.66	0.63	0.550013
9440	dm3.chr3R	6,728,374 – 6,728,477	- - - - - - - -	12947	6,728,374 – 6,728,477	-	6	103	80.98	-2.46	0.57	0.915292
9441	dm3.chr3R	6,731,777 – 6,731,879	- - - - - - - -	12948	6,731,777 – 6,731,879	-	8	114	60.93	-1.77	0.25	0.655244
9442	dm3.chr3R	6,740,186 – 6,740,271	- - - - - - - -	12949	6,740,186 – 6,740,271	-	12	89	84.15	-1.58	0.71	0.774572
9443	dm3.chr3R	6,745,413 – 6,745,470	- - - - - - - -	12950	6,745,413 – 6,745,470	+	6	63	69.97	-1.03	0.62	0.862229
9444	dm3.chr3R	6,746,313 – 6,746,374	- - - - - - - -	12951	6,746,313 – 6,746,374	+	3	61	72.68	-1.50	0.78	0.909456
9445	dm3.chr3R	6,746,716 – 6,746,809	- - - - - - - -	12952	6,746,716 – 6,746,809	+	9	108	89.10	-1.90	0.85	0.905081
9446	dm3.chr3R	6,749,199 – 6,749,324	- - - - - - - -	12953	6,749,199 – 6,749,301	+	3	108	75.08	-1.66	0.75	0.888981
9446	dm3.chr3R	6,749,199 – 6,749,324	- - - - - - - -	12954	6,749,223 – 6,749,324	-	7	102	89.15	-2.34	0.63	0.691059
9447	dm3.chr3R	6,749,546 – 6,749,640	- - - - - - - -	12955	6,749,546 – 6,749,640	-	6	103	85.28	-2.18	0.59	0.600230
9448	dm3.chr3R	6,754,104 – 6,754,204	- - - - - - - -	12956	6,754,104 – 6,754,204	+	3	111	85.09	-1.26	0.91	0.737454
9448	dm3.chr3R	6,754,104 – 6,754,204	- - - - - - - -	12957	6,754,104 – 6,754,204	-	3	111	85.09	-1.40	0.88	0.727948
9449	dm3.chr3R	6,754,269 – 6,754,363	- - - - - - - -	12958	6,754,269 – 6,754,363	+	7	107	72.61	-1.09	0.57	0.544133
9450	dm3.chr3R	6,762,542 – 6,762,621	- - - - - - - -	12959	6,762,542 – 6,762,621	+	4	80	74.63	-1.73	0.50	0.537153
9450	dm3.chr3R	6,762,542 – 6,762,621	- - - - - - - -	12960	6,762,542 – 6,762,621	-	4	80	74.63	-2.21	0.63	0.976076
9451	dm3.chr3R	6,769,456 – 6,769,550	- - - - - - - -	12961	6,769,456 – 6,769,550	+	7	113	67.90	-0.97	0.45	0.559526
9452	dm3.chr3R	6,779,547 – 6,779,640	- - - - - - - -	12962	6,779,547 – 6,779,640	+	5	99	94.97	-1.81	0.92	0.877231
9452	dm3.chr3R	6,779,547 – 6,779,640	- - - - - - - -	12963	6,779,547 – 6,779,640	-	5	99	94.97	-1.78	0.90	0.814277
9453	dm3.chr3R	6,784,068 – 6,784,142	- - - - - - - -	12964	6,784,068 – 6,784,142	+	5	77	61.80	-1.02	0.52	0.915893
9454	dm3.chr3R	6,789,788 – 6,789,890	- - - - - - - -	12965	6,789,788 – 6,789,890	+	5	104	88.32	-1.69	0.84	0.800891
9455	dm3.chr3R	6,796,928 – 6,797,045	- - - - - - - -	12966	6,796,928 – 6,797,045	-	7	117	71.58	-2.94	0.53	0.999032
9456	dm3.chr3R	6,806,371 – 6,806,494	- - - - - - - -	12967	6,806,371 – 6,806,467	-	12	116	61.09	-0.73	0.47	0.862699
9456	dm3.chr3R	6,806,371 – 6,806,494	- - - - - - - -	12968	6,806,393 – 6,806,494	-	12	116	67.34	-1.84	0.43	0.980440
9457	dm3.chr3R	6,807,635 – 6,807,739	- - - - - - - -	12969	6,807,635 – 6,807,739	-	8	107	69.84	-0.89	0.59	0.868258
9458	dm3.chr3R	6,811,576 – 6,811,653	- - - - - - - -	12970	6,811,576 – 6,811,653	-	12	90	76.80	-1.29	0.72	0.871879
9459	dm3.chr3R	6,813,342 – 6,813,437	- - - - - - - -	12971	6,813,342 – 6,813,437	+	5	100	63.00	-0.21	0.64	0.581929
9460	dm3.chr3R	6,835,329 – 6,835,438	- - - intron="intron;ID=intron_FBgn0083950:1_FBgn0083950:2;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12972	6,835,329 – 6,835,438	-	5	109	77.92	-1.76	0.64	0.892507
9461	dm3.chr3R	6,835,962 – 6,836,123	- - - intron="intron;ID=intron_FBgn0083950:1_FBgn0083950:2;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12973	6,835,962 – 6,836,065	-	8	113	79.42	-1.24	0.66	0.561083
				12974	6,835,987 – 6,836,102	-	11	121	88.63	-1.63	0.90	0.908236
				12975	6,836,025 – 6,836,123	-	12	117	82.47	-1.55	0.94	0.965333
9462	dm3.chr3R	6,838,092 – 6,838,148	- - - intron="intron;ID=intron_FBgn0083950:3_FBgn0083950:4;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12976	6,838,092 – 6,838,148	+	3	56	97.60	-0.86	1.00	0.585642
9462	dm3.chr3R	6,838,092 – 6,838,148		12977	6,838,092 – 6,838,148	-	3	56	97.60	-1.98	1.00	0.972235
9463	dm3.chr3R	6,842,228 – 6,842,367	- - - intron="intron;ID=intron_FBgn0083950:5_FBgn0083950:6;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12978	6,842,228 – 6,842,367	+	6	149	84.02	-3.29	0.66	0.995689
9463	dm3.chr3R	6,842,228 – 6,842,367		12979	6,842,228 – 6,842,367	-	6	149	84.02	-2.01	0.61	0.669925
9464	dm3.chr3R	6,842,997 – 6,843,066	- - - intron="intron;ID=intron_FBgn0083950:5_FBgn0083950:6;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12980	6,842,997 – 6,843,066	-	11	82	86.91	-2.43	0.67	0.892616
9465	dm3.chr3R	6,844,860 – 6,844,932	- - - intron="intron;ID=intron_FBgn0083950:5_FBgn0083950:6;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12981	6,844,860 – 6,844,932	+	5	72	88.69	-2.75	0.82	0.983795
9466	dm3.chr3R	6,846,160 – 6,846,334	- - - intron="intron;ID=intron_FBgn0083950:6_FBgn0083950:7;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12982	6,846,160 – 6,846,255	+	5	95	92.60	-1.69	0.97	0.944196
9466	dm3.chr3R	6,846,160 – 6,846,334		12983	6,846,255 – 6,846,334	-	5	80	81.27	-2.16	0.56	0.703751
9467	dm3.chr3R	6,853,256 – 6,853,347	- - - intron="intron;ID=intron_FBgn0083950:9_FBgn0083950:10;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12984	6,853,256 – 6,853,347	-	5	117	59.23	-1.01	0.45	0.820093
9468	dm3.chr3R	6,866,818 – 6,866,926	- - - intron="intron;ID=intron_FBgn0083950:12_FBgn0083950:13;Name=CG34114-in;Parent=FBtr0110808,FBtr0301070;parent_type=mRNA" - - - -	12985	6,866,818 – 6,866,926	-	7	109	82.66	-1.74	0.68	0.775897
9469	dm3.chr3R	6,871,219 – 6,871,310	- - - - - - - -	12986	6,871,219 – 6,871,310	+	12	96	68.48	-0.46	0.51	0.567145
9470	dm3.chr3R	6,872,058 – 6,872,165	- - - - - - - -	12987	6,872,058 – 6,872,165	-	4	110	82.32	-1.91	0.78	0.885214
9471	dm3.chr3R	6,878,101 – 6,878,200	- - - - - - - -	12988	6,878,101 – 6,878,200	-	11	109	86.46	-1.54	0.70	0.500000
9472	dm3.chr3R	6,880,596 – 6,880,714	- - - - - - - -	12989	6,880,596 – 6,880,714	-	4	118	75.28	-1.81	0.49	0.525348
9473	dm3.chr3R	6,882,314 – 6,882,424	- - - - - - - -	12990	6,882,314 – 6,882,424	-	9	111	73.01	-0.81	0.53	0.563593
9474	dm3.chr3R	6,883,865 – 6,883,963	- - - - - - - -	12991	6,883,865 – 6,883,963	+	10	101	95.04	-1.46	0.93	0.775377
9475	dm3.chr3R	6,888,014 – 6,888,104	- - - - - - - -	12992	6,888,014 – 6,888,104	+	8	99	80.05	-1.95	0.72	0.956908
9476	dm3.chr3R	6,890,280 – 6,890,375	- - - - - - - -	12993	6,890,280 – 6,890,375	+	7	111	77.15	-1.88	0.58	0.874046
9477	dm3.chr3R	6,900,351 – 6,900,496	- - - - - - - -	12994	6,900,351 – 6,900,454	+	11	115	76.63	-1.89	0.67	0.983907
				12995	6,900,351 – 6,900,454	-	11	115	76.63	-1.11	0.61	0.664473
				12996	6,900,381 – 6,900,480	+	12	114	80.87	-1.76	0.73	0.929656
				12997	6,900,381 – 6,900,480	-	12	114	80.87	-1.66	0.61	0.683539
				12998	6,900,398 – 6,900,496	+	12	113	80.15	-1.48	0.82	0.935489
				12999	6,900,398 – 6,900,496	-	12	113	80.15	-1.16	0.75	0.712928
9478	dm3.chr3R	6,905,671 – 6,905,769	- - - - - - - -	13000	6,905,671 – 6,905,769	-	8	114	65.80	-1.79	0.42	0.944317
9479	dm3.chr3R	6,906,537 – 6,906,670	- - - - - - - -	13001	6,906,537 – 6,906,630	-	11	104	67.82	-1.59	0.37	0.766228
9479	dm3.chr3R	6,906,537 – 6,906,670	- - - - - - - -	13002	6,906,562 – 6,906,670	-	12	121	82.51	-2.20	0.59	0.889995
9480	dm3.chr3R	6,915,033 – 6,915,149	- - - - - - - -	13003	6,915,033 – 6,915,149	+	5	120	74.47	-3.14	0.65	0.998999
9480	dm3.chr3R	6,915,033 – 6,915,149	- - - - - - - -	13004	6,915,033 – 6,915,149	-	5	120	74.47	-3.13	0.54	0.997679
9481	dm3.chr3R	6,918,536 – 6,918,676	- - - - - - - -	13005	6,918,536 – 6,918,638	-	6	110	79.95	-1.72	0.58	0.590826
9481	dm3.chr3R	6,918,536 – 6,918,676	- - - - - - - -	13006	6,918,570 – 6,918,676	+	9	111	75.57	-1.62	0.43	0.620610
9482	dm3.chr3R	6,923,959 – 6,924,060	- - - - - - - -	13007	6,923,959 – 6,924,060	-	7	114	67.90	-1.32	0.40	0.591295
9483	dm3.chr3R	6,946,778 – 6,946,872	- - - - - - - -	13008	6,946,778 – 6,946,872	+	12	117	79.97	-1.71	0.61	0.762617
9484	dm3.chr3R	6,949,683 – 6,949,773	- - - - - - - -	13009	6,949,683 – 6,949,773	-	8	91	74.95	-1.41	0.57	0.834928
9485	dm3.chr3R	6,957,931 – 6,958,026	- - - - - - - -	13010	6,957,931 – 6,958,026	+	7	102	73.47	-1.97	0.48	0.948873
9486	dm3.chr3R	6,969,369 – 6,969,482	- - - - - - - -	13011	6,969,369 – 6,969,482	+	9	119	72.62	-1.31	0.52	0.849729
9487	dm3.chr3R	7,011,553 – 7,011,655	- - - - - - - -	13012	7,011,553 – 7,011,655	+	11	114	85.96	-1.86	0.67	0.712635
9488	dm3.chr3R	7,018,096 – 7,018,196	- - - - - - - -	13013	7,018,096 – 7,018,196	+	10	117	74.71	-2.16	0.36	0.640390
9489	dm3.chr3R	7,020,588 – 7,020,702	- - - - - - - -	13014	7,020,588 – 7,020,702	+	4	120	79.55	-2.62	0.58	0.958620
9490	dm3.chr3R	7,025,029 – 7,025,129	- - - - - - - -	13015	7,025,029 – 7,025,129	-	7	110	59.66	-1.13	0.35	0.609806
9491	dm3.chr3R	7,029,954 – 7,030,046	- - - intron="intron;ID=intron_FBgn0037872:2_FBgn0037872:5;Name=cu-in;Parent=FBtr0113219;parent_type=mRNA" - - - -	13016	7,029,954 – 7,030,046	+	6	99	67.45	-1.30	0.39	0.500000
9492	dm3.chr3R	7,030,972 – 7,031,062	- - - intron="intron;ID=intron_FBgn0037872:3_FBgn0037872:5;Name=cu-in;Parent=FBtr0113220;parent_type=mRNA" - - - -	13017	7,030,972 – 7,031,062	+	5	90	94.40	-1.36	0.92	0.641113
9493	dm3.chr3R	7,031,333 – 7,031,442	- - CDS="CDS;ID=CDS_FBgn0037872:4_70;Name=cu-cds;Parent=FBtr0113218;parent_type=mRNA" intron="intron;ID=intron_FBgn0037872:3_FBgn0037872:5;Name=cu-in;Parent=FBtr0113220;parent_type=mRNA" - - - -	13018	7,031,333 – 7,031,442	-	9	116	70.80	-0.81	0.52	0.507546
9494	dm3.chr3R	7,041,598 – 7,041,730	- - CDS="CDS;ID=CDS_FBgn0086472:4_263;Name=RpS25-cds;Parent=FBtr0082369,FBtr0082370;parent_type=mRNA" - - - - -	13019	7,041,598 – 7,041,730	+	14	136	75.49	-0.74	0.59	0.695707
9495	dm3.chr3R	7,042,289 – 7,042,398	- - - - - - - -	13020	7,042,289 – 7,042,398	+	12	114	63.23	-1.44	0.38	0.969981
9495	dm3.chr3R	7,042,289 – 7,042,398	- - - - - - - -	13021	7,042,289 – 7,042,398	-	12	114	63.23	-1.24	0.34	0.854461
9496	dm3.chr3R	7,047,890 – 7,047,989	- - CDS="CDS;ID=CDS_FBgn0020910:2_198;Name=RpL3-cds;Parent=FBtr0082347,FBtr0082346,FBtr0302586;parent_type=mRNA" - - - - -	13022	7,047,890 – 7,047,989	+	15	119	78.49	-1.50	0.56	0.759385
9497	dm3.chr3R	7,048,752 – 7,048,856	- - CDS="CDS;ID=CDS_FBgn0020910:5_198;Name=RpL3-cds;Parent=FBtr0302586;parent_type=mRNA" - - - - -	13023	7,048,752 – 7,048,856	+	13	114	64.89	-1.14	0.67	0.996392
9498	dm3.chr3R	7,054,525 – 7,054,634	- - CDS="CDS;ID=CDS_FBgn0037881:2_171;Name=CG10703-cds;Parent=FBtr0082366;parent_type=mRNA" - - - - -	13024	7,054,525 – 7,054,634	+	12	115	79.51	-2.18	0.54	0.936674
9499	dm3.chr3R	7,059,347 – 7,059,446	- - - intron="intron;ID=intron_FBgn0037884:4_FBgn0037884:3;Name=CG17184-in;Parent=FBtr0082363,FBtr0082364;parent_type=mRNA" - - - -	13025	7,059,347 – 7,059,446	+	3	103	86.58	-1.97	0.80	0.796912
9500	dm3.chr3R	7,066,570 – 7,066,693	- - CDS="CDS;ID=CDS_FBgn0037888:2_243;Name=scpr-B-cds;Parent=FBtr0082362;parent_type=mRNA" - - - - -	13026	7,066,570 – 7,066,663	+	12	113	69.24	-0.38	0.60	0.601834
9500	dm3.chr3R	7,066,570 – 7,066,693		13027	7,066,598 – 7,066,693	+	12	107	66.83	-0.94	0.51	0.935660
9501	dm3.chr3R	7,073,834 – 7,073,930	- - - - - - - -	13028	7,073,834 – 7,073,930	+	10	106	84.03	-4.15	0.58	0.998953
9501	dm3.chr3R	7,073,834 – 7,073,930	- - - - - - - -	13029	7,073,834 – 7,073,930	-	10	106	84.03	-5.09	0.63	0.999732
9502	dm3.chr3R	7,074,181 – 7,074,404	- - - - - - - -	13030	7,074,181 – 7,074,283	-	12	117	67.43	-1.08	0.55	0.965215
				13031	7,074,188 – 7,074,290	-	12	117	69.75	-1.18	0.52	0.936181
				13032	7,074,290 – 7,074,404	-	4	114	89.68	-2.18	0.72	0.668478
9503	dm3.chr3R	7,079,442 – 7,079,551	- - - - - - - -	13033	7,079,442 – 7,079,551	-	7	112	68.46	-2.23	0.24	0.645782
9504	dm3.chr3R	7,082,664 – 7,082,757	- - - - - - - -	13034	7,082,664 – 7,082,757	+	6	100	77.64	-1.00	0.90	0.878458
9504	dm3.chr3R	7,082,664 – 7,082,757	- - - - - - - -	13035	7,082,664 – 7,082,757	-	6	100	77.64	-0.92	0.77	0.626050
9505	dm3.chr3R	7,094,983 – 7,095,046	- - - - - - - -	13036	7,094,983 – 7,095,046	+	6	76	70.20	-2.59	0.72	0.998875
9505	dm3.chr3R	7,094,983 – 7,095,046	- - - - - - - -	13037	7,094,983 – 7,095,046	-	6	76	70.20	-1.34	0.51	0.699092
9506	dm3.chr3R	7,098,240 – 7,098,349	- - - intron="intron;ID=intron_CG31386:4_CG31386:5;Name=CG31386-in;Parent=FBtr0082359;parent_type=mRNA" - - - -	13038	7,098,240 – 7,098,343	+	5	118	69.38	-1.31	0.63	0.939628
9506	dm3.chr3R	7,098,240 – 7,098,349		13039	7,098,251 – 7,098,349	+	5	113	67.95	-1.18	0.50	0.696043
9507	dm3.chr3R	7,105,900 – 7,105,990	- - - intron="intron;ID=intron_CG31386:3_CG31386:4;Name=CG31386-in;Parent=FBtr0082359;parent_type=mRNA" - - - -	13040	7,105,900 – 7,105,990	+	12	105	78.40	-1.08	0.79	0.828268
9508	dm3.chr3R	7,108,054 – 7,108,160	- - - intron="intron;ID=intron_CG31386:3_CG31386:4;Name=CG31386-in;Parent=FBtr0082359;parent_type=mRNA" - - - -	13041	7,108,054 – 7,108,160	-	4	106	86.10	-2.86	0.76	0.985645
9509	dm3.chr3R	7,113,329 – 7,113,432	- - - intron="intron;ID=intron_CG31386:2_CG31386:3;Name=CG31386-in;Parent=FBtr0082359;parent_type=mRNA" - - - -	13042	7,113,329 – 7,113,432	+	10	124	64.21	-1.58	0.35	0.800320
9510	dm3.chr3R	7,127,022 – 7,127,146	- - - intron="intron;ID=intron_CG31386:1_CG31386:2;Name=CG31386-in;Parent=FBtr0082359;parent_type=mRNA" - - - -	13043	7,127,022 – 7,127,124	-	7	118	72.93	-2.84	0.50	0.992809
				13044	7,127,056 – 7,127,146	+	5	90	73.79	-1.56	0.60	0.826114
				13045	7,127,056 – 7,127,146	-	5	90	73.79	-1.97	0.69	0.980887
9511	dm3.chr3R	7,128,290 – 7,128,452	- - - intron="intron;ID=intron_CG31386:1_CG31386:2;Name=CG31386-in;Parent=FBtr0082359;parent_type=mRNA" - - - -	13046	7,128,290 – 7,128,386	-	7	104	62.05	-1.55	0.34	0.878302
				13047	7,128,322 – 7,128,419	+	6	104	72.15	-1.05	0.60	0.735503
				13048	7,128,322 – 7,128,419	-	6	104	72.15	-1.71	0.51	0.900954
				13049	7,128,353 – 7,128,452	-	6	104	70.35	-1.29	0.46	0.578293
9512	dm3.chr3R	7,134,118 – 7,134,221	- - - - - - - -	13050	7,134,118 – 7,134,221	+	12	119	74.51	-1.50	0.54	0.721943
9513	dm3.chr3R	7,135,331 – 7,135,429	- - - - - - - -	13051	7,135,331 – 7,135,429	+	12	113	89.19	-1.50	0.82	0.677467
9514	dm3.chr3R	7,140,669 – 7,140,764	- - - - - - - -	13052	7,140,669 – 7,140,764	+	9	115	74.17	-2.60	0.48	0.989782
9515	dm3.chr3R	7,140,958 – 7,141,063	- - - - - - - -	13053	7,140,958 – 7,141,063	-	4	105	83.73	-1.22	0.90	0.811386
9516	dm3.chr3R	7,145,073 – 7,145,175	- - - - - - - -	13054	7,145,073 – 7,145,175	+	6	109	74.88	-1.17	0.61	0.635660
9517	dm3.chr3R	7,147,472 – 7,147,548	- - - - - - - -	13055	7,147,472 – 7,147,548	+	5	76	87.73	-1.84	0.78	0.760441
9518	dm3.chr3R	7,149,005 – 7,149,076	- - - - - - - -	13056	7,149,005 – 7,149,076	-	5	71	91.03	-1.09	0.96	0.739497
9519	dm3.chr3R	7,154,205 – 7,154,310	- - - - - - - -	13057	7,154,205 – 7,154,310	-	6	109	90.28	-1.32	0.87	0.594279
9520	dm3.chr3R	7,159,050 – 7,159,164	- - - intron="intron;ID=intron_FBgn0004595:1_FBgn0004595:3;Name=pros-in;Parent=FBtr0304604;parent_type=mRNA" - - - -	13058	7,159,050 – 7,159,164	+	8	120	72.01	-1.28	0.45	0.654484
9521	dm3.chr3R	7,174,067 – 7,174,158	- - - intron="intron;ID=intron_FBgn0004595:3_FBgn0004595:4;Name=pros-in;Parent=FBtr0304603,FBtr0304604,FBtr0304608;parent_type=mRNA" - - - -	13059	7,174,067 – 7,174,158	-	5	97	88.25	-2.62	0.82	0.981687
9522	dm3.chr3R	7,183,224 – 7,183,279	- - - - - - - -	13060	7,183,224 – 7,183,279	+	6	57	95.93	-3.37	1.02	0.998534
9523	dm3.chr3R	7,187,388 – 7,187,478	- - - - - - - -	13061	7,187,388 – 7,187,478	-	11	119	83.35	-0.94	0.87	0.657029
9524	dm3.chr3R	7,190,001 – 7,190,108	- - - - - - - -	13062	7,190,001 – 7,190,108	+	5	113	92.88	-1.89	0.80	0.589212
9525	dm3.chr3R	7,192,603 – 7,192,711	- - - - - - - -	13063	7,192,603 – 7,192,711	+	11	113	73.93	-1.40	0.53	0.841907
9525	dm3.chr3R	7,192,603 – 7,192,711	- - - - - - - -	13064	7,192,603 – 7,192,711	-	11	113	73.93	-0.97	0.56	0.613503
9526	dm3.chr3R	7,193,113 – 7,193,264	- - - - - - - -	13065	7,193,113 – 7,193,229	-	6	117	88.70	-3.01	0.80	0.992486
9526	dm3.chr3R	7,193,113 – 7,193,264	- - - - - - - -	13066	7,193,152 – 7,193,264	-	6	118	80.28	-1.91	0.63	0.867721
9527	dm3.chr3R	7,193,669 – 7,193,762	- - - - - - - -	13067	7,193,669 – 7,193,762	+	8	111	75.11	-2.52	0.46	0.971209
9528	dm3.chr3R	7,214,664 – 7,214,756	- - - intron="intron;ID=intron_FBgn0004595:12_FBgn0004595:13;Name=pros-in;Parent=FBtr0304603,FBtr0304604,FBtr0304606,FBtr0304607;parent_type=mRNA" - - - -	13068	7,214,664 – 7,214,756	+	3	93	97.12	-1.28	0.98	0.774094
9529	dm3.chr3R	7,219,453 – 7,219,585	- - - - - - - -	13069	7,219,453 – 7,219,555	+	10	107	73.80	-1.22	0.55	0.734477
9529	dm3.chr3R	7,219,453 – 7,219,585	- - - - - - - -	13070	7,219,481 – 7,219,585	+	9	120	66.18	-3.70	0.52	0.999925
9530	dm3.chr3R	7,221,025 – 7,221,116	- - - - - - - -	13071	7,221,025 – 7,221,116	+	6	98	88.07	-2.90	0.83	0.992385
9531	dm3.chr3R	7,222,701 – 7,222,792	- - - - - - - -	13072	7,222,701 – 7,222,792	+	11	112	73.96	-0.81	0.78	0.801612
9532	dm3.chr3R	7,224,778 – 7,224,917	- - - - - - - -	13073	7,224,778 – 7,224,884	+	12	116	75.23	-2.25	0.49	0.981512
				13074	7,224,778 – 7,224,884	-	12	116	75.23	-1.26	0.52	0.688817
				13075	7,224,813 – 7,224,917	+	12	114	79.24	-2.14	0.63	0.975727
9533	dm3.chr3R	7,236,541 – 7,236,689	- - - intron="intron;ID=intron_FBgn0011774:1_FBgn0011774:2;Name=Irbp-in;Parent=FBtr0082385;parent_type=mRNA" - - - -	13076	7,236,541 – 7,236,650	+	10	113	61.52	-3.22	0.62	0.999975
				13077	7,236,541 – 7,236,650	-	10	113	61.52	-2.90	0.52	0.999944
				13078	7,236,574 – 7,236,689	+	12	120	74.49	-2.42	0.57	0.997479
				13079	7,236,574 – 7,236,689	-	12	120	74.49	-2.84	0.40	0.992595
9534	dm3.chr3R	7,241,143 – 7,241,235	- - CDS="CDS;ID=CDS_FBgn0037894:5_43;Name=Ranbp9-cds;Parent=FBtr0082386;parent_type=mRNA" - - - - -	13080	7,241,143 – 7,241,235	+	10	106	67.80	-0.96	0.42	0.639921
9535	dm3.chr3R	7,266,558 – 7,266,608	- - - intron="intron;ID=intron_FBgn0051374:6_FBgn0051374:5;Name=sals-in;Parent=FBtr0082400,FBtr0082401,FBtr0082399,FBtr0300812,FBtr0306100,FBtr0306101;parent_type=mRNA" - - - -	13081	7,266,558 – 7,266,608	+	6	50	78.00	-2.29	0.60	0.982223
9536	dm3.chr3R	7,271,020 – 7,271,116	- - - intron="intron;ID=intron_FBgn0051374:8_FBgn0051374:7;Name=sals-in;Parent=FBtr0082400;parent_type=mRNA" - - - -	13082	7,271,020 – 7,271,116	+	6	100	92.26	-3.32	0.86	0.995504
9536	dm3.chr3R	7,271,020 – 7,271,116		13083	7,271,020 – 7,271,116	-	6	100	92.26	-1.69	0.87	0.771842
9537	dm3.chr3R	7,272,615 – 7,272,676	- - - - - - - -	13084	7,272,615 – 7,272,676	-	4	61	94.26	-2.47	1.00	0.993507
9538	dm3.chr3R	7,275,343 – 7,275,435	- - - intron="intron;ID=intron_FBgn0051374:11_FBgn0051374:10;Name=sals-in;Parent=FBtr0300812;parent_type=mRNA" - - - -	13085	7,275,343 – 7,275,435	-	3	92	96.36	-1.22	0.95	0.599742
9539	dm3.chr3R	7,275,702 – 7,275,815	- - - intron="intron;ID=intron_FBgn0051374:11_FBgn0051374:10;Name=sals-in;Parent=FBtr0300812;parent_type=mRNA" - - - -	13086	7,275,702 – 7,275,792	+	8	93	72.80	-1.45	0.43	0.592516
				13087	7,275,718 – 7,275,815	+	10	110	62.84	-1.42	0.42	0.954009
				13088	7,275,718 – 7,275,815	-	10	110	62.84	-1.98	0.30	0.922268
9540	dm3.chr3R	7,279,705 – 7,279,795	- - - - - - - -	13089	7,279,705 – 7,279,795	+	5	106	82.88	-1.88	0.62	0.507421
9541	dm3.chr3R	7,282,724 – 7,282,818	- - - - - - - -	13090	7,282,724 – 7,282,818	+	4	94	79.04	-3.23	0.55	0.992038
9541	dm3.chr3R	7,282,724 – 7,282,818	- - - - - - - -	13091	7,282,724 – 7,282,818	-	4	94	79.04	-2.13	0.50	0.565533
9542	dm3.chr3R	7,287,045 – 7,287,110	- - - - - - - -	13092	7,287,045 – 7,287,110	-	5	67	65.27	-0.35	0.63	0.554974
9543	dm3.chr3R	7,289,274 – 7,289,368	- - - - - - - -	13093	7,289,274 – 7,289,368	+	7	114	64.69	-1.16	0.45	0.772213
9544	dm3.chr3R	7,303,051 – 7,303,184	- - - - - - - -	13094	7,303,051 – 7,303,157	-	12	120	78.53	-1.46	0.55	0.574933
				13095	7,303,090 – 7,303,184	+	7	105	65.54	-1.48	0.42	0.888470
				13096	7,303,090 – 7,303,184	-	7	105	65.54	-1.04	0.50	0.870118
9545	dm3.chr3R	7,323,771 – 7,323,869	- - - - - - - -	13097	7,323,771 – 7,323,869	+	8	106	72.15	-1.81	0.91	0.994182
9546	dm3.chr3R	7,326,326 – 7,326,435	- - - intron="intron;ID=intron_CG5308:1_CG5308:2;Name=dpr5-in;Parent=FBtr0082394;parent_type=mRNA" - - - -	13098	7,326,326 – 7,326,435	+	7	114	65.51	-0.67	0.57	0.879538
9547	dm3.chr3R	7,329,815 – 7,329,910	- - - intron="intron;ID=intron_CG5308:3_CG5308:4;Name=dpr5-in;Parent=FBtr0082394,FBtr0082395;parent_type=mRNA" - - - -	13099	7,329,815 – 7,329,910	-	6	99	86.57	-2.38	0.82	0.977872
9548	dm3.chr3R	7,332,848 – 7,332,938	- - - - - - - -	13100	7,332,848 – 7,332,938	-	9	98	69.13	-2.26	0.24	0.589539
9549	dm3.chr3R	7,333,256 – 7,333,357	- - - - - - - -	13101	7,333,256 – 7,333,357	-	5	102	81.23	-1.51	0.75	0.788412
9550	dm3.chr3R	7,333,591 – 7,333,752	- - - - - - - -	13102	7,333,591 – 7,333,693	+	6	114	65.31	-1.27	0.38	0.515314
				13103	7,333,591 – 7,333,693	-	6	114	65.31	-1.08	0.45	0.692286
				13104	7,333,693 – 7,333,752	+	5	61	87.77	-1.12	0.92	0.708906
9551	dm3.chr3R	7,334,312 – 7,334,409	- - - - - - - -	13105	7,334,312 – 7,334,409	-	11	100	67.46	-1.35	0.41	0.789064
9552	dm3.chr3R	7,337,346 – 7,337,445	- - - - - - - -	13106	7,337,346 – 7,337,445	-	6	102	79.54	-1.31	0.64	0.507723
9553	dm3.chr3R	7,339,566 – 7,339,657	- - - - - - - -	13107	7,339,566 – 7,339,657	+	5	104	71.31	-1.91	0.38	0.518243
9553	dm3.chr3R	7,339,566 – 7,339,657	- - - - - - - -	13108	7,339,566 – 7,339,657	-	5	104	71.31	-2.27	0.48	0.963849
9554	dm3.chr3R	7,340,608 – 7,340,728	- - - - - - - -	13109	7,340,608 – 7,340,728	+	5	120	90.75	-1.43	0.87	0.631637
9555	dm3.chr3R	7,342,350 – 7,342,448	- - - - - - - -	13110	7,342,350 – 7,342,448	+	4	101	57.52	-2.24	0.32	0.939483
9556	dm3.chr3R	7,345,331 – 7,345,431	- - - - - - - -	13111	7,345,331 – 7,345,431	+	7	112	72.13	-1.96	0.66	0.993682
9557	dm3.chr3R	7,347,401 – 7,347,494	- - - - - - - -	13112	7,347,401 – 7,347,494	+	8	101	66.93	-1.64	0.36	0.806972
9557	dm3.chr3R	7,347,401 – 7,347,494	- - - - - - - -	13113	7,347,401 – 7,347,494	-	8	101	66.93	-2.10	0.31	0.884062
9558	dm3.chr3R	7,349,523 – 7,349,735	- - - - - - - -	13114	7,349,523 – 7,349,625	+	8	107	75.18	-1.57	0.50	0.742365
9558	dm3.chr3R	7,349,523 – 7,349,735	- - - - - - - -	13115	7,349,625 – 7,349,735	-	11	120	86.92	-2.14	0.69	0.856503
9559	dm3.chr3R	7,358,031 – 7,358,130	- - - - - - - -	13116	7,358,031 – 7,358,130	+	6	100	82.29	-2.08	0.80	0.974074
9560	dm3.chr3R	7,365,237 – 7,365,345	- - - intron="intron;ID=intron_FBgn0053512:6_FBgn0053512:5;Name=dpr4-in;Parent=FBtr0300491;parent_type=mRNA" - - - -	13117	7,365,237 – 7,365,345	+	5	120	82.80	-2.36	0.53	0.679081
9560	dm3.chr3R	7,365,237 – 7,365,345		13118	7,365,237 – 7,365,345	-	5	120	82.80	-1.81	0.66	0.630315
9561	dm3.chr3R	7,371,535 – 7,371,646	- - - - - - - -	13119	7,371,535 – 7,371,646	-	7	113	61.83	-0.99	0.41	0.861728
9562	dm3.chr3R	7,377,019 – 7,377,113	- - - - - - - -	13120	7,377,019 – 7,377,113	+	9	103	73.60	-1.85	0.62	0.987976
9562	dm3.chr3R	7,377,019 – 7,377,113	- - - - - - - -	13121	7,377,019 – 7,377,113	-	9	103	73.60	-2.06	0.58	0.990841
9563	dm3.chr3R	7,377,588 – 7,377,715	- - - - - - - -	13122	7,377,588 – 7,377,682	+	5	95	90.71	-2.67	0.73	0.919872
				13123	7,377,605 – 7,377,715	+	6	118	76.47	-2.40	0.46	0.920856
				13124	7,377,605 – 7,377,715	-	6	118	76.47	-1.63	0.50	0.540911
9564	dm3.chr3R	7,379,161 – 7,379,259	- - - - - - - -	13125	7,379,161 – 7,379,259	+	5	107	80.21	-2.02	0.63	0.875011
9565	dm3.chr3R	7,383,457 – 7,383,545	- - - - - - - -	13126	7,383,457 – 7,383,545	+	6	91	73.34	-2.27	0.55	0.989464
9566	dm3.chr3R	7,390,944 – 7,391,061	- - - intron="intron;ID=intron_CG6783:1_CG6783:2;Name=CG6783-in;Parent=FBtr0100320;parent_type=mRNA" - - - -	13127	7,390,944 – 7,391,061	+	5	120	86.40	-1.78	0.71	0.525499
9567	dm3.chr3R	7,392,918 – 7,393,022	- - - - - - - -	13128	7,392,918 – 7,393,022	+	6	112	78.64	-1.85	0.54	0.670713
9567	dm3.chr3R	7,392,918 – 7,393,022	- - - - - - - -	13129	7,392,918 – 7,393,022	-	6	112	78.64	-1.97	0.53	0.738977
9568	dm3.chr3R	7,395,978 – 7,396,035	- - - intron="intron;ID=intron_FBgn0025701:1_FBgn0025701:2;Name=CG14709-in;Parent=FBtr0302027;parent_type=mRNA" - - - -	13130	7,395,978 – 7,396,035	+	4	62	63.31	-2.33	0.49	0.994804
9568	dm3.chr3R	7,395,978 – 7,396,035		13131	7,395,978 – 7,396,035	-	4	62	63.31	-1.94	0.48	0.977374
9569	dm3.chr3R	7,411,503 – 7,411,598	- - - intron="intron;ID=intron_CG6791:4_CG6791:5;Name=CG6791-in;Parent=FBtr0082459;parent_type=mRNA" - - - -	13132	7,411,503 – 7,411,598	+	5	102	63.69	-1.93	0.37	0.935101
9570	dm3.chr3R	7,416,136 – 7,416,276	- - - - - - - -	13133	7,416,136 – 7,416,239	-	6	116	92.11	-2.22	0.89	0.956484
9570	dm3.chr3R	7,416,136 – 7,416,276	- - - - - - - -	13134	7,416,172 – 7,416,276	-	6	113	86.11	-1.70	0.81	0.795402
9571	dm3.chr3R	7,420,658 – 7,420,754	- - - intron="intron;ID=intron_FBgn0051363:9_FBgn0051363:7;Name=Jupiter-in;Parent=FBtr0082454;parent_type=mRNA" - - - -	13135	7,420,658 – 7,420,754	+	4	119	84.19	-1.74	0.87	0.907705
9572	dm3.chr3R	7,422,943 – 7,423,037	- - - intron="intron;ID=intron_FBgn0051363:9_FBgn0051363:7;Name=Jupiter-in;Parent=FBtr0082454;parent_type=mRNA" - - - -	13136	7,422,943 – 7,423,037	+	7	105	72.67	-1.89	0.44	0.750889
9573	dm3.chr3R	7,424,728 – 7,424,852	- - - intron="intron;ID=intron_FBgn0051363:9_FBgn0051363:7;Name=Jupiter-in;Parent=FBtr0082454;parent_type=mRNA" - - - -	13137	7,424,728 – 7,424,832	-	9	118	69.43	-2.05	0.29	0.569937
9573	dm3.chr3R	7,424,728 – 7,424,852		13138	7,424,748 – 7,424,852	-	8	107	68.69	-1.70	0.33	0.634529
9574	dm3.chr3R	7,429,162 – 7,429,313	- - - intron="intron;ID=intron_FBgn0051363:9_FBgn0051363:7;Name=Jupiter-in;Parent=FBtr0082454;parent_type=mRNA" - - - -	13139	7,429,162 – 7,429,273	-	6	120	85.37	-1.83	0.74	0.777721
9574	dm3.chr3R	7,429,162 – 7,429,313		13140	7,429,200 – 7,429,313	+	6	120	85.72	-1.41	0.78	0.572639
9575	dm3.chr3R	7,431,898 – 7,431,998	- - - - - - - -	13141	7,431,898 – 7,431,998	+	4	100	96.33	-1.76	0.97	0.929709
9576	dm3.chr3R	7,435,642 – 7,435,732	- - - - - - - -	13142	7,435,642 – 7,435,732	+	4	114	73.23	-1.84	0.69	0.934730
9577	dm3.chr3R	7,437,312 – 7,437,405	- - - - - - - -	13143	7,437,312 – 7,437,405	-	6	100	81.76	-1.59	0.65	0.597514
9578	dm3.chr3R	7,440,768 – 7,440,875	- - - - - - - -	13144	7,440,768 – 7,440,875	-	4	109	92.55	-1.37	0.89	0.546634
9579	dm3.chr3R	7,441,338 – 7,441,430	- - - - - - - -	13145	7,441,338 – 7,441,430	+	5	97	87.43	-1.73	0.74	0.507398
9579	dm3.chr3R	7,441,338 – 7,441,430	- - - - - - - -	13146	7,441,338 – 7,441,430	-	5	97	87.43	-2.52	0.68	0.883092
9580	dm3.chr3R	7,443,844 – 7,443,939	- - - - - - - -	13147	7,443,844 – 7,443,939	-	5	100	91.80	-1.94	0.76	0.513756
9581	dm3.chr3R	7,464,333 – 7,464,435	- - - - - - - -	13148	7,464,333 – 7,464,435	+	9	117	68.28	-1.28	0.43	0.666761
9582	dm3.chr3R	7,467,715 – 7,467,824	- - - - - - - -	13149	7,467,715 – 7,467,824	-	5	111	93.59	-1.21	0.96	0.748707
9583	dm3.chr3R	7,469,906 – 7,469,967	- - - intron="intron;ID=intron_FBgn0259217:14_FBgn0259217:13;Name=Csk-in;Parent=FBtr0299729;parent_type=mRNA" - - - -	13150	7,469,906 – 7,469,967	-	3	63	79.35	-0.70	0.99	0.748069
9584	dm3.chr3R	7,475,685 – 7,475,789	- - - - - - - -	13151	7,475,685 – 7,475,789	+	8	109	72.98	-1.63	0.60	0.967290
9585	dm3.chr3R	7,483,240 – 7,483,337	- - - intron="intron;ID=intron_FBgn0259227:1_FBgn0259227:2;Name=CG42327-in;Parent=FBtr0299789;parent_type=mRNA" - - - -	13152	7,483,240 – 7,483,337	+	6	99	82.53	-1.80	0.61	0.608986
9586	dm3.chr3R	7,483,549 – 7,483,639	- - - intron="intron;ID=intron_FBgn0259227:1_FBgn0259227:2;Name=CG42327-in;Parent=FBtr0299789;parent_type=mRNA" - - - -	13153	7,483,549 – 7,483,639	-	4	90	65.00	-2.44	0.37	0.970542
9587	dm3.chr3R	7,485,928 – 7,486,079	- - - intron="intron;ID=intron_FBgn0259227:1_FBgn0259227:2;Name=CG42327-in;Parent=FBtr0299789;parent_type=mRNA" - - - -	13154	7,485,928 – 7,486,039	-	6	112	85.60	-1.79	0.77	0.823936
9587	dm3.chr3R	7,485,928 – 7,486,079		13155	7,485,968 – 7,486,079	-	7	113	74.09	-1.78	0.39	0.564769
9588	dm3.chr3R	7,504,811 – 7,504,918	- - - - - - - -	13156	7,504,811 – 7,504,918	-	8	107	79.17	-1.44	0.64	0.711992
9589	dm3.chr3R	7,522,021 – 7,522,122	- - - - - - - -	13157	7,522,021 – 7,522,122	-	5	119	57.31	-0.79	0.42	0.599882
9590	dm3.chr3R	7,535,348 – 7,535,445	- - - - - - - -	13158	7,535,348 – 7,535,445	-	5	97	70.64	-1.20	0.53	0.622468
9591	dm3.chr3R	7,539,001 – 7,539,133	- - - - - - - -	13159	7,539,001 – 7,539,095	+	5	120	83.62	-1.69	0.78	0.755124
9591	dm3.chr3R	7,539,001 – 7,539,133	- - - - - - - -	13160	7,539,034 – 7,539,133	+	5	119	87.76	-1.64	0.86	0.809714
9592	dm3.chr3R	7,555,362 – 7,555,473	- - CDS="CDS;ID=CDS_FBgn0037941:4_132;Name=CG12594-cds;Parent=FBtr0082429;parent_type=mRNA" - - - - -	13161	7,555,362 – 7,555,458	-	5	97	85.95	-1.50	0.82	0.676662
9592	dm3.chr3R	7,555,362 – 7,555,473		13162	7,555,383 – 7,555,473	-	5	91	78.80	-1.90	0.67	0.879737
9593	dm3.chr3R	7,575,280 – 7,575,414	- - - - - - - -	13163	7,575,280 – 7,575,386	+	7	113	65.14	-1.63	0.46	0.981147
				13164	7,575,280 – 7,575,386	-	7	113	65.14	-2.04	0.47	0.996165
				13165	7,575,316 – 7,575,414	+	7	114	64.92	-2.08	0.42	0.986855
				13166	7,575,316 – 7,575,414	-	7	114	64.92	-2.42	0.48	0.998401
9594	dm3.chr3R	7,578,995 – 7,579,182	- - CDS="CDS;ID=CDS_CG17342:6_41;Name=Lk6-cds;Parent=FBtr0082534,FBtr0082535;parent_type=mRNA" - - - - -	13167	7,578,995 – 7,579,087	+	8	99	78.03	-3.06	0.56	0.995904
9594	dm3.chr3R	7,578,995 – 7,579,182		13168	7,579,087 – 7,579,182	+	12	120	79.81	-2.19	0.45	0.612659
9595	dm3.chr3R	7,580,033 – 7,580,143	- - CDS="CDS;ID=CDS_CG17342:6_41;Name=Lk6-cds;Parent=FBtr0082534,FBtr0082535;parent_type=mRNA" - - - - -	13169	7,580,033 – 7,580,143	+	7	110	83.51	-1.99	0.58	0.559531
9596	dm3.chr3R	7,584,229 – 7,584,329	- - - intron="intron;ID=intron_CG17342:7_CG17342:2;Name=Lk6-in;Parent=FBtr0082535;parent_type=mRNA" - - - -	13170	7,584,229 – 7,584,329	+	5	103	68.02	-1.98	0.37	0.645608
9597	dm3.chr3R	7,586,220 – 7,586,413	- - - - - - - -	13171	7,586,220 – 7,586,322	-	6	103	75.80	-2.23	0.47	0.926010
9597	dm3.chr3R	7,586,220 – 7,586,413	- - - - - - - -	13172	7,586,322 – 7,586,413	-	7	113	59.93	-1.89	0.28	0.759145
9598	dm3.chr3R	7,587,635 – 7,587,696	- - - - - - - -	13173	7,587,635 – 7,587,696	+	6	70	69.98	-0.92	0.62	0.753136
9598	dm3.chr3R	7,587,635 – 7,587,696	- - - - - - - -	13174	7,587,635 – 7,587,696	-	6	70	69.98	-1.24	0.57	0.840822
9599	dm3.chr3R	7,588,378 – 7,588,477	- - - - - - - -	13175	7,588,378 – 7,588,477	-	6	121	73.59	-1.21	0.66	0.769022
9600	dm3.chr3R	7,599,747 – 7,599,860	- - - - - - - -	13176	7,599,747 – 7,599,860	+	5	115	59.44	-1.77	0.31	0.868742
9601	dm3.chr3R	7,600,792 – 7,600,902	- - - - - - - -	13177	7,600,792 – 7,600,902	+	5	120	79.95	-1.44	0.69	0.624052
9602	dm3.chr3R	7,607,677 – 7,607,779	- - - intron="intron;ID=intron_CG17360:9_CG17360:10;Name=CG17360-in;Parent=FBtr0082531;parent_type=mRNA" - - - -	13178	7,607,677 – 7,607,779	-	11	109	65.47	-0.86	0.42	0.751822
9603	dm3.chr3R	7,626,549 – 7,626,642	- - - - - - - -	13179	7,626,549 – 7,626,642	-	11	114	59.21	-0.40	0.71	0.980252
9604	dm3.chr3R	7,633,533 – 7,633,615	- - - - - - - -	13180	7,633,533 – 7,633,615	+	7	89	63.93	-2.56	0.47	0.999228
9605	dm3.chr3R	7,634,857 – 7,635,007	- - - - - - - -	13181	7,634,857 – 7,634,933	+	7	85	68.90	-2.42	0.29	0.756980
9605	dm3.chr3R	7,634,857 – 7,635,007	- - - - - - - -	13182	7,634,933 – 7,635,007	-	4	84	58.69	-1.18	0.56	0.920745
9606	dm3.chr3R	7,655,894 – 7,655,948	- - - intron="intron;ID=intron_FBgn0037956:2_FBgn0037956:1;Name=CG6959-in;Parent=FBtr0082517,FBtr0299594;parent_type=mRNA" - - - -	13183	7,655,894 – 7,655,948	+	5	57	89.86	-2.84	0.74	0.962036
9606	dm3.chr3R	7,655,894 – 7,655,948		13184	7,655,894 – 7,655,948	-	5	57	89.86	-2.11	0.71	0.589433
9607	dm3.chr3R	7,671,766 – 7,671,864	- - - intron="intron;ID=intron_FBgn0037956:3_FBgn0037956:2;Name=CG6959-in;Parent=FBtr0299594;parent_type=mRNA" - - - -	13185	7,671,766 – 7,671,864	-	3	107	60.95	-1.72	0.49	0.927521
9608	dm3.chr3R	7,673,767 – 7,673,879	- - - intron="intron;ID=intron_FBgn0037956:3_FBgn0037956:2;Name=CG6959-in;Parent=FBtr0299594;parent_type=mRNA" - - - -	13186	7,673,767 – 7,673,879	-	5	115	83.33	-2.05	0.72	0.895850
9609	dm3.chr3R	7,688,051 – 7,688,117	- - - intron="intron;ID=intron_FBgn0037956:4_FBgn0037956:3;Name=CG6959-in;Parent=FBtr0299594;parent_type=mRNA" - - - -	13187	7,688,051 – 7,688,117	-	10	75	81.49	-1.22	0.78	0.729304
9610	dm3.chr3R	7,692,898 – 7,693,007	- - - intron="intron;ID=intron_FBgn0037956:4_FBgn0037956:3;Name=CG6959-in;Parent=FBtr0299594;parent_type=mRNA" - - - -	13188	7,692,898 – 7,693,007	+	8	119	75.57	-1.91	0.42	0.633753
9611	dm3.chr3R	7,697,127 – 7,697,225	- - - - - - - -	13189	7,697,127 – 7,697,225	+	5	109	85.21	-2.47	0.73	0.953305
9612	dm3.chr3R	7,697,781 – 7,697,877	- - - - - - - -	13190	7,697,781 – 7,697,877	-	6	120	71.73	-1.17	0.60	0.777250
9613	dm3.chr3R	7,700,898 – 7,700,992	- - - - - - - -	13191	7,700,898 – 7,700,992	+	6	115	63.46	-1.22	0.46	0.799519
9614	dm3.chr3R	7,703,848 – 7,703,963	- - CDS="CDS;ID=CDS_CG14728:2_92;Name=sad-cds;Parent=FBtr0082475;parent_type=mRNA" - - - - -	13192	7,703,848 – 7,703,963	-	14	118	78.00	-1.58	0.42	0.500000
9615	dm3.chr3R	7,712,994 – 7,713,048	- - - - - - - -	13193	7,712,994 – 7,713,048	-	4	54	90.06	-1.75	0.83	0.698843
9616	dm3.chr3R	7,713,293 – 7,713,345	- - - - - - - -	13194	7,713,293 – 7,713,345	+	6	57	84.60	-1.03	0.89	0.670877
9617	dm3.chr3R	7,720,608 – 7,720,707	- - CDS="CDS;ID=CDS_FBgn0037963:3_170;Name=Cad87A-cds;Parent=FBtr0082513;parent_type=mRNA" - - - - -	13195	7,720,608 – 7,720,707	-	6	120	69.43	-1.17	0.52	0.618243
9618	dm3.chr3R	7,739,581 – 7,739,638	- - - - - - - -	13196	7,739,581 – 7,739,638	+	10	71	70.53	-0.62	0.65	0.685612
9619	dm3.chr3R	7,742,041 – 7,742,133	- - - - - - - -	13197	7,742,041 – 7,742,133	-	8	107	75.04	-1.52	0.51	0.535996
9620	dm3.chr3R	7,743,393 – 7,743,501	- - - - - - - -	13198	7,743,393 – 7,743,501	-	4	111	81.13	-2.87	0.59	0.972136
9621	dm3.chr3R	7,747,640 – 7,747,776	- - - - - - - -	13199	7,747,640 – 7,747,776	-	5	136	91.36	-2.13	0.71	0.518007
9622	dm3.chr3R	7,750,569 – 7,750,697	- - - - - - - -	13200	7,750,569 – 7,750,663	+	7	104	63.52	-0.62	0.51	0.735663
9622	dm3.chr3R	7,750,569 – 7,750,697	- - - - - - - -	13201	7,750,600 – 7,750,697	+	7	103	61.12	-2.67	0.49	0.999836
9623	dm3.chr3R	7,751,433 – 7,751,525	- - - - - - - -	13202	7,751,433 – 7,751,525	+	7	108	79.76	-2.09	0.54	0.797691
9624	dm3.chr3R	7,752,165 – 7,752,266	- - - - - - - -	13203	7,752,165 – 7,752,266	-	12	118	77.11	-1.42	0.54	0.624368
9625	dm3.chr3R	7,754,067 – 7,754,158	- - - - - - - -	13204	7,754,067 – 7,754,158	-	8	120	73.35	-1.65	0.46	0.500000
9626	dm3.chr3R	7,761,794 – 7,761,886	- - - - - - - -	13205	7,761,794 – 7,761,886	-	6	93	80.22	-2.98	0.59	0.994665
9627	dm3.chr3R	7,765,469 – 7,765,566	- - - - - - - -	13206	7,765,469 – 7,765,566	-	9	115	53.84	-1.78	0.19	0.778404
9628	dm3.chr3R	7,778,802 – 7,778,894	- - - - - - - -	13207	7,778,802 – 7,778,894	+	12	103	66.29	-1.93	0.45	0.996033
9629	dm3.chr3R	7,792,986 – 7,793,101	- - CDS="CDS;ID=CDS_FBgn0037968:7_132;Name=CG12213-cds;Parent=FBtr0082509,FBtr0082510,FBtr0113223;parent_type=mRNA" - - - - -	13208	7,792,986 – 7,793,101	-	11	115	73.55	-1.61	0.40	0.749345
9630	dm3.chr3R	7,853,305 – 7,853,405	- - - - - - - -	13209	7,853,305 – 7,853,405	+	8	109	73.31	-2.08	0.64	0.994124
9630	dm3.chr3R	7,853,305 – 7,853,405	- - - - - - - -	13210	7,853,305 – 7,853,405	-	8	109	73.31	-2.14	0.38	0.825519
9631	dm3.chr3R	7,856,050 – 7,856,149	- - CDS="CDS;ID=CDS_FBgn0051358:1_116;Name=CG31358-cds;Parent=FBtr0082554;parent_type=mRNA" - - - - -	13211	7,856,050 – 7,856,149	+	6	119	67.89	-1.02	0.53	0.621191
9632	dm3.chr3R	7,857,898 – 7,857,996	- - - - - - - -	13212	7,857,898 – 7,857,996	+	6	100	82.19	-1.37	1.01	0.968052
9633	dm3.chr3R	7,875,509 – 7,875,602	- - - - - - - -	13213	7,875,509 – 7,875,602	+	12	110	68.27	-0.72	0.47	0.542473
9634	dm3.chr3R	7,878,038 – 7,878,145	- - - - - - - -	13214	7,878,038 – 7,878,145	+	12	120	83.75	-1.31	0.70	0.514669
9635	dm3.chr3R	7,896,157 – 7,896,267	- - - intron="intron;ID=intron_FBgn0037989:4_FBgn0037989:3;Name=CG14741-in;Parent=FBtr0300351;parent_type=mRNA" - - - -	13215	7,896,157 – 7,896,267	+	4	119	59.16	-1.09	0.52	0.934852
9636	dm3.chr3R	7,903,709 – 7,903,829	- - - - - - - -	13216	7,903,709 – 7,903,829	+	3	120	96.39	-1.70	0.99	0.938826
9637	dm3.chr3R	7,907,308 – 7,907,412	- - - - - - - -	13217	7,907,308 – 7,907,412	+	5	104	89.71	-2.21	0.85	0.949337
9637	dm3.chr3R	7,907,308 – 7,907,412	- - - - - - - -	13218	7,907,308 – 7,907,412	-	5	104	89.71	-1.57	0.88	0.806772
9638	dm3.chr3R	7,908,561 – 7,908,658	- - - - - - - -	13219	7,908,561 – 7,908,658	-	10	107	68.07	-0.72	0.47	0.603362
9639	dm3.chr3R	7,915,627 – 7,915,721	- - - - - - - -	13220	7,915,627 – 7,915,721	+	5	118	62.89	-0.56	0.65	0.876683
9639	dm3.chr3R	7,915,627 – 7,915,721	- - - - - - - -	13221	7,915,627 – 7,915,721	-	5	118	62.89	-1.65	0.62	0.995584
9640	dm3.chr3R	7,922,761 – 7,922,858	- - - intron="intron;ID=intron_FBgn0051361:2_FBgn0051361:4;Name=dpr17-in;Parent=FBtr0082542;parent_type=mRNA" - - - -	13222	7,922,761 – 7,922,858	+	8	108	72.35	-2.30	0.38	0.920497
9640	dm3.chr3R	7,922,761 – 7,922,858		13223	7,922,761 – 7,922,858	-	8	108	72.35	-2.48	0.56	0.997162
9641	dm3.chr3R	7,934,090 – 7,934,196	- - - intron="intron;ID=intron_FBgn0051361:4_FBgn0051361:5;Name=dpr17-in;Parent=FBtr0082542,FBtr0082543,FBtr0300126;parent_type=mRNA" - - - -	13224	7,934,090 – 7,934,196	+	8	119	80.74	-1.85	0.57	0.682217
9642	dm3.chr3R	7,957,023 – 7,957,165	FBnoncoding="tRNA;ID=FBtr0082544;Name=tRNA:K5:87BC-RA;Parent=FBgn0011905;Dbxref=FlyBase_Annotation_IDs:CR31197-RA;score_text=Weakly" tRNAscann="Lys_chr3R_trna9" - - "Rfam_10.0=RF00005;tRNA;AAJJ01001092.1/1840-1912\|1.0e-29" "Noncode_2.0=n103595_u102693_DQ614086_piRNA_Norway\|4.8e-07" "unique_Noncode_2.0=u102692_piRNA_Norway\|4.2e-07" -	13225	7,957,023 – 7,957,165	+	11	153	67.76	-1.66	0.74	0.998705
9642	dm3.chr3R	7,957,023 – 7,957,165		13226	7,957,023 – 7,957,165	-	11	153	67.76	-1.83	0.80	0.998931
9643	dm3.chr3R	7,965,228 – 7,965,294	- - - - - - - -	13227	7,965,228 – 7,965,294	-	7	68	71.64	-0.70	0.65	0.780942
9644	dm3.chr3R	7,969,841 – 7,969,893	- - - - - - - -	13228	7,969,841 – 7,969,893	+	9	52	96.58	-1.39	0.92	0.613964
9645	dm3.chr3R	7,973,107 – 7,973,214	- - - intron="intron;ID=intron_CG10095:3_CG10095:4;Name=dpr15-in;Parent=FBtr0082549;parent_type=mRNA" - - - -	13229	7,973,107 – 7,973,214	+	11	113	80.98	-1.87	0.58	0.751209
9646	dm3.chr3R	7,979,617 – 7,979,667	- - - intron="intron;ID=intron_CG10095:2_CG10095:3;Name=dpr15-in;Parent=FBtr0082549;parent_type=mRNA" - - - -	13230	7,979,617 – 7,979,667	+	6	50	81.60	-2.04	0.62	0.817894
9647	dm3.chr3R	7,982,947 – 7,983,037	- - - intron="intron;ID=intron_CG10095:1_CG10095:2;Name=dpr15-in;Parent=FBtr0082549;parent_type=mRNA" - - - -	13231	7,982,947 – 7,983,037	-	5	98	93.56	-2.79	0.80	0.955770
9648	dm3.chr3R	8,000,361 – 8,000,468	- - - - - - - -	13232	8,000,361 – 8,000,468	-	11	120	76.19	-1.88	0.51	0.845428
9649	dm3.chr3R	8,017,649 – 8,017,707	- - - - - - - -	13233	8,017,649 – 8,017,707	+	3	64	92.71	-1.55	0.86	0.508116
9649	dm3.chr3R	8,017,649 – 8,017,707	- - - - - - - -	13234	8,017,649 – 8,017,707	-	3	64	92.71	-2.86	0.95	0.994258
9650	dm3.chr3R	8,022,729 – 8,022,789	- - - - - - - -	13235	8,022,729 – 8,022,789	-	5	60	96.67	-3.09	1.00	0.997233
9651	dm3.chr3R	8,029,524 – 8,029,655	- - - - - - - -	13236	8,029,524 – 8,029,616	+	11	109	72.12	-1.81	0.34	0.536689
				13237	8,029,524 – 8,029,616	-	11	109	72.12	-1.97	0.38	0.841562
				13238	8,029,547 – 8,029,655	+	12	120	83.76	-2.26	0.54	0.780915
				13239	8,029,547 – 8,029,655	-	12	120	83.76	-2.38	0.60	0.927720
9652	dm3.chr3R	8,037,320 – 8,037,483	- - - - - - - -	13240	8,037,320 – 8,037,417	+	5	120	81.71	-2.68	0.57	0.952334
9652	dm3.chr3R	8,037,320 – 8,037,483	- - - - - - - -	13241	8,037,377 – 8,037,483	+	5	120	84.88	-1.92	0.66	0.517957
9653	dm3.chr3R	8,045,190 – 8,045,316	- - CDS="CDS;ID=CDS_CG4848:1_38;Name=CG4848-cds;Parent=FBtr0082624;parent_type=mRNA" - - - - -	13242	8,045,190 – 8,045,304	+	13	120	80.65	-2.20	0.60	0.963029
9653	dm3.chr3R	8,045,190 – 8,045,316		13243	8,045,196 – 8,045,316	+	13	120	80.10	-1.81	0.59	0.898326
9654	dm3.chr3R	8,054,536 – 8,054,628	- - - - - - - -	13244	8,054,536 – 8,054,628	+	12	114	60.41	-1.32	0.29	0.572718
9655	dm3.chr3R	8,056,299 – 8,056,390	- - - - - - - -	13245	8,056,299 – 8,056,390	-	12	117	73.77	-1.30	0.52	0.732201
9656	dm3.chr3R	8,065,823 – 8,065,964	- - - - - - - -	13246	8,065,823 – 8,065,930	+	6	114	81.77	-2.44	0.64	0.957593
9656	dm3.chr3R	8,065,823 – 8,065,964	- - - - - - - -	13247	8,065,863 – 8,065,964	+	7	117	75.97	-1.30	0.58	0.537862
9657	dm3.chr3R	8,067,914 – 8,068,024	- - - - - - - -	13248	8,067,914 – 8,068,024	+	12	120	92.98	-1.61	0.82	0.507401
9658	dm3.chr3R	8,074,935 – 8,075,038	- - - - - - - -	13249	8,074,935 – 8,075,038	-	5	103	62.04	-0.62	0.52	0.608157
9659	dm3.chr3R	8,075,783 – 8,075,852	- - - - - - - -	13250	8,075,783 – 8,075,852	-	7	74	69.57	-1.05	0.57	0.893408
9660	dm3.chr3R	8,079,568 – 8,079,658	- - - - - - - -	13251	8,079,568 – 8,079,658	-	11	114	72.24	-1.64	0.55	0.951088
9661	dm3.chr3R	8,089,418 – 8,089,526	- - - intron="intron;ID=intron_FBgn0003651:1_FBgn0003651:4;Name=svp-in;Parent=FBtr0082562;parent_type=mRNA" - - - -	13252	8,089,418 – 8,089,526	-	8	109	89.20	-1.53	0.87	0.796105
9662	dm3.chr3R	8,091,360 – 8,091,451	- - - intron="intron;ID=intron_FBgn0003651:1_FBgn0003651:4;Name=svp-in;Parent=FBtr0082562;parent_type=mRNA" - - - -	13253	8,091,360 – 8,091,451	+	10	98	67.34	-1.87	0.39	0.969023
9663	dm3.chr3R	8,091,843 – 8,091,941	- - - intron="intron;ID=intron_FBgn0003651:1_FBgn0003651:4;Name=svp-in;Parent=FBtr0082562;parent_type=mRNA" - - - -	13254	8,091,843 – 8,091,941	+	5	100	81.39	-0.81	0.88	0.606662
9664	dm3.chr3R	8,093,171 – 8,093,268	- - - intron="intron;ID=intron_FBgn0003651:1_FBgn0003651:4;Name=svp-in;Parent=FBtr0082562;parent_type=mRNA" - - - -	13255	8,093,171 – 8,093,268	+	12	118	72.79	-1.57	0.57	0.940782
9665	dm3.chr3R	8,095,425 – 8,095,529	- - - intron="intron;ID=intron_FBgn0003651:1_FBgn0003651:4;Name=svp-in;Parent=FBtr0082562;parent_type=mRNA" - - - -	13256	8,095,425 – 8,095,529	+	9	116	84.49	-1.21	0.84	0.749063
9666	dm3.chr3R	8,097,888 – 8,097,981	- - - intron="intron;ID=intron_FBgn0003651:1_FBgn0003651:4;Name=svp-in;Parent=FBtr0082562;parent_type=mRNA" - - - -	13257	8,097,888 – 8,097,981	-	12	118	83.26	-1.97	0.63	0.761075
9667	dm3.chr3R	8,099,655 – 8,099,775	- - - intron="intron;ID=intron_FBgn0003651:1_FBgn0003651:4;Name=svp-in;Parent=FBtr0082562;parent_type=mRNA" - - - -	13258	8,099,655 – 8,099,775	+	12	120	99.72	-0.91	0.99	0.512187
9668	dm3.chr3R	8,105,414 – 8,105,467	- - - intron="intron;ID=intron_FBgn0003651:1_FBgn0003651:4;Name=svp-in;Parent=FBtr0082562;parent_type=mRNA" - - - -	13259	8,105,414 – 8,105,467	+	8	53	94.54	-1.67	0.83	0.500000
9669	dm3.chr3R	8,108,143 – 8,108,208	- - - intron="intron;ID=intron_FBgn0003651:3_FBgn0003651:4;Name=svp-in;Parent=FBtr0082564;parent_type=mRNA" - - - -	13260	8,108,143 – 8,108,208	+	5	65	95.08	-2.21	0.84	0.844180
9669	dm3.chr3R	8,108,143 – 8,108,208		13261	8,108,143 – 8,108,208	-	5	65	95.08	-1.86	0.91	0.870318
9670	dm3.chr3R	8,111,606 – 8,111,712	- - - intron="intron;ID=intron_FBgn0003651:3_FBgn0003651:4;Name=svp-in;Parent=FBtr0082564;parent_type=mRNA" - - - -	13262	8,111,606 – 8,111,712	+	6	116	61.81	-2.06	0.40	0.976370
9670	dm3.chr3R	8,111,606 – 8,111,712		13263	8,111,606 – 8,111,712	-	6	116	61.81	-1.21	0.50	0.920899
9671	dm3.chr3R	8,114,360 – 8,114,483	- - - intron="intron;ID=intron_FBgn0003651:3_FBgn0003651:4;Name=svp-in;Parent=FBtr0082564;parent_type=mRNA" - - - -	13264	8,114,360 – 8,114,458	+	5	98	89.60	-2.36	0.70	0.746510
				13265	8,114,392 – 8,114,483	+	8	100	80.76	-1.23	0.73	0.599034
				13266	8,114,392 – 8,114,483	-	8	100	80.76	-1.16	0.82	0.771870
9672	dm3.chr3R	8,123,880 – 8,123,975	- - - intron="intron;ID=intron_FBgn0003651:5_FBgn0003651:7;Name=svp-in;Parent=FBtr0082562,FBtr0082564;parent_type=mRNA" - - - -	13267	8,123,880 – 8,123,975	+	9	109	72.73	-1.97	0.47	0.900107
9673	dm3.chr3R	8,124,922 – 8,125,021	- - - intron="intron;ID=intron_FBgn0003651:5_FBgn0003651:7;Name=svp-in;Parent=FBtr0082562,FBtr0082564;parent_type=mRNA" - - - -	13268	8,124,922 – 8,125,021	+	9	102	82.05	-2.08	0.58	0.792454
9673	dm3.chr3R	8,124,922 – 8,125,021		13269	8,124,922 – 8,125,021	-	9	102	82.05	-1.34	0.71	0.576105
9674	dm3.chr3R	8,127,191 – 8,127,289	- - - - - - - -	13270	8,127,191 – 8,127,289	-	5	98	98.37	-2.34	0.99	0.984947
9675	dm3.chr3R	8,133,384 – 8,133,483	- - - - - - - -	13271	8,133,384 – 8,133,483	+	5	99	96.57	-1.11	0.99	0.751128
9676	dm3.chr3R	8,148,264 – 8,148,356	FBnoncoding="tRNA;ID=FBtr0082616;Name=tRNA:CR31432-RA;Parent=FBgn0051432;Alias=CR31432-RA;Dbxref=FlyBase_Annotation_IDs:CR31432-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna61" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000381.1/59414-59485\|4.1e-34" - - -	13272	8,148,264 – 8,148,356	+	12	102	82.87	-2.92	0.90	0.998017
9676	dm3.chr3R	8,148,264 – 8,148,356		13273	8,148,264 – 8,148,356	-	12	102	82.87	-1.71	0.96	0.982662
9677	dm3.chr3R	8,161,969 – 8,162,060	- - - - - - - -	13274	8,161,969 – 8,162,060	+	10	121	57.50	-1.36	0.47	0.982610
9678	dm3.chr3R	8,163,398 – 8,163,492	- - - - - - - -	13275	8,163,398 – 8,163,492	+	7	113	71.38	-1.62	0.42	0.592991
9678	dm3.chr3R	8,163,398 – 8,163,492	- - - - - - - -	13276	8,163,398 – 8,163,492	-	7	113	71.38	-1.63	0.62	0.971047
9679	dm3.chr3R	8,164,043 – 8,164,139	- - - - - - - -	13277	8,164,043 – 8,164,136	-	10	113	61.92	-1.29	0.39	0.826702
9679	dm3.chr3R	8,164,043 – 8,164,139	- - - - - - - -	13278	8,164,046 – 8,164,139	-	10	115	62.55	-1.40	0.37	0.800823
9680	dm3.chr3R	8,171,129 – 8,171,232	- - - - - - - -	13279	8,171,129 – 8,171,232	+	6	105	78.45	-1.79	0.65	0.883286
9680	dm3.chr3R	8,171,129 – 8,171,232	- - - - - - - -	13280	8,171,129 – 8,171,232	-	6	105	78.45	-2.28	0.65	0.975506
9681	dm3.chr3R	8,180,412 – 8,180,526	- - CDS="CDS;ID=CDS_FBgn0038016:4_92;Name=MBD-R2-cds;Parent=FBtr0082612;parent_type=mRNA" - - - - -	13281	8,180,412 – 8,180,526	+	13	114	79.31	-1.62	0.46	0.530894
9682	dm3.chr3R	8,185,023 – 8,185,297	- - - - - - - -	13282	8,185,023 – 8,185,190	+	6	178	75.43	-2.05	0.50	0.916814
				13283	8,185,190 – 8,185,297	+	3	118	72.86	-1.64	0.74	0.886470
				13284	8,185,190 – 8,185,297	-	3	118	72.86	-2.57	0.54	0.945766
9683	dm3.chr3R	8,212,433 – 8,212,526	- - - intron="intron;ID=intron_FBgn0085431:2_FBgn0085431:5;Name=CG34402-in;Parent=FBtr0112654;parent_type=mRNA" - - - -	13285	8,212,433 – 8,212,526	-	8	112	68.60	-1.70	0.39	0.775432
9684	dm3.chr3R	8,214,549 – 8,214,640	- - - - - - - -	13286	8,214,549 – 8,214,640	-	11	97	72.27	-1.05	0.46	0.580539
9685	dm3.chr3R	8,239,463 – 8,239,520	- - - - - - - -	13287	8,239,463 – 8,239,520	-	6	64	66.93	-0.83	0.53	0.612275
9686	dm3.chr3R	8,268,539 – 8,268,657	- - - intron="intron;ID=intron_CG5887:7_CG5887:2;Name=desat1-in;Parent=FBtr0082628;parent_type=mRNA" - - - -	13288	8,268,539 – 8,268,657	-	6	120	82.53	-1.72	0.60	0.534392
9687	dm3.chr3R	8,268,961 – 8,269,058	- - - intron="intron;ID=intron_CG5887:7_CG5887:2;Name=desat1-in;Parent=FBtr0082628;parent_type=mRNA" - - - -	13289	8,268,961 – 8,269,058	-	5	100	63.32	-1.67	0.34	0.748745
9688	dm3.chr3R	8,269,508 – 8,269,641	- - - intron="intron;ID=intron_CG5887:8_CG5887:2;Name=desat1-in;Parent=FBtr0082629;parent_type=mRNA" - - - -	13290	8,269,508 – 8,269,641	+	6	136	79.50	-2.10	0.59	0.915718
9688	dm3.chr3R	8,269,508 – 8,269,641		13291	8,269,508 – 8,269,641	-	6	136	79.50	-2.97	0.67	0.997126
9689	dm3.chr3R	8,271,309 – 8,271,402	- - - intron="intron;ID=intron_CG5887:2_CG5887:3;Name=desat1-in;Parent=FBtr0082626,FBtr0082627,FBtr0082628,FBtr0082629,FBtr0082630;parent_type=mRNA" - - - -	13292	8,271,309 – 8,271,402	-	8	108	68.90	-3.01	0.16	0.634212
9690	dm3.chr3R	8,274,112 – 8,274,213	- - CDS="CDS;ID=CDS_CG5538:2_86;Name=CG5538-cds;Parent=FBtr0082631;parent_type=mRNA" - - - - -	13293	8,274,112 – 8,274,213	+	5	119	66.55	-1.32	0.47	0.570866
9690	dm3.chr3R	8,274,112 – 8,274,213		13294	8,274,112 – 8,274,213	-	5	119	66.55	-1.53	0.50	0.838775
9691	dm3.chr3R	8,276,684 – 8,276,774	- - - intron="intron;ID=intron_CG18549:1_CG18549:2;Name=CG18549-in;Parent=FBtr0082632;parent_type=mRNA" - - - -	13295	8,276,684 – 8,276,774	-	4	99	83.54	-2.03	0.65	0.633812
9692	dm3.chr3R	8,282,656 – 8,282,752	- - CDS="CDS;ID=CDS_FBgn0038055:2_221;Name=trus-cds;Parent=FBtr0082634;parent_type=mRNA" - - - - -	13296	8,282,656 – 8,282,752	+	13	111	68.71	-1.77	0.29	0.513071
9693	dm3.chr3R	8,340,164 – 8,340,260	- - - intron="intron;ID=intron_FBgn0250910:4_FBgn0250910:3;Name=Octbeta3R-in;Parent=FBtr0290334;parent_type=mRNA" - - - -	13297	8,340,164 – 8,340,260	+	6	107	68.86	-1.74	0.45	0.914679
9693	dm3.chr3R	8,340,164 – 8,340,260		13298	8,340,164 – 8,340,260	-	6	107	68.86	-2.49	0.32	0.922166
9694	dm3.chr3R	8,351,422 – 8,351,517	- - - intron="intron;ID=intron_FBgn0250910:11_FBgn0250910:10;Name=Octbeta3R-in;Parent=FBtr0290334,FBtr0290335,FBtr0301944;parent_type=mRNA" - - - -	13299	8,351,422 – 8,351,517	+	4	112	73.96	-1.78	0.55	0.799504
9695	dm3.chr3R	8,352,435 – 8,352,521	- - - intron="intron;ID=intron_FBgn0028374:1_FBgn0028374:2;Name=hug-in;Parent=FBtr0082639;parent_type=mRNA" - - - -	13300	8,352,435 – 8,352,521	+	5	87	93.97	-2.23	0.80	0.788517
9696	dm3.chr3R	8,357,488 – 8,357,590	- - - - - - - -	13301	8,357,488 – 8,357,590	+	7	102	72.11	-1.67	0.54	0.902430
9697	dm3.chr3R	8,364,098 – 8,364,180	- - - - - - - -	13302	8,364,098 – 8,364,180	+	6	92	75.61	-1.51	0.60	0.791685
9697	dm3.chr3R	8,364,098 – 8,364,180	- - - - - - - -	13303	8,364,098 – 8,364,180	-	6	92	75.61	-1.93	0.66	0.970879
9698	dm3.chr3R	8,364,917 – 8,365,010	- - - - - - - -	13304	8,364,917 – 8,365,010	+	4	93	84.50	-2.44	0.72	0.941175
9699	dm3.chr3R	8,369,035 – 8,369,119	- - - - - - - -	13305	8,369,035 – 8,369,119	-	6	99	79.03	-2.44	0.45	0.750232
9700	dm3.chr3R	8,371,486 – 8,371,539	- - - - - - - -	13306	8,371,486 – 8,371,539	+	6	53	82.89	-1.95	0.59	0.693440
9701	dm3.chr3R	8,377,236 – 8,377,335	FBnoncoding="pre_miRNA;ID=FBtr0304230;Name=mir-284-RM;Parent=FBgn0262383;Alias=CR42906-RM;Dbxref=FlyBase_Annotation_IDs:CR42906-RM,miRBase:MI0000369" - - - - - - "mirBase_v16=dme-mir-284\|6.6e-52"	13307	8,377,236 – 8,377,335	+	12	120	89.40	-2.37	0.87	0.978681
9701	dm3.chr3R	8,377,236 – 8,377,335		13308	8,377,236 – 8,377,335	-	12	120	89.40	-3.33	0.90	0.997760
9702	dm3.chr3R	8,392,715 – 8,392,815	- - - intron="intron;ID=intron_FBgn0038063:11_FBgn0038063:10;Name=Octbeta2R-in;Parent=FBtr0304846;parent_type=mRNA" - - - -	13309	8,392,715 – 8,392,815	-	12	118	72.49	-1.93	0.42	0.845708
9703	dm3.chr3R	8,400,802 – 8,400,919	- - - intron="intron;ID=intron_FBgn0038063:11_FBgn0038063:10;Name=Octbeta2R-in;Parent=FBtr0304846;parent_type=mRNA" - - - -	13310	8,400,802 – 8,400,919	+	5	119	82.27	-2.05	0.55	0.549789
9704	dm3.chr3R	8,403,569 – 8,403,664	- - - intron="intron;ID=intron_FBgn0038063:11_FBgn0038063:10;Name=Octbeta2R-in;Parent=FBtr0304846;parent_type=mRNA" - - - -	13311	8,403,569 – 8,403,664	-	12	120	81.95	-2.17	0.62	0.906317
9705	dm3.chr3R	8,415,519 – 8,415,609	- - - intron="intron;ID=intron_FBgn0038063:11_FBgn0038063:10;Name=Octbeta2R-in;Parent=FBtr0304846;parent_type=mRNA" - - - -	13312	8,415,519 – 8,415,609	-	8	103	57.70	-1.52	0.28	0.577134
9706	dm3.chr3R	8,418,096 – 8,418,191	- - - intron="intron;ID=intron_FBgn0038063:11_FBgn0038063:10;Name=Octbeta2R-in;Parent=FBtr0304846;parent_type=mRNA" - - - -	13313	8,418,096 – 8,418,191	+	9	114	65.00	-1.71	0.34	0.850924
9707	dm3.chr3R	8,419,650 – 8,419,746	- - - - - - - -	13314	8,419,650 – 8,419,746	+	7	107	87.70	-2.32	0.57	0.534401
9707	dm3.chr3R	8,419,650 – 8,419,746	- - - - - - - -	13315	8,419,650 – 8,419,746	-	7	107	87.70	-3.07	0.70	0.987178
9708	dm3.chr3R	8,421,205 – 8,421,299	- - - - - - - -	13316	8,421,205 – 8,421,299	+	4	107	76.25	-1.64	0.62	0.625183
9709	dm3.chr3R	8,421,540 – 8,421,718	- - - - - - - -	13317	8,421,540 – 8,421,650	+	4	116	94.84	-0.89	0.98	0.571093
				13318	8,421,614 – 8,421,711	-	5	115	87.48	-1.51	0.82	0.589533
				13319	8,421,621 – 8,421,718	-	5	115	87.29	-2.01	0.79	0.849205
9710	dm3.chr3R	8,424,276 – 8,424,377	- - - - - - - -	13320	8,424,276 – 8,424,377	+	5	106	91.88	-1.64	0.88	0.759199
9711	dm3.chr3R	8,435,578 – 8,435,670	- - - - - - - -	13321	8,435,578 – 8,435,670	+	8	109	68.91	-1.23	0.55	0.896318
9712	dm3.chr3R	8,441,937 – 8,442,041	- - - - - - - -	13322	8,441,937 – 8,442,041	-	6	109	79.08	-1.27	0.68	0.643798
9713	dm3.chr3R	8,446,284 – 8,446,351	- - - - - - - -	13323	8,446,284 – 8,446,351	+	7	67	71.46	-0.81	0.63	0.803530
9714	dm3.chr3R	8,451,482 – 8,451,602	- - CDS="CDS;ID=CDS_FBgn0005671:3_194;Name=Vha55-cds;Parent=FBtr0082670,FBtr0082671,FBtr0301661;parent_type=mRNA" - - - - -	13324	8,451,482 – 8,451,602	-	15	120	88.75	-1.68	0.80	0.794190
9715	dm3.chr3R	8,453,422 – 8,453,530	- - - - - - - -	13325	8,453,422 – 8,453,530	-	11	114	68.52	-0.85	0.45	0.561177
9716	dm3.chr3R	8,469,699 – 8,469,806	- - - - - - - -	13326	8,469,699 – 8,469,806	-	5	115	84.98	-1.41	0.82	0.666283
9717	dm3.chr3R	8,473,852 – 8,473,946	- - - - - - - -	13327	8,473,852 – 8,473,946	+	6	107	71.17	-1.17	0.50	0.515373
9718	dm3.chr3R	8,475,811 – 8,475,863	- - - intron="intron;ID=intron_CG6234:1_CG6234:2;Name=CG6234-in;Parent=FBtr0082648;parent_type=mRNA" - - - -	13328	8,475,811 – 8,475,863	+	3	52	94.87	-0.84	0.99	0.573651
9719	dm3.chr3R	8,487,537 – 8,487,637	- - - - - - - -	13329	8,487,537 – 8,487,637	-	6	111	78.97	-1.45	0.63	0.588129
9720	dm3.chr3R	8,494,616 – 8,494,736	- - CDS="CDS;ID=CDS_FBgn0038073:4_175;Name=CG14395-cds;Parent=FBtr0300770;parent_type=mRNA" - - - - -	13330	8,494,616 – 8,494,736	+	13	120	88.09	-1.39	0.77	0.558492
9721	dm3.chr3R	8,495,923 – 8,496,072	- - CDS="CDS;ID=CDS_FBgn0038073:5_175;Name=CG14395-cds;Parent=FBtr0300769,FBtr0300770;parent_type=mRNA" - - - - -	13331	8,495,923 – 8,496,072	+	12	149	77.61	-2.01	0.55	0.928359
9721	dm3.chr3R	8,495,923 – 8,496,072		13332	8,495,923 – 8,496,072	-	12	149	77.61	-2.73	0.55	0.993126
9722	dm3.chr3R	8,511,962 – 8,512,066	- - - intron="intron;ID=intron_FBgn0001296:6_FBgn0001296:5;Name=kar-in;Parent=FBtr0082666,FBtr0302563;parent_type=mRNA" - - - -	13333	8,511,962 – 8,512,066	+	5	104	89.23	-1.92	0.75	0.640033
9723	dm3.chr3R	8,521,923 – 8,522,036	- - CDS="CDS;ID=CDS_FBgn0038079:3_138;Name=CG14394-cds;Parent=FBtr0113226,FBtr0113227,FBtr0113228;parent_type=mRNA" - - - - -	13334	8,521,923 – 8,522,036	-	14	117	77.16	-1.16	0.52	0.535858
9724	dm3.chr3R	8,528,737 – 8,528,795	- - - intron="intron;ID=intron_CG6148:5_CG6148:3;Name=Past1-in;Parent=FBtr0082655;parent_type=mRNA" - - - -	13335	8,528,737 – 8,528,795	+	6	64	65.55	-1.17	0.49	0.837852
9725	dm3.chr3R	8,546,556 – 8,546,650	- - - - - - - -	13336	8,546,556 – 8,546,650	-	7	111	67.00	-1.41	0.38	0.594653
9726	dm3.chr3R	8,552,389 – 8,552,482	- - - - - - - -	13337	8,552,389 – 8,552,482	-	7	93	70.83	-1.26	0.49	0.813589
9727	dm3.chr3R	8,556,339 – 8,556,431	- - - - - - - -	13338	8,556,339 – 8,556,431	+	5	115	80.41	-1.10	0.90	0.833439
9728	dm3.chr3R	8,560,133 – 8,560,195	- - - - - - - -	13339	8,560,133 – 8,560,195	-	8	66	58.42	-1.22	0.30	0.732689
9729	dm3.chr3R	8,562,435 – 8,562,538	- - - - - - - -	13340	8,562,435 – 8,562,538	+	12	120	77.69	-2.60	0.47	0.971688
9730	dm3.chr3R	8,574,158 – 8,574,252	- - - intron="intron;ID=intron_FBgn0038084:4_FBgn0038084:3;Name=beat-Vc-in;Parent=FBtr0082658;parent_type=mRNA" - - - -	13341	8,574,158 – 8,574,252	+	5	94	98.26	-2.96	0.86	0.970776
9730	dm3.chr3R	8,574,158 – 8,574,252		13342	8,574,158 – 8,574,252	-	5	94	98.26	-2.01	0.85	0.638136
9731	dm3.chr3R	8,583,605 – 8,583,656	- - - intron="intron;ID=intron_FBgn0038084:6_FBgn0038084:5;Name=beat-Vc-in;Parent=FBtr0082658;parent_type=mRNA" - - - -	13343	8,583,605 – 8,583,656	-	11	64	78.03	-0.96	0.77	0.643596
9732	dm3.chr3R	8,584,783 – 8,584,893	- - - intron="intron;ID=intron_FBgn0038084:6_FBgn0038084:5;Name=beat-Vc-in;Parent=FBtr0082658;parent_type=mRNA" - - - -	13344	8,584,783 – 8,584,893	+	8	115	74.83	-1.11	0.54	0.650191
9733	dm3.chr3R	8,587,291 – 8,587,435	- - - intron="intron;ID=intron_FBgn0038084:6_FBgn0038084:5;Name=beat-Vc-in;Parent=FBtr0082658;parent_type=mRNA" - - - -	13345	8,587,291 – 8,587,408	+	12	120	98.87	-1.20	0.97	0.651904
9733	dm3.chr3R	8,587,291 – 8,587,435		13346	8,587,322 – 8,587,435	+	12	119	90.33	-1.56	0.89	0.854612
9734	dm3.chr3R	8,598,980 – 8,599,080	- - - intron="intron;ID=intron_FBgn0038084:6_FBgn0038084:5;Name=beat-Vc-in;Parent=FBtr0082658;parent_type=mRNA" - - - -	13347	8,598,980 – 8,599,080	-	8	115	84.63	-1.68	0.77	0.845631
9735	dm3.chr3R	8,604,797 – 8,604,898	- - - - - - - -	13348	8,604,797 – 8,604,898	-	5	107	60.84	-1.53	0.31	0.657659
9736	dm3.chr3R	8,610,368 – 8,610,464	- - - - - - - -	13349	8,610,368 – 8,610,464	+	12	118	71.23	-1.99	0.31	0.517340
9736	dm3.chr3R	8,610,368 – 8,610,464	- - - - - - - -	13350	8,610,368 – 8,610,464	-	12	118	71.23	-2.25	0.27	0.533158
9737	dm3.chr3R	8,612,665 – 8,612,762	- - - - - - - -	13351	8,612,665 – 8,612,762	-	11	109	63.52	-0.81	0.52	0.935171
9738	dm3.chr3R	8,615,687 – 8,615,756	- - - - - - - -	13352	8,615,687 – 8,615,756	-	6	81	58.99	-0.80	0.40	0.575162
9739	dm3.chr3R	8,632,314 – 8,632,429	- - - - - - - -	13353	8,632,314 – 8,632,423	+	11	120	94.22	-1.31	0.89	0.500000
				13354	8,632,314 – 8,632,423	-	11	120	94.22	-1.18	0.97	0.782330
				13355	8,632,336 – 8,632,429	-	10	93	97.39	-1.35	0.99	0.854012
9740	dm3.chr3R	8,641,153 – 8,641,255	- - - intron="intron;ID=intron_FBgn0051345:5_FBgn0051345:4;Name=CG31345-in;Parent=FBtr0082689;parent_type=mRNA" - - - -	13356	8,641,153 – 8,641,255	+	9	123	65.42	-2.13	0.36	0.959040
9741	dm3.chr3R	8,641,780 – 8,641,873	- - - intron="intron;ID=intron_FBgn0051345:5_FBgn0051345:4;Name=CG31345-in;Parent=FBtr0082689;parent_type=mRNA" - - - -	13357	8,641,780 – 8,641,873	+	6	97	81.82	-1.71	0.74	0.887780
9741	dm3.chr3R	8,641,780 – 8,641,873		13358	8,641,780 – 8,641,873	-	6	97	81.82	-2.41	0.56	0.912066
9742	dm3.chr3R	8,646,476 – 8,646,596	- - - - - - - -	13359	8,646,476 – 8,646,594	+	5	119	88.01	-2.11	0.65	0.540076
				13360	8,646,476 – 8,646,594	-	5	119	88.01	-1.83	0.75	0.652527
				13361	8,646,478 – 8,646,596	+	5	119	88.60	-2.16	0.65	0.538432
				13362	8,646,478 – 8,646,596	-	5	119	88.60	-1.75	0.75	0.541968
9743	dm3.chr3R	8,647,406 – 8,647,521	- - - - - - - -	13363	8,647,406 – 8,647,521	-	6	121	65.58	-2.13	0.31	0.892397
9744	dm3.chr3R	8,649,500 – 8,649,617	- - - - - - - -	13364	8,649,500 – 8,649,617	-	5	119	90.66	-1.35	0.88	0.619316
9745	dm3.chr3R	8,653,119 – 8,653,316	- - - - - - - -	13365	8,653,119 – 8,653,211	+	7	109	73.34	-1.38	0.58	0.781414
				13366	8,653,119 – 8,653,211	-	7	109	73.34	-1.14	0.62	0.710544
				13367	8,653,211 – 8,653,316	-	6	105	77.76	-1.56	0.51	0.513823
9746	dm3.chr3R	8,653,452 – 8,653,545	- - - - - - - -	13368	8,653,452 – 8,653,545	-	9	116	71.50	-1.86	0.54	0.951293
9747	dm3.chr3R	8,654,887 – 8,654,963	- - - - - - - -	13369	8,654,887 – 8,654,963	+	10	84	77.11	-1.17	0.56	0.631725
9748	dm3.chr3R	8,660,865 – 8,660,955	- - - - - - - -	13370	8,660,865 – 8,660,955	+	9	100	89.28	-2.03	0.72	0.656674
9749	dm3.chr3R	8,661,620 – 8,661,713	- - - - - - - -	13371	8,661,620 – 8,661,713	+	7	103	69.41	-1.42	0.67	0.989450
9750	dm3.chr3R	8,663,700 – 8,663,853	- - - - - - - -	13372	8,663,700 – 8,663,816	-	12	120	96.37	-3.65	0.88	0.996302
				13373	8,663,736 – 8,663,839	-	12	113	85.54	-1.96	0.75	0.926816
				13374	8,663,750 – 8,663,853	-	12	113	77.70	-2.19	0.56	0.984775
9751	dm3.chr3R	8,672,158 – 8,672,273	- - - intron="intron;ID=intron_FBgn0038087:7_FBgn0038087:6;Name=beat-Va-in;Parent=FBtr0302367,FBtr0082688;parent_type=mRNA" - - - -	13375	8,672,158 – 8,672,273	-	9	116	75.99	-1.39	0.59	0.827580
9752	dm3.chr3R	8,674,119 – 8,674,210	- - - - - - - -	13376	8,674,119 – 8,674,210	+	11	112	67.52	-1.29	0.43	0.767663
9753	dm3.chr3R	8,675,873 – 8,675,961	- - - - - - - -	13377	8,675,873 – 8,675,961	-	7	93	62.56	-2.27	0.39	0.996575
9754	dm3.chr3R	8,685,227 – 8,685,321	- - - - - - - -	13378	8,685,227 – 8,685,321	+	6	106	65.88	-2.12	0.33	0.889537
9755	dm3.chr3R	8,694,778 – 8,694,847	- - - - - - - -	13379	8,694,778 – 8,694,847	+	6	70	75.52	-1.14	0.71	0.868617
9756	dm3.chr3R	8,713,426 – 8,713,529	- - - - - - - -	13380	8,713,426 – 8,713,529	-	9	117	68.05	-1.64	0.34	0.631168
9757	dm3.chr3R	8,718,331 – 8,718,449	- - CDS="CDS;ID=CDS_FBgn0038089:3_221;Name=d-cup-cds;Parent=FBtr0082683;parent_type=mRNA" - - - - -	13381	8,718,331 – 8,718,449	+	12	118	64.01	-3.02	0.02	0.605083
9758	dm3.chr3R	8,724,172 – 8,724,273	- - - - - - - -	13382	8,724,172 – 8,724,273	+	12	119	93.69	-2.07	0.80	0.740891
9759	dm3.chr3R	8,725,889 – 8,725,939	- - - - - - - -	13383	8,725,889 – 8,725,939	-	3	50	96.00	-1.35	0.97	0.792181
9760	dm3.chr3R	8,727,531 – 8,727,630	- - - - - - - -	13384	8,727,531 – 8,727,630	+	12	115	75.33	-2.26	0.55	0.979907
9761	dm3.chr3R	8,729,936 – 8,730,030	- - - - - - - -	13385	8,729,936 – 8,730,030	+	7	95	69.77	-2.13	0.31	0.604696
9761	dm3.chr3R	8,729,936 – 8,730,030	- - - - - - - -	13386	8,729,936 – 8,730,030	-	7	95	69.77	-2.02	0.38	0.827482
9762	dm3.chr3R	8,732,301 – 8,732,392	- - - - - - - -	13387	8,732,301 – 8,732,392	+	12	112	78.11	-1.48	0.56	0.610686
9762	dm3.chr3R	8,732,301 – 8,732,392	- - - - - - - -	13388	8,732,301 – 8,732,392	-	12	112	78.11	-1.35	0.65	0.768624
9763	dm3.chr3R	8,734,138 – 8,734,242	- - - - - - - -	13389	8,734,138 – 8,734,242	+	10	113	69.57	-2.16	0.28	0.538530
9764	dm3.chr3R	8,743,705 – 8,743,810	- - - intron="intron;ID=intron_CG31298:1_CG31298:2;Name=beat-Vb-in;Parent=FBtr0082684;parent_type=mRNA" - - - -	13390	8,743,705 – 8,743,810	-	9	109	79.28	-2.90	0.61	0.997811
9765	dm3.chr3R	8,762,598 – 8,762,695	- - - - - - - -	13391	8,762,598 – 8,762,695	-	11	103	92.51	-1.95	0.81	0.779942
9766	dm3.chr3R	8,762,867 – 8,762,959	- - - - - - - -	13392	8,762,867 – 8,762,959	-	5	102	78.96	-1.64	0.60	0.605270
9767	dm3.chr3R	8,771,275 – 8,771,369	- - - - - - - -	13393	8,771,275 – 8,771,369	+	8	104	79.21	-1.54	0.95	0.977446
9767	dm3.chr3R	8,771,275 – 8,771,369	- - - - - - - -	13394	8,771,275 – 8,771,369	-	8	104	79.21	-1.14	0.94	0.936861
9768	dm3.chr3R	8,780,843 – 8,780,974	- - - intron="intron;ID=intron_FBgn0040493:3_FBgn0040493:2;Name=granny-smith-in;Parent=FBtr0082730,FBtr0290273,FBtr0290274;parent_type=mRNA" - - - -	13395	8,780,843 – 8,780,974	-	12	154	73.81	-1.44	0.50	0.819565
9769	dm3.chr3R	8,781,786 – 8,781,891	- - - intron="intron;ID=intron_FBgn0040493:3_FBgn0040493:2;Name=granny-smith-in;Parent=FBtr0082730,FBtr0290273,FBtr0290274;parent_type=mRNA" - - - -	13396	8,781,786 – 8,781,891	+	5	105	90.50	-1.69	0.84	0.696494
9769	dm3.chr3R	8,781,786 – 8,781,891		13397	8,781,786 – 8,781,891	-	5	105	90.50	-2.05	0.83	0.866373
9770	dm3.chr3R	8,811,985 – 8,812,076	- - CDS="CDS;ID=CDS_FBgn0051342:1_230;Name=CG31342-cds;Parent=FBtr0113404;parent_type=mRNA" - - - - -	13398	8,811,985 – 8,812,076	+	7	91	72.37	-0.95	0.59	0.811720
9770	dm3.chr3R	8,811,985 – 8,812,076		13399	8,811,985 – 8,812,076	-	7	91	72.37	-1.17	0.61	0.926441
9771	dm3.chr3R	8,815,791 – 8,815,903	- - - - - - - -	13400	8,815,791 – 8,815,903	-	11	112	61.53	-0.50	0.39	0.514844
9772	dm3.chr3R	8,832,749 – 8,832,929	- - CDS="CDS;ID=CDS_FBgn0038108:14_264;Name=CG7518-cds;Parent=FBtr0306256;parent_type=mRNA" - - - - -	13401	8,832,749 – 8,832,861	-	12	118	72.23	-1.32	0.41	0.621041
9772	dm3.chr3R	8,832,749 – 8,832,929		13402	8,832,821 – 8,832,929	+	12	115	82.37	-2.20	0.46	0.691070
9773	dm3.chr3R	8,833,396 – 8,833,490	- - - intron="intron;ID=intron_FBgn0038108:16_FBgn0038108:18;Name=CG7518-in;Parent=FBtr0301224;parent_type=mRNA" - - - -	13403	8,833,396 – 8,833,490	+	11	111	57.44	-0.46	0.51	0.922832
9774	dm3.chr3R	8,841,119 – 8,841,228	- - - intron="intron;ID=intron_CG7583:13_CG7583:2;Name=CtBP-in;Parent=FBtr0082700;parent_type=mRNA" - - - -	13404	8,841,119 – 8,841,228	+	5	114	90.07	-2.08	0.83	0.891457
9775	dm3.chr3R	8,841,427 – 8,841,536	- - - intron="intron;ID=intron_CG7583:13_CG7583:2;Name=CtBP-in;Parent=FBtr0082700;parent_type=mRNA" - - - -	13405	8,841,427 – 8,841,536	+	6	113	73.33	-1.70	0.56	0.933507
9776	dm3.chr3R	8,847,040 – 8,847,132	- - - intron="intron;ID=intron_CG7583:5_CG7583:6;Name=CtBP-in;Parent=FBtr0082700,FBtr0082702,FBtr0082701,FBtr0082699;parent_type=mRNA" - - - -	13406	8,847,040 – 8,847,132	+	13	98	67.11	-0.36	0.48	0.570657
9776	dm3.chr3R	8,847,040 – 8,847,132		13407	8,847,040 – 8,847,132	-	13	98	67.11	-1.02	0.42	0.843990
9777	dm3.chr3R	8,885,128 – 8,885,264	- - - intron="intron;ID=intron_CG7771:1_CG7771:3;Name=sim-in;Parent=FBtr0082711;parent_type=mRNA" - - - -	13408	8,885,128 – 8,885,264	+	7	149	75.54	-2.21	0.52	0.957554
9777	dm3.chr3R	8,885,128 – 8,885,264		13409	8,885,128 – 8,885,264	-	7	149	75.54	-2.29	0.61	0.989160
9778	dm3.chr3R	8,895,101 – 8,895,237	- - - intron="intron;ID=intron_CG7771:1_CG7771:3;Name=sim-in;Parent=FBtr0082711;parent_type=mRNA" - - - -	13410	8,895,101 – 8,895,203	+	5	108	86.11	-1.94	0.76	0.810577
				13411	8,895,101 – 8,895,203	-	5	108	86.11	-1.67	0.76	0.617230
				13412	8,895,139 – 8,895,237	+	3	98	91.70	-2.47	0.88	0.966838
				13413	8,895,139 – 8,895,237	-	3	98	91.70	-2.00	0.81	0.686667
9779	dm3.chr3R	8,922,894 – 8,923,015	- - - intron="intron;ID=intron_CG7855:5_CG7855:6;Name=timeout-in;Parent=FBtr0082712;parent_type=mRNA" - - - -	13414	8,922,894 – 8,923,010	-	12	120	94.61	-1.97	0.91	0.926547
				13415	8,922,903 – 8,923,015	+	12	119	94.78	-1.72	0.92	0.874939
				13416	8,922,903 – 8,923,015	-	12	119	94.78	-2.21	0.81	0.822891
9780	dm3.chr3R	8,924,881 – 8,924,938	- - - intron="intron;ID=intron_CG7855:6_CG7855:7;Name=timeout-in;Parent=FBtr0082712;parent_type=mRNA" - - - -	13417	8,924,881 – 8,924,938	+	6	60	78.62	-1.95	0.62	0.918563
9780	dm3.chr3R	8,924,881 – 8,924,938		13418	8,924,881 – 8,924,938	-	6	60	78.62	-2.53	0.74	0.994901
9781	dm3.chr3R	8,930,359 – 8,930,477	- - - intron="intron;ID=intron_CG7855:7_CG7855:8;Name=timeout-in;Parent=FBtr0082712;parent_type=mRNA" - - - -	13419	8,930,359 – 8,930,477	+	6	118	75.31	-2.00	0.55	0.958221
9782	dm3.chr3R	8,956,886 – 8,956,939	- - - intron="intron;ID=intron_FBgn0260793:2_FBgn0260793:1;Name=2mit-in;Parent=FBtr0301436;parent_type=mRNA" - - - -	13420	8,956,886 – 8,956,939	+	6	66	62.54	-0.82	0.63	0.972915
9782	dm3.chr3R	8,956,886 – 8,956,939		13421	8,956,886 – 8,956,939	-	6	66	62.54	-1.76	0.47	0.991807
9783	dm3.chr3R	8,958,364 – 8,958,460	- - - - - - - -	13422	8,958,364 – 8,958,460	+	3	96	90.43	-1.62	0.85	0.608075
9784	dm3.chr3R	8,958,969 – 8,959,065	- - - intron="intron;ID=intron_FBgn0260793:3_FBgn0260793:2;Name=2mit-in;Parent=FBtr0301436;parent_type=mRNA" - - - -	13423	8,958,969 – 8,959,065	+	12	120	79.45	-1.46	0.62	0.672541
9785	dm3.chr3R	8,961,425 – 8,961,531	- - - intron="intron;ID=intron_FBgn0260793:3_FBgn0260793:2;Name=2mit-in;Parent=FBtr0301436;parent_type=mRNA" - - - -	13424	8,961,425 – 8,961,531	-	8	112	74.30	-1.42	0.47	0.541927
9786	dm3.chr3R	8,975,918 – 8,976,022	- - - intron="intron;ID=intron_FBgn0260793:3_FBgn0260793:2;Name=2mit-in;Parent=FBtr0301436;parent_type=mRNA" - - - -	13425	8,975,918 – 8,976,022	+	11	108	76.76	-1.96	0.54	0.953207
9787	dm3.chr3R	8,989,405 – 8,989,518	- - CDS="CDS;ID=CDS_CG7855:18_47;Name=timeout-cds;Parent=FBtr0082712;parent_type=mRNA" - - - - -	13426	8,989,405 – 8,989,513	+	10	117	81.74	-1.96	0.53	0.617713
				13427	8,989,405 – 8,989,513	-	10	117	81.74	-3.07	0.75	0.997915
				13428	8,989,410 – 8,989,518	+	10	117	81.69	-2.28	0.52	0.830451
				13429	8,989,410 – 8,989,518	-	10	117	81.69	-2.86	0.80	0.997308
9788	dm3.chr3R	9,016,067 – 9,016,160	- - - - - - - -	13430	9,016,067 – 9,016,160	+	10	114	48.70	-1.99	0.15	0.790252
9789	dm3.chr3R	9,020,641 – 9,020,772	- - - - - - - -	13431	9,020,641 – 9,020,743	-	9	117	82.22	-2.08	0.60	0.818797
9789	dm3.chr3R	9,020,641 – 9,020,772	- - - - - - - -	13432	9,020,680 – 9,020,772	-	6	112	80.24	-1.27	0.77	0.683245
9790	dm3.chr3R	9,022,170 – 9,022,281	- - - - - - - -	13433	9,022,170 – 9,022,281	+	5	111	90.90	-2.14	0.90	0.960749
9790	dm3.chr3R	9,022,170 – 9,022,281	- - - - - - - -	13434	9,022,170 – 9,022,281	-	5	111	90.90	-3.24	0.82	0.993316
9791	dm3.chr3R	9,023,104 – 9,023,198	- - - - - - - -	13435	9,023,104 – 9,023,198	+	8	95	74.52	-1.76	0.43	0.733966
9792	dm3.chr3R	9,035,947 – 9,036,060	- - CDS="CDS;ID=CDS_CG8483:3_38;Name=CG8483-cds;Parent=FBtr0082782;parent_type=mRNA" - - - - -	13436	9,035,947 – 9,036,055	-	13	110	78.31	-1.30	0.54	0.616482
9792	dm3.chr3R	9,035,947 – 9,036,060		13437	9,035,959 – 9,036,060	-	13	113	73.75	-1.05	0.55	0.765127
9793	dm3.chr3R	9,041,238 – 9,041,340	- - - - - - - -	13438	9,041,238 – 9,041,338	-	5	119	87.77	-1.92	0.76	0.681839
9793	dm3.chr3R	9,041,238 – 9,041,340	- - - - - - - -	13439	9,041,240 – 9,041,340	-	5	119	87.41	-1.89	0.76	0.677600
9794	dm3.chr3R	9,044,900 – 9,044,992	- - - - - - - -	13440	9,044,900 – 9,044,992	-	5	97	91.06	-2.86	0.78	0.971031
9795	dm3.chr3R	9,047,744 – 9,047,842	- - - - - - - -	13441	9,047,744 – 9,047,842	-	8	121	64.15	-1.39	0.37	0.604845
9796	dm3.chr3R	9,052,557 – 9,052,649	- - - - - - - -	13442	9,052,557 – 9,052,649	-	12	120	84.73	-1.99	0.64	0.659025
9797	dm3.chr3R	9,065,361 – 9,065,459	- - - intron="intron;ID=intron_FBgn0000024:6_FBgn0000024:5;Name=Ace-in;Parent=FBtr0082780,FBtr0300486;parent_type=mRNA" - - - -	13443	9,065,361 – 9,065,459	+	5	98	98.06	-1.16	0.99	0.745299
9798	dm3.chr3R	9,067,853 – 9,067,923	- - - intron="intron;ID=intron_FBgn0000024:6_FBgn0000024:5;Name=Ace-in;Parent=FBtr0082780,FBtr0300486;parent_type=mRNA" - - - -	13444	9,067,853 – 9,067,923	-	7	90	68.75	-1.74	0.46	0.834220
9799	dm3.chr3R	9,088,334 – 9,088,425	- - - - - - - -	13445	9,088,334 – 9,088,425	+	3	108	63.84	-2.09	0.35	0.530618
9800	dm3.chr3R	9,107,906 – 9,107,998	- - - intron="intron;ID=intron_CG8630:1_CG8630:2;Name=CG8630-in;Parent=FBtr0082737;parent_type=mRNA" - - - -	13446	9,107,906 – 9,107,998	+	5	92	96.20	-0.96	1.00	0.712900
9800	dm3.chr3R	9,107,906 – 9,107,998		13447	9,107,906 – 9,107,998	-	5	92	96.20	-1.99	0.91	0.893095
9801	dm3.chr3R	9,108,123 – 9,108,227	- - CDS="CDS;ID=CDS_CG8630:2_46;Name=CG8630-cds;Parent=FBtr0082737;parent_type=mRNA" - - - - -	13448	9,108,123 – 9,108,227	-	11	110	76.60	-2.38	0.59	0.996310
9802	dm3.chr3R	9,114,580 – 9,114,673	- - - - - - - -	13449	9,114,580 – 9,114,673	+	10	113	77.21	-1.70	0.50	0.585227
9803	dm3.chr3R	9,144,209 – 9,144,302	- - - - - - - -	13450	9,144,209 – 9,144,302	-	3	105	51.46	-1.91	0.26	0.606708
9804	dm3.chr3R	9,154,829 – 9,154,943	- - - - - - - -	13451	9,154,829 – 9,154,943	-	7	126	68.71	-1.61	0.35	0.533227
9805	dm3.chr3R	9,199,194 – 9,199,320	- - - - - - - -	13452	9,199,194 – 9,199,298	-	8	105	71.02	-0.87	0.52	0.545457
9805	dm3.chr3R	9,199,194 – 9,199,320	- - - - - - - -	13453	9,199,230 – 9,199,320	+	6	97	85.46	-2.10	0.87	0.971931
9806	dm3.chr3R	9,201,861 – 9,201,961	- - - intron="intron;ID=intron_CG9813:5_CG9813:6;Name=CG9813-in;Parent=FBtr0082769,FBtr0082770,FBtr0082765,FBtr0082766,FBtr0082767,FBtr0082768;parent_type=mRNA" - - - -	13454	9,201,861 – 9,201,961	+	4	105	63.92	-1.55	0.41	0.526687
9806	dm3.chr3R	9,201,861 – 9,201,961		13455	9,201,861 – 9,201,961	-	4	105	63.92	-2.00	0.45	0.933161
9807	dm3.chr3R	9,236,244 – 9,236,352	- - - intron="intron;ID=intron_CG9792:2_CG9792:3;Name=yellow-e-in;Parent=FBtr0082757;parent_type=mRNA" - - - -	13456	9,236,244 – 9,236,352	-	6	118	66.73	-1.19	0.41	0.563127
9808	dm3.chr3R	9,241,347 – 9,241,493	- - - - - - - -	13457	9,241,347 – 9,241,453	-	8	119	66.26	-2.62	0.32	0.981240
9808	dm3.chr3R	9,241,347 – 9,241,493	- - - - - - - -	13458	9,241,386 – 9,241,493	-	8	120	74.89	-2.68	0.39	0.933383
9809	dm3.chr3R	9,257,886 – 9,257,996	- - CDS="CDS;ID=CDS_FBgn0004049:8_38;Name=yrt-cds;Parent=FBtr0082793;parent_type=mRNA" - - - - -	13459	9,257,886 – 9,257,990	-	12	110	64.65	-1.45	0.34	0.830062
9809	dm3.chr3R	9,257,886 – 9,257,996		13460	9,257,892 – 9,257,996	-	12	108	65.35	-1.69	0.36	0.945020
9810	dm3.chr3R	9,259,942 – 9,260,046	- - - - - - - -	13461	9,259,942 – 9,260,046	+	11	114	64.59	-0.76	0.42	0.672142
9811	dm3.chr3R	9,266,419 – 9,266,532	- - - - - - - -	13462	9,266,419 – 9,266,532	+	8	115	75.68	-1.98	0.50	0.893427
9812	dm3.chr3R	9,268,906 – 9,269,005	- - - - - - - -	13463	9,268,906 – 9,269,005	+	5	100	93.18	-1.62	0.92	0.837234
9812	dm3.chr3R	9,268,906 – 9,269,005	- - - - - - - -	13464	9,268,906 – 9,269,005	-	5	100	93.18	-2.48	0.88	0.968772
9813	dm3.chr3R	9,269,543 – 9,269,647	- - - - - - - -	13465	9,269,543 – 9,269,647	-	11	116	86.03	-1.96	0.77	0.906088
9814	dm3.chr3R	9,289,530 – 9,289,665	- - - - - - - -	13466	9,289,530 – 9,289,628	+	6	118	67.90	-0.74	0.68	0.826114
				13467	9,289,530 – 9,289,628	-	6	118	67.90	-0.79	0.65	0.807531
				13468	9,289,568 – 9,289,665	-	4	97	95.19	-1.62	0.91	0.745378
9815	dm3.chr3R	9,289,944 – 9,290,026	FBnoncoding="pre_miRNA;ID=FBtr0304493;Name=mir-252-RM;Parent=FBgn0262323;Alias=CR43030-RM;Dbxref=FlyBase_Annotation_IDs:CR43030-RM,miRBase:MI0005858" - - - - - - "mirBase_v16=dsi-mir-252\|7.4e-42"	13469	9,289,944 – 9,290,026	+	14	90	88.48	-3.45	0.82	0.998155
9815	dm3.chr3R	9,289,944 – 9,290,026		13470	9,289,944 – 9,290,026	-	14	90	88.48	-4.51	0.90	0.999264
9816	dm3.chr3R	9,292,580 – 9,292,638	- - - - - - - -	13471	9,292,580 – 9,292,638	+	5	61	68.80	-1.50	0.48	0.725724
9817	dm3.chr3R	9,295,873 – 9,295,970	- - - - - - - -	13472	9,295,873 – 9,295,970	+	5	102	81.72	-2.09	0.66	0.863508
9817	dm3.chr3R	9,295,873 – 9,295,970	- - - - - - - -	13473	9,295,873 – 9,295,970	-	5	102	81.72	-2.53	0.64	0.956602
9818	dm3.chr3R	9,298,929 – 9,298,985	- - - - - - - -	13474	9,298,929 – 9,298,985	+	5	60	88.23	-0.98	0.92	0.566380
9819	dm3.chr3R	9,302,707 – 9,302,827	- - - - - - - -	13475	9,302,707 – 9,302,802	+	11	114	79.12	-1.08	0.67	0.550492
				13476	9,302,707 – 9,302,802	-	11	114	79.12	-1.22	0.64	0.586542
				13477	9,302,722 – 9,302,827	+	12	116	89.54	-2.16	0.78	0.889378
9820	dm3.chr3R	9,304,589 – 9,304,695	- - - - - - - -	13478	9,304,589 – 9,304,695	+	11	106	79.93	-1.43	0.60	0.570486
9821	dm3.chr3R	9,311,392 – 9,311,494	- - - - - - - -	13479	9,311,392 – 9,311,494	+	8	110	74.14	-1.89	0.44	0.815202
9821	dm3.chr3R	9,311,392 – 9,311,494	- - - - - - - -	13480	9,311,392 – 9,311,494	-	8	110	74.14	-1.22	0.69	0.922873
9822	dm3.chr3R	9,318,215 – 9,318,336	- - - - - - - -	13481	9,318,215 – 9,318,305	+	12	115	84.68	-1.54	0.72	0.578739
9822	dm3.chr3R	9,318,215 – 9,318,336	- - - - - - - -	13482	9,318,231 – 9,318,336	+	12	117	87.50	-1.79	0.67	0.517866
9823	dm3.chr3R	9,319,634 – 9,319,795	- - - - - - - -	13483	9,319,634 – 9,319,742	-	6	111	74.88	-0.98	0.80	0.808702
9823	dm3.chr3R	9,319,634 – 9,319,795	- - - - - - - -	13484	9,319,702 – 9,319,795	+	10	105	70.21	-0.92	0.48	0.625020
9824	dm3.chr3R	9,321,114 – 9,321,212	- - - - - - - -	13485	9,321,114 – 9,321,212	+	6	111	80.14	-2.41	0.66	0.976400
9824	dm3.chr3R	9,321,114 – 9,321,212	- - - - - - - -	13486	9,321,114 – 9,321,212	-	6	111	80.14	-3.09	0.66	0.996627
9825	dm3.chr3R	9,325,679 – 9,325,777	- - - - - - - -	13487	9,325,679 – 9,325,777	+	3	107	65.16	-2.85	0.60	0.997917
9826	dm3.chr3R	9,327,072 – 9,327,132	- - - - - - - -	13488	9,327,072 – 9,327,132	-	4	71	74.88	-2.29	0.46	0.808050
9827	dm3.chr3R	9,329,435 – 9,329,553	- - - - - - - -	13489	9,329,435 – 9,329,553	+	6	118	77.13	-2.17	0.62	0.967676
9827	dm3.chr3R	9,329,435 – 9,329,553	- - - - - - - -	13490	9,329,435 – 9,329,553	-	6	118	77.13	-2.57	0.51	0.966701
9828	dm3.chr3R	9,331,471 – 9,331,590	- - - - - - - -	13491	9,331,471 – 9,331,590	+	11	120	80.58	-0.79	0.73	0.518279
9829	dm3.chr3R	9,332,329 – 9,332,432	- - - - - - - -	13492	9,332,329 – 9,332,432	+	5	111	85.74	-1.71	0.74	0.556918
9829	dm3.chr3R	9,332,329 – 9,332,432	- - - - - - - -	13493	9,332,329 – 9,332,432	-	5	111	85.74	-1.96	0.67	0.524862
9830	dm3.chr3R	9,339,477 – 9,339,527	- - - - - - - -	13494	9,339,477 – 9,339,527	-	11	51	86.38	-2.59	0.52	0.812959
9831	dm3.chr3R	9,344,193 – 9,344,296	- - - - - - - -	13495	9,344,193 – 9,344,296	-	3	105	51.91	-2.39	0.27	0.936805
9832	dm3.chr3R	9,346,999 – 9,347,119	- - - - - - - -	13496	9,346,999 – 9,347,094	-	11	113	86.82	-1.23	0.86	0.654609
9832	dm3.chr3R	9,346,999 – 9,347,119	- - - - - - - -	13497	9,347,018 – 9,347,119	-	5	102	88.75	-1.81	0.76	0.582604
9833	dm3.chr3R	9,350,221 – 9,350,272	- - - - - - - -	13498	9,350,221 – 9,350,272	-	5	62	74.60	-1.42	0.62	0.658054
9834	dm3.chr3R	9,351,631 – 9,351,725	- - - - - - - -	13499	9,351,631 – 9,351,725	+	12	109	69.13	-2.18	0.34	0.939997
9834	dm3.chr3R	9,351,631 – 9,351,725	- - - - - - - -	13500	9,351,631 – 9,351,725	-	12	109	69.13	-1.35	0.36	0.500000
9835	dm3.chr3R	9,356,183 – 9,356,289	- - - - - - - -	13501	9,356,183 – 9,356,289	+	7	107	78.46	-1.26	0.60	0.577779
9835	dm3.chr3R	9,356,183 – 9,356,289	- - - - - - - -	13502	9,356,183 – 9,356,289	-	7	107	78.46	-2.25	0.70	0.991840
9836	dm3.chr3R	9,356,566 – 9,356,693	- - - - - - - -	13503	9,356,566 – 9,356,693	-	6	128	74.93	-1.49	0.54	0.659010
9837	dm3.chr3R	9,357,967 – 9,358,075	- - - - - - - -	13504	9,357,967 – 9,358,070	+	12	118	82.76	-1.99	0.54	0.730548
9837	dm3.chr3R	9,357,967 – 9,358,075	- - - - - - - -	13505	9,357,973 – 9,358,075	+	12	116	85.24	-2.12	0.54	0.596506
9838	dm3.chr3R	9,359,952 – 9,360,042	- - - - - - - -	13506	9,359,952 – 9,360,042	+	6	90	86.36	-1.47	0.76	0.513569
9839	dm3.chr3R	9,362,838 – 9,362,933	- - - - - - - -	13507	9,362,838 – 9,362,933	-	9	115	71.67	-2.63	0.37	0.972892
9840	dm3.chr3R	9,364,883 – 9,364,988	- - - - - - - -	13508	9,364,883 – 9,364,977	+	10	116	88.88	-1.95	0.91	0.961974
				13509	9,364,883 – 9,364,977	-	10	116	88.88	-2.10	0.93	0.980112
				13510	9,364,897 – 9,364,988	+	11	120	88.08	-1.97	0.73	0.677034
				13511	9,364,897 – 9,364,988	-	11	120	88.08	-2.27	0.91	0.983445
9841	dm3.chr3R	9,368,465 – 9,368,565	- - - - - - - -	13512	9,368,465 – 9,368,565	-	3	100	100.00	-0.84	1.00	0.509612
9842	dm3.chr3R	9,373,365 – 9,373,418	- - - - - - - -	13513	9,373,365 – 9,373,418	-	5	53	88.66	-1.20	1.00	0.918114
9843	dm3.chr3R	9,374,209 – 9,374,327	- - - - - - - -	13514	9,374,209 – 9,374,327	-	12	129	73.31	-2.39	0.35	0.929719
9844	dm3.chr3R	9,378,472 – 9,378,597	- - - - - - - -	13515	9,378,472 – 9,378,570	+	11	116	81.29	-2.79	0.79	0.996915
				13516	9,378,472 – 9,378,570	-	11	116	81.29	-0.85	0.84	0.621460
				13517	9,378,488 – 9,378,597	+	12	118	91.81	-2.08	0.91	0.961775
9845	dm3.chr3R	9,379,277 – 9,379,391	- - - - - - - -	13518	9,379,277 – 9,379,391	+	8	114	86.98	-2.45	0.66	0.923486
9845	dm3.chr3R	9,379,277 – 9,379,391	- - - - - - - -	13519	9,379,277 – 9,379,391	-	8	114	86.98	-1.99	0.70	0.799353
9846	dm3.chr3R	9,389,482 – 9,389,579	- - - - - - - -	13520	9,389,482 – 9,389,579	-	8	104	83.35	-1.90	0.61	0.685329
9847	dm3.chr3R	9,395,152 – 9,395,266	- - - - - - - -	13521	9,395,152 – 9,395,266	+	12	120	94.42	-2.28	0.81	0.858267
9847	dm3.chr3R	9,395,152 – 9,395,266	- - - - - - - -	13522	9,395,152 – 9,395,266	-	12	120	94.42	-1.88	0.84	0.730451
9848	dm3.chr3R	9,398,838 – 9,398,909	- - - - - - - -	13523	9,398,838 – 9,398,909	-	11	73	68.90	-1.37	0.42	0.723512
9849	dm3.chr3R	9,399,967 – 9,400,085	- - - - - - - -	13524	9,399,967 – 9,400,085	+	12	119	78.54	-2.30	0.54	0.977468
9850	dm3.chr3R	9,406,359 – 9,406,442	- - - - - - - -	13525	9,406,359 – 9,406,442	-	6	83	73.57	-1.00	0.60	0.719716
9851	dm3.chr3R	9,411,355 – 9,411,467	- - - - - - - -	13526	9,411,355 – 9,411,467	+	12	120	88.10	-2.18	0.58	0.515490
9852	dm3.chr3R	9,415,362 – 9,415,455	- - - - - - - -	13527	9,415,362 – 9,415,455	+	7	95	73.47	-1.12	0.55	0.716592
9852	dm3.chr3R	9,415,362 – 9,415,455	- - - - - - - -	13528	9,415,362 – 9,415,455	-	7	95	73.47	-0.74	0.60	0.543847
9853	dm3.chr3R	9,419,610 – 9,419,799	- - - - - - - -	13529	9,419,610 – 9,419,720	+	4	110	80.44	-1.87	0.62	0.580465
9853	dm3.chr3R	9,419,610 – 9,419,799	- - - - - - - -	13530	9,419,683 – 9,419,799	-	9	124	78.39	-1.13	0.64	0.554840
9854	dm3.chr3R	9,421,175 – 9,421,268	- - - - - - - -	13531	9,421,175 – 9,421,268	-	7	94	69.82	-0.53	0.64	0.560259
9855	dm3.chr3R	9,424,576 – 9,424,681	- - - - - - - -	13532	9,424,576 – 9,424,681	+	6	107	74.51	-1.85	0.40	0.578576
9855	dm3.chr3R	9,424,576 – 9,424,681	- - - - - - - -	13533	9,424,576 – 9,424,681	-	6	107	74.51	-1.47	0.48	0.585410
9856	dm3.chr3R	9,425,150 – 9,425,220	- - - - - - - -	13534	9,425,150 – 9,425,220	+	4	73	73.82	-1.26	0.62	0.547153
9857	dm3.chr3R	9,427,041 – 9,427,123	- - - - - - - -	13535	9,427,041 – 9,427,123	-	6	85	71.61	-1.65	0.44	0.720785
9858	dm3.chr3R	9,438,045 – 9,438,120	- - CDS="CDS;ID=CDS_FBgn0003060:1_130;Name=CG9757-cds;Parent=FBtr0082860;parent_type=mRNA" - - - - -	13536	9,438,045 – 9,438,120	-	9	81	74.17	-1.14	0.57	0.754738
9859	dm3.chr3R	9,443,266 – 9,443,386	- - - - - - - -	13537	9,443,266 – 9,443,386	-	5	120	97.67	-2.09	0.96	0.957370
9860	dm3.chr3R	9,447,743 – 9,447,835	- - - - - - - -	13538	9,447,743 – 9,447,835	+	5	92	91.69	-1.59	0.94	0.893550
9860	dm3.chr3R	9,447,743 – 9,447,835	- - - - - - - -	13539	9,447,743 – 9,447,835	-	5	92	91.69	-1.98	0.81	0.745245
9861	dm3.chr3R	9,454,172 – 9,454,289	- - - - - - - -	13540	9,454,172 – 9,454,289	-	12	126	79.53	-1.58	0.53	0.657223
9862	dm3.chr3R	9,470,093 – 9,470,187	- - - - - - - -	13541	9,470,093 – 9,470,187	+	5	94	94.03	-1.02	0.95	0.542555
9863	dm3.chr3R	9,481,004 – 9,481,149	- - CDS="CDS;ID=CDS_CG9654:4_16;Name=Rbp4-cds;Parent=FBtr0082853;parent_type=mRNA" - - - - -	13542	9,481,004 – 9,481,113	+	12	118	69.21	-0.87	0.54	0.843113
				13543	9,481,044 – 9,481,147	+	12	118	63.13	-0.72	0.41	0.588218
				13544	9,481,046 – 9,481,149	+	12	118	62.27	-0.79	0.41	0.704720
9864	dm3.chr3R	9,496,123 – 9,496,214	- - - intron="intron;ID=intron_FBgn0038165:4_FBgn0038165:3;Name=Task6-in;Parent=FBtr0301654;parent_type=mRNA" - - - -	13545	9,496,123 – 9,496,214	-	3	93	80.61	-1.67	0.71	0.500000
9865	dm3.chr3R	9,499,097 – 9,499,177	- - - - - - - -	13546	9,499,097 – 9,499,177	+	9	88	76.11	-2.92	0.34	0.943577
9865	dm3.chr3R	9,499,097 – 9,499,177	- - - - - - - -	13547	9,499,097 – 9,499,177	-	9	88	76.11	-3.21	0.30	0.952559
9866	dm3.chr3R	9,500,295 – 9,500,414	- - - - - - - -	13548	9,500,295 – 9,500,414	+	5	120	93.72	-1.90	0.84	0.723662
9867	dm3.chr3R	9,502,593 – 9,502,740	- - - intron="intron;ID=intron_FBgn0038167:1_FBgn0038167:3;Name=lkb1-in;Parent=FBtr0082814,FBtr0082810;parent_type=mRNA" - - - -	13549	9,502,593 – 9,502,740	-	7	162	66.58	-1.58	0.40	0.882071
9868	dm3.chr3R	9,508,892 – 9,509,004	- - - - - - - -	13550	9,508,892 – 9,509,004	+	5	112	88.48	-2.33	0.69	0.802654
9868	dm3.chr3R	9,508,892 – 9,509,004	- - - - - - - -	13551	9,508,892 – 9,509,004	-	5	112	88.48	-3.18	0.79	0.993699
9869	dm3.chr3R	9,509,643 – 9,509,739	- - - intron="intron;ID=intron_CG9591:1_CG9591:2;Name=omd-in;Parent=FBtr0082848;parent_type=mRNA" - - - -	13552	9,509,643 – 9,509,739	-	7	103	83.62	-2.50	0.63	0.954190
9870	dm3.chr3R	9,510,918 – 9,510,982	- - - intron="intron;ID=intron_FBgn0024555:1_FBgn0024555:2;Name=flfl-in;Parent=FBtr0082817,FBtr0114604;parent_type=mRNA" - - - -	13553	9,510,918 – 9,510,982	-	9	65	90.54	-1.03	0.90	0.500000
9871	dm3.chr3R	9,515,748 – 9,515,846	- - CDS="CDS;ID=CDS_FBgn0024555:7_102;Name=flfl-cds;Parent=FBtr0082817,FBtr0114604;parent_type=mRNA" - - - - -	13554	9,515,748 – 9,515,846	+	14	98	82.43	-1.44	0.64	0.694225
9872	dm3.chr3R	9,539,576 – 9,539,764	- - - intron="intron;ID=intron_FBgn0054044:3_FBgn0054044:2;Name=CG34044-in;Parent=FBtr0100099;parent_type=mRNA" - - - -	13555	9,539,576 – 9,539,698	-	6	124	86.20	-1.70	0.72	0.606452
				13556	9,539,698 – 9,539,764	+	3	67	75.68	-1.08	0.86	0.697651
				13557	9,539,698 – 9,539,764	-	3	67	75.68	-1.69	0.81	0.906996
9873	dm3.chr3R	9,548,272 – 9,548,374	- - - intron="intron;ID=intron_FBgn0085412:2_FBgn0085412:3;Name=CG34383-in;Parent=FBtr0112621,FBtr0112622,FBtr0112623,FBtr0112624;parent_type=mRNA" - - - -	13558	9,548,272 – 9,548,374	-	12	118	70.22	-1.24	0.52	0.873385
9874	dm3.chr3R	9,551,617 – 9,551,684	- - - intron="intron;ID=intron_FBgn0085412:2_FBgn0085412:3;Name=CG34383-in;Parent=FBtr0112621,FBtr0112622,FBtr0112623,FBtr0112624;parent_type=mRNA" - - - -	13559	9,551,617 – 9,551,684	+	8	70	69.96	-2.38	0.34	0.928072
9875	dm3.chr3R	9,557,471 – 9,557,618	- - - intron="intron;ID=intron_FBgn0085412:2_FBgn0085412:3;Name=CG34383-in;Parent=FBtr0112621,FBtr0112622,FBtr0112623,FBtr0112624;parent_type=mRNA" - - - -	13560	9,557,471 – 9,557,588	+	6	119	73.67	-2.24	0.42	0.909275
9875	dm3.chr3R	9,557,471 – 9,557,618		13561	9,557,503 – 9,557,618	+	5	119	90.96	-2.05	0.87	0.922719
9876	dm3.chr3R	9,558,712 – 9,558,812	- - - intron="intron;ID=intron_FBgn0085412:2_FBgn0085412:3;Name=CG34383-in;Parent=FBtr0112621,FBtr0112622,FBtr0112623,FBtr0112624;parent_type=mRNA" - - - -	13562	9,558,712 – 9,558,812	+	9	115	69.24	-1.25	0.59	0.929260
9877	dm3.chr3R	9,566,853 – 9,566,955	- - - intron="intron;ID=intron_FBgn0085412:3_FBgn0085412:4;Name=CG34383-in;Parent=FBtr0112621,FBtr0112622,FBtr0112623,FBtr0112624;parent_type=mRNA" - - - -	13563	9,566,853 – 9,566,955	-	5	109	83.73	-1.69	0.70	0.589195
9878	dm3.chr3R	9,593,232 – 9,593,374	- - - - - - - -	13564	9,593,232 – 9,593,339	+	10	117	69.20	-1.20	0.46	0.775590
9878	dm3.chr3R	9,593,232 – 9,593,374	- - - - - - - -	13565	9,593,265 – 9,593,374	+	9	115	65.95	-0.78	0.51	0.810972
9879	dm3.chr3R	9,597,285 – 9,597,380	- - - - - - - -	13566	9,597,285 – 9,597,380	+	12	120	86.77	-0.57	0.98	0.618908
9879	dm3.chr3R	9,597,285 – 9,597,380	- - - - - - - -	13567	9,597,285 – 9,597,380	-	12	120	86.77	-1.81	0.81	0.897952
9880	dm3.chr3R	9,597,513 – 9,597,642	- - - intron="intron;ID=intron_CG9297:1_CG9297:2;Name=CG9297-in;Parent=FBtr0082828,FBtr0082827;parent_type=mRNA" - - - -	13568	9,597,513 – 9,597,619	+	12	115	84.78	-5.06	0.79	0.999599
				13569	9,597,513 – 9,597,619	-	12	115	84.78	-3.29	0.79	0.998162
				13570	9,597,551 – 9,597,642	+	10	100	81.48	-1.94	0.85	0.984005
				13571	9,597,551 – 9,597,642	-	10	100	81.48	-2.42	0.86	0.995147
9881	dm3.chr3R	9,597,963 – 9,598,060	- - - - - - - -	13572	9,597,963 – 9,598,060	-	12	120	82.94	-2.40	0.44	0.518556
9882	dm3.chr3R	9,598,068 – 9,598,139	- - CDS="CDS;ID=CDS_CG9297:2_48;Name=CG9297-cds;Parent=FBtr0082828,FBtr0082827;parent_type=mRNA" - - - - -	13573	9,598,068 – 9,598,139	+	13	76	85.49	-1.90	0.85	0.971796
9883	dm3.chr3R	9,607,981 – 9,608,085	- - - - - - - -	13574	9,607,981 – 9,608,085	+	7	108	67.63	-0.66	0.48	0.524378
9884	dm3.chr3R	9,615,291 – 9,615,395	- - - - - - - -	13575	9,615,291 – 9,615,395	+	8	119	76.08	-2.17	0.41	0.654252
9885	dm3.chr3R	9,616,420 – 9,616,498	- - - - - - - -	13576	9,616,420 – 9,616,498	+	11	82	90.53	-2.41	0.64	0.719575
9885	dm3.chr3R	9,616,420 – 9,616,498	- - - - - - - -	13577	9,616,420 – 9,616,498	-	11	82	90.53	-2.25	0.71	0.797928
9886	dm3.chr3R	9,624,578 – 9,624,674	- - - - - - - -	13578	9,624,578 – 9,624,674	+	8	96	81.09	-1.34	0.66	0.510035
9887	dm3.chr3R	9,633,154 – 9,633,308	- - - - - - - -	13579	9,633,154 – 9,633,206	-	7	55	71.90	-1.90	0.60	0.980699
9887	dm3.chr3R	9,633,154 – 9,633,308	- - - - - - - -	13580	9,633,206 – 9,633,308	+	11	115	75.31	-1.14	0.59	0.776556
9888	dm3.chr3R	9,644,699 – 9,644,846	- - - - - - - -	13581	9,644,699 – 9,644,807	-	12	119	78.23	-2.28	0.49	0.939142
9888	dm3.chr3R	9,644,699 – 9,644,846	- - - - - - - -	13582	9,644,740 – 9,644,846	-	12	118	81.75	-1.92	0.49	0.575256
9889	dm3.chr3R	9,656,039 – 9,656,135	- - - - - - - -	13583	9,656,039 – 9,656,135	+	11	112	67.23	-0.97	0.47	0.699720
9890	dm3.chr3R	9,656,720 – 9,656,876	- - - - - - - -	13584	9,656,720 – 9,656,820	+	12	121	81.22	-1.78	0.57	0.620844
				13585	9,656,720 – 9,656,820	-	12	121	81.22	-2.34	0.53	0.885549
				13586	9,656,756 – 9,656,860	+	7	105	81.63	-2.67	0.69	0.991256
				13587	9,656,756 – 9,656,860	-	7	105	81.63	-2.23	0.70	0.970078
				13588	9,656,764 – 9,656,876	+	8	119	68.73	-2.11	0.53	0.995911
				13589	9,656,764 – 9,656,876	-	8	119	68.73	-1.60	0.46	0.932728
9891	dm3.chr3R	9,668,679 – 9,668,821	- - - - - - - -	13590	9,668,679 – 9,668,821	+	5	173	74.47	-1.87	0.52	0.724973
9892	dm3.chr3R	9,670,846 – 9,670,960	- - - - - - - -	13591	9,670,846 – 9,670,960	+	11	128	76.96	-2.05	0.41	0.755589
9892	dm3.chr3R	9,670,846 – 9,670,960	- - - - - - - -	13592	9,670,846 – 9,670,960	-	11	128	76.96	-1.99	0.43	0.782971
9893	dm3.chr3R	9,673,838 – 9,673,929	- - - - - - - -	13593	9,673,838 – 9,673,929	-	4	91	87.00	-2.56	0.70	0.918858
9894	dm3.chr3R	9,679,388 – 9,679,484	- - - - - - - -	13594	9,679,388 – 9,679,484	+	10	110	78.26	-0.84	0.72	0.634960
9894	dm3.chr3R	9,679,388 – 9,679,484	- - - - - - - -	13595	9,679,388 – 9,679,484	-	10	110	78.26	-1.42	0.81	0.961795
9895	dm3.chr3R	9,682,079 – 9,682,171	- - - - - - - -	13596	9,682,079 – 9,682,171	-	12	120	74.34	-1.77	0.51	0.910780
9896	dm3.chr3R	9,696,462 – 9,696,558	- - - intron="intron;ID=intron_FBgn0008646:3_FBgn0008646:2;Name=E5-in;Parent=FBtr0082880;parent_type=mRNA" - - - -	13597	9,696,462 – 9,696,558	+	11	100	79.77	-2.03	0.46	0.764531
9897	dm3.chr3R	9,700,299 – 9,700,367	- - - - - - - -	13598	9,700,299 – 9,700,367	+	5	68	97.65	-1.37	1.01	0.902455
9898	dm3.chr3R	9,702,775 – 9,702,873	- - - - - - - -	13599	9,702,775 – 9,702,873	-	7	98	69.06	-1.07	0.42	0.507260
9899	dm3.chr3R	9,707,784 – 9,707,875	- - - - - - - -	13600	9,707,784 – 9,707,875	-	7	113	59.72	-1.63	0.36	0.931095
9900	dm3.chr3R	9,708,552 – 9,708,718	- - - - - - - -	13601	9,708,552 – 9,708,642	+	4	95	87.93	-1.97	0.89	0.945829
				13602	9,708,575 – 9,708,682	+	4	112	87.67	-2.13	0.68	0.587917
				13603	9,708,614 – 9,708,718	+	5	109	86.60	-2.85	0.73	0.981185
9901	dm3.chr3R	9,709,560 – 9,709,691	- - - - - - - -	13604	9,709,560 – 9,709,653	-	6	115	79.69	-2.55	0.75	0.992300
9901	dm3.chr3R	9,709,560 – 9,709,691	- - - - - - - -	13605	9,709,600 – 9,709,691	-	6	113	73.43	-1.68	0.51	0.794854
9902	dm3.chr3R	9,718,007 – 9,718,146	- - - - - - - -	13606	9,718,007 – 9,718,120	-	12	120	93.76	-2.21	0.81	0.854450
9902	dm3.chr3R	9,718,007 – 9,718,146	- - - - - - - -	13607	9,718,045 – 9,718,146	-	11	108	77.90	-1.22	0.70	0.892865
9903	dm3.chr3R	9,726,187 – 9,726,300	- - - - - - - -	13608	9,726,187 – 9,726,300	-	10	118	65.03	-1.29	0.39	0.893140
9904	dm3.chr3R	9,735,307 – 9,735,403	- - - - - - - -	13609	9,735,307 – 9,735,403	-	11	114	88.62	-2.03	0.69	0.671217
9905	dm3.chr3R	9,744,656 – 9,744,749	- - - - - - - -	13610	9,744,656 – 9,744,749	+	11	115	73.48	-1.15	0.56	0.623579
9906	dm3.chr3R	9,747,184 – 9,747,285	- - - - - - - -	13611	9,747,184 – 9,747,285	-	12	120	88.40	-0.98	0.91	0.589476
9907	dm3.chr3R	9,750,162 – 9,750,323	- - - - - - - -	13612	9,750,162 – 9,750,256	-	12	117	63.22	-0.11	0.54	0.595928
				13613	9,750,182 – 9,750,296	+	12	119	84.80	-3.08	0.85	0.998111
				13614	9,750,182 – 9,750,296	-	12	119	84.80	-1.38	0.79	0.801280
				13615	9,750,216 – 9,750,323	+	12	115	86.43	-3.30	0.77	0.997783
9908	dm3.chr3R	9,752,762 – 9,752,857	- - - - - - - -	13616	9,752,762 – 9,752,857	+	12	106	75.69	-1.21	0.55	0.742615
9909	dm3.chr3R	9,759,108 – 9,759,199	- - - - - - - -	13617	9,759,108 – 9,759,199	+	8	109	66.95	-1.83	0.59	0.994414
9910	dm3.chr3R	9,763,616 – 9,763,722	- - - - - - - -	13618	9,763,616 – 9,763,722	-	4	116	78.02	-1.95	0.61	0.804360
9911	dm3.chr3R	9,764,762 – 9,764,882	- - - - - - - -	13619	9,764,762 – 9,764,882	-	12	120	98.24	-1.16	0.96	0.588350
9912	dm3.chr3R	9,766,451 – 9,766,553	- - - - - - - -	13620	9,766,451 – 9,766,553	-	12	120	92.73	-1.64	0.85	0.654802
9913	dm3.chr3R	9,766,701 – 9,766,828	- - - - - - - -	13621	9,766,701 – 9,766,796	+	5	110	87.08	-1.30	0.86	0.635687
9913	dm3.chr3R	9,766,701 – 9,766,828	- - - - - - - -	13622	9,766,733 – 9,766,828	-	5	103	90.90	-1.52	0.83	0.500000
9914	dm3.chr3R	9,766,923 – 9,767,014	- - - - - - - -	13623	9,766,923 – 9,767,014	-	12	119	84.59	-2.59	0.48	0.672516
9915	dm3.chr3R	9,769,499 – 9,769,610	- - - - - - - -	13624	9,769,499 – 9,769,610	+	8	115	76.11	-2.26	0.40	0.806391
9916	dm3.chr3R	9,775,309 – 9,775,400	- - - - - - - -	13625	9,775,309 – 9,775,400	+	5	98	68.90	-1.32	0.51	0.816163
9917	dm3.chr3R	9,791,480 – 9,791,588	- - CDS="CDS;ID=CDS_CG3041:3_15;Name=Orc2-cds;Parent=FBtr0082866;parent_type=mRNA" - - - - -	13626	9,791,480 – 9,791,588	-	12	108	77.46	-0.88	0.61	0.559750
9918	dm3.chr3R	9,804,123 – 9,804,220	- - - - - - - -	13627	9,804,123 – 9,804,218	-	4	101	83.07	-2.47	0.77	0.970119
9918	dm3.chr3R	9,804,123 – 9,804,220	- - - - - - - -	13628	9,804,125 – 9,804,220	-	4	101	82.36	-2.39	0.81	0.977694
9919	dm3.chr3R	9,810,429 – 9,810,530	- - - - - - - -	13629	9,810,429 – 9,810,530	+	6	107	71.58	-1.21	0.59	0.854764
9920	dm3.chr3R	9,810,682 – 9,810,784	- - - - - - - -	13630	9,810,682 – 9,810,784	-	5	102	91.76	-1.22	0.92	0.642737
9921	dm3.chr3R	9,823,367 – 9,823,461	- - - - - - - -	13631	9,823,367 – 9,823,461	-	8	98	69.98	-0.47	0.65	0.762668
9922	dm3.chr3R	9,825,317 – 9,825,391	- - - - - - - -	13632	9,825,317 – 9,825,391	+	6	77	91.42	-1.86	0.90	0.919970
9922	dm3.chr3R	9,825,317 – 9,825,391	- - - - - - - -	13633	9,825,317 – 9,825,391	-	6	77	91.42	-3.11	0.78	0.986879
9923	dm3.chr3R	9,825,928 – 9,826,000	- - - - - - - -	13634	9,825,928 – 9,826,000	+	5	74	96.70	-1.74	0.92	0.814259
9924	dm3.chr3R	9,826,506 – 9,826,564	- - - - - - - -	13635	9,826,506 – 9,826,564	+	5	71	78.96	-2.28	0.51	0.740880
9924	dm3.chr3R	9,826,506 – 9,826,564	- - - - - - - -	13636	9,826,506 – 9,826,564	-	5	71	78.96	-2.08	0.69	0.938893
9925	dm3.chr3R	9,829,886 – 9,829,983	- - - - - - - -	13637	9,829,886 – 9,829,983	+	9	104	79.39	-1.41	0.61	0.644633
9926	dm3.chr3R	9,830,171 – 9,830,264	- - - - - - - -	13638	9,830,171 – 9,830,264	+	4	99	86.10	-2.62	0.75	0.956213
9926	dm3.chr3R	9,830,171 – 9,830,264	- - - - - - - -	13639	9,830,171 – 9,830,264	+	4	96	88.26	-2.65	0.82	0.975388
9927	dm3.chr3R	9,849,445 – 9,849,500	- - - - - - - -	13640	9,849,445 – 9,849,500	-	7	60	68.23	-2.48	0.29	0.870030
9928	dm3.chr3R	9,870,242 – 9,870,338	FBnoncoding="tRNA;ID=FBtr0082919;Name=tRNA:S2b:88A-RA;Parent=FBgn0011971;Dbxref=FlyBase_Annotation_IDs:CR31476-RA;score_text=Weakly" tRNAscann="Ser_chr3R_trna59" - - "Rfam_10.0=RF00005;tRNA;ABAV01026808.1/8968-9050\|2.7e-32" "Noncode_2.0=n202744_u198018_AK082357_mRNAlike\|1.7e-33" "unique_Noncode_2.0=u198018_mRNAlike\|1.5e-33" -	13641	9,870,242 – 9,870,338	+	13	111	90.49	-1.83	0.98	0.978909
9928	dm3.chr3R	9,870,242 – 9,870,338		13642	9,870,242 – 9,870,338	-	13	111	90.49	-1.98	0.99	0.987009
9929	dm3.chr3R	9,875,892 – 9,875,992	- - - - - - - -	13643	9,875,892 – 9,875,988	+	8	116	81.87	-1.05	0.90	0.783314
				13644	9,875,896 – 9,875,992	+	7	105	85.57	-1.08	0.87	0.632459
				13645	9,875,896 – 9,875,992	-	7	105	85.57	-1.64	0.70	0.524345
9930	dm3.chr3R	9,880,866 – 9,880,971	- - - - - - - -	13646	9,880,866 – 9,880,971	-	5	108	71.30	-1.73	0.47	0.771062
9931	dm3.chr3R	9,907,001 – 9,907,104	- - CDS="CDS;ID=CDS_FBgn0038197:12_238;Name=foxo-cds;Parent=FBtr0305052;parent_type=mRNA" - - - - -	13647	9,907,001 – 9,907,104	+	12	116	77.51	-1.28	0.58	0.591623
9932	dm3.chr3R	9,911,122 – 9,911,217	- - - intron="intron;ID=intron_FBgn0038197:14_FBgn0038197:15;Name=foxo-in;Parent=FBtr0305052,FBtr0082886,FBtr0082887;parent_type=mRNA" - - - -	13648	9,911,122 – 9,911,217	+	9	96	82.26	-1.42	0.66	0.606463
9933	dm3.chr3R	9,920,226 – 9,920,319	- - - intron="intron;ID=intron_FBgn0038199:4_FBgn0038199:3;Name=CCHa1-in;Parent=FBtr0113232;parent_type=mRNA" - - - -	13649	9,920,226 – 9,920,319	+	9	96	78.84	-2.14	0.37	0.541980
9934	dm3.chr3R	9,924,398 – 9,924,473	- - - - - - - -	13650	9,924,398 – 9,924,473	-	11	96	66.03	-2.19	0.29	0.872790
9935	dm3.chr3R	9,926,940 – 9,927,032	- - CDS="CDS;ID=CDS_FBgn0038201:4_2;Name=CG9918-cds;Parent=FBtr0100131;parent_type=mRNA" - - - - -	13651	9,926,940 – 9,927,032	-	14	99	70.67	-1.09	0.44	0.742666
9936	dm3.chr3R	9,945,627 – 9,945,742	- - - - - - - -	13652	9,945,627 – 9,945,737	+	8	118	65.82	-2.88	0.48	0.999646
				13653	9,945,627 – 9,945,737	-	8	118	65.82	-3.05	0.37	0.998821
				13654	9,945,632 – 9,945,742	+	8	120	67.73	-4.05	0.53	0.999956
				13655	9,945,632 – 9,945,742	-	8	120	67.73	-3.70	0.42	0.999813
9937	dm3.chr3R	9,946,215 – 9,946,310	- - - intron="intron;ID=intron_FBgn0020510:3_FBgn0020510:2;Name=Abi-in;Parent=FBtr0082910,FBtr0112896;parent_type=mRNA" - - - -	13656	9,946,215 – 9,946,310	+	5	115	75.18	-2.33	0.59	0.977502
9937	dm3.chr3R	9,946,215 – 9,946,310		13657	9,946,215 – 9,946,310	-	5	115	75.18	-1.57	0.57	0.681570
9938	dm3.chr3R	9,958,997 – 9,959,060	- - - - - - - -	13658	9,958,997 – 9,959,060	-	12	71	76.73	-2.15	0.47	0.899231
9939	dm3.chr3R	9,959,320 – 9,959,415	- - - - - - - -	13659	9,959,320 – 9,959,415	+	6	108	77.91	-1.56	0.74	0.909692
9940	dm3.chr3R	9,961,028 – 9,961,234	- - - - - - - -	13660	9,961,028 – 9,961,130	-	5	104	70.31	-1.62	0.45	0.791542
9940	dm3.chr3R	9,961,028 – 9,961,234	- - - - - - - -	13661	9,961,130 – 9,961,234	-	12	120	82.69	-1.86	0.68	0.840167
9941	dm3.chr3R	9,969,544 – 9,969,666	- - - - - - - -	13662	9,969,544 – 9,969,634	-	9	106	62.94	-1.31	0.37	0.716970
9941	dm3.chr3R	9,969,544 – 9,969,666	- - - - - - - -	13663	9,969,561 – 9,969,666	-	8	105	65.98	-1.82	0.33	0.912490
9942	dm3.chr3R	9,971,983 – 9,972,143	- - - - - - - -	13664	9,971,983 – 9,972,088	-	11	112	70.86	-1.52	0.53	0.965777
9942	dm3.chr3R	9,971,983 – 9,972,143	- - - - - - - -	13665	9,972,048 – 9,972,143	+	11	114	68.69	-1.47	0.40	0.801207
9943	dm3.chr3R	9,988,092 – 9,988,206	- - - - - - - -	13666	9,988,092 – 9,988,206	+	6	142	62.61	-1.25	0.53	0.918393
9943	dm3.chr3R	9,988,092 – 9,988,206	- - - - - - - -	13667	9,988,092 – 9,988,206	-	6	142	62.61	-0.95	0.56	0.850017
9944	dm3.chr3R	9,994,946 – 9,995,004	- - - - - - - -	13668	9,994,946 – 9,995,004	+	5	59	93.21	-0.98	0.95	0.557366
9945	dm3.chr3R	9,999,075 – 9,999,189	- - - - - - - -	13669	9,999,075 – 9,999,189	+	9	116	76.33	-1.63	0.56	0.892369
9946	dm3.chr3R	10,001,167 – 10,001,260	- - - - - - - -	13670	10,001,167 – 10,001,260	+	7	106	68.11	-0.69	0.54	0.655457
9947	dm3.chr3R	10,004,608 – 10,004,705	- - - intron="intron;ID=intron_FBgn0011582:2_FBgn0011582:1;Name=DopR-in;Parent=FBtr0290283,FBtr0301351;parent_type=mRNA" - - - -	13671	10,004,608 – 10,004,705	-	9	109	69.56	-0.81	0.59	0.879578
9948	dm3.chr3R	10,015,066 – 10,015,170	- - - intron="intron;ID=intron_FBgn0011582:3_FBgn0011582:2;Name=DopR-in;Parent=FBtr0290283,FBtr0301351;parent_type=mRNA" - - - -	13672	10,015,066 – 10,015,170	+	5	104	95.00	-1.88	0.84	0.650071
9949	dm3.chr3R	10,016,229 – 10,016,316	- - - intron="intron;ID=intron_FBgn0011582:3_FBgn0011582:2;Name=DopR-in;Parent=FBtr0290283,FBtr0301351;parent_type=mRNA" - - - -	13673	10,016,229 – 10,016,316	-	8	97	64.55	-1.15	0.59	0.982285
9950	dm3.chr3R	10,060,869 – 10,060,960	- - - - - - - -	13674	10,060,869 – 10,060,960	+	10	113	82.06	-1.66	0.73	0.871830
9950	dm3.chr3R	10,060,869 – 10,060,960	- - - - - - - -	13675	10,060,869 – 10,060,960	-	10	113	82.06	-1.49	0.82	0.907555
9951	dm3.chr3R	10,086,120 – 10,086,172	- - CDS="CDS;ID=CDS_CG14840:1_40;Name=CG14840-cds;Parent=FBtr0082952;parent_type=mRNA" - - - - -	13676	10,086,120 – 10,086,172	-	8	52	80.29	-0.86	0.80	0.706663
9952	dm3.chr3R	10,086,500 – 10,086,615	- - CDS="CDS;ID=CDS_CG14840:1_40;Name=CG14840-cds;Parent=FBtr0082952;parent_type=mRNA" - - - - -	13677	10,086,500 – 10,086,615	+	10	116	67.57	-1.06	0.37	0.541101
9952	dm3.chr3R	10,086,500 – 10,086,615		13678	10,086,500 – 10,086,615	-	10	116	67.57	-0.81	0.46	0.758813
9953	dm3.chr3R	10,102,270 – 10,102,395	- - CDS="CDS;ID=CDS_CG8651:2_14;Name=trx-cds;Parent=FBtr0082947;parent_type=mRNA" - - - - -	13679	10,102,270 – 10,102,395	+	6	140	75.49	-1.45	0.54	0.545457
9954	dm3.chr3R	10,109,165 – 10,109,255	- - - intron="intron;ID=intron_CG8651:1_CG8651:17;Name=trx-in;Parent=FBtr0082947,FBtr0082948;parent_type=mRNA" - - - -	13680	10,109,165 – 10,109,255	+	10	102	64.40	-0.89	0.43	0.741306
9955	dm3.chr3R	10,110,207 – 10,110,321	- - - intron="intron;ID=intron_CG8651:1_CG8651:17;Name=trx-in;Parent=FBtr0082947,FBtr0082948;parent_type=mRNA" - - - -	13681	10,110,207 – 10,110,321	+	7	128	69.23	-1.46	0.42	0.716378
9956	dm3.chr3R	10,120,754 – 10,120,831	- - - intron="intron;ID=intron_CG12207:2_CG12207:3;Name=CG12207-in;Parent=FBtr0082921,FBtr0082922;parent_type=mRNA" - - - -	13682	10,120,754 – 10,120,831	+	5	83	66.37	-2.07	0.31	0.608604
9957	dm3.chr3R	10,123,839 – 10,123,959	- - - intron="intron;ID=intron_CG12207:2_CG12207:3;Name=CG12207-in;Parent=FBtr0082921,FBtr0082922;parent_type=mRNA" - - - -	13683	10,123,839 – 10,123,959	+	4	120	76.81	-1.79	0.60	0.785419
9958	dm3.chr3R	10,124,914 – 10,125,017	- - - intron="intron;ID=intron_CG12207:3_CG12207:4;Name=CG12207-in;Parent=FBtr0082921,FBtr0082922,FBtr0082923;parent_type=mRNA" - - - -	13684	10,124,914 – 10,125,017	+	3	104	98.08	-1.26	0.96	0.637916
9959	dm3.chr3R	10,149,089 – 10,149,141	- - - intron="intron;ID=intron_FBgn0038223:2_FBgn0038223:1;Name=CG8538-in;Parent=FBtr0273391;parent_type=mRNA" - - - -	13685	10,149,089 – 10,149,141	-	4	53	94.03	-2.77	0.94	0.991946
9960	dm3.chr3R	10,163,838 – 10,163,937	- - - intron="intron;ID=intron_FBgn0024321:2_FBgn0024321:1;Name=NK7.1-in;Parent=FBtr0082941,FBtr0082942;parent_type=mRNA" - - - -	13686	10,163,838 – 10,163,937	+	4	104	55.28	-1.67	0.53	0.995569
9960	dm3.chr3R	10,163,838 – 10,163,937		13687	10,163,838 – 10,163,937	-	4	104	55.28	-2.04	0.42	0.992633
9961	dm3.chr3R	10,164,415 – 10,164,478	- - - intron="intron;ID=intron_FBgn0024321:2_FBgn0024321:1;Name=NK7.1-in;Parent=FBtr0082941,FBtr0082942;parent_type=mRNA" - - - -	13688	10,164,415 – 10,164,478	-	8	63	95.06	-1.82	0.90	0.842522
9962	dm3.chr3R	10,169,552 – 10,169,693	- - - intron="intron;ID=intron_FBgn0024321:3_FBgn0024321:2;Name=NK7.1-in;Parent=FBtr0082941,FBtr0082942;parent_type=mRNA" - - - -	13689	10,169,552 – 10,169,664	-	12	118	86.44	-1.74	0.74	0.804829
9962	dm3.chr3R	10,169,552 – 10,169,693		13690	10,169,585 – 10,169,693	-	12	121	84.29	-2.00	0.78	0.949917
9963	dm3.chr3R	10,187,708 – 10,187,799	- - - intron="intron;ID=intron_FBgn0024321:4_FBgn0024321:3;Name=NK7.1-in;Parent=FBtr0082942;parent_type=mRNA" - - - -	13691	10,187,708 – 10,187,799	+	6	106	68.20	-1.91	0.39	0.693872
9964	dm3.chr3R	10,205,840 – 10,205,941	- - - - - - - -	13692	10,205,840 – 10,205,941	+	12	113	89.22	-2.10	0.69	0.733183
9965	dm3.chr3R	10,206,786 – 10,206,895	- - CDS="CDS;ID=CDS_CG8489:1_197;Name=soti-cds;Parent=FBtr0082940;parent_type=mRNA" - - - - -	13693	10,206,786 – 10,206,895	-	12	119	67.92	-2.27	0.45	0.995255
9966	dm3.chr3R	10,210,926 – 10,211,018	- - - - - - - -	13694	10,210,926 – 10,211,018	-	11	101	80.99	-1.73	0.67	0.876617
9967	dm3.chr3R	10,212,854 – 10,212,957	- - - - - - - -	13695	10,212,854 – 10,212,957	-	6	103	74.05	-2.66	0.43	0.982323
9968	dm3.chr3R	10,217,720 – 10,217,815	- - - - - - - -	13696	10,217,720 – 10,217,815	+	4	95	82.98	-3.40	0.71	0.996907
9968	dm3.chr3R	10,217,720 – 10,217,815	- - - - - - - -	13697	10,217,720 – 10,217,815	-	4	95	82.98	-3.44	0.72	0.997333
9969	dm3.chr3R	10,226,925 – 10,227,027	- - - intron="intron;ID=intron_FBgn0085418:8_FBgn0085418:7;Name=cv-c-in;Parent=FBtr0112631;parent_type=mRNA" - - - -	13698	10,226,925 – 10,227,027	+	6	102	77.25	-1.26	0.57	0.519416
9969	dm3.chr3R	10,226,925 – 10,227,027		13699	10,226,925 – 10,227,027	-	6	102	77.25	-1.79	0.51	0.771346
9970	dm3.chr3R	10,236,123 – 10,236,223	- - CDS="CDS;ID=CDS_FBgn0085418:11_137;Name=cv-c-cds;Parent=FBtr0112630;parent_type=mRNA" - - - - -	13700	10,236,123 – 10,236,223	-	12	112	77.38	-1.83	0.46	0.682192
9971	dm3.chr3R	10,237,916 – 10,238,067	- - - intron="intron;ID=intron_FBgn0085418:12_FBgn0085418:11;Name=cv-c-in;Parent=FBtr0112630,FBtr0112632;parent_type=mRNA" - - - -	13701	10,237,916 – 10,238,007	-	12	106	71.78	-2.58	0.45	0.994879
				13702	10,237,945 – 10,238,044	-	12	115	75.03	-2.06	0.51	0.966230
				13703	10,237,973 – 10,238,067	-	12	119	71.53	-1.60	0.51	0.843941
9972	dm3.chr3R	10,239,881 – 10,239,973	- - - intron="intron;ID=intron_FBgn0085418:12_FBgn0085418:11;Name=cv-c-in;Parent=FBtr0112630,FBtr0112632;parent_type=mRNA" - - - -	13704	10,239,881 – 10,239,973	-	10	104	72.59	-1.94	0.38	0.755097
9973	dm3.chr3R	10,245,348 – 10,245,493	- - - intron="intron;ID=intron_FBgn0085417:1_FBgn0085417:2;Name=CG34388-in;Parent=FBtr0112629,FBtr0301081;parent_type=mRNA" - - - -	13705	10,245,348 – 10,245,443	-	7	96	78.43	-1.87	0.48	0.648242
				13706	10,245,371 – 10,245,476	+	9	113	84.05	-1.86	0.68	0.755063
				13707	10,245,371 – 10,245,476	-	9	113	84.05	-2.65	0.53	0.878097
				13708	10,245,403 – 10,245,493	+	11	119	83.38	-1.27	0.74	0.500000
9974	dm3.chr3R	10,248,365 – 10,248,456	- - - - - - - -	13709	10,248,365 – 10,248,456	-	3	91	91.73	-2.38	0.81	0.883789
9975	dm3.chr3R	10,250,971 – 10,251,067	- - - - - - - -	13710	10,250,971 – 10,251,067	+	12	110	81.48	-1.62	0.62	0.754157
9976	dm3.chr3R	10,252,914 – 10,253,087	- - CDS="CDS;ID=CDS_FBgn0085418:13_137;Name=cv-c-cds;Parent=FBtr0112630;parent_type=mRNA" - - - - -	13711	10,252,914 – 10,253,008	+	3	94	89.30	-0.83	0.96	0.525271
				13712	10,252,914 – 10,253,008	-	3	94	89.30	-1.92	0.90	0.920655
				13713	10,252,985 – 10,253,087	+	4	102	70.72	-1.27	0.60	0.562099
9977	dm3.chr3R	10,256,393 – 10,256,483	- - - intron="intron;ID=intron_FBgn0085418:14_FBgn0085418:13;Name=cv-c-in;Parent=FBtr0112630,FBtr0112632;parent_type=mRNA" - - - -	13714	10,256,393 – 10,256,483	-	12	110	81.55	-1.65	0.66	0.724968
9978	dm3.chr3R	10,263,403 – 10,263,469	- - - intron="intron;ID=intron_FBgn0085418:15_FBgn0085418:14;Name=cv-c-in;Parent=FBtr0112630,FBtr0112632;parent_type=mRNA" - - - -	13715	10,263,403 – 10,263,469	-	7	66	72.81	-1.05	0.62	0.898125
9979	dm3.chr3R	10,269,264 – 10,269,382	- - - intron="intron;ID=intron_FBgn0085418:15_FBgn0085418:14;Name=cv-c-in;Parent=FBtr0112630,FBtr0112632;parent_type=mRNA" - - - -	13716	10,269,264 – 10,269,382	-	9	119	73.25	-1.20	0.48	0.558721
9980	dm3.chr3R	10,273,026 – 10,273,123	- - - intron="intron;ID=intron_FBgn0085418:15_FBgn0085418:14;Name=cv-c-in;Parent=FBtr0112630,FBtr0112632;parent_type=mRNA" - - - -	13717	10,273,026 – 10,273,123	+	6	97	88.45	-1.60	0.77	0.554811
9981	dm3.chr3R	10,297,929 – 10,298,042	- - - intron="intron;ID=intron_FBgn0085418:17_FBgn0085418:15;Name=cv-c-in;Parent=FBtr0112630;parent_type=mRNA" - - - -	13718	10,297,929 – 10,298,023	+	8	115	61.70	-2.01	0.29	0.880921
9981	dm3.chr3R	10,297,929 – 10,298,042		13719	10,297,936 – 10,298,042	+	6	112	76.42	-2.49	0.52	0.979033
9982	dm3.chr3R	10,298,465 – 10,298,562	- - - intron="intron;ID=intron_FBgn0085418:17_FBgn0085418:15;Name=cv-c-in;Parent=FBtr0112630;parent_type=mRNA" - - - -	13720	10,298,465 – 10,298,562	+	5	110	76.85	-1.56	0.68	0.831393
9983	dm3.chr3R	10,310,447 – 10,310,537	- - - - - - - -	13721	10,310,447 – 10,310,537	-	8	117	63.66	-1.09	0.42	0.570995
9984	dm3.chr3R	10,316,091 – 10,316,199	- - - - - - - -	13722	10,316,091 – 10,316,199	+	12	119	80.62	-1.72	0.63	0.834532
9984	dm3.chr3R	10,316,091 – 10,316,199	- - - - - - - -	13723	10,316,091 – 10,316,199	-	12	119	80.62	-3.41	0.59	0.998422
9985	dm3.chr3R	10,321,748 – 10,321,850	- - - - - - - -	13724	10,321,748 – 10,321,850	-	4	102	89.83	-3.36	0.66	0.974339
9986	dm3.chr3R	10,322,536 – 10,322,633	- - - - - - - -	13725	10,322,536 – 10,322,633	+	12	119	76.74	-1.48	0.74	0.949258
9986	dm3.chr3R	10,322,536 – 10,322,633	- - - - - - - -	13726	10,322,536 – 10,322,633	-	12	119	76.74	-1.84	0.57	0.919475
9987	dm3.chr3R	10,325,095 – 10,325,221	- - - - - - - -	13727	10,325,095 – 10,325,221	+	7	130	73.39	-1.08	0.62	0.700699
9988	dm3.chr3R	10,326,390 – 10,326,489	- - - - - - - -	13728	10,326,390 – 10,326,489	+	7	105	79.04	-1.41	0.66	0.800824
9989	dm3.chr3R	10,329,808 – 10,329,932	- - - - - - - -	13729	10,329,808 – 10,329,899	+	5	100	90.69	-1.08	0.95	0.717684
9989	dm3.chr3R	10,329,808 – 10,329,932	- - - - - - - -	13730	10,329,833 – 10,329,932	+	5	116	85.81	-2.60	0.80	0.983134
9990	dm3.chr3R	10,346,110 – 10,346,204	- - - intron="intron;ID=intron_FBgn0038237:9_FBgn0038237:8;Name=Pde6-in;Parent=FBtr0300330;parent_type=mRNA" - - - -	13731	10,346,110 – 10,346,204	+	7	110	67.94	-1.62	0.41	0.810956
9991	dm3.chr3R	10,350,769 – 10,350,860	- - - intron="intron;ID=intron_FBgn0038237:11_FBgn0038237:10;Name=Pde6-in;Parent=FBtr0300330;parent_type=mRNA" - - - -	13732	10,350,769 – 10,350,860	+	8	106	60.31	-1.24	0.30	0.596517
9992	dm3.chr3R	10,385,760 – 10,385,863	- - - - - - - -	13733	10,385,760 – 10,385,863	+	9	111	64.97	-2.22	0.36	0.987752
9993	dm3.chr3R	10,391,878 – 10,392,013	- - CDS="CDS;ID=CDS_CG14852:1_53;Name=CG14852-cds;Parent=FBtr0082957;parent_type=mRNA" - - - - -	13734	10,391,878 – 10,392,013	-	6	141	71.55	-1.20	0.58	0.857262
9994	dm3.chr3R	10,393,776 – 10,393,866	- - - - - - - -	13735	10,393,776 – 10,393,866	+	7	97	66.92	-0.74	0.66	0.920093
9995	dm3.chr3R	10,396,523 – 10,396,631	- - CDS="CDS;ID=CDS_CG7987:6_17;Name=CG7987-cds;Parent=FBtr0082978,FBtr0082979;parent_type=mRNA" - - - - -	13736	10,396,523 – 10,396,631	+	13	117	72.83	-1.42	0.39	0.500000
9996	dm3.chr3R	10,416,565 – 10,416,667	- - - intron="intron;ID=intron_FBgn0020299:2_FBgn0020299:3;Name=stumps-in;Parent=FBtr0112893;parent_type=mRNA" - - - -	13737	10,416,565 – 10,416,667	-	7	113	64.43	-0.83	0.58	0.872902
9997	dm3.chr3R	10,425,579 – 10,425,670	- - - intron="intron;ID=intron_FBgn0020299:7_FBgn0020299:8;Name=stumps-in;Parent=FBtr0082959;parent_type=mRNA" - - - -	13738	10,425,579 – 10,425,670	+	7	102	58.97	-1.77	0.32	0.935519
9997	dm3.chr3R	10,425,579 – 10,425,670		13739	10,425,579 – 10,425,670	-	7	102	58.97	-1.19	0.38	0.859140
9998	dm3.chr3R	10,452,471 – 10,452,563	- - - - - - - -	13740	10,452,471 – 10,452,563	-	7	95	68.29	-1.57	0.46	0.956078
9999	dm3.chr3R	10,459,560 – 10,459,650	- - - intron="intron;ID=intron_FBgn0038248:8_FBgn0038248:7;Name=CG7886-in;Parent=FBtr0082976;parent_type=mRNA" - - - -	13741	10,459,560 – 10,459,650	+	8	112	66.12	-2.07	0.35	0.902482
9999	dm3.chr3R	10,459,560 – 10,459,650		13742	10,459,560 – 10,459,650	-	8	112	66.12	-1.49	0.38	0.652129
10000	dm3.chr3R	10,460,869 – 10,460,966	- - - intron="intron;ID=intron_CG3389:1_CG3389:2;Name=Cad88C-in;Parent=FBtr0082965;parent_type=mRNA" - - - -	13743	10,460,869 – 10,460,966	+	6	115	65.41	-1.06	0.43	0.616580
10001	dm3.chr3R	10,471,212 – 10,471,330	- - CDS="CDS;ID=CDS_FBgn0086686:4_238;Name=l(3)L1231-cds;Parent=FBtr0304677;parent_type=mRNA" - - - - -	13744	10,471,212 – 10,471,330	+	13	121	73.42	-1.69	0.47	0.957752
10001	dm3.chr3R	10,471,212 – 10,471,330		13745	10,471,212 – 10,471,330	-	13	121	73.42	-1.65	0.56	0.987293
10002	dm3.chr3R	10,474,368 – 10,474,425	- - - intron="intron;ID=intron_FBgn0086686:6_FBgn0086686:5;Name=l(3)L1231-in;Parent=FBtr0082975,FBtr0304677,FBtr0304678;parent_type=mRNA" - - - -	13746	10,474,368 – 10,474,425	+	5	57	80.04	-2.38	0.83	0.992785
10002	dm3.chr3R	10,474,368 – 10,474,425		13747	10,474,368 – 10,474,425	-	5	57	80.04	-2.02	0.69	0.939492
10003	dm3.chr3R	10,482,787 – 10,482,863	- - - - - - - -	13748	10,482,787 – 10,482,863	+	3	87	77.20	-2.56	0.91	0.995108
10003	dm3.chr3R	10,482,787 – 10,482,863	- - - - - - - -	13749	10,482,787 – 10,482,863	-	3	87	77.20	-1.81	0.74	0.851048
10004	dm3.chr3R	10,496,466 – 10,496,567	- - CDS="CDS;ID=CDS_FBgn0051314:5_94;Name=Neu3-cds;Parent=FBtr0301499;parent_type=mRNA" - - - - -	13750	10,496,466 – 10,496,567	+	5	114	59.64	-1.82	0.58	0.998275
10004	dm3.chr3R	10,496,466 – 10,496,567		13751	10,496,466 – 10,496,567	-	5	114	59.64	-1.63	0.37	0.904872
10005	dm3.chr3R	10,508,429 – 10,508,524	- - - intron="intron;ID=intron_FBgn0051314:9_FBgn0051314:8;Name=Neu3-in;Parent=FBtr0301498,FBtr0301499;parent_type=mRNA" - - - -	13752	10,508,429 – 10,508,524	+	7	106	75.93	-1.93	0.51	0.823523
10006	dm3.chr3R	10,511,870 – 10,511,984	- - - intron="intron;ID=intron_FBgn0051314:9_FBgn0051314:8;Name=Neu3-in;Parent=FBtr0301498,FBtr0301499;parent_type=mRNA" - - - -	13753	10,511,870 – 10,511,984	+	6	116	63.31	-1.11	0.48	0.905004
10007	dm3.chr3R	10,514,379 – 10,514,483	- - - intron="intron;ID=intron_FBgn0051314:9_FBgn0051314:8;Name=Neu3-in;Parent=FBtr0301498,FBtr0301499;parent_type=mRNA" - - - -	13754	10,514,379 – 10,514,483	+	6	107	73.40	-1.48	0.61	0.928168
10008	dm3.chr3R	10,515,184 – 10,515,276	- - - intron="intron;ID=intron_FBgn0051314:9_FBgn0051314:8;Name=Neu3-in;Parent=FBtr0301498,FBtr0301499;parent_type=mRNA" - - - -	13755	10,515,184 – 10,515,276	+	4	94	88.35	-1.97	0.74	0.650313
10009	dm3.chr3R	10,516,356 – 10,516,429	- - - intron="intron;ID=intron_FBgn0051314:9_FBgn0051314:8;Name=Neu3-in;Parent=FBtr0301498,FBtr0301499;parent_type=mRNA" - - - -	13756	10,516,356 – 10,516,429	+	5	73	90.96	-2.03	0.81	0.814217
10009	dm3.chr3R	10,516,356 – 10,516,429		13757	10,516,356 – 10,516,429	-	5	73	90.96	-1.82	0.79	0.599878
10010	dm3.chr3R	10,518,167 – 10,518,241	- - - intron="intron;ID=intron_FBgn0051314:9_FBgn0051314:8;Name=Neu3-in;Parent=FBtr0301498,FBtr0301499;parent_type=mRNA" - - - -	13758	10,518,167 – 10,518,241	+	5	74	68.80	-0.59	0.63	0.577299
10011	dm3.chr3R	10,543,009 – 10,543,100	- - - intron="intron;ID=intron_CG33967:1_CG33967:2;Name=kibra-in;Parent=FBtr0100008;parent_type=mRNA" - - - -	13759	10,543,009 – 10,543,100	+	7	107	72.66	-1.67	0.46	0.766874
10011	dm3.chr3R	10,543,009 – 10,543,100		13760	10,543,009 – 10,543,100	-	7	107	72.66	-1.38	0.52	0.751318
10012	dm3.chr3R	10,544,025 – 10,544,125	- - - intron="intron;ID=intron_CG33967:1_CG33967:2;Name=kibra-in;Parent=FBtr0100008;parent_type=mRNA" - - - -	13761	10,544,025 – 10,544,125	-	11	119	83.45	-1.11	0.81	0.647895
10013	dm3.chr3R	10,562,404 – 10,562,506	- - - intron="intron;ID=intron_CG7425:3_CG7425:4;Name=eff-in;Parent=FBtr0083018;parent_type=mRNA" - - - -	13762	10,562,404 – 10,562,506	+	5	103	82.94	-2.16	0.67	0.842565
10014	dm3.chr3R	10,564,639 – 10,564,729	- - - intron="intron;ID=intron_CG7425:2_CG7425:3;Name=eff-in;Parent=FBtr0083018;parent_type=mRNA" - - - -	13763	10,564,639 – 10,564,729	-	8	94	72.90	-1.09	0.51	0.648876
10015	dm3.chr3R	10,569,533 – 10,569,593	- - - intron="intron;ID=intron_FBgn0262718:1_FBgn0262718:6;Name=CG43162-in;Parent=FBtr0305690,FBtr0305692,FBtr0305694;parent_type=mRNA" - - - -	13764	10,569,533 – 10,569,593	+	6	60	77.33	-2.92	0.86	0.998666
10015	dm3.chr3R	10,569,533 – 10,569,593		13765	10,569,533 – 10,569,593	-	6	60	77.33	-3.55	0.87	0.999294
10016	dm3.chr3R	10,580,700 – 10,580,797	- - - intron="intron;ID=intron_CG7362:2_CG7362:3;Name=CG7362-in;Parent=FBtr0083015;parent_type=mRNA" - - - -	13766	10,580,700 – 10,580,791	+	5	106	77.73	-2.08	0.72	0.968057
10016	dm3.chr3R	10,580,700 – 10,580,797		13767	10,580,706 – 10,580,797	+	5	106	78.14	-1.63	0.79	0.927387
10017	dm3.chr3R	10,596,614 – 10,596,680	- - - - - - - -	13768	10,596,614 – 10,596,680	+	6	78	66.76	-2.07	0.37	0.875369
10018	dm3.chr3R	10,612,622 – 10,612,720	- - - intron="intron;ID=intron_FBgn0262718:4_FBgn0262718:6;Name=CG43162-in;Parent=FBtr0305691;parent_type=mRNA" - - - -	13769	10,612,622 – 10,612,720	-	6	117	72.13	-1.03	0.59	0.590130
10019	dm3.chr3R	10,614,153 – 10,614,291	- - CDS="CDS;ID=CDS_FBgn0262718:6_261;Name=CG43162-cds;Parent=FBtr0305689,FBtr0305691;parent_type=mRNA" - - - - -	13770	10,614,153 – 10,614,291	-	15	150	75.85	-1.21	0.46	0.500000
10020	dm3.chr3R	10,615,629 – 10,615,705	- - CDS="CDS;ID=CDS_FBgn0262718:10_261;Name=CG43162-cds;Parent=FBtr0305689,FBtr0305691;parent_type=mRNA" - - - - -	13771	10,615,629 – 10,615,705	+	12	76	86.00	-1.90	0.60	0.593042
10021	dm3.chr3R	10,647,423 – 10,647,513	- - - - - - - -	13772	10,647,423 – 10,647,513	+	6	92	67.36	-1.20	0.43	0.608107
10022	dm3.chr3R	10,653,418 – 10,653,492	- - - intron="intron;ID=intron_FBgn0053555:20_FBgn0053555:18;Name=btsz-in;Parent=FBtr0091530,FBtr0273200;parent_type=mRNA" - - - -	13773	10,653,418 – 10,653,492	-	6	81	82.27	-2.48	0.52	0.827132
10023	dm3.chr3R	10,667,981 – 10,668,082	- - - intron="intron;ID=intron_FBgn0053555:20_FBgn0053555:18;Name=btsz-in;Parent=FBtr0091530,FBtr0273200;parent_type=mRNA" - - - -	13774	10,667,981 – 10,668,082	+	6	111	63.44	-2.89	0.33	0.996012
10023	dm3.chr3R	10,667,981 – 10,668,082		13775	10,667,981 – 10,668,082	-	6	111	63.44	-2.42	0.41	0.996252
10024	dm3.chr3R	10,670,366 – 10,670,506	- - - intron="intron;ID=intron_FBgn0053555:20_FBgn0053555:18;Name=btsz-in;Parent=FBtr0091530,FBtr0273200;parent_type=mRNA" - - - -	13776	10,670,366 – 10,670,506	-	5	140	92.98	-1.64	0.84	0.555758
10025	dm3.chr3R	10,675,016 – 10,675,122	- - - intron="intron;ID=intron_FBgn0053555:20_FBgn0053555:18;Name=btsz-in;Parent=FBtr0091530,FBtr0273200;parent_type=mRNA" - - - -	13777	10,675,016 – 10,675,122	+	8	107	78.97	-2.69	0.51	0.972548
10025	dm3.chr3R	10,675,016 – 10,675,122		13778	10,675,016 – 10,675,122	-	8	107	78.97	-2.79	0.68	0.996375
10026	dm3.chr3R	10,675,251 – 10,675,356	- - - intron="intron;ID=intron_FBgn0053555:20_FBgn0053555:18;Name=btsz-in;Parent=FBtr0091530,FBtr0273200;parent_type=mRNA" - - - -	13779	10,675,251 – 10,675,356	-	4	105	93.17	-1.07	1.00	0.821978
10027	dm3.chr3R	10,677,272 – 10,677,325	- - - intron="intron;ID=intron_FBgn0053555:20_FBgn0053555:18;Name=btsz-in;Parent=FBtr0091530,FBtr0273200;parent_type=mRNA" - - - -	13780	10,677,272 – 10,677,325	-	5	53	88.07	-2.61	0.53	0.537028
10028	dm3.chr3R	10,680,419 – 10,680,511	- - - - - - - -	13781	10,680,419 – 10,680,511	+	6	100	74.23	-1.35	0.52	0.564224
10029	dm3.chr3R	10,687,395 – 10,687,455	- - - - - - - -	13782	10,687,395 – 10,687,455	-	8	64	68.02	-0.83	0.47	0.571377
10030	dm3.chr3R	10,691,996 – 10,692,107	- - - - - - - -	13783	10,691,996 – 10,692,107	-	11	144	74.37	-1.26	0.60	0.855684
10031	dm3.chr3R	10,692,194 – 10,692,256	- - - - - - - -	13784	10,692,194 – 10,692,256	-	6	72	72.93	-1.66	0.49	0.723478
10032	dm3.chr3R	10,693,276 – 10,693,328	- - - - - - - -	13785	10,693,276 – 10,693,328	-	7	59	80.26	-2.06	0.70	0.938431
10033	dm3.chr3R	10,705,141 – 10,705,233	- - - - - - - -	13786	10,705,141 – 10,705,233	-	4	93	92.61	-1.50	0.86	0.513685
10034	dm3.chr3R	10,717,352 – 10,717,493	- - - intron="intron;ID=intron_FBgn0038271:6_FBgn0038271:7;Name=CG3731-in;Parent=FBtr0083000,FBtr0083001;parent_type=mRNA" - - - -	13787	10,717,352 – 10,717,459	+	15	119	74.18	-0.28	0.67	0.578134
10034	dm3.chr3R	10,717,352 – 10,717,493		13788	10,717,392 – 10,717,493	+	14	111	58.99	-0.36	0.49	0.896152
10035	dm3.chr3R	10,717,545 – 10,717,640	- - - - - - - -	13789	10,717,545 – 10,717,640	+	9	97	70.79	-0.82	0.52	0.615463
10036	dm3.chr3R	10,728,288 – 10,728,392	- - - - - - - -	13790	10,728,288 – 10,728,392	+	11	117	66.72	-3.05	0.36	0.998734
10036	dm3.chr3R	10,728,288 – 10,728,392	- - - - - - - -	13791	10,728,288 – 10,728,392	-	11	117	66.72	-3.75	0.47	0.999943
10037	dm3.chr3R	10,730,079 – 10,730,154	- - - - - - - -	13792	10,730,079 – 10,730,154	+	5	76	73.58	-1.73	0.56	0.909307
10037	dm3.chr3R	10,730,079 – 10,730,154	- - - - - - - -	13793	10,730,079 – 10,730,154	-	5	76	73.58	-1.70	0.45	0.591196
10038	dm3.chr3R	10,770,987 – 10,771,077	- - - - - - - -	13794	10,770,987 – 10,771,077	-	3	90	96.30	-1.92	0.86	0.669986
10039	dm3.chr3R	10,774,755 – 10,774,811	- - - - - - - -	13795	10,774,755 – 10,774,811	+	5	56	98.57	-2.04	0.95	0.935528
10040	dm3.chr3R	10,784,453 – 10,784,546	- - - - - - - -	13796	10,784,453 – 10,784,546	+	8	93	65.64	-0.35	0.59	0.641583
10041	dm3.chr3R	10,791,421 – 10,791,500	- - - - - - - -	13797	10,791,421 – 10,791,500	+	7	83	79.74	-2.78	0.59	0.991631
10042	dm3.chr3R	10,793,011 – 10,793,075	- - - - - - - -	13798	10,793,011 – 10,793,075	-	8	74	58.53	-1.10	0.35	0.720014
10043	dm3.chr3R	10,813,775 – 10,813,870	- - - - - - - -	13799	10,813,775 – 10,813,868	-	12	100	59.74	-0.34	0.69	0.979690
10043	dm3.chr3R	10,813,775 – 10,813,870	- - - - - - - -	13800	10,813,777 – 10,813,870	-	12	103	59.54	-0.69	0.64	0.988364
10044	dm3.chr3R	10,816,285 – 10,816,389	- - - - - - - -	13801	10,816,285 – 10,816,389	+	8	121	70.52	-2.23	0.41	0.933727
10044	dm3.chr3R	10,816,285 – 10,816,389	- - - - - - - -	13802	10,816,285 – 10,816,389	-	8	121	70.52	-4.24	0.47	0.999859
10045	dm3.chr3R	10,816,811 – 10,816,901	- - - - - - - -	13803	10,816,811 – 10,816,901	+	6	97	75.67	-2.60	0.44	0.957924
10046	dm3.chr3R	10,818,189 – 10,818,304	- - - - - - - -	13804	10,818,189 – 10,818,281	+	12	111	74.77	-2.17	0.42	0.854441
				13805	10,818,189 – 10,818,281	-	12	111	74.77	-1.37	0.54	0.682077
				13806	10,818,209 – 10,818,304	+	11	108	69.53	-1.44	0.43	0.793074
				13807	10,818,209 – 10,818,304	-	11	108	69.53	-1.08	0.48	0.710686
10047	dm3.chr3R	10,832,795 – 10,832,917	- - - - - - - -	13808	10,832,795 – 10,832,894	+	11	110	76.09	-1.21	0.51	0.555651
				13809	10,832,795 – 10,832,894	-	11	110	76.09	-1.56	0.70	0.978343
				13810	10,832,823 – 10,832,917	-	11	105	83.10	-1.82	0.84	0.967725
10048	dm3.chr3R	10,836,958 – 10,837,050	- - - - - - - -	13811	10,836,958 – 10,837,050	+	12	120	69.15	-0.66	0.54	0.508596
10049	dm3.chr3R	10,850,304 – 10,850,387	- - - - - - - -	13812	10,850,304 – 10,850,387	+	4	83	92.57	-1.63	0.91	0.818804
10049	dm3.chr3R	10,850,304 – 10,850,387	- - - - - - - -	13813	10,850,304 – 10,850,387	-	4	83	92.57	-1.64	0.88	0.722890
10050	dm3.chr3R	10,850,740 – 10,850,847	- - - - - - - -	13814	10,850,740 – 10,850,847	+	3	107	90.16	-1.88	0.81	0.656043
10051	dm3.chr3R	10,855,937 – 10,855,988	- - - - - - - -	13815	10,855,937 – 10,855,988	-	3	51	100.00	-0.95	1.00	0.596133
10052	dm3.chr3R	10,874,378 – 10,874,503	- - - - - - - -	13816	10,874,378 – 10,874,503	+	6	140	80.10	-1.69	0.61	0.637994
10052	dm3.chr3R	10,874,378 – 10,874,503	- - - - - - - -	13817	10,874,378 – 10,874,503	-	6	140	80.10	-1.92	0.58	0.737406
10053	dm3.chr3R	10,879,417 – 10,879,502	- - - - - - - -	13818	10,879,417 – 10,879,502	+	7	87	63.75	-2.24	0.20	0.729592
10053	dm3.chr3R	10,879,417 – 10,879,502	- - - - - - - -	13819	10,879,417 – 10,879,502	-	7	87	63.75	-1.69	0.41	0.981204
10054	dm3.chr3R	10,885,316 – 10,885,368	- - - intron="intron;ID=intron_CG33485:3_CG33485:5;Name=dpr9-in;Parent=FBtr0089376;parent_type=mRNA" - - - -	13820	10,885,316 – 10,885,368	-	3	52	91.03	-1.33	0.90	0.586676
10055	dm3.chr3R	10,894,199 – 10,894,332	- - - intron="intron;ID=intron_CG33485:8_CG33485:4;Name=dpr9-in;Parent=FBtr0089376;parent_type=mRNA" - - - -	13821	10,894,199 – 10,894,304	-	8	117	78.36	-1.90	0.55	0.765972
				13822	10,894,232 – 10,894,331	-	6	108	71.93	-1.75	0.44	0.727639
				13823	10,894,233 – 10,894,332	-	6	108	71.58	-1.74	0.42	0.663809
10056	dm3.chr3R	10,895,229 – 10,895,327	- - - intron="intron;ID=intron_CG33485:8_CG33485:4;Name=dpr9-in;Parent=FBtr0089376;parent_type=mRNA" - - - -	13824	10,895,229 – 10,895,327	+	7	104	71.45	-1.81	0.40	0.520447
10057	dm3.chr3R	10,912,980 – 10,913,104	- - - intron="intron;ID=intron_FBgn0038286:5_FBgn0038286:4;Name=CG6966-in;Parent=FBtr0113236;parent_type=mRNA" - - - -	13825	10,912,980 – 10,913,079	+	4	104	76.53	-3.19	0.62	0.995745
				13826	10,913,008 – 10,913,104	+	7	111	71.37	-2.32	0.65	0.995843
				13827	10,913,008 – 10,913,104	-	7	111	71.37	-2.61	0.59	0.997063
10058	dm3.chr3R	10,917,772 – 10,917,865	- - - intron="intron;ID=intron_FBgn0038286:5_FBgn0038286:4;Name=CG6966-in;Parent=FBtr0113236;parent_type=mRNA" - - - -	13828	10,917,772 – 10,917,865	-	5	93	97.74	-0.97	1.01	0.732744
10059	dm3.chr3R	10,921,457 – 10,921,589	- - - - - - - -	13829	10,921,457 – 10,921,589	+	5	159	62.49	-3.22	0.54	0.999868
10059	dm3.chr3R	10,921,457 – 10,921,589	- - - - - - - -	13830	10,921,457 – 10,921,589	-	5	159	62.49	-3.84	0.35	0.999674
10060	dm3.chr3R	10,937,656 – 10,937,749	- - CDS="CDS;ID=CDS_FBgn0261859:10_270;Name=CG42788-cds;Parent=FBtr0303485,FBtr0303486;parent_type=mRNA" - - - - -	13831	10,937,656 – 10,937,749	+	11	102	70.94	-1.27	0.49	0.747603
10061	dm3.chr3R	10,942,546 – 10,942,603	- - - intron="intron;ID=intron_FBgn0261859:11_FBgn0261859:10;Name=CG42788-in;Parent=FBtr0303485,FBtr0303486;parent_type=mRNA" - - - -	13832	10,942,546 – 10,942,603	-	4	59	85.34	-1.68	0.75	0.583002
10062	dm3.chr3R	10,961,138 – 10,961,189	- - - intron="intron;ID=intron_FBgn0038290:2_FBgn0038290:1;Name=CG6912-in;Parent=FBtr0083038;parent_type=mRNA" - - - -	13833	10,961,138 – 10,961,189	-	3	51	96.08	-2.16	1.00	0.984286
10063	dm3.chr3R	10,962,041 – 10,962,092	- - CDS="CDS;ID=CDS_FBgn0038290:2_224;Name=CG6912-cds;Parent=FBtr0083038;parent_type=mRNA" - - - - -	13834	10,962,041 – 10,962,092	+	4	51	76.47	-1.66	0.70	0.882650
10064	dm3.chr3R	10,975,315 – 10,975,410	- - - - - - - -	13835	10,975,315 – 10,975,410	+	10	114	67.66	-1.28	0.56	0.974354
10065	dm3.chr3R	10,981,470 – 10,981,560	- - - - - - - -	13836	10,981,470 – 10,981,560	-	10	110	64.43	-0.85	0.41	0.513219
10066	dm3.chr3R	10,987,297 – 10,987,387	- - - - - - - -	13837	10,987,297 – 10,987,387	+	3	117	69.80	-2.22	0.47	0.845404
10066	dm3.chr3R	10,987,297 – 10,987,387	- - - - - - - -	13838	10,987,297 – 10,987,387	-	3	117	69.80	-1.10	0.69	0.639023
10067	dm3.chr3R	10,997,015 – 10,997,116	- - CDS="CDS;ID=CDS_FBgn0038294:1_92;Name=Mf-cds;Parent=FBtr0083033;parent_type=mRNA" - - - - -	13839	10,997,015 – 10,997,116	+	8	102	76.25	-1.42	0.60	0.861243
10068	dm3.chr3R	11,005,915 – 11,006,029	- - - - - - - -	13840	11,005,915 – 11,006,029	-	12	120	89.79	-3.19	0.74	0.991190
10069	dm3.chr3R	11,025,033 – 11,025,192	- - CDS="CDS;ID=CDS_FBgn0260659:5_206;Name=CG42542-cds;Parent=FBtr0302324;parent_type=mRNA" - - - - -	13841	11,025,033 – 11,025,192	+	15	176	80.81	-3.47	0.39	0.990331
10069	dm3.chr3R	11,025,033 – 11,025,192		13842	11,025,033 – 11,025,192	-	15	176	80.81	-3.04	0.34	0.910997
10070	dm3.chr3R	11,040,709 – 11,040,828	- - CDS="CDS;ID=CDS_FBgn0038303:1_153;Name=SIDL-cds;Parent=FBtr0083138;parent_type=mRNA" - - - - -	13843	11,040,709 – 11,040,828	+	13	120	78.27	-2.43	0.34	0.769113
10071	dm3.chr3R	11,069,044 – 11,069,142	- - - intron="intron;ID=intron_FBgn0001219:4_FBgn0001219:7;Name=Hsc70-4-in;Parent=FBtr0083059;parent_type=mRNA" - - - -	13844	11,069,044 – 11,069,142	-	7	101	60.66	-1.68	0.36	0.958206
10072	dm3.chr3R	11,076,412 – 11,076,518	- - - intron="intron;ID=intron_FBgn0259823:1_FBgn0259823:2;Name=CG42404-in;Parent=FBtr0305613,FBtr0305614;parent_type=mRNA" - - - -	13845	11,076,412 – 11,076,518	-	4	120	66.87	-1.41	0.55	0.845282
10073	dm3.chr3R	11,076,595 – 11,076,724	- - - intron="intron;ID=intron_FBgn0259823:1_FBgn0259823:2;Name=CG42404-in;Parent=FBtr0305613,FBtr0305614;parent_type=mRNA" - - - -	13846	11,076,595 – 11,076,724	-	6	129	84.57	-2.67	0.62	0.954796
10074	dm3.chr3R	11,112,855 – 11,112,945	- - - intron="intron;ID=intron_FBgn0003721:7_FBgn0003721:10;Name=Tm1-in;Parent=FBtr0089963;parent_type=mRNA" - - - -	13847	11,112,855 – 11,112,945	+	7	99	71.47	-2.49	0.57	0.997383
10074	dm3.chr3R	11,112,855 – 11,112,945		13848	11,112,855 – 11,112,945	-	7	99	71.47	-1.45	0.55	0.901571
10075	dm3.chr3R	11,119,147 – 11,119,246	- - - intron="intron;ID=intron_FBgn0003721:13_FBgn0003721:14;Name=Tm1-in;Parent=FBtr0089960,FBtr0305656;parent_type=mRNA" - - - -	13849	11,119,147 – 11,119,241	+	8	94	78.92	-2.50	0.52	0.974128
10075	dm3.chr3R	11,119,147 – 11,119,246		13850	11,119,152 – 11,119,246	+	8	95	76.23	-2.72	0.49	0.991057
10076	dm3.chr3R	11,119,925 – 11,120,081	- - - intron="intron;ID=intron_FBgn0003721:13_FBgn0003721:14;Name=Tm1-in;Parent=FBtr0089960,FBtr0305656;parent_type=mRNA" - - - -	13851	11,119,925 – 11,120,021	+	5	103	62.82	-1.12	0.50	0.905004
				13852	11,119,925 – 11,120,021	-	5	103	62.82	-1.46	0.51	0.975036
				13853	11,119,955 – 11,120,060	-	5	107	70.01	-1.66	0.40	0.629519
				13854	11,119,982 – 11,120,081	-	4	100	76.55	-1.65	0.57	0.556477
10077	dm3.chr3R	11,120,328 – 11,120,423	- - - intron="intron;ID=intron_FBgn0003721:13_FBgn0003721:14;Name=Tm1-in;Parent=FBtr0089960,FBtr0305656;parent_type=mRNA" - - - -	13855	11,120,328 – 11,120,423	-	6	101	76.80	-1.67	0.54	0.774875
10078	dm3.chr3R	11,122,307 – 11,122,435	- - CDS="CDS;ID=CDS_FBgn0003721:18_170;Name=Tm1-cds;Parent=FBtr0089961;parent_type=mRNA" intron="intron;ID=intron_FBgn0003721:16_FBgn0003721:20;Name=Tm1-in;Parent=FBtr0089968,FBtr0089960,FBtr0301960,FBtr0305656;parent_type=mRNA" - - - -	13856	11,122,307 – 11,122,435	-	15	138	90.84	-2.18	0.78	0.900410
10079	dm3.chr3R	11,137,614 – 11,137,720	- - - intron="intron;ID=intron_FBgn0004117:2_FBgn0004117:4;Name=Tm2-in;Parent=FBtr0083080;parent_type=mRNA" - - - -	13857	11,137,614 – 11,137,720	-	6	110	74.71	-2.07	0.40	0.668481
10080	dm3.chr3R	11,158,887 – 11,158,942	- - - - - - - -	13858	11,158,887 – 11,158,942	+	6	63	58.45	-0.22	0.51	0.670362
10081	dm3.chr3R	11,184,035 – 11,184,129	- - - intron="intron;ID=intron_CG5044:4_CG5044:3;Name=CG5044-in;Parent=FBtr0083091;parent_type=mRNA" - - - -	13859	11,184,035 – 11,184,129	+	11	114	62.36	-2.35	0.37	0.996121
10082	dm3.chr3R	11,200,372 – 11,200,476	- - - - - - - -	13860	11,200,372 – 11,200,476	+	10	112	78.21	-3.53	0.73	0.999433
10082	dm3.chr3R	11,200,372 – 11,200,476	- - - - - - - -	13861	11,200,372 – 11,200,476	-	10	112	78.21	-1.49	0.61	0.710061
10083	dm3.chr3R	11,206,873 – 11,206,970	- - CDS="CDS;ID=CDS_FBgn0262483:2_153;Name=CG43073-cds;Parent=FBtr0304826,FBtr0304827;parent_type=mRNA" - - - - -	13862	11,206,873 – 11,206,970	+	12	112	84.68	-1.83	0.83	0.951034
10083	dm3.chr3R	11,206,873 – 11,206,970		13863	11,206,873 – 11,206,970	-	12	112	84.68	-0.80	0.87	0.517719
10084	dm3.chr3R	11,209,379 – 11,209,498	- - - intron="intron;ID=intron_FBgn0262483:7_FBgn0262483:10;Name=CG43073-in;Parent=FBtr0304824;parent_type=mRNA" - - - -	13864	11,209,379 – 11,209,498	+	12	120	93.55	-1.70	0.86	0.719815
10085	dm3.chr3R	11,213,733 – 11,213,853	- - CDS="CDS;ID=CDS_FBgn0262483:16_238;Name=CG43073-cds;Parent=FBtr0304823,FBtr0304824;parent_type=mRNA" - - - - -	13865	11,213,733 – 11,213,853	+	13	120	86.40	-2.35	0.74	0.976545
10085	dm3.chr3R	11,213,733 – 11,213,853		13866	11,213,733 – 11,213,853	-	13	120	86.40	-1.69	0.79	0.897247
10086	dm3.chr3R	11,214,077 – 11,214,171	- - CDS="CDS;ID=CDS_FBgn0262483:16_238;Name=CG43073-cds;Parent=FBtr0304823,FBtr0304824;parent_type=mRNA" - - - - -	13867	11,214,077 – 11,214,171	+	14	115	72.75	-2.24	0.31	0.760750
10086	dm3.chr3R	11,214,077 – 11,214,171		13868	11,214,077 – 11,214,171	-	14	115	72.75	-1.83	0.38	0.758528
10087	dm3.chr3R	11,221,280 – 11,221,372	- - - intron="intron;ID=intron_FBgn0262483:21_FBgn0262483:22;Name=CG43073-in;Parent=FBtr0304822,FBtr0304823,FBtr0304825,FBtr0304826,FBtr0304827,FBtr0304828;parent_type=mRNA" - - - -	13869	11,221,280 – 11,221,372	+	6	98	82.47	-2.25	0.61	0.881892
10087	dm3.chr3R	11,221,280 – 11,221,372		13870	11,221,280 – 11,221,372	-	6	98	82.47	-1.78	0.61	0.555505
10088	dm3.chr3R	11,222,046 – 11,222,108	- - CDS="CDS;ID=CDS_FBgn0262483:22_238;Name=CG43073-cds;Parent=FBtr0304823;parent_type=mRNA" - - - - -	13871	11,222,046 – 11,222,108	-	12	62	98.41	-1.30	0.97	0.734307
10089	dm3.chr3R	11,225,156 – 11,225,270	- - - - - - - -	13872	11,225,156 – 11,225,270	-	12	114	94.75	-2.29	0.89	0.951999
10090	dm3.chr3R	11,241,052 – 11,241,157	- - CDS="CDS;ID=CDS_FBgn0041188:8_117;Name=Atx2-cds;Parent=FBtr0083100;parent_type=mRNA" - - - - -	13873	11,241,052 – 11,241,157	-	13	114	75.61	-1.47	0.45	0.630940
10091	dm3.chr3R	11,243,122 – 11,243,222	FBnoncoding="pre_miRNA;ID=FBtr0304169;Name=mir-13b-1-RM;Parent=FBgn0262367;Alias=CR42878-RM;Dbxref=FlyBase_Annotation_IDs:CR42878-RM,miRBase:MI0000134" - - - "Rfam_10.0=RF00047;mir-2;AASW01010650.1/86-152\|1.1e-28" "Noncode_2.0=n178676_u177774_NW_045688_miRNA_Anopheles\|8.1e-08" "unique_Noncode_2.0=u177774_miRNA_Anopheles\|7.1e-08" "mirBase_v16=dme-mir-13b-1\|2.1e-33"	13874	11,243,122 – 11,243,222	+	13	114	77.75	-2.38	0.50	0.980230
10091	dm3.chr3R	11,243,122 – 11,243,222		13875	11,243,122 – 11,243,222	-	13	114	77.75	-3.17	0.63	0.999377
10092	dm3.chr3R	11,244,060 – 11,244,161	- - - - - "Noncode_2.0=n210168_u204194_AK086830_mRNAlike\|8.2e-08" "unique_Noncode_2.0=u204194_mRNAlike\|7.2e-08" -	13876	11,244,060 – 11,244,161	-	6	110	71.38	-1.28	0.51	0.718558
10093	dm3.chr3R	11,249,760 – 11,249,814	- - CDS="CDS;ID=CDS_FBgn0038339:3_138;Name=CG6118-cds;Parent=FBtr0113239;parent_type=mRNA" - - - - -	13877	11,249,760 – 11,249,814	-	13	55	80.37	-1.63	0.50	0.564762
10094	dm3.chr3R	11,255,888 – 11,255,996	- - - - - - - -	13878	11,255,888 – 11,255,996	-	8	117	69.80	-3.20	0.20	0.913436
10095	dm3.chr3R	11,259,134 – 11,259,232	- - - - - - - -	13879	11,259,134 – 11,259,232	-	5	106	93.28	-1.34	0.94	0.751810
10096	dm3.chr3R	11,269,620 – 11,269,763	- - CDS="CDS;ID=CDS_CG14869:16_89;Name=CG14869-cds;Parent=FBtr0083160;parent_type=mRNA" - - - - -	13880	11,269,620 – 11,269,723	+	6	103	75.79	-2.04	0.46	0.860881
10096	dm3.chr3R	11,269,620 – 11,269,763		13881	11,269,646 – 11,269,763	+	7	117	72.36	-1.76	0.48	0.940214
10097	dm3.chr3R	11,271,972 – 11,272,074	- - - intron="intron;ID=intron_CG14869:9_CG14869:10;Name=CG14869-in;Parent=FBtr0083160,FBtr0083159;parent_type=mRNA" - - - -	13882	11,271,972 – 11,272,074	+	6	102	64.79	-1.30	0.45	0.935896
10097	dm3.chr3R	11,271,972 – 11,272,074		13883	11,271,972 – 11,272,074	-	6	102	64.79	-1.48	0.33	0.667253
10098	dm3.chr3R	11,273,404 – 11,273,462	- - CDS="CDS;ID=CDS_CG14869:7_89;Name=CG14869-cds;Parent=FBtr0083160;parent_type=mRNA" - - - - -	13884	11,273,404 – 11,273,462	+	14	58	71.86	-0.72	0.49	0.641081
10098	dm3.chr3R	11,273,404 – 11,273,462		13885	11,273,404 – 11,273,462	-	14	58	71.86	-0.93	0.42	0.500000
10099	dm3.chr3R	11,298,058 – 11,298,177	- - - intron="intron;ID=intron_CG14869:1_CG14869:2;Name=CG14869-in;Parent=FBtr0083159;parent_type=mRNA" - - - -	13886	11,298,058 – 11,298,164	+	8	115	64.81	-0.78	0.44	0.738614
10099	dm3.chr3R	11,298,058 – 11,298,177		13887	11,298,073 – 11,298,177	+	8	111	67.34	-0.62	0.46	0.530713
10100	dm3.chr3R	11,302,251 – 11,302,343	- - - - - - - -	13888	11,302,251 – 11,302,343	+	5	100	61.73	-1.26	0.51	0.947175
10100	dm3.chr3R	11,302,251 – 11,302,343	- - - - - - - -	13889	11,302,251 – 11,302,343	-	5	100	61.73	-1.14	0.43	0.724446
10101	dm3.chr3R	11,302,774 – 11,302,877	- - - - - - - -	13890	11,302,774 – 11,302,877	-	3	103	84.74	-1.08	0.92	0.669753
10102	dm3.chr3R	11,304,587 – 11,304,693	- - - - - - - -	13891	11,304,587 – 11,304,693	-	10	116	76.24	-2.53	0.39	0.893976
10103	dm3.chr3R	11,314,730 – 11,314,825	- - - intron="intron;ID=intron_CG5205:3_CG5205:4;Name=CG5205-in;Parent=FBtr0083147;parent_type=mRNA" - - - -	13892	11,314,730 – 11,314,825	+	11	108	59.58	-0.86	0.43	0.923883
10104	dm3.chr3R	11,318,897 – 11,318,993	- - - - - - - -	13893	11,318,897 – 11,318,993	+	7	103	69.73	-2.32	0.24	0.551926
10105	dm3.chr3R	11,321,769 – 11,321,898	- - - - - - - -	13894	11,321,769 – 11,321,870	+	12	118	79.55	-1.77	0.70	0.951641
				13895	11,321,794 – 11,321,892	+	12	114	82.12	-2.15	0.60	0.918645
				13896	11,321,794 – 11,321,892	-	12	114	82.12	-2.04	0.56	0.812624
				13897	11,321,800 – 11,321,898	+	12	114	81.84	-1.94	0.62	0.886263
				13898	11,321,800 – 11,321,898	-	12	114	81.84	-2.34	0.54	0.919182
10106	dm3.chr3R	11,323,863 – 11,323,957	- - - - - - - -	13899	11,323,863 – 11,323,957	+	6	103	69.95	-1.83	0.56	0.976785
10107	dm3.chr3R	11,331,344 – 11,331,441	- - - - - - - -	13900	11,331,344 – 11,331,441	-	10	110	67.19	-1.49	0.39	0.789202
10108	dm3.chr3R	11,338,209 – 11,338,306	- - - - - - - -	13901	11,338,209 – 11,338,306	+	8	105	79.13	-2.25	0.57	0.936546
10109	dm3.chr3R	11,341,384 – 11,341,487	- - - - - - - -	13902	11,341,384 – 11,341,487	+	12	122	68.90	-1.28	0.51	0.878182
10109	dm3.chr3R	11,341,384 – 11,341,487	- - - - - - - -	13903	11,341,384 – 11,341,487	-	12	122	68.90	-1.08	0.47	0.615324
10110	dm3.chr3R	11,343,339 – 11,343,430	- - - - - - - -	13904	11,343,339 – 11,343,430	+	5	95	73.54	-1.46	0.66	0.881165
10110	dm3.chr3R	11,343,339 – 11,343,430	- - - - - - - -	13905	11,343,339 – 11,343,430	-	5	95	73.54	-1.72	0.66	0.946889
10111	dm3.chr3R	11,346,335 – 11,346,430	- - - - - - - -	13906	11,346,335 – 11,346,430	-	12	120	76.82	-1.37	0.59	0.534994
10112	dm3.chr3R	11,355,596 – 11,355,688	- - - - - - - -	13907	11,355,596 – 11,355,688	-	11	104	79.10	-1.15	0.63	0.607769
10113	dm3.chr3R	11,381,904 – 11,382,050	- - - - - - - -	13908	11,381,904 – 11,382,050	+	6	162	63.93	-1.20	0.41	0.703592
10114	dm3.chr3R	11,383,185 – 11,383,291	- - - - - - - -	13909	11,383,185 – 11,383,291	+	12	119	70.35	-1.98	0.48	0.986576
10114	dm3.chr3R	11,383,185 – 11,383,291	- - - - - - - -	13910	11,383,185 – 11,383,291	-	12	119	70.35	-1.46	0.46	0.886301
10115	dm3.chr3R	11,387,095 – 11,387,202	- - - - - - - -	13911	11,387,095 – 11,387,202	-	7	111	75.57	-1.34	0.62	0.849235
10116	dm3.chr3R	11,396,812 – 11,396,941	- - - - - - - -	13912	11,396,812 – 11,396,941	+	4	129	69.22	-1.39	0.47	0.500000
10117	dm3.chr3R	11,403,057 – 11,403,152	- - - - - - - -	13913	11,403,057 – 11,403,152	-	8	104	76.12	-1.86	0.42	0.617153
10118	dm3.chr3R	11,404,196 – 11,404,286	- - - - - - - -	13914	11,404,196 – 11,404,286	+	12	109	73.56	-1.06	0.54	0.590026
10119	dm3.chr3R	11,405,065 – 11,405,159	- - - - - - - -	13915	11,405,065 – 11,405,159	+	10	107	60.33	-1.61	0.22	0.550356
10120	dm3.chr3R	11,414,338 – 11,414,448	- - - - - - - -	13916	11,414,338 – 11,414,448	+	3	110	72.37	-1.38	0.73	0.697082
10121	dm3.chr3R	11,424,380 – 11,424,476	- - - - - - - -	13917	11,424,380 – 11,424,476	+	11	102	74.44	-2.05	0.57	0.982376
10121	dm3.chr3R	11,424,380 – 11,424,476	- - - - - - - -	13918	11,424,380 – 11,424,476	-	11	102	74.44	-1.79	0.43	0.700513
10122	dm3.chr3R	11,427,029 – 11,427,090	- - - - - - - -	13919	11,427,029 – 11,427,090	+	3	65	65.96	-2.52	0.40	0.892481
10122	dm3.chr3R	11,427,029 – 11,427,090	- - - - - - - -	13920	11,427,029 – 11,427,090	-	3	65	65.96	-3.51	0.63	0.999518
10123	dm3.chr3R	11,434,094 – 11,434,150	- - - - - - - -	13921	11,434,094 – 11,434,150	+	6	57	66.87	-0.87	0.70	0.966703
10123	dm3.chr3R	11,434,094 – 11,434,150	- - - - - - - -	13922	11,434,094 – 11,434,150	-	6	57	66.87	-0.84	0.76	0.972065
10124	dm3.chr3R	11,440,306 – 11,440,407	- - - - - - - -	13923	11,440,306 – 11,440,407	-	12	115	72.09	-1.00	0.47	0.500000
10125	dm3.chr3R	11,453,078 – 11,453,199	- - - - - - - -	13924	11,453,078 – 11,453,182	+	9	113	75.90	-1.33	0.62	0.756818
10125	dm3.chr3R	11,453,078 – 11,453,199	- - - - - - - -	13925	11,453,108 – 11,453,199	+	9	93	72.87	-2.07	0.93	0.995440
10126	dm3.chr3R	11,454,100 – 11,454,194	- - - - - - - -	13926	11,454,100 – 11,454,194	-	12	108	84.58	-1.69	0.67	0.620433
10127	dm3.chr3R	11,468,521 – 11,468,642	- - - - - - - -	13927	11,468,521 – 11,468,642	+	7	142	69.43	-1.38	0.50	0.859295
10128	dm3.chr3R	11,476,417 – 11,476,508	- - - - - - - -	13928	11,476,417 – 11,476,508	+	12	109	66.89	-2.24	0.67	0.999402
10128	dm3.chr3R	11,476,417 – 11,476,508	- - - - - - - -	13929	11,476,417 – 11,476,508	-	12	109	66.89	-1.61	0.34	0.678013
10129	dm3.chr3R	11,481,191 – 11,481,308	- - - - - - - -	13930	11,481,191 – 11,481,308	-	6	123	73.06	-2.48	0.63	0.995486
10130	dm3.chr3R	11,481,498 – 11,481,588	- - - - - - - -	13931	11,481,498 – 11,481,588	-	7	94	80.17	-2.76	0.42	0.903666
10131	dm3.chr3R	11,506,531 – 11,506,589	- - - intron="intron;ID=intron_CG33207:3_CG33207:4;Name=pxb-in;Parent=FBtr0083162;parent_type=mRNA" - - - -	13932	11,506,531 – 11,506,589	+	7	67	73.75	-2.02	0.71	0.991875
10131	dm3.chr3R	11,506,531 – 11,506,589		13933	11,506,531 – 11,506,589	-	7	67	73.75	-1.93	0.48	0.867509
10132	dm3.chr3R	11,508,141 – 11,508,241	- - - intron="intron;ID=intron_CG33207:3_CG33207:4;Name=pxb-in;Parent=FBtr0083162;parent_type=mRNA" - - - -	13934	11,508,141 – 11,508,241	+	5	100	84.50	-2.26	0.73	0.941660
10132	dm3.chr3R	11,508,141 – 11,508,241		13935	11,508,141 – 11,508,241	-	5	100	84.50	-1.97	0.61	0.543874
10133	dm3.chr3R	11,508,270 – 11,508,368	- - - intron="intron;ID=intron_CG33207:3_CG33207:4;Name=pxb-in;Parent=FBtr0083162;parent_type=mRNA" - - - -	13936	11,508,270 – 11,508,368	-	9	114	59.47	-2.17	0.23	0.893066
10134	dm3.chr3R	11,521,058 – 11,521,154	- - CDS="CDS;ID=CDS_CG5399:1_70;Name=CG5399-cds;Parent=FBtr0083164;parent_type=mRNA" - - - - -	13937	11,521,058 – 11,521,154	+	5	96	74.32	-1.60	0.56	0.700579
10135	dm3.chr3R	11,530,043 – 11,530,126	- - - - - - - -	13938	11,530,043 – 11,530,126	+	7	85	76.99	-1.51	0.59	0.861178
10136	dm3.chr3R	11,544,903 – 11,544,965	- - - - - - - -	13939	11,544,903 – 11,544,965	-	6	62	63.15	-1.59	0.52	0.995320
10137	dm3.chr3R	11,546,068 – 11,546,166	- - - - - - - -	13940	11,546,068 – 11,546,166	-	12	119	86.37	-1.83	0.66	0.527202
10138	dm3.chr3R	11,546,984 – 11,547,095	- - - - - - - -	13941	11,546,984 – 11,547,095	+	6	122	82.64	-1.54	0.74	0.663252
10139	dm3.chr3R	11,551,194 – 11,551,288	- - - - - - - -	13942	11,551,194 – 11,551,288	+	6	101	90.16	-2.18	0.81	0.903199
10140	dm3.chr3R	11,578,065 – 11,578,188	- - - - - - - -	13943	11,578,065 – 11,578,163	+	5	101	84.25	-3.20	0.84	0.997779
				13944	11,578,065 – 11,578,163	-	5	101	84.25	-2.14	0.69	0.885630
				13945	11,578,097 – 11,578,188	+	10	99	82.57	-2.13	0.60	0.855718
10141	dm3.chr3R	11,583,923 – 11,583,983	- - - - - - - -	13946	11,583,923 – 11,583,983	+	5	60	95.92	-1.89	0.91	0.861956
10142	dm3.chr3R	11,585,590 – 11,585,710	- - - - - - - -	13947	11,585,590 – 11,585,686	+	10	119	81.77	-1.53	0.74	0.831683
10142	dm3.chr3R	11,585,590 – 11,585,710	- - - - - - - -	13948	11,585,617 – 11,585,710	+	9	103	89.30	-1.52	0.81	0.587727
10143	dm3.chr3R	11,590,629 – 11,590,722	- - - - - - - -	13949	11,590,629 – 11,590,722	+	8	106	77.75	-2.97	0.51	0.993442
10144	dm3.chr3R	11,619,121 – 11,619,217	- - - - - - - -	13950	11,619,121 – 11,619,217	-	5	96	72.02	-1.69	0.54	0.888413
10145	dm3.chr3R	11,654,126 – 11,654,205	- - - intron="intron;ID=intron_CG4576:3_CG4576:4;Name=CG4576-in;Parent=FBtr0083180;parent_type=mRNA" - - - -	13951	11,654,126 – 11,654,205	+	5	84	92.00	-1.85	0.81	0.625668
10146	dm3.chr3R	11,671,037 – 11,671,157	- - CDS="CDS;ID=CDS_CG31150:14_38;Name=CG31150-cds;Parent=FBtr0083189;parent_type=mRNA" - - - - -	13952	11,671,037 – 11,671,155	-	13	120	73.64	-1.64	0.38	0.707031
10146	dm3.chr3R	11,671,037 – 11,671,157		13953	11,671,039 – 11,671,157	-	13	120	73.22	-1.65	0.38	0.736596
10147	dm3.chr3R	11,682,840 – 11,682,930	- - - intron="intron;ID=intron_CG4225:1_CG4225:2;Name=Hmt-1-in;Parent=FBtr0083188;parent_type=mRNA" - - - -	13954	11,682,840 – 11,682,930	-	7	114	58.36	-1.63	0.36	0.940042
10148	dm3.chr3R	11,690,652 – 11,690,738	- - - intron="intron;ID=intron_CG31183:2_CG31183:3;Name=CG31183-in;Parent=FBtr0083187;parent_type=mRNA" - - - -	13955	11,690,652 – 11,690,738	+	6	87	64.53	-1.26	0.49	0.943325
10149	dm3.chr3R	11,701,450 – 11,701,558	- - - - - - - -	13956	11,701,450 – 11,701,558	-	6	108	75.53	-1.92	0.43	0.651498
10150	dm3.chr3R	11,707,129 – 11,707,230	- - - - - - - -	13957	11,707,129 – 11,707,230	+	8	115	73.24	-2.19	0.36	0.701217
10150	dm3.chr3R	11,707,129 – 11,707,230	- - - - - - - -	13958	11,707,129 – 11,707,230	-	8	115	73.24	-2.01	0.42	0.798560
10151	dm3.chr3R	11,709,583 – 11,709,777	- - - - - - - -	13959	11,709,583 – 11,709,687	-	5	114	65.67	-1.34	0.50	0.774399
				13960	11,709,687 – 11,709,777	+	5	101	89.68	-1.68	0.86	0.780841
				13961	11,709,687 – 11,709,777	-	5	101	89.68	-2.28	0.88	0.967305
10152	dm3.chr3R	11,738,796 – 11,738,991	- - CDS="CDS;ID=CDS_FBgn0085304:2_132;Name=CG34275-cds;Parent=FBtr0112470;parent_type=mRNA" - - - - -	13962	11,738,796 – 11,738,896	+	8	106	74.27	-0.92	0.71	0.799487
				13963	11,738,796 – 11,738,896	-	8	106	74.27	-1.47	0.55	0.815417
				13964	11,738,823 – 11,738,930	+	9	114	76.62	-1.55	0.54	0.753324
				13965	11,738,896 – 11,738,991	+	11	117	66.04	-0.88	0.46	0.686698
10153	dm3.chr3R	11,750,733 – 11,750,832	- - - intron="intron;ID=intron_CG4221:1_CG4221:2;Name=CG4221-in;Parent=FBtr0083201;parent_type=mRNA" - - - -	13966	11,750,733 – 11,750,832	-	6	99	75.76	-1.56	0.61	0.891256
10154	dm3.chr3R	11,751,827 – 11,751,920	- - - intron="intron;ID=intron_CG4221:1_CG4221:2;Name=CG4221-in;Parent=FBtr0083201;parent_type=mRNA" - - - -	13967	11,751,827 – 11,751,920	-	7	99	67.16	-1.95	0.50	0.988006
10155	dm3.chr3R	11,769,660 – 11,769,752	- - - intron="intron;ID=intron_FBgn0013334:7_FBgn0013334:8;Name=Sap47-in;Parent=FBtr0083206,FBtr0083207;parent_type=mRNA" - - - -	13968	11,769,660 – 11,769,752	+	4	92	88.16	-1.77	0.83	0.794654
10156	dm3.chr3R	11,771,375 – 11,771,474	- - - intron="intron;ID=intron_FBgn0013334:8_FBgn0013334:9;Name=Sap47-in;Parent=FBtr0083204,FBtr0083205,FBtr0083206,FBtr0083207,FBtr0083208;parent_type=mRNA" - - - -	13969	11,771,375 – 11,771,474	+	7	110	64.34	-2.06	0.36	0.965846
10157	dm3.chr3R	11,774,561 – 11,774,619	- - - intron="intron;ID=intron_FBgn0013334:8_FBgn0013334:9;Name=Sap47-in;Parent=FBtr0083204,FBtr0083205,FBtr0083206,FBtr0083207,FBtr0083208;parent_type=mRNA" - - - -	13970	11,774,561 – 11,774,619	-	4	59	67.42	-1.43	0.62	0.952892
10158	dm3.chr3R	11,785,235 – 11,785,349	- - - - - - - -	13971	11,785,235 – 11,785,349	+	12	120	89.01	-1.14	0.92	0.724958
10159	dm3.chr3R	11,801,528 – 11,801,605	- - - intron="intron;ID=intron_FBgn0022787:1_FBgn0022787:2;Name=Hel89B-in;Parent=FBtr0301715;parent_type=mRNA" - - - -	13972	11,801,528 – 11,801,605	+	6	91	72.99	-0.90	0.72	0.792759
10160	dm3.chr3R	11,808,500 – 11,808,591	- - - intron="intron;ID=intron_FBgn0022787:6_FBgn0022787:7;Name=Hel89B-in;Parent=FBtr0301715;parent_type=mRNA" - - - -	13973	11,808,500 – 11,808,591	-	13	103	61.89	-0.54	0.45	0.778179
10161	dm3.chr3R	11,823,453 – 11,823,545	- - - intron="intron;ID=intron_FBgn0003507:3_FBgn0003507:4;Name=srp-in;Parent=FBtr0083216,FBtr0083215;parent_type=mRNA" - - - -	13974	11,823,453 – 11,823,545	+	7	94	76.24	-1.09	0.64	0.741373
10162	dm3.chr3R	11,832,842 – 11,832,936	FBnoncoding="ncRNA;ID=FBtr0303861;Name=CR42839-RA;Parent=FBgn0262028;Dbxref=FlyBase_Annotation_IDs:CR42839-RA;score_text=Strongly" - - - - - - -	13975	11,832,842 – 11,832,936	+	7	103	80.55	-2.60	0.45	0.859307
10163	dm3.chr3R	11,835,442 – 11,835,596	- - - intron="intron;ID=intron_FBgn0038391:2_FBgn0038391:4;Name=GATAe-in;Parent=FBtr0303260;parent_type=mRNA" - - - -	13976	11,835,442 – 11,835,536	-	7	112	70.94	-1.01	0.55	0.578424
10163	dm3.chr3R	11,835,442 – 11,835,596		13977	11,835,503 – 11,835,596	-	6	110	67.19	-1.12	0.49	0.659907
10164	dm3.chr3R	11,835,677 – 11,835,772	- - - intron="intron;ID=intron_FBgn0038391:2_FBgn0038391:4;Name=GATAe-in;Parent=FBtr0303260;parent_type=mRNA" - - - -	13978	11,835,677 – 11,835,772	+	10	121	59.63	-1.88	0.22	0.509067
10165	dm3.chr3R	11,844,408 – 11,844,507	- - CDS="CDS;ID=CDS_FBgn0038391:8_78;Name=GATAe-cds;Parent=FBtr0083218;parent_type=mRNA" - - - - -	13979	11,844,408 – 11,844,507	+	6	101	75.31	-1.40	0.54	0.630499
10166	dm3.chr3R	11,846,821 – 11,846,915	- - - - - - - -	13980	11,846,821 – 11,846,915	-	6	107	76.60	-1.65	0.52	0.594205
10167	dm3.chr3R	11,860,594 – 11,860,690	- - - intron="intron;ID=intron_CG3978:1_CG3978:2;Name=pnr-in;Parent=FBtr0083220;parent_type=mRNA" - - - -	13981	11,860,594 – 11,860,690	+	5	97	79.85	-1.89	0.64	0.760105
10168	dm3.chr3R	11,862,274 – 11,862,367	- - - intron="intron;ID=intron_CG3978:5_CG3978:2;Name=pnr-in;Parent=FBtr0083221;parent_type=mRNA" - - - -	13982	11,862,274 – 11,862,367	+	12	112	70.44	-1.51	0.52	0.935464
10169	dm3.chr3R	11,864,258 – 11,864,381	- - - - - - - -	13983	11,864,258 – 11,864,381	+	10	124	67.91	-0.59	0.47	0.546621
10170	dm3.chr3R	11,882,823 – 11,882,915	- - - intron="intron;ID=intron_FBgn0027948:8_FBgn0027948:9;Name=msps-in;Parent=FBtr0304801,FBtr0304802;parent_type=mRNA" - - - -	13984	11,882,823 – 11,882,915	-	3	92	92.03	-2.34	0.80	0.848432
10171	dm3.chr3R	11,890,450 – 11,890,549	- - - intron="intron;ID=intron_CG10185:6_CG10185:7;Name=CG10185-in;Parent=FBtr0083235;parent_type=mRNA" - - - -	13985	11,890,450 – 11,890,549	+	13	112	59.24	-2.44	0.21	0.980269
10172	dm3.chr3R	11,894,972 – 11,895,080	- - CDS="CDS;ID=CDS_FBgn0026059:2_198;Name=Mhcl-cds;Parent=FBtr0083231;parent_type=mRNA" intron="intron;ID=intron_FBgn0026059:4_FBgn0026059:1;Name=Mhcl-in;Parent=FBtr0083233,FBtr0083229;parent_type=mRNA" - - - -	13986	11,894,972 – 11,895,080	-	11	117	90.28	-1.26	0.91	0.736751
10173	dm3.chr3R	11,907,746 – 11,907,848	- - - intron="intron;ID=intron_FBgn0026059:13_FBgn0026059:12;Name=Mhcl-in;Parent=FBtr0083232;parent_type=mRNA" - - - -	13987	11,907,746 – 11,907,848	+	6	105	79.91	-1.39	0.66	0.568751
10174	dm3.chr3R	11,920,446 – 11,920,499	- - - - - - - -	13988	11,920,446 – 11,920,499	-	6	56	73.59	-1.15	0.56	0.652956
10175	dm3.chr3R	11,921,238 – 11,921,336	- - - - - - - -	13989	11,921,238 – 11,921,336	-	7	98	56.89	-1.84	0.18	0.500000
10176	dm3.chr3R	11,933,831 – 11,933,926	- - - - - - - -	13990	11,933,831 – 11,933,926	-	6	116	82.01	-2.25	0.51	0.573797
10177	dm3.chr3R	11,936,420 – 11,936,510	- - - - - - - -	13991	11,936,420 – 11,936,510	+	6	92	75.80	-1.39	0.63	0.851510
10177	dm3.chr3R	11,936,420 – 11,936,510	- - - - - - - -	13992	11,936,420 – 11,936,510	-	6	92	75.80	-1.17	0.82	0.934239
10178	dm3.chr3R	11,936,693 – 11,936,790	- - - - - - - -	13993	11,936,693 – 11,936,790	-	10	107	69.22	-1.08	0.44	0.511570
10179	dm3.chr3R	11,936,863 – 11,936,955	- - - - - - - -	13994	11,936,863 – 11,936,955	-	11	114	73.78	-2.00	0.60	0.989471
10180	dm3.chr3R	11,946,250 – 11,946,358	- - - - - - - -	13995	11,946,250 – 11,946,358	+	5	108	98.06	-1.54	0.97	0.852551
10180	dm3.chr3R	11,946,250 – 11,946,358	- - - - - - - -	13996	11,946,250 – 11,946,358	-	5	108	98.06	-2.82	0.96	0.991456
10181	dm3.chr3R	11,950,663 – 11,950,718	- - - - - - - -	13997	11,950,663 – 11,950,718	-	4	55	95.45	-1.39	1.01	0.922769
10182	dm3.chr3R	11,951,392 – 11,951,482	- - - - - - - -	13998	11,951,392 – 11,951,482	-	11	120	84.42	-1.83	0.75	0.822480
10183	dm3.chr3R	11,957,599 – 11,957,707	- - - intron="intron;ID=intron_CG4316:1_CG4316:2;Name=Sb-in;Parent=FBtr0083250;parent_type=mRNA" - - - -	13999	11,957,599 – 11,957,707	+	3	114	51.83	-1.66	0.44	0.956419
10184	dm3.chr3R	11,961,074 – 11,961,168	- - - intron="intron;ID=intron_CG4316:2_CG4316:3;Name=Sb-in;Parent=FBtr0083250;parent_type=mRNA" - - - -	14000	11,961,074 – 11,961,168	+	7	102	79.88	-2.09	0.47	0.570121
10185	dm3.chr3R	11,962,829 – 11,962,919	- - - intron="intron;ID=intron_CG4316:2_CG4316:3;Name=Sb-in;Parent=FBtr0083250;parent_type=mRNA" - - - -	14001	11,962,829 – 11,962,919	+	5	92	92.73	-2.51	0.69	0.677368
10186	dm3.chr3R	12,008,838 – 12,008,939	- - - intron="intron;ID=intron_CG8927:5_CG8927:6;Name=CG8927-in;Parent=FBtr0100110;parent_type=mRNA" - - - -	14002	12,008,838 – 12,008,939	+	8	102	73.19	-1.97	0.41	0.771634
10186	dm3.chr3R	12,008,838 – 12,008,939		14003	12,008,838 – 12,008,939	-	8	102	73.19	-2.19	0.36	0.738620
10187	dm3.chr3R	12,015,325 – 12,015,444	- - - intron="intron;ID=intron_CG6072:1_CG6072:2;Name=sra-in;Parent=FBtr0083255;parent_type=mRNA" - - - -	14004	12,015,325 – 12,015,442	+	3	120	50.99	-1.17	0.57	0.983068
				14005	12,015,325 – 12,015,442	-	3	120	50.99	-1.19	0.43	0.859061
				14006	12,015,329 – 12,015,444	+	3	120	53.41	-0.70	0.59	0.887753
				14007	12,015,329 – 12,015,444	-	3	120	53.41	-1.15	0.50	0.918195
10188	dm3.chr3R	12,016,756 – 12,016,821	- - - intron="intron;ID=intron_CG6072:1_CG6072:2;Name=sra-in;Parent=FBtr0083255;parent_type=mRNA" - - - -	14008	12,016,756 – 12,016,821	+	7	66	71.27	-2.24	0.39	0.960268
10188	dm3.chr3R	12,016,756 – 12,016,821		14009	12,016,756 – 12,016,821	-	7	66	71.27	-1.40	0.42	0.648846
10189	dm3.chr3R	12,019,837 – 12,019,932	- - - intron="intron;ID=intron_CG6072:1_CG6072:2;Name=sra-in;Parent=FBtr0083255;parent_type=mRNA" - - - -	14010	12,019,837 – 12,019,932	-	6	108	71.75	-1.36	0.53	0.661435
10190	dm3.chr3R	12,031,903 – 12,031,954	- - - - - - - -	14011	12,031,903 – 12,031,954	+	9	56	68.58	-2.23	0.29	0.852168
10190	dm3.chr3R	12,031,903 – 12,031,954	- - - - - - - -	14012	12,031,903 – 12,031,954	-	9	56	68.58	-1.76	0.35	0.797048
10191	dm3.chr3R	12,037,213 – 12,037,367	- - - - - - - -	14013	12,037,213 – 12,037,311	-	5	99	74.59	-2.28	0.55	0.979055
				14014	12,037,277 – 12,037,367	+	6	91	76.83	-1.40	0.56	0.589374
				14015	12,037,277 – 12,037,367	-	6	91	76.83	-2.79	0.60	0.996462
10192	dm3.chr3R	12,042,800 – 12,042,902	- - - - - - - -	14016	12,042,800 – 12,042,902	+	4	107	88.38	-1.14	0.90	0.585906
10193	dm3.chr3R	12,044,108 – 12,044,200	- - - - - - - -	14017	12,044,108 – 12,044,200	+	11	118	71.60	-1.87	0.39	0.744832
10194	dm3.chr3R	12,048,097 – 12,048,149	- - - - - - - -	14018	12,048,097 – 12,048,149	+	5	52	86.73	-1.06	0.99	0.880052
10195	dm3.chr3R	12,057,719 – 12,057,877	- - - intron="intron;ID=intron_CG6889:1_CG6889:2;Name=tara-in;Parent=FBtr0083257;parent_type=mRNA" - - - -	14019	12,057,719 – 12,057,809	+	3	90	87.31	-3.49	0.87	0.997466
				14020	12,057,756 – 12,057,846	+	3	90	81.25	-3.41	0.93	0.998490
				14021	12,057,756 – 12,057,846	-	3	90	81.25	-2.84	0.78	0.989515
				14022	12,057,774 – 12,057,877	+	3	103	80.14	-1.67	0.71	0.522368
10196	dm3.chr3R	12,065,602 – 12,065,696	- - - intron="intron;ID=intron_CG6889:1_CG6889:2;Name=tara-in;Parent=FBtr0083257;parent_type=mRNA" - - - -	14023	12,065,602 – 12,065,696	-	6	94	91.13	-2.19	0.80	0.885848
10197	dm3.chr3R	12,073,753 – 12,073,804	- - - intron="intron;ID=intron_CG6889:3_CG6889:4;Name=tara-in;Parent=FBtr0083258;parent_type=mRNA" - - - -	14024	12,073,753 – 12,073,804	+	6	62	78.17	-1.04	0.76	0.592773
10197	dm3.chr3R	12,073,753 – 12,073,804		14025	12,073,753 – 12,073,804	-	6	62	78.17	-2.02	0.65	0.932742
10198	dm3.chr3R	12,086,656 – 12,086,770	- - - - - - - -	14026	12,086,656 – 12,086,770	-	4	120	76.05	-2.31	0.61	0.963086
10199	dm3.chr3R	12,101,818 – 12,101,910	- - - intron="intron;ID=intron_FBgn0250823:8_FBgn0250823:12;Name=gish-in;Parent=FBtr0100331,FBtr0100333;parent_type=mRNA" - - - -	14027	12,101,818 – 12,101,910	+	5	92	88.71	-2.38	0.73	0.866601
10199	dm3.chr3R	12,101,818 – 12,101,910		14028	12,101,818 – 12,101,910	-	5	92	88.71	-2.05	0.78	0.813360
10200	dm3.chr3R	12,102,564 – 12,102,736	- - - intron="intron;ID=intron_FBgn0250823:8_FBgn0250823:12;Name=gish-in;Parent=FBtr0100331,FBtr0100333;parent_type=mRNA" - - - -	14029	12,102,564 – 12,102,672	+	5	112	96.08	-1.68	0.91	0.767064
10200	dm3.chr3R	12,102,564 – 12,102,736		14030	12,102,633 – 12,102,736	+	3	103	97.09	-2.05	0.93	0.920564
10201	dm3.chr3R	12,114,539 – 12,114,651	- - - intron="intron;ID=intron_FBgn0250823:10_FBgn0250823:12;Name=gish-in;Parent=FBtr0083263,FBtr0083264;parent_type=mRNA" - - - -	14031	12,114,539 – 12,114,651	-	5	113	98.04	-1.45	0.95	0.729189
10202	dm3.chr3R	12,115,458 – 12,115,559	- - CDS="CDS;ID=CDS_FBgn0250823:12_252;Name=gish-cds;Parent=FBtr0083263;parent_type=mRNA" - - - - -	14032	12,115,458 – 12,115,559	-	14	101	89.36	-1.44	0.76	0.500000
10203	dm3.chr3R	12,118,485 – 12,118,564	- - CDS="CDS;ID=CDS_FBgn0250823:15_252;Name=gish-cds;Parent=FBtr0083263;parent_type=mRNA" - - - - -	14033	12,118,485 – 12,118,564	-	15	82	88.14	-1.95	0.72	0.829131
10204	dm3.chr3R	12,127,679 – 12,127,799	- - - - - - - -	14034	12,127,679 – 12,127,799	+	13	120	91.21	-1.26	0.85	0.523565
10205	dm3.chr3R	12,140,851 – 12,140,924	- - - - - - - -	14035	12,140,851 – 12,140,924	-	5	73	87.67	-1.40	0.81	0.527345
10206	dm3.chr3R	12,142,178 – 12,142,280	- - - intron="intron;ID=intron_FBgn0040271:9_FBgn0040271:8;Name=Sulf1-in;Parent=FBtr0083273;parent_type=mRNA" - - - -	14036	12,142,178 – 12,142,280	+	5	102	94.47	-3.38	0.93	0.996975
10206	dm3.chr3R	12,142,178 – 12,142,280		14037	12,142,178 – 12,142,280	-	5	102	94.47	-4.21	0.87	0.998327
10207	dm3.chr3R	12,147,124 – 12,147,194	FBnoncoding="tRNA;ID=FBtr0083267;Name=tRNA:F2:89BC-RA;Parent=FBgn0011858;Dbxref=FlyBase_Annotation_IDs:CR31586-RA;score_text=Weakly" tRNAscann="Phe_chr3R_trna12" - intron="intron;ID=intron_FBgn0040271:9_FBgn0040271:8;Name=Sulf1-in;Parent=FBtr0083273;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPN01177114.1/5440-5512\|1.0e-24" - - -	14038	12,147,124 – 12,147,194	-	13	70	95.82	-2.06	0.98	0.979581
10208	dm3.chr3R	12,147,388 – 12,147,500	FBnoncoding="tRNA;ID=FBtr0083268;Name=tRNA:V4:89BC-RA;Parent=FBgn0012011;Dbxref=FlyBase_Annotation_IDs:CR31587-RA;score_text=Weakly" tRNAscann="Val_chr3R_trna13" - intron="intron;ID=intron_FBgn0040271:9_FBgn0040271:8;Name=Sulf1-in;Parent=FBtr0083273;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPU01011049.1/77188-77260\|3.2e-32" - - -	14039	12,147,388 – 12,147,482	+	13	108	78.88	-1.63	0.81	0.980298
				14040	12,147,388 – 12,147,482	-	13	108	78.88	-1.55	0.77	0.969353
				14041	12,147,407 – 12,147,500	+	13	109	82.59	-1.79	0.92	0.983683
				14042	12,147,407 – 12,147,500	-	13	109	82.59	-1.59	0.97	0.979141
10209	dm3.chr3R	12,151,956 – 12,152,059	- - - intron="intron;ID=intron_FBgn0038415:3_FBgn0038415:4;Name=CG17929-in;Parent=FBtr0273219;parent_type=mRNA" - - - -	14043	12,151,956 – 12,152,059	-	5	114	88.01	-1.84	0.79	0.739355
10210	dm3.chr3R	12,156,059 – 12,156,166	- - - - - - - -	14044	12,156,059 – 12,156,166	-	11	120	65.32	-1.62	0.30	0.656814
10211	dm3.chr3R	12,173,149 – 12,173,257	- - CDS="CDS;ID=CDS_FBgn0038419:3_152;Name=CG14879-cds;Parent=FBtr0083326;parent_type=mRNA" - - - - -	14045	12,173,149 – 12,173,257	-	12	120	80.23	-2.38	0.39	0.614744
10212	dm3.chr3R	12,175,040 – 12,175,106	- - - - - - - -	14046	12,175,040 – 12,175,106	-	7	77	68.57	-0.95	0.47	0.533772
10213	dm3.chr3R	12,180,360 – 12,180,442	- - - intron="intron;ID=intron_CG10311:1_CG10311:2;Name=CG10311-in;Parent=FBtr0083324;parent_type=mRNA" - - - -	14047	12,180,360 – 12,180,442	-	8	85	68.56	-2.38	0.24	0.726172
10214	dm3.chr3R	12,182,527 – 12,182,629	- - - - - - - -	14048	12,182,527 – 12,182,629	-	7	108	61.94	-1.43	0.30	0.663758
10215	dm3.chr3R	12,185,023 – 12,185,119	- - - - - - - -	14049	12,185,023 – 12,185,119	+	6	98	73.85	-1.51	0.63	0.945566
10215	dm3.chr3R	12,185,023 – 12,185,119	- - - - - - - -	14050	12,185,023 – 12,185,119	-	6	98	73.85	-2.29	0.60	0.994290
10216	dm3.chr3R	12,188,711 – 12,188,804	- - - intron="intron;ID=intron_CG14880:6_CG14880:3;Name=CG14880-in;Parent=FBtr0083321;parent_type=mRNA" - - - -	14051	12,188,711 – 12,188,804	-	7	114	67.18	-1.52	0.39	0.655387
10217	dm3.chr3R	12,204,381 – 12,204,486	- - - intron="intron;ID=intron_FBgn0003513:7_FBgn0003513:6;Name=ss-in;Parent=FBtr0083318,FBtr0306026,FBtr0306027;parent_type=mRNA" - - - -	14052	12,204,381 – 12,204,486	+	10	115	73.40	-0.55	0.64	0.622748
10218	dm3.chr3R	12,206,964 – 12,207,077	- - - intron="intron;ID=intron_FBgn0003513:8_FBgn0003513:7;Name=ss-in;Parent=FBtr0083318,FBtr0306026,FBtr0306027;parent_type=mRNA" - - - -	14053	12,206,964 – 12,207,077	+	10	118	73.65	-1.90	0.34	0.530479
10219	dm3.chr3R	12,208,776 – 12,208,880	- - - intron="intron;ID=intron_FBgn0003513:8_FBgn0003513:7;Name=ss-in;Parent=FBtr0083318,FBtr0306026,FBtr0306027;parent_type=mRNA" - - - -	14054	12,208,776 – 12,208,880	-	11	111	78.55	-3.27	0.28	0.918771
10220	dm3.chr3R	12,223,987 – 12,224,083	- - - intron="intron;ID=intron_FBgn0003513:11_FBgn0003513:9;Name=ss-in;Parent=FBtr0083318,FBtr0306026;parent_type=mRNA" - - - -	14055	12,223,987 – 12,224,083	-	6	106	69.65	-2.40	0.26	0.616825
10221	dm3.chr3R	12,239,601 – 12,239,696	- - - - - - - -	14056	12,239,601 – 12,239,696	-	4	103	74.91	-1.33	0.69	0.678172
10222	dm3.chr3R	12,246,248 – 12,246,346	- - - - - - - -	14057	12,246,248 – 12,246,346	+	8	101	66.30	-1.11	0.50	0.887078
10223	dm3.chr3R	12,254,023 – 12,254,129	- - - - - - - -	14058	12,254,023 – 12,254,129	+	13	124	70.65	-1.28	0.44	0.780991
10224	dm3.chr3R	12,257,657 – 12,257,762	FBnoncoding="tRNA;ID=FBtr0083285;Name=tRNA:CR31282-RA;Parent=FBgn0051282;Alias=CR31282-RA;Dbxref=FlyBase_Annotation_IDs:CR31282-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna14" - intron="intron;ID=intron_FBgn0051279:3_FBgn0051279:4;Name=CG31279-in;Parent=FBtr0301433;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAJJ01000411.1/14125-14198\|1.1e-25" - - "mirBase_v16=hsa-mir-3676\|4.5e-16"	14059	12,257,657 – 12,257,762	+	13	114	72.51	-0.50	0.65	0.865234
10224	dm3.chr3R	12,257,657 – 12,257,762		14060	12,257,657 – 12,257,762	-	13	114	72.51	-2.21	0.68	0.999360
10225	dm3.chr3R	12,263,492 – 12,263,550	- - - - - - - -	14061	12,263,492 – 12,263,550	+	10	68	66.30	-0.51	0.64	0.935782
10226	dm3.chr3R	12,272,965 – 12,273,105	- - - intron="intron;ID=intron_FBgn0044826:3_FBgn0044826:2;Name=Pak3-in;Parent=FBtr0083312;parent_type=mRNA" - - - -	14062	12,272,965 – 12,273,105	+	5	142	92.20	-1.94	0.78	0.572218
10227	dm3.chr3R	12,275,026 – 12,275,179	- - - intron="intron;ID=intron_FBgn0044826:3_FBgn0044826:2;Name=Pak3-in;Parent=FBtr0083312;parent_type=mRNA" - - - -	14063	12,275,026 – 12,275,179	+	5	153	76.00	-3.00	0.36	0.940458
10227	dm3.chr3R	12,275,026 – 12,275,179		14064	12,275,026 – 12,275,179	-	5	153	76.00	-3.39	0.44	0.995235
10228	dm3.chr3R	12,279,559 – 12,279,640	- - - - - - - -	14065	12,279,559 – 12,279,640	-	6	88	71.44	-1.74	0.50	0.914341
10229	dm3.chr3R	12,293,773 – 12,293,869	- - CDS="CDS;ID=CDS_FBgn0250754:4_92;Name=CG42232-cds;Parent=FBtr0290134;parent_type=mRNA" - - - - -	14066	12,293,773 – 12,293,869	+	10	104	69.12	-1.32	0.38	0.573826
10230	dm3.chr3R	12,297,684 – 12,297,835	- - - - - - - -	14067	12,297,684 – 12,297,835	-	7	152	71.25	-0.90	0.56	0.592775
10231	dm3.chr3R	12,320,382 – 12,320,472	- - - intron="intron;ID=intron_FBgn0038439:12_FBgn0038439:11;Name=Cad89D-in;Parent=FBtr0301702;parent_type=mRNA" - - - -	14068	12,320,382 – 12,320,472	-	8	104	62.67	-1.72	0.30	0.778666
10232	dm3.chr3R	12,327,511 – 12,327,567	- - - - - - - -	14069	12,327,511 – 12,327,567	-	6	64	83.30	-3.10	0.87	0.997946
10233	dm3.chr3R	12,328,368 – 12,328,455	- - - - - - - -	14070	12,328,368 – 12,328,455	-	5	87	81.02	-1.78	0.65	0.692759
10234	dm3.chr3R	12,329,055 – 12,329,159	- - - intron="intron;ID=intron_FBgn0259244:1_FBgn0259244:2;Name=CG42342-in;Parent=FBtr0299894,FBtr0299895,FBtr0299896,FBtr0299897,FBtr0301062,FBtr0303650,FBtr0303651,FBtr0305004,FBtr0305005,FBtr0305006;parent_type=mRNA" - - - -	14071	12,329,055 – 12,329,159	-	5	106	78.60	-2.16	0.49	0.573946
10235	dm3.chr3R	12,332,833 – 12,332,985	- - - intron="intron;ID=intron_FBgn0259244:1_FBgn0259244:2;Name=CG42342-in;Parent=FBtr0299894,FBtr0299895,FBtr0299896,FBtr0299897,FBtr0301062,FBtr0303650,FBtr0303651,FBtr0305004,FBtr0305005,FBtr0305006;parent_type=mRNA" - - - -	14072	12,332,833 – 12,332,945	+	5	112	71.48	-1.52	0.47	0.608753
10235	dm3.chr3R	12,332,833 – 12,332,985		14073	12,332,865 – 12,332,985	+	5	120	72.53	-1.96	0.54	0.937023
10236	dm3.chr3R	12,363,300 – 12,363,393	- - - intron="intron;ID=intron_FBgn0259244:2_FBgn0259244:3;Name=CG42342-in;Parent=FBtr0299894,FBtr0299895,FBtr0299896,FBtr0299897,FBtr0301062,FBtr0303650,FBtr0303651,FBtr0305004,FBtr0305005,FBtr0305006;parent_type=mRNA" - - - -	14074	12,363,300 – 12,363,393	+	12	108	72.82	-1.35	0.71	0.976642
10236	dm3.chr3R	12,363,300 – 12,363,393		14075	12,363,300 – 12,363,393	-	12	108	72.82	-0.92	0.57	0.670750
10237	dm3.chr3R	12,364,205 – 12,364,310	- - - intron="intron;ID=intron_FBgn0259244:2_FBgn0259244:3;Name=CG42342-in;Parent=FBtr0299894,FBtr0299895,FBtr0299896,FBtr0299897,FBtr0301062,FBtr0303650,FBtr0303651,FBtr0305004,FBtr0305005,FBtr0305006;parent_type=mRNA" - - - -	14076	12,364,205 – 12,364,310	+	6	114	70.33	-0.71	0.60	0.500000
10238	dm3.chr3R	12,366,165 – 12,366,222	- - - intron="intron;ID=intron_FBgn0259244:2_FBgn0259244:3;Name=CG42342-in;Parent=FBtr0299894,FBtr0299895,FBtr0299896,FBtr0299897,FBtr0301062,FBtr0303650,FBtr0303651,FBtr0305004,FBtr0305005,FBtr0305006;parent_type=mRNA" - - - -	14077	12,366,165 – 12,366,222	-	6	66	73.68	-1.34	0.54	0.628890
10239	dm3.chr3R	12,375,637 – 12,375,745	- - - intron="intron;ID=intron_FBgn0259244:2_FBgn0259244:3;Name=CG42342-in;Parent=FBtr0299894,FBtr0299895,FBtr0299896,FBtr0299897,FBtr0301062,FBtr0303650,FBtr0303651,FBtr0305004,FBtr0305005,FBtr0305006;parent_type=mRNA" - - - -	14078	12,375,637 – 12,375,733	+	8	113	81.53	-2.30	0.91	0.993727
10239	dm3.chr3R	12,375,637 – 12,375,745		14079	12,375,643 – 12,375,745	+	8	115	86.80	-2.55	0.91	0.993206
10240	dm3.chr3R	12,383,001 – 12,383,066	- - - intron="intron;ID=intron_FBgn0259244:9_FBgn0259244:10;Name=CG42342-in;Parent=FBtr0299894,FBtr0299896,FBtr0299897,FBtr0303650,FBtr0303651,FBtr0305004,FBtr0305005,FBtr0305006;parent_type=mRNA" - - - -	14080	12,383,001 – 12,383,066	+	9	77	66.71	-0.97	0.50	0.874723
10241	dm3.chr3R	12,413,000 – 12,413,051	- - - - - - - -	14081	12,413,000 – 12,413,051	-	6	53	79.35	-1.94	0.72	0.965713
10242	dm3.chr3R	12,419,370 – 12,419,516	- - - - - - - -	14082	12,419,370 – 12,419,516	-	4	148	72.77	-2.47	0.59	0.990062
10243	dm3.chr3R	12,423,428 – 12,423,520	- - - intron="intron;ID=intron_FBgn0027562:2_FBgn0027562:1;Name=CG10345-in;Parent=FBtr0083360;parent_type=mRNA" - - - -	14083	12,423,428 – 12,423,520	-	13	103	58.53	-0.89	0.36	0.816891
10244	dm3.chr3R	12,427,421 – 12,427,514	- - - intron="intron;ID=intron_FBgn0027562:7_FBgn0027562:6;Name=CG10345-in;Parent=FBtr0083360;parent_type=mRNA" - - - -	14084	12,427,421 – 12,427,514	+	7	94	78.65	-1.09	0.62	0.500000
10245	dm3.chr3R	12,429,921 – 12,430,011	- - - intron="intron;ID=intron_FBgn0027562:7_FBgn0027562:6;Name=CG10345-in;Parent=FBtr0083360;parent_type=mRNA" - - - -	14085	12,429,921 – 12,430,011	-	7	111	61.31	-1.07	0.41	0.563474
10246	dm3.chr3R	12,431,035 – 12,431,133	- - - - - - - -	14086	12,431,035 – 12,431,133	-	7	114	73.55	-1.60	0.52	0.852363
10247	dm3.chr3R	12,458,623 – 12,458,724	- - - intron="intron;ID=intron_FBgn0000634:8_FBgn0000634:9;Name=Fas1-in;Parent=FBtr0083334,FBtr0083333;parent_type=mRNA" - - - -	14087	12,458,623 – 12,458,724	+	6	113	85.90	-2.11	0.65	0.677137
10248	dm3.chr3R	12,463,161 – 12,463,253	- - - intron="intron;ID=intron_FBgn0000634:17_FBgn0000634:19;Name=Fas1-in;Parent=FBtr0300036,FBtr0300037;parent_type=mRNA" - - - -	14088	12,463,161 – 12,463,253	+	6	98	68.46	-1.20	0.44	0.552241
10249	dm3.chr3R	12,486,023 – 12,486,141	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14089	12,486,023 – 12,486,141	+	12	120	95.87	-1.07	0.96	0.621086
10250	dm3.chr3R	12,488,092 – 12,488,149	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14090	12,488,092 – 12,488,149	+	6	61	71.27	-1.18	0.57	0.800294
10251	dm3.chr3R	12,490,787 – 12,490,889	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14091	12,490,787 – 12,490,889	+	12	116	71.67	-2.38	0.36	0.959893
10251	dm3.chr3R	12,490,787 – 12,490,889		14092	12,490,787 – 12,490,889	-	12	116	71.67	-2.92	0.38	0.995553
10252	dm3.chr3R	12,491,565 – 12,491,655	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14093	12,491,565 – 12,491,655	+	11	90	95.67	-3.50	0.67	0.962114
10253	dm3.chr3R	12,507,029 – 12,507,120	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14094	12,507,029 – 12,507,120	+	10	116	62.50	-1.32	0.36	0.724234
10254	dm3.chr3R	12,508,732 – 12,508,858	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14095	12,508,732 – 12,508,830	-	12	113	66.39	-2.56	0.30	0.969832
				14096	12,508,761 – 12,508,858	+	12	118	67.86	-1.96	0.30	0.688987
				14097	12,508,761 – 12,508,858	-	12	118	67.86	-2.32	0.24	0.663728
10255	dm3.chr3R	12,511,492 – 12,511,583	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14098	12,511,492 – 12,511,583	+	12	112	79.37	-2.20	0.51	0.904626
10255	dm3.chr3R	12,511,492 – 12,511,583		14099	12,511,492 – 12,511,583	-	12	112	79.37	-1.88	0.46	0.541787
10256	dm3.chr3R	12,512,985 – 12,513,103	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14100	12,512,985 – 12,513,087	+	12	113	77.74	-2.08	0.37	0.510635
				14101	12,512,985 – 12,513,087	-	12	113	77.74	-2.77	0.50	0.991929
				14102	12,513,010 – 12,513,103	-	11	108	87.22	-2.42	0.83	0.981179
10257	dm3.chr3R	12,519,542 – 12,519,634	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14103	12,519,542 – 12,519,634	+	11	108	76.80	-0.94	0.71	0.649306
10257	dm3.chr3R	12,519,542 – 12,519,634		14104	12,519,542 – 12,519,634	-	11	108	76.80	-1.28	0.63	0.721143
10258	dm3.chr3R	12,524,123 – 12,524,215	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14105	12,524,123 – 12,524,215	+	5	92	95.11	-1.50	0.94	0.798644
10259	dm3.chr3R	12,525,344 – 12,525,442	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14106	12,525,344 – 12,525,442	-	12	114	90.71	-2.49	0.93	0.990886
10260	dm3.chr3R	12,525,760 – 12,525,854	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14107	12,525,760 – 12,525,854	+	9	101	73.61	-0.49	0.69	0.556982
10261	dm3.chr3R	12,531,026 – 12,531,116	- - - intron="intron;ID=intron_CG10388:3_CG10388:4;Name=Ubx-in;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - -	14108	12,531,026 – 12,531,116	-	5	92	91.69	-1.90	0.82	0.739523
10262	dm3.chr3R	12,536,267 – 12,536,389	- - CDS="CDS;ID=CDS_CG10388:3_43;Name=Ubx-cds;Parent=FBtr0083347,FBtr0083349,FBtr0083350,FBtr0083351;parent_type=mRNA" - - - - -	14109	12,536,267 – 12,536,364	-	13	114	76.68	-0.68	0.73	0.637395
10262	dm3.chr3R	12,536,267 – 12,536,389		14110	12,536,298 – 12,536,389	-	13	112	65.61	-0.92	0.58	0.977261
10263	dm3.chr3R	12,548,047 – 12,548,164	- - - intron="intron;ID=intron_CG10388:2_CG10388:3;Name=Ubx-in;Parent=FBtr0083347,FBtr0083351;parent_type=mRNA" - - - -	14111	12,548,047 – 12,548,164	+	8	120	75.24	-1.53	0.54	0.868494
10263	dm3.chr3R	12,548,047 – 12,548,164		14112	12,548,047 – 12,548,164	-	8	120	75.24	-1.48	0.45	0.533394
10264	dm3.chr3R	12,548,448 – 12,548,545	- - - intron="intron;ID=intron_CG10388:2_CG10388:3;Name=Ubx-in;Parent=FBtr0083347,FBtr0083351;parent_type=mRNA" - - - -	14113	12,548,448 – 12,548,545	-	12	115	85.63	-2.25	0.55	0.541872
10265	dm3.chr3R	12,554,800 – 12,554,903	- - - intron="intron;ID=intron_CG10388:1_CG10388:2;Name=Ubx-in;Parent=FBtr0083347;parent_type=mRNA" - - - -	14114	12,554,800 – 12,554,903	+	7	115	81.00	-1.79	0.57	0.643691
10265	dm3.chr3R	12,554,800 – 12,554,903		14115	12,554,800 – 12,554,903	-	7	115	81.00	-1.62	0.65	0.745279
10266	dm3.chr3R	12,566,774 – 12,566,872	- - - - - - - -	14116	12,566,774 – 12,566,872	+	8	111	52.70	-1.53	0.19	0.544530
10267	dm3.chr3R	12,574,396 – 12,574,489	FBnoncoding="ncRNA;ID=FBtr0083342;Name=bxd-RA;Parent=FBgn0020556;Dbxref=FlyBase_Annotation_IDs:CR31273-RA,REFSEQ:NR_002034;score_text=Weakly" - - - - "Noncode_2.0=n4990_u4393_U31961_bxd\|1.2e-46" "unique_Noncode_2.0=u4393_bxd\|1.1e-46" -	14117	12,574,396 – 12,574,489	+	11	110	60.79	-0.88	0.43	0.833554
10268	dm3.chr3R	12,576,538 – 12,576,637	FBnoncoding="ncRNA;ID=FBtr0083342;Name=bxd-RA;Parent=FBgn0020556;Dbxref=FlyBase_Annotation_IDs:CR31273-RA,REFSEQ:NR_002034;score_text=Weakly" - - - - "Noncode_2.0=n4992_u4393_U31961_bxd\|3.4e-50" "unique_Noncode_2.0=u4393_bxd\|3.0e-50" -	14118	12,576,538 – 12,576,637	-	7	109	60.85	-1.73	0.26	0.682689
10269	dm3.chr3R	12,590,935 – 12,591,040	- - - - - "Noncode_2.0=n4990_u4393_U31961_bxd\|9.7e-54" "unique_Noncode_2.0=u4393_bxd\|8.4e-54" -	14119	12,590,935 – 12,591,040	-	12	119	79.91	-1.08	0.77	0.743534
10270	dm3.chr3R	12,596,817 – 12,596,915	- - - - - "Noncode_2.0=n4990_u4393_U31961_bxd\|1.3e-49" "unique_Noncode_2.0=u4393_bxd\|1.2e-49" -	14120	12,596,817 – 12,596,915	+	12	117	87.20	-2.74	0.66	0.956360
10271	dm3.chr3R	12,604,622 – 12,604,682	- - - - - - - -	14121	12,604,622 – 12,604,682	+	6	64	82.07	-1.52	0.67	0.551246
10272	dm3.chr3R	12,610,963 – 12,611,056	- - - - - - - -	14122	12,610,963 – 12,611,056	-	12	116	80.69	-1.35	0.73	0.815797
10273	dm3.chr3R	12,621,903 – 12,621,954	- - - - - - - -	14123	12,621,903 – 12,621,954	+	4	51	92.81	-1.16	1.04	0.934925
10274	dm3.chr3R	12,625,855 – 12,625,949	- - - - - - - -	14124	12,625,855 – 12,625,949	+	10	100	87.04	-1.52	0.89	0.906219
10275	dm3.chr3R	12,642,440 – 12,642,490	- - - intron="intron;ID=intron_FBgn0000014:4_FBgn0000014:3;Name=abd-A-in;Parent=FBtr0083388,FBtr0083387,FBtr0300485,FBtr0306337;parent_type=mRNA" - - - -	14125	12,642,440 – 12,642,490	+	6	60	67.95	-1.72	0.37	0.559406
10275	dm3.chr3R	12,642,440 – 12,642,490		14126	12,642,440 – 12,642,490	-	6	60	67.95	-2.90	0.27	0.920409
10276	dm3.chr3R	12,646,794 – 12,646,896	- - - intron="intron;ID=intron_FBgn0000014:4_FBgn0000014:3;Name=abd-A-in;Parent=FBtr0083388,FBtr0083387,FBtr0300485,FBtr0306337;parent_type=mRNA" - - - -	14127	12,646,794 – 12,646,896	-	6	104	75.78	-1.54	0.55	0.773642
10277	dm3.chr3R	12,647,421 – 12,647,517	- - - intron="intron;ID=intron_FBgn0000014:4_FBgn0000014:3;Name=abd-A-in;Parent=FBtr0083388,FBtr0083387,FBtr0300485,FBtr0306337;parent_type=mRNA" - - - -	14128	12,647,421 – 12,647,517	+	11	112	75.89	-1.79	0.42	0.630078
10278	dm3.chr3R	12,648,469 – 12,648,601	- - - intron="intron;ID=intron_FBgn0000014:5_FBgn0000014:4;Name=abd-A-in;Parent=FBtr0083388,FBtr0083387,FBtr0300485,FBtr0306337;parent_type=mRNA" - - - -	14129	12,648,469 – 12,648,562	-	7	100	73.28	-1.93	0.65	0.987887
				14130	12,648,489 – 12,648,601	+	6	120	79.04	-1.44	0.71	0.813512
				14131	12,648,489 – 12,648,601	-	6	120	79.04	-1.70	0.74	0.936335
10279	dm3.chr3R	12,653,194 – 12,653,288	- - - - - - - -	14132	12,653,194 – 12,653,288	+	5	112	73.32	-1.23	0.68	0.649495
10280	dm3.chr3R	12,655,467 – 12,655,567	- - - - - - - -	14133	12,655,467 – 12,655,567	+	11	109	84.07	-2.83	0.58	0.979289
10280	dm3.chr3R	12,655,467 – 12,655,567	- - - - - - - -	14134	12,655,467 – 12,655,567	-	11	109	84.07	-3.50	0.71	0.998671
10281	dm3.chr3R	12,660,258 – 12,660,371	FBnoncoding="ncRNA;ID=FBtr0306340;Name=msa-RC;Parent=FBgn0262906;Alias=CR43261-RC;Dbxref=FlyBase_Annotation_IDs:CR43261-RC;score_text=Weakly" - - - - - - -	14135	12,660,258 – 12,660,371	-	12	120	96.84	-2.26	0.83	0.809217
10282	dm3.chr3R	12,667,849 – 12,667,946	FBnoncoding="ncRNA;ID=FBtr0306340;Name=msa-RC;Parent=FBgn0262906;Alias=CR43261-RC;Dbxref=FlyBase_Annotation_IDs:CR43261-RC;score_text=Weakly" - - - - - - -	14136	12,667,849 – 12,667,946	+	11	99	82.90	-2.52	0.57	0.938531
10283	dm3.chr3R	12,677,747 – 12,677,849	FBnoncoding="ncRNA;ID=FBtr0083362;Name=iab-4-RA;Parent=FBgn0020546;Alias=CR31271-RA;Dbxref=FlyBase_Annotation_IDs:CR31271-RA,REFSEQ:NR_002037;score_text=Weakly" - - - - "Noncode_2.0=n4988_u4391_U31961_mRNAlike\|5.8e-52" "unique_Noncode_2.0=u4391_mRNAlike\|5.0e-52" -	14137	12,677,747 – 12,677,849	-	12	115	69.12	-1.38	0.36	0.589399
10284	dm3.chr3R	12,681,987 – 12,682,089	FBnoncoding="pre_miRNA;ID=FBtr0304422;Name=mir-iab-8-RM;Parent=FBgn0262290;Alias=CR42997-RM;Dbxref=FlyBase_Annotation_IDs:CR42997-RM,miRBase:MI0005805" - - - "Rfam_10.0=RF00725;mir-iab-4;AAPU01010953.1/219687-219770\|7.0e-30" "Noncode_2.0=n4988_u4391_U31961_mRNAlike\|5.8e-52" "unique_Noncode_2.0=u4391_mRNAlike\|5.0e-52" "mirBase_v16=dsi-mir-iab-4-as\|3.8e-41"	14138	12,681,987 – 12,682,089	+	15	114	85.08	-3.45	0.80	0.998753
10284	dm3.chr3R	12,681,987 – 12,682,089		14139	12,681,987 – 12,682,089	-	15	114	85.08	-4.20	0.80	0.999470
10285	dm3.chr3R	12,695,121 – 12,695,213	- - - - - - - -	14140	12,695,121 – 12,695,213	-	8	99	59.30	-1.77	0.20	0.547486
10286	dm3.chr3R	12,697,274 – 12,697,376	- - - - - - - -	14141	12,697,274 – 12,697,376	+	12	121	87.49	-1.25	0.89	0.752161
10287	dm3.chr3R	12,697,947 – 12,698,038	- - - - - - - -	14142	12,697,947 – 12,698,038	+	8	106	62.70	-1.77	0.33	0.917172
10287	dm3.chr3R	12,697,947 – 12,698,038	- - - - - - - -	14143	12,697,947 – 12,698,038	-	8	106	62.70	-2.28	0.29	0.965810
10288	dm3.chr3R	12,708,505 – 12,708,655	- - - - - - - -	14144	12,708,505 – 12,708,612	+	6	117	76.44	-1.95	0.51	0.819265
				14145	12,708,505 – 12,708,612	-	6	117	76.44	-2.75	0.57	0.993728
				14146	12,708,537 – 12,708,645	+	7	114	71.60	-2.31	0.56	0.993046
				14147	12,708,537 – 12,708,645	-	7	114	71.60	-3.22	0.42	0.997046
				14148	12,708,546 – 12,708,655	+	7	115	73.84	-1.27	0.59	0.741934
				14149	12,708,546 – 12,708,655	-	7	115	73.84	-2.12	0.42	0.820373
10289	dm3.chr3R	12,710,677 – 12,710,776	- - - - - - - -	14150	12,710,677 – 12,710,776	-	9	118	64.25	-0.90	0.48	0.854003
10290	dm3.chr3R	12,711,943 – 12,712,041	- - - - - - - -	14151	12,711,943 – 12,712,041	-	5	98	90.71	-1.99	0.87	0.919006
10291	dm3.chr3R	12,728,569 – 12,728,661	- - - - - - - -	14152	12,728,569 – 12,728,661	+	5	100	68.43	-1.94	0.49	0.949184
10291	dm3.chr3R	12,728,569 – 12,728,661	- - - - - - - -	14153	12,728,569 – 12,728,661	-	5	100	68.43	-1.32	0.48	0.601833
10292	dm3.chr3R	12,729,121 – 12,729,223	- - - - - - - -	14154	12,729,121 – 12,729,223	-	11	119	65.27	-1.52	0.44	0.952826
10293	dm3.chr3R	12,758,832 – 12,758,946	- - - - - - - -	14155	12,758,832 – 12,758,946	+	13	131	92.68	-2.25	0.84	0.935835
10294	dm3.chr3R	12,762,986 – 12,763,121	- - - intron="intron;ID=intron_CG11648:2_CG11648:3;Name=Abd-B-in;Parent=FBtr0083381,FBtr0083382,FBtr0083383,FBtr0083385;parent_type=mRNA" - - - -	14156	12,762,986 – 12,763,095	+	11	117	84.39	-2.37	0.61	0.917317
10294	dm3.chr3R	12,762,986 – 12,763,121		14157	12,763,025 – 12,763,121	-	12	120	88.07	-2.83	0.53	0.801993
10295	dm3.chr3R	12,774,865 – 12,774,955	- - - - - - - -	14158	12,774,865 – 12,774,955	+	5	107	88.55	-1.37	0.90	0.766240
10296	dm3.chr3R	12,777,962 – 12,778,056	- - - - - - - -	14159	12,777,962 – 12,778,056	+	3	94	98.58	-1.35	1.01	0.881733
10297	dm3.chr3R	12,786,163 – 12,786,253	- - - - - - - -	14160	12,786,163 – 12,786,253	+	9	100	71.56	-2.28	0.31	0.758800
10298	dm3.chr3R	12,794,495 – 12,794,581	- - - - - - - -	14161	12,794,495 – 12,794,581	-	5	86	95.34	-0.94	0.97	0.556638
10299	dm3.chr3R	12,838,834 – 12,838,927	- - - - - - - -	14162	12,838,834 – 12,838,927	+	6	95	80.47	-2.17	0.54	0.833294
10299	dm3.chr3R	12,838,834 – 12,838,927	- - - - - - - -	14163	12,838,834 – 12,838,927	-	6	95	80.47	-1.39	0.64	0.510055
10300	dm3.chr3R	12,839,748 – 12,839,852	- - - - - - - -	14164	12,839,748 – 12,839,852	+	10	104	70.09	-1.75	0.35	0.742170
10301	dm3.chr3R	12,841,721 – 12,841,827	- - - intron="intron;ID=intron_FBgn0004577:1_FBgn0004577:3;Name=Pxd-in;Parent=FBtr0089287;parent_type=mRNA" - - - -	14165	12,841,721 – 12,841,827	+	4	108	74.96	-1.76	0.67	0.875551
10301	dm3.chr3R	12,841,721 – 12,841,827		14166	12,841,721 – 12,841,827	-	4	108	74.96	-2.77	0.50	0.963849
10302	dm3.chr3R	12,875,337 – 12,875,452	- - - - - - - -	14167	12,875,337 – 12,875,452	+	6	116	64.84	-0.81	0.50	0.779668
10303	dm3.chr3R	12,876,474 – 12,876,624	- - - - - - - -	14168	12,876,474 – 12,876,624	+	6	167	81.34	-1.66	0.60	0.505890
10304	dm3.chr3R	12,880,031 – 12,880,220	- - - intron="intron;ID=intron_CG5201:1_CG5201:17;Name=Dad-in;Parent=FBtr0100160;parent_type=mRNA" - - - -	14169	12,880,031 – 12,880,220	-	5	198	92.52	-1.86	0.81	0.629413
10305	dm3.chr3R	12,882,521 – 12,882,639	- - - intron="intron;ID=intron_CG5201:9_CG5201:3;Name=Dad-in;Parent=FBtr0083394;parent_type=mRNA" - - - -	14170	12,882,521 – 12,882,639	+	5	120	92.67	-3.56	0.93	0.998001
10305	dm3.chr3R	12,882,521 – 12,882,639		14171	12,882,521 – 12,882,639	-	5	120	92.67	-2.92	0.88	0.990337
10306	dm3.chr3R	12,885,309 – 12,885,422	- - - intron="intron;ID=intron_CG5201:3_CG5201:4;Name=Dad-in;Parent=FBtr0083393,FBtr0083394,FBtr0100160;parent_type=mRNA" - - - -	14172	12,885,309 – 12,885,422	-	5	119	58.04	-0.65	0.54	0.850430
10307	dm3.chr3R	12,886,656 – 12,886,764	- - - intron="intron;ID=intron_CG5201:3_CG5201:4;Name=Dad-in;Parent=FBtr0083393,FBtr0083394,FBtr0100160;parent_type=mRNA" - - - -	14173	12,886,656 – 12,886,764	-	5	112	89.69	-2.20	0.66	0.500000
10308	dm3.chr3R	12,888,011 – 12,888,145	- - - intron="intron;ID=intron_CG5201:3_CG5201:4;Name=Dad-in;Parent=FBtr0083393,FBtr0083394,FBtr0100160;parent_type=mRNA" - - - -	14174	12,888,011 – 12,888,105	+	6	120	78.70	-2.09	0.55	0.753280
10308	dm3.chr3R	12,888,011 – 12,888,145		14175	12,888,044 – 12,888,145	+	6	119	81.00	-1.72	0.68	0.756472
10309	dm3.chr3R	12,888,733 – 12,888,869	- - - intron="intron;ID=intron_CG5201:3_CG5201:4;Name=Dad-in;Parent=FBtr0083393,FBtr0083394,FBtr0100160;parent_type=mRNA" - - - -	14176	12,888,733 – 12,888,829	+	5	105	80.34	-1.58	0.70	0.742238
				14177	12,888,733 – 12,888,829	-	5	105	80.34	-1.56	0.65	0.576372
				14178	12,888,749 – 12,888,869	+	6	120	84.06	-1.70	0.73	0.791738
10310	dm3.chr3R	12,892,941 – 12,893,032	- - - intron="intron;ID=intron_CG5201:5_CG5201:6;Name=Dad-in;Parent=FBtr0083393,FBtr0083394,FBtr0100160;parent_type=mRNA" - - - -	14179	12,892,941 – 12,893,032	+	4	91	91.18	-1.57	0.86	0.645338
10311	dm3.chr3R	12,895,895 – 12,896,026	- - - - - - - -	14180	12,895,895 – 12,895,997	+	8	109	67.19	-1.18	0.45	0.822889
10311	dm3.chr3R	12,895,895 – 12,896,026	- - - - - - - -	14181	12,895,925 – 12,896,026	+	10	113	57.67	-1.25	0.37	0.954618
10312	dm3.chr3R	12,930,867 – 12,930,982	- - CDS="CDS;ID=CDS_FBgn0014141:13_92;Name=cher-cds;Parent=FBtr0303364;parent_type=mRNA" - - - - -	14182	12,930,867 – 12,930,982	-	14	115	81.55	-1.67	0.52	0.727173
10313	dm3.chr3R	12,951,419 – 12,951,492	- - - - - - - -	14183	12,951,419 – 12,951,492	-	8	73	66.54	-1.08	0.39	0.565336
10314	dm3.chr3R	12,977,684 – 12,977,749	- - CDS="CDS;ID=CDS_FBgn0038491:1_70;Name=CG5292-cds;Parent=FBtr0083410;parent_type=mRNA" - - - - -	14184	12,977,684 – 12,977,749	+	14	65	78.34	-0.63	0.63	0.500000
10315	dm3.chr3R	12,978,408 – 12,978,503	- - - - - - - -	14185	12,978,408 – 12,978,503	-	5	95	67.58	-1.27	0.43	0.610392
10316	dm3.chr3R	12,995,632 – 12,995,728	- - - - - - - -	14186	12,995,632 – 12,995,728	+	10	111	74.81	-1.41	0.53	0.715407
10317	dm3.chr3R	13,003,158 – 13,003,261	- - - - - - - -	14187	13,003,158 – 13,003,261	-	9	113	59.66	-0.85	0.36	0.578924
10318	dm3.chr3R	13,022,215 – 13,022,331	- - - - - - - -	14188	13,022,215 – 13,022,331	-	5	116	88.61	-1.53	0.89	0.824757
10319	dm3.chr3R	13,022,604 – 13,022,657	- - - - - - - -	14189	13,022,604 – 13,022,657	+	9	69	71.81	-2.74	0.27	0.740762
10320	dm3.chr3R	13,036,158 – 13,036,252	- - - - - - - -	14190	13,036,158 – 13,036,252	+	4	94	84.26	-1.86	0.67	0.506656
10321	dm3.chr3R	13,046,134 – 13,046,246	- - - - - - - -	14191	13,046,134 – 13,046,246	+	6	112	88.45	-1.84	0.75	0.697597
10322	dm3.chr3R	13,050,079 – 13,050,136	- - - - - - - -	14192	13,050,079 – 13,050,136	-	5	57	93.51	-1.16	0.93	0.585267
10323	dm3.chr3R	13,052,829 – 13,052,923	- - - - - - - -	14193	13,052,829 – 13,052,923	-	4	101	92.82	-2.10	0.94	0.965676
10324	dm3.chr3R	13,061,643 – 13,061,755	- - - intron="intron;ID=intron_FBgn0038494:5_FBgn0038494:1;Name=beat-IIb-in;Parent=FBtr0300610;parent_type=mRNA" - - - -	14194	13,061,643 – 13,061,755	+	12	120	95.70	-1.83	0.89	0.807734
10325	dm3.chr3R	13,063,194 – 13,063,261	- - - intron="intron;ID=intron_FBgn0038494:5_FBgn0038494:1;Name=beat-IIb-in;Parent=FBtr0300610;parent_type=mRNA" - - - -	14195	13,063,194 – 13,063,261	+	12	67	98.71	-1.22	1.00	0.812165
10325	dm3.chr3R	13,063,194 – 13,063,261		14196	13,063,194 – 13,063,261	-	12	67	98.71	-1.68	1.00	0.939509
10326	dm3.chr3R	13,072,015 – 13,072,129	- - - intron="intron;ID=intron_FBgn0038494:8_FBgn0038494:7;Name=beat-IIb-in;Parent=FBtr0083411,FBtr0300610;parent_type=mRNA" - - - -	14197	13,072,015 – 13,072,129	-	8	117	74.30	-1.88	0.39	0.545191
10327	dm3.chr3R	13,081,466 – 13,081,577	- - - - - - - -	14198	13,081,466 – 13,081,577	-	4	111	89.79	-1.81	0.92	0.932844
10328	dm3.chr3R	13,086,296 – 13,086,396	- - - - - - - -	14199	13,086,296 – 13,086,396	-	6	102	86.56	-2.16	0.66	0.766230
10328	dm3.chr3R	13,086,296 – 13,086,396	- - - - - - - -	14200	13,086,297 – 13,086,396	-	6	101	86.42	-2.02	0.66	0.665948
10329	dm3.chr3R	13,092,530 – 13,092,665	- - - - - - - -	14201	13,092,530 – 13,092,625	-	3	100	80.99	-2.25	0.57	0.509159
10329	dm3.chr3R	13,092,530 – 13,092,665	- - - - - - - -	14202	13,092,551 – 13,092,665	-	4	114	69.95	-2.18	0.56	0.978881
10330	dm3.chr3R	13,093,617 – 13,093,674	- - - - - - - -	14203	13,093,617 – 13,093,674	-	5	57	91.49	-0.90	1.00	0.772121
10331	dm3.chr3R	13,101,015 – 13,101,105	- - - - - - - -	14204	13,101,015 – 13,101,105	+	6	96	72.24	-2.30	0.45	0.968803
10332	dm3.chr3R	13,106,961 – 13,107,060	- - - - - - - -	14205	13,106,961 – 13,107,060	-	5	106	69.27	-1.77	0.42	0.737269
10333	dm3.chr3R	13,116,488 – 13,116,547	- - - - - - - -	14206	13,116,488 – 13,116,547	+	6	63	85.75	-1.65	0.78	0.763526
10333	dm3.chr3R	13,116,488 – 13,116,547	- - - - - - - -	14207	13,116,488 – 13,116,547	-	6	63	85.75	-1.21	0.82	0.543458
10334	dm3.chr3R	13,118,204 – 13,118,313	- - - - - - - -	14208	13,118,204 – 13,118,313	+	12	116	67.40	-2.57	0.19	0.780820
10334	dm3.chr3R	13,118,204 – 13,118,313	- - - - - - - -	14209	13,118,204 – 13,118,313	-	12	116	67.40	-2.66	0.21	0.893338
10335	dm3.chr3R	13,139,892 – 13,139,953	- - - - - - - -	14210	13,139,892 – 13,139,953	+	5	61	67.87	-0.94	0.49	0.544959
10335	dm3.chr3R	13,139,892 – 13,139,953	- - - - - - - -	14211	13,139,892 – 13,139,953	-	5	61	67.87	-0.76	0.70	0.905890
10336	dm3.chr3R	13,147,702 – 13,147,801	- - - intron="intron;ID=intron_CG14334:5_CG14334:6;Name=beat-IIa-in;Parent=FBtr0083453;parent_type=mRNA" - - - -	14212	13,147,702 – 13,147,801	-	8	107	80.17	-1.93	0.60	0.840403
10337	dm3.chr3R	13,150,841 – 13,151,014	- - - intron="intron;ID=intron_CG14334:5_CG14334:6;Name=beat-IIa-in;Parent=FBtr0083453;parent_type=mRNA" - - - -	14213	13,150,841 – 13,150,937	+	6	103	75.25	-1.97	0.73	0.988912
				14214	13,150,863 – 13,150,974	+	9	117	76.79	-1.13	0.76	0.914348
				14215	13,150,898 – 13,151,014	+	12	120	92.29	-0.95	0.97	0.713310
10338	dm3.chr3R	13,163,957 – 13,164,059	- - - intron="intron;ID=intron_CG14334:2_CG14334:3;Name=beat-IIa-in;Parent=FBtr0083453;parent_type=mRNA" - - - -	14216	13,163,957 – 13,164,059	+	5	107	81.66	-1.89	0.62	0.711346
10338	dm3.chr3R	13,163,957 – 13,164,059		14217	13,163,957 – 13,164,059	-	5	107	81.66	-1.78	0.61	0.581345
10339	dm3.chr3R	13,164,621 – 13,164,731	- - - intron="intron;ID=intron_CG14334:2_CG14334:3;Name=beat-IIa-in;Parent=FBtr0083453;parent_type=mRNA" - - - -	14218	13,164,621 – 13,164,731	-	10	113	63.01	-1.06	0.44	0.903730
10340	dm3.chr3R	13,168,887 – 13,168,998	- - - intron="intron;ID=intron_CG14334:2_CG14334:3;Name=beat-IIa-in;Parent=FBtr0083453;parent_type=mRNA" - - - -	14219	13,168,887 – 13,168,998	+	7	116	69.19	-1.44	0.46	0.743574
10341	dm3.chr3R	13,169,470 – 13,169,575	- - - intron="intron;ID=intron_CG14334:2_CG14334:3;Name=beat-IIa-in;Parent=FBtr0083453;parent_type=mRNA" - - - -	14220	13,169,470 – 13,169,575	-	4	119	77.64	-1.85	0.54	0.570816
10342	dm3.chr3R	13,169,741 – 13,169,836	- - - intron="intron;ID=intron_CG14334:2_CG14334:3;Name=beat-IIa-in;Parent=FBtr0083453;parent_type=mRNA" - - - -	14221	13,169,741 – 13,169,836	+	7	98	80.69	-1.47	0.69	0.789840
10343	dm3.chr3R	13,179,126 – 13,179,224	- - - intron="intron;ID=intron_CG14334:1_CG14334:2;Name=beat-IIa-in;Parent=FBtr0083453;parent_type=mRNA" - - - -	14222	13,179,126 – 13,179,224	-	7	104	75.08	-1.08	0.58	0.602203
10344	dm3.chr3R	13,193,082 – 13,193,210	- - - - - - - -	14223	13,193,082 – 13,193,177	+	4	114	79.97	-1.86	0.60	0.500000
				14224	13,193,082 – 13,193,177	-	4	114	79.97	-3.22	0.66	0.994935
				14225	13,193,111 – 13,193,210	+	4	113	86.16	-2.16	0.69	0.698338
				14226	13,193,111 – 13,193,210	-	4	113	86.16	-3.47	0.69	0.992994
10345	dm3.chr3R	13,193,533 – 13,193,642	- - - - - - - -	14227	13,193,533 – 13,193,642	+	7	117	74.33	-1.50	0.46	0.544844
10346	dm3.chr3R	13,197,817 – 13,197,934	- - - - - - - -	14228	13,197,817 – 13,197,934	-	9	125	81.71	-2.30	0.54	0.906378
10347	dm3.chr3R	13,200,804 – 13,200,932	- - - - - - - -	14229	13,200,804 – 13,200,909	+	12	120	84.26	-2.72	0.43	0.721235
10347	dm3.chr3R	13,200,804 – 13,200,932	- - - - - - - -	14230	13,200,834 – 13,200,932	+	12	119	80.80	-2.55	0.39	0.688210
10348	dm3.chr3R	13,207,243 – 13,207,342	- - - intron="intron;ID=intron_FBgn0262871:2_FBgn0262871:3;Name=lute-in;Parent=FBtr0306210;parent_type=mRNA" - - - -	14231	13,207,243 – 13,207,342	+	8	102	66.48	-1.99	0.32	0.859296
10349	dm3.chr3R	13,209,207 – 13,209,314	- - - - - - - -	14232	13,209,207 – 13,209,314	-	6	111	70.90	-1.85	0.49	0.935389
10350	dm3.chr3R	13,211,553 – 13,211,638	- - - intron="intron;ID=intron_FBgn0262871:3_FBgn0262871:5;Name=lute-in;Parent=FBtr0306209,FBtr0306210;parent_type=mRNA" - - - -	14233	13,211,553 – 13,211,638	-	5	100	61.65	-1.48	0.39	0.782436
10351	dm3.chr3R	13,213,471 – 13,213,646	- - CDS="CDS;ID=CDS_FBgn0262871:7_274;Name=lute-cds;Parent=FBtr0306209,FBtr0306210;parent_type=mRNA" - - - - -	14234	13,213,471 – 13,213,591	-	15	120	81.83	-1.37	0.59	0.500000
10351	dm3.chr3R	13,213,471 – 13,213,646		14235	13,213,526 – 13,213,646	+	15	120	87.52	-2.13	0.66	0.834141
10352	dm3.chr3R	13,240,772 – 13,240,864	- - - - - - - -	14236	13,240,772 – 13,240,864	+	3	111	80.78	-2.02	0.84	0.955314
10352	dm3.chr3R	13,240,772 – 13,240,864	- - - - - - - -	14237	13,240,772 – 13,240,864	-	3	111	80.78	-1.88	0.79	0.886688
10353	dm3.chr3R	13,249,354 – 13,249,444	- - - - - - - -	14238	13,249,354 – 13,249,444	-	8	120	82.39	-2.00	0.64	0.733390
10354	dm3.chr3R	13,249,670 – 13,249,763	- - - - - - - -	14239	13,249,670 – 13,249,763	-	11	101	82.16	-1.72	0.66	0.846035
10355	dm3.chr3R	13,253,362 – 13,253,460	- - - intron="intron;ID=intron_CG5873:1_CG5873:2;Name=CG5873-in;Parent=FBtr0083442;parent_type=mRNA" - - - -	14240	13,253,362 – 13,253,460	+	8	113	77.82	-1.28	0.60	0.517729
10356	dm3.chr3R	13,254,641 – 13,254,760	- - - intron="intron;ID=intron_CG5873:1_CG5873:2;Name=CG5873-in;Parent=FBtr0083442;parent_type=mRNA" - - - -	14241	13,254,641 – 13,254,735	+	11	105	68.43	-1.68	0.33	0.646819
				14242	13,254,641 – 13,254,735	-	11	105	68.43	-2.21	0.56	0.998577
				14243	13,254,664 – 13,254,760	-	12	112	75.56	-2.02	0.53	0.956305
10357	dm3.chr3R	13,259,976 – 13,260,073	- - - intron="intron;ID=intron_CG5873:1_CG5873:2;Name=CG5873-in;Parent=FBtr0083442;parent_type=mRNA" - - - -	14244	13,259,976 – 13,260,073	+	6	97	71.28	-1.42	0.63	0.946714
10357	dm3.chr3R	13,259,976 – 13,260,073		14245	13,259,976 – 13,260,073	-	6	97	71.28	-0.92	0.66	0.806872
10358	dm3.chr3R	13,262,227 – 13,262,381	- - - intron="intron;ID=intron_CG5873:2_CG5873:3;Name=CG5873-in;Parent=FBtr0083442;parent_type=mRNA" - - - -	14246	13,262,227 – 13,262,381	+	6	167	78.86	-1.24	0.67	0.569041
10359	dm3.chr3R	13,266,641 – 13,266,793	- - CDS="CDS;ID=CDS_CG5873:3_30;Name=CG5873-cds;Parent=FBtr0083442;parent_type=mRNA" - - - - -	14247	13,266,641 – 13,266,793	+	8	156	68.74	-1.03	0.51	0.833373
10360	dm3.chr3R	13,284,257 – 13,284,347	- - - - - - - -	14248	13,284,257 – 13,284,347	-	12	112	81.94	-1.33	0.71	0.617109
10361	dm3.chr3R	13,296,673 – 13,296,831	- - - - - - - -	14249	13,296,673 – 13,296,765	-	9	95	70.78	-1.01	0.50	0.646060
10361	dm3.chr3R	13,296,673 – 13,296,831	- - - - - - - -	14250	13,296,720 – 13,296,831	-	10	117	80.05	-1.98	0.47	0.605177
10362	dm3.chr3R	13,333,516 – 13,333,611	- - - - - - - -	14251	13,333,516 – 13,333,611	-	9	112	73.17	-1.42	0.47	0.572458
10363	dm3.chr3R	13,342,218 – 13,342,370	- - - - - - - -	14252	13,342,218 – 13,342,370	+	6	154	52.35	-0.97	0.33	0.686224
10364	dm3.chr3R	13,344,205 – 13,344,307	- - - - - - - -	14253	13,344,205 – 13,344,307	-	10	107	66.25	-1.15	0.44	0.870670
10365	dm3.chr3R	13,346,245 – 13,346,363	- - - - - - - -	14254	13,346,245 – 13,346,337	-	4	99	68.54	-1.95	0.61	0.981397
10365	dm3.chr3R	13,346,245 – 13,346,363	- - - - - - - -	14255	13,346,271 – 13,346,363	-	5	94	57.08	-2.28	0.20	0.640521
10366	dm3.chr3R	13,382,035 – 13,382,126	- - - - - - - -	14256	13,382,035 – 13,382,126	+	7	97	74.27	-2.10	0.82	0.995376
10367	dm3.chr3R	13,393,058 – 13,393,148	- - CDS="CDS;ID=CDS_FBgn0085448:3_102;Name=Hmx-cds;Parent=FBtr0273220;parent_type=mRNA" - - - - -	14257	13,393,058 – 13,393,148	-	6	96	69.19	-2.57	0.38	0.961208
10368	dm3.chr3R	13,401,960 – 13,402,041	- - - - - - - -	14258	13,401,960 – 13,402,041	-	3	84	45.38	-1.03	0.40	0.871532
10369	dm3.chr3R	13,424,178 – 13,424,270	- - - - - - - -	14259	13,424,178 – 13,424,270	-	5	92	88.22	-2.79	0.84	0.989070
10370	dm3.chr3R	13,429,541 – 13,429,660	- - - - - - - -	14260	13,429,541 – 13,429,636	+	9	114	55.77	-1.11	0.37	0.909718
				14261	13,429,566 – 13,429,660	+	9	98	64.46	-1.36	0.34	0.763935
				14262	13,429,566 – 13,429,660	-	9	98	64.46	-1.18	0.43	0.924935
10371	dm3.chr3R	13,443,448 – 13,443,567	FBnoncoding="tRNA;ID=FBtr0083466;Name=tRNA:V3b:90BC-RA;Parent=FBgn0012002;Dbxref=FlyBase_Annotation_IDs:CR31572-RA;score_text=Weakly" tRNAscann="Val_chr3R_trna15" - - "Rfam_10.0=RF00005;tRNA;AC009461.5/117254-117326\|1.4e-34" - - -	14263	13,443,448 – 13,443,567	+	12	121	74.38	-1.01	0.81	0.976016
10371	dm3.chr3R	13,443,448 – 13,443,567		14264	13,443,448 – 13,443,567	-	12	121	74.38	-0.71	0.75	0.930454
10372	dm3.chr3R	13,445,461 – 13,445,556	FBnoncoding="tRNA;ID=FBtr0083468;Name=tRNA:CR31570-RA;Parent=FBgn0051570;Alias=CR31570-RA;Dbxref=FlyBase_Annotation_IDs:CR31570-RA;score_text=Weakly" tRNAscann="Ala_chr3R_trna16" - - "Rfam_10.0=RF00005;tRNA;AAPT01019392.1/11921-11993\|4.1e-31" - - -	14265	13,445,461 – 13,445,556	+	13	100	81.74	-1.06	0.95	0.931210
10372	dm3.chr3R	13,445,461 – 13,445,556		14266	13,445,461 – 13,445,556	-	13	100	81.74	-1.94	0.96	0.991310
10373	dm3.chr3R	13,445,865 – 13,445,950	FBnoncoding="tRNA;ID=FBtr0083499;Name=tRNA:A:90C-RA;Parent=FBgn0011840;Dbxref=FlyBase_Annotation_IDs:CR31574-RA;score_text=Weakly" tRNAscann="Ala_chr3R_trna56" - - "Rfam_10.0=RF00005;tRNA;AAPT01019392.1/11921-11993\|2.3e-32" - - -	14267	13,445,865 – 13,445,950	+	13	85	88.24	-0.80	0.94	0.682119
10373	dm3.chr3R	13,445,865 – 13,445,950		14268	13,445,865 – 13,445,950	-	13	85	88.24	-1.79	0.96	0.979574
10374	dm3.chr3R	13,450,287 – 13,450,397	FBnoncoding="tRNA;ID=FBtr0083497;Name=tRNA:T:90Ca-RA;Parent=FBgn0011993;Dbxref=FlyBase_Annotation_IDs:CR31589-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna55" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000411.1/14125-14198\|4.5e-25" - - "mirBase_v16=hsa-mir-3676\|4.8e-16"	14269	13,450,287 – 13,450,397	+	13	111	82.25	-1.29	0.89	0.946809
10375	dm3.chr3R	13,450,526 – 13,450,629	FBnoncoding="tRNA;ID=FBtr0083496;Name=tRNA:T:90Cb-RA;Parent=FBgn0011994;Dbxref=FlyBase_Annotation_IDs:CR31590-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna54" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000411.1/14125-14198\|1.1e-25" - - "mirBase_v16=hsa-mir-3676\|4.4e-16"	14270	13,450,526 – 13,450,629	+	13	110	82.94	-1.43	0.91	0.958467
10376	dm3.chr3R	13,454,808 – 13,454,902	FBnoncoding="tRNA;ID=FBtr0083495;Name=tRNA:V4:90C-RA;Parent=FBgn0051591;Dbxref=FlyBase_Annotation_IDs:CR31591-RA;score_text=Weakly" tRNAscann="Val_chr3R_trna53" - - "Rfam_10.0=RF00005;tRNA;AAPU01011049.1/77188-77260\|1.0e-31" - - -	14271	13,454,808 – 13,454,902	+	12	108	76.64	-1.04	0.86	0.939411
10376	dm3.chr3R	13,454,808 – 13,454,902		14272	13,454,808 – 13,454,902	-	12	108	76.64	-0.76	0.77	0.786867
10377	dm3.chr3R	13,457,391 – 13,457,465	FBnoncoding="tRNA;ID=FBtr0083472;Name=tRNA:CR31573-RA;Parent=FBgn0051573;Alias=CR31573-RA;Dbxref=FlyBase_Annotation_IDs:CR31573-RA;score_text=Weakly" tRNAscann="Pro_chr3R_trna19" - - "Rfam_10.0=RF00005;tRNA;BAAF04096440.1/6614-6678\|2.8e-25" - - -	14273	13,457,391 – 13,457,465	-	13	74	89.50	-1.86	0.88	0.953982
10378	dm3.chr3R	13,459,732 – 13,459,824	- - - - - - - -	14274	13,459,732 – 13,459,824	+	5	116	67.77	-1.45	0.68	0.977020
10379	dm3.chr3R	13,471,312 – 13,471,416	FBnoncoding="tRNA;ID=FBtr0083473;Name=tRNA:CR31578-RA;Parent=FBgn0051578;Alias=CR31578-RA;Dbxref=FlyBase_Annotation_IDs:CR31578-RA;score_text=Weakly" tRNAscann="Pro_chr3R_trna20" - - "Rfam_10.0=RF00005;tRNA;AAAB01017465.1/91-162\|2.7e-26" - - -	14275	13,471,312 – 13,471,416	+	12	106	73.25	-0.81	0.93	0.959142
10379	dm3.chr3R	13,471,312 – 13,471,416		14276	13,471,312 – 13,471,416	-	12	106	73.25	-2.15	0.94	0.996935
10380	dm3.chr3R	13,473,295 – 13,473,357	- - - - - - - -	14277	13,473,295 – 13,473,357	+	7	64	67.75	-0.31	0.72	0.823576
10381	dm3.chr3R	13,479,458 – 13,479,522	- - - intron="intron;ID=intron_FBgn0038532:1_FBgn0038532:2;Name=CG14322-in;Parent=FBtr0083476;parent_type=mRNA" - - - -	14278	13,479,458 – 13,479,522	-	4	64	93.18	-1.97	0.81	0.646471
10382	dm3.chr3R	13,484,100 – 13,484,179	FBnoncoding="tRNA;ID=FBtr0083491;Name=tRNA:CR31575-RA;Parent=FBgn0051575;Alias=CR31575-RA;Dbxref=FlyBase_Annotation_IDs:CR31575-RA;score_text=Weakly" tRNAscann="Ala_chr3R_trna49" - intron="intron;ID=intron_FBgn0038532:1_FBgn0038532:2;Name=CG14322-in;Parent=FBtr0083476;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPT01019392.1/11921-11993\|2.1e-32" - - -	14279	13,484,100 – 13,484,179	+	13	81	95.19	-1.55	0.96	0.893507
10382	dm3.chr3R	13,484,100 – 13,484,179		14280	13,484,100 – 13,484,179	-	13	81	95.19	-2.77	0.99	0.995987
10383	dm3.chr3R	13,484,686 – 13,484,811	- - - intron="intron;ID=intron_FBgn0038532:1_FBgn0038532:2;Name=CG14322-in;Parent=FBtr0083476;parent_type=mRNA" - - - -	14281	13,484,686 – 13,484,783	+	5	97	91.86	-2.53	0.81	0.946128
10383	dm3.chr3R	13,484,686 – 13,484,811		14282	13,484,721 – 13,484,811	+	9	108	66.46	-2.58	0.33	0.985393
10384	dm3.chr3R	13,489,571 – 13,489,662	- - CDS="CDS;ID=CDS_FBgn0038532:3_132;Name=CG14322-cds;Parent=FBtr0083476;parent_type=mRNA" - - - - -	14283	13,489,571 – 13,489,662	+	9	100	48.94	-1.04	0.31	0.820758
10385	dm3.chr3R	13,493,888 – 13,493,984	FBnoncoding="tRNA;ID=FBtr0083477;Name=tRNA:CR31576-RA;Parent=FBgn0051576;Alias=CR31576-RA;Dbxref=FlyBase_Annotation_IDs:CR31576-RA;score_text=Weakly" tRNAscann="Ala_chr3R_trna23" - intron="intron;ID=intron_FBgn0038532:4_FBgn0038532:5;Name=CG14322-in;Parent=FBtr0083476;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPT01019392.1/11921-11993\|2.7e-32" - - -	14284	13,493,888 – 13,493,984	+	13	111	82.71	-1.50	0.94	0.968454
10385	dm3.chr3R	13,493,888 – 13,493,984		14285	13,493,888 – 13,493,984	-	13	111	82.71	-1.32	0.80	0.858542
10386	dm3.chr3R	13,520,920 – 13,521,020	- - CDS="CDS;ID=CDS_FBgn0003013:5_2;Name=osa-cds;Parent=FBtr0301487;parent_type=mRNA" - - - - -	14286	13,520,920 – 13,521,020	-	8	116	68.46	-1.90	0.45	0.962507
10387	dm3.chr3R	13,528,409 – 13,528,621	- - - intron="intron;ID=intron_FBgn0003013:14_FBgn0003013:13;Name=osa-in;Parent=FBtr0301487,FBtr0089582,FBtr0089583,FBtr0089581;parent_type=mRNA" - - - -	14287	13,528,409 – 13,528,512	-	5	111	62.92	-1.46	0.38	0.745785
10387	dm3.chr3R	13,528,409 – 13,528,621		14288	13,528,512 – 13,528,621	+	5	114	82.56	-1.44	0.73	0.564924
10388	dm3.chr3R	13,539,479 – 13,539,626	- - - intron="intron;ID=intron_FBgn0003013:16_FBgn0003013:15;Name=osa-in;Parent=FBtr0301487,FBtr0089582,FBtr0089583,FBtr0089581;parent_type=mRNA" - - - -	14289	13,539,479 – 13,539,592	+	5	119	78.26	-1.51	0.67	0.734329
10388	dm3.chr3R	13,539,479 – 13,539,626		14290	13,539,516 – 13,539,626	+	4	116	90.69	-1.84	0.89	0.886549
10389	dm3.chr3R	13,541,925 – 13,542,020	- - CDS="CDS;ID=CDS_FBgn0003013:16_87;Name=osa-cds;Parent=FBtr0089583;parent_type=mRNA" - - - - -	14291	13,541,925 – 13,542,020	+	4	95	96.84	-1.65	0.99	0.933219
10390	dm3.chr3R	13,545,050 – 13,545,165	- - - - - - - -	14292	13,545,050 – 13,545,165	-	5	118	73.45	-1.41	0.59	0.814997
10391	dm3.chr3R	13,550,003 – 13,550,095	- - - - - - - -	14293	13,550,003 – 13,550,095	-	5	105	83.02	-1.76	0.78	0.888690
10392	dm3.chr3R	13,552,204 – 13,552,351	- - - intron="intron;ID=intron_CG7665:1_CG7665:18;Name=Fsh-in;Parent=FBtr0083510;parent_type=mRNA" - - - -	14294	13,552,204 – 13,552,313	-	5	119	77.44	-3.37	0.47	0.994518
10392	dm3.chr3R	13,552,204 – 13,552,351		14295	13,552,236 – 13,552,351	-	5	119	77.82	-3.31	0.59	0.997461
10393	dm3.chr3R	13,554,667 – 13,554,759	- - - intron="intron;ID=intron_CG7665:2_CG7665:3;Name=Fsh-in;Parent=FBtr0083509;parent_type=mRNA" - - - -	14296	13,554,667 – 13,554,759	+	6	117	65.87	-1.10	0.50	0.824997
10394	dm3.chr3R	13,561,292 – 13,561,385	- - - - - - - -	14297	13,561,292 – 13,561,385	-	9	120	80.13	-1.95	0.88	0.983350
10395	dm3.chr3R	13,564,784 – 13,564,888	- - - - - - - -	14298	13,564,784 – 13,564,888	+	4	108	76.39	-1.45	0.68	0.593297
10396	dm3.chr3R	13,573,148 – 13,573,219	- - - - - - - -	14299	13,573,148 – 13,573,219	+	7	85	70.65	-2.68	0.51	0.997567
10396	dm3.chr3R	13,573,148 – 13,573,219	- - - - - - - -	14300	13,573,148 – 13,573,219	-	7	85	70.65	-1.40	0.52	0.856075
10397	dm3.chr3R	13,573,281 – 13,573,341	- - - - - - - -	14301	13,573,281 – 13,573,341	-	6	60	82.56	-2.71	0.63	0.983494
10398	dm3.chr3R	13,574,262 – 13,574,345	- - - - - - - -	14302	13,574,262 – 13,574,345	+	3	83	95.98	-1.22	0.95	0.610863
10399	dm3.chr3R	13,575,316 – 13,575,407	- - - - - - - -	14303	13,575,316 – 13,575,407	-	8	120	72.53	-1.89	0.43	0.667250
10400	dm3.chr3R	13,580,092 – 13,580,168	- - - intron="intron;ID=intron_CG7431:3_CG7431:4;Name=CG7431-in;Parent=FBtr0083532;parent_type=mRNA" - - - -	14304	13,580,092 – 13,580,168	-	6	76	80.53	-1.95	0.63	0.907371
10401	dm3.chr3R	13,580,726 – 13,580,861	- - CDS="CDS;ID=CDS_CG7431:3_46;Name=CG7431-cds;Parent=FBtr0083532;parent_type=mRNA" - - - - -	14305	13,580,726 – 13,580,861	+	11	135	71.67	-1.72	0.41	0.893558
10402	dm3.chr3R	13,591,619 – 13,591,713	- - - - - - - -	14306	13,591,619 – 13,591,713	+	5	109	74.02	-2.30	0.42	0.823059
10403	dm3.chr3R	13,603,504 – 13,603,616	- - - - - - - -	14307	13,603,504 – 13,603,616	-	4	117	75.80	-2.24	0.45	0.690685
10404	dm3.chr3R	13,612,202 – 13,612,296	- - - - - - - -	14308	13,612,202 – 13,612,296	-	5	94	90.21	-1.62	0.80	0.520424
10405	dm3.chr3R	13,613,326 – 13,613,396	- - - - - - - -	14309	13,613,326 – 13,613,396	+	5	70	95.43	-1.43	0.91	0.612213
10406	dm3.chr3R	13,618,731 – 13,618,863	- - - - - - - -	14310	13,618,731 – 13,618,829	-	8	112	73.43	-1.88	0.44	0.762614
10406	dm3.chr3R	13,618,731 – 13,618,863	- - - - - - - -	14311	13,618,763 – 13,618,863	+	8	116	68.26	-1.63	0.37	0.599746
10407	dm3.chr3R	13,619,674 – 13,619,848	- - - - - - - -	14312	13,619,674 – 13,619,782	+	6	116	83.75	-2.83	0.63	0.980911
				14313	13,619,674 – 13,619,782	-	6	116	83.75	-1.78	0.72	0.812564
				14314	13,619,713 – 13,619,810	+	5	115	86.36	-2.78	0.84	0.990966
				14315	13,619,713 – 13,619,810	-	5	115	86.36	-1.82	0.84	0.880189
				14316	13,619,742 – 13,619,848	+	5	118	90.87	-3.99	0.89	0.998603
				14317	13,619,742 – 13,619,848	-	5	118	90.87	-2.15	0.75	0.684881
10408	dm3.chr3R	13,630,964 – 13,631,055	- - - - - - - -	14318	13,630,964 – 13,631,055	-	6	112	62.32	-1.99	0.23	0.575014
10409	dm3.chr3R	13,641,405 – 13,641,476	- - - intron="intron;ID=intron_FBgn0261649:3_FBgn0261649:4;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14319	13,641,405 – 13,641,476	+	5	71	98.87	-2.36	1.01	0.989405
10410	dm3.chr3R	13,643,437 – 13,643,529	- - - intron="intron;ID=intron_FBgn0261649:3_FBgn0261649:4;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14320	13,643,437 – 13,643,529	+	6	92	87.17	-1.85	0.73	0.715298
10411	dm3.chr3R	13,646,866 – 13,646,922	- - - intron="intron;ID=intron_FBgn0261649:3_FBgn0261649:4;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14321	13,646,866 – 13,646,922	+	5	59	73.32	-1.49	0.50	0.567000
10412	dm3.chr3R	13,647,097 – 13,647,195	- - - intron="intron;ID=intron_FBgn0261649:3_FBgn0261649:4;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14322	13,647,097 – 13,647,195	-	6	98	70.09	-2.70	0.55	0.998132
10413	dm3.chr3R	13,654,709 – 13,654,835	- - - intron="intron;ID=intron_FBgn0261649:3_FBgn0261649:4;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14323	13,654,709 – 13,654,803	+	7	114	70.08	-1.94	0.45	0.939844
10413	dm3.chr3R	13,654,709 – 13,654,835		14324	13,654,733 – 13,654,835	+	7	113	67.14	-2.31	0.59	0.999225
10414	dm3.chr3R	13,660,337 – 13,660,438	- - - intron="intron;ID=intron_FBgn0261649:3_FBgn0261649:4;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14325	13,660,337 – 13,660,438	-	5	102	80.08	-2.32	0.78	0.986856
10415	dm3.chr3R	13,661,891 – 13,661,942	- - - - - - - -	14326	13,661,891 – 13,661,942	+	8	53	84.32	-1.54	0.74	0.671523
10416	dm3.chr3R	13,665,613 – 13,665,709	- - - intron="intron;ID=intron_FBgn0261649:4_FBgn0261649:5;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14327	13,665,613 – 13,665,709	+	4	99	46.46	-0.42	0.54	0.939479
10417	dm3.chr3R	13,669,967 – 13,670,063	- - - intron="intron;ID=intron_FBgn0261649:4_FBgn0261649:5;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14328	13,669,967 – 13,670,063	+	9	104	64.85	-1.61	0.30	0.748393
10418	dm3.chr3R	13,681,224 – 13,681,330	- - - intron="intron;ID=intron_FBgn0261649:6_FBgn0261649:7;Name=tinc-in;Parent=FBtr0089772,FBtr0089771,FBtr0304905;parent_type=mRNA" - - - -	14329	13,681,224 – 13,681,330	+	8	106	70.60	-1.73	0.31	0.509480
10419	dm3.chr3R	13,695,998 – 13,696,093	- - CDS="CDS;ID=CDS_FBgn0261649:12_243;Name=tinc-cds;Parent=FBtr0304905;parent_type=mRNA" - - - - -	14330	13,695,998 – 13,696,093	+	14	110	72.68	-1.18	0.47	0.735799
10420	dm3.chr3R	13,698,963 – 13,699,058	- - - - - - - -	14331	13,698,963 – 13,699,058	-	11	108	52.83	-0.01	0.45	0.554128
10421	dm3.chr3R	13,706,988 – 13,707,057	- - CDS="CDS;ID=CDS_FBgn0053547:12_249;Name=Rim-cds;Parent=FBtr0305015,FBtr0305016;parent_type=mRNA" - - - - -	14332	13,706,988 – 13,707,057	+	4	69	99.28	-1.44	0.96	0.733717
10421	dm3.chr3R	13,706,988 – 13,707,057		14333	13,706,988 – 13,707,057	-	4	69	99.28	-1.41	1.00	0.868374
10422	dm3.chr3R	13,708,402 – 13,708,544	- - - intron="intron;ID=intron_FBgn0053547:17_FBgn0053547:14;Name=Rim-in;Parent=FBtr0305023;parent_type=mRNA" - - - -	14334	13,708,402 – 13,708,544	-	11	157	77.90	-3.24	0.46	0.995827
10423	dm3.chr3R	13,710,160 – 13,710,255	- - - intron="intron;ID=intron_FBgn0053547:17_FBgn0053547:15;Name=Rim-in;Parent=FBtr0305022;parent_type=mRNA" - - - -	14335	13,710,160 – 13,710,255	+	12	114	67.75	-1.62	0.42	0.953458
10424	dm3.chr3R	13,715,792 – 13,715,901	- - - intron="intron;ID=intron_FBgn0053547:21_FBgn0053547:20;Name=Rim-in;Parent=FBtr0301555,FBtr0305014,FBtr0305015,FBtr0305016,FBtr0305017,FBtr0305018,FBtr0305019,FBtr0305020,FBtr0305021,FBtr0305022,FBtr0305023;parent_type=mRNA" - - - -	14336	13,715,792 – 13,715,901	+	6	110	67.65	-2.44	0.48	0.997393
10424	dm3.chr3R	13,715,792 – 13,715,901		14337	13,715,792 – 13,715,901	-	6	110	67.65	-3.40	0.44	0.999666
10425	dm3.chr3R	13,728,103 – 13,728,197	- - - intron="intron;ID=intron_FBgn0053547:28_FBgn0053547:27;Name=Rim-in;Parent=FBtr0301555;parent_type=mRNA" - - - -	14338	13,728,103 – 13,728,197	+	10	105	66.97	-1.99	0.28	0.802441
10425	dm3.chr3R	13,728,103 – 13,728,197		14339	13,728,103 – 13,728,197	-	10	105	66.97	-0.88	0.43	0.627888
10426	dm3.chr3R	13,747,784 – 13,747,896	- - - - - - - -	14340	13,747,784 – 13,747,896	-	4	112	81.90	-2.55	0.67	0.960117
10427	dm3.chr3R	13,748,545 – 13,748,627	- - - - - - - -	14341	13,748,545 – 13,748,627	-	6	83	77.81	-1.71	0.51	0.621683
10428	dm3.chr3R	13,756,959 – 13,757,071	- - - - - - - -	14342	13,756,959 – 13,757,071	+	8	122	77.37	-1.70	0.49	0.536393
10429	dm3.chr3R	13,758,451 – 13,758,559	- - - intron="intron;ID=intron_FBgn0000363:2_FBgn0000363:3;Name=cpo-in;Parent=FBtr0083535,FBtr0083534,FBtr0300242;parent_type=mRNA" - - - -	14343	13,758,451 – 13,758,552	+	5	119	67.41	-2.33	0.56	0.997563
				14344	13,758,451 – 13,758,552	-	5	119	67.41	-0.97	0.59	0.849250
				14345	13,758,458 – 13,758,559	+	5	118	68.74	-2.46	0.56	0.997908
				14346	13,758,458 – 13,758,559	-	5	118	68.74	-1.66	0.64	0.988361
10430	dm3.chr3R	13,763,664 – 13,763,765	- - - intron="intron;ID=intron_FBgn0000363:3_FBgn0000363:8;Name=cpo-in;Parent=FBtr0083535,FBtr0083534,FBtr0100377,FBtr0300242;parent_type=mRNA" - - - -	14347	13,763,664 – 13,763,765	-	6	110	63.84	-2.21	0.44	0.997064
10431	dm3.chr3R	13,764,105 – 13,764,223	- - - intron="intron;ID=intron_FBgn0000363:3_FBgn0000363:8;Name=cpo-in;Parent=FBtr0083535,FBtr0083534,FBtr0100377,FBtr0300242;parent_type=mRNA" - - - -	14348	13,764,105 – 13,764,223	+	5	126	72.80	-1.35	0.54	0.618442
10432	dm3.chr3R	13,768,294 – 13,768,424	- - - intron="intron;ID=intron_FBgn0000363:3_FBgn0000363:8;Name=cpo-in;Parent=FBtr0083535,FBtr0083534,FBtr0100377,FBtr0300242;parent_type=mRNA" - - - -	14349	13,768,294 – 13,768,414	-	6	120	75.42	-1.54	0.53	0.720921
10432	dm3.chr3R	13,768,294 – 13,768,424		14350	13,768,317 – 13,768,424	-	6	120	74.65	-1.66	0.65	0.944892
10433	dm3.chr3R	13,768,714 – 13,768,808	- - - intron="intron;ID=intron_FBgn0000363:3_FBgn0000363:8;Name=cpo-in;Parent=FBtr0083535,FBtr0083534,FBtr0100377,FBtr0300242;parent_type=mRNA" - - - -	14351	13,768,714 – 13,768,808	+	6	106	77.36	-1.93	0.73	0.963666
10434	dm3.chr3R	13,774,538 – 13,774,648	- - - intron="intron;ID=intron_FBgn0259934:3_FBgn0259934:4;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14352	13,774,538 – 13,774,648	-	4	110	76.91	-2.29	0.46	0.615893
10435	dm3.chr3R	13,775,036 – 13,775,115	- - - intron="intron;ID=intron_FBgn0259934:3_FBgn0259934:4;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14353	13,775,036 – 13,775,115	-	7	80	72.78	-2.54	0.32	0.913082
10436	dm3.chr3R	13,776,119 – 13,776,186	- - - intron="intron;ID=intron_FBgn0259934:3_FBgn0259934:4;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14354	13,776,119 – 13,776,186	-	6	81	68.00	-1.24	0.51	0.788495
10437	dm3.chr3R	13,776,822 – 13,776,881	- - - intron="intron;ID=intron_FBgn0259934:3_FBgn0259934:4;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14355	13,776,822 – 13,776,881	+	4	72	75.57	-1.50	0.89	0.948641
10438	dm3.chr3R	13,777,981 – 13,778,072	- - - intron="intron;ID=intron_FBgn0259934:3_FBgn0259934:4;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14356	13,777,981 – 13,778,072	+	10	92	86.38	-2.40	0.57	0.692212
10439	dm3.chr3R	13,781,108 – 13,781,210	- - - intron="intron;ID=intron_FBgn0259934:3_FBgn0259934:4;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14357	13,781,108 – 13,781,210	-	5	121	79.04	-1.63	0.65	0.663471
10440	dm3.chr3R	13,781,915 – 13,782,009	- - - intron="intron;ID=intron_FBgn0259934:3_FBgn0259934:4;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14358	13,781,915 – 13,782,009	+	5	94	93.76	-1.95	0.81	0.624695
10440	dm3.chr3R	13,781,915 – 13,782,009		14359	13,781,915 – 13,782,009	-	5	94	93.76	-2.92	0.91	0.991928
10441	dm3.chr3R	13,808,929 – 13,809,053	- - - intron="intron;ID=intron_FBgn0259934:4_FBgn0259934:5;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14360	13,808,929 – 13,809,053	-	5	124	81.66	-1.57	0.71	0.739367
10442	dm3.chr3R	13,814,727 – 13,814,778	- - - intron="intron;ID=intron_FBgn0259934:4_FBgn0259934:5;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14361	13,814,727 – 13,814,778	+	4	51	95.10	-1.24	0.93	0.567502
10443	dm3.chr3R	13,817,116 – 13,817,218	- - - intron="intron;ID=intron_FBgn0259934:4_FBgn0259934:5;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14362	13,817,116 – 13,817,218	+	11	111	72.18	-1.13	0.54	0.765266
10444	dm3.chr3R	13,823,232 – 13,823,342	- - - intron="intron;ID=intron_FBgn0259934:4_FBgn0259934:5;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14363	13,823,232 – 13,823,326	+	11	120	75.70	-1.62	0.61	0.918989
				14364	13,823,241 – 13,823,342	+	11	118	75.72	-1.85	0.58	0.973576
				14365	13,823,241 – 13,823,342	-	11	118	75.72	-1.26	0.55	0.739103
10445	dm3.chr3R	13,823,383 – 13,823,436	- - - intron="intron;ID=intron_FBgn0259934:4_FBgn0259934:5;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14366	13,823,383 – 13,823,436	-	5	53	90.94	-1.71	1.03	0.983229
10446	dm3.chr3R	13,828,576 – 13,828,688	- - - intron="intron;ID=intron_FBgn0259934:4_FBgn0259934:5;Name=CG42457-in;Parent=FBtr0300243,FBtr0300244;parent_type=mRNA" - - - -	14367	13,828,576 – 13,828,688	+	6	112	75.83	-1.05	0.59	0.531406
10447	dm3.chr3R	13,835,743 – 13,835,857	- - - - - - - -	14368	13,835,743 – 13,835,857	-	14	120	85.50	-2.23	0.57	0.805470
10448	dm3.chr3R	13,850,808 – 13,850,975	- - CDS="CDS;ID=CDS_CG7794:3_34;Name=CG7794-cds;Parent=FBtr0083540;parent_type=mRNA" - - - - -	14369	13,850,808 – 13,850,928	+	15	121	75.53	-2.06	0.47	0.956957
				14370	13,850,848 – 13,850,964	+	15	116	73.76	-1.93	0.31	0.522092
				14371	13,850,859 – 13,850,975	+	15	116	71.95	-1.74	0.31	0.582056
10449	dm3.chr3R	13,854,634 – 13,854,729	- - - - - - - -	14372	13,854,634 – 13,854,729	-	6	100	74.49	-1.48	0.61	0.765719
10450	dm3.chr3R	13,856,472 – 13,856,611	- - - - - - - -	14373	13,856,472 – 13,856,611	+	7	144	73.16	-1.64	0.41	0.682534
10451	dm3.chr3R	13,857,434 – 13,857,567	- - - - - - - -	14374	13,857,434 – 13,857,567	+	5	133	91.00	-1.87	0.77	0.553674
10452	dm3.chr3R	13,857,796 – 13,857,900	- - - - - - - -	14375	13,857,796 – 13,857,900	+	8	107	87.04	-1.80	0.75	0.756115
10452	dm3.chr3R	13,857,796 – 13,857,900	- - - - - - - -	14376	13,857,796 – 13,857,900	-	8	107	87.04	-1.89	0.84	0.932144
10453	dm3.chr3R	13,877,411 – 13,877,519	- - - - - - - -	14377	13,877,411 – 13,877,519	-	7	114	78.96	-2.17	0.45	0.696181
10454	dm3.chr3R	13,889,757 – 13,889,870	- - - - - - - -	14378	13,889,757 – 13,889,855	-	6	103	77.19	-1.65	0.67	0.878048
10454	dm3.chr3R	13,889,757 – 13,889,870	- - - - - - - -	14379	13,889,760 – 13,889,870	-	6	115	73.25	-1.41	0.65	0.889861
10455	dm3.chr3R	13,892,490 – 13,892,587	- - - - - - - -	14380	13,892,490 – 13,892,587	+	7	106	71.17	-1.00	0.49	0.571424
10456	dm3.chr3R	13,892,644 – 13,892,761	- - - - - - - -	14381	13,892,644 – 13,892,761	-	12	119	94.58	-1.37	0.92	0.703226
10457	dm3.chr3R	13,897,284 – 13,897,452	- - - - - - - -	14382	13,897,284 – 13,897,395	+	12	119	89.11	-2.36	0.64	0.776980
				14383	13,897,284 – 13,897,395	-	12	119	89.11	-2.64	0.64	0.905150
				14384	13,897,315 – 13,897,426	+	12	119	83.49	-1.53	0.65	0.600101
				14385	13,897,355 – 13,897,452	+	9	119	61.22	-1.94	0.39	0.989625
				14386	13,897,355 – 13,897,452	-	9	119	61.22	-1.75	0.37	0.968005
10458	dm3.chr3R	13,915,574 – 13,915,646	- - - - - - - -	14387	13,915,574 – 13,915,646	-	3	72	85.38	-0.97	0.92	0.561712
10459	dm3.chr3R	13,917,797 – 13,917,903	- - - intron="intron;ID=intron_FBgn0003499:1_FBgn0003499:2;Name=sr-in;Parent=FBtr0083542;parent_type=mRNA" - - - -	14388	13,917,797 – 13,917,903	+	5	108	88.47	-2.50	0.66	0.815283
10460	dm3.chr3R	13,920,211 – 13,920,306	- - - intron="intron;ID=intron_FBgn0003499:1_FBgn0003499:2;Name=sr-in;Parent=FBtr0083542;parent_type=mRNA" - - - -	14389	13,920,211 – 13,920,306	+	6	95	78.32	-1.84	0.58	0.879874
10460	dm3.chr3R	13,920,211 – 13,920,306		14390	13,920,211 – 13,920,306	-	6	95	78.32	-2.23	0.46	0.832522
10461	dm3.chr3R	13,927,821 – 13,927,920	- - - intron="intron;ID=intron_FBgn0003499:3_FBgn0003499:6;Name=sr-in;Parent=FBtr0083542;parent_type=mRNA" - - - -	14391	13,927,821 – 13,927,920	+	6	106	73.12	-1.63	0.56	0.893290
10462	dm3.chr3R	13,934,351 – 13,934,433	FBnoncoding="tRNA;ID=FBtr0083544;Name=tRNA:CR31242-RA;Parent=FBgn0051242;Alias=CR31242-RA;Dbxref=FlyBase_Annotation_IDs:CR31242-RA;score_text=Weakly" tRNAscann="Gly_chr3R_trna24" - intron="intron;ID=intron_FBgn0003499:3_FBgn0003499:6;Name=sr-in;Parent=FBtr0083542;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010436523.1/406-477\|5.1e-27" - - -	14392	13,934,351 – 13,934,433	+	13	96	83.34	-1.61	0.92	0.967175
10462	dm3.chr3R	13,934,351 – 13,934,433		14393	13,934,351 – 13,934,433	-	13	96	83.34	-2.56	0.87	0.995474
10463	dm3.chr3R	13,934,711 – 13,934,802	FBnoncoding="tRNA;ID=FBtr0083545;Name=tRNA:CR31518-RA;Parent=FBgn0051518;Alias=CR31518-RA;Dbxref=FlyBase_Annotation_IDs:CR31518-RA;score_text=Weakly" tRNAscann="Gly_chr3R_trna25" - intron="intron;ID=intron_FBgn0003499:3_FBgn0003499:6;Name=sr-in;Parent=FBtr0083542;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010436523.1/406-477\|5.8e-27" - - -	14394	13,934,711 – 13,934,802	+	11	107	74.08	-1.49	0.87	0.989556
10463	dm3.chr3R	13,934,711 – 13,934,802		14395	13,934,711 – 13,934,802	-	11	107	74.08	-2.54	0.78	0.999091
10464	dm3.chr3R	13,937,347 – 13,937,402	- - - intron="intron;ID=intron_FBgn0003499:3_FBgn0003499:6;Name=sr-in;Parent=FBtr0083542;parent_type=mRNA" - - - -	14396	13,937,347 – 13,937,402	+	8	65	65.87	-2.90	0.40	0.998622
10464	dm3.chr3R	13,937,347 – 13,937,402		14397	13,937,347 – 13,937,402	-	8	65	65.87	-3.04	0.38	0.998695
10465	dm3.chr3R	13,947,766 – 13,947,856	- - - intron="intron;ID=intron_FBgn0003499:3_FBgn0003499:6;Name=sr-in;Parent=FBtr0083542;parent_type=mRNA" - - - -	14398	13,947,766 – 13,947,856	+	12	99	67.96	-0.47	0.69	0.952419
10466	dm3.chr3R	13,949,573 – 13,949,634	- - - intron="intron;ID=intron_FBgn0003499:5_FBgn0003499:6;Name=sr-in;Parent=FBtr0083543;parent_type=mRNA" - - - -	14399	13,949,573 – 13,949,634	-	5	61	98.36	-0.94	1.02	0.746980
10467	dm3.chr3R	13,957,530 – 13,957,594	- - CDS="CDS;ID=CDS_FBgn0003499:9_92;Name=sr-cds;Parent=FBtr0301615;parent_type=mRNA" - - - - -	14400	13,957,530 – 13,957,594	+	4	65	70.90	-1.68	0.65	0.941375
10467	dm3.chr3R	13,957,530 – 13,957,594		14401	13,957,530 – 13,957,594	-	4	65	70.90	-2.05	0.50	0.897468
10468	dm3.chr3R	13,966,105 – 13,966,196	- - - - - - - -	14402	13,966,105 – 13,966,196	-	6	102	86.27	-1.36	0.80	0.543051
10469	dm3.chr3R	13,966,411 – 13,966,524	- - - - - - - -	14403	13,966,411 – 13,966,515	+	9	108	73.03	-2.00	0.45	0.942634
10469	dm3.chr3R	13,966,411 – 13,966,524	- - - - - - - -	14404	13,966,416 – 13,966,524	+	9	112	70.64	-1.74	0.44	0.913484
10470	dm3.chr3R	13,967,946 – 13,968,044	- - - - - - - -	14405	13,967,946 – 13,968,044	+	10	108	68.87	-1.28	0.40	0.655508
10471	dm3.chr3R	13,972,632 – 13,972,729	- - - - - - - -	14406	13,972,632 – 13,972,729	-	8	104	94.12	-1.42	0.96	0.854915
10472	dm3.chr3R	13,973,885 – 13,973,980	- - - - - - - -	14407	13,973,885 – 13,973,980	-	12	115	84.13	-2.08	0.57	0.639906
10473	dm3.chr3R	13,979,812 – 13,979,911	- - - - - - - -	14408	13,979,812 – 13,979,911	-	6	100	72.43	-1.67	0.47	0.623040
10474	dm3.chr3R	13,980,848 – 13,980,938	- - - - - - - -	14409	13,980,848 – 13,980,938	+	10	94	74.60	-1.48	0.53	0.890078
10474	dm3.chr3R	13,980,848 – 13,980,938	- - - - - - - -	14410	13,980,848 – 13,980,938	-	10	94	74.60	-0.82	0.57	0.536281
10475	dm3.chr3R	13,982,416 – 13,982,510	- - - - - - - -	14411	13,982,416 – 13,982,510	+	5	119	65.68	-1.42	0.40	0.610135
10476	dm3.chr3R	13,983,506 – 13,983,606	- - - - - - - -	14412	13,983,506 – 13,983,606	-	5	107	80.51	-1.76	0.61	0.500000
10477	dm3.chr3R	14,010,182 – 14,010,232	- - CDS="CDS;ID=CDS_FBgn0038575:1_57;Name=CG7208-cds;Parent=FBtr0083618,FBtr0083617;parent_type=mRNA" - - - - -	14413	14,010,182 – 14,010,232	+	3	50	89.33	-1.85	0.88	0.872876
10478	dm3.chr3R	14,014,950 – 14,015,051	- - - intron="intron;ID=intron_FBgn0038578:1_FBgn0038578:2;Name=MED17-in;Parent=FBtr0083558;parent_type=mRNA" - - - -	14414	14,014,950 – 14,015,051	-	12	110	52.21	-0.56	0.35	0.607388
10479	dm3.chr3R	14,023,561 – 14,023,665	- - - intron="intron;ID=intron_FBgn0011481:4_FBgn0011481:3;Name=Ssdp-in;Parent=FBtr0083611;parent_type=mRNA" - - - -	14415	14,023,561 – 14,023,665	+	5	104	94.62	-2.18	0.88	0.915876
10479	dm3.chr3R	14,023,561 – 14,023,665		14416	14,023,561 – 14,023,665	-	5	104	94.62	-3.30	0.82	0.988588
10480	dm3.chr3R	14,025,463 – 14,025,648	- - - - - - - -	14417	14,025,463 – 14,025,583	+	5	120	84.93	-1.98	0.66	0.650680
10480	dm3.chr3R	14,025,463 – 14,025,648	- - - - - - - -	14418	14,025,543 – 14,025,648	+	5	120	76.06	-1.63	0.56	0.579189
10481	dm3.chr3R	14,029,118 – 14,029,216	- - - intron="intron;ID=intron_CG7985:1_CG7985:2;Name=CG7985-in;Parent=FBtr0083559;parent_type=mRNA" - - - -	14419	14,029,118 – 14,029,216	-	8	118	60.45	-2.02	0.21	0.758083
10482	dm3.chr3R	14,059,380 – 14,059,443	- - - - - - - -	14420	14,059,380 – 14,059,443	+	6	63	68.29	-0.66	0.53	0.585354
10483	dm3.chr3R	14,065,009 – 14,065,095	- - - - - - - -	14421	14,065,009 – 14,065,095	+	9	90	54.32	-3.44	0.04	0.980968
10484	dm3.chr3R	14,065,856 – 14,065,968	- - - - - - - -	14422	14,065,856 – 14,065,968	-	13	117	68.23	-0.90	0.42	0.726791
10485	dm3.chr3R	14,070,024 – 14,070,125	- - - intron="intron;ID=intron_FBgn0020238:2_FBgn0020238:3;Name=14-3-3epsilon-in;Parent=FBtr0083565,FBtr0083567;parent_type=mRNA" - - - -	14423	14,070,024 – 14,070,125	+	5	101	91.43	-1.84	0.81	0.671367
10486	dm3.chr3R	14,085,699 – 14,085,792	- - - - - - - -	14424	14,085,699 – 14,085,792	+	10	103	78.70	-2.21	0.46	0.871254
10486	dm3.chr3R	14,085,699 – 14,085,792	- - - - - - - -	14425	14,085,699 – 14,085,792	-	10	103	78.70	-2.26	0.43	0.827332
10487	dm3.chr3R	14,100,673 – 14,100,758	- - CDS="CDS;ID=CDS_CG8053:4_91;Name=eIF-1A-cds;Parent=FBtr0083573;parent_type=mRNA" - - - - -	14426	14,100,673 – 14,100,758	-	13	85	89.95	-1.45	0.87	0.747276
10488	dm3.chr3R	14,116,645 – 14,116,737	- - CDS="CDS;ID=CDS_CG7129:2_38;Name=l(3)05822-cds;Parent=FBtr0083595,FBtr0083596;parent_type=mRNA" - - - - -	14427	14,116,645 – 14,116,737	+	11	99	76.07	-1.61	0.46	0.769601
10488	dm3.chr3R	14,116,645 – 14,116,737		14428	14,116,645 – 14,116,737	-	11	99	76.07	-2.11	0.67	0.996032
10489	dm3.chr3R	14,116,765 – 14,116,857	- - CDS="CDS;ID=CDS_CG7129:2_38;Name=l(3)05822-cds;Parent=FBtr0083595,FBtr0083596;parent_type=mRNA" - - - - -	14429	14,116,765 – 14,116,857	+	9	104	65.94	-1.11	0.41	0.716873
10490	dm3.chr3R	14,139,401 – 14,139,540	- - - - - - - -	14430	14,139,401 – 14,139,540	-	4	144	66.55	-1.46	0.47	0.738132
10491	dm3.chr3R	14,142,987 – 14,143,096	- - CDS="CDS;ID=CDS_CG31235:5_18;Name=CG31235-cds;Parent=FBtr0083588;parent_type=mRNA" - - - - -	14431	14,142,987 – 14,143,096	-	5	109	73.58	-1.94	0.51	0.919588
10492	dm3.chr3R	14,149,475 – 14,149,581	- - - intron="intron;ID=intron_CG31235:3_CG31235:4;Name=CG31235-in;Parent=FBtr0083588;parent_type=mRNA" - - - -	14432	14,149,475 – 14,149,581	+	3	106	89.78	-2.03	0.85	0.869870
10492	dm3.chr3R	14,149,475 – 14,149,581		14433	14,149,475 – 14,149,581	-	3	106	89.78	-2.37	0.95	0.987366
10493	dm3.chr3R	14,156,304 – 14,156,372	- - - - - - - -	14434	14,156,304 – 14,156,372	+	5	77	68.11	-1.03	0.59	0.827533
10493	dm3.chr3R	14,156,304 – 14,156,372	- - - - - - - -	14435	14,156,304 – 14,156,372	-	5	77	68.11	-1.98	0.47	0.962398
10494	dm3.chr3R	14,161,782 – 14,161,880	- - - intron="intron;ID=intron_FBgn0038606:2_FBgn0038606:1;Name=CG15803-in;Parent=FBtr0302308;parent_type=mRNA" - - - -	14436	14,161,782 – 14,161,880	-	8	99	90.51	-1.66	0.80	0.652059
10495	dm3.chr3R	14,165,744 – 14,165,869	- - - intron="intron;ID=intron_FBgn0038606:2_FBgn0038606:1;Name=CG15803-in;Parent=FBtr0302308;parent_type=mRNA" - - - -	14437	14,165,744 – 14,165,869	-	12	132	48.66	-2.21	0.16	0.974102
10496	dm3.chr3R	14,166,436 – 14,166,531	- - - intron="intron;ID=intron_FBgn0038606:2_FBgn0038606:1;Name=CG15803-in;Parent=FBtr0302308;parent_type=mRNA" - - - -	14438	14,166,436 – 14,166,531	+	12	110	82.60	-1.68	0.73	0.900770
10496	dm3.chr3R	14,166,436 – 14,166,531		14439	14,166,436 – 14,166,531	-	12	110	82.60	-1.74	0.58	0.624776
10497	dm3.chr3R	14,174,239 – 14,174,289	- - - intron="intron;ID=intron_FBgn0038606:2_FBgn0038606:1;Name=CG15803-in;Parent=FBtr0302308;parent_type=mRNA" - - - -	14440	14,174,239 – 14,174,289	+	4	50	81.00	-2.14	0.53	0.531215
10498	dm3.chr3R	14,182,771 – 14,182,828	- - - intron="intron;ID=intron_FBgn0038606:4_FBgn0038606:3;Name=CG15803-in;Parent=FBtr0302308;parent_type=mRNA" - - - -	14441	14,182,771 – 14,182,828	+	10	61	70.32	-1.38	0.49	0.922575
10499	dm3.chr3R	14,191,881 – 14,191,941	- - - - - - - -	14442	14,191,881 – 14,191,941	+	4	60	77.44	-2.01	0.49	0.513944
10499	dm3.chr3R	14,191,881 – 14,191,941	- - - - - - - -	14443	14,191,881 – 14,191,941	-	4	60	77.44	-2.45	0.62	0.971026
10500	dm3.chr3R	14,209,884 – 14,209,980	- - - - - - - -	14444	14,209,884 – 14,209,980	-	10	119	62.32	-0.62	0.42	0.510548
10501	dm3.chr3R	14,223,769 – 14,223,872	- - - intron="intron;ID=intron_FBgn0051232:1_FBgn0051232:3;Name=koko-in;Parent=FBtr0083625;parent_type=mRNA" - - - -	14445	14,223,769 – 14,223,872	-	6	120	77.11	-1.90	0.50	0.667869
10502	dm3.chr3R	14,224,289 – 14,224,388	- - - intron="intron;ID=intron_FBgn0051232:1_FBgn0051232:3;Name=koko-in;Parent=FBtr0083625;parent_type=mRNA" - - - -	14446	14,224,289 – 14,224,388	+	5	113	85.46	-2.78	0.53	0.798885
10503	dm3.chr3R	14,228,439 – 14,228,533	- - - - - - - -	14447	14,228,439 – 14,228,533	-	4	103	75.89	-1.40	0.63	0.619761
10504	dm3.chr3R	14,259,861 – 14,259,925	- - - intron="intron;ID=intron_FBgn0004652:9_FBgn0004652:8;Name=fru-in;Parent=FBtr0083648,FBtr0083649,FBtr0083650,FBtr0083651,FBtr0083652,FBtr0083640,FBtr0083641,FBtr0083642,FBtr0083643,FBtr0083644,FBtr0083645,FBtr0083646,FBtr0083647,FBtr0301284;parent_type=mRNA" - - - -	14448	14,259,861 – 14,259,925	+	4	64	62.70	-1.16	0.69	0.980349
10505	dm3.chr3R	14,265,538 – 14,265,631	- - - - - - - -	14449	14,265,538 – 14,265,631	-	4	94	67.91	-2.48	0.37	0.934597
10506	dm3.chr3R	14,276,815 – 14,276,919	- - - - - - - -	14450	14,276,815 – 14,276,919	-	4	105	82.86	-1.69	0.72	0.597081
10507	dm3.chr3R	14,286,693 – 14,286,800	- - - - - - - -	14451	14,286,693 – 14,286,800	+	11	117	84.06	-1.46	0.70	0.625333
10508	dm3.chr3R	14,299,231 – 14,299,348	- - - intron="intron;ID=intron_FBgn0004652:21_FBgn0004652:15;Name=fru-in;Parent=FBtr0301284;parent_type=mRNA" - - - -	14452	14,299,231 – 14,299,348	+	5	120	69.63	-1.15	0.49	0.529911
10509	dm3.chr3R	14,299,400 – 14,299,494	- - - intron="intron;ID=intron_FBgn0004652:21_FBgn0004652:15;Name=fru-in;Parent=FBtr0301284;parent_type=mRNA" - - - -	14453	14,299,400 – 14,299,494	+	8	112	77.95	-2.36	0.47	0.885415
10510	dm3.chr3R	14,299,994 – 14,300,087	- - - intron="intron;ID=intron_FBgn0004652:21_FBgn0004652:15;Name=fru-in;Parent=FBtr0301284;parent_type=mRNA" - - - -	14454	14,299,994 – 14,300,087	-	9	99	84.51	-2.00	0.56	0.577579
10511	dm3.chr3R	14,306,307 – 14,306,421	- - - - - - - -	14455	14,306,307 – 14,306,421	+	9	120	97.11	-1.24	0.93	0.528941
10511	dm3.chr3R	14,306,307 – 14,306,421	- - - - - - - -	14456	14,306,307 – 14,306,421	-	9	120	97.11	-1.28	0.96	0.721021
10512	dm3.chr3R	14,315,165 – 14,315,228	- - - - - - - -	14457	14,315,165 – 14,315,228	+	7	63	66.49	-1.12	0.44	0.826335
10512	dm3.chr3R	14,315,165 – 14,315,228	- - - - - - - -	14458	14,315,165 – 14,315,228	-	7	63	66.49	-0.98	0.45	0.770159
10513	dm3.chr3R	14,326,619 – 14,326,688	- - - - - - - -	14459	14,326,619 – 14,326,688	+	6	77	83.10	-1.81	0.92	0.975544
10514	dm3.chr3R	14,326,826 – 14,326,928	- - - - - - - -	14460	14,326,826 – 14,326,928	-	7	115	63.99	-1.22	0.40	0.763246
10515	dm3.chr3R	14,339,610 – 14,339,705	- - - - - - - -	14461	14,339,610 – 14,339,705	-	12	110	74.34	-1.36	0.64	0.919107
10516	dm3.chr3R	14,340,844 – 14,341,054	- - CDS="CDS;ID=CDS_FBgn0004652:21_97;Name=fru-cds;Parent=FBtr0301284;parent_type=mRNA" - - - - -	14462	14,340,844 – 14,340,940	+	9	120	72.25	-1.69	0.55	0.918753
				14463	14,340,940 – 14,341,042	+	12	120	73.30	-1.39	0.47	0.549121
				14464	14,340,945 – 14,341,054	+	12	120	77.60	-1.66	0.53	0.732982
10517	dm3.chr3R	14,348,386 – 14,348,486	- - - intron="intron;ID=intron_FBgn0004652:23_FBgn0004652:21;Name=fru-in;Parent=FBtr0301284;parent_type=mRNA" - - - -	14465	14,348,386 – 14,348,486	-	6	100	75.16	-1.20	0.84	0.916961
10518	dm3.chr3R	14,349,751 – 14,349,862	- - - intron="intron;ID=intron_FBgn0004652:23_FBgn0004652:21;Name=fru-in;Parent=FBtr0301284;parent_type=mRNA" - - - -	14466	14,349,751 – 14,349,862	-	5	116	72.21	-1.33	0.85	0.962497
10519	dm3.chr3R	14,353,493 – 14,353,548	- - - intron="intron;ID=intron_FBgn0004652:23_FBgn0004652:21;Name=fru-in;Parent=FBtr0301284;parent_type=mRNA" - - - -	14467	14,353,493 – 14,353,548	+	3	55	98.78	-3.37	1.00	0.997559
10519	dm3.chr3R	14,353,493 – 14,353,548		14468	14,353,493 – 14,353,548	-	3	55	98.78	-4.56	1.00	0.998756
10520	dm3.chr3R	14,376,112 – 14,376,227	- - - - - - - -	14469	14,376,112 – 14,376,227	-	6	115	83.48	-2.28	0.56	0.767379
10521	dm3.chr3R	14,384,357 – 14,384,469	- - - - - - - -	14470	14,384,357 – 14,384,469	-	4	113	86.21	-2.90	0.89	0.995553
10522	dm3.chr3R	14,389,623 – 14,389,718	- - - - - - - -	14471	14,389,623 – 14,389,718	+	8	99	79.77	-1.77	0.72	0.959134
10523	dm3.chr3R	14,398,758 – 14,398,849	- - - - - - - -	14472	14,398,758 – 14,398,849	-	7	102	68.78	-1.36	0.39	0.547975
10524	dm3.chr3R	14,408,228 – 14,408,324	- - - intron="intron;ID=intron_FBgn0023083:2_FBgn0023083:6;Name=fray-in;Parent=FBtr0083637;parent_type=mRNA" - - - -	14473	14,408,228 – 14,408,324	-	4	98	90.96	-2.23	0.70	0.551170
10525	dm3.chr3R	14,408,359 – 14,408,450	- - - intron="intron;ID=intron_FBgn0023083:2_FBgn0023083:6;Name=fray-in;Parent=FBtr0083637;parent_type=mRNA" - - - -	14474	14,408,359 – 14,408,450	-	4	91	92.22	-3.51	0.73	0.987474
10526	dm3.chr3R	14,440,521 – 14,440,594	- - - - - - - -	14475	14,440,521 – 14,440,594	-	7	74	78.82	-1.96	0.89	0.988244
10527	dm3.chr3R	14,450,156 – 14,450,265	- - - - - - - -	14476	14,450,156 – 14,450,265	-	6	109	76.27	-1.13	0.61	0.500000
10528	dm3.chr3R	14,450,617 – 14,450,713	- - - - - - - -	14477	14,450,617 – 14,450,713	+	12	115	73.94	-0.66	0.66	0.563748
10529	dm3.chr3R	14,454,186 – 14,454,276	FBnoncoding="tRNA;ID=FBtr0083693;Name=tRNA:CR31228-RA;Parent=FBgn0051228;Alias=CR31228-RA;Dbxref=FlyBase_Annotation_IDs:CR31228-RA;score_text=Weakly" tRNAscann="Pro_chr3R_trna48" - - "Rfam_10.0=RF00005;tRNA;AAAB01017465.1/91-162\|2.3e-26" - - -	14478	14,454,186 – 14,454,276	+	14	117	81.36	-3.08	0.90	0.998456
10529	dm3.chr3R	14,454,186 – 14,454,276		14479	14,454,186 – 14,454,276	-	14	117	81.36	-1.12	0.86	0.852289
10530	dm3.chr3R	14,464,758 – 14,464,899	- - - intron="intron;ID=intron_FBgn0038632:4_FBgn0038632:3;Name=CG14301-in;Parent=FBtr0290199;parent_type=mRNA" - - - -	14480	14,464,758 – 14,464,899	-	6	156	70.37	-1.21	0.71	0.950764
10531	dm3.chr3R	14,505,857 – 14,505,962	- - - - - - - -	14481	14,505,857 – 14,505,962	+	13	108	65.87	-1.39	0.31	0.743797
10532	dm3.chr3R	14,509,106 – 14,509,213	- - - intron="intron;ID=intron_CG7708:3_CG7708:4;Name=CG7708-in;Parent=FBtr0083668,FBtr0083669;parent_type=mRNA" - - - -	14482	14,509,106 – 14,509,213	-	5	107	72.46	-1.92	0.51	0.863893
10533	dm3.chr3R	14,510,509 – 14,510,611	- - - - - - - -	14483	14,510,509 – 14,510,611	-	11	108	67.31	-0.88	0.43	0.727094
10534	dm3.chr3R	14,526,463 – 14,526,583	- - - - - - - -	14484	14,526,463 – 14,526,583	-	6	120	75.66	-1.69	0.46	0.563798
10535	dm3.chr3R	14,534,167 – 14,534,280	- - - intron="intron;ID=intron_CG32848:1_CG32848:2;Name=VAChT-in;Parent=FBtr0083671;parent_type=mRNA" - - - -	14485	14,534,167 – 14,534,257	-	8	102	64.10	-1.17	0.40	0.761497
10535	dm3.chr3R	14,534,167 – 14,534,280		14486	14,534,188 – 14,534,280	-	8	106	60.39	-1.86	0.29	0.880742
10536	dm3.chr3R	14,536,590 – 14,536,734	- - - intron="intron;ID=intron_CG32848:1_CG32848:2;Name=VAChT-in;Parent=FBtr0083671;parent_type=mRNA" - - - -	14487	14,536,590 – 14,536,734	+	8	150	70.34	-1.51	0.40	0.554070
10537	dm3.chr3R	14,537,030 – 14,537,122	- - - intron="intron;ID=intron_CG32848:1_CG32848:2;Name=VAChT-in;Parent=FBtr0083671;parent_type=mRNA" - - - -	14488	14,537,030 – 14,537,122	-	7	93	80.92	-1.28	0.70	0.616980
10538	dm3.chr3R	14,541,350 – 14,541,470	- - - - - - - -	14489	14,541,350 – 14,541,440	+	11	106	78.42	-1.19	0.68	0.770609
				14490	14,541,373 – 14,541,470	+	12	120	86.94	-1.73	0.74	0.666017
				14491	14,541,379 – 14,541,470	+	12	120	86.72	-1.54	0.78	0.662577
10539	dm3.chr3R	14,572,452 – 14,572,502	- - - intron="intron;ID=intron_FBgn0260399:1_FBgn0260399:2;Name=gwl-in;Parent=FBtr0083674;parent_type=mRNA" - - - -	14492	14,572,452 – 14,572,502	+	4	50	94.67	-2.30	0.83	0.857312
10540	dm3.chr3R	14,582,324 – 14,582,441	- - CDS="CDS;ID=CDS_FBgn0038651:10_234;Name=CG14299-cds;Parent=FBtr0305051;parent_type=mRNA" - - - - -	14493	14,582,324 – 14,582,441	+	14	117	69.35	-1.78	0.26	0.610257
10541	dm3.chr3R	14,584,771 – 14,584,840	- - - - - - - -	14494	14,584,771 – 14,584,840	+	6	74	59.05	-1.71	0.27	0.717652
10542	dm3.chr3R	14,593,569 – 14,593,673	- - - intron="intron;ID=intron_FBgn0038652:8_FBgn0038652:7;Name=CG7720-in;Parent=FBtr0083678,FBtr0083679,FBtr0301199,FBtr0301200,FBtr0301201;parent_type=mRNA" - - - -	14495	14,593,569 – 14,593,673	-	12	118	89.64	-1.65	0.79	0.610067
10543	dm3.chr3R	14,593,823 – 14,593,929	- - - intron="intron;ID=intron_FBgn0038652:8_FBgn0038652:7;Name=CG7720-in;Parent=FBtr0083678,FBtr0083679,FBtr0301199,FBtr0301200,FBtr0301201;parent_type=mRNA" - - - -	14496	14,593,823 – 14,593,929	+	10	112	66.64	-1.19	0.46	0.928247
10544	dm3.chr3R	14,608,416 – 14,608,534	- - - intron="intron;ID=intron_FBgn0038652:13_FBgn0038652:10;Name=CG7720-in;Parent=FBtr0301199;parent_type=mRNA" - - - -	14497	14,608,416 – 14,608,534	+	7	119	64.42	-2.12	0.35	0.985271
10544	dm3.chr3R	14,608,416 – 14,608,534		14498	14,608,416 – 14,608,534	-	7	119	64.42	-2.56	0.46	0.999525
10545	dm3.chr3R	14,608,919 – 14,608,975	- - - intron="intron;ID=intron_FBgn0038652:13_FBgn0038652:10;Name=CG7720-in;Parent=FBtr0301199;parent_type=mRNA" - - - -	14499	14,608,919 – 14,608,975	+	3	56	86.83	-2.18	0.94	0.982485
10546	dm3.chr3R	14,616,182 – 14,616,327	- - - intron="intron;ID=intron_FBgn0038652:13_FBgn0038652:10;Name=CG7720-in;Parent=FBtr0301199;parent_type=mRNA" - - - -	14500	14,616,182 – 14,616,295	+	5	119	88.58	-1.49	0.94	0.901948
10546	dm3.chr3R	14,616,182 – 14,616,327		14501	14,616,222 – 14,616,327	+	5	113	86.59	-2.25	0.92	0.985634
10547	dm3.chr3R	14,631,150 – 14,631,243	- - - - - - - -	14502	14,631,150 – 14,631,243	+	4	102	89.91	-1.10	0.97	0.782669
10548	dm3.chr3R	14,631,777 – 14,631,871	- - - - - - - -	14503	14,631,777 – 14,631,871	-	14	95	84.98	-2.34	0.74	0.986802
10549	dm3.chr3R	14,632,736 – 14,632,802	- - CDS="CDS;ID=CDS_FBgn0038653:1_136;Name=CG18208-cds;Parent=FBtr0083677;parent_type=mRNA" - - - - -	14504	14,632,736 – 14,632,802	+	11	72	66.56	-1.10	0.40	0.680261
10550	dm3.chr3R	14,656,242 – 14,656,357	- - - intron="intron;ID=intron_FBgn0038653:3_FBgn0038653:2;Name=CG18208-in;Parent=FBtr0083677;parent_type=mRNA" - - - -	14505	14,656,242 – 14,656,332	+	7	108	67.12	-1.42	0.57	0.956622
				14506	14,656,242 – 14,656,332	-	7	108	67.12	-1.20	0.67	0.967166
				14507	14,656,259 – 14,656,357	-	4	98	87.93	-1.32	0.87	0.612229
10551	dm3.chr3R	14,676,603 – 14,676,694	- - - - - - - -	14508	14,676,603 – 14,676,694	-	10	92	77.27	-1.35	0.59	0.809900
10552	dm3.chr3R	14,687,040 – 14,687,136	- - - - - - - -	14509	14,687,040 – 14,687,136	-	11	110	82.84	-1.81	0.61	0.681927
10553	dm3.chr3R	14,690,907 – 14,691,006	- - - - - - - -	14510	14,690,907 – 14,691,006	-	9	119	71.30	-1.35	0.46	0.607007
10554	dm3.chr3R	14,691,892 – 14,692,022	- - - - - - - -	14511	14,691,892 – 14,692,022	-	5	151	84.58	-2.35	0.75	0.952099
10555	dm3.chr3R	14,708,131 – 14,708,271	- - - - - - - -	14512	14,708,131 – 14,708,237	+	8	116	77.56	-1.37	0.59	0.607441
10555	dm3.chr3R	14,708,131 – 14,708,271	- - - - - - - -	14513	14,708,165 – 14,708,271	-	8	118	68.43	-1.49	0.38	0.612429
10556	dm3.chr3R	14,717,366 – 14,717,476	- - - - - - - -	14514	14,717,366 – 14,717,476	-	8	116	72.63	-0.88	0.57	0.710242
10557	dm3.chr3R	14,725,207 – 14,725,295	- - CDS="CDS;ID=CDS_FBgn0003248:1_198;Name=Rh2-cds;Parent=FBtr0083697;parent_type=mRNA" - - - - -	14515	14,725,207 – 14,725,295	-	12	97	70.10	-1.21	0.39	0.598675
10558	dm3.chr3R	14,729,629 – 14,729,734	- - - - - - - -	14516	14,729,629 – 14,729,734	-	11	115	60.39	-1.20	0.41	0.951258
10559	dm3.chr3R	14,739,424 – 14,739,517	- - - - - - - -	14517	14,739,424 – 14,739,517	-	5	94	82.81	-1.59	0.72	0.617473
10560	dm3.chr3R	14,740,988 – 14,741,087	- - - - - - - -	14518	14,740,988 – 14,741,087	+	11	111	59.52	-1.27	0.30	0.653674
10561	dm3.chr3R	14,744,119 – 14,744,215	- - - intron="intron;ID=intron_FBgn0038661:1_FBgn0038661:4;Name=Xrp1-in;Parent=FBtr0083700;parent_type=mRNA" - - - -	14519	14,744,119 – 14,744,215	+	12	108	58.37	-1.69	0.52	0.999009
10561	dm3.chr3R	14,744,119 – 14,744,215		14520	14,744,119 – 14,744,215	-	12	108	58.37	-1.09	0.37	0.877311
10562	dm3.chr3R	14,745,375 – 14,745,484	- - - intron="intron;ID=intron_FBgn0038661:4_FBgn0038661:5;Name=Xrp1-in;Parent=FBtr0083700,FBtr0083701;parent_type=mRNA" - - - -	14521	14,745,375 – 14,745,484	+	4	113	85.45	-3.92	0.82	0.998836
10563	dm3.chr3R	14,746,118 – 14,746,211	- - - - - - - -	14522	14,746,118 – 14,746,211	+	8	102	80.32	-1.07	0.76	0.581134
10564	dm3.chr3R	14,754,866 – 14,754,935	- - - - - - - -	14523	14,754,866 – 14,754,935	-	7	69	62.53	-1.38	0.34	0.806737
10565	dm3.chr3R	14,757,131 – 14,757,203	- - - - - - - -	14524	14,757,131 – 14,757,203	-	3	74	81.82	-1.06	0.84	0.512523
10566	dm3.chr3R	14,767,661 – 14,767,753	- - - intron="intron;ID=intron_FBgn0261262:1_FBgn0261262:2;Name=CG42613-in;Parent=FBtr0304688,FBtr0304685,FBtr0304687;parent_type=mRNA" - - - -	14525	14,767,661 – 14,767,753	-	3	93	80.97	-2.11	0.66	0.720742
10567	dm3.chr3R	14,782,060 – 14,782,156	- - - intron="intron;ID=intron_FBgn0261262:4_FBgn0261262:5;Name=CG42613-in;Parent=FBtr0304686;parent_type=mRNA" - - - -	14526	14,782,060 – 14,782,156	-	7	106	81.78	-1.73	0.62	0.524318
10568	dm3.chr3R	14,784,258 – 14,784,313	- - - - - - - -	14527	14,784,258 – 14,784,313	+	13	55	88.70	-0.98	0.88	0.549300
10569	dm3.chr3R	14,792,300 – 14,792,413	- - - intron="intron;ID=intron_FBgn0261262:5_FBgn0261262:7;Name=CG42613-in;Parent=FBtr0304686;parent_type=mRNA" - - - -	14528	14,792,300 – 14,792,413	+	4	119	69.33	-1.75	0.65	0.972291
10570	dm3.chr3R	14,794,225 – 14,794,319	- - - intron="intron;ID=intron_FBgn0261262:5_FBgn0261262:7;Name=CG42613-in;Parent=FBtr0304686;parent_type=mRNA" - - - -	14529	14,794,225 – 14,794,319	+	9	111	71.00	-1.66	0.69	0.992522
10571	dm3.chr3R	14,796,076 – 14,796,167	- - - intron="intron;ID=intron_FBgn0261262:10_FBgn0261262:11;Name=CG42613-in;Parent=FBtr0304688,FBtr0304685,FBtr0304686,FBtr0304687;parent_type=mRNA" - - - -	14530	14,796,076 – 14,796,167	+	7	96	73.50	-2.84	0.67	0.998835
10571	dm3.chr3R	14,796,076 – 14,796,167		14531	14,796,076 – 14,796,167	-	7	96	73.50	-2.35	0.58	0.991350
10572	dm3.chr3R	14,796,639 – 14,796,713	- - - intron="intron;ID=intron_FBgn0261262:11_FBgn0261262:12;Name=CG42613-in;Parent=FBtr0304688,FBtr0304685,FBtr0304686,FBtr0304687;parent_type=mRNA" - - - -	14532	14,796,639 – 14,796,713	+	6	76	67.63	-5.45	0.43	0.999967
10572	dm3.chr3R	14,796,639 – 14,796,713		14533	14,796,639 – 14,796,713	-	6	76	67.63	-4.23	0.14	0.987588
10573	dm3.chr3R	14,814,809 – 14,814,901	- - - intron="intron;ID=intron_FBgn0026239:1_FBgn0026239:2;Name=gukh-in;Parent=FBtr0089767,FBtr0089768,FBtr0100317,FBtr0112924;parent_type=mRNA" - - - -	14534	14,814,809 – 14,814,901	+	6	101	67.41	-1.91	0.47	0.986771
10573	dm3.chr3R	14,814,809 – 14,814,901		14535	14,814,809 – 14,814,901	-	6	101	67.41	-1.95	0.29	0.650854
10574	dm3.chr3R	14,818,460 – 14,818,596	- - - intron="intron;ID=intron_FBgn0026239:1_FBgn0026239:2;Name=gukh-in;Parent=FBtr0089767,FBtr0089768,FBtr0100317,FBtr0112924;parent_type=mRNA" - - - -	14536	14,818,460 – 14,818,557	-	5	97	88.72	-1.91	0.97	0.977310
				14537	14,818,482 – 14,818,596	+	5	114	90.69	-1.27	0.93	0.732764
				14538	14,818,482 – 14,818,596	-	5	114	90.69	-1.34	0.93	0.775164
10575	dm3.chr3R	14,826,313 – 14,826,405	- - - intron="intron;ID=intron_FBgn0026239:1_FBgn0026239:2;Name=gukh-in;Parent=FBtr0089767,FBtr0089768,FBtr0100317,FBtr0112924;parent_type=mRNA" - - - -	14539	14,826,313 – 14,826,405	+	11	107	64.87	-1.36	0.34	0.670611
10576	dm3.chr3R	14,835,657 – 14,835,769	- - - intron="intron;ID=intron_FBgn0026239:2_FBgn0026239:3;Name=gukh-in;Parent=FBtr0089767,FBtr0089768,FBtr0100317,FBtr0112924;parent_type=mRNA" - - - -	14540	14,835,657 – 14,835,769	+	9	112	74.42	-1.20	0.52	0.500000
10576	dm3.chr3R	14,835,657 – 14,835,769		14541	14,835,657 – 14,835,769	-	9	112	74.42	-1.17	0.62	0.795452
10577	dm3.chr3R	14,838,159 – 14,838,250	- - - intron="intron;ID=intron_FBgn0026239:3_FBgn0026239:4;Name=gukh-in;Parent=FBtr0089767,FBtr0089768,FBtr0100317,FBtr0112924;parent_type=mRNA" - - - -	14542	14,838,159 – 14,838,250	-	7	98	71.26	-1.68	0.40	0.662080
10578	dm3.chr3R	14,861,550 – 14,861,641	- - - - - - - -	14543	14,861,550 – 14,861,641	+	7	100	78.50	-1.96	0.57	0.905063
10578	dm3.chr3R	14,861,550 – 14,861,641	- - - - - - - -	14544	14,861,550 – 14,861,641	-	7	100	78.50	-2.70	0.48	0.972438
10579	dm3.chr3R	14,861,854 – 14,861,955	- - - - - - - -	14545	14,861,854 – 14,861,955	+	6	101	72.99	-1.08	0.53	0.592962
10580	dm3.chr3R	14,870,155 – 14,870,253	- - - - - - - -	14546	14,870,155 – 14,870,253	+	12	107	70.28	-1.90	0.50	0.989146
10581	dm3.chr3R	14,873,046 – 14,873,154	- - CDS="CDS;ID=CDS_FBgn0004876:2_256;Name=cdi-cds;Parent=FBtr0083716;parent_type=mRNA" - - - - -	14547	14,873,046 – 14,873,154	+	13	121	61.52	-2.16	0.22	0.863666
10582	dm3.chr3R	14,876,621 – 14,876,673	- - - intron="intron;ID=intron_FBgn0004876:9_FBgn0004876:8;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14548	14,876,621 – 14,876,673	+	3	52	94.84	-2.19	0.82	0.746627
10582	dm3.chr3R	14,876,621 – 14,876,673		14549	14,876,621 – 14,876,673	-	3	52	94.84	-2.10	0.93	0.942882
10583	dm3.chr3R	14,877,945 – 14,878,075	- - - intron="intron;ID=intron_FBgn0004876:9_FBgn0004876:8;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14550	14,877,945 – 14,878,054	+	8	112	74.80	-1.34	0.55	0.682553
10583	dm3.chr3R	14,877,945 – 14,878,075		14551	14,877,977 – 14,878,075	+	6	99	93.62	-2.09	0.86	0.886563
10584	dm3.chr3R	14,878,176 – 14,878,271	- - - intron="intron;ID=intron_FBgn0004876:9_FBgn0004876:8;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14552	14,878,176 – 14,878,271	+	5	101	70.60	-0.84	0.67	0.534520
10585	dm3.chr3R	14,879,649 – 14,879,741	- - - intron="intron;ID=intron_FBgn0004876:9_FBgn0004876:8;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14553	14,879,649 – 14,879,741	-	6	98	77.02	-1.38	0.58	0.598743
10586	dm3.chr3R	14,881,990 – 14,882,095	- - - intron="intron;ID=intron_FBgn0004876:9_FBgn0004876:8;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14554	14,881,990 – 14,882,095	-	5	109	96.64	-1.58	0.93	0.765113
10587	dm3.chr3R	14,882,175 – 14,882,277	- - - intron="intron;ID=intron_FBgn0004876:9_FBgn0004876:8;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14555	14,882,175 – 14,882,277	+	5	103	88.46	-2.39	0.74	0.892825
10588	dm3.chr3R	14,884,613 – 14,884,717	- - - intron="intron;ID=intron_FBgn0004876:9_FBgn0004876:8;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14556	14,884,613 – 14,884,717	-	7	104	75.33	-2.27	0.46	0.947528
10589	dm3.chr3R	14,890,550 – 14,890,645	- - - intron="intron;ID=intron_FBgn0004876:10_FBgn0004876:9;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14557	14,890,550 – 14,890,645	-	7	102	76.81	-1.24	0.71	0.778974
10590	dm3.chr3R	14,895,400 – 14,895,505	- - - intron="intron;ID=intron_FBgn0004876:10_FBgn0004876:9;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14558	14,895,400 – 14,895,505	+	7	117	69.56	-2.68	0.39	0.993674
10590	dm3.chr3R	14,895,400 – 14,895,505		14559	14,895,400 – 14,895,505	-	7	117	69.56	-2.56	0.47	0.997580
10591	dm3.chr3R	14,904,319 – 14,904,415	- - - intron="intron;ID=intron_FBgn0004876:10_FBgn0004876:9;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14560	14,904,319 – 14,904,415	+	8	103	79.76	-1.58	0.68	0.801764
10592	dm3.chr3R	14,911,229 – 14,911,335	- - - intron="intron;ID=intron_FBgn0004876:10_FBgn0004876:9;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14561	14,911,229 – 14,911,335	+	5	112	81.58	-2.44	0.57	0.889598
10592	dm3.chr3R	14,911,229 – 14,911,335		14562	14,911,229 – 14,911,335	-	5	112	81.58	-2.87	0.68	0.991080
10593	dm3.chr3R	14,912,824 – 14,912,939	- - - intron="intron;ID=intron_FBgn0004876:10_FBgn0004876:9;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14563	14,912,824 – 14,912,939	-	5	119	87.44	-2.15	0.67	0.662148
10594	dm3.chr3R	14,917,855 – 14,918,023	- - - intron="intron;ID=intron_FBgn0004876:11_FBgn0004876:10;Name=cdi-in;Parent=FBtr0083716,FBtr0305321;parent_type=mRNA" - - - -	14564	14,917,855 – 14,918,023	-	5	173	93.83	-2.75	0.89	0.984847
10595	dm3.chr3R	14,926,530 – 14,926,645	- - - intron="intron;ID=intron_FBgn0038679:1_FBgn0038679:2;Name=CG6040-in;Parent=FBtr0083729;parent_type=mRNA" - - - -	14565	14,926,530 – 14,926,627	-	7	99	70.45	-1.72	0.42	0.805407
10595	dm3.chr3R	14,926,530 – 14,926,645		14566	14,926,554 – 14,926,645	-	8	111	65.61	-2.09	0.26	0.584161
10596	dm3.chr3R	14,934,120 – 14,934,211	- - - intron="intron;ID=intron_FBgn0038679:1_FBgn0038679:2;Name=CG6040-in;Parent=FBtr0083729;parent_type=mRNA" - - - -	14567	14,934,120 – 14,934,211	-	5	91	96.26	-1.78	0.88	0.694125
10597	dm3.chr3R	14,947,781 – 14,947,880	- - - intron="intron;ID=intron_FBgn0038679:2_FBgn0038679:3;Name=CG6040-in;Parent=FBtr0083729;parent_type=mRNA" - - - -	14568	14,947,781 – 14,947,880	+	7	108	71.15	-1.16	0.58	0.815987
10598	dm3.chr3R	14,950,483 – 14,950,578	- - CDS="CDS;ID=CDS_FBgn0038679:4_238;Name=CG6040-cds;Parent=FBtr0304715;parent_type=mRNA" - - - - -	14569	14,950,483 – 14,950,578	+	6	107	84.98	-2.37	0.73	0.949014
10599	dm3.chr3R	14,952,782 – 14,952,885	- - CDS="CDS;ID=CDS_FBgn0038679:4_238;Name=CG6040-cds;Parent=FBtr0304715;parent_type=mRNA" - - - - -	14570	14,952,782 – 14,952,885	+	12	115	73.89	-1.51	0.42	0.555048
10600	dm3.chr3R	14,953,368 – 14,953,459	- - - intron="intron;ID=intron_FBgn0038679:4_FBgn0038679:5;Name=CG6040-in;Parent=FBtr0304715;parent_type=mRNA" - - - -	14571	14,953,368 – 14,953,459	-	6	96	92.05	-1.16	0.99	0.860375
10601	dm3.chr3R	14,954,973 – 14,955,074	- - CDS="CDS;ID=CDS_FBgn0038679:5_238;Name=CG6040-cds;Parent=FBtr0304715;parent_type=mRNA" - - - - -	14572	14,954,973 – 14,955,074	+	12	111	74.40	-1.56	0.46	0.794658
10602	dm3.chr3R	14,958,425 – 14,958,525	- - CDS="CDS;ID=CDS_FBgn0038680:1_243;Name=Cyp12a5-cds;Parent=FBtr0083730;parent_type=mRNA" - - - - -	14573	14,958,425 – 14,958,525	-	6	104	54.57	-2.37	0.15	0.881839
10603	dm3.chr3R	14,969,265 – 14,969,381	- - - intron="intron;ID=intron_FBgn0261285:4_FBgn0261285:3;Name=Ppcs-in;Parent=FBtr0083752;parent_type=mRNA" - - - -	14574	14,969,265 – 14,969,381	-	6	120	84.32	-1.61	0.70	0.571715
10604	dm3.chr3R	14,979,969 – 14,980,127	- - - - - - - -	14575	14,979,969 – 14,980,061	-	6	103	73.87	-2.28	0.45	0.905353
				14576	14,979,999 – 14,980,101	-	6	109	68.59	-1.57	0.38	0.583234
				14577	14,980,008 – 14,980,127	+	6	120	73.26	-1.98	0.43	0.843962
				14578	14,980,008 – 14,980,127	-	6	120	73.26	-2.28	0.47	0.970013
10605	dm3.chr3R	15,010,911 – 15,011,034	- - - intron="intron;ID=intron_CG31475:1_CG31475:2;Name=CG31475-in;Parent=FBtr0083735;parent_type=mRNA" - - - -	14579	15,010,911 – 15,011,006	-	5	95	88.23	-1.49	0.81	0.521818
10605	dm3.chr3R	15,010,911 – 15,011,034		14580	15,010,941 – 15,011,034	-	5	93	86.64	-1.97	0.77	0.820042
10606	dm3.chr3R	15,012,606 – 15,012,696	- - - intron="intron;ID=intron_CG31475:1_CG31475:2;Name=CG31475-in;Parent=FBtr0083735;parent_type=mRNA" - - - -	14581	15,012,606 – 15,012,696	+	8	103	75.08	-0.76	0.73	0.681983
10607	dm3.chr3R	15,023,370 – 15,023,551	- - - intron="intron;ID=intron_CG31475:2_CG31475:3;Name=CG31475-in;Parent=FBtr0083735;parent_type=mRNA" - - - -	14582	15,023,370 – 15,023,483	+	8	119	76.01	-1.62	0.45	0.500000
				14583	15,023,408 – 15,023,512	+	7	117	67.11	-1.26	0.48	0.792284
				14584	15,023,443 – 15,023,551	+	7	117	74.53	-1.23	0.64	0.747303
				14585	15,023,443 – 15,023,551	-	7	117	74.53	-1.66	0.64	0.934690
10608	dm3.chr3R	15,024,111 – 15,024,175	- - - intron="intron;ID=intron_CG31475:2_CG31475:3;Name=CG31475-in;Parent=FBtr0083735;parent_type=mRNA" - - - -	14586	15,024,111 – 15,024,175	+	6	64	92.81	-1.75	0.80	0.524242
10609	dm3.chr3R	15,030,148 – 15,030,293	- - - - - - - -	14587	15,030,148 – 15,030,253	+	3	108	95.37	-1.18	0.98	0.753834
10609	dm3.chr3R	15,030,148 – 15,030,293	- - - - - - - -	14588	15,030,186 – 15,030,293	+	3	110	95.45	-5.82	0.98	0.997973
10610	dm3.chr3R	15,031,547 – 15,031,688	- - - - - - - -	14589	15,031,547 – 15,031,688	-	11	147	77.09	-1.28	0.50	0.540915
10611	dm3.chr3R	15,045,588 – 15,045,682	- - - intron="intron;ID=intron_CG5269:2_CG5269:3;Name=vib-in;Parent=FBtr0083745;parent_type=mRNA" - - - -	14590	15,045,588 – 15,045,682	+	3	94	77.99	-1.66	0.76	0.781376
10612	dm3.chr3R	15,047,504 – 15,047,594	- - - intron="intron;ID=intron_CG5269:2_CG5269:3;Name=vib-in;Parent=FBtr0083745;parent_type=mRNA" - - - -	14591	15,047,504 – 15,047,594	-	5	90	89.35	-1.36	0.87	0.627211
10613	dm3.chr3R	15,077,100 – 15,077,202	- - - - - - - -	14592	15,077,100 – 15,077,202	-	10	108	96.50	-1.62	0.95	0.871521
10614	dm3.chr3R	15,080,491 – 15,080,542	- - - - - - - -	14593	15,080,491 – 15,080,542	+	6	51	77.12	-1.21	0.67	0.742537
10615	dm3.chr3R	15,087,794 – 15,087,940	- - - - - - - -	14594	15,087,794 – 15,087,902	+	8	115	75.21	-2.10	0.53	0.958013
				14595	15,087,794 – 15,087,902	-	8	115	75.21	-2.01	0.51	0.926805
				14596	15,087,834 – 15,087,940	+	8	119	83.15	-2.95	0.49	0.935860
				14597	15,087,834 – 15,087,940	-	8	119	83.15	-1.83	0.61	0.556938
10616	dm3.chr3R	15,102,025 – 15,102,120	- - - - - - - -	14598	15,102,025 – 15,102,120	-	4	116	66.72	-1.16	0.61	0.653610
10617	dm3.chr3R	15,107,893 – 15,108,006	- - - - - - - -	14599	15,107,893 – 15,108,000	-	10	115	78.79	-3.06	0.38	0.968035
10617	dm3.chr3R	15,107,893 – 15,108,006	- - - - - - - -	14600	15,107,899 – 15,108,006	-	9	115	77.56	-2.50	0.39	0.858108
10618	dm3.chr3R	15,113,646 – 15,113,742	- - - - - - - -	14601	15,113,646 – 15,113,742	+	10	111	74.91	-1.72	0.67	0.976147
10618	dm3.chr3R	15,113,646 – 15,113,742	- - - - - - - -	14602	15,113,646 – 15,113,742	-	10	111	74.91	-2.07	0.53	0.964791
10619	dm3.chr3R	15,120,837 – 15,120,973	- - - - - - - -	14603	15,120,837 – 15,120,942	-	10	105	90.36	-2.56	0.78	0.968865
				14604	15,120,871 – 15,120,973	+	10	108	81.87	-1.36	0.66	0.566013
				14605	15,120,871 – 15,120,973	-	10	108	81.87	-1.91	0.68	0.926831
10620	dm3.chr3R	15,123,420 – 15,123,477	- - - - - - - -	14606	15,123,420 – 15,123,477	-	6	58	80.12	-1.68	0.65	0.814948
10621	dm3.chr3R	15,127,513 – 15,127,611	- - - - - - - -	14607	15,127,513 – 15,127,611	+	12	115	68.24	-1.00	0.43	0.678547
10622	dm3.chr3R	15,130,482 – 15,130,591	- - - - - - - -	14608	15,130,482 – 15,130,591	-	7	119	64.76	-1.50	0.33	0.576300
10623	dm3.chr3R	15,139,842 – 15,139,934	- - - intron="intron;ID=intron_FBgn0000463:6_FBgn0000463:5;Name=Dl-in;Parent=FBtr0083739,FBtr0083740,FBtr0304658;parent_type=mRNA" - - - -	14609	15,139,842 – 15,139,934	-	9	105	81.72	-2.84	0.52	0.966714
10624	dm3.chr3R	15,151,730 – 15,151,832	- - - - - - - -	14610	15,151,730 – 15,151,832	+	5	102	95.88	-2.99	0.93	0.993035
10625	dm3.chr3R	15,152,467 – 15,152,528	- - - - - - - -	14611	15,152,467 – 15,152,528	+	5	70	65.37	-1.59	0.32	0.505088
10625	dm3.chr3R	15,152,467 – 15,152,528	- - - - - - - -	14612	15,152,467 – 15,152,528	-	5	70	65.37	-1.95	0.48	0.990975
10626	dm3.chr3R	15,152,742 – 15,152,834	FBnoncoding="pre_miRNA;ID=FBtr0304363;Name=mir-997-RM;Parent=FBgn0262262;Alias=CR42969-RM;Dbxref=FlyBase_Annotation_IDs:CR42969-RM,miRBase:MI0005859" - - - - - - "mirBase_v16=dme-mir-997\|3.1e-35"	14613	15,152,742 – 15,152,834	+	4	97	76.90	-1.98	0.78	0.973083
10626	dm3.chr3R	15,152,742 – 15,152,834		14614	15,152,742 – 15,152,834	-	4	97	76.90	-1.50	0.87	0.945270
10627	dm3.chr3R	15,161,540 – 15,161,686	- - - - - - - -	14615	15,161,540 – 15,161,686	-	5	146	77.19	-2.14	0.45	0.704225
10628	dm3.chr3R	15,162,228 – 15,162,325	- - - - - - - -	14616	15,162,228 – 15,162,325	+	12	107	75.11	-1.55	0.52	0.917443
10629	dm3.chr3R	15,169,794 – 15,169,888	- - - - - - - -	14617	15,169,794 – 15,169,888	+	10	99	70.81	-1.59	0.63	0.989978
10629	dm3.chr3R	15,169,794 – 15,169,888	- - - - - - - -	14618	15,169,794 – 15,169,888	-	10	99	70.81	-1.61	0.45	0.897440
10630	dm3.chr3R	15,189,217 – 15,189,317	- - - - - - - -	14619	15,189,217 – 15,189,317	+	12	119	73.46	-2.08	0.64	0.996575
10630	dm3.chr3R	15,189,217 – 15,189,317	- - - - - - - -	14620	15,189,217 – 15,189,317	-	12	119	73.46	-2.12	0.50	0.986161
10631	dm3.chr3R	15,197,581 – 15,197,635	- - - intron="intron;ID=intron_CG31212:12_CG31212:13;Name=Ino80-in;Parent=FBtr0083771;parent_type=mRNA" - - - -	14621	15,197,581 – 15,197,635	+	4	54	93.52	-1.30	0.90	0.514801
10632	dm3.chr3R	15,199,017 – 15,199,111	- - - intron="intron;ID=intron_CG31212:12_CG31212:13;Name=Ino80-in;Parent=FBtr0083771;parent_type=mRNA" - - - -	14622	15,199,017 – 15,199,111	+	12	120	80.51	-1.25	0.75	0.740598
10633	dm3.chr3R	15,239,265 – 15,239,345	- - - intron="intron;ID=intron_CG31221:1_CG31221:3;Name=CG31221-in;Parent=FBtr0083762;parent_type=mRNA" - - - -	14623	15,239,265 – 15,239,345	+	6	81	69.88	-2.21	0.39	0.952573
10634	dm3.chr3R	15,245,784 – 15,245,884	- - - intron="intron;ID=intron_CG31221:4_CG31221:5;Name=CG31221-in;Parent=FBtr0083763;parent_type=mRNA" - - - -	14624	15,245,784 – 15,245,884	-	3	109	76.32	-2.93	0.42	0.844444
10635	dm3.chr3R	15,258,318 – 15,258,413	- - - intron="intron;ID=intron_CG31221:4_CG31221:5;Name=CG31221-in;Parent=FBtr0083763;parent_type=mRNA" - - - -	14625	15,258,318 – 15,258,413	-	11	115	60.89	-2.11	0.21	0.760817
10636	dm3.chr3R	15,285,446 – 15,285,544	- - - - - - - -	14626	15,285,446 – 15,285,544	+	11	103	73.46	-4.24	0.85	0.999620
10636	dm3.chr3R	15,285,446 – 15,285,544	- - - - - - - -	14627	15,285,446 – 15,285,544	-	11	103	73.46	-2.49	0.75	0.999128
10637	dm3.chr3R	15,307,299 – 15,307,408	- - CDS="CDS;ID=CDS_FBgn0024242:8_94;Name=Dys-cds;Parent=FBtr0083764,FBtr0083765,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - - -	14628	15,307,299 – 15,307,408	+	13	110	65.60	-1.08	0.35	0.685531
10638	dm3.chr3R	15,323,793 – 15,323,889	- - - intron="intron;ID=intron_FBgn0024242:18_FBgn0024242:20;Name=Dys-in;Parent=FBtr0083764,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - -	14629	15,323,793 – 15,323,889	-	7	110	65.94	-1.85	0.40	0.907335
10639	dm3.chr3R	15,323,982 – 15,324,108	- - - intron="intron;ID=intron_FBgn0024242:18_FBgn0024242:20;Name=Dys-in;Parent=FBtr0083764,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - -	14630	15,323,982 – 15,324,089	-	7	107	69.40	-2.03	0.38	0.940402
10639	dm3.chr3R	15,323,982 – 15,324,108		14631	15,323,992 – 15,324,108	-	5	116	83.19	-3.66	0.51	0.993428
10640	dm3.chr3R	15,330,523 – 15,330,646	- - CDS="CDS;ID=CDS_FBgn0024242:19_94;Name=Dys-cds;Parent=FBtr0083766;parent_type=mRNA" intron="intron;ID=intron_FBgn0024242:18_FBgn0024242:20;Name=Dys-in;Parent=FBtr0083764,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - -	14632	15,330,523 – 15,330,613	+	12	108	76.59	-1.70	0.66	0.962903
10640	dm3.chr3R	15,330,523 – 15,330,646		14633	15,330,556 – 15,330,646	+	12	114	74.96	-1.80	0.58	0.941290
10641	dm3.chr3R	15,334,638 – 15,334,742	- - - intron="intron;ID=intron_FBgn0024242:25_FBgn0024242:28;Name=Dys-in;Parent=FBtr0083764,FBtr0083765,FBtr0083766,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - -	14634	15,334,638 – 15,334,742	-	10	116	58.71	-2.23	0.24	0.962951
10642	dm3.chr3R	15,337,785 – 15,337,888	- - - intron="intron;ID=intron_FBgn0024242:26_FBgn0024242:27;Name=Dys-in;Parent=FBtr0110915;parent_type=mRNA" - - - -	14635	15,337,785 – 15,337,888	-	8	121	66.63	-0.81	0.49	0.529432
10643	dm3.chr3R	15,342,802 – 15,342,902	- - - intron="intron;ID=intron_FBgn0024242:26_FBgn0024242:27;Name=Dys-in;Parent=FBtr0110915;parent_type=mRNA" - - - -	14636	15,342,802 – 15,342,902	+	6	106	83.66	-1.61	0.68	0.560582
10643	dm3.chr3R	15,342,802 – 15,342,902		14637	15,342,802 – 15,342,902	-	6	106	83.66	-1.69	0.67	0.600357
10644	dm3.chr3R	15,346,006 – 15,346,099	- - - intron="intron;ID=intron_FBgn0024242:26_FBgn0024242:27;Name=Dys-in;Parent=FBtr0110915;parent_type=mRNA" - - - -	14638	15,346,006 – 15,346,099	+	8	107	72.65	-0.90	0.65	0.801520
10645	dm3.chr3R	15,358,352 – 15,358,450	- - - intron="intron;ID=intron_FBgn0024242:27_FBgn0024242:28;Name=Dys-in;Parent=FBtr0110915;parent_type=mRNA" - - - -	14639	15,358,352 – 15,358,450	-	10	114	71.01	-1.78	0.34	0.589141
10646	dm3.chr3R	15,359,131 – 15,359,190	- - - intron="intron;ID=intron_FBgn0024242:27_FBgn0024242:28;Name=Dys-in;Parent=FBtr0110915;parent_type=mRNA" - - - -	14640	15,359,131 – 15,359,190	+	6	60	76.29	-1.80	0.59	0.938194
10646	dm3.chr3R	15,359,131 – 15,359,190		14641	15,359,131 – 15,359,190	-	6	60	76.29	-1.79	0.50	0.796098
10647	dm3.chr3R	15,360,312 – 15,360,426	- - - intron="intron;ID=intron_FBgn0024242:27_FBgn0024242:28;Name=Dys-in;Parent=FBtr0110915;parent_type=mRNA" - - - -	14642	15,360,312 – 15,360,426	+	5	116	79.82	-1.57	0.66	0.603549
10647	dm3.chr3R	15,360,312 – 15,360,426		14643	15,360,312 – 15,360,426	-	5	116	79.82	-2.09	0.64	0.890929
10648	dm3.chr3R	15,369,287 – 15,369,382	- - - intron="intron;ID=intron_FBgn0024242:27_FBgn0024242:28;Name=Dys-in;Parent=FBtr0110915;parent_type=mRNA" - - - -	14644	15,369,287 – 15,369,382	+	4	95	89.65	-1.32	0.88	0.598182
10648	dm3.chr3R	15,369,287 – 15,369,382		14645	15,369,287 – 15,369,382	-	4	95	89.65	-1.53	0.84	0.597972
10649	dm3.chr3R	15,377,786 – 15,377,876	- - - intron="intron;ID=intron_FBgn0024242:27_FBgn0024242:28;Name=Dys-in;Parent=FBtr0110915;parent_type=mRNA" - - - -	14646	15,377,786 – 15,377,876	-	10	111	71.73	-2.57	0.25	0.647625
10650	dm3.chr3R	15,386,906 – 15,386,997	- - - intron="intron;ID=intron_FBgn0024242:30_FBgn0024242:31;Name=Dys-in;Parent=FBtr0083764,FBtr0083765,FBtr0083766,FBtr0110915,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - -	14647	15,386,906 – 15,386,997	-	11	120	69.75	-1.06	0.54	0.758730
10651	dm3.chr3R	15,388,668 – 15,388,782	- - - intron="intron;ID=intron_FBgn0024242:31_FBgn0024242:34;Name=Dys-in;Parent=FBtr0083764,FBtr0083765,FBtr0083766,FBtr0110915,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - -	14648	15,388,668 – 15,388,782	+	5	116	69.08	-1.25	0.48	0.669190
10652	dm3.chr3R	15,389,986 – 15,390,089	- - - intron="intron;ID=intron_FBgn0024242:31_FBgn0024242:34;Name=Dys-in;Parent=FBtr0083764,FBtr0083765,FBtr0083766,FBtr0110915,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - -	14649	15,389,986 – 15,390,089	-	6	106	78.97	-1.59	0.60	0.712118
10653	dm3.chr3R	15,393,637 – 15,393,717	- - - intron="intron;ID=intron_FBgn0024242:31_FBgn0024242:34;Name=Dys-in;Parent=FBtr0083764,FBtr0083765,FBtr0083766,FBtr0110915,FBtr0110917,FBtr0110918,FBtr0110919;parent_type=mRNA" - - - -	14650	15,393,637 – 15,393,717	+	4	80	76.67	-1.86	0.75	0.959302
10654	dm3.chr3R	15,402,122 – 15,402,214	- - - intron="intron;ID=intron_FBgn0024242:32_FBgn0024242:33;Name=Dys-in;Parent=FBtr0110916;parent_type=mRNA" - - - -	14651	15,402,122 – 15,402,214	-	5	92	96.50	-2.06	0.88	0.846379
10655	dm3.chr3R	15,412,914 – 15,413,016	- - - intron="intron;ID=intron_FBgn0024242:33_FBgn0024242:34;Name=Dys-in;Parent=FBtr0110916;parent_type=mRNA" - - - -	14652	15,412,914 – 15,413,016	+	6	117	64.60	-1.57	0.35	0.659483
10656	dm3.chr3R	15,419,736 – 15,419,832	- - CDS="CDS;ID=CDS_FBgn0024242:42_94;Name=Dys-cds;Parent=FBtr0110919;parent_type=mRNA" - - - - -	14653	15,419,736 – 15,419,832	-	10	105	75.49	-1.58	0.56	0.845332
10657	dm3.chr3R	15,444,799 – 15,444,900	- - CDS="CDS;ID=CDS_FBgn0038720:6_172;Name=CG6231-cds;Parent=FBtr0083807,FBtr0083808,FBtr0083809,FBtr0083810;parent_type=mRNA" - - - - -	14654	15,444,799 – 15,444,900	-	12	120	79.38	-1.67	0.51	0.543528
10658	dm3.chr3R	15,448,443 – 15,448,540	- - - - - - - -	14655	15,448,443 – 15,448,540	-	7	97	75.26	-2.50	0.30	0.749463
10659	dm3.chr3R	15,451,134 – 15,451,235	- - - - - - - -	14656	15,451,134 – 15,451,235	+	6	108	77.20	-1.58	0.54	0.598716
10660	dm3.chr3R	15,452,041 – 15,452,136	- - - - - - - -	14657	15,452,041 – 15,452,136	-	8	120	71.52	-1.68	0.46	0.697911
10661	dm3.chr3R	15,454,140 – 15,454,250	- - - - - - - -	14658	15,454,140 – 15,454,250	+	5	110	81.30	-2.06	0.69	0.919652
10662	dm3.chr3R	15,456,737 – 15,456,833	- - - - - - - -	14659	15,456,737 – 15,456,833	-	4	107	67.30	-2.04	0.49	0.970304
10663	dm3.chr3R	15,457,355 – 15,457,473	- - - - - - - -	14660	15,457,355 – 15,457,473	-	6	119	70.87	-1.79	0.38	0.617690
10664	dm3.chr3R	15,458,093 – 15,458,189	- - - - - - - -	14661	15,458,093 – 15,458,189	-	5	96	83.00	-1.70	0.68	0.649760
10665	dm3.chr3R	15,458,567 – 15,458,733	- - - - - - - -	14662	15,458,567 – 15,458,659	+	5	94	87.79	-2.26	0.72	0.850559
				14663	15,458,567 – 15,458,659	-	5	94	87.79	-2.38	0.87	0.981385
				14664	15,458,635 – 15,458,733	+	6	117	70.79	-1.10	0.55	0.642033
10666	dm3.chr3R	15,463,518 – 15,463,610	- - - intron="intron;ID=intron_FBgn0038721:9_FBgn0038721:8;Name=CG16718-in;Parent=FBtr0083805,FBtr0083806,FBtr0302492;parent_type=mRNA" - - - -	14665	15,463,518 – 15,463,610	-	9	100	62.39	-1.61	0.33	0.932629
10667	dm3.chr3R	15,478,532 – 15,478,640	- - - - - - - -	14666	15,478,532 – 15,478,640	+	11	115	64.67	-0.43	0.67	0.912235
10668	dm3.chr3R	15,508,063 – 15,508,157	- - - intron="intron;ID=intron_CG31216:1_CG31216:2;Name=Naam-in;Parent=FBtr0083786;parent_type=mRNA" - - - -	14667	15,508,063 – 15,508,157	-	7	100	78.83	-1.83	0.76	0.971866
10669	dm3.chr3R	15,509,317 – 15,509,408	- - - intron="intron;ID=intron_CG31216:1_CG31216:2;Name=Naam-in;Parent=FBtr0083786;parent_type=mRNA" - - - -	14668	15,509,317 – 15,509,408	-	12	113	72.26	-1.51	0.46	0.741819
10670	dm3.chr3R	15,511,362 – 15,511,428	- - - intron="intron;ID=intron_CG31216:1_CG31216:2;Name=Naam-in;Parent=FBtr0083786;parent_type=mRNA" - - - -	14669	15,511,362 – 15,511,428	+	5	66	90.97	-1.24	0.93	0.720330
10671	dm3.chr3R	15,512,595 – 15,512,693	- - - intron="intron;ID=intron_CG31216:1_CG31216:2;Name=Naam-in;Parent=FBtr0083786;parent_type=mRNA" - - - -	14670	15,512,595 – 15,512,693	+	7	105	67.59	-1.24	0.39	0.517804
10672	dm3.chr3R	15,513,476 – 15,513,576	- - - intron="intron;ID=intron_CG31216:2_CG31216:3;Name=Naam-in;Parent=FBtr0083786;parent_type=mRNA" - - - -	14671	15,513,476 – 15,513,576	+	4	104	77.40	-1.75	0.61	0.749025
10673	dm3.chr3R	15,526,206 – 15,526,307	- - - - - - - -	14672	15,526,206 – 15,526,307	+	6	115	83.84	-1.60	0.75	0.736760
10674	dm3.chr3R	15,532,149 – 15,532,230	- - - - - - - -	14673	15,532,149 – 15,532,230	-	3	84	45.38	-1.03	0.40	0.871532
10675	dm3.chr3R	15,539,757 – 15,539,861	- - - - - - - -	14674	15,539,757 – 15,539,861	-	7	105	70.34	-0.99	0.51	0.527670
10676	dm3.chr3R	15,560,274 – 15,560,368	- - - intron="intron;ID=intron_FBgn0024963:1_FBgn0024963:2;Name=GluClalpha-in;Parent=FBtr0100127,FBtr0083788,FBtr0083787,FBtr0100128,FBtr0301378,FBtr0301379,FBtr0301380;parent_type=mRNA" - - - -	14675	15,560,274 – 15,560,368	+	8	104	89.97	-0.99	0.93	0.603704
10677	dm3.chr3R	15,579,088 – 15,579,179	- - - intron="intron;ID=intron_FBgn0024963:2_FBgn0024963:3;Name=GluClalpha-in;Parent=FBtr0100127,FBtr0083788,FBtr0083787,FBtr0100128,FBtr0301378,FBtr0301379,FBtr0301380;parent_type=mRNA" - - - -	14676	15,579,088 – 15,579,179	+	12	103	73.59	-2.57	0.27	0.853800
10677	dm3.chr3R	15,579,088 – 15,579,179		14677	15,579,088 – 15,579,179	-	12	103	73.59	-2.81	0.43	0.997137
10678	dm3.chr3R	15,612,726 – 15,612,842	- - - - - - - -	14678	15,612,726 – 15,612,833	+	5	107	88.22	-2.62	0.70	0.929053
				14679	15,612,726 – 15,612,833	-	5	107	88.22	-2.58	0.69	0.909653
				14680	15,612,736 – 15,612,842	+	6	106	82.89	-2.37	0.59	0.899027
				14681	15,612,736 – 15,612,842	-	6	106	82.89	-1.91	0.56	0.500000
10679	dm3.chr3R	15,615,838 – 15,615,981	FBnoncoding="tRNA;ID=FBtr0083792;Name=tRNA:V3b:92Bb-RA;Parent=FBgn0012004;Dbxref=FlyBase_Annotation_IDs:CR31430-RA;score_text=Weakly" tRNAscann="Val_chr3R_trna26" - - "Rfam_10.0=RF00005;tRNA;AC009461.5/117254-117326\|3.9e-26" - - -	14682	15,615,838 – 15,615,981	+	13	171	68.87	-0.24	0.78	0.853071
10679	dm3.chr3R	15,615,838 – 15,615,981		14683	15,615,838 – 15,615,981	-	13	171	68.87	-0.39	0.76	0.898348
10680	dm3.chr3R	15,628,403 – 15,628,502	FBnoncoding="tRNA;ID=FBtr0083794;Name=tRNA:CR31471-RA;Parent=FBgn0051471;Alias=CR31471-RA;Dbxref=FlyBase_Annotation_IDs:CR31471-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna28" - intron="intron;ID=intron_FBgn0014135:5_FBgn0014135:4;Name=bnl-in;Parent=FBtr0083795,FBtr0300123;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAJJ01000411.1/14125-14198\|1.0e-25" - - "mirBase_v16=hsa-mir-3676\|4.2e-16"	14684	15,628,403 – 15,628,502	+	13	109	79.65	-0.65	0.76	0.581862
10680	dm3.chr3R	15,628,403 – 15,628,502		14685	15,628,403 – 15,628,502	-	13	109	79.65	-2.05	0.85	0.993972
10681	dm3.chr3R	15,631,768 – 15,631,829	- - - intron="intron;ID=intron_FBgn0014135:5_FBgn0014135:4;Name=bnl-in;Parent=FBtr0083795,FBtr0300123;parent_type=mRNA" - - - -	14686	15,631,768 – 15,631,829	+	8	62	85.27	-1.65	0.71	0.684657
10681	dm3.chr3R	15,631,768 – 15,631,829		14687	15,631,768 – 15,631,829	-	8	62	85.27	-2.21	0.66	0.896517
10682	dm3.chr3R	15,652,957 – 15,653,052	- - - intron="intron;ID=intron_FBgn0014135:5_FBgn0014135:4;Name=bnl-in;Parent=FBtr0083795,FBtr0300123;parent_type=mRNA" - - - -	14688	15,652,957 – 15,653,052	+	4	95	82.86	-1.35	0.80	0.592115
10683	dm3.chr3R	15,654,134 – 15,654,195	- - CDS="CDS;ID=CDS_FBgn0014135:5_15;Name=bnl-cds;Parent=FBtr0083795;parent_type=mRNA" - - - - -	14689	15,654,134 – 15,654,195	-	4	61	83.88	-1.33	0.91	0.870902
10684	dm3.chr3R	15,660,998 – 15,661,089	- - - intron="intron;ID=intron_FBgn0014135:6_FBgn0014135:5;Name=bnl-in;Parent=FBtr0083795,FBtr0300123;parent_type=mRNA" - - - -	14690	15,660,998 – 15,661,089	-	9	99	72.06	-1.13	0.62	0.939720
10685	dm3.chr3R	15,673,207 – 15,673,313	- - CDS="CDS;ID=CDS_FBgn0038735:1_74;Name=CG4662-cds;Parent=FBtr0083814;parent_type=mRNA" - - - - -	14691	15,673,207 – 15,673,313	+	12	115	58.27	-0.64	0.39	0.665443
10686	dm3.chr3R	15,674,035 – 15,674,135	- - - intron="intron;ID=intron_FBgn0038735:1_FBgn0038735:2;Name=CG4662-in;Parent=FBtr0083814,FBtr0083813,FBtr0301116;parent_type=mRNA" - - - -	14692	15,674,035 – 15,674,135	-	3	102	56.52	-1.21	0.45	0.639005
10687	dm3.chr3R	15,678,472 – 15,678,574	- - - intron="intron;ID=intron_FBgn0038735:10_FBgn0038735:13;Name=CG4662-in;Parent=FBtr0083814;parent_type=mRNA" - - - -	14693	15,678,472 – 15,678,574	-	6	109	77.23	-1.39	0.70	0.847063
10688	dm3.chr3R	15,684,269 – 15,684,362	- - - intron="intron;ID=intron_FBgn0038736:6_FBgn0038736:5;Name=Ire1-in;Parent=FBtr0113249;parent_type=mRNA" - - - -	14694	15,684,269 – 15,684,362	-	5	93	93.38	-1.23	0.93	0.633568
10689	dm3.chr3R	15,696,667 – 15,696,746	- - CDS="CDS;ID=CDS_FBgn0038740:5_69;Name=CG4562-cds;Parent=FBtr0083859;parent_type=mRNA" - - - - -	14695	15,696,667 – 15,696,746	-	9	79	72.30	-1.24	0.55	0.923286
10690	dm3.chr3R	15,698,941 – 15,699,034	- - - intron="intron;ID=intron_FBgn0038740:9_FBgn0038740:8;Name=CG4562-in;Parent=FBtr0083859,FBtr0113250;parent_type=mRNA" - - - -	14696	15,698,941 – 15,699,034	+	7	102	70.85	-2.55	0.39	0.981779
10690	dm3.chr3R	15,698,941 – 15,699,034		14697	15,698,941 – 15,699,034	-	7	102	70.85	-2.88	0.48	0.998497
10691	dm3.chr3R	15,712,317 – 15,712,413	- - CDS="CDS;ID=CDS_CG4550:5_17;Name=ninaE-cds;Parent=FBtr0083857;parent_type=mRNA" - - - - -	14698	15,712,317 – 15,712,413	-	13	102	73.14	-0.78	0.51	0.538514
10692	dm3.chr3R	15,747,208 – 15,747,304	- - - - - - - -	14699	15,747,208 – 15,747,304	+	3	117	68.01	-1.44	0.67	0.880338
10693	dm3.chr3R	15,762,493 – 15,762,591	- - - - - - - -	14700	15,762,493 – 15,762,591	+	10	113	64.06	-1.22	0.37	0.749457
10694	dm3.chr3R	15,762,759 – 15,762,822	- - - - - - - -	14701	15,762,759 – 15,762,822	+	8	63	64.60	-1.83	0.27	0.694657
10695	dm3.chr3R	15,778,240 – 15,778,335	- - - - - - - -	14702	15,778,240 – 15,778,335	-	5	105	88.65	-1.56	0.80	0.509135
10696	dm3.chr3R	15,778,727 – 15,778,820	- - - - - - - -	14703	15,778,727 – 15,778,820	-	6	97	81.84	-1.63	0.73	0.813963
10697	dm3.chr3R	15,797,880 – 15,797,974	- - - - - - - -	14704	15,797,880 – 15,797,974	+	12	108	73.03	-2.70	0.31	0.928463
10698	dm3.chr3R	15,806,917 – 15,807,053	- - - - - - - -	14705	15,806,917 – 15,807,016	+	4	102	85.39	-1.73	0.82	0.828927
				14706	15,806,917 – 15,807,016	-	4	102	85.39	-1.95	0.81	0.897377
				14707	15,806,954 – 15,807,053	+	5	102	77.86	-1.23	0.76	0.735039
10699	dm3.chr3R	15,828,264 – 15,828,361	- - - - - - - -	14708	15,828,264 – 15,828,361	+	3	97	96.55	-2.29	0.97	0.979244
10699	dm3.chr3R	15,828,264 – 15,828,361	- - - - - - - -	14709	15,828,264 – 15,828,361	-	3	97	96.55	-1.40	0.96	0.768407
10700	dm3.chr3R	15,866,885 – 15,866,944	- - - intron="intron;ID=intron_FBgn0040571:3_FBgn0040571:1;Name=CG17193-in;Parent=FBtr0083838;parent_type=mRNA" - - - -	14710	15,866,885 – 15,866,944	-	5	66	79.13	-2.42	0.51	0.852795
10701	dm3.chr3R	15,884,481 – 15,884,590	- - - intron="intron;ID=intron_FBgn0038772:2_FBgn0038772:3;Name=CG4973-in;Parent=FBtr0083835;parent_type=mRNA" - - - -	14711	15,884,481 – 15,884,590	+	14	113	62.19	-0.78	0.35	0.552965
10702	dm3.chr3R	15,884,837 – 15,884,929	- - - - - - - -	14712	15,884,837 – 15,884,929	+	5	103	75.74	-2.22	0.48	0.837579
10703	dm3.chr3R	15,886,455 – 15,886,547	- - - - - - - -	14713	15,886,455 – 15,886,547	-	11	113	66.31	-1.45	0.32	0.500000
10704	dm3.chr3R	15,889,927 – 15,890,028	- - - - - - - -	14714	15,889,927 – 15,890,028	+	12	116	91.69	-2.09	0.92	0.971814
10705	dm3.chr3R	15,891,382 – 15,891,473	- - - - - - - -	14715	15,891,382 – 15,891,473	+	6	102	73.65	-1.80	0.42	0.523198
10706	dm3.chr3R	15,900,569 – 15,900,660	- - - - - - - -	14716	15,900,569 – 15,900,660	+	6	98	75.79	-1.96	0.52	0.909637
10706	dm3.chr3R	15,900,569 – 15,900,660	- - - - - - - -	14717	15,900,569 – 15,900,660	-	6	98	75.79	-2.14	0.50	0.934738
10707	dm3.chr3R	15,909,204 – 15,909,303	- - - - - - - -	14718	15,909,204 – 15,909,303	+	7	105	71.27	-2.61	0.62	0.999090
10707	dm3.chr3R	15,909,204 – 15,909,303	- - - - - - - -	14719	15,909,204 – 15,909,303	-	7	105	71.27	-1.94	0.44	0.934233
10708	dm3.chr3R	15,918,254 – 15,918,349	- - - - - - - -	14720	15,918,254 – 15,918,349	+	5	95	96.21	-1.16	0.94	0.527927
10709	dm3.chr3R	15,924,562 – 15,924,636	- - - - - - - -	14721	15,924,562 – 15,924,636	-	4	85	62.00	-2.47	0.37	0.974335
10710	dm3.chr3R	15,930,765 – 15,930,857	- - - - - - - -	14722	15,930,765 – 15,930,857	+	3	110	71.75	-2.18	0.52	0.812852
10711	dm3.chr3R	15,933,511 – 15,933,612	- - CDS="CDS;ID=CDS_FBgn0051206:4_213;Name=CG31206-cds;Parent=FBtr0083875;parent_type=mRNA" intron="intron;ID=intron_FBgn0051206:4_FBgn0051206:3;Name=CG31206-in;Parent=FBtr0083875;parent_type=mRNA" - - - -	14723	15,933,511 – 15,933,612	+	6	106	77.86	-1.75	0.59	0.831266
10712	dm3.chr3R	15,952,007 – 15,952,123	- - - - - - - -	14724	15,952,007 – 15,952,123	-	5	117	86.17	-2.38	0.80	0.968524
10713	dm3.chr3R	15,957,955 – 15,958,024	- - - - - - - -	14725	15,957,955 – 15,958,024	-	6	69	88.31	-1.56	0.79	0.595926
10714	dm3.chr3R	15,959,519 – 15,959,610	- - - - - - - -	14726	15,959,519 – 15,959,610	+	7	104	76.11	-2.04	0.39	0.500000
10715	dm3.chr3R	15,970,431 – 15,970,618	- - - - - - - -	14727	15,970,431 – 15,970,521	+	6	91	76.36	-1.48	0.53	0.646711
10715	dm3.chr3R	15,970,431 – 15,970,618	- - - - - - - -	14728	15,970,521 – 15,970,618	+	6	97	74.48	-0.78	0.62	0.520535
10716	dm3.chr3R	15,973,125 – 15,973,216	- - - - - - - -	14729	15,973,125 – 15,973,216	-	11	120	87.75	-2.81	0.77	0.984734
10717	dm3.chr3R	15,997,251 – 15,997,344	- - - intron="intron;ID=intron_CG5023:1_CG5023:2;Name=CG5023-in;Parent=FBtr0083866;parent_type=mRNA" - - - -	14730	15,997,251 – 15,997,344	+	10	111	65.48	-1.76	0.29	0.710629
10718	dm3.chr3R	16,008,325 – 16,008,428	- - - - - - - -	14731	16,008,325 – 16,008,428	-	6	112	64.20	-0.45	0.61	0.857566
10719	dm3.chr3R	16,008,507 – 16,008,620	- - - - - - - -	14732	16,008,507 – 16,008,620	+	3	116	75.65	-1.73	0.64	0.650933
10720	dm3.chr3R	16,010,331 – 16,010,436	- - - - - - - -	14733	16,010,331 – 16,010,436	+	8	112	80.54	-1.53	0.59	0.599902
10721	dm3.chr3R	16,016,802 – 16,016,946	- - - - - - - -	14734	16,016,802 – 16,016,946	+	5	162	76.59	-1.52	0.59	0.649194
10722	dm3.chr3R	16,021,518 – 16,021,609	- - - - - - - -	14735	16,021,518 – 16,021,609	+	7	117	60.14	-0.43	0.51	0.669637
10723	dm3.chr3R	16,026,877 – 16,026,976	- - - - - - - -	14736	16,026,877 – 16,026,972	+	11	111	80.38	-1.86	0.53	0.768510
				14737	16,026,877 – 16,026,972	-	11	111	80.38	-1.20	0.76	0.834424
				14738	16,026,877 – 16,026,976	-	11	113	81.30	-1.06	0.77	0.746702
10724	dm3.chr3R	16,029,849 – 16,029,954	- - - - - - - -	14739	16,029,849 – 16,029,954	-	3	105	77.56	-2.64	0.43	0.620943
10725	dm3.chr3R	16,035,733 – 16,035,837	- - - intron="intron;ID=intron_FBgn0083975:3_FBgn0083975:4;Name=CG34139-in;Parent=FBtr0301074,FBtr0301680;parent_type=mRNA" - - - -	14740	16,035,733 – 16,035,837	-	7	119	69.12	-1.55	0.46	0.858091
10726	dm3.chr3R	16,041,491 – 16,041,591	- - - intron="intron;ID=intron_FBgn0083975:8_FBgn0083975:9;Name=CG34139-in;Parent=FBtr0301074,FBtr0301075,FBtr0301680;parent_type=mRNA" - - - -	14741	16,041,491 – 16,041,591	+	10	111	76.95	-2.50	0.34	0.753280
10727	dm3.chr3R	16,047,022 – 16,047,112	- - - intron="intron;ID=intron_FBgn0083975:11_FBgn0083975:12;Name=CG34139-in;Parent=FBtr0301074,FBtr0301075,FBtr0301680;parent_type=mRNA" - - - -	14742	16,047,022 – 16,047,112	-	10	109	85.77	-2.34	0.81	0.975931
10728	dm3.chr3R	16,053,513 – 16,053,603	- - CDS="CDS;ID=CDS_FBgn0083975:13_94;Name=CG34139-cds;Parent=FBtr0301074;parent_type=mRNA" - - - - -	14743	16,053,513 – 16,053,603	-	12	90	81.72	-1.46	0.62	0.607157
10729	dm3.chr3R	16,069,908 – 16,070,009	- - - - - - - -	14744	16,069,908 – 16,070,009	+	12	117	80.51	-1.51	0.63	0.646831
10730	dm3.chr3R	16,078,431 – 16,078,531	- - - - - - - -	14745	16,078,431 – 16,078,531	+	6	117	72.81	-1.77	0.48	0.768026
10731	dm3.chr3R	16,080,424 – 16,080,527	- - - intron="intron;ID=intron_FBgn0262582:2_FBgn0262582:3;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14746	16,080,424 – 16,080,527	-	6	104	85.55	-2.48	0.68	0.946734
10732	dm3.chr3R	16,084,449 – 16,084,576	- - - intron="intron;ID=intron_FBgn0262582:2_FBgn0262582:3;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14747	16,084,449 – 16,084,552	+	5	111	82.65	-2.24	0.84	0.984366
				14748	16,084,449 – 16,084,552	-	5	111	82.65	-1.36	0.76	0.612190
				14749	16,084,469 – 16,084,576	+	6	112	77.68	-1.74	0.77	0.969237
10733	dm3.chr3R	16,087,049 – 16,087,100	- - - intron="intron;ID=intron_FBgn0262582:2_FBgn0262582:3;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14750	16,087,049 – 16,087,100	-	3	52	97.44	-0.92	0.98	0.510836
10734	dm3.chr3R	16,091,961 – 16,092,056	- - - intron="intron;ID=intron_FBgn0262582:2_FBgn0262582:3;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14751	16,091,961 – 16,092,056	+	4	95	84.71	-1.61	0.98	0.966973
10735	dm3.chr3R	16,105,447 – 16,105,504	- - - intron="intron;ID=intron_FBgn0262582:2_FBgn0262582:3;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14752	16,105,447 – 16,105,504	-	7	65	58.81	-1.97	0.50	0.998954
10736	dm3.chr3R	16,108,540 – 16,108,630	- - - intron="intron;ID=intron_FBgn0262582:2_FBgn0262582:3;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14753	16,108,540 – 16,108,630	-	6	91	74.63	-1.82	0.52	0.911937
10737	dm3.chr3R	16,109,899 – 16,110,000	- - - intron="intron;ID=intron_FBgn0262582:2_FBgn0262582:3;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14754	16,109,899 – 16,110,000	+	8	114	63.48	-0.63	0.49	0.776411
10738	dm3.chr3R	16,112,465 – 16,112,560	- - - intron="intron;ID=intron_FBgn0262582:2_FBgn0262582:3;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14755	16,112,465 – 16,112,560	-	5	104	92.42	-0.89	0.97	0.593650
10739	dm3.chr3R	16,117,122 – 16,117,218	- - - intron="intron;ID=intron_FBgn0262582:7_FBgn0262582:9;Name=cic-in;Parent=FBtr0305029;parent_type=mRNA" - - - -	14756	16,117,122 – 16,117,218	+	6	98	75.93	-1.00	0.77	0.849897
10740	dm3.chr3R	16,134,526 – 16,134,601	- - - - - - - -	14757	16,134,526 – 16,134,601	-	4	75	69.96	-1.92	0.62	0.977293
10741	dm3.chr3R	16,146,187 – 16,146,295	- - - intron="intron;ID=intron_FBgn0261550:12_FBgn0261550:15;Name=CG42668-in;Parent=FBtr0302671,FBtr0302672,FBtr0302673,FBtr0302667,FBtr0302669,FBtr0303586;parent_type=mRNA" - - - -	14758	16,146,187 – 16,146,295	-	12	115	68.19	-1.62	0.30	0.626381
10742	dm3.chr3R	16,152,120 – 16,152,170	- - CDS="CDS;ID=CDS_FBgn0038787:3_221;Name=CG4360-cds;Parent=FBtr0113252;parent_type=mRNA" - - - - -	14759	16,152,120 – 16,152,170	-	12	50	75.09	-1.33	0.57	0.954381
10743	dm3.chr3R	16,160,637 – 16,160,735	- - - - - - - -	14760	16,160,637 – 16,160,735	+	4	116	75.98	-1.54	0.64	0.612685
10744	dm3.chr3R	16,163,942 – 16,164,038	- - - - - - - -	14761	16,163,942 – 16,164,038	+	6	96	86.90	-2.17	0.66	0.739759
10744	dm3.chr3R	16,163,942 – 16,164,038	- - - - - - - -	14762	16,163,942 – 16,164,038	-	6	96	86.90	-2.20	0.70	0.846857
10745	dm3.chr3R	16,177,183 – 16,177,337	- - - - - - - -	14763	16,177,183 – 16,177,337	+	9	155	83.08	-1.86	0.64	0.809079
10745	dm3.chr3R	16,177,183 – 16,177,337	- - - - - - - -	14764	16,177,183 – 16,177,337	-	9	155	83.08	-1.76	0.66	0.791418
10746	dm3.chr3R	16,186,900 – 16,186,998	- - - - - - - -	14765	16,186,900 – 16,186,998	+	10	116	74.71	-1.14	0.52	0.525748
10747	dm3.chr3R	16,191,500 – 16,191,604	- - - - - - - -	14766	16,191,500 – 16,191,604	+	7	120	77.71	-1.66	0.54	0.500000
10748	dm3.chr3R	16,192,989 – 16,193,085	- - - - - - - -	14767	16,192,989 – 16,193,085	+	11	109	75.66	-1.01	0.62	0.752553
10749	dm3.chr3R	16,193,192 – 16,193,296	- - - - - - - -	14768	16,193,192 – 16,193,296	+	11	112	85.37	-1.18	0.78	0.520323
10750	dm3.chr3R	16,208,634 – 16,208,715	- - - intron="intron;ID=intron_FBgn0262869:4_FBgn0262869:3;Name=mun-in;Parent=FBtr0306199,FBtr0306200,FBtr0306201,FBtr0306202,FBtr0306203,FBtr0306204;parent_type=mRNA" - - - -	14769	16,208,634 – 16,208,715	-	10	86	79.27	-1.66	0.51	0.617973
10751	dm3.chr3R	16,234,753 – 16,234,870	- - CDS="CDS;ID=CDS_FBgn0038796:1_197;Name=CG10881-cds;Parent=FBtr0083885;parent_type=mRNA" - - - - -	14770	16,234,753 – 16,234,870	+	15	120	75.74	-1.39	0.52	0.842464
10752	dm3.chr3R	16,239,473 – 16,239,572	- - - intron="intron;ID=intron_FBgn0262869:20_FBgn0262869:19;Name=mun-in;Parent=FBtr0306199,FBtr0306203;parent_type=mRNA" - - - -	14771	16,239,473 – 16,239,572	+	4	100	93.97	-2.23	0.84	0.869080
10753	dm3.chr3R	16,246,427 – 16,246,517	- - - intron="intron;ID=intron_FBgn0262869:20_FBgn0262869:19;Name=mun-in;Parent=FBtr0306199,FBtr0306203;parent_type=mRNA" - - - -	14772	16,246,427 – 16,246,517	-	7	97	69.02	-0.99	0.58	0.893710
10754	dm3.chr3R	16,249,028 – 16,249,119	- - - intron="intron;ID=intron_FBgn0262869:20_FBgn0262869:19;Name=mun-in;Parent=FBtr0306199,FBtr0306203;parent_type=mRNA" - - - -	14773	16,249,028 – 16,249,119	-	6	91	93.99	-1.34	0.93	0.719892
10755	dm3.chr3R	16,249,171 – 16,249,264	- - - intron="intron;ID=intron_FBgn0262869:20_FBgn0262869:19;Name=mun-in;Parent=FBtr0306199,FBtr0306203;parent_type=mRNA" - - - -	14774	16,249,171 – 16,249,264	-	12	120	69.12	-1.73	0.41	0.903599
10756	dm3.chr3R	16,264,183 – 16,264,275	- - - intron="intron;ID=intron_FBgn0262869:21_FBgn0262869:20;Name=mun-in;Parent=FBtr0306203;parent_type=mRNA" - - - -	14775	16,264,183 – 16,264,275	-	11	111	74.71	-1.78	0.41	0.724482
10757	dm3.chr3R	16,268,843 – 16,268,971	- - - intron="intron;ID=intron_FBgn0262869:21_FBgn0262869:20;Name=mun-in;Parent=FBtr0306203;parent_type=mRNA" - - - -	14776	16,268,843 – 16,268,937	+	9	116	80.74	-1.19	0.67	0.500000
10757	dm3.chr3R	16,268,843 – 16,268,971		14777	16,268,868 – 16,268,971	-	8	117	74.68	-1.52	0.51	0.677188
10758	dm3.chr3R	16,279,575 – 16,279,740	- - - - - - - -	14778	16,279,575 – 16,279,671	+	5	100	67.57	-1.49	0.49	0.859879
10758	dm3.chr3R	16,279,575 – 16,279,740	- - - - - - - -	14779	16,279,636 – 16,279,740	+	3	113	80.54	-1.76	0.76	0.788873
10759	dm3.chr3R	16,281,526 – 16,281,581	- - - - - - - -	14780	16,281,526 – 16,281,581	+	4	55	93.64	-1.50	0.88	0.575693
10759	dm3.chr3R	16,281,526 – 16,281,581	- - - - - - - -	14781	16,281,526 – 16,281,581	-	4	55	93.64	-1.97	0.86	0.815671
10760	dm3.chr3R	16,281,770 – 16,281,915	- - - - - - - -	14782	16,281,770 – 16,281,887	+	12	120	94.03	-2.26	0.93	0.976011
				14783	16,281,770 – 16,281,887	-	12	120	94.03	-2.72	0.79	0.948629
				14784	16,281,807 – 16,281,915	-	10	118	86.59	-1.79	0.71	0.700822
10761	dm3.chr3R	16,285,355 – 16,285,456	- - - - - - - -	14785	16,285,355 – 16,285,456	+	8	102	85.09	-2.20	0.72	0.919759
10762	dm3.chr3R	16,301,023 – 16,301,116	- - - intron="intron;ID=intron_FBgn0262869:24_FBgn0262869:23;Name=mun-in;Parent=FBtr0306200,FBtr0306201,FBtr0306202,FBtr0306205;parent_type=mRNA" - - - -	14786	16,301,023 – 16,301,116	-	3	102	89.22	-1.56	0.87	0.697257
10763	dm3.chr3R	16,307,812 – 16,307,923	- - - intron="intron;ID=intron_FBgn0262869:25_FBgn0262869:24;Name=mun-in;Parent=FBtr0306200,FBtr0306201,FBtr0306202,FBtr0306205;parent_type=mRNA" - - - -	14787	16,307,812 – 16,307,923	+	12	120	86.42	-2.04	0.60	0.618822
10764	dm3.chr3R	16,311,188 – 16,311,285	- - - - - - - -	14788	16,311,188 – 16,311,285	+	5	97	80.84	-2.18	0.57	0.798170
10764	dm3.chr3R	16,311,188 – 16,311,285	- - - - - - - -	14789	16,311,188 – 16,311,285	-	5	97	80.84	-2.53	0.61	0.958057
10765	dm3.chr3R	16,314,099 – 16,314,150	- - - - - - - -	14790	16,314,099 – 16,314,150	-	7	56	73.31	-2.04	0.47	0.878082
10766	dm3.chr3R	16,320,662 – 16,320,757	- - - - - - - -	14791	16,320,662 – 16,320,757	-	12	118	73.50	-1.49	0.58	0.895603
10767	dm3.chr3R	16,324,912 – 16,325,010	- - - - - - - -	14792	16,324,912 – 16,325,010	+	8	119	60.16	-0.93	0.39	0.523888
10768	dm3.chr3R	16,328,956 – 16,329,059	- - - - - - - -	14793	16,328,956 – 16,329,059	-	5	103	93.59	-2.39	0.79	0.850394
10769	dm3.chr3R	16,329,331 – 16,329,421	- - - - - - - -	14794	16,329,331 – 16,329,421	+	12	102	53.69	-1.43	0.22	0.720100
10770	dm3.chr3R	16,333,659 – 16,333,769	- - - - - - - -	14795	16,333,659 – 16,333,769	-	12	111	71.26	-0.79	0.55	0.807804
10771	dm3.chr3R	16,341,331 – 16,341,409	- - - - - - - -	14796	16,341,331 – 16,341,409	+	4	82	55.74	-1.28	0.43	0.958272
10771	dm3.chr3R	16,341,331 – 16,341,409	- - - - - - - -	14797	16,341,331 – 16,341,409	-	4	82	55.74	-1.51	0.43	0.982402
10772	dm3.chr3R	16,347,323 – 16,347,439	- - - - - - - -	14798	16,347,323 – 16,347,385	+	4	62	98.39	-1.04	0.98	0.589397
10772	dm3.chr3R	16,347,323 – 16,347,439	- - - - - - - -	14799	16,347,385 – 16,347,439	-	4	58	88.99	-1.61	0.83	0.644703
10773	dm3.chr3R	16,348,445 – 16,348,548	- - - - - - - -	14800	16,348,445 – 16,348,548	+	6	103	83.62	-1.57	0.73	0.727092
10773	dm3.chr3R	16,348,445 – 16,348,548	- - - - - - - -	14801	16,348,445 – 16,348,548	-	6	103	83.62	-1.32	0.75	0.579379
10774	dm3.chr3R	16,349,106 – 16,349,201	- - - - - - - -	14802	16,349,106 – 16,349,201	+	6	109	74.78	-1.82	0.59	0.918229
10774	dm3.chr3R	16,349,106 – 16,349,201	- - - - - - - -	14803	16,349,106 – 16,349,201	-	6	109	74.78	-1.73	0.53	0.771740
10775	dm3.chr3R	16,350,236 – 16,350,355	- - - - - - - -	14804	16,350,236 – 16,350,355	+	12	139	74.38	-2.84	0.28	0.870208
10776	dm3.chr3R	16,369,346 – 16,369,440	- - - intron="intron;ID=intron_CG4257:19_CG4257:2;Name=Stat92E-in;Parent=FBtr0089485;parent_type=mRNA" - - - -	14805	16,369,346 – 16,369,440	-	4	106	88.78	-1.20	0.90	0.595713
10777	dm3.chr3R	16,379,976 – 16,380,126	- - CDS="CDS;ID=CDS_FBgn0067782:5_78;Name=att-ORFB-cds;Parent=FBtr0090034;parent_type=mRNA" - - - - -	14806	16,379,976 – 16,380,071	+	3	95	95.09	-2.63	0.97	0.991504
10777	dm3.chr3R	16,379,976 – 16,380,126		14807	16,380,071 – 16,380,126	-	3	55	97.58	-1.26	1.00	0.832471
10778	dm3.chr3R	16,383,431 – 16,383,544	- - - - - - - -	14808	16,383,431 – 16,383,544	-	6	136	56.15	-1.63	0.31	0.885768
10779	dm3.chr3R	16,389,784 – 16,389,859	- - - intron="intron;ID=intron_CG5191:6_CG5191:5;Name=CG5191-in;Parent=FBtr0083907;parent_type=mRNA" - - - -	14809	16,389,784 – 16,389,859	+	7	83	73.40	-2.30	0.37	0.864572
10780	dm3.chr3R	16,397,672 – 16,397,774	- - CDS="CDS;ID=CDS_CG5191:4_28;Name=CG5191-cds;Parent=FBtr0083906;parent_type=mRNA" - - - - -	14810	16,397,672 – 16,397,774	+	14	110	78.98	-2.43	0.32	0.631069
10781	dm3.chr3R	16,398,838 – 16,398,918	- - - - - - - -	14811	16,398,838 – 16,398,918	+	5	84	89.26	-2.14	0.84	0.932246
10781	dm3.chr3R	16,398,838 – 16,398,918	- - - - - - - -	14812	16,398,838 – 16,398,918	-	5	84	89.26	-3.13	0.93	0.997266
10782	dm3.chr3R	16,400,694 – 16,400,828	- - - - - - - -	14813	16,400,694 – 16,400,828	+	11	137	74.01	-2.92	0.43	0.996815
10783	dm3.chr3R	16,405,565 – 16,405,701	- - - - - - - -	14814	16,405,565 – 16,405,701	+	5	136	85.29	-2.39	0.75	0.959363
10783	dm3.chr3R	16,405,565 – 16,405,701	- - - - - - - -	14815	16,405,565 – 16,405,701	-	5	136	85.29	-2.45	0.74	0.962285
10784	dm3.chr3R	16,414,529 – 16,414,637	- - CDS="CDS;ID=CDS_FBgn0038810:1_96;Name=Srp72-cds;Parent=FBtr0083911;parent_type=mRNA" - - - - -	14816	16,414,529 – 16,414,637	+	14	113	66.51	-1.09	0.38	0.783307
10785	dm3.chr3R	16,420,546 – 16,420,666	- - - intron="intron;ID=intron_FBgn0023097:1_FBgn0023097:3;Name=bon-in;Parent=FBtr0083912;parent_type=mRNA" - - - -	14817	16,420,546 – 16,420,638	-	7	120	62.22	-1.89	0.36	0.913362
10785	dm3.chr3R	16,420,546 – 16,420,666		14818	16,420,569 – 16,420,666	-	7	119	57.94	-1.25	0.34	0.730058
10786	dm3.chr3R	16,422,239 – 16,422,315	- - - intron="intron;ID=intron_FBgn0023097:1_FBgn0023097:3;Name=bon-in;Parent=FBtr0083912;parent_type=mRNA" - - - -	14819	16,422,239 – 16,422,315	-	5	76	59.38	-2.20	0.40	0.993058
10787	dm3.chr3R	16,430,882 – 16,430,972	- - - intron="intron;ID=intron_FBgn0023097:1_FBgn0023097:3;Name=bon-in;Parent=FBtr0083912;parent_type=mRNA" - - - -	14820	16,430,882 – 16,430,972	+	6	91	76.78	-1.13	0.64	0.552809
10788	dm3.chr3R	16,451,926 – 16,452,061	- - CDS="CDS;ID=CDS_CG5460:5_66;Name=H-cds;Parent=FBtr0083916;parent_type=mRNA" - - - - -	14821	16,451,926 – 16,452,024	+	11	114	61.70	-2.87	0.20	0.979102
				14822	16,451,926 – 16,452,024	-	11	114	61.70	-2.97	0.22	0.990889
				14823	16,451,962 – 16,452,061	+	12	115	62.86	-1.72	0.31	0.895821
				14824	16,451,962 – 16,452,061	-	12	115	62.86	-1.31	0.30	0.558336
10789	dm3.chr3R	16,467,639 – 16,467,732	- - - - - - - -	14825	16,467,639 – 16,467,732	-	12	96	71.12	-0.60	0.56	0.702550
10790	dm3.chr3R	16,496,146 – 16,496,237	- - - intron="intron;ID=intron_CG5494:1_CG5494:2;Name=Cpr92F-in;Parent=FBtr0083919;parent_type=mRNA" - - - -	14826	16,496,146 – 16,496,237	+	12	114	58.64	-2.22	0.31	0.991297
10791	dm3.chr3R	16,496,311 – 16,496,410	- - - intron="intron;ID=intron_CG5494:1_CG5494:2;Name=Cpr92F-in;Parent=FBtr0083919;parent_type=mRNA" - - - -	14827	16,496,311 – 16,496,410	+	5	100	81.12	-1.71	0.68	0.689322
10791	dm3.chr3R	16,496,311 – 16,496,410		14828	16,496,311 – 16,496,410	-	5	100	81.12	-1.35	0.81	0.765213
10792	dm3.chr3R	16,501,654 – 16,501,752	- - - - - - - -	14829	16,501,654 – 16,501,752	+	7	116	75.39	-1.60	0.59	0.840795
10793	dm3.chr3R	16,524,937 – 16,525,036	- - - intron="intron;ID=intron_FBgn0024944:4_FBgn0024944:3;Name=Oamb-in;Parent=FBtr0083932,FBtr0083933,FBtr0083934;parent_type=mRNA" - - - -	14830	16,524,937 – 16,525,036	+	7	105	75.18	-1.29	0.52	0.584154
10793	dm3.chr3R	16,524,937 – 16,525,036		14831	16,524,937 – 16,525,036	-	7	105	75.18	-1.30	0.69	0.929565
10794	dm3.chr3R	16,541,563 – 16,541,659	- - - - - - - -	14832	16,541,563 – 16,541,659	+	6	119	78.97	-1.61	0.61	0.555489
10795	dm3.chr3R	16,547,555 – 16,547,606	- - - - - - - -	14833	16,547,555 – 16,547,606	+	4	51	93.14	-2.23	0.83	0.868355
10795	dm3.chr3R	16,547,555 – 16,547,606	- - - - - - - -	14834	16,547,555 – 16,547,606	-	4	51	93.14	-1.60	0.95	0.892982
10796	dm3.chr3R	16,547,939 – 16,548,056	- - - - - - - -	14835	16,547,939 – 16,548,056	+	7	121	73.65	-1.45	0.45	0.518209
10797	dm3.chr3R	16,550,922 – 16,551,017	- - - - - - - -	14836	16,550,922 – 16,551,017	+	9	112	75.81	-2.32	0.53	0.983169
10798	dm3.chr3R	16,553,303 – 16,553,461	- - - - - - - -	14837	16,553,303 – 16,553,461	-	7	173	72.99	-1.50	0.49	0.500000
10799	dm3.chr3R	16,554,888 – 16,554,985	- - - - - - - -	14838	16,554,888 – 16,554,985	-	8	105	71.85	-1.56	0.44	0.551823
10800	dm3.chr3R	16,564,639 – 16,564,744	- - - - - - - -	14839	16,564,639 – 16,564,744	-	6	109	83.32	-1.59	0.70	0.654773
10801	dm3.chr3R	16,573,079 – 16,573,162	- - CDS="CDS;ID=CDS_FBgn0259222:7_158;Name=CG42322-cds;Parent=FBtr0299766,FBtr0299767,FBtr0299768,FBtr0299769;parent_type=mRNA" - - - - -	14840	16,573,079 – 16,573,162	-	15	84	81.69	-1.30	0.57	0.523532
10802	dm3.chr3R	16,578,772 – 16,578,894	- - - intron="intron;ID=intron_FBgn0259222:15_FBgn0259222:17;Name=CG42322-in;Parent=FBtr0305057,FBtr0305058;parent_type=mRNA" - - - -	14841	16,578,772 – 16,578,889	+	5	120	91.29	-2.37	0.80	0.912923
				14842	16,578,772 – 16,578,889	-	5	120	91.29	-3.17	0.89	0.995665
				14843	16,578,777 – 16,578,894	+	5	120	91.03	-2.08	0.80	0.813158
				14844	16,578,777 – 16,578,894	-	5	120	91.03	-3.00	0.89	0.994215
10803	dm3.chr3R	16,594,329 – 16,594,389	- - - - - - - -	14845	16,594,329 – 16,594,389	+	4	61	83.56	-1.51	0.81	0.751587
10804	dm3.chr3R	16,600,115 – 16,600,211	- - - intron="intron;ID=intron_FBgn0038826:2_FBgn0038826:6;Name=CG17838-in;Parent=FBtr0083958;parent_type=mRNA" - - - -	14846	16,600,115 – 16,600,211	+	8	96	73.12	-1.83	0.38	0.582914
10805	dm3.chr3R	16,601,670 – 16,601,765	- - - intron="intron;ID=intron_FBgn0038826:2_FBgn0038826:6;Name=CG17838-in;Parent=FBtr0083958;parent_type=mRNA" - - - -	14847	16,601,670 – 16,601,765	-	10	108	80.82	-1.66	0.56	0.665813
10806	dm3.chr3R	16,611,667 – 16,611,762	- - - intron="intron;ID=intron_FBgn0038826:4_FBgn0038826:6;Name=CG17838-in;Parent=FBtr0083961;parent_type=mRNA" - - - -	14848	16,611,667 – 16,611,762	+	7	105	59.59	-2.00	0.23	0.788381
10806	dm3.chr3R	16,611,667 – 16,611,762		14849	16,611,667 – 16,611,762	-	7	105	59.59	-1.69	0.33	0.933342
10807	dm3.chr3R	16,617,611 – 16,617,706	- - - - - - - -	14850	16,617,611 – 16,617,706	+	11	106	59.30	-0.74	0.48	0.949842
10808	dm3.chr3R	16,619,662 – 16,619,765	- - - intron="intron;ID=intron_FBgn0038826:9_FBgn0038826:11;Name=CG17838-in;Parent=FBtr0083958,FBtr0083959,FBtr0083961,FBtr0083962,FBtr0083963,FBtr0113256;parent_type=mRNA" - - - -	14851	16,619,662 – 16,619,765	+	9	109	67.59	-0.87	0.55	0.741993
10809	dm3.chr3R	16,624,153 – 16,624,233	- - - intron="intron;ID=intron_FBgn0038826:16_FBgn0038826:17;Name=CG17838-in;Parent=FBtr0083959,FBtr0083962;parent_type=mRNA" - - - -	14852	16,624,153 – 16,624,233	+	7	89	65.47	-1.40	0.50	0.965046
10809	dm3.chr3R	16,624,153 – 16,624,233		14853	16,624,153 – 16,624,233	-	7	89	65.47	-2.13	0.36	0.964365
10810	dm3.chr3R	16,629,288 – 16,629,398	- - - intron="intron;ID=intron_FBgn0038826:18_FBgn0038826:19;Name=CG17838-in;Parent=FBtr0083962;parent_type=mRNA" - - - -	14854	16,629,288 – 16,629,398	+	5	117	68.71	-1.60	0.44	0.787070
10811	dm3.chr3R	16,631,668 – 16,631,725	- - CDS="CDS;ID=CDS_FBgn0038826:20_132;Name=CG17838-cds;Parent=FBtr0083958;parent_type=mRNA" - - - - -	14855	16,631,668 – 16,631,725	-	14	57	91.79	-1.09	0.88	0.500000
10812	dm3.chr3R	16,646,677 – 16,646,818	- - - intron="intron;ID=intron_FBgn0038829:4_FBgn0038829:3;Name=CG17271-in;Parent=FBtr0083993,FBtr0110823;parent_type=mRNA" - - - -	14856	16,646,677 – 16,646,818	-	6	144	68.89	-1.42	0.39	0.602585
10813	dm3.chr3R	16,647,796 – 16,647,862	- - - - - - - -	14857	16,647,796 – 16,647,862	-	5	81	78.35	-1.81	0.72	0.909592
10814	dm3.chr3R	16,648,400 – 16,648,494	FBnoncoding="snoRNA;ID=FBtr0113584;Name=snoRNA:Psi18S-1295-RA;Parent=FBgn0083055;Dbxref=FlyBase_Annotation_IDs:CR34615-RA,REFSEQ:NR_003901;score_text=Weakly" - - intron="intron;ID=intron_CG15693:2_CG15693:3;Name=RpS20-in;Parent=FBtr0083964;parent_type=mRNA" - - - -	14858	16,648,400 – 16,648,494	+	12	114	56.25	-3.97	0.72	0.999973
10814	dm3.chr3R	16,648,400 – 16,648,494		14859	16,648,400 – 16,648,494	-	12	114	56.25	-2.15	0.35	0.996236
10815	dm3.chr3R	16,653,193 – 16,653,287	- - - intron="intron;ID=intron_CG17273:2_CG17273:3;Name=CG17273-in;Parent=FBtr0083991;parent_type=mRNA" - - - -	14860	16,653,193 – 16,653,287	-	4	99	72.87	-0.80	0.80	0.686632
10816	dm3.chr3R	16,694,140 – 16,694,240	- - - - - - - -	14861	16,694,140 – 16,694,240	-	7	105	77.72	-1.81	0.51	0.614492
10817	dm3.chr3R	16,699,792 – 16,699,844	- - CDS="CDS;ID=CDS_CG5609:2_91;Name=TotB-cds;Parent=FBtr0083973;parent_type=mRNA" - - - - -	14862	16,699,792 – 16,699,844	-	5	52	82.12	-2.75	0.78	0.993320
10818	dm3.chr3R	16,703,583 – 16,703,702	- - CDS="CDS;ID=CDS_CG31507:2_91;Name=TotZ-cds;Parent=FBtr0083974;parent_type=mRNA" - - - - -	14863	16,703,583 – 16,703,702	-	4	119	90.48	-1.46	0.85	0.534411
10819	dm3.chr3R	16,706,650 – 16,706,748	- - - - - - - -	14864	16,706,650 – 16,706,745	+	5	108	85.88	-1.60	0.86	0.829503
				14865	16,706,650 – 16,706,745	-	5	108	85.88	-2.40	0.83	0.973628
				14866	16,706,652 – 16,706,748	-	5	108	87.10	-2.08	0.80	0.887595
10820	dm3.chr3R	16,716,412 – 16,716,492	FBnoncoding="tRNA;ID=FBtr0083975;Name=tRNA:CR31480-RA;Parent=FBgn0051480;Alias=CR31480-RA;Dbxref=FlyBase_Annotation_IDs:CR31480-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna29" - - "Rfam_10.0=RF00005;tRNA;AAPT01018746.1/53261-53332\|1.2e-24" - - -	14867	16,716,412 – 16,716,492	+	12	82	90.31	-2.08	0.95	0.984252
10820	dm3.chr3R	16,716,412 – 16,716,492		14868	16,716,412 – 16,716,492	-	12	82	90.31	-2.46	0.96	0.993881
10821	dm3.chr3R	16,717,372 – 16,717,451	FBnoncoding="tRNA;ID=FBtr0083977;Name=tRNA:CR31333-RA;Parent=FBgn0051333;Alias=CR31333-RA;Dbxref=FlyBase_Annotation_IDs:CR31333-RA;score_text=Weakly" tRNAscann="Thr_chr3R_trna31" - - "Rfam_10.0=RF00005;tRNA;AAPT01018746.1/53261-53332\|1.2e-24" - - -	14869	16,717,372 – 16,717,451	+	13	83	89.04	-1.93	0.95	0.981844
10821	dm3.chr3R	16,717,372 – 16,717,451		14870	16,717,372 – 16,717,451	-	13	83	89.04	-2.55	0.96	0.995581
10822	dm3.chr3R	16,719,125 – 16,719,175	- - - - - - - -	14871	16,719,125 – 16,719,175	+	8	51	90.59	-2.27	0.89	0.974687
10823	dm3.chr3R	16,720,756 – 16,720,807	- - - - - - - -	14872	16,720,756 – 16,720,807	-	5	51	94.31	-1.49	0.90	0.661123
10824	dm3.chr3R	16,723,474 – 16,723,568	- - - - - - - -	14873	16,723,474 – 16,723,568	+	8	120	75.64	-1.48	0.60	0.715804
10825	dm3.chr3R	16,741,412 – 16,741,502	- - - intron="intron;ID=intron_FBgn0038842:1_FBgn0038842:2;Name=CG5630-in;Parent=FBtr0083979,FBtr0113257;parent_type=mRNA" - - - -	14874	16,741,412 – 16,741,502	-	5	90	80.81	-2.15	0.70	0.946351
10826	dm3.chr3R	16,745,929 – 16,745,996	- - - intron="intron;ID=intron_FBgn0038842:1_FBgn0038842:2;Name=CG5630-in;Parent=FBtr0083979,FBtr0113257;parent_type=mRNA" - - - -	14875	16,745,929 – 16,745,996	-	7	74	70.90	-1.75	0.37	0.661832
10827	dm3.chr3R	16,748,657 – 16,748,763	- - - intron="intron;ID=intron_FBgn0038842:1_FBgn0038842:2;Name=CG5630-in;Parent=FBtr0083979,FBtr0113257;parent_type=mRNA" - - - -	14876	16,748,657 – 16,748,763	+	5	115	79.33	-2.11	0.58	0.861928
10828	dm3.chr3R	16,756,580 – 16,756,694	- - - intron="intron;ID=intron_FBgn0051191:7_FBgn0051191:5;Name=CG31191-in;Parent=FBtr0302412;parent_type=mRNA" - - - -	14877	16,756,580 – 16,756,694	-	11	120	83.76	-1.64	0.83	0.917923
10829	dm3.chr3R	16,762,527 – 16,762,623	- - - intron="intron;ID=intron_FBgn0051191:8_FBgn0051191:6;Name=CG31191-in;Parent=FBtr0083984;parent_type=mRNA" - - - -	14878	16,762,527 – 16,762,623	+	7	111	65.08	-1.61	0.37	0.628418
10830	dm3.chr3R	16,781,929 – 16,782,055	- - - intron="intron;ID=intron_FBgn0002921:1_FBgn0002921:5;Name=Atpalpha-in;Parent=FBtr0089509,FBtr0089514,FBtr0089515,FBtr0300191;parent_type=mRNA" - - - -	14879	16,781,929 – 16,782,055	-	3	145	84.14	-1.66	0.76	0.551395
10831	dm3.chr3R	16,786,819 – 16,786,921	- - - intron="intron;ID=intron_FBgn0002921:5_FBgn0002921:7;Name=Atpalpha-in;Parent=FBtr0089509,FBtr0089514,FBtr0089515,FBtr0089512,FBtr0300191;parent_type=mRNA" - - - -	14880	16,786,819 – 16,786,921	+	7	114	79.18	-2.13	0.47	0.561442
10831	dm3.chr3R	16,786,819 – 16,786,921		14881	16,786,819 – 16,786,921	-	7	114	79.18	-2.96	0.34	0.752240
10832	dm3.chr3R	16,800,839 – 16,800,947	- - - - - - - -	14882	16,800,839 – 16,800,947	+	7	114	80.31	-1.44	0.65	0.586071
10832	dm3.chr3R	16,800,839 – 16,800,947	- - - - - - - -	14883	16,800,839 – 16,800,947	-	7	114	80.31	-2.43	0.57	0.948338
10833	dm3.chr3R	16,802,389 – 16,802,491	- - - - - - - -	14884	16,802,389 – 16,802,491	-	4	104	85.76	-2.38	0.77	0.954827
10834	dm3.chr3R	16,808,358 – 16,808,464	- - - intron="intron;ID=intron_FBgn0013995:1_FBgn0013995:5;Name=Calx-in;Parent=FBtr0083998;parent_type=mRNA" - - - -	14885	16,808,358 – 16,808,464	-	4	114	79.60	-1.98	0.68	0.848262
10835	dm3.chr3R	16,813,687 – 16,813,788	- - - intron="intron;ID=intron_FBgn0013995:3_FBgn0013995:5;Name=Calx-in;Parent=FBtr0083999;parent_type=mRNA" - - - -	14886	16,813,687 – 16,813,788	+	6	103	73.16	-1.62	0.48	0.709532
10835	dm3.chr3R	16,813,687 – 16,813,788		14887	16,813,687 – 16,813,788	-	6	103	73.16	-2.95	0.42	0.990379
10836	dm3.chr3R	16,814,647 – 16,814,740	- - - intron="intron;ID=intron_FBgn0013995:3_FBgn0013995:5;Name=Calx-in;Parent=FBtr0083999;parent_type=mRNA" - - - -	14888	16,814,647 – 16,814,740	-	6	95	59.79	-1.02	0.43	0.907590
10837	dm3.chr3R	16,814,846 – 16,814,998	- - - intron="intron;ID=intron_FBgn0013995:3_FBgn0013995:5;Name=Calx-in;Parent=FBtr0083999;parent_type=mRNA" - - - -	14889	16,814,846 – 16,814,998	-	6	163	74.77	-1.08	0.59	0.518991
10838	dm3.chr3R	16,817,972 – 16,818,063	- - - - - - - -	14890	16,817,972 – 16,818,063	+	8	114	64.01	-0.93	0.55	0.922082
10839	dm3.chr3R	16,827,885 – 16,827,939	- - - intron="intron;ID=intron_FBgn0013995:5_FBgn0013995:6;Name=Calx-in;Parent=FBtr0083998,FBtr0083999,FBtr0084000;parent_type=mRNA" - - - -	14891	16,827,885 – 16,827,939	-	3	54	97.53	-1.90	0.94	0.895606
10840	dm3.chr3R	16,828,360 – 16,828,493	- - - intron="intron;ID=intron_FBgn0013995:5_FBgn0013995:6;Name=Calx-in;Parent=FBtr0083998,FBtr0083999,FBtr0084000;parent_type=mRNA" - - - -	14892	16,828,360 – 16,828,461	+	7	117	72.80	-1.90	0.37	0.534075
10840	dm3.chr3R	16,828,360 – 16,828,493		14893	16,828,390 – 16,828,493	-	7	118	77.38	-1.69	0.50	0.556336
10841	dm3.chr3R	16,869,349 – 16,869,518	- - - - - - - -	14894	16,869,349 – 16,869,452	+	8	106	73.61	-1.41	0.50	0.744470
10841	dm3.chr3R	16,869,349 – 16,869,518	- - - - - - - -	14895	16,869,418 – 16,869,518	+	10	110	62.07	-2.26	0.17	0.686161
10842	dm3.chr3R	16,869,994 – 16,870,108	- - CDS="CDS;ID=CDS_FBgn0038847:1_212;Name=CG12278-cds;Parent=FBtr0084003;parent_type=mRNA" - - - - -	14896	16,869,994 – 16,870,108	-	12	117	74.11	-0.88	0.54	0.562748
10843	dm3.chr3R	16,929,926 – 16,930,018	- - - intron="intron;ID=intron_CG5745:4_CG5745:5;Name=CG5745-in;Parent=FBtr0084008;parent_type=mRNA" - - - -	14897	16,929,926 – 16,930,018	+	6	92	78.62	-1.29	0.68	0.730643
10844	dm3.chr3R	16,935,547 – 16,935,605	- - - intron="intron;ID=intron_CG5760:3_CG5760:4;Name=rtet-in;Parent=FBtr0084009;parent_type=mRNA" - - - -	14898	16,935,547 – 16,935,605	+	9	72	64.60	-1.61	0.47	0.981834
10845	dm3.chr3R	16,949,780 – 16,949,880	- - - intron="intron;ID=intron_CG3412:2_CG3412:3;Name=slmb-in;Parent=FBtr0084032;parent_type=mRNA" - - - -	14899	16,949,780 – 16,949,880	+	7	104	71.51	-2.51	0.50	0.996000
10845	dm3.chr3R	16,949,780 – 16,949,880		14900	16,949,780 – 16,949,880	-	7	104	71.51	-1.67	0.37	0.526649
10846	dm3.chr3R	16,958,091 – 16,958,182	- - CDS="CDS;ID=CDS_FBgn0038860:5_140;Name=CG10825-cds;Parent=FBtr0113258;parent_type=mRNA" - - - - -	14901	16,958,091 – 16,958,182	-	4	91	89.19	-1.83	0.81	0.722840
10847	dm3.chr3R	16,983,510 – 16,983,612	- - - intron="intron;ID=intron_FBgn0025803:8_FBgn0025803:9;Name=SNF4Agamma-in;Parent=FBtr0301589;parent_type=mRNA" - - - -	14902	16,983,510 – 16,983,612	-	7	122	59.64	-0.62	0.43	0.639610
10848	dm3.chr3R	16,998,112 – 16,998,228	- - - - - - - -	14903	16,998,112 – 16,998,228	+	6	122	73.40	-1.73	0.47	0.752941
10849	dm3.chr3R	17,031,183 – 17,031,283	- - CDS="CDS;ID=CDS_FBgn0025803:27_37;Name=SNF4Agamma-cds;Parent=FBtr0084024;parent_type=mRNA" intron="intron;ID=intron_FBgn0025803:26_FBgn0025803:28;Name=SNF4Agamma-in;Parent=FBtr0110939,FBtr0110938,FBtr0084018,FBtr0084019,FBtr0084020,FBtr0084021,FBtr0084022,FBtr0112915,FBtr0112916,FBtr0301585,FBtr0301586,FBtr0301587,FBtr0301588,FBtr0301589;parent_type=mRNA" - - - -	14904	17,031,183 – 17,031,283	-	6	112	80.92	-1.69	0.71	0.846982
10850	dm3.chr3R	17,036,475 – 17,036,596	- - CDS="CDS;ID=CDS_FBgn0025803:31_152;Name=SNF4Agamma-cds;Parent=FBtr0301588,FBtr0301589;parent_type=mRNA" - - - - -	14905	17,036,475 – 17,036,580	-	15	113	72.41	-0.46	0.58	0.638241
10850	dm3.chr3R	17,036,475 – 17,036,596		14906	17,036,501 – 17,036,596	-	15	120	82.06	-1.39	0.70	0.621699
10851	dm3.chr3R	17,036,727 – 17,036,826	- - CDS="CDS;ID=CDS_FBgn0025803:31_51;Name=SNF4Agamma-cds;Parent=FBtr0084018,FBtr0084019;parent_type=mRNA" - - - - -	14907	17,036,727 – 17,036,826	-	13	109	75.47	-2.13	0.39	0.878516
10852	dm3.chr3R	17,040,507 – 17,040,562	- - - - - - - -	14908	17,040,507 – 17,040,562	-	3	56	91.07	-1.47	0.87	0.563882
10853	dm3.chr3R	17,060,708 – 17,060,806	- - - intron="intron;ID=intron_CG3331:1_CG3331:2;Name=e-in;Parent=FBtr0084106;parent_type=mRNA" - - - -	14909	17,060,708 – 17,060,806	+	12	110	69.77	-1.63	0.56	0.988790
10853	dm3.chr3R	17,060,708 – 17,060,806		14910	17,060,708 – 17,060,806	-	12	110	69.77	-1.96	0.32	0.774267
10854	dm3.chr3R	17,077,143 – 17,077,312	- - - intron="intron;ID=intron_CG5911:1_CG5911:2;Name=ETHR-in;Parent=FBtr0084053,FBtr0084054;parent_type=mRNA" - - - -	14911	17,077,143 – 17,077,235	-	11	116	74.89	-1.45	0.60	0.917418
				14912	17,077,196 – 17,077,301	-	8	107	78.34	-1.06	0.66	0.640540
				14913	17,077,207 – 17,077,312	-	6	108	77.23	-1.07	0.64	0.551325
10855	dm3.chr3R	17,077,940 – 17,078,051	- - - intron="intron;ID=intron_CG5911:1_CG5911:2;Name=ETHR-in;Parent=FBtr0084053,FBtr0084054;parent_type=mRNA" - - - -	14914	17,077,940 – 17,078,051	-	8	120	67.91	-1.78	0.31	0.630010
10856	dm3.chr3R	17,079,542 – 17,079,633	- - - intron="intron;ID=intron_CG5911:1_CG5911:2;Name=ETHR-in;Parent=FBtr0084053,FBtr0084054;parent_type=mRNA" - - - -	14915	17,079,542 – 17,079,633	+	8	119	77.89	-1.84	0.65	0.892798
10857	dm3.chr3R	17,083,224 – 17,083,325	- - - intron="intron;ID=intron_CG5911:1_CG5911:2;Name=ETHR-in;Parent=FBtr0084053,FBtr0084054;parent_type=mRNA" - - - -	14916	17,083,224 – 17,083,317	+	9	111	67.35	-1.44	0.47	0.905029
				14917	17,083,224 – 17,083,317	-	9	111	67.35	-1.38	0.38	0.540216
				14918	17,083,233 – 17,083,325	+	9	112	65.11	-1.80	0.30	0.645162
10858	dm3.chr3R	17,091,686 – 17,091,838	- - - - - - - -	14919	17,091,686 – 17,091,838	-	8	177	75.35	-2.52	0.55	0.988660
10859	dm3.chr3R	17,094,655 – 17,094,757	- - - - - - - -	14920	17,094,655 – 17,094,757	+	12	118	76.08	-2.32	0.46	0.959375
10860	dm3.chr3R	17,095,336 – 17,095,438	- - - - - - - -	14921	17,095,336 – 17,095,438	-	14	111	69.35	-0.76	0.52	0.818330
10861	dm3.chr3R	17,108,051 – 17,108,158	- - - intron="intron;ID=intron_FBgn0038880:5_FBgn0038880:4;Name=SIFR-in;Parent=FBtr0084098,FBtr0301815;parent_type=mRNA" - - - -	14922	17,108,051 – 17,108,143	+	12	120	70.69	-1.63	0.42	0.778741
				14923	17,108,051 – 17,108,143	-	12	120	70.69	-1.42	0.51	0.891712
				14924	17,108,063 – 17,108,158	+	11	120	74.30	-2.15	0.44	0.897950
				14925	17,108,063 – 17,108,158	-	11	120	74.30	-1.61	0.45	0.564421
10862	dm3.chr3R	17,110,708 – 17,110,780	- - - intron="intron;ID=intron_FBgn0038880:6_FBgn0038880:5;Name=SIFR-in;Parent=FBtr0084099,FBtr0084098,FBtr0301815;parent_type=mRNA" - - - -	14926	17,110,708 – 17,110,780	+	6	72	86.61	-2.55	0.79	0.980017
10862	dm3.chr3R	17,110,708 – 17,110,780		14927	17,110,708 – 17,110,780	-	6	72	86.61	-2.58	0.71	0.956993
10863	dm3.chr3R	17,113,102 – 17,113,207	- - - intron="intron;ID=intron_FBgn0038880:6_FBgn0038880:5;Name=SIFR-in;Parent=FBtr0084099,FBtr0084098,FBtr0301815;parent_type=mRNA" - - - -	14928	17,113,102 – 17,113,207	-	9	115	78.74	-1.87	0.50	0.738275
10864	dm3.chr3R	17,123,616 – 17,123,736	FBnoncoding="ncRNA;ID=FBtr0084058;Name=Hsromega-RB;Parent=FBgn0001234;Alias=Hsr-omega-1;Dbxref=FlyBase_Annotation_IDs:CR31400-RB,REFSEQ:NR_002068;score_text=Weakly" - - - - "Noncode_2.0=n4885_u4296_U18307_hsr-omega\|3.1e-60" "unique_Noncode_2.0=u4296_hsr-omega\|2.7e-60" -	14929	17,123,616 – 17,123,717	+	8	109	61.26	-2.13	0.39	0.994783
10864	dm3.chr3R	17,123,616 – 17,123,736		14930	17,123,643 – 17,123,736	+	8	101	60.69	-2.61	0.42	0.999478
10865	dm3.chr3R	17,143,207 – 17,143,319	- - - - - - - -	14931	17,143,207 – 17,143,319	+	3	120	86.87	-1.34	0.86	0.567914
10866	dm3.chr3R	17,154,769 – 17,154,870	- - - intron="intron;ID=intron_FBgn0038881:12_FBgn0038881:11;Name=CG16791-in;Parent=FBtr0084095;parent_type=mRNA" - - - -	14932	17,154,769 – 17,154,870	-	5	102	79.59	-1.44	0.69	0.714716
10867	dm3.chr3R	17,160,238 – 17,160,388	- - CDS="CDS;ID=CDS_FBgn0038881:12_150;Name=CG16791-cds;Parent=FBtr0084095;parent_type=mRNA" - - - - -	14933	17,160,238 – 17,160,333	+	13	100	95.50	-3.61	0.93	0.997903
				14934	17,160,238 – 17,160,333	-	13	100	95.50	-1.22	0.96	0.752228
				14935	17,160,297 – 17,160,388	+	13	97	93.84	-2.06	0.78	0.697985
10868	dm3.chr3R	17,175,214 – 17,175,277	- - - - - - - -	14936	17,175,214 – 17,175,277	+	8	63	74.01	-0.80	0.70	0.729037
10869	dm3.chr3R	17,184,978 – 17,185,075	- - - intron="intron;ID=intron_FBgn0002781:27_FBgn0002781:16;Name=mod(mdg4)-in;Parent=FBtr0084070;parent_type=mRNA" - - - -	14937	17,184,978 – 17,185,075	+	5	97	81.22	-1.54	0.71	0.707690
10870	dm3.chr3R	17,198,093 – 17,198,185	- - - intron="intron;ID=intron_FBgn0002781:27_FBgn0002781:25;Name=mod(mdg4)-in;Parent=FBtr0084074;parent_type=mRNA" - - - -	14938	17,198,093 – 17,198,185	-	5	107	74.83	-1.52	0.67	0.835458
10871	dm3.chr3R	17,200,013 – 17,200,103	- - - intron="intron;ID=intron_FBgn0002781:27_FBgn0002781:26;Name=mod(mdg4)-in;Parent=FBtr0084073;parent_type=mRNA" - - - -	14939	17,200,013 – 17,200,103	+	10	113	69.92	-3.92	0.34	0.999362
10871	dm3.chr3R	17,200,013 – 17,200,103		14940	17,200,013 – 17,200,103	-	10	113	69.92	-4.57	0.47	0.999949
10872	dm3.chr3R	17,200,482 – 17,200,579	- - - intron="intron;ID=intron_FBgn0002781:27_FBgn0002781:26;Name=mod(mdg4)-in;Parent=FBtr0084073;parent_type=mRNA" - - - -	14941	17,200,482 – 17,200,579	-	10	114	58.47	-0.99	0.55	0.993158
10873	dm3.chr3R	17,216,968 – 17,217,078	- - - - - - - -	14942	17,216,968 – 17,217,078	-	7	113	69.80	-2.30	0.64	0.998180
10874	dm3.chr3R	17,264,531 – 17,264,636	- - - - - - - -	14943	17,264,531 – 17,264,636	+	9	110	69.88	-0.92	0.49	0.762421
10875	dm3.chr3R	17,267,322 – 17,267,408	- - - - - - - -	14944	17,267,322 – 17,267,408	-	5	86	96.98	-1.71	0.93	0.824547
10876	dm3.chr3R	17,277,003 – 17,277,055	- - - - - - - -	14945	17,277,003 – 17,277,055	-	3	52	92.31	-1.85	0.94	0.932394
10877	dm3.chr3R	17,282,092 – 17,282,184	- - - - - - - -	14946	17,282,092 – 17,282,184	-	10	108	74.94	-0.75	0.70	0.627096
10878	dm3.chr3R	17,282,463 – 17,282,588	- - - - - - - -	14947	17,282,463 – 17,282,565	+	6	102	79.68	-1.33	0.67	0.619848
				14948	17,282,463 – 17,282,565	-	6	102	79.68	-1.72	0.65	0.846025
				14949	17,282,495 – 17,282,588	-	6	93	75.52	-1.16	0.58	0.537645
10879	dm3.chr3R	17,292,044 – 17,292,135	- - - - - - - -	14950	17,292,044 – 17,292,135	-	12	112	71.00	-1.42	0.46	0.759127
10880	dm3.chr3R	17,293,994 – 17,294,095	- - - - - - - -	14951	17,293,994 – 17,294,095	-	12	110	75.44	-2.21	0.51	0.978347
10881	dm3.chr3R	17,294,902 – 17,294,993	- - - - - - - -	14952	17,294,902 – 17,294,993	-	12	112	64.77	-0.61	0.49	0.682449
10882	dm3.chr3R	17,298,499 – 17,298,589	- - - - - - - -	14953	17,298,499 – 17,298,589	-	8	114	71.20	-1.48	0.53	0.872706
10883	dm3.chr3R	17,307,681 – 17,307,795	- - - - - - - -	14954	17,307,681 – 17,307,795	+	5	115	75.55	-1.65	0.63	0.902051
10884	dm3.chr3R	17,311,882 – 17,311,972	- - CDS="CDS;ID=CDS_FBgn0038889:4_221;Name=CG7922-cds;Parent=FBtr0084109;parent_type=mRNA" - - - - -	14955	17,311,882 – 17,311,972	-	12	117	65.29	-1.35	0.37	0.662748
10885	dm3.chr3R	17,313,560 – 17,313,716	- - - - - - - -	14956	17,313,560 – 17,313,716	-	6	168	65.32	-2.19	0.42	0.991206
10886	dm3.chr3R	17,327,308 – 17,327,367	- - - intron="intron;ID=intron_CG7937:1_CG7937:2;Name=C15-in;Parent=FBtr0084111;parent_type=mRNA" - - - -	14957	17,327,308 – 17,327,367	+	7	63	72.41	-1.72	0.56	0.933777
10887	dm3.chr3R	17,328,534 – 17,328,614	- - - intron="intron;ID=intron_CG7937:2_CG7937:3;Name=C15-in;Parent=FBtr0084111;parent_type=mRNA" - - - -	14958	17,328,534 – 17,328,614	+	10	89	77.15	-2.27	0.46	0.898017
10887	dm3.chr3R	17,328,534 – 17,328,614		14959	17,328,534 – 17,328,614	-	10	89	77.15	-1.85	0.53	0.849676
10888	dm3.chr3R	17,333,595 – 17,333,657	- - - intron="intron;ID=intron_CG7937:3_CG7937:4;Name=C15-in;Parent=FBtr0084111;parent_type=mRNA" - - - -	14960	17,333,595 – 17,333,657	-	10	64	81.20	-2.55	0.39	0.735323
10889	dm3.chr3R	17,335,636 – 17,335,729	- - - intron="intron;ID=intron_CG7937:3_CG7937:4;Name=C15-in;Parent=FBtr0084111;parent_type=mRNA" - - - -	14961	17,335,636 – 17,335,729	+	11	114	67.64	-1.77	0.40	0.904514
10890	dm3.chr3R	17,343,514 – 17,343,610	- - - - - - - -	14962	17,343,514 – 17,343,610	-	7	107	72.90	-1.41	0.58	0.869201
10891	dm3.chr3R	17,356,510 – 17,356,608	- - - - - - - -	14963	17,356,510 – 17,356,608	-	9	107	79.34	-1.76	0.55	0.763384
10892	dm3.chr3R	17,356,905 – 17,357,026	- - - - - - - -	14964	17,356,905 – 17,357,002	-	12	114	82.03	-2.32	0.63	0.950399
				14965	17,356,925 – 17,357,026	+	10	109	87.68	-1.45	0.88	0.834553
				14966	17,356,925 – 17,357,026	-	10	109	87.68	-1.75	0.78	0.766747
10893	dm3.chr3R	17,357,298 – 17,357,390	- - CDS="CDS;ID=CDS_CG15499:3_41;Name=CG15499-cds;Parent=FBtr0084124;parent_type=mRNA" - - - - -	14967	17,357,298 – 17,357,390	+	12	117	84.33	-1.41	0.73	0.509687
10894	dm3.chr3R	17,357,991 – 17,358,102	- - - - - - - -	14968	17,357,991 – 17,358,102	+	12	120	81.67	-1.93	0.54	0.728371
10895	dm3.chr3R	17,359,911 – 17,360,007	- - - - - - - -	14969	17,359,911 – 17,360,007	+	11	102	73.02	-1.58	0.56	0.962588
10896	dm3.chr3R	17,364,718 – 17,364,849	- - - - - - - -	14970	17,364,718 – 17,364,817	+	11	111	72.31	-0.96	0.49	0.593230
				14971	17,364,740 – 17,364,849	+	12	116	74.65	-1.20	0.55	0.794749
				14972	17,364,740 – 17,364,849	-	12	116	74.65	-1.02	0.60	0.797882
10897	dm3.chr3R	17,365,364 – 17,365,454	- - - - - - - -	14973	17,365,364 – 17,365,454	-	9	104	65.07	-1.30	0.40	0.558930
10898	dm3.chr3R	17,366,214 – 17,366,327	- - - - - - - -	14974	17,366,214 – 17,366,327	+	7	130	74.09	-1.69	0.53	0.770156
10898	dm3.chr3R	17,366,214 – 17,366,327	- - - - - - - -	14975	17,366,214 – 17,366,327	-	7	130	74.09	-1.92	0.49	0.809411
10899	dm3.chr3R	17,367,528 – 17,367,581	- - - - - - - -	14976	17,367,528 – 17,367,581	-	6	53	91.82	-1.24	0.95	0.797701
10900	dm3.chr3R	17,369,838 – 17,369,893	- - - - - - - -	14977	17,369,838 – 17,369,893	+	6	55	66.99	-0.91	0.51	0.801457
10900	dm3.chr3R	17,369,838 – 17,369,893	- - - - - - - -	14978	17,369,838 – 17,369,893	-	6	55	66.99	-1.66	0.40	0.898419
10901	dm3.chr3R	17,381,982 – 17,382,080	- - CDS="CDS;ID=CDS_CG6534:1_12;Name=slou-cds;Parent=FBtr0084123;parent_type=mRNA" - - - - -	14979	17,381,982 – 17,382,080	+	11	104	84.43	-1.12	0.82	0.613250
10902	dm3.chr3R	17,384,501 – 17,384,592	- - - - - - - -	14980	17,384,501 – 17,384,592	+	12	92	98.35	-0.94	0.99	0.585663
10903	dm3.chr3R	17,385,382 – 17,385,438	- - - - - - - -	14981	17,385,382 – 17,385,438	+	12	56	98.54	-2.33	0.98	0.982853
10903	dm3.chr3R	17,385,382 – 17,385,438	- - - - - - - -	14982	17,385,382 – 17,385,438	-	12	56	98.54	-1.86	1.00	0.963561
10904	dm3.chr3R	17,386,790 – 17,386,883	- - - - - - - -	14983	17,386,790 – 17,386,883	-	12	119	83.97	-1.38	0.76	0.684224
10905	dm3.chr3R	17,389,679 – 17,389,779	- - - - - - - -	14984	17,389,679 – 17,389,779	+	12	118	83.96	-1.26	0.78	0.626869
10906	dm3.chr3R	17,390,861 – 17,390,918	- - - - - - - -	14985	17,390,861 – 17,390,918	+	3	57	84.15	-1.54	0.88	0.826753
10907	dm3.chr3R	17,410,181 – 17,410,322	- - - intron="intron;ID=intron_FBgn0013984:11_FBgn0013984:10;Name=InR-in;Parent=FBtr0084121,FBtr0290230,FBtr0290231,FBtr0290232;parent_type=mRNA" - - - -	14986	17,410,181 – 17,410,282	+	5	104	91.46	-2.63	0.79	0.945996
				14987	17,410,181 – 17,410,282	-	5	104	91.46	-1.91	0.87	0.871416
				14988	17,410,208 – 17,410,322	+	5	117	85.69	-2.06	0.72	0.764195
10908	dm3.chr3R	17,411,223 – 17,411,357	- - - intron="intron;ID=intron_FBgn0013984:11_FBgn0013984:10;Name=InR-in;Parent=FBtr0084121,FBtr0290230,FBtr0290231,FBtr0290232;parent_type=mRNA" - - - -	14989	17,411,223 – 17,411,329	+	7	116	64.09	-1.40	0.41	0.814655
10908	dm3.chr3R	17,411,223 – 17,411,357		14990	17,411,262 – 17,411,357	+	5	108	86.84	-1.63	0.81	0.694790
10909	dm3.chr3R	17,421,536 – 17,421,645	- - - - - - - -	14991	17,421,536 – 17,421,645	+	5	109	95.41	-2.65	0.93	0.987053
10909	dm3.chr3R	17,421,536 – 17,421,645	- - - - - - - -	14992	17,421,536 – 17,421,645	-	5	109	95.41	-2.85	0.91	0.988985
10910	dm3.chr3R	17,422,415 – 17,422,486	- - - - - - - -	14993	17,422,415 – 17,422,486	+	5	71	99.44	-2.44	0.99	0.986240
10910	dm3.chr3R	17,422,415 – 17,422,486	- - - - - - - -	14994	17,422,415 – 17,422,486	-	5	71	99.44	-2.70	1.00	0.993061
10911	dm3.chr3R	17,423,391 – 17,423,447	- - - - - - - -	14995	17,423,391 – 17,423,447	+	7	56	93.03	-2.21	0.81	0.846101
10912	dm3.chr3R	17,424,774 – 17,424,872	- - - - - - - -	14996	17,424,774 – 17,424,872	-	4	100	66.28	-2.27	0.48	0.987262
10913	dm3.chr3R	17,427,110 – 17,427,209	- - - - - - - -	14997	17,427,110 – 17,427,209	+	8	112	63.23	-2.36	0.21	0.727060
10913	dm3.chr3R	17,427,110 – 17,427,209	- - - - - - - -	14998	17,427,110 – 17,427,209	-	8	112	63.23	-1.75	0.30	0.713252
10914	dm3.chr3R	17,432,860 – 17,432,944	- - - intron="intron;ID=intron_FBgn0013984:15_FBgn0013984:14;Name=InR-in;Parent=FBtr0084121;parent_type=mRNA" - - - -	14999	17,432,860 – 17,432,944	+	5	84	96.67	-2.18	0.99	0.982464
10915	dm3.chr3R	17,433,833 – 17,433,950	- - - intron="intron;ID=intron_FBgn0013984:15_FBgn0013984:14;Name=InR-in;Parent=FBtr0084121;parent_type=mRNA" - - - -	15000	17,433,833 – 17,433,950	+	5	118	90.37	-2.33	0.77	0.887957
10915	dm3.chr3R	17,433,833 – 17,433,950		15001	17,433,833 – 17,433,950	-	5	118	90.37	-1.74	0.80	0.622919
10916	dm3.chr3R	17,448,219 – 17,448,297	FBnoncoding="pre_miRNA;ID=FBtr0304412;Name=mir-11-RM;Parent=FBgn0262434;Alias=CR42992-RM;Dbxref=FlyBase_Annotation_IDs:CR42992-RM,miRBase:MI0000131" - - intron="intron;ID=intron_CG6376:7_CG6376:8;Name=E2f-in;Parent=FBtr0084117,FBtr0084118,FBtr0084119;parent_type=mRNA" "Rfam_10.0=RF00813;mir-11;AASR01031502.1/1-45\|4.3e-18" - - "mirBase_v16=dsi-mir-11\|4.1e-37"	15002	17,448,219 – 17,448,297	+	14	96	74.22	-2.33	0.63	0.997521
10916	dm3.chr3R	17,448,219 – 17,448,297		15003	17,448,219 – 17,448,297	-	14	96	74.22	-3.43	0.64	0.999791
10917	dm3.chr3R	17,450,885 – 17,451,001	- - CDS="CDS;ID=CDS_CG6376:5_37;Name=E2f-cds;Parent=FBtr0084117,FBtr0084118,FBtr0084119;parent_type=mRNA" - - - - -	15004	17,450,885 – 17,451,001	+	15	120	73.01	-2.10	0.31	0.820642
10918	dm3.chr3R	17,459,545 – 17,459,658	- - - - - - - -	15005	17,459,545 – 17,459,658	+	5	115	93.67	-1.70	0.92	0.861196
10919	dm3.chr3R	17,462,965 – 17,463,102	- - - - - - - -	15006	17,462,965 – 17,463,063	+	5	99	77.74	-0.96	0.76	0.589307
				15007	17,463,004 – 17,463,102	+	6	102	74.07	-2.63	0.57	0.996321
				15008	17,463,004 – 17,463,102	-	6	102	74.07	-1.86	0.44	0.735109
10920	dm3.chr3R	17,472,692 – 17,472,755	- - - intron="intron;ID=intron_CG6376:1_CG6376:2;Name=E2f-in;Parent=FBtr0084117;parent_type=mRNA" - - - -	15009	17,472,692 – 17,472,755	+	6	70	74.80	-1.84	0.63	0.958845
10921	dm3.chr3R	17,481,216 – 17,481,270	- - - intron="intron;ID=intron_CG6376:1_CG6376:2;Name=E2f-in;Parent=FBtr0084117;parent_type=mRNA" - - - -	15010	17,481,216 – 17,481,270	+	8	57	72.22	-1.23	0.64	0.940204
10921	dm3.chr3R	17,481,216 – 17,481,270		15011	17,481,216 – 17,481,270	-	8	57	72.22	-1.05	0.50	0.533149
10922	dm3.chr3R	17,508,340 – 17,508,436	- - - intron="intron;ID=intron_CG31176:1_CG31176:2;Name=CG31176-in;Parent=FBtr0084114;parent_type=mRNA" - - - -	15012	17,508,340 – 17,508,436	+	8	97	84.90	-2.18	0.64	0.790288
10923	dm3.chr3R	17,509,820 – 17,509,932	- - - intron="intron;ID=intron_CG31176:1_CG31176:2;Name=CG31176-in;Parent=FBtr0084114;parent_type=mRNA" - - - -	15013	17,509,820 – 17,509,932	-	5	113	87.60	-1.89	0.86	0.920147
10924	dm3.chr3R	17,510,504 – 17,510,607	- - - intron="intron;ID=intron_CG31176:1_CG31176:2;Name=CG31176-in;Parent=FBtr0084114;parent_type=mRNA" - - - -	15014	17,510,504 – 17,510,607	+	4	105	80.99	-0.92	0.98	0.834246
10924	dm3.chr3R	17,510,504 – 17,510,607		15015	17,510,504 – 17,510,607	-	4	105	80.99	-1.21	0.82	0.566409
10925	dm3.chr3R	17,525,914 – 17,525,974	- - - intron="intron;ID=intron_CG31176:1_CG31176:2;Name=CG31176-in;Parent=FBtr0084114;parent_type=mRNA" - - - -	15016	17,525,914 – 17,525,974	-	5	60	90.50	-1.79	0.97	0.967287
10926	dm3.chr3R	17,544,891 – 17,545,038	- - CDS="CDS;ID=CDS_CG31176:1_71;Name=CG31176-cds;Parent=FBtr0084114;parent_type=mRNA" - - - - -	15017	17,544,891 – 17,545,011	-	8	121	76.75	-2.02	0.63	0.977767
				15018	17,544,931 – 17,545,036	-	11	105	87.03	-1.97	0.68	0.810491
				15019	17,544,933 – 17,545,038	-	11	105	86.84	-1.70	0.69	0.650057
10927	dm3.chr3R	17,546,599 – 17,546,689	- - - - - - - -	15020	17,546,599 – 17,546,689	-	7	90	95.45	-2.14	0.89	0.912678
10928	dm3.chr3R	17,548,727 – 17,548,859	- - - - - - - -	15021	17,548,727 – 17,548,859	-	9	142	84.29	-1.83	0.60	0.545857
10929	dm3.chr3R	17,551,656 – 17,551,755	- - - - - - - -	15022	17,551,656 – 17,551,755	+	7	101	74.48	-1.83	0.60	0.979966
10929	dm3.chr3R	17,551,656 – 17,551,755	- - - - - - - -	15023	17,551,656 – 17,551,755	-	7	101	74.48	-1.59	0.51	0.859315
10930	dm3.chr3R	17,576,600 – 17,576,650	- - CDS="CDS;ID=CDS_CG31233:2_77;Name=CG31233-cds;Parent=FBtr0084127;parent_type=mRNA" - - - - -	15024	17,576,600 – 17,576,650	-	5	50	89.80	-1.77	0.91	0.924093
10931	dm3.chr3R	17,583,029 – 17,583,127	- - - intron="intron;ID=intron_CG31198:4_CG31198:5;Name=CG31198-in;Parent=FBtr0084128;parent_type=mRNA" - - - -	15025	17,583,029 – 17,583,127	+	11	109	59.21	-0.76	0.36	0.588556
10932	dm3.chr3R	17,587,036 – 17,587,224	- - - intron="intron;ID=intron_FBgn0259237:5_FBgn0259237:7;Name=CG42335-in;Parent=FBtr0299852;parent_type=mRNA" - - - -	15026	17,587,036 – 17,587,224	-	3	192	50.09	-2.93	0.32	0.996973
10933	dm3.chr3R	17,605,169 – 17,605,243	- - - intron="intron;ID=intron_CG6705:2_CG6705:3;Name=tsl-in;Parent=FBtr0084165,FBtr0084164;parent_type=mRNA" - - - -	15027	17,605,169 – 17,605,243	-	6	86	65.53	-0.29	0.60	0.500000
10934	dm3.chr3R	17,609,366 – 17,609,458	- - - - - - - -	15028	17,609,366 – 17,609,458	+	9	102	67.86	-2.60	0.48	0.998898
10934	dm3.chr3R	17,609,366 – 17,609,458	- - - - - - - -	15029	17,609,366 – 17,609,458	-	9	102	67.86	-1.84	0.43	0.969573
10935	dm3.chr3R	17,623,947 – 17,624,029	FBnoncoding="pre_miRNA;ID=FBtr0304510;Name=mir-999-RM;Parent=FBgn0262331;Alias=CR43038-RM;Dbxref=FlyBase_Annotation_IDs:CR43038-RM,miRBase:MI0005861" - - intron="intron;ID=intron_FBgn0013759:13_FBgn0013759:12;Name=CASK-in;Parent=FBtr0112873;parent_type=mRNA" - - - "mirBase_v16=dme-mir-999\|2.9e-41"	15030	17,623,947 – 17,624,029	-	10	86	91.18	-2.29	0.74	0.812488
10936	dm3.chr3R	17,631,641 – 17,631,742	- - - intron="intron;ID=intron_FBgn0013759:16_FBgn0013759:14;Name=CASK-in;Parent=FBtr0084162;parent_type=mRNA" - - - -	15031	17,631,641 – 17,631,742	+	8	111	71.61	-2.96	0.41	0.996216
10937	dm3.chr3R	17,632,845 – 17,632,965	- - - intron="intron;ID=intron_FBgn0013759:16_FBgn0013759:14;Name=CASK-in;Parent=FBtr0084162;parent_type=mRNA" - - - -	15032	17,632,845 – 17,632,965	-	5	120	90.17	-1.95	0.82	0.827322
10938	dm3.chr3R	17,635,303 – 17,635,356	- - - - - - - -	15033	17,635,303 – 17,635,356	-	3	60	63.16	-0.62	0.73	0.586060
10939	dm3.chr3R	17,640,240 – 17,640,399	- - - - - - - -	15034	17,640,240 – 17,640,351	+	3	111	92.15	-2.75	0.72	0.858197
				15035	17,640,240 – 17,640,351	-	3	111	92.15	-1.84	0.88	0.815761
				15036	17,640,271 – 17,640,391	+	3	120	97.22	-1.48	0.96	0.797485
				15037	17,640,271 – 17,640,391	-	3	120	97.22	-2.23	0.95	0.962862
				15038	17,640,279 – 17,640,399	+	3	120	96.67	-1.11	0.97	0.621175
				15039	17,640,279 – 17,640,399	-	3	120	96.67	-1.24	0.96	0.660279
10940	dm3.chr3R	17,644,281 – 17,644,370	- - - intron="intron;ID=intron_FBgn0013759:21_FBgn0013759:20;Name=CASK-in;Parent=FBtr0084161,FBtr0301327;parent_type=mRNA" - - - -	15040	17,644,281 – 17,644,370	-	6	91	71.91	-2.11	0.36	0.795085
10941	dm3.chr3R	17,663,850 – 17,663,984	- - - - - - - -	15041	17,663,850 – 17,663,956	+	12	117	74.34	-0.88	0.66	0.776648
10941	dm3.chr3R	17,663,850 – 17,663,984	- - - - - - - -	15042	17,663,880 – 17,663,984	+	10	115	84.03	-1.43	0.70	0.594625
10942	dm3.chr3R	17,667,540 – 17,667,631	- - - - - - - -	15043	17,667,540 – 17,667,631	-	6	103	75.41	-1.41	0.57	0.639687
10943	dm3.chr3R	17,677,215 – 17,677,316	- - - - - - - -	15044	17,677,215 – 17,677,316	-	7	102	76.84	-2.09	0.40	0.500000
10944	dm3.chr3R	17,677,770 – 17,677,861	- - - intron="intron;ID=intron_CG6575:1_CG6575:2;Name=glec-in;Parent=FBtr0084157;parent_type=mRNA" - - - -	15045	17,677,770 – 17,677,861	-	6	119	71.53	-1.15	0.54	0.593618
10945	dm3.chr3R	17,679,371 – 17,679,472	- - - intron="intron;ID=intron_CG6575:1_CG6575:2;Name=glec-in;Parent=FBtr0084157;parent_type=mRNA" - - - -	15046	17,679,371 – 17,679,472	-	7	116	67.95	-1.08	0.41	0.508255
10946	dm3.chr3R	17,686,900 – 17,686,966	- - - - - - - -	15047	17,686,900 – 17,686,966	-	3	71	87.79	-1.02	0.93	0.579743
10947	dm3.chr3R	17,703,802 – 17,703,898	- - - intron="intron;ID=intron_FBgn0083984:2_FBgn0083984:1;Name=CG34148-in;Parent=FBtr0301007;parent_type=mRNA" - - - -	15048	17,703,802 – 17,703,898	-	4	96	82.81	-1.98	0.68	0.751890
10948	dm3.chr3R	17,718,234 – 17,718,327	- - - intron="intron;ID=intron_CG6678:4_CG6678:5;Name=CG6678-in;Parent=FBtr0084148;parent_type=mRNA" - - - -	15049	17,718,234 – 17,718,327	-	5	100	85.27	-1.83	0.83	0.905897
10949	dm3.chr3R	17,718,931 – 17,719,047	- - - intron="intron;ID=intron_CG6678:4_CG6678:5;Name=CG6678-in;Parent=FBtr0084148;parent_type=mRNA" - - - -	15050	17,718,931 – 17,719,047	-	5	116	62.87	-1.65	0.31	0.657902
10950	dm3.chr3R	17,726,667 – 17,726,807	- - - intron="intron;ID=intron_CG6678:4_CG6678:5;Name=CG6678-in;Parent=FBtr0084148;parent_type=mRNA" - - - -	15051	17,726,667 – 17,726,772	+	10	112	79.69	-2.11	0.55	0.921796
10950	dm3.chr3R	17,726,667 – 17,726,807		15052	17,726,700 – 17,726,807	+	7	109	81.71	-1.93	0.56	0.693884
10951	dm3.chr3R	17,731,685 – 17,731,779	- - - - - - - -	15053	17,731,685 – 17,731,779	+	5	94	94.68	-1.80	0.87	0.738073
10952	dm3.chr3R	17,742,616 – 17,742,714	- - - - - - - -	15054	17,742,616 – 17,742,714	-	7	116	75.03	-2.09	0.44	0.773202
10953	dm3.chr3R	17,746,165 – 17,746,270	- - - - - - - -	15055	17,746,165 – 17,746,270	+	7	116	69.20	-1.16	0.56	0.912549
10954	dm3.chr3R	17,749,313 – 17,749,377	- - - - - - - -	15056	17,749,313 – 17,749,377	-	3	64	78.95	-0.64	1.03	0.823445
10955	dm3.chr3R	17,760,764 – 17,760,849	- - - - - - - -	15057	17,760,764 – 17,760,849	+	6	99	70.19	-1.83	0.49	0.928468
10956	dm3.chr3R	17,764,834 – 17,764,941	- - - - - - - -	15058	17,764,834 – 17,764,941	-	6	119	82.98	-1.02	0.86	0.647427
10957	dm3.chr3R	17,768,768 – 17,768,887	- - - - - - - -	15059	17,768,768 – 17,768,887	+	3	119	97.20	-2.00	0.93	0.906716
10957	dm3.chr3R	17,768,768 – 17,768,887	- - - - - - - -	15060	17,768,768 – 17,768,887	-	3	119	97.20	-2.06	0.85	0.697622
10958	dm3.chr3R	17,789,095 – 17,789,210	- - - intron="intron;ID=intron_FBgn0013948:3_FBgn0013948:5;Name=Eip93F-in;Parent=FBtr0112874;parent_type=mRNA" - - - -	15061	17,789,095 – 17,789,210	-	7	115	68.72	-2.78	0.39	0.992051
10959	dm3.chr3R	17,807,063 – 17,807,166	- - - intron="intron;ID=intron_FBgn0013948:4_FBgn0013948:5;Name=Eip93F-in;Parent=FBtr0084169;parent_type=mRNA" - - - -	15062	17,807,063 – 17,807,166	+	8	120	78.03	-2.24	0.52	0.892864
10960	dm3.chr3R	17,810,530 – 17,810,620	- - - intron="intron;ID=intron_FBgn0013948:4_FBgn0013948:5;Name=Eip93F-in;Parent=FBtr0084169;parent_type=mRNA" - - - -	15063	17,810,530 – 17,810,620	+	5	92	89.84	-2.96	0.67	0.938581
10960	dm3.chr3R	17,810,530 – 17,810,620		15064	17,810,530 – 17,810,620	-	5	92	89.84	-2.80	0.67	0.904124
10961	dm3.chr3R	17,814,328 – 17,814,443	- - - intron="intron;ID=intron_FBgn0013948:4_FBgn0013948:5;Name=Eip93F-in;Parent=FBtr0084169;parent_type=mRNA" - - - -	15065	17,814,328 – 17,814,443	-	4	116	93.07	-2.33	0.84	0.914457
10962	dm3.chr3R	17,820,621 – 17,820,718	- - - intron="intron;ID=intron_FBgn0013948:4_FBgn0013948:5;Name=Eip93F-in;Parent=FBtr0084169;parent_type=mRNA" - - - -	15066	17,820,621 – 17,820,718	+	9	111	72.55	-1.33	0.51	0.740063
10963	dm3.chr3R	17,822,214 – 17,822,326	- - CDS="CDS;ID=CDS_FBgn0013948:7_72;Name=Eip93F-cds;Parent=FBtr0084169;parent_type=mRNA" - - - - -	15067	17,822,214 – 17,822,326	-	11	117	83.39	-1.72	0.58	0.510291
10964	dm3.chr3R	17,823,965 – 17,824,028	- - - intron="intron;ID=intron_FBgn0013948:7_FBgn0013948:9;Name=Eip93F-in;Parent=FBtr0084169;parent_type=mRNA" - - - -	15068	17,823,965 – 17,824,028	+	4	63	92.86	-1.88	0.81	0.588079
10965	dm3.chr3R	17,824,492 – 17,824,588	- - - intron="intron;ID=intron_FBgn0013948:7_FBgn0013948:9;Name=Eip93F-in;Parent=FBtr0084169;parent_type=mRNA" - - - -	15069	17,824,492 – 17,824,588	+	10	111	81.54	-2.14	0.62	0.918618
10966	dm3.chr3R	17,824,960 – 17,825,054	- - - intron="intron;ID=intron_FBgn0013948:7_FBgn0013948:9;Name=Eip93F-in;Parent=FBtr0084169;parent_type=mRNA" - - - -	15070	17,824,960 – 17,825,054	-	5	100	84.76	-2.01	0.66	0.625959
10967	dm3.chr3R	17,834,948 – 17,834,999	- - - - - - - -	15071	17,834,948 – 17,834,999	+	6	55	74.52	-2.20	0.41	0.821838
10967	dm3.chr3R	17,834,948 – 17,834,999	- - - - - - - -	15072	17,834,948 – 17,834,999	-	6	55	74.52	-3.19	0.49	0.997764
10968	dm3.chr3R	17,838,568 – 17,838,663	- - - - - - - -	15073	17,838,568 – 17,838,663	+	11	101	72.60	-3.95	0.78	0.999832
10969	dm3.chr3R	17,843,919 – 17,844,017	- - - intron="intron;ID=intron_FBgn0038922:5_FBgn0038922:4;Name=CG6439-in;Parent=FBtr0084190,FBtr0300788;parent_type=mRNA" - - - -	15074	17,843,919 – 17,844,017	-	4	101	89.97	-2.52	0.80	0.945772
10970	dm3.chr3R	17,865,503 – 17,865,593	- - - - - - - -	15075	17,865,503 – 17,865,593	+	5	91	74.92	-1.80	0.60	0.938111
10971	dm3.chr3R	17,869,810 – 17,869,904	- - - intron="intron;ID=intron_FBgn0017397:2_FBgn0017397:3;Name=how-in;Parent=FBtr0084178,FBtr0084177,FBtr0100514,FBtr0301401,FBtr0301402;parent_type=mRNA" - - - -	15076	17,869,810 – 17,869,904	-	5	94	91.12	-1.99	0.77	0.626364
10972	dm3.chr3R	17,872,652 – 17,872,767	- - - intron="intron;ID=intron_FBgn0017397:2_FBgn0017397:3;Name=how-in;Parent=FBtr0084178,FBtr0084177,FBtr0100514,FBtr0301401,FBtr0301402;parent_type=mRNA" - - - -	15077	17,872,652 – 17,872,744	+	5	104	89.12	-1.50	0.95	0.906542
				15078	17,872,676 – 17,872,767	+	5	103	89.00	-2.35	0.98	0.992516
				15079	17,872,676 – 17,872,767	-	5	103	89.00	-1.45	0.94	0.876413
10973	dm3.chr3R	17,874,827 – 17,874,879	- - - intron="intron;ID=intron_FBgn0017397:2_FBgn0017397:3;Name=how-in;Parent=FBtr0084178,FBtr0084177,FBtr0100514,FBtr0301401,FBtr0301402;parent_type=mRNA" - - - -	15080	17,874,827 – 17,874,879	-	5	53	98.09	-1.36	0.99	0.839543
10974	dm3.chr3R	17,878,145 – 17,878,199	- - - intron="intron;ID=intron_FBgn0017397:2_FBgn0017397:3;Name=how-in;Parent=FBtr0084178,FBtr0084177,FBtr0100514,FBtr0301401,FBtr0301402;parent_type=mRNA" - - - -	15081	17,878,145 – 17,878,199	-	7	69	75.86	-0.82	0.85	0.763905
10975	dm3.chr3R	17,878,476 – 17,878,549	- - - intron="intron;ID=intron_FBgn0017397:2_FBgn0017397:3;Name=how-in;Parent=FBtr0084178,FBtr0084177,FBtr0100514,FBtr0301401,FBtr0301402;parent_type=mRNA" - - - -	15082	17,878,476 – 17,878,549	-	6	81	79.65	-1.64	0.64	0.734501
10976	dm3.chr3R	17,889,780 – 17,889,875	- - - intron="intron;ID=intron_FBgn0017397:3_FBgn0017397:4;Name=how-in;Parent=FBtr0084178,FBtr0084177,FBtr0100514,FBtr0301401,FBtr0301402;parent_type=mRNA" - - - -	15083	17,889,780 – 17,889,875	-	5	98	87.84	-1.59	0.83	0.736800
10977	dm3.chr3R	17,894,066 – 17,894,181	- - - intron="intron;ID=intron_FBgn0017397:3_FBgn0017397:4;Name=how-in;Parent=FBtr0084178,FBtr0084177,FBtr0100514,FBtr0301401,FBtr0301402;parent_type=mRNA" - - - -	15084	17,894,066 – 17,894,181	+	7	135	73.96	-1.63	0.59	0.925051
10978	dm3.chr3R	17,909,982 – 17,910,092	- - - - - - - -	15085	17,909,982 – 17,910,092	+	5	120	72.56	-1.23	0.54	0.569024
10979	dm3.chr3R	17,914,316 – 17,914,435	- - - - - - - -	15086	17,914,316 – 17,914,435	+	4	120	74.16	-2.12	0.66	0.958730
10979	dm3.chr3R	17,914,316 – 17,914,435	- - - - - - - -	15087	17,914,316 – 17,914,435	-	4	120	74.16	-2.07	0.53	0.786445
10980	dm3.chr3R	17,915,553 – 17,915,701	- - - - - - - -	15088	17,915,553 – 17,915,663	+	6	116	72.98	-1.06	0.57	0.619701
				15089	17,915,553 – 17,915,663	-	6	116	72.98	-2.23	0.64	0.995364
				15090	17,915,590 – 17,915,701	-	6	121	69.01	-1.10	0.59	0.864780
10981	dm3.chr3R	17,921,658 – 17,921,724	- - - - - - - -	15091	17,921,658 – 17,921,724	+	3	66	95.96	-0.84	0.99	0.547313
10982	dm3.chr3R	17,922,246 – 17,922,344	- - - - - - - -	15092	17,922,246 – 17,922,344	-	8	103	89.31	-2.19	0.64	0.557995
10983	dm3.chr3R	17,935,152 – 17,935,300	- - - - - - - -	15093	17,935,152 – 17,935,256	+	8	104	79.45	-1.19	0.68	0.626012
				15094	17,935,186 – 17,935,294	+	9	110	85.86	-1.41	0.85	0.832351
				15095	17,935,193 – 17,935,300	+	9	110	86.77	-1.32	0.78	0.543695
10984	dm3.chr3R	17,938,557 – 17,938,657	- - - - - - - -	15096	17,938,557 – 17,938,657	+	9	103	77.86	-1.84	0.45	0.634398
10985	dm3.chr3R	17,950,402 – 17,950,494	- - CDS="CDS;ID=CDS_FBgn0259736:2_94;Name=CG42390-cds;Parent=FBtr0300008;parent_type=mRNA" - - - - -	15097	17,950,402 – 17,950,494	+	4	92	91.12	-2.70	0.86	0.982217
10986	dm3.chr3R	17,955,862 – 17,955,981	- - CDS="CDS;ID=CDS_FBgn0259736:7_94;Name=CG42390-cds;Parent=FBtr0300008;parent_type=mRNA" - - - - -	15098	17,955,862 – 17,955,981	+	7	119	76.39	-2.11	0.50	0.951266
10986	dm3.chr3R	17,955,862 – 17,955,981		15099	17,955,862 – 17,955,981	-	7	119	76.39	-2.01	0.36	0.500000
10987	dm3.chr3R	17,959,196 – 17,959,292	- - - - - - - -	15100	17,959,196 – 17,959,292	-	5	96	87.11	-2.01	0.77	0.853410
10988	dm3.chr3R	17,959,413 – 17,959,469	- - - - - - - -	15101	17,959,413 – 17,959,469	-	7	57	64.89	-1.22	0.44	0.926717
10989	dm3.chr3R	17,960,285 – 17,960,344	- - - intron="intron;ID=intron_FBgn0051163:1_FBgn0051163:2;Name=SKIP-in;Parent=FBtr0084197,FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15102	17,960,285 – 17,960,344	-	9	76	77.90	-1.19	0.63	0.500000
10990	dm3.chr3R	17,963,231 – 17,963,282	- - - intron="intron;ID=intron_FBgn0051163:1_FBgn0051163:2;Name=SKIP-in;Parent=FBtr0084197,FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15103	17,963,231 – 17,963,282	-	5	51	100.00	-1.02	1.00	0.646390
10991	dm3.chr3R	17,963,510 – 17,963,666	- - - intron="intron;ID=intron_FBgn0051163:1_FBgn0051163:2;Name=SKIP-in;Parent=FBtr0084197,FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15104	17,963,510 – 17,963,666	-	6	165	54.33	-2.38	0.16	0.874873
10992	dm3.chr3R	17,967,501 – 17,967,594	- - - intron="intron;ID=intron_FBgn0051163:1_FBgn0051163:2;Name=SKIP-in;Parent=FBtr0084197,FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15105	17,967,501 – 17,967,594	+	5	93	67.00	-1.93	0.38	0.780780
10993	dm3.chr3R	17,981,790 – 17,981,881	- - - intron="intron;ID=intron_FBgn0051163:3_FBgn0051163:4;Name=SKIP-in;Parent=FBtr0084197,FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15106	17,981,790 – 17,981,881	-	8	97	64.91	-1.54	0.30	0.632767
10994	dm3.chr3R	18,005,136 – 18,005,230	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15107	18,005,136 – 18,005,230	+	6	100	79.34	-1.76	0.57	0.657431
10995	dm3.chr3R	18,014,031 – 18,014,168	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15108	18,014,031 – 18,014,129	-	9	123	66.52	-2.26	0.40	0.989426
10995	dm3.chr3R	18,014,031 – 18,014,168		15109	18,014,058 – 18,014,168	-	7	112	78.33	-2.23	0.62	0.982226
10996	dm3.chr3R	18,021,505 – 18,021,578	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15110	18,021,505 – 18,021,578	+	6	74	66.40	-1.58	0.43	0.946527
10996	dm3.chr3R	18,021,505 – 18,021,578		15111	18,021,505 – 18,021,578	-	6	74	66.40	-1.51	0.38	0.829201
10997	dm3.chr3R	18,023,772 – 18,023,864	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15112	18,023,772 – 18,023,864	-	9	112	64.47	-0.94	0.45	0.562331
10998	dm3.chr3R	18,024,971 – 18,025,079	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15113	18,024,971 – 18,025,079	+	10	111	84.41	-1.38	0.73	0.578940
10999	dm3.chr3R	18,025,487 – 18,025,599	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15114	18,025,487 – 18,025,599	-	10	119	83.62	-1.06	0.85	0.722191
11000	dm3.chr3R	18,025,764 – 18,025,823	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15115	18,025,764 – 18,025,823	-	3	62	92.47	-2.71	0.92	0.988744
11001	dm3.chr3R	18,027,939 – 18,028,086	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15116	18,027,939 – 18,028,053	+	8	118	83.28	-1.84	0.69	0.826771
11001	dm3.chr3R	18,027,939 – 18,028,086		15117	18,027,974 – 18,028,086	+	9	120	85.54	-1.33	0.79	0.656810
11002	dm3.chr3R	18,028,110 – 18,028,213	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15118	18,028,110 – 18,028,213	-	5	111	73.15	-1.82	0.65	0.968836
11003	dm3.chr3R	18,028,278 – 18,028,372	- - - intron="intron;ID=intron_FBgn0051163:4_FBgn0051163:5;Name=SKIP-in;Parent=FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15119	18,028,278 – 18,028,372	+	10	107	76.51	-0.63	0.88	0.784814
11004	dm3.chr3R	18,038,571 – 18,038,674	- - CDS="CDS;ID=CDS_FBgn0038934:2_249;Name=Gld2-cds;Parent=FBtr0305038;parent_type=mRNA" - - - - -	15120	18,038,571 – 18,038,674	-	6	112	69.91	-1.44	0.58	0.954912
11005	dm3.chr3R	18,047,104 – 18,047,223	- - - - - - - -	15121	18,047,104 – 18,047,223	+	7	119	79.97	-2.23	0.58	0.943858
11005	dm3.chr3R	18,047,104 – 18,047,223	- - - - - - - -	15122	18,047,104 – 18,047,223	-	7	119	79.97	-2.71	0.37	0.777349
11006	dm3.chr3R	18,049,043 – 18,049,133	- - - - - - - -	15123	18,049,043 – 18,049,133	-	5	104	65.55	-1.70	0.48	0.919453
11007	dm3.chr3R	18,053,493 – 18,053,634	- - - - - - - -	15124	18,053,493 – 18,053,634	+	6	149	60.33	-0.90	0.43	0.685819
11008	dm3.chr3R	18,057,214 – 18,057,313	- - - - - - - -	15125	18,057,214 – 18,057,313	-	7	112	58.62	-2.37	0.21	0.930269
11009	dm3.chr3R	18,064,189 – 18,064,318	- - - - - - - -	15126	18,064,189 – 18,064,318	+	10	162	79.65	-1.53	0.60	0.605772
11010	dm3.chr3R	18,064,875 – 18,064,984	- - - - - - - -	15127	18,064,875 – 18,064,984	+	10	116	71.01	-1.42	0.45	0.774217
11011	dm3.chr3R	18,072,348 – 18,072,413	- - - - - - - -	15128	18,072,348 – 18,072,413	+	5	65	63.85	-0.54	0.50	0.580739
11011	dm3.chr3R	18,072,348 – 18,072,413	- - - - - - - -	15129	18,072,348 – 18,072,413	-	5	65	63.85	-0.99	0.40	0.518681
11012	dm3.chr3R	18,077,464 – 18,077,556	- - - - - - - -	15130	18,077,464 – 18,077,556	-	7	100	83.14	-2.66	0.65	0.976939
11013	dm3.chr3R	18,077,835 – 18,077,891	- - - - - - - -	15131	18,077,835 – 18,077,891	-	8	58	72.70	-1.22	0.46	0.587765
11014	dm3.chr3R	18,081,248 – 18,081,351	- - - - - - - -	15132	18,081,248 – 18,081,351	-	9	114	75.13	-1.09	0.64	0.782032
11015	dm3.chr3R	18,087,413 – 18,087,548	- - - - - - - -	15133	18,087,413 – 18,087,510	+	6	100	80.64	-2.49	0.53	0.919440
				15134	18,087,445 – 18,087,548	+	7	106	72.84	-2.72	0.40	0.988294
				15135	18,087,445 – 18,087,548	-	7	106	72.84	-1.51	0.42	0.589591
11016	dm3.chr3R	18,090,677 – 18,090,781	- - - - - - - -	15136	18,090,677 – 18,090,781	-	8	120	90.30	-0.81	0.96	0.591410
11017	dm3.chr3R	18,096,951 – 18,097,043	- - - - - - - -	15137	18,096,951 – 18,097,043	+	8	114	76.96	-2.45	0.43	0.857942
11018	dm3.chr3R	18,107,668 – 18,107,765	- - - intron="intron;ID=intron_FBgn0051163:10_FBgn0051163:11;Name=SKIP-in;Parent=FBtr0084197,FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - -	15138	18,107,668 – 18,107,765	+	5	97	97.73	-1.50	0.97	0.842039
11019	dm3.chr3R	18,110,567 – 18,110,655	- - CDS="CDS;ID=CDS_FBgn0051163:11_249;Name=SKIP-cds;Parent=FBtr0084197,FBtr0301028,FBtr0305036,FBtr0305037;parent_type=mRNA" - - - - -	15139	18,110,567 – 18,110,655	+	11	95	74.91	-1.05	0.54	0.639192
11020	dm3.chr3R	18,110,826 – 18,110,922	- - - intron="intron;ID=intron_FBgn0051163:11_FBgn0051163:13;Name=SKIP-in;Parent=FBtr0084197,FBtr0301028,FBtr0305036;parent_type=mRNA" - - - -	15140	18,110,826 – 18,110,922	+	9	119	75.73	-2.11	0.46	0.844199
11020	dm3.chr3R	18,110,826 – 18,110,922		15141	18,110,826 – 18,110,922	-	9	119	75.73	-2.32	0.50	0.956212
11021	dm3.chr3R	18,119,861 – 18,119,972	- - - - - - - -	15142	18,119,861 – 18,119,972	+	7	111	76.74	-1.65	0.47	0.519361
11021	dm3.chr3R	18,119,861 – 18,119,972	- - - - - - - -	15143	18,119,861 – 18,119,972	-	7	111	76.74	-1.50	0.50	0.500000
11022	dm3.chr3R	18,131,642 – 18,131,779	- - - - - - - -	15144	18,131,642 – 18,131,751	-	10	114	77.03	-2.05	0.68	0.983969
11022	dm3.chr3R	18,131,642 – 18,131,779	- - - - - - - -	15145	18,131,678 – 18,131,779	-	10	110	75.11	-2.96	0.71	0.999218
11023	dm3.chr3R	18,135,987 – 18,136,078	- - - - - - - -	15146	18,135,987 – 18,136,078	-	7	110	76.63	-2.19	0.50	0.893601
11024	dm3.chr3R	18,139,014 – 18,139,128	- - - intron="intron;ID=intron_FBgn0085406:3_FBgn0085406:2;Name=CG34377-in;Parent=FBtr0112610;parent_type=mRNA" - - - -	15147	18,139,014 – 18,139,128	-	4	118	64.82	-1.80	0.41	0.802792
11025	dm3.chr3R	18,139,727 – 18,139,819	- - - intron="intron;ID=intron_FBgn0085406:3_FBgn0085406:2;Name=CG34377-in;Parent=FBtr0112610;parent_type=mRNA" - - - -	15148	18,139,727 – 18,139,819	-	6	93	85.09	-2.12	0.83	0.969140
11026	dm3.chr3R	18,139,899 – 18,140,002	- - - intron="intron;ID=intron_FBgn0085406:3_FBgn0085406:2;Name=CG34377-in;Parent=FBtr0112610;parent_type=mRNA" - - - -	15149	18,139,899 – 18,139,995	-	8	111	58.78	-1.48	0.25	0.519646
11026	dm3.chr3R	18,139,899 – 18,140,002		15150	18,139,904 – 18,140,002	-	7	102	70.41	-1.66	0.46	0.937758
11027	dm3.chr3R	18,148,737 – 18,148,829	- - - - - - - -	15151	18,148,737 – 18,148,829	+	7	117	67.42	-2.68	0.46	0.996784
11027	dm3.chr3R	18,148,737 – 18,148,829	- - - - - - - -	15152	18,148,737 – 18,148,829	-	7	117	67.42	-1.36	0.47	0.775867
11028	dm3.chr3R	18,151,910 – 18,152,055	- - - - - - - -	15153	18,151,910 – 18,152,055	-	8	163	79.03	-1.73	0.50	0.530460
11029	dm3.chr3R	18,153,674 – 18,153,765	- - - - - - - -	15154	18,153,674 – 18,153,765	-	6	95	78.03	-2.28	0.47	0.857873
11030	dm3.chr3R	18,169,423 – 18,169,525	- - - - - - - -	15155	18,169,423 – 18,169,525	+	7	103	78.46	-1.60	0.61	0.814461
11031	dm3.chr3R	18,170,201 – 18,170,293	- - - - - - - -	15156	18,170,201 – 18,170,293	+	12	108	72.80	-2.65	0.60	0.999058
11031	dm3.chr3R	18,170,201 – 18,170,293	- - - - - - - -	15157	18,170,201 – 18,170,293	-	12	108	72.80	-1.53	0.48	0.860269
11032	dm3.chr3R	18,170,592 – 18,170,707	- - - - - - - -	15158	18,170,592 – 18,170,707	+	8	132	75.75	-2.57	0.41	0.938185
11033	dm3.chr3R	18,176,283 – 18,176,389	- - - - - - - -	15159	18,176,283 – 18,176,389	-	10	120	65.56	-1.73	0.27	0.567189
11034	dm3.chr3R	18,184,258 – 18,184,357	- - CDS="CDS;ID=CDS_CG7073:4_90;Name=sar1-cds;Parent=FBtr0084206,FBtr0084207,FBtr0084208,FBtr0084209,FBtr0084210;parent_type=mRNA" - - - - -	15160	18,184,258 – 18,184,357	+	14	116	72.09	-0.82	0.63	0.907289
11035	dm3.chr3R	18,185,204 – 18,185,294	- - - - - - - -	15161	18,185,204 – 18,185,294	+	10	116	62.37	-1.11	0.51	0.966634
11036	dm3.chr3R	18,195,441 – 18,195,536	- - - intron="intron;ID=intron_CG7070:5_CG7070:2;Name=PyK-in;Parent=FBtr0084214;parent_type=mRNA" - - - -	15162	18,195,441 – 18,195,536	-	4	95	89.68	-1.85	0.85	0.825561
11037	dm3.chr3R	18,201,571 – 18,201,677	- - - - - - - -	15163	18,201,571 – 18,201,671	-	4	100	88.00	-2.74	0.68	0.924825
11037	dm3.chr3R	18,201,571 – 18,201,677	- - - - - - - -	15164	18,201,581 – 18,201,677	-	6	99	70.04	-0.99	0.49	0.563773
11038	dm3.chr3R	18,222,246 – 18,222,346	FBnoncoding="tRNA;ID=FBtr0084222;Name=tRNA:CR31165-RA;Parent=FBgn0051165;Alias=CR31165-RA;Dbxref=FlyBase_Annotation_IDs:CR31165-RA;score_text=Weakly" tRNAscann="Ser_chr3R_trna32" - - "Rfam_10.0=RF00005;tRNA;ABAV01026808.1/8968-9050\|2.8e-32" "Noncode_2.0=n202744_u198018_AK082357_mRNAlike\|1.8e-33" "unique_Noncode_2.0=u198018_mRNAlike\|1.6e-33" -	15165	18,222,246 – 18,222,346	+	13	102	83.31	-1.92	0.94	0.989470
11038	dm3.chr3R	18,222,246 – 18,222,346		15166	18,222,246 – 18,222,346	-	13	102	83.31	-1.74	0.99	0.986644
11039	dm3.chr3R	18,222,890 – 18,223,004	FBnoncoding="tRNA;ID=FBtr0084232;Name=tRNA:CR31167-RA;Parent=FBgn0051167;Alias=CR31167-RA;Dbxref=FlyBase_Annotation_IDs:CR31167-RA;score_text=Weakly" tRNAscann="Ser_chr3R_trna44" - - "Rfam_10.0=RF00005;tRNA;ABAV01026808.1/8968-9050\|1.3e-34" "Noncode_2.0=n202744_u198018_AK082357_mRNAlike\|8.5e-36" "unique_Noncode_2.0=u198018_mRNAlike\|7.4e-36" -	15167	18,222,890 – 18,223,004	+	13	140	82.04	-0.56	0.90	0.542249
11039	dm3.chr3R	18,222,890 – 18,223,004		15168	18,222,890 – 18,223,004	-	13	140	82.04	-0.76	0.89	0.672435
11040	dm3.chr3R	18,247,367 – 18,247,461	- - - intron="intron;ID=intron_CG13852:1_CG13852:2;Name=mats-in;Parent=FBtr0084229;parent_type=mRNA" - - - -	15169	18,247,367 – 18,247,461	+	8	113	62.58	-1.44	0.35	0.649293
11041	dm3.chr3R	18,253,293 – 18,253,404	- - CDS="CDS;ID=CDS_FBgn0038967:3_194;Name=CG13847-cds;Parent=FBtr0301711;parent_type=mRNA" - - - - -	15170	18,253,293 – 18,253,404	-	12	117	79.90	-1.86	0.55	0.834139
11042	dm3.chr3R	18,258,259 – 18,258,354	- - - intron="intron;ID=intron_FBgn0038967:4_FBgn0038967:3;Name=CG13847-in;Parent=FBtr0301711;parent_type=mRNA" - - - -	15171	18,258,259 – 18,258,354	+	11	100	78.16	-1.60	0.51	0.500000
11043	dm3.chr3R	18,272,765 – 18,272,877	- - CDS="CDS;ID=CDS_FBgn0085317:1_162;Name=CG34288-cds;Parent=FBtr0300623;parent_type=mRNA" - - - - -	15172	18,272,765 – 18,272,877	-	11	115	68.34	-1.39	0.33	0.544205
11044	dm3.chr3R	18,294,713 – 18,294,818	- - - intron="intron;ID=intron_FBgn0038975:1_FBgn0038975:2;Name=Nrx-1-in;Parent=FBtr0084256,FBtr0301485;parent_type=mRNA" - - - -	15173	18,294,713 – 18,294,818	+	9	119	73.01	-1.98	0.44	0.943232
11044	dm3.chr3R	18,294,713 – 18,294,818		15174	18,294,713 – 18,294,818	-	9	119	73.01	-1.76	0.45	0.901783
11045	dm3.chr3R	18,299,445 – 18,299,538	- - - intron="intron;ID=intron_FBgn0038975:8_FBgn0038975:10;Name=Nrx-1-in;Parent=FBtr0084256;parent_type=mRNA" - - - -	15175	18,299,445 – 18,299,538	+	13	99	94.53	-1.97	0.85	0.814515
11045	dm3.chr3R	18,299,445 – 18,299,538		15176	18,299,445 – 18,299,538	-	13	99	94.53	-1.93	0.79	0.563242
11046	dm3.chr3R	18,301,119 – 18,301,190	- - - intron="intron;ID=intron_FBgn0038975:9_FBgn0038975:10;Name=Nrx-1-in;Parent=FBtr0301485;parent_type=mRNA" - - - -	15177	18,301,119 – 18,301,190	+	8	76	72.09	-1.13	0.65	0.935001
11047	dm3.chr3R	18,305,281 – 18,305,401	- - CDS="CDS;ID=CDS_FBgn0038975:13_185;Name=Nrx-1-cds;Parent=FBtr0084256,FBtr0301485;parent_type=mRNA" - - - - -	15178	18,305,281 – 18,305,401	+	15	120	75.75	-1.91	0.41	0.889000
11048	dm3.chr3R	18,307,527 – 18,307,634	- - - intron="intron;ID=intron_FBgn0038975:14_FBgn0038975:15;Name=Nrx-1-in;Parent=FBtr0084256,FBtr0301485;parent_type=mRNA" - - - -	15179	18,307,527 – 18,307,634	+	11	119	89.41	-1.50	0.98	0.951210
11049	dm3.chr3R	18,318,372 – 18,318,477	- - - - - - - -	15180	18,318,372 – 18,318,477	+	6	110	67.10	-1.13	0.50	0.822567
11050	dm3.chr3R	18,321,997 – 18,322,084	- - - - - - - -	15181	18,321,997 – 18,322,084	+	5	96	73.22	-1.85	0.42	0.559643
11051	dm3.chr3R	18,322,510 – 18,322,566	- - - - - - - -	15182	18,322,510 – 18,322,566	+	4	56	71.17	-2.14	0.42	0.770026
11052	dm3.chr3R	18,326,834 – 18,326,961	- - - intron="intron;ID=intron_FBgn0038980:1_FBgn0038980:2;Name=oa2-in;Parent=FBtr0084260,FBtr0100322,FBtr0301484;parent_type=mRNA" - - - -	15183	18,326,834 – 18,326,961	-	7	136	71.55	-2.82	0.35	0.976144
11053	dm3.chr3R	18,326,993 – 18,327,095	- - - intron="intron;ID=intron_FBgn0038980:1_FBgn0038980:2;Name=oa2-in;Parent=FBtr0084260,FBtr0100322,FBtr0301484;parent_type=mRNA" - - - -	15184	18,326,993 – 18,327,095	+	9	111	72.47	-1.94	0.41	0.904673
11053	dm3.chr3R	18,326,993 – 18,327,095		15185	18,326,993 – 18,327,095	-	9	111	72.47	-1.90	0.34	0.638748
11054	dm3.chr3R	18,341,076 – 18,341,171	- - - - - - - -	15186	18,341,076 – 18,341,171	-	5	116	87.93	-1.66	0.87	0.839125
11055	dm3.chr3R	18,359,394 – 18,359,476	- - CDS="CDS;ID=CDS_FBgn0038983:4_172;Name=CG5326-cds;Parent=FBtr0084285;parent_type=mRNA" - - - - -	15187	18,359,394 – 18,359,476	+	12	82	84.92	-2.06	0.61	0.840740
11056	dm3.chr3R	18,376,901 – 18,377,007	- - - intron="intron;ID=intron_CG6921:1_CG6921:2;Name=bond-in;Parent=FBtr0084261;parent_type=mRNA" - - - -	15188	18,376,901 – 18,377,007	+	12	120	64.77	-1.54	0.36	0.896990
11057	dm3.chr3R	18,378,451 – 18,378,577	- - - intron="intron;ID=intron_CG6921:1_CG6921:2;Name=bond-in;Parent=FBtr0084261;parent_type=mRNA" - - - -	15189	18,378,451 – 18,378,577	+	5	135	90.61	-2.27	0.71	0.662429
11058	dm3.chr3R	18,379,858 – 18,379,923	- - - intron="intron;ID=intron_CG6921:5_CG6921:2;Name=bond-in;Parent=FBtr0084262;parent_type=mRNA" - - - -	15190	18,379,858 – 18,379,923	-	11	67	90.51	-2.25	0.63	0.520687
11059	dm3.chr3R	18,387,101 – 18,387,191	- - - intron="intron;ID=intron_CG5278:1_CG5278:2;Name=CG5278-in;Parent=FBtr0084281;parent_type=mRNA" - - - -	15191	18,387,101 – 18,387,191	-	10	91	62.39	-0.66	0.39	0.506752
11060	dm3.chr3R	18,388,447 – 18,388,537	- - - - - - - -	15192	18,388,447 – 18,388,537	+	3	90	99.26	-2.37	0.98	0.980773
11060	dm3.chr3R	18,388,447 – 18,388,537	- - - - - - - -	15193	18,388,447 – 18,388,537	-	3	90	99.26	-1.70	1.00	0.936387
11061	dm3.chr3R	18,390,135 – 18,390,231	- - - - - - - -	15194	18,390,135 – 18,390,231	-	10	109	74.73	-2.00	0.42	0.807576
11062	dm3.chr3R	18,401,065 – 18,401,170	- - - intron="intron;ID=intron_CG33110:5_CG33110:6;Name=CG33110-in;Parent=FBtr0084264;parent_type=mRNA" - - - -	15195	18,401,065 – 18,401,170	-	6	106	76.50	-2.29	0.66	0.989575
11063	dm3.chr3R	18,418,918 – 18,419,014	- - - intron="intron;ID=intron_FBgn0051158:1_FBgn0051158:2;Name=CG31158-in;Parent=FBtr0113395,FBtr0113396,FBtr0302187;parent_type=mRNA" - - - -	15196	18,418,918 – 18,419,014	+	11	108	79.76	-1.56	0.73	0.922610
11064	dm3.chr3R	18,419,366 – 18,419,485	- - - intron="intron;ID=intron_FBgn0051158:1_FBgn0051158:2;Name=CG31158-in;Parent=FBtr0113395,FBtr0113396,FBtr0302187;parent_type=mRNA" - - - -	15197	18,419,366 – 18,419,470	+	5	119	69.40	-1.18	0.52	0.510221
11064	dm3.chr3R	18,419,366 – 18,419,485		15198	18,419,385 – 18,419,485	-	4	107	73.09	-1.38	0.66	0.773928
11065	dm3.chr3R	18,419,956 – 18,420,016	- - - intron="intron;ID=intron_FBgn0051158:1_FBgn0051158:2;Name=CG31158-in;Parent=FBtr0113395,FBtr0113396,FBtr0302187;parent_type=mRNA" - - - -	15199	18,419,956 – 18,420,016	-	6	72	81.04	-1.91	0.61	0.685920
11066	dm3.chr3R	18,422,107 – 18,422,209	- - - intron="intron;ID=intron_FBgn0051158:1_FBgn0051158:2;Name=CG31158-in;Parent=FBtr0113395,FBtr0113396,FBtr0302187;parent_type=mRNA" - - - -	15200	18,422,107 – 18,422,209	+	6	108	78.97	-1.71	0.65	0.840604
11067	dm3.chr3R	18,425,627 – 18,425,743	- - CDS="CDS;ID=CDS_FBgn0051158:4_224;Name=CG31158-cds;Parent=FBtr0302187;parent_type=mRNA" - - - - -	15201	18,425,627 – 18,425,729	+	10	108	73.31	-1.70	0.40	0.659446
11067	dm3.chr3R	18,425,627 – 18,425,743		15202	18,425,642 – 18,425,743	+	9	112	67.38	-1.26	0.57	0.971445
11068	dm3.chr3R	18,425,867 – 18,425,960	- - CDS="CDS;ID=CDS_FBgn0051158:4_224;Name=CG31158-cds;Parent=FBtr0302187;parent_type=mRNA" - - - - -	15203	18,425,867 – 18,425,960	-	8	105	81.98	-2.66	0.60	0.976406
11069	dm3.chr3R	18,425,984 – 18,426,088	- - CDS="CDS;ID=CDS_FBgn0051158:4_224;Name=CG31158-cds;Parent=FBtr0302187;parent_type=mRNA" - - - - -	15204	18,425,984 – 18,426,088	-	10	114	73.14	-1.00	0.56	0.678396
11070	dm3.chr3R	18,430,505 – 18,430,596	- - - - - - - -	15205	18,430,505 – 18,430,596	+	12	101	73.33	-1.80	0.79	0.997256
11070	dm3.chr3R	18,430,505 – 18,430,596	- - - - - - - -	15206	18,430,505 – 18,430,596	-	12	101	73.33	-0.81	0.63	0.888320
11071	dm3.chr3R	18,460,878 – 18,460,971	- - - - - - - -	15207	18,460,878 – 18,460,971	-	6	111	65.22	-1.09	0.43	0.546905
11072	dm3.chr3R	18,465,012 – 18,465,126	- - - - - - - -	15208	18,465,012 – 18,465,126	+	10	135	56.63	-2.59	0.19	0.972091
11073	dm3.chr3R	18,483,223 – 18,483,316	- - - intron="intron;ID=intron_FBgn0261572:3_FBgn0261572:4;Name=CG42686-in;Parent=FBtr0302858;parent_type=mRNA" - - - -	15209	18,483,223 – 18,483,316	+	7	98	64.52	-2.48	0.39	0.997210
11074	dm3.chr3R	18,490,721 – 18,490,820	- - CDS="CDS;ID=CDS_FBgn0261572:6_213;Name=CG42686-cds;Parent=FBtr0302858;parent_type=mRNA" - - - - -	15210	18,490,721 – 18,490,820	+	12	111	74.96	-1.74	0.56	0.964520
11075	dm3.chr3R	18,496,674 – 18,496,730	- - - intron="intron;ID=intron_FBgn0039000:4_FBgn0039000:7;Name=CG6954-in;Parent=FBtr0306109,FBtr0306110;parent_type=mRNA" - - - -	15211	18,496,674 – 18,496,730	-	12	56	87.74	-0.99	0.90	0.667762
11076	dm3.chr3R	18,528,210 – 18,528,313	- - - intron="intron;ID=intron_CG6972:1_CG6972:2;Name=CG6972-in;Parent=FBtr0084305;parent_type=mRNA" - - - -	15212	18,528,210 – 18,528,313	+	5	104	91.20	-2.18	0.81	0.869421
11077	dm3.chr3R	18,555,810 – 18,555,879	- - - - - - - -	15213	18,555,810 – 18,555,879	-	12	73	87.42	-1.97	0.76	0.899513
11078	dm3.chr3R	18,576,499 – 18,576,629	- - - - - - - -	15214	18,576,499 – 18,576,615	+	6	116	76.32	-2.69	0.47	0.983147
				15215	18,576,499 – 18,576,615	-	6	116	76.32	-2.71	0.52	0.992153
				15216	18,576,516 – 18,576,629	-	6	117	75.63	-1.44	0.53	0.622570
11079	dm3.chr3R	18,595,200 – 18,595,291	- - CDS="CDS;ID=CDS_FBgn0262538:1_252;Name=CG43092-cds;Parent=FBtr0304880;parent_type=mRNA" - - - - -	15217	18,595,200 – 18,595,291	-	6	120	67.28	-1.33	0.59	0.978313
11080	dm3.chr3R	18,597,780 – 18,597,836	- - - - - - - -	15218	18,597,780 – 18,597,836	+	5	56	78.85	-1.42	0.67	0.624533
11081	dm3.chr3R	18,597,942 – 18,598,053	- - - - - - - -	15219	18,597,942 – 18,598,053	+	4	115	63.31	-1.85	0.33	0.659165
11082	dm3.chr3R	18,601,738 – 18,601,932	- - CDS="CDS;ID=CDS_FBgn0039025:3_94;Name=CG7023-cds;Parent=FBtr0084311;parent_type=mRNA" - - - - -	15220	18,601,738 – 18,601,842	+	15	120	77.85	-1.79	0.44	0.507541
11082	dm3.chr3R	18,601,738 – 18,601,932		15221	18,601,842 – 18,601,932	+	14	117	82.04	-1.76	0.64	0.665071
11083	dm3.chr3R	18,608,675 – 18,608,765	- - - - - - - -	15222	18,608,675 – 18,608,765	-	6	94	67.54	-0.81	0.48	0.526796
11084	dm3.chr3R	18,609,520 – 18,609,612	- - - - - - - -	15223	18,609,520 – 18,609,612	-	7	109	71.48	-1.37	0.62	0.945869
11085	dm3.chr3R	18,621,294 – 18,621,384	- - - - - - - -	15224	18,621,294 – 18,621,384	+	8	93	80.15	-1.09	0.70	0.572697
11085	dm3.chr3R	18,621,294 – 18,621,384	- - - - - - - -	15225	18,621,294 – 18,621,384	-	8	93	80.15	-1.32	0.64	0.597976
11086	dm3.chr3R	18,641,393 – 18,641,486	- - CDS="CDS;ID=CDS_FBgn0039028:1_189;Name=CG13840-cds;Parent=FBtr0301686;parent_type=mRNA" - - - - -	15226	18,641,393 – 18,641,486	+	6	108	79.91	-1.88	0.58	0.662978
11086	dm3.chr3R	18,641,393 – 18,641,486		15227	18,641,393 – 18,641,486	-	6	108	79.91	-2.47	0.64	0.972444
11087	dm3.chr3R	18,643,229 – 18,643,305	- - - - - - - -	15228	18,643,229 – 18,643,305	+	10	79	92.82	-2.31	0.76	0.821785
11088	dm3.chr3R	18,643,810 – 18,643,941	- - - - - - - -	15229	18,643,810 – 18,643,905	+	7	100	70.83	-0.79	0.61	0.746492
11088	dm3.chr3R	18,643,810 – 18,643,941	- - - - - - - -	15230	18,643,841 – 18,643,941	+	5	102	72.60	-1.37	0.52	0.623098
11089	dm3.chr3R	18,645,461 – 18,645,554	- - - - - - - -	15231	18,645,461 – 18,645,554	+	9	106	64.49	-1.26	0.38	0.679088
11090	dm3.chr3R	18,648,516 – 18,648,576	- - - - - - - -	15232	18,648,516 – 18,648,576	+	5	60	94.67	-1.76	0.88	0.744093
11090	dm3.chr3R	18,648,516 – 18,648,576	- - - - - - - -	15233	18,648,516 – 18,648,576	-	5	60	94.67	-1.70	0.92	0.842100
11091	dm3.chr3R	18,655,684 – 18,655,825	- - - - - - - -	15234	18,655,684 – 18,655,796	+	10	120	78.58	-0.91	0.73	0.634873
11091	dm3.chr3R	18,655,684 – 18,655,825	- - - - - - - -	15235	18,655,716 – 18,655,825	+	7	109	87.40	-1.87	0.71	0.711036
11092	dm3.chr3R	18,655,886 – 18,656,004	- - - - - - - -	15236	18,655,886 – 18,655,995	-	11	116	85.62	-1.88	0.70	0.835175
11092	dm3.chr3R	18,655,886 – 18,656,004	- - - - - - - -	15237	18,655,891 – 18,656,004	-	11	118	87.29	-1.72	0.76	0.784430
11093	dm3.chr3R	18,674,960 – 18,675,059	- - - - - - - -	15238	18,674,960 – 18,675,059	+	9	119	68.73	-1.41	0.64	0.980208
11094	dm3.chr3R	18,676,180 – 18,676,281	- - - - - - - -	15239	18,676,180 – 18,676,281	-	7	108	60.75	-1.69	0.38	0.974320
11095	dm3.chr3R	18,676,305 – 18,676,413	- - - - - - - -	15240	18,676,305 – 18,676,413	-	6	118	89.82	-2.26	0.77	0.884756
11096	dm3.chr3R	18,677,033 – 18,677,132	- - - - - - - -	15241	18,677,033 – 18,677,132	+	6	100	70.04	-2.09	0.60	0.994047
11097	dm3.chr3R	18,688,174 – 18,688,273	- - - - - - - -	15242	18,688,174 – 18,688,273	-	11	105	75.92	-1.83	0.37	0.598475
11098	dm3.chr3R	18,697,709 – 18,697,835	- - - - - - - -	15243	18,697,709 – 18,697,809	-	6	102	76.76	-2.66	0.47	0.965527
				15244	18,697,742 – 18,697,835	+	5	97	79.67	-2.37	0.63	0.961194
				15245	18,697,742 – 18,697,835	-	5	97	79.67	-1.66	0.68	0.791213
11099	dm3.chr3R	18,700,892 – 18,700,987	- - - - - - - -	15246	18,700,892 – 18,700,987	-	6	95	82.11	-1.46	0.75	0.792418
11100	dm3.chr3R	18,704,644 – 18,704,734	- - - - - - - -	15247	18,704,644 – 18,704,734	-	8	91	84.38	-2.02	0.57	0.686907
11101	dm3.chr3R	18,705,284 – 18,705,357	- - - - - - - -	15248	18,705,284 – 18,705,357	-	8	78	80.66	-1.59	0.62	0.696100
11102	dm3.chr3R	18,706,492 – 18,706,582	- - - - - - - -	15249	18,706,492 – 18,706,582	-	7	115	62.56	-1.72	0.46	0.979770
11103	dm3.chr3R	18,712,300 – 18,712,392	- - - - - - - -	15250	18,712,300 – 18,712,392	-	10	102	68.22	-1.19	0.52	0.940796
11104	dm3.chr3R	18,712,422 – 18,712,509	- - - - - - - -	15251	18,712,422 – 18,712,509	+	6	88	70.36	-2.27	0.48	0.990313
11105	dm3.chr3R	18,715,820 – 18,715,885	- - - - - - - -	15252	18,715,820 – 18,715,885	+	7	65	77.60	-1.55	0.57	0.737212
11105	dm3.chr3R	18,715,820 – 18,715,885	- - - - - - - -	15253	18,715,820 – 18,715,885	-	7	65	77.60	-1.78	0.64	0.939327
11106	dm3.chr3R	18,717,470 – 18,717,544	- - - - - - - -	15254	18,717,470 – 18,717,544	+	6	81	71.56	-2.41	0.72	0.998307
11106	dm3.chr3R	18,717,470 – 18,717,544	- - - - - - - -	15255	18,717,470 – 18,717,544	-	6	81	71.56	-1.00	0.66	0.835258
11107	dm3.chr3R	18,722,250 – 18,722,340	- - - - - - - -	15256	18,722,250 – 18,722,340	+	4	90	98.89	-0.75	1.01	0.537694
11107	dm3.chr3R	18,722,250 – 18,722,340	- - - - - - - -	15257	18,722,250 – 18,722,340	-	4	90	98.89	-1.11	0.96	0.500000
11108	dm3.chr3R	18,727,405 – 18,727,519	- - - intron="intron;ID=intron_CG6669:1_CG6669:2;Name=klg-in;Parent=FBtr0084337;parent_type=mRNA" - - - -	15258	18,727,405 – 18,727,519	-	5	115	92.72	-1.44	0.88	0.569515
11109	dm3.chr3R	18,737,053 – 18,737,158	- - - intron="intron;ID=intron_CG6669:1_CG6669:2;Name=klg-in;Parent=FBtr0084337;parent_type=mRNA" - - - -	15259	18,737,053 – 18,737,158	+	9	109	71.71	-1.54	0.48	0.941075
11110	dm3.chr3R	18,741,703 – 18,741,828	- - - intron="intron;ID=intron_CG6669:2_CG6669:3;Name=klg-in;Parent=FBtr0084337;parent_type=mRNA" - - - -	15260	18,741,703 – 18,741,803	+	6	105	88.46	-2.41	0.73	0.913756
				15261	18,741,703 – 18,741,803	-	6	105	88.46	-3.61	0.81	0.997827
				15262	18,741,735 – 18,741,828	+	6	106	76.22	-1.54	0.60	0.780814
11111	dm3.chr3R	18,745,430 – 18,745,523	- - - intron="intron;ID=intron_CG6669:2_CG6669:3;Name=klg-in;Parent=FBtr0084337;parent_type=mRNA" - - - -	15263	18,745,430 – 18,745,523	+	7	113	76.27	-1.77	0.47	0.548015
11112	dm3.chr3R	18,751,299 – 18,751,373	- - - - - - - -	15264	18,751,299 – 18,751,373	+	5	74	63.49	-1.22	0.41	0.679302
11113	dm3.chr3R	18,751,643 – 18,751,733	- - - - - - - -	15265	18,751,643 – 18,751,733	+	7	107	67.51	-1.26	0.45	0.801075
11113	dm3.chr3R	18,751,643 – 18,751,733	- - - - - - - -	15266	18,751,643 – 18,751,733	-	7	107	67.51	-0.96	0.60	0.933675
11114	dm3.chr3R	18,752,591 – 18,752,691	- - - - - - - -	15267	18,752,591 – 18,752,691	+	8	120	77.53	-1.89	0.53	0.837328
11115	dm3.chr3R	18,756,200 – 18,756,384	- - - - - - - -	15268	18,756,200 – 18,756,311	+	7	118	71.26	-1.98	0.54	0.985638
				15269	18,756,200 – 18,756,311	-	7	118	71.26	-1.43	0.52	0.876900
				15270	18,756,232 – 18,756,346	+	6	118	89.54	-2.75	0.78	0.977294
				15271	18,756,232 – 18,756,346	-	6	118	89.54	-2.59	0.82	0.977537
				15272	18,756,271 – 18,756,384	-	6	118	80.86	-2.11	0.66	0.940355
11116	dm3.chr3R	18,764,362 – 18,764,455	- - - - - - - -	15273	18,764,362 – 18,764,455	+	7	116	71.07	-0.63	0.66	0.635938
11117	dm3.chr3R	18,765,787 – 18,765,975	- - - - - - - -	15274	18,765,787 – 18,765,895	+	4	117	89.00	-2.33	0.75	0.855874
11117	dm3.chr3R	18,765,787 – 18,765,975	- - - - - - - -	15275	18,765,879 – 18,765,975	-	4	103	88.80	-1.82	0.82	0.752864
11118	dm3.chr3R	18,770,314 – 18,770,387	- - - - - - - -	15276	18,770,314 – 18,770,387	+	6	80	73.87	-1.79	0.51	0.894345
11118	dm3.chr3R	18,770,314 – 18,770,387	- - - - - - - -	15277	18,770,314 – 18,770,387	-	6	80	73.87	-2.12	0.62	0.990690
11119	dm3.chr3R	18,771,833 – 18,771,885	- - - - - - - -	15278	18,771,833 – 18,771,885	+	7	63	63.11	-0.63	0.48	0.602894
11119	dm3.chr3R	18,771,833 – 18,771,885	- - - - - - - -	15279	18,771,833 – 18,771,885	-	7	63	63.11	-1.44	0.32	0.523209
11120	dm3.chr3R	18,772,696 – 18,772,775	- - - - - - - -	15280	18,772,696 – 18,772,775	+	6	81	82.34	-1.26	0.76	0.619989
11121	dm3.chr3R	18,775,111 – 18,775,206	- - - intron="intron;ID=intron_CG6669:3_CG6669:4;Name=klg-in;Parent=FBtr0084337;parent_type=mRNA" - - - -	15281	18,775,111 – 18,775,206	-	6	103	81.31	-2.54	0.42	0.628467
11122	dm3.chr3R	18,777,591 – 18,777,727	- - - intron="intron;ID=intron_CG6669:3_CG6669:4;Name=klg-in;Parent=FBtr0084337;parent_type=mRNA" - - - -	15282	18,777,591 – 18,777,688	+	8	115	67.66	-1.57	0.36	0.657987
11122	dm3.chr3R	18,777,591 – 18,777,727		15283	18,777,618 – 18,777,727	+	7	113	74.61	-1.78	0.41	0.546021
11123	dm3.chr3R	18,781,309 – 18,781,425	- - - intron="intron;ID=intron_CG6669:5_CG6669:6;Name=klg-in;Parent=FBtr0084337;parent_type=mRNA" - - - -	15284	18,781,309 – 18,781,425	+	6	117	94.04	-1.75	0.83	0.581800
11123	dm3.chr3R	18,781,309 – 18,781,425		15285	18,781,309 – 18,781,425	-	6	117	94.04	-4.21	0.80	0.997922
11124	dm3.chr3R	18,782,507 – 18,782,600	- - - intron="intron;ID=intron_CG6669:7_CG6669:8;Name=klg-in;Parent=FBtr0084337;parent_type=mRNA" - - - -	15286	18,782,507 – 18,782,600	+	4	111	83.09	-1.89	0.79	0.866236
11125	dm3.chr3R	18,783,154 – 18,783,207	- - - intron="intron;ID=intron_CG6669:8_CG6669:9;Name=klg-in;Parent=FBtr0084337;parent_type=mRNA" - - - -	15287	18,783,154 – 18,783,207	-	6	58	73.90	-1.04	0.70	0.804451
11126	dm3.chr3R	18,803,415 – 18,803,515	- - CDS="CDS;ID=CDS_CG17244:1_38;Name=CG17244-cds;Parent=FBtr0084340;parent_type=mRNA" - - - - -	15288	18,803,415 – 18,803,511	+	10	102	80.40	-2.00	0.57	0.877159
				15289	18,803,415 – 18,803,511	-	10	102	80.40	-1.89	0.48	0.529280
				15290	18,803,419 – 18,803,515	+	10	104	79.19	-1.52	0.56	0.571392
11127	dm3.chr3R	18,805,785 – 18,805,887	- - - - - - - -	15291	18,805,785 – 18,805,887	+	11	108	88.21	-2.78	0.53	0.808159
11128	dm3.chr3R	18,816,546 – 18,816,643	- - - - - - - -	15292	18,816,546 – 18,816,643	+	7	98	59.40	-1.26	0.31	0.661405
11128	dm3.chr3R	18,816,546 – 18,816,643	- - - - - - - -	15293	18,816,546 – 18,816,643	-	7	98	59.40	-1.47	0.34	0.907879
11129	dm3.chr3R	18,830,511 – 18,830,580	- - - intron="intron;ID=intron_FBgn0085404:4_FBgn0085404:2;Name=CG34375-in;Parent=FBtr0302319;parent_type=mRNA" - - - -	15294	18,830,511 – 18,830,580	-	11	83	70.65	-2.10	0.29	0.719176
11130	dm3.chr3R	18,841,788 – 18,841,926	- - - - - - - -	15295	18,841,788 – 18,841,899	+	5	111	94.26	-2.33	0.90	0.961541
				15296	18,841,788 – 18,841,899	-	5	111	94.26	-1.82	0.88	0.798933
				15297	18,841,826 – 18,841,926	+	6	104	75.00	-1.56	0.87	0.982994
				15298	18,841,826 – 18,841,926	-	6	104	75.00	-2.21	0.75	0.995690
11131	dm3.chr3R	18,845,594 – 18,845,699	- - - - - - - -	15299	18,845,594 – 18,845,699	-	9	107	95.53	-1.99	0.83	0.719585
11132	dm3.chr3R	18,848,228 – 18,848,287	- - - intron="intron;ID=intron_FBgn0039039:2_FBgn0039039:1;Name=lmd-in;Parent=FBtr0084364;parent_type=mRNA" - - - -	15300	18,848,228 – 18,848,287	+	6	66	76.19	-1.67	0.72	0.953134
11132	dm3.chr3R	18,848,228 – 18,848,287		15301	18,848,228 – 18,848,287	-	6	66	76.19	-1.32	0.60	0.597295
11133	dm3.chr3R	18,848,992 – 18,849,103	- - - intron="intron;ID=intron_FBgn0039039:2_FBgn0039039:1;Name=lmd-in;Parent=FBtr0084364;parent_type=mRNA" - - - -	15302	18,848,992 – 18,849,103	+	3	112	82.39	-3.40	0.82	0.997690
11134	dm3.chr3R	18,853,175 – 18,853,304	- - - - - - - -	15303	18,853,175 – 18,853,304	+	7	131	74.81	-2.24	0.56	0.985588
11135	dm3.chr3R	18,863,010 – 18,863,114	- - - - - - - -	15304	18,863,010 – 18,863,114	+	5	104	89.80	-1.81	0.76	0.516318
11136	dm3.chr3R	18,873,319 – 18,873,430	- - - intron="intron;ID=intron_FBgn0039043:7_FBgn0039043:6;Name=CG17121-in;Parent=FBtr0084361;parent_type=mRNA" - - - -	15305	18,873,319 – 18,873,429	-	4	114	64.88	-1.09	0.49	0.631927
11136	dm3.chr3R	18,873,319 – 18,873,430		15306	18,873,320 – 18,873,430	-	4	114	64.58	-1.23	0.48	0.737482
11137	dm3.chr3R	18,898,896 – 18,898,986	- - - intron="intron;ID=intron_FBgn0039054:3_FBgn0039054:2;Name=CG13830-in;Parent=FBtr0302022;parent_type=mRNA" - - - -	15307	18,898,896 – 18,898,986	+	5	90	87.16	-1.81	0.75	0.687196
11138	dm3.chr3R	18,899,488 – 18,899,547	- - - intron="intron;ID=intron_FBgn0039054:3_FBgn0039054:2;Name=CG13830-in;Parent=FBtr0302022;parent_type=mRNA" - - - -	15308	18,899,488 – 18,899,547	+	4	59	88.79	-1.85	0.75	0.500000
11139	dm3.chr3R	18,910,048 – 18,910,138	- - - intron="intron;ID=intron_FBgn0039054:12_FBgn0039054:11;Name=CG13830-in;Parent=FBtr0302022,FBtr0302023;parent_type=mRNA" - - - -	15309	18,910,048 – 18,910,138	-	12	119	75.98	-2.00	0.57	0.950791
11140	dm3.chr3R	18,929,084 – 18,929,185	- - - - - - - -	15310	18,929,084 – 18,929,185	+	5	118	68.99	-1.29	0.49	0.698232
11141	dm3.chr3R	18,932,473 – 18,932,582	- - - - - - - -	15311	18,932,473 – 18,932,582	+	3	109	92.33	-0.91	0.96	0.521670
11142	dm3.chr3R	18,938,306 – 18,938,405	- - - - - - - -	15312	18,938,306 – 18,938,405	-	3	99	79.93	-0.81	0.89	0.525400
11143	dm3.chr3R	18,979,582 – 18,979,674	- - - - - - - -	15313	18,979,582 – 18,979,674	+	10	119	58.41	-0.98	0.35	0.535710
11144	dm3.chr3R	18,980,809 – 18,980,950	- - CDS="CDS;ID=CDS_FBgn0004395:7_259;Name=unk-cds;Parent=FBtr0305572;parent_type=mRNA" - - - - -	15314	18,980,809 – 18,980,950	-	11	149	75.70	-0.96	0.58	0.537742
11145	dm3.chr3R	18,988,191 – 18,988,280	- - - - - - - -	15315	18,988,191 – 18,988,280	+	8	98	66.67	-1.52	0.35	0.629889
11146	dm3.chr3R	18,992,966 – 18,993,060	- - - - - - - -	15316	18,992,966 – 18,993,060	-	6	105	66.30	-1.53	0.38	0.715302
11147	dm3.chr3R	18,997,388 – 18,997,481	- - - - - - - -	15317	18,997,388 – 18,997,481	+	7	114	68.23	-2.09	0.65	0.997719
11147	dm3.chr3R	18,997,388 – 18,997,481	- - - - - - - -	15318	18,997,388 – 18,997,481	-	7	114	68.23	-1.33	0.59	0.955523
11148	dm3.chr3R	19,010,539 – 19,010,656	- - CDS="CDS;ID=CDS_FBgn0039061:7_179;Name=Ir-cds;Parent=FBtr0301382;parent_type=mRNA" - - - - -	15319	19,010,539 – 19,010,656	+	5	117	76.49	-2.03	0.49	0.645013
11149	dm3.chr3R	19,020,283 – 19,020,387	- - - intron="intron;ID=intron_CG17894:7_CG17894:8;Name=cnc-in;Parent=FBtr0084392,FBtr0084393;parent_type=mRNA" - - - -	15320	19,020,283 – 19,020,387	+	6	114	85.29	-1.33	0.78	0.507905
11149	dm3.chr3R	19,020,283 – 19,020,387		15321	19,020,283 – 19,020,387	-	6	114	85.29	-2.74	0.78	0.989622
11150	dm3.chr3R	19,026,186 – 19,026,279	- - - - - - - -	15322	19,026,186 – 19,026,279	-	7	98	75.98	-2.04	0.51	0.847596
11151	dm3.chr3R	19,036,683 – 19,036,773	- - - intron="intron;ID=intron_CG17894:3_CG17894:4;Name=cnc-in;Parent=FBtr0084392;parent_type=mRNA" - - - -	15323	19,036,683 – 19,036,773	-	7	100	68.82	-1.74	0.34	0.520030
11152	dm3.chr3R	19,071,994 – 19,072,088	- - - intron="intron;ID=intron_FBgn0039064:15_FBgn0039064:14;Name=CG4467-in;Parent=FBtr0110801;parent_type=mRNA" - - - -	15324	19,071,994 – 19,072,088	-	10	108	69.07	-1.78	0.40	0.939862
11153	dm3.chr3R	19,073,195 – 19,073,295	- - - intron="intron;ID=intron_FBgn0039064:15_FBgn0039064:14;Name=CG4467-in;Parent=FBtr0110801;parent_type=mRNA" - - - -	15325	19,073,195 – 19,073,295	+	11	113	75.20	-1.34	0.50	0.672225
11154	dm3.chr3R	19,080,227 – 19,080,393	- - - - - - - -	15326	19,080,227 – 19,080,393	+	6	168	70.80	-1.85	0.46	0.939686
11155	dm3.chr3R	19,088,828 – 19,088,925	- - - - - - - -	15327	19,088,828 – 19,088,925	-	5	98	95.17	-3.79	0.85	0.996353
11156	dm3.chr3R	19,096,845 – 19,096,959	- - - intron="intron;ID=intron_FBgn0004882:15_FBgn0004882:14;Name=orb-in;Parent=FBtr0084384;parent_type=mRNA" - - - -	15328	19,096,845 – 19,096,959	-	12	120	95.54	-2.22	0.77	0.632825
11157	dm3.chr3R	19,097,835 – 19,097,932	- - - intron="intron;ID=intron_FBgn0004882:15_FBgn0004882:14;Name=orb-in;Parent=FBtr0084384;parent_type=mRNA" - - - -	15329	19,097,835 – 19,097,932	+	9	110	84.40	-1.75	0.83	0.935841
11158	dm3.chr3R	19,098,885 – 19,098,980	- - - intron="intron;ID=intron_FBgn0004882:15_FBgn0004882:14;Name=orb-in;Parent=FBtr0084384;parent_type=mRNA" - - - -	15330	19,098,885 – 19,098,980	-	7	106	60.59	-1.44	0.35	0.905617
11159	dm3.chr3R	19,100,546 – 19,100,648	- - - intron="intron;ID=intron_FBgn0004882:15_FBgn0004882:14;Name=orb-in;Parent=FBtr0084384;parent_type=mRNA" - - - -	15331	19,100,546 – 19,100,648	+	6	111	92.44	-1.43	0.89	0.653967
11160	dm3.chr3R	19,106,519 – 19,106,592	- - - - - - - -	15332	19,106,519 – 19,106,592	+	6	78	76.88	-2.92	0.37	0.930355
11161	dm3.chr3R	19,137,229 – 19,137,320	- - - - - - - -	15333	19,137,229 – 19,137,320	+	6	94	73.67	-1.49	0.48	0.647389
11162	dm3.chr3R	19,138,433 – 19,138,504	- - - intron="intron;ID=intron_CG17077:5_CG17077:6;Name=pnt-in;Parent=FBtr0089717,FBtr0089716;parent_type=mRNA" - - - -	15334	19,138,433 – 19,138,504	-	7	77	73.60	-1.59	0.47	0.500000
11163	dm3.chr3R	19,148,103 – 19,148,205	- - - - - - - -	15335	19,148,103 – 19,148,205	+	10	104	65.35	-1.25	0.35	0.500000
11163	dm3.chr3R	19,148,103 – 19,148,205	- - - - - - - -	15336	19,148,103 – 19,148,205	-	10	104	65.35	-1.25	0.40	0.759763
11164	dm3.chr3R	19,164,663 – 19,164,765	- - - intron="intron;ID=intron_CG17077:2_CG17077:3;Name=pnt-in;Parent=FBtr0089717;parent_type=mRNA" - - - -	15337	19,164,663 – 19,164,765	-	6	103	73.16	-0.95	0.62	0.684595
11165	dm3.chr3R	19,166,951 – 19,167,043	- - - intron="intron;ID=intron_CG17077:1_CG17077:2;Name=pnt-in;Parent=FBtr0089717;parent_type=mRNA" - - - -	15338	19,166,951 – 19,167,043	+	3	92	90.22	-1.73	0.89	0.835087
11166	dm3.chr3R	19,170,741 – 19,170,840	- - - intron="intron;ID=intron_CG17077:1_CG17077:2;Name=pnt-in;Parent=FBtr0089717;parent_type=mRNA" - - - -	15339	19,170,741 – 19,170,840	+	5	99	99.60	-0.89	1.00	0.563427
11166	dm3.chr3R	19,170,741 – 19,170,840		15340	19,170,741 – 19,170,840	-	5	99	99.60	-1.46	0.98	0.820283
11167	dm3.chr3R	19,193,810 – 19,193,912	- - - - - - - -	15341	19,193,810 – 19,193,912	+	11	107	79.99	-1.82	0.55	0.818327
11168	dm3.chr3R	19,202,108 – 19,202,201	- - - - - - - -	15342	19,202,108 – 19,202,201	+	7	104	60.85	-0.94	0.52	0.913581
11169	dm3.chr3R	19,203,957 – 19,204,061	- - - - - - - -	15343	19,203,957 – 19,204,061	+	12	116	69.17	-1.41	0.49	0.934159
11169	dm3.chr3R	19,203,957 – 19,204,061	- - - - - - - -	15344	19,203,957 – 19,204,061	-	12	116	69.17	-1.01	0.44	0.533167
11170	dm3.chr3R	19,212,023 – 19,212,131	- - - - - - - -	15345	19,212,023 – 19,212,131	-	8	119	56.05	-2.12	0.14	0.500000
11171	dm3.chr3R	19,218,032 – 19,218,088	- - - - - - - -	15346	19,218,032 – 19,218,088	+	7	61	71.53	-0.78	0.64	0.824154
11172	dm3.chr3R	19,219,224 – 19,219,342	- - - - - - - -	15347	19,219,224 – 19,219,342	-	10	134	71.76	-1.42	0.41	0.614050
11173	dm3.chr3R	19,221,648 – 19,221,747	- - - - - - - -	15348	19,221,648 – 19,221,747	+	4	99	51.79	-0.67	0.41	0.616995
11174	dm3.chr3R	19,223,204 – 19,223,324	- - - - - - - -	15349	19,223,204 – 19,223,324	+	12	120	96.97	-1.79	0.84	0.500000
11175	dm3.chr3R	19,225,684 – 19,225,784	- - - - - - - -	15350	19,225,684 – 19,225,784	+	7	116	86.29	-3.56	0.69	0.996026
11176	dm3.chr3R	19,226,825 – 19,226,883	- - - - - - - -	15351	19,226,825 – 19,226,883	+	5	60	65.14	-2.40	0.53	0.998743
11177	dm3.chr3R	19,227,492 – 19,227,605	- - - - - - - -	15352	19,227,492 – 19,227,605	-	6	117	70.50	-0.91	0.62	0.694859
11178	dm3.chr3R	19,237,587 – 19,237,742	- - CDS="CDS;ID=CDS_FBgn0039078:1_229;Name=CG4374-cds;Parent=FBtr0303342;parent_type=mRNA" - - - - -	15353	19,237,587 – 19,237,686	-	12	111	67.31	-1.51	0.56	0.995979
				15354	19,237,616 – 19,237,716	-	13	115	69.58	-1.69	0.30	0.500000
				15355	19,237,647 – 19,237,742	-	13	96	83.63	-2.20	0.58	0.907430
11179	dm3.chr3R	19,253,001 – 19,253,117	- - - intron="intron;ID=intron_FBgn0039078:3_FBgn0039078:2;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15356	19,253,001 – 19,253,117	-	6	116	77.98	-2.27	0.42	0.720320
11180	dm3.chr3R	19,259,740 – 19,259,872	- - - intron="intron;ID=intron_FBgn0039078:3_FBgn0039078:2;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15357	19,259,740 – 19,259,815	+	5	77	95.31	-0.82	1.01	0.688604
11180	dm3.chr3R	19,259,740 – 19,259,872		15358	19,259,815 – 19,259,872	-	6	57	78.36	-1.54	0.61	0.762477
11181	dm3.chr3R	19,265,319 – 19,265,423	- - - intron="intron;ID=intron_FBgn0039078:3_FBgn0039078:2;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15359	19,265,319 – 19,265,423	-	4	104	94.71	-1.58	0.88	0.595669
11182	dm3.chr3R	19,265,583 – 19,265,684	- - - intron="intron;ID=intron_FBgn0039078:3_FBgn0039078:2;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15360	19,265,583 – 19,265,684	-	11	116	69.27	-2.39	0.23	0.647971
11183	dm3.chr3R	19,269,182 – 19,269,272	- - - intron="intron;ID=intron_FBgn0039078:3_FBgn0039078:2;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15361	19,269,182 – 19,269,272	-	5	99	93.80	-1.48	0.88	0.562513
11184	dm3.chr3R	19,271,452 – 19,271,519	- - - intron="intron;ID=intron_FBgn0039078:3_FBgn0039078:2;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15362	19,271,452 – 19,271,519	+	4	69	57.53	-2.14	0.45	0.995691
11185	dm3.chr3R	19,274,224 – 19,274,336	- - - intron="intron;ID=intron_FBgn0039078:3_FBgn0039078:2;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15363	19,274,224 – 19,274,336	+	5	118	89.99	-2.33	0.80	0.925837
11186	dm3.chr3R	19,277,965 – 19,278,071	- - - intron="intron;ID=intron_FBgn0039078:3_FBgn0039078:2;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15364	19,277,965 – 19,278,071	+	8	113	80.22	-2.44	0.58	0.966742
11186	dm3.chr3R	19,277,965 – 19,278,071		15365	19,277,965 – 19,278,071	-	8	113	80.22	-3.48	0.37	0.976989
11187	dm3.chr3R	19,282,890 – 19,283,029	- - - intron="intron;ID=intron_FBgn0039078:4_FBgn0039078:3;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15366	19,282,890 – 19,282,991	-	10	118	70.32	-2.83	0.29	0.945829
11187	dm3.chr3R	19,282,890 – 19,283,029		15367	19,282,924 – 19,283,029	-	11	118	78.65	-1.65	0.50	0.505862
11188	dm3.chr3R	19,283,241 – 19,283,399	- - - intron="intron;ID=intron_FBgn0039078:4_FBgn0039078:3;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15368	19,283,241 – 19,283,338	+	9	110	76.95	-1.49	0.61	0.854540
				15369	19,283,271 – 19,283,363	+	10	111	74.81	-2.46	0.44	0.956042
				15370	19,283,271 – 19,283,363	-	10	111	74.81	-2.15	0.43	0.857429
				15371	19,283,300 – 19,283,399	+	10	114	81.00	-1.76	0.55	0.552382
11189	dm3.chr3R	19,284,755 – 19,284,862	- - - intron="intron;ID=intron_FBgn0039078:4_FBgn0039078:3;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15372	19,284,755 – 19,284,862	+	8	130	60.59	-1.01	0.43	0.775121
11189	dm3.chr3R	19,284,755 – 19,284,862		15373	19,284,755 – 19,284,862	-	8	130	60.59	-0.39	0.55	0.734371
11190	dm3.chr3R	19,286,300 – 19,286,392	- - - intron="intron;ID=intron_FBgn0039078:4_FBgn0039078:3;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15374	19,286,300 – 19,286,392	-	7	106	62.75	-2.05	0.31	0.905467
11191	dm3.chr3R	19,287,668 – 19,287,808	- - - intron="intron;ID=intron_FBgn0039078:4_FBgn0039078:3;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15375	19,287,668 – 19,287,770	-	9	112	78.01	-1.55	0.61	0.760197
11191	dm3.chr3R	19,287,668 – 19,287,808		15376	19,287,691 – 19,287,808	-	12	120	90.48	-1.90	0.79	0.775148
11192	dm3.chr3R	19,295,573 – 19,295,673	- - - intron="intron;ID=intron_FBgn0039078:4_FBgn0039078:3;Name=CG4374-in;Parent=FBtr0303342;parent_type=mRNA" - - - -	15377	19,295,573 – 19,295,673	+	11	111	75.90	-1.49	0.61	0.855347
11193	dm3.chr3R	19,300,388 – 19,300,484	- - - - - - - -	15378	19,300,388 – 19,300,484	-	9	111	76.94	-2.12	0.46	0.850194
11194	dm3.chr3R	19,303,585 – 19,303,735	- - - - - - - -	15379	19,303,585 – 19,303,735	-	5	150	94.38	-2.50	0.76	0.809247
11195	dm3.chr3R	19,306,736 – 19,306,827	- - - - - - - -	15380	19,306,736 – 19,306,827	-	5	97	92.24	-1.69	0.88	0.774089
11196	dm3.chr3R	19,317,681 – 19,317,776	- - - - - - - -	15381	19,317,681 – 19,317,776	+	10	119	67.89	-0.61	0.61	0.641954
11197	dm3.chr3R	19,320,849 – 19,320,953	- - - - - - - -	15382	19,320,849 – 19,320,941	+	11	113	88.25	-3.24	0.81	0.996455
				15383	19,320,849 – 19,320,941	-	11	113	88.25	-3.45	0.92	0.998484
				15384	19,320,861 – 19,320,953	+	12	120	92.26	-3.86	0.80	0.997411
				15385	19,320,861 – 19,320,953	-	12	120	92.26	-3.75	0.90	0.998307
11198	dm3.chr3R	19,322,135 – 19,322,245	- - - - - - - -	15386	19,322,135 – 19,322,237	+	4	102	84.97	-3.97	0.84	0.999004
				15387	19,322,135 – 19,322,237	-	4	102	84.97	-1.70	0.78	0.737565
				15388	19,322,143 – 19,322,245	+	7	103	72.78	-3.53	0.55	0.999719
				15389	19,322,143 – 19,322,245	-	7	103	72.78	-2.18	0.60	0.994250
11199	dm3.chr3R	19,330,379 – 19,330,517	- - - - - - - -	15390	19,330,379 – 19,330,488	+	8	120	77.68	-2.24	0.38	0.514391
				15391	19,330,379 – 19,330,488	-	8	120	77.68	-3.20	0.55	0.997405
				15392	19,330,412 – 19,330,514	-	8	120	80.32	-2.84	0.80	0.996946
				15393	19,330,415 – 19,330,517	-	8	119	81.88	-2.19	0.80	0.980990
11200	dm3.chr3R	19,335,439 – 19,335,545	- - - - - - - -	15394	19,335,439 – 19,335,545	-	12	117	71.74	-1.14	0.48	0.723485
11201	dm3.chr3R	19,344,577 – 19,344,678	- - - intron="intron;ID=intron_FBgn0039081:7_FBgn0039081:6;Name=Irk2-in;Parent=FBtr0084425;parent_type=mRNA" - - - -	15395	19,344,577 – 19,344,678	-	6	116	74.09	-2.21	0.56	0.974791
11202	dm3.chr3R	19,370,690 – 19,370,782	- - - - - - - -	15396	19,370,690 – 19,370,782	+	6	97	80.85	-1.44	0.66	0.547360
11203	dm3.chr3R	19,377,265 – 19,377,370	- - - - - - - -	15397	19,377,265 – 19,377,370	-	3	110	90.30	-2.41	0.92	0.981940
11204	dm3.chr3R	19,377,560 – 19,377,659	- - - - - - - -	15398	19,377,560 – 19,377,659	-	11	108	83.84	-2.18	0.54	0.700364
11205	dm3.chr3R	19,388,226 – 19,388,336	- - - intron="intron;ID=intron_FBgn0039089:1_FBgn0039089:2;Name=beat-IV-in;Parent=FBtr0084433;parent_type=mRNA" - - - -	15399	19,388,226 – 19,388,336	-	4	110	87.27	-2.51	0.82	0.975437
11206	dm3.chr3R	19,403,412 – 19,403,557	- - - intron="intron;ID=intron_FBgn0039089:5_FBgn0039089:6;Name=beat-IV-in;Parent=FBtr0084433;parent_type=mRNA" - - - -	15400	19,403,412 – 19,403,522	+	7	111	68.76	-1.29	0.42	0.714856
11206	dm3.chr3R	19,403,412 – 19,403,557		15401	19,403,451 – 19,403,557	+	7	108	75.62	-0.95	0.69	0.763511
11207	dm3.chr3R	19,404,377 – 19,404,483	- - CDS="CDS;ID=CDS_FBgn0039089:6_112;Name=beat-IV-cds;Parent=FBtr0084433;parent_type=mRNA" - - - - -	15402	19,404,377 – 19,404,483	-	14	119	78.00	-1.71	0.44	0.579182
11208	dm3.chr3R	19,408,048 – 19,408,147	- - - - - - - -	15403	19,408,048 – 19,408,147	+	4	99	88.89	-1.42	0.92	0.825221
11208	dm3.chr3R	19,408,048 – 19,408,147	- - - - - - - -	15404	19,408,048 – 19,408,147	-	4	99	88.89	-1.49	0.93	0.875083
11209	dm3.chr3R	19,411,316 – 19,411,407	- - - - - - - -	15405	19,411,316 – 19,411,407	-	11	112	68.36	-1.23	0.47	0.846014
11210	dm3.chr3R	19,441,615 – 19,441,708	- - - intron="intron;ID=intron_FBgn0051145:10_FBgn0051145:9;Name=CG31145-in;Parent=FBtr0084479,FBtr0084480,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15406	19,441,615 – 19,441,708	+	10	103	78.75	-1.84	0.48	0.711420
11211	dm3.chr3R	19,444,312 – 19,444,455	- - - intron="intron;ID=intron_FBgn0051145:11_FBgn0051145:10;Name=CG31145-in;Parent=FBtr0084479,FBtr0084480,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15407	19,444,312 – 19,444,402	+	7	106	72.89	-1.18	0.50	0.555538
11211	dm3.chr3R	19,444,312 – 19,444,455		15408	19,444,364 – 19,444,455	-	5	91	91.21	-2.25	0.77	0.830606
11212	dm3.chr3R	19,447,507 – 19,447,563	- - - intron="intron;ID=intron_FBgn0051145:11_FBgn0051145:10;Name=CG31145-in;Parent=FBtr0084479,FBtr0084480,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15409	19,447,507 – 19,447,563	-	5	57	58.41	-1.18	0.60	0.990559
11213	dm3.chr3R	19,448,509 – 19,448,573	- - - intron="intron;ID=intron_FBgn0051145:12_FBgn0051145:11;Name=CG31145-in;Parent=FBtr0084479,FBtr0084480,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15410	19,448,509 – 19,448,573	-	9	68	80.37	-2.12	0.57	0.918196
11214	dm3.chr3R	19,450,553 – 19,450,613	- - - intron="intron;ID=intron_FBgn0051145:12_FBgn0051145:11;Name=CG31145-in;Parent=FBtr0084479,FBtr0084480,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15411	19,450,553 – 19,450,613	-	6	60	77.78	-1.05	0.77	0.794574
11215	dm3.chr3R	19,451,331 – 19,451,431	- - - intron="intron;ID=intron_FBgn0051145:12_FBgn0051145:11;Name=CG31145-in;Parent=FBtr0084479,FBtr0084480,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15412	19,451,331 – 19,451,431	-	11	113	76.78	-2.35	0.51	0.977429
11216	dm3.chr3R	19,459,254 – 19,459,339	- - - intron="intron;ID=intron_FBgn0051145:15_FBgn0051145:14;Name=CG31145-in;Parent=FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15413	19,459,254 – 19,459,339	-	6	91	78.47	-1.76	0.66	0.902484
11217	dm3.chr3R	19,460,103 – 19,460,166	- - - intron="intron;ID=intron_FBgn0051145:15_FBgn0051145:14;Name=CG31145-in;Parent=FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15414	19,460,103 – 19,460,166	-	6	75	65.99	-1.14	0.47	0.710714
11218	dm3.chr3R	19,463,388 – 19,463,478	- - - intron="intron;ID=intron_FBgn0051145:16_FBgn0051145:15;Name=CG31145-in;Parent=FBtr0084479,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15415	19,463,388 – 19,463,478	-	5	90	81.34	-2.88	0.63	0.984594
11219	dm3.chr3R	19,470,218 – 19,470,333	- - - intron="intron;ID=intron_FBgn0051145:16_FBgn0051145:15;Name=CG31145-in;Parent=FBtr0084479,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15416	19,470,218 – 19,470,333	+	5	115	67.11	-0.40	0.61	0.517542
11220	dm3.chr3R	19,484,827 – 19,484,927	- - - intron="intron;ID=intron_FBgn0051145:17_FBgn0051145:16;Name=CG31145-in;Parent=FBtr0084480,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15417	19,484,827 – 19,484,927	+	8	119	76.89	-2.23	0.47	0.828997
11221	dm3.chr3R	19,486,415 – 19,486,520	- - - intron="intron;ID=intron_FBgn0051145:18_FBgn0051145:17;Name=CG31145-in;Parent=FBtr0084480,FBtr0290056,FBtr0290057;parent_type=mRNA" - - - -	15418	19,486,415 – 19,486,520	-	6	120	71.11	-0.99	0.54	0.574112
11222	dm3.chr3R	19,496,847 – 19,496,937	- - - - - - - -	15419	19,496,847 – 19,496,937	+	8	97	75.56	-1.73	0.46	0.597742
11223	dm3.chr3R	19,534,210 – 19,534,311	- - - - - - - -	15420	19,534,210 – 19,534,304	+	12	104	74.84	-1.99	0.57	0.982188
11223	dm3.chr3R	19,534,210 – 19,534,311	- - - - - - - -	15421	19,534,217 – 19,534,311	+	12	105	75.34	-1.56	0.55	0.919069
11224	dm3.chr3R	19,536,088 – 19,536,196	- - CDS="CDS;ID=CDS_FBgn0039106:1_132;Name=CG10301-cds;Parent=FBtr0114504;parent_type=mRNA" - - - - -	15422	19,536,088 – 19,536,196	-	12	113	71.77	-1.37	0.42	0.702582
11225	dm3.chr3R	19,536,610 – 19,536,712	- - - intron="intron;ID=intron_FBgn0039106:2_FBgn0039106:3;Name=CG10301-in;Parent=FBtr0114504;parent_type=mRNA" - - - -	15423	19,536,610 – 19,536,712	+	4	102	76.67	-1.70	0.59	0.594695
11225	dm3.chr3R	19,536,610 – 19,536,712		15424	19,536,610 – 19,536,712	-	4	102	76.67	-2.85	0.48	0.952996
11226	dm3.chr3R	19,555,902 – 19,555,996	FBnoncoding="ncRNA;ID=FBtr0091662;Name=RNaseMRP:RNA-RA;Parent=FBgn0065098;Alias=snmRNA:342-RB,snmRNA:342-RA;Dbxref=FlyBase_Annotation_IDs:CR33682-RA,REFSEQ:NR_002501;score_text=Weakly" - - intron="intron;ID=intron_CG10365:3_CG10365:4;Name=CG10365-in;Parent=FBtr0084446,FBtr0084447,FBtr0084448,FBtr0084449;parent_type=mRNA" "Rfam_10.0=RF00030;RNase_MRP;AC008223.4/123485-123839\|3.1e-47" "Noncode_2.0=n3553_u3180_AJ544051_snmRNA_Drosophila\|3.1e-47" "unique_Noncode_2.0=u3180_snmRNA_Drosophila\|2.7e-47" -	15425	19,555,902 – 19,555,996	-	12	116	71.13	-3.22	0.63	0.999776
11227	dm3.chr3R	19,578,244 – 19,578,344	- - - - - - - -	15426	19,578,244 – 19,578,344	-	11	116	68.55	-1.14	0.42	0.584652
11228	dm3.chr3R	19,612,544 – 19,612,637	- - - intron="intron;ID=intron_FBgn0015513:1_FBgn0015513:2;Name=mbc-in;Parent=FBtr0084459,FBtr0304729;parent_type=mRNA" - - - -	15427	19,612,544 – 19,612,637	-	5	101	64.18	-2.07	0.28	0.523111
11229	dm3.chr3R	19,615,323 – 19,615,405	- - - intron="intron;ID=intron_FBgn0015513:1_FBgn0015513:2;Name=mbc-in;Parent=FBtr0084459,FBtr0304729;parent_type=mRNA" - - - -	15428	19,615,323 – 19,615,405	-	4	82	72.97	-1.62	0.53	0.677858
11230	dm3.chr3R	19,632,617 – 19,632,722	- - CDS="CDS;ID=CDS_CG33111:6_91;Name=CG33111-cds;Parent=FBtr0084530,FBtr0084529;parent_type=mRNA" - - - - -	15429	19,632,617 – 19,632,722	+	12	105	77.87	-2.00	0.47	0.896905
11231	dm3.chr3R	19,646,539 – 19,646,637	- - - - - - - -	15430	19,646,539 – 19,646,637	+	9	118	66.76	-1.08	0.50	0.836483
11232	dm3.chr3R	19,652,727 – 19,652,826	- - - intron="intron;ID=intron_FBgn0085384:1_FBgn0085384:2;Name=CG34355-in;Parent=FBtr0273215,FBtr0273216;parent_type=mRNA" - - - -	15431	19,652,727 – 19,652,826	+	12	116	89.92	-1.14	0.94	0.766644
11233	dm3.chr3R	19,653,249 – 19,653,364	- - - intron="intron;ID=intron_FBgn0085384:1_FBgn0085384:2;Name=CG34355-in;Parent=FBtr0273215,FBtr0273216;parent_type=mRNA" - - - -	15432	19,653,249 – 19,653,364	+	12	120	92.63	-2.28	0.88	0.964793
11234	dm3.chr3R	19,672,904 – 19,673,016	- - CDS="CDS;ID=CDS_FBgn0085384:7_170;Name=CG34355-cds;Parent=FBtr0273215;parent_type=mRNA" - - - - -	15433	19,672,904 – 19,673,016	+	13	115	72.29	-0.70	0.52	0.647284
11235	dm3.chr3R	19,675,699 – 19,675,794	- - - - - - - -	15434	19,675,699 – 19,675,794	+	8	99	70.57	-2.34	0.24	0.508155
11236	dm3.chr3R	19,683,934 – 19,684,016	- - - - - - - -	15435	19,683,934 – 19,684,016	+	3	93	56.15	-1.07	0.53	0.773765
11236	dm3.chr3R	19,683,934 – 19,684,016	- - - - - - - -	15436	19,683,934 – 19,684,016	-	3	93	56.15	-1.00	0.60	0.877767
11237	dm3.chr3R	19,685,160 – 19,685,280	FBnoncoding="snRNA;ID=FBtr0084528;Name=snRNA:U1:95Ca-RA;Parent=FBgn0004185;Alias=CR31341-RA;Dbxref=FlyBase_Annotation_IDs:CR31341-RA,REFSEQ:NR_002078;score_text=Weakly" - - - "Rfam_10.0=RF00003;U1;AY187768.1/1130-1294\|2.6e-45" "Noncode_2.0=n5572_u344_X53544_snRNA_Drosophila\|6.5e-46" "unique_Noncode_2.0=u3858_snRNA_Drosophila\|5.7e-46" -	15437	19,685,160 – 19,685,280	+	10	131	83.24	-2.21	0.82	0.987526
11237	dm3.chr3R	19,685,160 – 19,685,280		15438	19,685,160 – 19,685,280	-	10	131	83.24	-1.40	0.85	0.905682
11238	dm3.chr3R	19,687,790 – 19,687,887	- - - - - - - -	15439	19,687,790 – 19,687,887	-	12	105	72.28	-0.54	0.60	0.685320
11239	dm3.chr3R	19,705,812 – 19,705,920	- - - intron="intron;ID=intron_FBgn0025574:12_FBgn0025574:9;Name=Pli-in;Parent=FBtr0112908;parent_type=mRNA" - - - -	15440	19,705,812 – 19,705,920	-	7	114	60.39	-1.99	0.24	0.852486
11240	dm3.chr3R	19,715,598 – 19,715,692	- - - - - - - -	15441	19,715,598 – 19,715,692	+	6	100	75.57	-1.09	0.62	0.556942
11241	dm3.chr3R	19,718,344 – 19,718,438	- - CDS="CDS;ID=CDS_CG13597:2_86;Name=CG13597-cds;Parent=FBtr0084525;parent_type=mRNA" - - - - -	15442	19,718,344 – 19,718,438	+	6	95	59.96	-1.27	0.29	0.500000
11242	dm3.chr3R	19,720,673 – 19,720,795	- - - - - - - -	15443	19,720,673 – 19,720,776	+	13	115	66.60	-1.36	0.39	0.810790
				15444	19,720,673 – 19,720,776	-	13	115	66.60	-1.77	0.50	0.993654
				15445	19,720,704 – 19,720,795	+	6	101	70.98	-2.35	0.49	0.985982
11243	dm3.chr3R	19,725,163 – 19,725,263	- - CDS="CDS;ID=CDS_FBgn0016754:6_138;Name=sba-cds;Parent=FBtr0112889;parent_type=mRNA" - - - - -	15446	19,725,163 – 19,725,263	+	12	100	68.59	-1.44	0.39	0.836080
11244	dm3.chr3R	19,735,019 – 19,735,115	- - - intron="intron;ID=intron_FBgn0016754:8_FBgn0016754:7;Name=sba-in;Parent=FBtr0112888,FBtr0112889;parent_type=mRNA" - - - -	15447	19,735,019 – 19,735,115	+	5	105	70.94	-1.46	0.44	0.507652
11245	dm3.chr3R	19,736,123 – 19,736,191	- - - intron="intron;ID=intron_FBgn0016754:8_FBgn0016754:7;Name=sba-in;Parent=FBtr0112888,FBtr0112889;parent_type=mRNA" - - - -	15448	19,736,123 – 19,736,191	-	11	78	61.69	-2.61	0.74	0.999890
11246	dm3.chr3R	19,745,876 – 19,745,967	- - CDS="CDS;ID=CDS_FBgn0016754:9_138;Name=sba-cds;Parent=FBtr0112889;parent_type=mRNA" - - - - -	15449	19,745,876 – 19,745,967	+	6	100	67.94	-3.14	0.46	0.999409
11247	dm3.chr3R	19,748,001 – 19,748,103	- - - intron="intron;ID=intron_FBgn0016754:11_FBgn0016754:10;Name=sba-in;Parent=FBtr0112888,FBtr0112889;parent_type=mRNA" - - - -	15450	19,748,001 – 19,748,102	+	5	101	97.43	-1.38	0.97	0.794550
11247	dm3.chr3R	19,748,001 – 19,748,103		15451	19,748,003 – 19,748,103	+	5	101	96.41	-1.21	0.93	0.500000
11248	dm3.chr3R	19,752,297 – 19,752,405	- - - - - - - -	15452	19,752,297 – 19,752,405	-	12	111	61.11	-1.27	0.28	0.604999
11249	dm3.chr3R	19,753,168 – 19,753,319	- - CDS="CDS;ID=CDS_CG13601:1_86;Name=CG13601-cds;Parent=FBtr0084522;parent_type=mRNA" - - - - -	15453	19,753,168 – 19,753,288	+	15	120	75.85	-1.48	0.42	0.596412
				15454	19,753,208 – 19,753,318	+	14	116	67.37	-1.03	0.44	0.822208
				15455	19,753,208 – 19,753,318	-	14	116	67.37	-1.35	0.33	0.571015
				15456	19,753,209 – 19,753,319	+	14	117	66.85	-1.03	0.44	0.856773
				15457	19,753,209 – 19,753,319	-	14	117	66.85	-1.37	0.33	0.648668
11250	dm3.chr3R	19,760,077 – 19,760,242	- - - intron="intron;ID=intron_FBgn0039130:3_FBgn0039130:4;Name=CG5854-in;Parent=FBtr0084494;parent_type=mRNA" - - - -	15458	19,760,077 – 19,760,242	+	5	184	67.30	-2.62	0.43	0.992475
11250	dm3.chr3R	19,760,077 – 19,760,242		15459	19,760,077 – 19,760,242	-	5	184	67.30	-3.88	0.43	0.999729
11251	dm3.chr3R	19,763,112 – 19,763,211	- - - - - - - -	15460	19,763,112 – 19,763,211	-	14	110	72.04	-0.68	0.64	0.894611
11252	dm3.chr3R	19,798,294 – 19,798,393	- - - - - - - -	15461	19,798,294 – 19,798,393	-	14	119	75.70	-0.93	0.59	0.561716
11253	dm3.chr3R	19,799,878 – 19,799,972	- - CDS="CDS;ID=CDS_FBgn0051140:12_249;Name=CG31140-cds;Parent=FBtr0084497,FBtr0113392;parent_type=mRNA" - - - - -	15462	19,799,878 – 19,799,972	+	12	118	59.57	-2.05	0.28	0.940039
11254	dm3.chr3R	19,802,858 – 19,802,948	- - CDS="CDS;ID=CDS_FBgn0051140:16_253;Name=CG31140-cds;Parent=FBtr0300963;parent_type=mRNA" - - - - -	15463	19,802,858 – 19,802,948	-	15	120	78.71	-2.48	0.36	0.551239
11255	dm3.chr3R	19,803,263 – 19,803,353	- - CDS="CDS;ID=CDS_FBgn0051140:17_253;Name=CG31140-cds;Parent=FBtr0300963;parent_type=mRNA" - - - - -	15464	19,803,263 – 19,803,353	+	15	111	68.03	-0.66	0.59	0.899808
11256	dm3.chr3R	19,809,209 – 19,809,408	- - - - - - - -	15465	19,809,209 – 19,809,307	+	11	120	68.28	-4.42	0.54	0.999966
				15466	19,809,209 – 19,809,307	-	11	120	68.28	-2.89	0.34	0.992781
				15467	19,809,307 – 19,809,408	+	9	107	64.15	-0.73	0.48	0.807507
11257	dm3.chr3R	19,809,436 – 19,809,530	- - - - - - - -	15468	19,809,436 – 19,809,530	+	8	105	72.43	-0.77	0.79	0.919567
11257	dm3.chr3R	19,809,436 – 19,809,530	- - - - - - - -	15469	19,809,436 – 19,809,530	-	8	105	72.43	-0.80	0.60	0.704598
11258	dm3.chr3R	19,815,100 – 19,815,202	- - - - - - - -	15470	19,815,100 – 19,815,202	-	11	117	65.54	-0.82	0.47	0.751907
11259	dm3.chr3R	19,827,750 – 19,827,841	- - - intron="intron;ID=intron_FBgn0020647:6_FBgn0020647:5;Name=KrT95D-in;Parent=FBtr0084506,FBtr0084507,FBtr0301418,FBtr0301419;parent_type=mRNA" - - - -	15471	19,827,750 – 19,827,841	-	5	109	65.58	-1.47	0.59	0.964285
11260	dm3.chr3R	19,828,767 – 19,828,859	- - - intron="intron;ID=intron_FBgn0020647:7_FBgn0020647:6;Name=KrT95D-in;Parent=FBtr0084506,FBtr0084507,FBtr0301418,FBtr0301419;parent_type=mRNA" - - - -	15472	19,828,767 – 19,828,859	-	5	95	70.00	-1.80	0.48	0.923087
11261	dm3.chr3R	19,830,496 – 19,830,597	- - - intron="intron;ID=intron_FBgn0020647:9_FBgn0020647:7;Name=KrT95D-in;Parent=FBtr0301419;parent_type=mRNA" - - - -	15473	19,830,496 – 19,830,597	+	5	112	84.86	-1.73	0.71	0.530041
11261	dm3.chr3R	19,830,496 – 19,830,597		15474	19,830,496 – 19,830,597	-	5	112	84.86	-2.86	0.68	0.974207
11262	dm3.chr3R	19,830,837 – 19,830,971	- - - intron="intron;ID=intron_FBgn0020647:9_FBgn0020647:7;Name=KrT95D-in;Parent=FBtr0301419;parent_type=mRNA" - - - -	15475	19,830,837 – 19,830,971	+	6	141	64.54	-1.43	0.33	0.546823
11263	dm3.chr3R	19,832,992 – 19,833,061	- - - - - - - -	15476	19,832,992 – 19,833,061	-	6	73	70.43	-1.48	0.41	0.576184
11264	dm3.chr3R	19,836,078 – 19,836,264	- - - - - - - -	15477	19,836,078 – 19,836,171	-	5	93	83.21	-1.45	0.75	0.641946
				15478	19,836,112 – 19,836,210	+	5	99	91.26	-3.67	0.99	0.998855
				15479	19,836,112 – 19,836,210	-	5	99	91.26	-3.07	0.94	0.996826
				15480	19,836,132 – 19,836,234	+	4	114	83.56	-3.50	0.84	0.998312
				15481	19,836,132 – 19,836,234	-	4	114	83.56	-2.50	0.86	0.989174
				15482	19,836,171 – 19,836,264	-	5	105	55.97	-2.36	0.19	0.868129
11265	dm3.chr3R	19,843,034 – 19,843,134	- - - intron="intron;ID=intron_FBgn0020647:14_FBgn0020647:12;Name=KrT95D-in;Parent=FBtr0084507;parent_type=mRNA" - - - -	15483	19,843,034 – 19,843,134	-	3	100	90.00	-1.02	0.96	0.669935
11266	dm3.chr3R	19,846,049 – 19,846,143	- - - intron="intron;ID=intron_FBgn0020647:14_FBgn0020647:12;Name=KrT95D-in;Parent=FBtr0084507;parent_type=mRNA" - - - -	15484	19,846,049 – 19,846,143	-	4	94	74.73	-2.04	0.64	0.961600
11267	dm3.chr3R	19,849,674 – 19,849,773	- - - intron="intron;ID=intron_FBgn0020647:14_FBgn0020647:12;Name=KrT95D-in;Parent=FBtr0084507;parent_type=mRNA" - - - -	15485	19,849,674 – 19,849,773	+	7	104	69.15	-1.46	0.43	0.610560
11268	dm3.chr3R	19,852,646 – 19,852,752	- - - intron="intron;ID=intron_FBgn0020647:14_FBgn0020647:12;Name=KrT95D-in;Parent=FBtr0084507;parent_type=mRNA" - - - -	15486	19,852,646 – 19,852,752	+	7	110	69.05	-1.37	0.38	0.619448
11269	dm3.chr3R	19,853,506 – 19,853,619	- - - intron="intron;ID=intron_FBgn0020647:14_FBgn0020647:12;Name=KrT95D-in;Parent=FBtr0084507;parent_type=mRNA" - - - -	15487	19,853,506 – 19,853,619	+	5	120	87.63	-1.99	0.85	0.924383
11270	dm3.chr3R	19,897,914 – 19,897,964	- - - intron="intron;ID=intron_FBgn0053100:5_FBgn0053100:4;Name=4EHP-in;Parent=FBtr0300475;parent_type=mRNA" - - - -	15488	19,897,914 – 19,897,964	-	3	51	55.26	-1.65	0.60	0.993943
11271	dm3.chr3R	19,917,976 – 19,918,112	- - - intron="intron;ID=intron_FBgn0053100:5_FBgn0053100:4;Name=4EHP-in;Parent=FBtr0300475;parent_type=mRNA" - - - -	15489	19,917,976 – 19,918,079	+	6	107	78.79	-1.86	0.52	0.672241
11271	dm3.chr3R	19,917,976 – 19,918,112		15490	19,918,002 – 19,918,112	+	8	114	68.27	-1.17	0.40	0.561053
11272	dm3.chr3R	19,930,077 – 19,930,133	- - CDS="CDS;ID=CDS_FBgn0013343:3_224;Name=Syx1A-cds;Parent=FBtr0303161;parent_type=mRNA" - - - - -	15491	19,930,077 – 19,930,133	-	14	59	80.29	-1.75	0.64	0.912533
11273	dm3.chr3R	19,945,989 – 19,946,067	- - - - - - - -	15492	19,945,989 – 19,946,067	+	11	85	71.54	-0.89	0.89	0.967864
11274	dm3.chr3R	19,948,151 – 19,948,351	- - - intron="intron;ID=intron_FBgn0039152:3_FBgn0039152:4;Name=CG6129-in;Parent=FBtr0304161;parent_type=mRNA" - - - -	15493	19,948,151 – 19,948,249	+	6	120	83.42	-1.94	0.68	0.750932
11274	dm3.chr3R	19,948,151 – 19,948,351		15494	19,948,249 – 19,948,351	-	7	120	71.42	-1.99	0.35	0.616175
11275	dm3.chr3R	19,950,143 – 19,950,216	- - - - - - - -	15495	19,950,143 – 19,950,216	-	11	77	60.25	-1.78	0.21	0.645205
11276	dm3.chr3R	19,952,525 – 19,952,627	- - - intron="intron;ID=intron_FBgn0039152:7_FBgn0039152:8;Name=CG6129-in;Parent=FBtr0304161;parent_type=mRNA" - - - -	15496	19,952,525 – 19,952,627	+	3	111	69.11	-1.71	0.66	0.898513
11276	dm3.chr3R	19,952,525 – 19,952,627		15497	19,952,525 – 19,952,627	-	3	111	69.11	-1.84	0.64	0.917808
11277	dm3.chr3R	19,953,541 – 19,953,636	- - - - - - - -	15498	19,953,541 – 19,953,636	+	12	115	71.33	-1.96	0.57	0.990428
11278	dm3.chr3R	19,953,673 – 19,953,767	- - - - - - - -	15499	19,953,673 – 19,953,767	+	12	118	70.04	-1.53	0.66	0.985898
11278	dm3.chr3R	19,953,673 – 19,953,767	- - - - - - - -	15500	19,953,673 – 19,953,767	-	12	118	70.04	-1.71	0.53	0.967940
11279	dm3.chr3R	19,964,185 – 19,964,278	- - - intron="intron;ID=intron_FBgn0039154:1_FBgn0039154:2;Name=Npc2f-in;Parent=FBtr0084548;parent_type=mRNA" - - - -	15501	19,964,185 – 19,964,278	-	6	99	69.05	-2.08	0.41	0.938944
11280	dm3.chr3R	19,972,368 – 19,972,465	- - CDS="CDS;ID=CDS_FBgn0039155:5_115;Name=kal-1-cds;Parent=FBtr0084549;parent_type=mRNA" - - - - -	15502	19,972,368 – 19,972,465	-	12	118	78.13	-2.02	0.42	0.609939
11281	dm3.chr3R	19,974,568 – 19,974,623	- - CDS="CDS;ID=CDS_FBgn0051133:1_94;Name=Slimp-cds;Parent=FBtr0084583;parent_type=mRNA" - - - - -	15503	19,974,568 – 19,974,623	+	8	56	68.78	-1.54	0.53	0.982003
11282	dm3.chr3R	19,978,635 – 19,978,692	- - - intron="intron;ID=intron_FBgn0039156:1_FBgn0039156:2;Name=CG6178-in;Parent=FBtr0084550;parent_type=mRNA" - - - -	15504	19,978,635 – 19,978,692	+	5	57	90.51	-1.67	0.92	0.904031
11282	dm3.chr3R	19,978,635 – 19,978,692		15505	19,978,635 – 19,978,692	-	5	57	90.51	-1.70	0.96	0.950287
11283	dm3.chr3R	19,982,951 – 19,983,043	- - CDS="CDS;ID=CDS_CG5501:26_12;Name=Myo95E-cds;Parent=FBtr0100519;parent_type=mRNA" - - - - -	15506	19,982,951 – 19,983,043	-	12	115	81.26	-2.15	0.82	0.986597
11284	dm3.chr3R	19,991,442 – 19,991,536	- - CDS="CDS;ID=CDS_CG6193:2_17;Name=Apc2-cds;Parent=FBtr0084552;parent_type=mRNA" - - - - -	15507	19,991,442 – 19,991,536	-	13	108	66.08	-0.73	0.40	0.523217
11285	dm3.chr3R	19,996,964 – 19,997,029	- - - - - - - -	15508	19,996,964 – 19,997,029	+	7	75	60.84	-1.37	0.48	0.968586
11286	dm3.chr3R	20,010,033 – 20,010,160	- - - - - - - -	15509	20,010,033 – 20,010,142	+	6	116	67.97	-1.81	0.50	0.977484
11286	dm3.chr3R	20,010,033 – 20,010,160	- - - - - - - -	15510	20,010,042 – 20,010,160	+	6	120	73.87	-1.77	0.47	0.798844
11287	dm3.chr3R	20,025,962 – 20,026,015	- - - intron="intron;ID=intron_CG31137:12_CG31137:6;Name=twin-in;Parent=FBtr0084570;parent_type=mRNA" - - - -	15511	20,025,962 – 20,026,015	+	6	61	72.50	-2.66	0.49	0.992820
11287	dm3.chr3R	20,025,962 – 20,026,015		15512	20,025,962 – 20,026,015	-	6	61	72.50	-1.90	0.50	0.921670
11288	dm3.chr3R	20,027,991 – 20,028,101	- - - - - - - -	15513	20,027,991 – 20,028,101	+	5	118	87.00	-2.01	0.82	0.909853
11289	dm3.chr3R	20,051,801 – 20,051,892	- - CDS="CDS;ID=CDS_FBgn0039169:1_247;Name=Spps-cds;Parent=FBtr0084565;parent_type=mRNA" - - - - -	15514	20,051,801 – 20,051,892	+	4	91	99.45	-1.63	1.01	0.937935
11289	dm3.chr3R	20,051,801 – 20,051,892		15515	20,051,801 – 20,051,892	-	4	91	99.45	-1.68	0.99	0.916794
11290	dm3.chr3R	20,056,159 – 20,056,271	- - - - - - - -	15516	20,056,159 – 20,056,271	+	6	113	71.99	-1.12	0.49	0.512832
11291	dm3.chr3R	20,058,394 – 20,058,486	- - CDS="CDS;ID=CDS_FBgn0043884:2_249;Name=mask-cds;Parent=FBtr0084562,FBtr0084563,FBtr0305043;parent_type=mRNA" - - - - -	15517	20,058,394 – 20,058,486	-	10	94	68.69	-1.13	0.45	0.878667
11292	dm3.chr3R	20,065,762 – 20,065,853	- - CDS="CDS;ID=CDS_FBgn0043884:13_249;Name=mask-cds;Parent=FBtr0305043;parent_type=mRNA" - - - - -	15518	20,065,762 – 20,065,853	+	13	120	62.12	-1.32	0.31	0.527779
11293	dm3.chr3R	20,065,997 – 20,066,146	- - CDS="CDS;ID=CDS_FBgn0043884:13_249;Name=mask-cds;Parent=FBtr0305043;parent_type=mRNA" - - - - -	15519	20,065,997 – 20,066,112	-	13	119	63.71	-1.46	0.38	0.963894
				15520	20,066,033 – 20,066,146	+	13	113	59.60	-1.42	0.28	0.820080
				15521	20,066,033 – 20,066,146	-	13	113	59.60	-1.36	0.34	0.939739
11294	dm3.chr3R	20,089,777 – 20,089,859	- - - - - - - -	15522	20,089,777 – 20,089,859	-	9	84	70.17	-1.45	0.45	0.878416
11295	dm3.chr3R	20,090,944 – 20,091,091	FBnoncoding="tRNA;ID=FBtr0084597;Name=tRNA:CR31130-RA;Parent=FBgn0051130;Alias=CR31130-RA;Dbxref=FlyBase_Annotation_IDs:CR31130-RA;score_text=Weakly" tRNAscann="Leu_chr3R_trna35" - - "Rfam_10.0=RF00005;tRNA;ABJB010959698.1/51-134\|4.2e-29" - - -	15523	20,090,944 – 20,091,057	+	13	121	84.32	-1.49	0.73	0.748312
				15524	20,090,974 – 20,091,091	+	13	122	81.53	-2.26	0.94	0.995143
				15525	20,090,974 – 20,091,091	-	13	122	81.53	-1.39	0.85	0.948377
11296	dm3.chr3R	20,102,000 – 20,102,098	- - - - - - - -	15526	20,102,000 – 20,102,098	-	6	109	71.79	-1.82	0.42	0.718059
11297	dm3.chr3R	20,111,576 – 20,111,670	- - - intron="intron;ID=intron_CG6356:1_CG6356:2;Name=CG6356-in;Parent=FBtr0084601;parent_type=mRNA" - - - -	15527	20,111,576 – 20,111,670	-	10	96	65.99	-0.83	0.42	0.541176
11298	dm3.chr3R	20,127,632 – 20,127,732	- - - intron="intron;ID=intron_FBgn0259685:1_FBgn0259685:2;Name=crb-in;Parent=FBtr0304726,FBtr0084603,FBtr0111008;parent_type=mRNA" - - - -	15528	20,127,632 – 20,127,732	+	5	108	94.19	-1.66	0.93	0.860431
11299	dm3.chr3R	20,131,340 – 20,131,459	- - - intron="intron;ID=intron_FBgn0259685:2_FBgn0259685:3;Name=crb-in;Parent=FBtr0304726,FBtr0084603,FBtr0111008;parent_type=mRNA" - - - -	15529	20,131,340 – 20,131,440	-	7	121	63.07	-1.14	0.46	0.823380
11299	dm3.chr3R	20,131,340 – 20,131,459		15530	20,131,354 – 20,131,459	-	6	106	82.21	-2.01	0.68	0.882690
11300	dm3.chr3R	20,176,133 – 20,176,188	- - - intron="intron;ID=intron_FBgn0039187:3_FBgn0039187:4;Name=CG6454-in;Parent=FBtr0273323;parent_type=mRNA" - - - -	15531	20,176,133 – 20,176,188	-	6	59	79.88	-2.30	0.54	0.902923
11301	dm3.chr3R	20,198,110 – 20,198,226	- - CDS="CDS;ID=CDS_FBgn0039195:4_133;Name=CG17782-cds;Parent=FBtr0084624;parent_type=mRNA" - - - - -	15532	20,198,110 – 20,198,226	+	9	117	79.51	-1.49	0.57	0.578347
11301	dm3.chr3R	20,198,110 – 20,198,226		15533	20,198,110 – 20,198,226	-	9	117	79.51	-1.27	0.63	0.579002
11302	dm3.chr3R	20,202,209 – 20,202,314	- - - - - - - -	15534	20,202,209 – 20,202,311	+	5	116	75.57	-1.66	0.55	0.666610
11302	dm3.chr3R	20,202,209 – 20,202,314	- - - - - - - -	15535	20,202,215 – 20,202,314	+	5	115	74.10	-1.60	0.52	0.621619
11303	dm3.chr3R	20,214,549 – 20,214,679	- - - intron="intron;ID=intron_FBgn0039198:5_FBgn0039198:3;Name=CG5768-in;Parent=FBtr0110867;parent_type=mRNA" - - - -	15536	20,214,549 – 20,214,664	+	12	115	80.44	-1.07	0.76	0.813322
				15537	20,214,549 – 20,214,664	-	12	115	80.44	-0.97	0.66	0.500000
				15538	20,214,584 – 20,214,679	-	10	120	86.14	-1.23	0.92	0.859308
11304	dm3.chr3R	20,221,911 – 20,222,026	- - - - - - - -	15539	20,221,911 – 20,222,026	+	11	119	86.37	-0.96	0.88	0.582301
11305	dm3.chr3R	20,225,092 – 20,225,197	- - - - - - - -	15540	20,225,092 – 20,225,190	+	4	98	80.60	-1.50	0.69	0.543374
				15541	20,225,092 – 20,225,190	-	4	98	80.60	-2.32	0.84	0.988354
				15542	20,225,093 – 20,225,197	+	5	104	76.06	-2.52	0.69	0.992912
				15543	20,225,093 – 20,225,197	-	5	104	76.06	-2.47	0.83	0.995889
11306	dm3.chr3R	20,227,327 – 20,227,470	- - - - - - - -	15544	20,227,327 – 20,227,447	-	13	121	81.59	-1.71	0.68	0.935313
				15545	20,227,350 – 20,227,470	+	13	121	86.02	-2.02	0.63	0.815537
				15546	20,227,350 – 20,227,470	-	13	121	86.02	-3.99	0.88	0.999253
11307	dm3.chr3R	20,248,446 – 20,248,537	- - - intron="intron;ID=intron_CG5610:2_CG5610:3;Name=nAcRalpha-96Aa-in;Parent=FBtr0084619;parent_type=mRNA" - - - -	15547	20,248,446 – 20,248,537	+	8	99	75.80	-1.69	0.58	0.840217
11308	dm3.chr3R	20,249,056 – 20,249,157	- - - intron="intron;ID=intron_CG5610:2_CG5610:3;Name=nAcRalpha-96Aa-in;Parent=FBtr0084619;parent_type=mRNA" - - - -	15548	20,249,056 – 20,249,157	-	12	116	82.60	-2.83	0.40	0.820327
11309	dm3.chr3R	20,257,730 – 20,257,856	- - - intron="intron;ID=intron_CG5610:2_CG5610:3;Name=nAcRalpha-96Aa-in;Parent=FBtr0084619;parent_type=mRNA" - - - -	15549	20,257,730 – 20,257,820	+	6	104	77.76	-2.31	0.49	0.858195
				15550	20,257,730 – 20,257,820	-	6	104	77.76	-3.35	0.61	0.998414
				15551	20,257,755 – 20,257,856	+	6	112	72.66	-3.18	0.42	0.995797
				15552	20,257,755 – 20,257,856	-	6	112	72.66	-3.34	0.47	0.998668
11310	dm3.chr3R	20,262,985 – 20,263,067	- - - intron="intron;ID=intron_CG5610:2_CG5610:3;Name=nAcRalpha-96Aa-in;Parent=FBtr0084619;parent_type=mRNA" - - - -	15553	20,262,985 – 20,263,067	-	12	88	70.97	-0.57	0.63	0.807671
11311	dm3.chr3R	20,267,463 – 20,267,541	- - - intron="intron;ID=intron_CG5610:2_CG5610:3;Name=nAcRalpha-96Aa-in;Parent=FBtr0084619;parent_type=mRNA" - - - -	15554	20,267,463 – 20,267,541	+	10	89	84.76	-1.77	0.65	0.724440
11312	dm3.chr3R	20,277,919 – 20,278,062	- - - - - - - -	15555	20,277,919 – 20,278,039	+	11	120	91.38	-2.35	0.71	0.784540
				15556	20,277,919 – 20,278,039	-	11	120	91.38	-2.68	0.84	0.982464
				15557	20,277,959 – 20,278,062	-	12	111	80.37	-1.92	0.84	0.988421
11313	dm3.chr3R	20,279,477 – 20,279,592	- - - intron="intron;ID=intron_CG5610:1_CG5610:2;Name=nAcRalpha-96Aa-in;Parent=FBtr0084619;parent_type=mRNA" - - - -	15558	20,279,477 – 20,279,582	+	8	114	77.59	-2.64	0.32	0.688769
				15559	20,279,477 – 20,279,582	-	8	114	77.59	-2.04	0.50	0.868933
				15560	20,279,488 – 20,279,592	-	9	114	78.01	-1.80	0.57	0.889088
11314	dm3.chr3R	20,283,081 – 20,283,132	- - - - - - - -	15561	20,283,081 – 20,283,132	+	4	52	90.29	-1.74	0.84	0.724856
11314	dm3.chr3R	20,283,081 – 20,283,132	- - - - - - - -	15562	20,283,081 – 20,283,132	-	4	52	90.29	-2.09	0.90	0.953336
11315	dm3.chr3R	20,283,677 – 20,283,790	- - - - - - - -	15563	20,283,677 – 20,283,790	+	6	123	68.86	-1.01	0.48	0.531538
11315	dm3.chr3R	20,283,677 – 20,283,790	- - - - - - - -	15564	20,283,677 – 20,283,790	-	6	123	68.86	-2.04	0.51	0.988781
11316	dm3.chr3R	20,289,651 – 20,289,781	- - - - - - - -	15565	20,289,651 – 20,289,744	-	5	93	77.57	-1.37	0.68	0.643046
				15566	20,289,687 – 20,289,781	+	6	112	73.68	-1.08	0.63	0.603639
				15567	20,289,687 – 20,289,781	-	6	112	73.68	-1.29	0.61	0.724545
11317	dm3.chr3R	20,292,304 – 20,292,476	- - - - - - - -	15568	20,292,304 – 20,292,383	-	7	91	69.98	-0.90	0.53	0.658534
11317	dm3.chr3R	20,292,304 – 20,292,476	- - - - - - - -	15569	20,292,383 – 20,292,476	-	8	119	78.98	-1.70	0.64	0.786081
11318	dm3.chr3R	20,297,484 – 20,297,537	- - - - - - - -	15570	20,297,484 – 20,297,537	+	6	56	74.20	-2.65	0.37	0.933664
11319	dm3.chr3R	20,298,245 – 20,298,339	- - - - - - - -	15571	20,298,245 – 20,298,339	+	8	104	71.97	-0.76	0.56	0.582298
11320	dm3.chr3R	20,304,070 – 20,304,166	- - - - - - - -	15572	20,304,070 – 20,304,166	-	6	100	82.59	-1.61	0.77	0.830706
11321	dm3.chr3R	20,304,383 – 20,304,487	- - - - - - - -	15573	20,304,383 – 20,304,487	-	5	104	73.82	-1.92	0.46	0.629403
11322	dm3.chr3R	20,306,285 – 20,306,377	- - - - - - - -	15574	20,306,285 – 20,306,377	+	5	102	64.72	-1.20	0.62	0.959751
11323	dm3.chr3R	20,322,381 – 20,322,484	- - - - - - - -	15575	20,322,381 – 20,322,484	+	3	103	78.11	-2.53	0.68	0.962966
11323	dm3.chr3R	20,322,381 – 20,322,484	- - - - - - - -	15576	20,322,381 – 20,322,484	-	3	103	78.11	-1.37	0.80	0.689302
11324	dm3.chr3R	20,333,279 – 20,333,376	- - - - - - - -	15577	20,333,279 – 20,333,376	+	4	101	87.63	-1.44	0.91	0.818194
11325	dm3.chr3R	20,381,030 – 20,381,121	FBnoncoding="tRNA;ID=FBtr0084649;Name=tRNA:D:96A-RA;Parent=FBgn0011845;Dbxref=FlyBase_Annotation_IDs:CR31540-RA;score_text=Weakly" tRNAscann="Asp_chr3R_trna36" - intron="intron;ID=intron_FBgn0039208:11_FBgn0039208:12;Name=Esyt2-in;Parent=FBtr0084647,FBtr0084648,FBtr0306024;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010887279.1/1267-1338\|3.6e-25" - - -	15578	20,381,030 – 20,381,121	+	11	102	73.27	-0.86	0.68	0.896857
11325	dm3.chr3R	20,381,030 – 20,381,121		15579	20,381,030 – 20,381,121	-	11	102	73.27	-0.95	0.68	0.922907
11326	dm3.chr3R	20,392,055 – 20,392,153	- - - intron="intron;ID=intron_FBgn0039209:6_FBgn0039209:5;Name=CG13624-in;Parent=FBtr0084675;parent_type=mRNA" - - - -	15580	20,392,055 – 20,392,153	+	5	99	89.89	-2.61	0.77	0.951356
11326	dm3.chr3R	20,392,055 – 20,392,153		15581	20,392,055 – 20,392,153	-	5	99	89.89	-2.80	0.81	0.982303
11327	dm3.chr3R	20,408,250 – 20,408,333	- - - - - - - -	15582	20,408,250 – 20,408,333	+	5	88	90.65	-2.37	0.92	0.983528
11328	dm3.chr3R	20,412,586 – 20,412,705	- - - intron="intron;ID=intron_FBgn0083077:1_FBgn0083077:3;Name=mld-in;Parent=FBtr0111012,FBtr0304913,FBtr0304915;parent_type=mRNA" - - - -	15583	20,412,586 – 20,412,705	+	5	120	92.22	-2.31	0.76	0.793696
11329	dm3.chr3R	20,413,818 – 20,413,912	- - - intron="intron;ID=intron_FBgn0083077:1_FBgn0083077:3;Name=mld-in;Parent=FBtr0111012,FBtr0304913,FBtr0304915;parent_type=mRNA" - - - -	15584	20,413,818 – 20,413,912	-	4	113	81.96	-2.27	0.56	0.595627
11330	dm3.chr3R	20,414,371 – 20,414,490	- - - intron="intron;ID=intron_FBgn0083077:1_FBgn0083077:3;Name=mld-in;Parent=FBtr0111012,FBtr0304913,FBtr0304915;parent_type=mRNA" - - - -	15585	20,414,371 – 20,414,490	+	5	120	93.85	-1.88	0.84	0.686657
11331	dm3.chr3R	20,414,779 – 20,414,899	- - - intron="intron;ID=intron_FBgn0083077:1_FBgn0083077:3;Name=mld-in;Parent=FBtr0111012,FBtr0304913,FBtr0304915;parent_type=mRNA" - - - -	15586	20,414,779 – 20,414,899	-	5	120	91.75	-1.00	0.93	0.514527
11332	dm3.chr3R	20,416,002 – 20,416,082	- - - intron="intron;ID=intron_FBgn0083077:2_FBgn0083077:3;Name=mld-in;Parent=FBtr0304912,FBtr0304914;parent_type=mRNA" - - - -	15587	20,416,002 – 20,416,082	-	6	81	75.82	-1.66	0.51	0.717327
11333	dm3.chr3R	20,417,416 – 20,417,536	- - - intron="intron;ID=intron_FBgn0083077:3_FBgn0083077:4;Name=mld-in;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - -	15588	20,417,416 – 20,417,536	+	5	120	90.77	-2.61	0.65	0.726421
11334	dm3.chr3R	20,418,981 – 20,419,096	- - - intron="intron;ID=intron_FBgn0083077:3_FBgn0083077:4;Name=mld-in;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - -	15589	20,418,981 – 20,419,096	-	6	117	66.27	-1.03	0.51	0.853300
11335	dm3.chr3R	20,419,749 – 20,419,800	- - - intron="intron;ID=intron_FBgn0083077:3_FBgn0083077:4;Name=mld-in;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - -	15590	20,419,749 – 20,419,800	-	5	56	92.29	-1.20	0.93	0.633720
11336	dm3.chr3R	20,420,318 – 20,420,415	- - - intron="intron;ID=intron_FBgn0083077:3_FBgn0083077:4;Name=mld-in;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - -	15591	20,420,318 – 20,420,415	-	5	115	75.95	-1.66	0.52	0.541071
11337	dm3.chr3R	20,422,940 – 20,423,048	- - - intron="intron;ID=intron_FBgn0083077:3_FBgn0083077:4;Name=mld-in;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - -	15592	20,422,940 – 20,423,048	+	4	112	81.93	-1.68	0.68	0.576293
11338	dm3.chr3R	20,424,859 – 20,424,971	- - - intron="intron;ID=intron_FBgn0083077:3_FBgn0083077:4;Name=mld-in;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - -	15593	20,424,859 – 20,424,971	-	7	134	58.82	-1.99	0.22	0.664121
11339	dm3.chr3R	20,425,172 – 20,425,264	- - - intron="intron;ID=intron_FBgn0083077:3_FBgn0083077:4;Name=mld-in;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - -	15594	20,425,172 – 20,425,262	-	5	100	76.00	-1.78	0.55	0.687917
11339	dm3.chr3R	20,425,172 – 20,425,264		15595	20,425,174 – 20,425,264	-	5	100	77.36	-1.48	0.68	0.729893
11340	dm3.chr3R	20,427,423 – 20,427,492	- - - intron="intron;ID=intron_FBgn0083077:3_FBgn0083077:4;Name=mld-in;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - -	15596	20,427,423 – 20,427,492	-	5	75	58.20	-1.24	0.43	0.929065
11341	dm3.chr3R	20,429,795 – 20,429,886	- - - intron="intron;ID=intron_FBgn0083077:3_FBgn0083077:4;Name=mld-in;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - -	15597	20,429,795 – 20,429,886	-	3	92	93.48	-1.05	0.97	0.654376
11342	dm3.chr3R	20,431,432 – 20,431,529	- - - intron="intron;ID=intron_FBgn0083077:3_FBgn0083077:4;Name=mld-in;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - -	15598	20,431,432 – 20,431,529	+	5	107	72.76	-1.60	0.45	0.580761
11343	dm3.chr3R	20,435,956 – 20,436,038	- - - intron="intron;ID=intron_FBgn0083077:3_FBgn0083077:4;Name=mld-in;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - -	15599	20,435,956 – 20,436,038	-	4	82	80.20	-2.58	0.52	0.879830
11344	dm3.chr3R	20,443,270 – 20,443,429	- - CDS="CDS;ID=CDS_FBgn0083077:4_243;Name=mld-cds;Parent=FBtr0111012,FBtr0304912,FBtr0304913,FBtr0304914,FBtr0304915;parent_type=mRNA" - - - - -	15600	20,443,270 – 20,443,429	+	10	159	73.68	-2.80	0.53	0.999172
11344	dm3.chr3R	20,443,270 – 20,443,429		15601	20,443,270 – 20,443,429	-	10	159	73.68	-1.39	0.41	0.579946
11345	dm3.chr3R	20,447,662 – 20,447,734	- - - intron="intron;ID=intron_FBgn0083077:6_FBgn0083077:7;Name=mld-in;Parent=FBtr0304913,FBtr0304914;parent_type=mRNA" - - - -	15602	20,447,662 – 20,447,734	+	5	74	90.01	-1.82	0.96	0.965863
11346	dm3.chr3R	20,449,635 – 20,449,688	- - - - - - - -	15603	20,449,635 – 20,449,688	+	4	56	68.50	-1.76	0.52	0.900790
11347	dm3.chr3R	20,454,802 – 20,454,905	- - - intron="intron;ID=intron_CG31127:1_CG31127:2;Name=Wsck-in;Parent=FBtr0084669;parent_type=mRNA" - - - -	15604	20,454,802 – 20,454,905	+	6	105	76.40	-1.37	0.55	0.588030
11348	dm3.chr3R	20,455,805 – 20,455,899	- - - - - - - -	15605	20,455,805 – 20,455,899	+	9	107	75.51	-1.42	0.51	0.572729
11349	dm3.chr3R	20,463,670 – 20,463,802	- - CDS="CDS;ID=CDS_FBgn0039214:3_261;Name=CG5794-cds;Parent=FBtr0084668,FBtr0306172;parent_type=mRNA" - - - - -	15606	20,463,670 – 20,463,802	+	13	140	76.53	-1.48	0.50	0.772725
11350	dm3.chr3R	20,467,181 – 20,467,269	- - CDS="CDS;ID=CDS_FBgn0039214:16_261;Name=CG5794-cds;Parent=FBtr0084667,FBtr0084668,FBtr0306172;parent_type=mRNA" - - - - -	15607	20,467,181 – 20,467,269	-	14	88	85.44	-2.80	0.57	0.971491
11351	dm3.chr3R	20,472,603 – 20,472,701	- - CDS="CDS;ID=CDS_FBgn0039214:20_261;Name=CG5794-cds;Parent=FBtr0084667,FBtr0084668,FBtr0306172;parent_type=mRNA" - - - - -	15608	20,472,603 – 20,472,701	-	7	113	74.93	-2.29	0.60	0.987548
11352	dm3.chr3R	20,476,663 – 20,476,739	- - CDS="CDS;ID=CDS_FBgn0000139:3_267;Name=ash2-cds;Parent=FBtr0084660;parent_type=mRNA" - - - - -	15609	20,476,663 – 20,476,739	-	13	77	64.87	-0.78	0.36	0.518481
11353	dm3.chr3R	20,497,681 – 20,497,774	- - - - - - - -	15610	20,497,681 – 20,497,774	+	3	97	50.36	-1.44	0.42	0.901327
11354	dm3.chr3R	20,501,331 – 20,501,405	- - - - - - - -	15611	20,501,331 – 20,501,405	+	14	74	88.05	-2.43	0.77	0.980906
11354	dm3.chr3R	20,501,331 – 20,501,405	- - - - - - - -	15612	20,501,331 – 20,501,405	-	14	74	88.05	-1.92	0.70	0.820697
11355	dm3.chr3R	20,517,496 – 20,517,670	- - CDS="CDS;ID=CDS_FBgn0003429:17_100;Name=slo-cds;Parent=FBtr0100631,FBtr0100632,FBtr0100633,FBtr0100634,FBtr0100635,FBtr0100636,FBtr0100637,FBtr0100638;parent_type=mRNA" - - - - -	15613	20,517,496 – 20,517,670	+	15	177	81.32	-1.86	0.52	0.767958
11356	dm3.chr3R	20,518,222 – 20,518,313	- - - intron="intron;ID=intron_FBgn0003429:18_FBgn0003429:20;Name=slo-in;Parent=FBtr0084683,FBtr0084684,FBtr0100622,FBtr0100623,FBtr0100624,FBtr0100629,FBtr0100631,FBtr0100632,FBtr0100633,FBtr0100634,FBtr0100635,FBtr0301581,FBtr0301582;parent_type=mRNA" - - - -	15614	20,518,222 – 20,518,313	+	8	110	60.65	-3.68	0.21	0.997600
11356	dm3.chr3R	20,518,222 – 20,518,313		15615	20,518,222 – 20,518,313	-	8	110	60.65	-4.05	0.12	0.993307
11357	dm3.chr3R	20,542,951 – 20,543,053	- - CDS="CDS;ID=CDS_CG13627:4_92;Name=CG13627-cds;Parent=FBtr0084686,FBtr0084687;parent_type=mRNA" - - - - -	15616	20,542,951 – 20,543,053	-	12	116	65.03	-1.65	0.29	0.714417
11358	dm3.chr3R	20,553,753 – 20,553,845	- - CDS="CDS;ID=CDS_CG6863:2_38;Name=tok-cds;Parent=FBtr0084689;parent_type=mRNA" - - - - -	15617	20,553,753 – 20,553,845	-	5	92	90.87	-1.50	0.87	0.668518
11359	dm3.chr3R	20,559,531 – 20,559,640	- - - intron="intron;ID=intron_CG6863:2_CG6863:3;Name=tok-in;Parent=FBtr0084689,FBtr0084690;parent_type=mRNA" - - - -	15618	20,559,531 – 20,559,640	-	6	113	62.74	-1.83	0.27	0.759187
11360	dm3.chr3R	20,589,608 – 20,589,712	- - - intron="intron;ID=intron_CG13633:1_CG13633:2;Name=Ast-in;Parent=FBtr0084744;parent_type=mRNA" - - - -	15619	20,589,608 – 20,589,712	+	7	110	76.26	-1.25	0.59	0.622261
11361	dm3.chr3R	20,617,567 – 20,617,624	- - - intron="intron;ID=intron_CG6892:1_CG6892:2;Name=Ets96B-in;Parent=FBtr0084696;parent_type=mRNA" - - - -	15620	20,617,567 – 20,617,624	+	5	57	85.44	-1.65	0.78	0.734862
11362	dm3.chr3R	20,623,109 – 20,623,264	- - - - - - - -	15621	20,623,109 – 20,623,264	+	6	181	64.85	-1.11	0.45	0.714691
11363	dm3.chr3R	20,632,026 – 20,632,132	- - - - - - - -	15622	20,632,026 – 20,632,132	-	12	127	66.27	-2.30	0.36	0.990906
11364	dm3.chr3R	20,632,483 – 20,632,603	- - CDS="CDS;ID=CDS_CG5807:7_54;Name=CG5807-cds;Parent=FBtr0084739;parent_type=mRNA" - - - - -	15623	20,632,483 – 20,632,603	-	15	120	74.74	-1.25	0.44	0.692451
11365	dm3.chr3R	20,641,178 – 20,641,301	- - CDS="CDS;ID=CDS_FBgn0027617:2_100;Name=CG5808-cds;Parent=FBtr0084738;parent_type=mRNA" - - - - -	15624	20,641,178 – 20,641,301	-	6	126	75.53	-2.95	0.59	0.998356
11366	dm3.chr3R	20,671,685 – 20,671,795	- - - intron="intron;ID=intron_FBgn0013953:1_FBgn0013953:3;Name=Esp-in;Parent=FBtr0304054;parent_type=mRNA" - - - -	15625	20,671,685 – 20,671,795	+	5	110	77.93	-1.82	0.60	0.689676
11367	dm3.chr3R	20,687,100 – 20,687,191	- - - - - - - -	15626	20,687,100 – 20,687,191	-	6	101	72.71	-1.75	0.41	0.577811
11368	dm3.chr3R	20,701,151 – 20,701,251	- - CDS="CDS;ID=CDS_CG3744:2_90;Name=CG3744-cds;Parent=FBtr0084727,FBtr0084725;parent_type=mRNA" - - - - -	15627	20,701,151 – 20,701,251	+	11	107	67.84	-1.79	0.31	0.823917
11368	dm3.chr3R	20,701,151 – 20,701,251		15628	20,701,151 – 20,701,251	-	11	107	67.84	-2.35	0.29	0.959050
11369	dm3.chr3R	20,703,340 – 20,703,457	- - CDS="CDS;ID=CDS_FBgn0043799:5_229;Name=CG31381-cds;Parent=FBtr0303482;parent_type=mRNA" - - - - -	15629	20,703,340 – 20,703,457	+	13	120	66.35	-0.95	0.38	0.602311
11370	dm3.chr3R	20,705,883 – 20,705,997	- - CDS="CDS;ID=CDS_FBgn0039241:7_64;Name=CG11089-cds;Parent=FBtr0084710;parent_type=mRNA" - - - - -	15630	20,705,883 – 20,705,997	-	14	115	68.95	-0.89	0.40	0.562356
11371	dm3.chr3R	20,707,395 – 20,707,515	- - CDS="CDS;ID=CDS_CG31121:8_53;Name=CG31121-cds;Parent=FBtr0084723,FBtr0084724;parent_type=mRNA" - - - - -	15631	20,707,395 – 20,707,515	-	14	120	75.58	-1.77	0.40	0.837915
11372	dm3.chr3R	20,715,412 – 20,715,517	- - - intron="intron;ID=intron_CG31121:9_CG31121:2;Name=CG31121-in;Parent=FBtr0084724;parent_type=mRNA" - - - -	15632	20,715,412 – 20,715,517	+	7	119	72.04	-0.86	0.58	0.506341
11373	dm3.chr3R	20,725,770 – 20,725,880	- - CDS="CDS;ID=CDS_CG13643:5_46;Name=CG13643-cds;Parent=FBtr0084722;parent_type=mRNA" - - - - -	15633	20,725,770 – 20,725,880	-	7	118	74.84	-1.75	0.49	0.833117
11374	dm3.chr3R	20,737,967 – 20,738,065	- - - - - - - -	15634	20,737,967 – 20,738,065	-	9	100	75.25	-1.61	0.52	0.799227
11375	dm3.chr3R	20,740,555 – 20,740,635	FBnoncoding="tRNA;ID=FBtr0084714;Name=tRNA:CR31382-RA;Parent=FBgn0051382;Alias=CR31382-RA;Dbxref=FlyBase_Annotation_IDs:CR31382-RA;score_text=Weakly" tRNAscann="Asp_chr3R_trna37" - intron="intron;ID=intron_FBgn0051120:4_FBgn0051120:3;Name=CG31120-in;Parent=FBtr0089440;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010887279.1/1267-1338\|5.0e-27" "Noncode_2.0=n112842_u111940_DQ604839_piRNA_Norway\|6.2e-08" "unique_Noncode_2.0=u111940_piRNA_Norway\|5.4e-08" -	15635	20,740,555 – 20,740,635	+	12	84	91.01	-1.32	0.98	0.915654
11375	dm3.chr3R	20,740,555 – 20,740,635		15636	20,740,555 – 20,740,635	-	12	84	91.01	-0.87	0.94	0.557089
11376	dm3.chr3R	20,744,268 – 20,744,349	- - - intron="intron;ID=intron_FBgn0039249:1_FBgn0039249:2;Name=CG11168-in;Parent=FBtr0084715,FBtr0306089;parent_type=mRNA" - - - -	15637	20,744,268 – 20,744,349	-	7	81	73.02	-1.43	0.49	0.531173
11377	dm3.chr3R	20,747,186 – 20,747,285	- - CDS="CDS;ID=CDS_FBgn0039249:7_206;Name=CG11168-cds;Parent=FBtr0084715;parent_type=mRNA" - - - - -	15638	20,747,186 – 20,747,285	+	11	112	68.91	-1.56	0.37	0.702378
11377	dm3.chr3R	20,747,186 – 20,747,285		15639	20,747,186 – 20,747,285	-	11	112	68.91	-1.35	0.44	0.822769
11378	dm3.chr3R	20,748,361 – 20,748,412	- - CDS="CDS;ID=CDS_FBgn0039250:2_206;Name=CG11120-cds;Parent=FBtr0084716;parent_type=mRNA" - - - - -	15640	20,748,361 – 20,748,412	+	6	51	79.87	-1.51	0.93	0.969687
11379	dm3.chr3R	20,774,387 – 20,774,495	- - - intron="intron;ID=intron_CG13646:3_CG13646:4;Name=CG13646-in;Parent=FBtr0084751;parent_type=mRNA" - - - -	15641	20,774,387 – 20,774,495	-	13	114	59.85	-0.69	0.34	0.551186
11380	dm3.chr3R	20,776,069 – 20,776,159	- - - - - - - -	15642	20,776,069 – 20,776,159	-	8	96	77.30	-2.12	0.43	0.656949
11381	dm3.chr3R	20,779,234 – 20,779,363	- - - - - - - -	15643	20,779,234 – 20,779,328	+	5	94	84.87	-1.46	0.79	0.642487
				15644	20,779,234 – 20,779,328	-	5	94	84.87	-1.52	0.78	0.657880
				15645	20,779,269 – 20,779,363	-	5	94	89.89	-1.59	0.82	0.598760
11382	dm3.chr3R	20,780,202 – 20,780,299	- - - - - - - -	15646	20,780,202 – 20,780,299	+	5	97	95.05	-1.34	0.91	0.552071
11383	dm3.chr3R	20,787,576 – 20,787,714	- - - - - - - -	15647	20,787,576 – 20,787,714	+	5	145	95.86	-1.63	0.90	0.701064
11384	dm3.chr3R	20,788,333 – 20,788,429	- - - - - - - -	15648	20,788,333 – 20,788,429	-	4	96	70.49	-1.42	0.50	0.546028
11385	dm3.chr3R	20,797,663 – 20,797,767	- - - - - - - -	15649	20,797,663 – 20,797,767	-	5	110	87.31	-1.21	0.93	0.807759
11386	dm3.chr3R	20,802,094 – 20,802,214	- - - - - - - -	15650	20,802,094 – 20,802,214	-	5	120	86.75	-1.79	0.92	0.957028
11387	dm3.chr3R	20,805,995 – 20,806,045	- - - - - - - -	15651	20,805,995 – 20,806,045	+	4	50	93.00	-1.98	0.93	0.944444
11388	dm3.chr3R	20,807,463 – 20,807,586	- - - - - - - -	15652	20,807,463 – 20,807,553	-	5	97	90.49	-1.92	0.86	0.871607
11388	dm3.chr3R	20,807,463 – 20,807,586	- - - - - - - -	15653	20,807,480 – 20,807,586	-	5	113	95.13	-3.39	0.98	0.997984
11389	dm3.chr3R	20,807,923 – 20,808,034	- - - - - - - -	15654	20,807,923 – 20,808,034	+	3	111	73.52	-0.64	0.95	0.715712
11390	dm3.chr3R	20,809,822 – 20,809,894	- - - - - - - -	15655	20,809,822 – 20,809,894	+	6	73	73.76	-2.28	0.46	0.946478
11391	dm3.chr3R	20,812,700 – 20,812,779	- - - intron="intron;ID=intron_FBgn0039257:3_FBgn0039257:4;Name=tnc-in;Parent=FBtr0305668;parent_type=mRNA" - - - -	15656	20,812,700 – 20,812,779	+	6	94	81.83	-2.15	0.77	0.965773
11391	dm3.chr3R	20,812,700 – 20,812,779		15657	20,812,700 – 20,812,779	-	6	94	81.83	-2.94	0.66	0.990806
11392	dm3.chr3R	20,812,954 – 20,813,008	- - - intron="intron;ID=intron_FBgn0039257:3_FBgn0039257:4;Name=tnc-in;Parent=FBtr0305668;parent_type=mRNA" - - - -	15658	20,812,954 – 20,813,008	+	4	56	69.39	-1.23	0.52	0.514072
11393	dm3.chr3R	20,813,147 – 20,813,249	- - - intron="intron;ID=intron_FBgn0039257:3_FBgn0039257:4;Name=tnc-in;Parent=FBtr0305668;parent_type=mRNA" - - - -	15659	20,813,147 – 20,813,249	-	12	115	68.23	-1.49	0.34	0.551539
11394	dm3.chr3R	20,814,779 – 20,814,876	- - - intron="intron;ID=intron_FBgn0039257:3_FBgn0039257:4;Name=tnc-in;Parent=FBtr0305668;parent_type=mRNA" - - - -	15660	20,814,779 – 20,814,876	-	6	103	77.29	-1.64	0.58	0.782484
11395	dm3.chr3R	20,818,774 – 20,818,837	- - - intron="intron;ID=intron_FBgn0039257:3_FBgn0039257:4;Name=tnc-in;Parent=FBtr0305668;parent_type=mRNA" - - - -	15661	20,818,774 – 20,818,837	-	4	63	85.71	-3.22	0.71	0.991600
11396	dm3.chr3R	20,824,924 – 20,825,030	- - - intron="intron;ID=intron_FBgn0039257:3_FBgn0039257:4;Name=tnc-in;Parent=FBtr0305668;parent_type=mRNA" - - - -	15662	20,824,924 – 20,825,030	+	4	106	85.26	-1.91	0.73	0.715594
11396	dm3.chr3R	20,824,924 – 20,825,030		15663	20,824,924 – 20,825,030	-	4	106	85.26	-2.36	0.73	0.923598
11397	dm3.chr3R	20,830,108 – 20,830,206	- - - intron="intron;ID=intron_FBgn0039257:4_FBgn0039257:5;Name=tnc-in;Parent=FBtr0305667,FBtr0305668;parent_type=mRNA" - - - -	15664	20,830,108 – 20,830,206	-	11	116	77.68	-1.93	0.50	0.781796
11398	dm3.chr3R	20,830,417 – 20,830,513	- - - intron="intron;ID=intron_FBgn0039257:4_FBgn0039257:5;Name=tnc-in;Parent=FBtr0305667,FBtr0305668;parent_type=mRNA" - - - -	15665	20,830,417 – 20,830,513	+	8	113	61.95	-1.21	0.43	0.878858
11399	dm3.chr3R	20,835,928 – 20,836,050	- - - intron="intron;ID=intron_FBgn0039257:4_FBgn0039257:5;Name=tnc-in;Parent=FBtr0305667,FBtr0305668;parent_type=mRNA" - - - -	15666	20,835,928 – 20,836,050	+	5	135	71.64	-1.73	0.65	0.980678
11399	dm3.chr3R	20,835,928 – 20,836,050		15667	20,835,928 – 20,836,050	-	5	135	71.64	-2.17	0.53	0.982963
11400	dm3.chr3R	20,836,747 – 20,836,861	- - - intron="intron;ID=intron_FBgn0039257:4_FBgn0039257:5;Name=tnc-in;Parent=FBtr0305667,FBtr0305668;parent_type=mRNA" - - - -	15668	20,836,747 – 20,836,861	-	7	114	84.01	-1.48	0.74	0.615385
11401	dm3.chr3R	20,862,791 – 20,862,910	- - CDS="CDS;ID=CDS_FBgn0051115:1_151;Name=CG31115-cds;Parent=FBtr0290053;parent_type=mRNA" intron="intron;ID=intron_FBgn0039261:6_FBgn0039261:5;Name=CG6422-in;Parent=FBtr0084794,FBtr0084795,FBtr0113281;parent_type=mRNA" - - - -	15669	20,862,791 – 20,862,910	-	14	120	67.29	-1.39	0.30	0.573470
11402	dm3.chr3R	20,870,545 – 20,870,619	- - - intron="intron;ID=intron_FBgn0259178:11_FBgn0259178:9;Name=5PtaseI-in;Parent=FBtr0299660,FBtr0299662;parent_type=mRNA" - - - -	15670	20,870,545 – 20,870,619	+	6	77	85.33	-1.78	0.68	0.594347
11402	dm3.chr3R	20,870,545 – 20,870,619		15671	20,870,545 – 20,870,619	-	6	77	85.33	-1.98	0.83	0.950747
11403	dm3.chr3R	20,873,278 – 20,873,474	- - - - - - - -	15672	20,873,278 – 20,873,372	+	3	118	66.10	-1.80	0.53	0.906169
				15673	20,873,299 – 20,873,412	+	5	118	83.26	-2.77	0.63	0.975014
				15674	20,873,299 – 20,873,412	-	5	118	83.26	-2.20	0.66	0.892892
				15675	20,873,372 – 20,873,473	-	5	101	89.50	-2.36	0.75	0.894159
				15676	20,873,373 – 20,873,474	+	5	101	89.50	-2.20	0.69	0.663569
				15677	20,873,373 – 20,873,474	-	5	101	89.50	-2.76	0.76	0.970258
11404	dm3.chr3R	20,875,397 – 20,875,591	- - - - - - - -	15678	20,875,397 – 20,875,517	+	5	120	97.83	-2.05	0.97	0.959768
				15679	20,875,397 – 20,875,517	-	5	120	97.83	-1.25	0.94	0.539070
				15680	20,875,437 – 20,875,554	+	5	117	96.92	-1.71	0.97	0.916907
				15681	20,875,477 – 20,875,591	+	5	117	88.78	-1.87	0.78	0.711377
11405	dm3.chr3R	20,877,599 – 20,877,717	- - - intron="intron;ID=intron_FBgn0039266:4_FBgn0039266:6;Name=CG11791-in;Parent=FBtr0084762,FBtr0113283;parent_type=mRNA" - - - -	15682	20,877,599 – 20,877,717	+	6	120	84.30	-1.59	0.68	0.512780
11406	dm3.chr3R	20,883,223 – 20,883,277	- - - intron="intron;ID=intron_FBgn0085378:1_FBgn0085378:2;Name=CG34349-in;Parent=FBtr0303025;parent_type=mRNA" - - - -	15683	20,883,223 – 20,883,277	+	5	67	53.34	-0.56	0.46	0.687711
11407	dm3.chr3R	20,902,778 – 20,902,896	- - - - - - - -	15684	20,902,778 – 20,902,896	+	7	120	93.37	-1.15	0.92	0.558348
11408	dm3.chr3R	20,906,314 – 20,906,407	- - - - - - - -	15685	20,906,314 – 20,906,407	-	8	115	58.70	-1.54	0.30	0.647641
11409	dm3.chr3R	20,915,810 – 20,915,918	- - - - - - - -	15686	20,915,810 – 20,915,918	+	6	120	92.86	-3.50	0.92	0.997701
11409	dm3.chr3R	20,915,810 – 20,915,918	- - - - - - - -	15687	20,915,810 – 20,915,918	-	6	120	92.86	-2.94	0.85	0.987106
11410	dm3.chr3R	20,919,958 – 20,920,050	- - - - - - - -	15688	20,919,958 – 20,920,050	-	7	112	67.73	-2.32	0.40	0.976013
11411	dm3.chr3R	20,922,219 – 20,922,321	- - - - - - - -	15689	20,922,219 – 20,922,321	+	3	102	74.16	-1.18	0.76	0.622452
11411	dm3.chr3R	20,922,219 – 20,922,321	- - - - - - - -	15690	20,922,219 – 20,922,321	-	3	102	74.16	-1.46	0.79	0.863458
11412	dm3.chr3R	20,925,682 – 20,925,830	- - - - - - - -	15691	20,925,682 – 20,925,796	+	10	120	65.02	-1.65	0.28	0.686322
				15692	20,925,682 – 20,925,796	-	10	120	65.02	-2.35	0.27	0.961573
				15693	20,925,722 – 20,925,830	+	10	118	59.30	-1.36	0.32	0.852875
				15694	20,925,722 – 20,925,830	-	10	118	59.30	-1.53	0.26	0.713609
11413	dm3.chr3R	20,930,236 – 20,930,352	- - CDS="CDS;ID=CDS_FBgn0054027:4_91;Name=CG34027-cds;Parent=FBtr0100082;parent_type=mRNA" - - - - -	15695	20,930,236 – 20,930,352	-	8	119	68.35	-2.02	0.39	0.962535
11414	dm3.chr3R	20,932,406 – 20,932,508	- - CDS="CDS;ID=CDS_FBgn0054027:9_91;Name=CG34027-cds;Parent=FBtr0100082;parent_type=mRNA" - - - - -	15696	20,932,406 – 20,932,508	+	6	105	69.75	-1.46	0.41	0.616858
11415	dm3.chr3R	20,938,353 – 20,938,456	- - - - - - - -	15697	20,938,353 – 20,938,456	+	5	103	82.33	-1.72	0.67	0.630199
11416	dm3.chr3R	20,947,770 – 20,947,881	- - - intron="intron;ID=intron_CG31510:1_CG31510:2;Name=CG31510-in;Parent=FBtr0084783;parent_type=mRNA" - - - -	15698	20,947,770 – 20,947,881	-	6	115	80.21	-1.22	0.70	0.587534
11417	dm3.chr3R	20,966,634 – 20,966,724	- - - - - - - -	15699	20,966,634 – 20,966,724	-	5	111	85.20	-1.00	0.88	0.512453
11418	dm3.chr3R	20,970,832 – 20,970,940	- - - - - - - -	15700	20,970,832 – 20,970,940	+	6	116	77.29	-1.46	0.59	0.712988
11419	dm3.chr3R	20,974,967 – 20,975,057	- - - - - - - -	15701	20,974,967 – 20,975,057	-	5	90	60.00	-1.48	0.29	0.558967
11420	dm3.chr3R	20,982,482 – 20,982,622	- - - - - - - -	15702	20,982,482 – 20,982,587	+	12	115	72.05	-2.59	0.42	0.986898
11420	dm3.chr3R	20,982,482 – 20,982,622	- - - - - - - -	15703	20,982,512 – 20,982,622	+	4	120	82.61	-3.70	0.52	0.991292
11421	dm3.chr3R	20,988,685 – 20,988,777	- - - - - - - -	15704	20,988,685 – 20,988,777	-	4	93	66.79	-1.60	0.45	0.719360
11422	dm3.chr3R	20,993,685 – 20,993,799	- - - - - - - -	15705	20,993,685 – 20,993,799	-	12	120	90.96	-2.44	0.89	0.983243
11423	dm3.chr3R	21,000,316 – 21,000,408	- - - intron="intron;ID=intron_FBgn0083946:8_FBgn0083946:7;Name=CG34110-in;Parent=FBtr0110797;parent_type=mRNA" - - - -	15706	21,000,316 – 21,000,408	-	10	117	78.57	-2.05	0.62	0.945589
11424	dm3.chr3R	21,005,307 – 21,005,400	- - - intron="intron;ID=intron_FBgn0083946:8_FBgn0083946:7;Name=CG34110-in;Parent=FBtr0110797;parent_type=mRNA" - - - -	15707	21,005,307 – 21,005,400	-	7	93	65.26	-1.28	0.41	0.640287
11425	dm3.chr3R	21,008,164 – 21,008,251	- - - intron="intron;ID=intron_FBgn0083946:8_FBgn0083946:7;Name=CG34110-in;Parent=FBtr0110797;parent_type=mRNA" - - - -	15708	21,008,164 – 21,008,251	+	6	98	77.52	-1.73	0.76	0.958851
11426	dm3.chr3R	21,012,915 – 21,013,010	- - - intron="intron;ID=intron_FBgn0039286:1_FBgn0039286:2;Name=dan-in;Parent=FBtr0084803;parent_type=mRNA" - - - -	15709	21,012,915 – 21,013,010	+	6	110	65.01	-0.96	0.58	0.910110
11426	dm3.chr3R	21,012,915 – 21,013,010		15710	21,012,915 – 21,013,010	-	6	110	65.01	-0.50	0.59	0.664718
11427	dm3.chr3R	21,017,671 – 21,017,769	- - - - - - - -	15711	21,017,671 – 21,017,769	+	8	114	65.42	-0.92	0.48	0.838032
11428	dm3.chr3R	21,026,169 – 21,026,277	- - - intron="intron;ID=intron_FBgn0039290:1_FBgn0039290:2;Name=CG13654-in;Parent=FBtr0084805;parent_type=mRNA" - - - -	15712	21,026,169 – 21,026,277	-	5	109	62.01	-2.13	0.28	0.843050
11429	dm3.chr3R	21,027,537 – 21,027,627	- - - intron="intron;ID=intron_CG10244:5_CG10244:6;Name=Cad96Ca-in;Parent=FBtr0084874;parent_type=mRNA" - - - -	15713	21,027,537 – 21,027,627	+	5	96	72.50	-1.45	0.67	0.926721
11430	dm3.chr3R	21,031,179 – 21,031,335	- - - intron="intron;ID=intron_CG10244:2_CG10244:3;Name=Cad96Ca-in;Parent=FBtr0084874;parent_type=mRNA" - - - -	15714	21,031,179 – 21,031,295	-	6	120	87.87	-1.70	0.79	0.727025
11430	dm3.chr3R	21,031,179 – 21,031,335		15715	21,031,218 – 21,031,335	+	6	120	88.28	-1.96	0.80	0.872380
11431	dm3.chr3R	21,035,655 – 21,035,748	- - - - - - - -	15716	21,035,655 – 21,035,748	+	6	120	80.81	-1.75	0.66	0.692479
11432	dm3.chr3R	21,049,551 – 21,049,656	- - - - - - - -	15717	21,049,551 – 21,049,656	+	6	106	74.72	-2.50	0.36	0.882529
11433	dm3.chr3R	21,058,865 – 21,058,964	- - - - - - - -	15718	21,058,865 – 21,058,964	+	8	119	68.85	-1.40	0.50	0.898518
11434	dm3.chr3R	21,064,795 – 21,064,850	- - - - - - - -	15719	21,064,795 – 21,064,850	+	5	59	66.26	-1.75	0.61	0.987329
11435	dm3.chr3R	21,118,508 – 21,118,609	- - CDS="CDS;ID=CDS_FBgn0051098:3_151;Name=CG31098-cds;Parent=FBtr0084863;parent_type=mRNA" - - - - -	15720	21,118,508 – 21,118,609	+	12	117	76.16	-2.09	0.47	0.937796
11436	dm3.chr3R	21,146,261 – 21,146,322	- - - - - - - -	15721	21,146,261 – 21,146,322	+	3	61	54.10	-0.23	0.64	0.765448
11437	dm3.chr3R	21,166,905 – 21,166,998	- - - intron="intron;ID=intron_FBgn0027376:3_FBgn0027376:4;Name=rha-in;Parent=FBtr0084832;parent_type=mRNA" - - - -	15722	21,166,905 – 21,166,998	+	9	95	61.94	-0.09	0.66	0.938931
11438	dm3.chr3R	21,181,709 – 21,181,811	- - CDS="CDS;ID=CDS_CG10772:13_56;Name=Fur1-cds;Parent=FBtr0089983;parent_type=mRNA" - - - - -	15723	21,181,709 – 21,181,811	-	12	120	71.50	-1.47	0.50	0.922176
11439	dm3.chr3R	21,194,687 – 21,194,741	- - - - - - - -	15724	21,194,687 – 21,194,741	-	4	54	95.99	-2.07	0.97	0.968464
11440	dm3.chr3R	21,214,093 – 21,214,241	- - - - - - - -	15725	21,214,093 – 21,214,241	-	6	149	84.29	-1.91	0.64	0.680956
11441	dm3.chr3R	21,222,673 – 21,222,793	- - CDS="CDS;ID=CDS_CG10772:4_56;Name=Fur1-cds;Parent=FBtr0089987,FBtr0089985,FBtr0089986,FBtr0089983,FBtr0089984,FBtr0089982;parent_type=mRNA" - - - - -	15726	21,222,673 – 21,222,793	+	5	120	86.17	-1.96	0.76	0.855267
11442	dm3.chr3R	21,232,873 – 21,232,964	- - - - - - - -	15727	21,232,873 – 21,232,964	-	5	101	88.22	-1.52	0.94	0.911979
11443	dm3.chr3R	21,237,105 – 21,237,163	- - - - - - - -	15728	21,237,105 – 21,237,163	-	7	59	75.80	-1.07	0.55	0.511075
11444	dm3.chr3R	21,237,973 – 21,238,071	- - - - - - - -	15729	21,237,973 – 21,238,071	+	10	108	65.40	-1.28	0.39	0.829656
11445	dm3.chr3R	21,244,905 – 21,245,019	- - - intron="intron;ID=intron_CG10772:2_CG10772:3;Name=Fur1-in;Parent=FBtr0089987,FBtr0089986,FBtr0089983,FBtr0089984,FBtr0089982;parent_type=mRNA" - - - -	15730	21,244,905 – 21,245,019	+	6	120	78.94	-1.92	0.54	0.779751
11445	dm3.chr3R	21,244,905 – 21,245,019		15731	21,244,905 – 21,245,019	-	6	120	78.94	-1.49	0.58	0.546557
11446	dm3.chr3R	21,251,476 – 21,251,569	- - - intron="intron;ID=intron_CG10772:2_CG10772:3;Name=Fur1-in;Parent=FBtr0089987,FBtr0089986,FBtr0089983,FBtr0089984,FBtr0089982;parent_type=mRNA" - - - -	15732	21,251,476 – 21,251,569	+	6	93	93.91	-2.17	0.86	0.907811
11447	dm3.chr3R	21,252,994 – 21,253,243	- - - intron="intron;ID=intron_CG10772:2_CG10772:3;Name=Fur1-in;Parent=FBtr0089987,FBtr0089986,FBtr0089983,FBtr0089984,FBtr0089982;parent_type=mRNA" - - - -	15733	21,252,994 – 21,253,104	+	6	112	94.04	-2.45	0.79	0.874483
				15734	21,253,033 – 21,253,130	+	6	102	89.49	-2.31	0.83	0.955508
				15735	21,253,033 – 21,253,133	+	6	105	89.47	-2.23	0.83	0.944192
				15736	21,253,133 – 21,253,243	+	6	111	86.94	-1.50	0.82	0.723550
11448	dm3.chr3R	21,260,203 – 21,260,283	- - - intron="intron;ID=intron_CG10772:16_CG10772:2;Name=Fur1-in;Parent=FBtr0089987;parent_type=mRNA" - - - -	15737	21,260,203 – 21,260,283	+	3	80	96.67	-1.65	0.96	0.875393
11448	dm3.chr3R	21,260,203 – 21,260,283		15738	21,260,203 – 21,260,283	-	3	80	96.67	-3.66	1.01	0.998573
11449	dm3.chr3R	21,270,911 – 21,270,966	- - - intron="intron;ID=intron_CG10772:16_CG10772:2;Name=Fur1-in;Parent=FBtr0089987;parent_type=mRNA" - - - -	15739	21,270,911 – 21,270,966	-	7	55	68.43	-0.93	0.54	0.879889
11450	dm3.chr3R	21,276,764 – 21,276,828	- - - intron="intron;ID=intron_CG10772:16_CG10772:2;Name=Fur1-in;Parent=FBtr0089987;parent_type=mRNA" - - - -	15740	21,276,764 – 21,276,828	+	6	64	80.10	-2.06	0.58	0.910208
11450	dm3.chr3R	21,276,764 – 21,276,828		15741	21,276,764 – 21,276,828	-	6	64	80.10	-2.00	0.52	0.770768
11451	dm3.chr3R	21,278,650 – 21,278,746	- - - intron="intron;ID=intron_CG10772:16_CG10772:2;Name=Fur1-in;Parent=FBtr0089987;parent_type=mRNA" - - - -	15742	21,278,650 – 21,278,746	+	6	96	76.88	-2.04	0.68	0.983892
11451	dm3.chr3R	21,278,650 – 21,278,746		15743	21,278,650 – 21,278,746	-	6	96	76.88	-1.53	0.79	0.964224
11452	dm3.chr3R	21,290,624 – 21,290,726	- - - intron="intron;ID=intron_CG10772:1_CG10772:16;Name=Fur1-in;Parent=FBtr0089987;parent_type=mRNA" - - - -	15744	21,290,624 – 21,290,726	-	5	113	87.26	-2.32	0.78	0.946333
11453	dm3.chr3R	21,297,196 – 21,297,289	- - - intron="intron;ID=intron_CG10772:1_CG10772:16;Name=Fur1-in;Parent=FBtr0089987;parent_type=mRNA" - - - -	15745	21,297,196 – 21,297,289	-	3	108	83.95	-2.53	0.60	0.748421
11454	dm3.chr3R	21,316,569 – 21,316,682	- - - - - - - -	15746	21,316,569 – 21,316,682	+	6	113	74.34	-0.68	0.67	0.575764
11455	dm3.chr3R	21,345,372 – 21,345,480	- - CDS="CDS;ID=CDS_FBgn0011666:3_253;Name=msi-cds;Parent=FBtr0084881,FBtr0305219;parent_type=mRNA" - - - - -	15747	21,345,372 – 21,345,480	-	12	112	74.09	-0.79	0.60	0.723573
11456	dm3.chr3R	21,347,460 – 21,347,572	- - - intron="intron;ID=intron_FBgn0011666:3_FBgn0011666:4;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15748	21,347,460 – 21,347,572	+	11	124	70.32	-1.66	0.52	0.978158
11457	dm3.chr3R	21,348,339 – 21,348,442	- - - intron="intron;ID=intron_FBgn0011666:3_FBgn0011666:4;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15749	21,348,339 – 21,348,442	+	6	104	74.39	-1.28	0.54	0.553309
11458	dm3.chr3R	21,362,556 – 21,362,693	- - - intron="intron;ID=intron_FBgn0011666:3_FBgn0011666:4;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15750	21,362,556 – 21,362,653	+	10	111	74.51	-2.00	0.38	0.641449
11458	dm3.chr3R	21,362,556 – 21,362,693		15751	21,362,589 – 21,362,693	-	6	108	74.93	-1.16	0.65	0.749004
11459	dm3.chr3R	21,366,662 – 21,366,755	- - - intron="intron;ID=intron_FBgn0011666:3_FBgn0011666:4;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15752	21,366,662 – 21,366,755	-	5	93	85.59	-1.91	0.72	0.725448
11460	dm3.chr3R	21,375,400 – 21,375,451	- - - intron="intron;ID=intron_FBgn0011666:3_FBgn0011666:4;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15753	21,375,400 – 21,375,451	-	4	51	87.91	-1.94	0.81	0.836161
11461	dm3.chr3R	21,378,586 – 21,378,687	- - - intron="intron;ID=intron_FBgn0011666:3_FBgn0011666:4;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15754	21,378,586 – 21,378,687	-	7	113	71.33	-2.39	0.32	0.846916
11462	dm3.chr3R	21,381,357 – 21,381,452	- - - intron="intron;ID=intron_FBgn0011666:3_FBgn0011666:4;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15755	21,381,357 – 21,381,452	+	8	103	73.99	-1.93	0.38	0.594731
11463	dm3.chr3R	21,381,576 – 21,381,707	- - - intron="intron;ID=intron_FBgn0011666:3_FBgn0011666:4;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15756	21,381,576 – 21,381,707	-	7	145	59.88	-0.15	0.66	0.895469
11464	dm3.chr3R	21,386,290 – 21,386,385	- - - intron="intron;ID=intron_FBgn0011666:3_FBgn0011666:4;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15757	21,386,290 – 21,386,385	+	7	103	66.49	-1.14	0.45	0.757895
11465	dm3.chr3R	21,392,788 – 21,392,885	- - - intron="intron;ID=intron_FBgn0011666:4_FBgn0011666:5;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15758	21,392,788 – 21,392,885	-	7	98	83.60	-2.36	0.63	0.945613
11466	dm3.chr3R	21,396,986 – 21,397,082	- - - intron="intron;ID=intron_FBgn0011666:4_FBgn0011666:5;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15759	21,396,986 – 21,397,082	+	8	112	70.94	-2.03	0.38	0.790828
11466	dm3.chr3R	21,396,986 – 21,397,082		15760	21,396,986 – 21,397,082	-	8	112	70.94	-1.72	0.45	0.821733
11467	dm3.chr3R	21,397,748 – 21,397,859	- - - intron="intron;ID=intron_FBgn0011666:4_FBgn0011666:5;Name=msi-in;Parent=FBtr0084881,FBtr0305218;parent_type=mRNA" - - - -	15761	21,397,748 – 21,397,859	+	8	120	80.63	-2.34	0.49	0.814950
11468	dm3.chr3R	21,413,246 – 21,413,353	- - - - - - - -	15762	21,413,246 – 21,413,353	-	12	119	77.16	-0.77	0.83	0.800050
11469	dm3.chr3R	21,414,595 – 21,414,677	FBnoncoding="pre_miRNA;ID=FBtr0304485;Name=mir-1000-RM;Parent=FBgn0262319;Alias=CR43026-RM;Dbxref=FlyBase_Annotation_IDs:CR43026-RM,miRBase:MI0005862" - - - - - - "mirBase_v16=dme-mir-1000\|7.4e-42"	15763	21,414,595 – 21,414,677	+	15	84	78.41	-1.15	0.71	0.903269
11469	dm3.chr3R	21,414,595 – 21,414,677		15764	21,414,595 – 21,414,677	-	15	84	78.41	-3.58	0.81	0.999610
11470	dm3.chr3R	21,416,930 – 21,417,032	- - - - - - - -	15765	21,416,930 – 21,417,032	+	7	107	70.16	-0.85	0.51	0.613321
11471	dm3.chr3R	21,417,386 – 21,417,476	- - - - - - - -	15766	21,417,386 – 21,417,476	-	5	90	85.12	-1.85	0.66	0.526619
11472	dm3.chr3R	21,429,890 – 21,429,962	- - - - - - - -	15767	21,429,890 – 21,429,962	-	7	74	78.22	-1.46	0.56	0.619993
11473	dm3.chr3R	21,435,985 – 21,436,042	- - - - - - - -	15768	21,435,985 – 21,436,042	-	4	57	55.13	-0.97	0.40	0.666393
11474	dm3.chr3R	21,437,785 – 21,437,914	- - - intron="intron;ID=intron_FBgn0039348:4_FBgn0039348:3;Name=CG4673-in;Parent=FBtr0084892,FBtr0084893,FBtr0300729,FBtr0300730;parent_type=mRNA" - - - -	15769	21,437,785 – 21,437,914	+	4	133	71.18	-0.86	0.71	0.600626
11475	dm3.chr3R	21,453,133 – 21,453,223	- - - - - - - -	15770	21,453,133 – 21,453,223	-	9	111	72.26	-2.06	0.47	0.936991
11476	dm3.chr3R	21,454,826 – 21,454,942	- - - - - - - -	15771	21,454,826 – 21,454,942	-	8	135	67.59	-1.26	0.40	0.522415
11477	dm3.chr3R	21,469,781 – 21,469,843	- - - intron="intron;ID=intron_FBgn0039350:4_FBgn0039350:5;Name=jigr1-in;Parent=FBtr0084889;parent_type=mRNA" - - - -	15772	21,469,781 – 21,469,843	+	4	62	95.16	-2.20	0.86	0.874150
11477	dm3.chr3R	21,469,781 – 21,469,843		15773	21,469,781 – 21,469,843	-	4	62	95.16	-1.98	0.86	0.775569
11478	dm3.chr3R	21,477,131 – 21,477,240	FBnoncoding="pre_miRNA;ID=FBtr0304252;Name=mir-92b-RM;Parent=FBgn0262388;Alias=CR42916-RM;Dbxref=FlyBase_Annotation_IDs:CR42916-RM,miRBase:MI0000379" - - - - - - "mirBase_v16=dme-mir-92b\|2.7e-45"	15774	21,477,131 – 21,477,240	+	11	109	81.09	-2.44	0.82	0.995153
11478	dm3.chr3R	21,477,131 – 21,477,240		15775	21,477,131 – 21,477,240	-	11	109	81.09	-1.84	0.59	0.816951
11479	dm3.chr3R	21,478,000 – 21,478,107	- - - - - - - -	15776	21,478,000 – 21,478,107	+	6	128	65.39	-0.82	0.50	0.680294
11480	dm3.chr3R	21,508,431 – 21,508,522	- - - intron="intron;ID=intron_FBgn0039358:6_FBgn0039358:9;Name=CG5028-in;Parent=FBtr0113289;parent_type=mRNA" - - - -	15777	21,508,431 – 21,508,522	-	5	93	86.21	-1.91	0.75	0.800662
11481	dm3.chr3R	21,510,081 – 21,510,251	- - CDS="CDS;ID=CDS_CG4759:2_71;Name=RpL27-cds;Parent=FBtr0084932;parent_type=mRNA" - - - - -	15778	21,510,081 – 21,510,201	-	15	120	82.46	-3.60	0.71	0.999411
				15779	21,510,121 – 21,510,240	-	15	120	79.90	-2.41	0.69	0.996517
				15780	21,510,157 – 21,510,251	+	14	113	73.96	-1.39	0.59	0.927476
				15781	21,510,157 – 21,510,251	-	14	113	73.96	-0.61	0.74	0.776934
11482	dm3.chr3R	21,510,646 – 21,510,796	- - - - - - - -	15782	21,510,646 – 21,510,766	+	5	120	93.17	-1.93	0.79	0.559327
11482	dm3.chr3R	21,510,646 – 21,510,796	- - - - - - - -	15783	21,510,676 – 21,510,796	+	5	120	94.83	-2.05	0.87	0.853869
11483	dm3.chr3R	21,517,297 – 21,517,349	- - - - - - - -	15784	21,517,297 – 21,517,349	+	7	65	64.94	-0.99	0.47	0.557296
11484	dm3.chr3R	21,535,816 – 21,535,885	- - CDS="CDS;ID=CDS_FBgn0051092:8_143;Name=LpR2-cds;Parent=FBtr0113384,FBtr0113386;parent_type=mRNA" - - - - -	15785	21,535,816 – 21,535,885	+	13	77	64.21	-1.38	0.28	0.547152
11485	dm3.chr3R	21,536,347 – 21,536,455	- - - intron="intron;ID=intron_FBgn0051092:10_FBgn0051092:8;Name=LpR2-in;Parent=FBtr0113384,FBtr0113386;parent_type=mRNA" - - - -	15786	21,536,347 – 21,536,455	-	9	120	90.61	-1.09	0.92	0.616672
11486	dm3.chr3R	21,537,677 – 21,537,770	- - - intron="intron;ID=intron_FBgn0051092:10_FBgn0051092:8;Name=LpR2-in;Parent=FBtr0113384,FBtr0113386;parent_type=mRNA" - - - -	15787	21,537,677 – 21,537,770	+	4	93	84.42	-2.64	0.73	0.971603
11487	dm3.chr3R	21,541,473 – 21,541,564	- - - intron="intron;ID=intron_FBgn0051092:11_FBgn0051092:10;Name=LpR2-in;Parent=FBtr0084928,FBtr0113387;parent_type=mRNA" - - - -	15788	21,541,473 – 21,541,564	-	11	102	66.74	-0.12	0.63	0.633369
11488	dm3.chr3R	21,551,010 – 21,551,119	- - - intron="intron;ID=intron_FBgn0051092:14_FBgn0051092:13;Name=LpR2-in;Parent=FBtr0084927,FBtr0113384,FBtr0113385,FBtr0113386,FBtr0113388;parent_type=mRNA" - - - -	15789	21,551,010 – 21,551,119	+	8	115	69.60	-1.89	0.34	0.698808
11489	dm3.chr3R	21,558,685 – 21,558,750	- - - intron="intron;ID=intron_FBgn0051092:14_FBgn0051092:13;Name=LpR2-in;Parent=FBtr0084927,FBtr0113384,FBtr0113385,FBtr0113386,FBtr0113388;parent_type=mRNA" - - - -	15790	21,558,685 – 21,558,750	+	5	65	63.85	-0.54	0.50	0.580739
11489	dm3.chr3R	21,558,685 – 21,558,750		15791	21,558,685 – 21,558,750	-	5	65	63.85	-0.99	0.40	0.518681
11490	dm3.chr3R	21,567,611 – 21,567,722	- - - - - - - -	15792	21,567,611 – 21,567,722	+	6	113	91.48	-1.52	0.89	0.770600
11491	dm3.chr3R	21,567,962 – 21,568,057	- - CDS="CDS;ID=CDS_FBgn0066101:2_185;Name=LpR1-cds;Parent=FBtr0301466,FBtr0301467,FBtr0301468,FBtr0301469,FBtr0301470,FBtr0301471;parent_type=mRNA" - - - - -	15793	21,567,962 – 21,568,057	-	12	99	75.66	-0.72	0.63	0.701716
11492	dm3.chr3R	21,569,516 – 21,569,626	- - - intron="intron;ID=intron_FBgn0066101:4_FBgn0066101:3;Name=LpR1-in;Parent=FBtr0301466,FBtr0301467,FBtr0301468,FBtr0301469,FBtr0301470;parent_type=mRNA" - - - -	15794	21,569,516 – 21,569,626	+	8	115	77.87	-1.60	0.52	0.563966
11493	dm3.chr3R	21,572,522 – 21,572,591	- - - intron="intron;ID=intron_FBgn0066101:7_FBgn0066101:6;Name=LpR1-in;Parent=FBtr0113480,FBtr0301466,FBtr0301467,FBtr0301468,FBtr0301469,FBtr0301470,FBtr0301471;parent_type=mRNA" - - - -	15795	21,572,522 – 21,572,591	+	12	78	77.26	-1.57	0.53	0.717029
11494	dm3.chr3R	21,574,258 – 21,574,361	- - - intron="intron;ID=intron_FBgn0066101:9_FBgn0066101:8;Name=LpR1-in;Parent=FBtr0301468,FBtr0301470;parent_type=mRNA" - - - -	15796	21,574,258 – 21,574,361	+	7	114	67.09	-1.05	0.47	0.522658
11495	dm3.chr3R	21,575,730 – 21,575,783	- - - intron="intron;ID=intron_FBgn0066101:11_FBgn0066101:10;Name=LpR1-in;Parent=FBtr0113480,FBtr0301466,FBtr0301468;parent_type=mRNA" - - - -	15797	21,575,730 – 21,575,783	-	9	53	82.55	-1.77	0.81	0.953177
11496	dm3.chr3R	21,579,518 – 21,579,613	- - - - - - - -	15798	21,579,518 – 21,579,613	-	11	110	66.15	-0.93	0.50	0.812166
11497	dm3.chr3R	21,587,328 – 21,587,391	- - - - - - - -	15799	21,587,328 – 21,587,391	+	7	69	81.89	-1.30	0.70	0.559081
11498	dm3.chr3R	21,587,566 – 21,587,686	- - - - - - - -	15800	21,587,566 – 21,587,673	-	5	107	67.49	-2.54	0.46	0.989320
11498	dm3.chr3R	21,587,566 – 21,587,686	- - - - - - - -	15801	21,587,579 – 21,587,686	-	6	120	66.55	-1.82	0.60	0.988359
11499	dm3.chr3R	21,587,725 – 21,587,820	- - - - - - - -	15802	21,587,725 – 21,587,820	+	12	116	68.50	-0.94	0.47	0.537706
11500	dm3.chr3R	21,589,353 – 21,589,449	- - - - - - - -	15803	21,589,353 – 21,589,449	+	9	111	64.23	-2.06	0.34	0.951287
11501	dm3.chr3R	21,613,596 – 21,613,690	- - - - - - - -	15804	21,613,596 – 21,613,690	+	5	97	73.40	-1.40	0.65	0.901915
11502	dm3.chr3R	21,622,484 – 21,622,579	- - - - - - - -	15805	21,622,484 – 21,622,579	-	11	113	77.09	-1.86	0.54	0.867586
11503	dm3.chr3R	21,647,274 – 21,647,350	- - - - - - - -	15806	21,647,274 – 21,647,350	+	9	77	66.25	-2.04	0.28	0.895392
11503	dm3.chr3R	21,647,274 – 21,647,350	- - - - - - - -	15807	21,647,274 – 21,647,350	-	9	77	66.25	-1.57	0.31	0.740541
11504	dm3.chr3R	21,669,736 – 21,669,835	- - - - - - - -	15808	21,669,736 – 21,669,835	-	10	108	72.96	-1.14	0.49	0.600670
11505	dm3.chr3R	21,676,640 – 21,676,749	- - - intron="intron;ID=intron_CG14545:1_CG14545:2;Name=CG14545-in;Parent=FBtr0084913;parent_type=mRNA" - - - -	15809	21,676,640 – 21,676,749	+	8	113	57.26	-0.43	0.40	0.596171
11506	dm3.chr3R	21,678,305 – 21,678,366	- - - intron="intron;ID=intron_CG5886:3_CG5886:4;Name=CG5886-in;Parent=FBtr0084907;parent_type=mRNA" - - - -	15810	21,678,305 – 21,678,366	-	4	61	91.80	-1.53	0.85	0.524280
11507	dm3.chr3R	21,686,967 – 21,687,066	- - - - - - - -	15811	21,686,967 – 21,687,066	+	11	109	76.75	-2.47	0.50	0.973487
11507	dm3.chr3R	21,686,967 – 21,687,066	- - - - - - - -	15812	21,686,967 – 21,687,066	-	11	109	76.75	-2.62	0.36	0.847577
11508	dm3.chr3R	21,690,792 – 21,690,850	- - - - - - - -	15813	21,690,792 – 21,690,850	-	7	63	76.44	-0.79	0.78	0.730935
11509	dm3.chr3R	21,691,869 – 21,691,977	- - - - - - - -	15814	21,691,869 – 21,691,977	+	6	109	78.51	-1.72	0.69	0.936335
11510	dm3.chr3R	21,692,534 – 21,692,614	- - - - - - - -	15815	21,692,534 – 21,692,614	-	4	80	67.29	-1.56	0.50	0.855542
11511	dm3.chr3R	21,704,753 – 21,704,853	- - - intron="intron;ID=intron_CG6120:1_CG6120:2;Name=Tsp96F-in;Parent=FBtr0084912;parent_type=mRNA" - - - -	15816	21,704,753 – 21,704,853	-	6	105	80.92	-2.20	0.55	0.854754
11512	dm3.chr3R	21,708,648 – 21,708,739	- - - intron="intron;ID=intron_FBgn0039381:2_FBgn0039381:4;Name=CG17370-in;Parent=FBtr0084911;parent_type=mRNA" - - - -	15817	21,708,648 – 21,708,739	+	4	97	72.65	-1.79	0.59	0.927486
11512	dm3.chr3R	21,708,648 – 21,708,739		15818	21,708,648 – 21,708,739	-	4	97	72.65	-1.62	0.61	0.898700
11513	dm3.chr3R	21,714,167 – 21,714,272	- - - - - - - -	15819	21,714,167 – 21,714,272	+	6	111	59.44	-1.88	0.24	0.767786
11513	dm3.chr3R	21,714,167 – 21,714,272	- - - - - - - -	15820	21,714,167 – 21,714,272	-	6	111	59.44	-1.52	0.26	0.563525
11514	dm3.chr3R	21,714,781 – 21,714,910	- - - intron="intron;ID=intron_CG17367:1_CG17367:2;Name=Lnk-in;Parent=FBtr0084935;parent_type=mRNA" - - - -	15821	21,714,781 – 21,714,910	+	5	131	73.79	-2.10	0.44	0.651466
11515	dm3.chr3R	21,728,515 – 21,728,569	- - CDS="CDS;ID=CDS_CG31089:1_40;Name=CG31089-cds;Parent=FBtr0084942;parent_type=mRNA" - - - - -	15822	21,728,515 – 21,728,569	+	12	61	68.04	-1.35	0.51	0.961589
11516	dm3.chr3R	21,740,831 – 21,740,922	- - CDS="CDS;ID=CDS_FBgn0250757:18_201;Name=CG42235-cds;Parent=FBtr0290137;parent_type=mRNA" - - - - -	15823	21,740,831 – 21,740,922	+	11	104	66.10	-0.66	0.46	0.585145
11517	dm3.chr3R	21,749,255 – 21,749,352	- - - - - - - -	15824	21,749,255 – 21,749,352	+	8	97	93.34	-2.08	0.76	0.620795
11518	dm3.chr3R	21,809,143 – 21,809,199	- - - intron="intron;ID=intron_FBgn0015269:1_FBgn0015269:2;Name=Nf1-in;Parent=FBtr0084952,FBtr0084953,FBtr0100113;parent_type=mRNA" - - - -	15825	21,809,143 – 21,809,199	+	5	56	95.89	-1.97	0.92	0.911998
11519	dm3.chr3R	21,834,196 – 21,834,288	- - - - - - - -	15826	21,834,196 – 21,834,288	-	8	120	85.55	-1.38	0.80	0.572133
11520	dm3.chr3R	21,835,612 – 21,835,703	- - - - - - - -	15827	21,835,612 – 21,835,703	-	7	113	74.28	-1.61	0.73	0.964536
11521	dm3.chr3R	21,838,452 – 21,838,559	- - - - - - - -	15828	21,838,452 – 21,838,559	-	9	119	73.89	-2.26	0.45	0.955452
11522	dm3.chr3R	21,843,133 – 21,843,290	- - - - - - - -	15829	21,843,133 – 21,843,235	-	11	112	82.73	-1.44	0.65	0.525931
11522	dm3.chr3R	21,843,133 – 21,843,290	- - - - - - - -	15830	21,843,196 – 21,843,290	-	11	120	85.11	-1.57	0.73	0.558506
11523	dm3.chr3R	21,844,431 – 21,844,521	- - - - - - - -	15831	21,844,431 – 21,844,521	-	5	96	89.83	-2.05	0.79	0.818547
11524	dm3.chr3R	21,846,252 – 21,846,343	- - - - - - - -	15832	21,846,252 – 21,846,343	+	10	114	73.13	-1.97	0.53	0.952824
11525	dm3.chr3R	21,846,393 – 21,846,541	- - - - - - - -	15833	21,846,393 – 21,846,503	+	9	120	94.81	-1.95	0.87	0.838646
				15834	21,846,393 – 21,846,503	-	9	120	94.81	-1.53	0.87	0.560721
				15835	21,846,423 – 21,846,541	+	8	119	93.12	-2.10	0.95	0.975039
				15836	21,846,423 – 21,846,541	-	8	119	93.12	-2.21	0.87	0.939042
11526	dm3.chr3R	21,846,859 – 21,846,921	- - - - - - - -	15837	21,846,859 – 21,846,921	+	5	62	98.71	-5.66	0.99	0.998020
11526	dm3.chr3R	21,846,859 – 21,846,921	- - - - - - - -	15838	21,846,859 – 21,846,921	-	5	62	98.71	-4.72	1.00	0.998777
11527	dm3.chr3R	21,854,697 – 21,854,835	- - - - - - - -	15839	21,854,697 – 21,854,803	-	6	109	82.12	-2.70	0.70	0.990961
11527	dm3.chr3R	21,854,697 – 21,854,835	- - - - - - - -	15840	21,854,743 – 21,854,835	-	3	96	69.37	-1.83	0.64	0.934600
11528	dm3.chr3R	21,856,294 – 21,856,401	- - - - - - - -	15841	21,856,294 – 21,856,401	+	12	118	91.39	-2.12	0.85	0.932379
11529	dm3.chr3R	21,857,352 – 21,857,421	- - - - - - - -	15842	21,857,352 – 21,857,421	-	3	70	92.38	-2.34	1.00	0.992036
11530	dm3.chr3R	21,862,039 – 21,862,143	- - - - - - - -	15843	21,862,039 – 21,862,143	-	12	120	86.96	-1.71	0.69	0.511983
11531	dm3.chr3R	21,894,817 – 21,894,916	- - - - - - - -	15844	21,894,817 – 21,894,916	-	9	119	85.65	-2.56	0.59	0.832642
11532	dm3.chr3R	21,898,745 – 21,898,845	- - - - - - - -	15845	21,898,745 – 21,898,845	-	12	110	92.14	-1.67	0.86	0.773133
11533	dm3.chr3R	21,905,855 – 21,905,955	- - - intron="intron;ID=intron_FBgn0039411:7_FBgn0039411:6;Name=dys-in;Parent=FBtr0113293,FBtr0113294,FBtr0300618;parent_type=mRNA" - - - -	15846	21,905,855 – 21,905,955	+	5	102	83.94	-1.87	0.79	0.867115
11534	dm3.chr3R	21,915,151 – 21,915,291	- - - intron="intron;ID=intron_FBgn0039411:11_FBgn0039411:10;Name=dys-in;Parent=FBtr0113293,FBtr0113294,FBtr0300618;parent_type=mRNA" - - - -	15847	21,915,151 – 21,915,254	+	12	119	88.02	-1.77	0.80	0.841187
11534	dm3.chr3R	21,915,151 – 21,915,291		15848	21,915,191 – 21,915,291	-	12	119	85.33	-2.23	0.60	0.769880
11535	dm3.chr3R	21,917,416 – 21,917,521	- - - intron="intron;ID=intron_FBgn0039411:11_FBgn0039411:10;Name=dys-in;Parent=FBtr0113293,FBtr0113294,FBtr0300618;parent_type=mRNA" - - - -	15849	21,917,416 – 21,917,521	+	10	115	79.05	-2.34	0.38	0.519876
11536	dm3.chr3R	21,917,671 – 21,917,764	- - - intron="intron;ID=intron_FBgn0039411:11_FBgn0039411:10;Name=dys-in;Parent=FBtr0113293,FBtr0113294,FBtr0300618;parent_type=mRNA" - - - -	15850	21,917,671 – 21,917,764	+	8	108	70.79	-1.24	0.50	0.677382
11537	dm3.chr3R	21,918,240 – 21,918,292	- - - intron="intron;ID=intron_FBgn0039411:11_FBgn0039411:10;Name=dys-in;Parent=FBtr0113293,FBtr0113294,FBtr0300618;parent_type=mRNA" - - - -	15851	21,918,240 – 21,918,292	+	3	52	100.00	-1.66	1.00	0.924224
11537	dm3.chr3R	21,918,240 – 21,918,292		15852	21,918,240 – 21,918,292	-	3	52	100.00	-1.44	1.00	0.867876
11538	dm3.chr3R	21,918,886 – 21,918,956	- - - intron="intron;ID=intron_FBgn0039411:11_FBgn0039411:10;Name=dys-in;Parent=FBtr0113293,FBtr0113294,FBtr0300618;parent_type=mRNA" - - - -	15853	21,918,886 – 21,918,956	+	11	70	96.73	-1.29	0.99	0.845305
11539	dm3.chr3R	21,919,697 – 21,919,792	- - - intron="intron;ID=intron_FBgn0039411:11_FBgn0039411:10;Name=dys-in;Parent=FBtr0113293,FBtr0113294,FBtr0300618;parent_type=mRNA" - - - -	15854	21,919,697 – 21,919,792	+	8	112	73.74	-2.21	0.36	0.641096
11539	dm3.chr3R	21,919,697 – 21,919,792		15855	21,919,697 – 21,919,792	-	8	112	73.74	-2.23	0.51	0.966377
11540	dm3.chr3R	21,939,500 – 21,939,616	- - - intron="intron;ID=intron_FBgn0051324:1_FBgn0051324:2;Name=CG31324-in;Parent=FBtr0084985;parent_type=mRNA" - - - -	15856	21,939,500 – 21,939,616	-	3	116	56.03	-2.24	0.30	0.862986
11541	dm3.chr3R	21,954,096 – 21,954,165	- - - intron="intron;ID=intron_FBgn0051324:2_FBgn0051324:3;Name=CG31324-in;Parent=FBtr0084985;parent_type=mRNA" - - - -	15857	21,954,096 – 21,954,165	+	5	82	62.13	-1.56	0.43	0.898172
11542	dm3.chr3R	21,973,357 – 21,973,486	- - - - - - - -	15858	21,973,357 – 21,973,455	+	6	115	72.93	-1.48	0.59	0.901589
11542	dm3.chr3R	21,973,357 – 21,973,486	- - - - - - - -	15859	21,973,394 – 21,973,486	+	7	115	58.81	-1.81	0.26	0.822346
11543	dm3.chr3R	21,977,325 – 21,977,452	- - - - - - - -	15860	21,977,325 – 21,977,422	-	4	98	93.68	-0.70	1.01	0.626481
11543	dm3.chr3R	21,977,325 – 21,977,452	- - - - - - - -	15861	21,977,351 – 21,977,452	-	6	110	84.91	-0.93	0.89	0.588178
11544	dm3.chr3R	21,980,661 – 21,980,733	- - - - - - - -	15862	21,980,661 – 21,980,733	+	5	73	88.67	-3.14	0.71	0.983353
11544	dm3.chr3R	21,980,661 – 21,980,733	- - - - - - - -	15863	21,980,661 – 21,980,733	-	5	73	88.67	-2.50	0.68	0.845292
11545	dm3.chr3R	21,984,606 – 21,984,726	- - - - - - - -	15864	21,984,606 – 21,984,726	+	5	120	97.33	-2.59	0.95	0.985241
11546	dm3.chr3R	21,987,843 – 21,987,949	- - - - - - - -	15865	21,987,843 – 21,987,938	-	7	99	70.08	-1.83	0.33	0.662140
11546	dm3.chr3R	21,987,843 – 21,987,949	- - - - - - - -	15866	21,987,858 – 21,987,949	-	7	104	69.84	-1.29	0.44	0.511174
11547	dm3.chr3R	22,006,921 – 22,007,004	- - - intron="intron;ID=intron_FBgn0051323:1_FBgn0051323:2;Name=CG31323-in;Parent=FBtr0084988;parent_type=mRNA" - - - -	15867	22,006,921 – 22,007,004	+	6	86	73.99	-1.74	0.45	0.685954
11548	dm3.chr3R	22,011,243 – 22,011,334	- - - - - - - -	15868	22,011,243 – 22,011,334	-	7	107	65.54	-1.42	0.48	0.941122
11549	dm3.chr3R	22,023,967 – 22,024,059	- - - - - - - -	15869	22,023,967 – 22,024,059	+	12	118	68.15	-1.14	0.42	0.523425
11550	dm3.chr3R	22,052,208 – 22,052,344	- - - - - - - -	15870	22,052,208 – 22,052,344	-	5	146	79.02	-2.78	0.56	0.977684
11551	dm3.chr3R	22,054,920 – 22,055,021	- - - - - - - -	15871	22,054,920 – 22,055,021	+	5	111	73.41	-1.76	0.52	0.793027
11552	dm3.chr3R	22,065,928 – 22,066,113	FBnoncoding="ncRNA;ID=FBtr0303214;Name=CR42745-RA;Parent=FBgn0261708;Dbxref=FlyBase_Annotation_IDs:CR42745-RA;score_text=Moderately" - - - - - - -	15872	22,065,928 – 22,066,022	+	5	98	79.13	-2.61	0.60	0.981226
11552	dm3.chr3R	22,065,928 – 22,066,113		15873	22,066,006 – 22,066,113	-	5	113	90.14	-1.91	0.76	0.605255
11553	dm3.chr3R	22,077,896 – 22,077,996	FBnoncoding="ncRNA;ID=FBtr0303214;Name=CR42745-RA;Parent=FBgn0261708;Dbxref=FlyBase_Annotation_IDs:CR42745-RA;score_text=Moderately" - - - - - - -	15874	22,077,896 – 22,077,996	-	6	100	80.93	-2.08	0.60	0.897558
11554	dm3.chr3R	22,078,790 – 22,078,911	- - - - - - - -	15875	22,078,790 – 22,078,911	+	11	122	78.87	-1.22	0.57	0.604579
11554	dm3.chr3R	22,078,790 – 22,078,911	- - - - - - - -	15876	22,078,790 – 22,078,911	-	11	122	78.87	-0.98	0.74	0.824621
11555	dm3.chr3R	22,082,827 – 22,082,926	- - - intron="intron;ID=intron_FBgn0000064:6_FBgn0000064:5;Name=Ald-in;Parent=FBtr0084994,FBtr0084995,FBtr0085001,FBtr0114544;parent_type=mRNA" - - - -	15877	22,082,827 – 22,082,926	-	6	119	69.82	-1.21	0.50	0.663806
11556	dm3.chr3R	22,084,859 – 22,084,959	- - - - - - - -	15878	22,084,859 – 22,084,959	+	6	101	87.38	-2.52	0.73	0.953487
11556	dm3.chr3R	22,084,859 – 22,084,959	- - - - - - - -	15879	22,084,859 – 22,084,959	-	6	101	87.38	-1.67	0.76	0.630934
11557	dm3.chr3R	22,093,631 – 22,093,721	- - - intron="intron;ID=intron_FBgn0039420:1_FBgn0039420:3;Name=CG6154-in;Parent=FBtr0300399;parent_type=mRNA" - - - -	15880	22,093,631 – 22,093,721	+	6	104	70.70	-1.32	0.51	0.825923
11557	dm3.chr3R	22,093,631 – 22,093,721		15881	22,093,631 – 22,093,721	-	6	104	70.70	-1.24	0.50	0.745372
11558	dm3.chr3R	22,114,175 – 22,114,280	- - - - - - - -	15882	22,114,175 – 22,114,280	-	12	120	87.32	-2.44	0.55	0.657941
11559	dm3.chr3R	22,114,800 – 22,114,953	- - - - - - - -	15883	22,114,800 – 22,114,953	-	3	166	86.55	-1.20	0.87	0.500000
11560	dm3.chr3R	22,119,586 – 22,119,680	- - - - - - - -	15884	22,119,586 – 22,119,680	-	7	100	73.37	-1.39	0.52	0.613508
11561	dm3.chr3R	22,138,619 – 22,138,709	- - - - - - - -	15885	22,138,619 – 22,138,709	+	12	107	66.69	-1.74	0.48	0.985084
11561	dm3.chr3R	22,138,619 – 22,138,709	- - - - - - - -	15886	22,138,619 – 22,138,709	-	12	107	66.69	-1.30	0.55	0.975146
11562	dm3.chr3R	22,138,975 – 22,139,078	- - - - - - - -	15887	22,138,975 – 22,139,078	+	8	115	71.13	-1.37	0.46	0.682690
11563	dm3.chr3R	22,155,710 – 22,155,806	- - - - - - - -	15888	22,155,710 – 22,155,806	+	12	121	76.76	-1.32	0.57	0.584683
11564	dm3.chr3R	22,163,738 – 22,163,839	- - - intron="intron;ID=intron_CG33970:2_CG33970:3;Name=CG33970-in;Parent=FBtr0100012;parent_type=mRNA" - - - -	15889	22,163,738 – 22,163,839	-	9	114	72.05	-1.64	0.56	0.973555
11565	dm3.chr3R	22,165,919 – 22,166,003	- - - intron="intron;ID=intron_CG33970:2_CG33970:3;Name=CG33970-in;Parent=FBtr0100012;parent_type=mRNA" - - - -	15890	22,165,919 – 22,166,003	+	5	86	94.24	-1.68	0.88	0.707764
11566	dm3.chr3R	22,173,774 – 22,173,883	- - - intron="intron;ID=intron_CG33970:2_CG33970:3;Name=CG33970-in;Parent=FBtr0100012;parent_type=mRNA" - - - -	15891	22,173,774 – 22,173,883	-	6	115	82.90	-2.12	0.54	0.620525
11567	dm3.chr3R	22,177,814 – 22,177,908	- - - intron="intron;ID=intron_CG33970:5_CG33970:6;Name=CG33970-in;Parent=FBtr0100012;parent_type=mRNA" - - - -	15892	22,177,814 – 22,177,908	+	11	108	69.35	-1.04	0.48	0.712807
11568	dm3.chr3R	22,181,915 – 22,182,045	- - CDS="CDS;ID=CDS_CG33970:7_10;Name=CG33970-cds;Parent=FBtr0100013;parent_type=mRNA" - - - - -	15893	22,181,915 – 22,182,045	+	15	131	73.54	-1.09	0.45	0.698902
11569	dm3.chr3R	22,190,212 – 22,190,302	- - - - - - - -	15894	22,190,212 – 22,190,302	-	11	119	76.43	-1.22	0.60	0.657982
11570	dm3.chr3R	22,193,285 – 22,193,375	- - - - - - - -	15895	22,193,285 – 22,193,375	-	8	98	74.48	-1.48	0.50	0.710605
11571	dm3.chr3R	22,195,688 – 22,195,782	- - - - - - - -	15896	22,195,688 – 22,195,782	+	6	98	90.18	-2.23	0.75	0.838765
11571	dm3.chr3R	22,195,688 – 22,195,782	- - - - - - - -	15897	22,195,688 – 22,195,782	-	6	98	90.18	-2.49	0.64	0.726383
11572	dm3.chr3R	22,209,182 – 22,209,240	- - - - - - - -	15898	22,209,182 – 22,209,240	-	5	58	58.28	-0.90	0.36	0.506941
11573	dm3.chr3R	22,213,023 – 22,213,079	- - - - - - - -	15899	22,213,023 – 22,213,079	-	3	56	58.28	-0.42	0.67	0.566512
11574	dm3.chr3R	22,219,705 – 22,219,797	- - - - - - - -	15900	22,219,705 – 22,219,797	-	4	110	62.50	-1.07	0.45	0.527399
11575	dm3.chr3R	22,220,443 – 22,220,568	- - - - - - - -	15901	22,220,443 – 22,220,534	-	10	111	80.16	-1.80	0.72	0.938649
				15902	22,220,469 – 22,220,567	-	12	119	86.25	-2.58	0.61	0.898997
				15903	22,220,469 – 22,220,568	-	12	118	86.90	-2.57	0.63	0.904392
11576	dm3.chr3R	22,221,926 – 22,222,028	- - - - - - - -	15904	22,221,926 – 22,222,028	+	12	117	74.75	-1.63	0.42	0.505529
11577	dm3.chr3R	22,224,954 – 22,225,058	- - - - - - - -	15905	22,224,954 – 22,225,050	+	10	105	77.14	-1.93	0.50	0.877265
11577	dm3.chr3R	22,224,954 – 22,225,058	- - - - - - - -	15906	22,224,956 – 22,225,058	+	8	104	83.15	-2.71	0.51	0.922124
11578	dm3.chr3R	22,225,352 – 22,225,508	- - - - - - - -	15907	22,225,352 – 22,225,468	-	8	116	72.63	-1.99	0.40	0.846820
11578	dm3.chr3R	22,225,352 – 22,225,508	- - - - - - - -	15908	22,225,392 – 22,225,508	-	8	120	86.16	-2.00	0.63	0.553108
11579	dm3.chr3R	22,234,459 – 22,234,550	- - - - - - - -	15909	22,234,459 – 22,234,550	-	5	100	88.51	-1.72	0.93	0.938343
11580	dm3.chr3R	22,246,468 – 22,246,559	- - - - - - - -	15910	22,246,468 – 22,246,559	-	12	107	72.11	-1.78	0.49	0.973206
11581	dm3.chr3R	22,248,710 – 22,248,819	- - - - - - - -	15911	22,248,710 – 22,248,819	+	12	115	81.30	-2.62	0.33	0.516969
11582	dm3.chr3R	22,268,921 – 22,269,024	- - - intron="intron;ID=intron_CG5441:1_CG5441:2;Name=dei-in;Parent=FBtr0085009;parent_type=mRNA" - - - -	15912	22,268,921 – 22,269,024	+	6	107	69.23	-2.04	0.34	0.791715
11582	dm3.chr3R	22,268,921 – 22,269,024		15913	22,268,921 – 22,269,024	-	6	107	69.23	-1.30	0.59	0.951985
11583	dm3.chr3R	22,271,397 – 22,271,489	- - - intron="intron;ID=intron_CG5441:1_CG5441:2;Name=dei-in;Parent=FBtr0085009;parent_type=mRNA" - - - -	15914	22,271,397 – 22,271,489	-	6	102	79.44	-1.81	0.80	0.966106
11584	dm3.chr3R	22,278,381 – 22,278,483	- - - intron="intron;ID=intron_FBgn0039427:1_FBgn0039427:2;Name=CG5447-in;Parent=FBtr0085012;parent_type=mRNA" - - - -	15915	22,278,381 – 22,278,483	-	8	108	70.39	-1.87	0.38	0.810368
11585	dm3.chr3R	22,280,937 – 22,281,036	- - - - - - - -	15916	22,280,937 – 22,281,036	-	3	99	94.61	-2.10	0.93	0.944587
11586	dm3.chr3R	22,286,505 – 22,286,595	- - - - - - - -	15917	22,286,505 – 22,286,595	+	8	104	61.37	-1.55	0.28	0.604761
11586	dm3.chr3R	22,286,505 – 22,286,595	- - - - - - - -	15918	22,286,505 – 22,286,595	-	8	104	61.37	-1.42	0.30	0.602553
11587	dm3.chr3R	22,288,126 – 22,288,241	- - - intron="intron;ID=intron_CG5455:1_CG5455:2;Name=CG5455-in;Parent=FBtr0085015;parent_type=mRNA" - - - -	15919	22,288,126 – 22,288,241	+	4	119	84.37	-1.73	0.80	0.813085
11588	dm3.chr3R	22,303,547 – 22,303,656	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15920	22,303,547 – 22,303,656	-	6	111	89.34	-2.71	0.66	0.903515
11589	dm3.chr3R	22,305,213 – 22,305,322	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15921	22,305,213 – 22,305,322	+	7	109	83.70	-1.30	0.73	0.597948
11590	dm3.chr3R	22,306,065 – 22,306,171	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15922	22,306,065 – 22,306,171	+	6	114	79.57	-2.36	0.55	0.933636
11590	dm3.chr3R	22,306,065 – 22,306,171		15923	22,306,065 – 22,306,171	-	6	114	79.57	-1.70	0.66	0.842374
11591	dm3.chr3R	22,307,578 – 22,307,676	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15924	22,307,578 – 22,307,676	-	6	108	78.16	-1.03	0.70	0.531189
11592	dm3.chr3R	22,321,031 – 22,321,158	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15925	22,321,031 – 22,321,158	-	10	134	90.99	-1.85	0.83	0.827344
11593	dm3.chr3R	22,325,180 – 22,325,275	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15926	22,325,180 – 22,325,275	+	6	105	85.99	-1.80	0.76	0.798186
11593	dm3.chr3R	22,325,180 – 22,325,275		15927	22,325,180 – 22,325,275	-	6	105	85.99	-2.35	0.86	0.985161
11594	dm3.chr3R	22,332,558 – 22,332,631	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15928	22,332,558 – 22,332,631	+	8	81	92.74	-2.83	0.90	0.991043
11594	dm3.chr3R	22,332,558 – 22,332,631		15929	22,332,558 – 22,332,631	-	8	81	92.74	-2.53	0.97	0.992897
11595	dm3.chr3R	22,338,145 – 22,338,244	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15930	22,338,145 – 22,338,244	-	4	99	57.26	-0.92	0.38	0.511567
11596	dm3.chr3R	22,353,960 – 22,354,060	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15931	22,353,960 – 22,354,060	+	5	120	74.32	-2.10	0.68	0.979620
11597	dm3.chr3R	22,354,093 – 22,354,204	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15932	22,354,093 – 22,354,204	+	6	118	68.39	-0.98	0.57	0.862731
11598	dm3.chr3R	22,355,913 – 22,355,972	- - - intron="intron;ID=intron_FBgn0039431:11_FBgn0039431:10;Name=CG6490-in;Parent=FBtr0302209,FBtr0302210,FBtr0305049;parent_type=mRNA" - - - -	15933	22,355,913 – 22,355,972	+	5	59	98.64	-1.42	0.99	0.855226
11599	dm3.chr3R	22,364,271 – 22,364,390	- - - intron="intron;ID=intron_FBgn0261263:4_FBgn0261263:5;Name=scrib-in;Parent=FBtr0302094,FBtr0302095,FBtr0302096,FBtr0302097,FBtr0302098,FBtr0302099,FBtr0302100,FBtr0302101,FBtr0302102,FBtr0302103;parent_type=mRNA" - - - -	15934	22,364,271 – 22,364,390	+	5	119	91.72	-1.56	0.89	0.750116
11600	dm3.chr3R	22,367,490 – 22,367,584	- - - intron="intron;ID=intron_FBgn0261263:4_FBgn0261263:5;Name=scrib-in;Parent=FBtr0302094,FBtr0302095,FBtr0302096,FBtr0302097,FBtr0302098,FBtr0302099,FBtr0302100,FBtr0302101,FBtr0302102,FBtr0302103;parent_type=mRNA" - - - -	15935	22,367,490 – 22,367,584	+	5	99	91.25	-1.95	0.91	0.939503
11600	dm3.chr3R	22,367,490 – 22,367,584		15936	22,367,490 – 22,367,584	-	5	99	91.25	-1.10	0.92	0.553002
11601	dm3.chr3R	22,367,848 – 22,367,933	- - - intron="intron;ID=intron_FBgn0261263:4_FBgn0261263:5;Name=scrib-in;Parent=FBtr0302094,FBtr0302095,FBtr0302096,FBtr0302097,FBtr0302098,FBtr0302099,FBtr0302100,FBtr0302101,FBtr0302102,FBtr0302103;parent_type=mRNA" - - - -	15937	22,367,848 – 22,367,933	-	5	91	93.05	-1.20	0.92	0.559571
11602	dm3.chr3R	22,375,088 – 22,375,192	- - - intron="intron;ID=intron_FBgn0261263:5_FBgn0261263:6;Name=scrib-in;Parent=FBtr0302094,FBtr0302095,FBtr0302096,FBtr0302097,FBtr0302098,FBtr0302099,FBtr0302100,FBtr0302101,FBtr0302102,FBtr0302103;parent_type=mRNA" - - - -	15938	22,375,088 – 22,375,192	+	5	104	87.08	-1.73	0.72	0.500000
11603	dm3.chr3R	22,377,313 – 22,377,407	- - - intron="intron;ID=intron_FBgn0261263:5_FBgn0261263:6;Name=scrib-in;Parent=FBtr0302094,FBtr0302095,FBtr0302096,FBtr0302097,FBtr0302098,FBtr0302099,FBtr0302100,FBtr0302101,FBtr0302102,FBtr0302103;parent_type=mRNA" - - - -	15939	22,377,313 – 22,377,407	+	6	99	80.04	-2.15	0.57	0.836092
11604	dm3.chr3R	22,379,061 – 22,379,160	- - - intron="intron;ID=intron_FBgn0261263:5_FBgn0261263:6;Name=scrib-in;Parent=FBtr0302094,FBtr0302095,FBtr0302096,FBtr0302097,FBtr0302098,FBtr0302099,FBtr0302100,FBtr0302101,FBtr0302102,FBtr0302103;parent_type=mRNA" - - - -	15940	22,379,061 – 22,379,160	+	6	99	77.16	-2.26	0.70	0.991830
11605	dm3.chr3R	22,382,080 – 22,382,178	- - - intron="intron;ID=intron_FBgn0261263:7_FBgn0261263:8;Name=scrib-in;Parent=FBtr0302094,FBtr0302095,FBtr0302096,FBtr0302097,FBtr0302098,FBtr0302099,FBtr0302100,FBtr0302101,FBtr0302102,FBtr0302103;parent_type=mRNA" - - - -	15941	22,382,080 – 22,382,178	+	7	109	70.03	-1.78	0.58	0.989084
11605	dm3.chr3R	22,382,080 – 22,382,178		15942	22,382,080 – 22,382,178	-	7	109	70.03	-1.66	0.41	0.790338
11606	dm3.chr3R	22,392,834 – 22,392,924	- - CDS="CDS;ID=CDS_FBgn0261263:9_206;Name=scrib-cds;Parent=FBtr0302094,FBtr0302095,FBtr0302096,FBtr0302097,FBtr0302098,FBtr0302099,FBtr0302100,FBtr0302101,FBtr0302102,FBtr0302103;parent_type=mRNA" - - - - -	15943	22,392,834 – 22,392,924	+	6	93	81.10	-2.49	0.70	0.987196
11606	dm3.chr3R	22,392,834 – 22,392,924		15944	22,392,834 – 22,392,924	-	6	93	81.10	-1.76	0.60	0.661753
11607	dm3.chr3R	22,395,783 – 22,395,878	- - - intron="intron;ID=intron_FBgn0261263:11_FBgn0261263:12;Name=scrib-in;Parent=FBtr0302096;parent_type=mRNA" - - - -	15945	22,395,783 – 22,395,878	+	4	97	92.76	-2.15	0.83	0.847374
11607	dm3.chr3R	22,395,783 – 22,395,878		15946	22,395,783 – 22,395,878	-	4	97	92.76	-3.02	0.93	0.995199
11608	dm3.chr3R	22,397,211 – 22,397,268	- - - intron="intron;ID=intron_FBgn0261263:11_FBgn0261263:12;Name=scrib-in;Parent=FBtr0302096;parent_type=mRNA" - - - -	15947	22,397,211 – 22,397,268	+	5	59	96.19	-3.75	0.98	0.998459
11608	dm3.chr3R	22,397,211 – 22,397,268		15948	22,397,211 – 22,397,268	-	5	59	96.19	-3.92	0.98	0.998642
11609	dm3.chr3R	22,397,481 – 22,397,575	- - - intron="intron;ID=intron_FBgn0261263:11_FBgn0261263:12;Name=scrib-in;Parent=FBtr0302096;parent_type=mRNA" - - - -	15949	22,397,481 – 22,397,575	+	5	96	93.86	-2.06	0.79	0.623404
11610	dm3.chr3R	22,398,148 – 22,398,274	- - - intron="intron;ID=intron_FBgn0261263:11_FBgn0261263:12;Name=scrib-in;Parent=FBtr0302096;parent_type=mRNA" - - - -	15950	22,398,148 – 22,398,247	-	6	103	88.24	-2.80	0.76	0.981475
				15951	22,398,181 – 22,398,274	+	7	93	75.58	-1.53	0.57	0.878008
				15952	22,398,181 – 22,398,274	-	7	93	75.58	-1.29	0.65	0.889292
11611	dm3.chr3R	22,406,113 – 22,406,214	- - CDS="CDS;ID=CDS_FBgn0261263:25_206;Name=scrib-cds;Parent=FBtr0302094,FBtr0302095,FBtr0302096,FBtr0302097,FBtr0302099,FBtr0302100,FBtr0302101,FBtr0302102,FBtr0302103;parent_type=mRNA" - - - - -	15953	22,406,113 – 22,406,214	+	10	104	62.20	-0.10	0.55	0.742685
11612	dm3.chr3R	22,422,481 – 22,422,590	- - - - - - - -	15954	22,422,481 – 22,422,575	+	6	108	74.40	-2.32	0.63	0.993006
				15955	22,422,481 – 22,422,575	-	6	108	74.40	-2.22	0.55	0.977196
				15956	22,422,491 – 22,422,590	+	7	113	74.50	-2.42	0.41	0.940343
11613	dm3.chr3R	22,435,912 – 22,436,007	- - - - - - - -	15957	22,435,912 – 22,436,007	-	12	107	83.92	-2.63	0.45	0.761807
11614	dm3.chr3R	22,451,190 – 22,451,245	- - CDS="CDS;ID=CDS_CG6447:1_92;Name=TwdlL-cds;Parent=FBtr0085055;parent_type=mRNA" - - - - -	15958	22,451,190 – 22,451,245	+	12	58	77.02	-1.44	0.48	0.647961
11615	dm3.chr3R	22,455,186 – 22,455,276	- - - - - - - -	15959	22,455,186 – 22,455,276	+	7	99	65.87	-1.79	0.30	0.521428
11616	dm3.chr3R	22,457,551 – 22,457,650	- - - - - - - -	15960	22,457,551 – 22,457,650	-	6	99	85.38	-1.42	0.78	0.650107
11617	dm3.chr3R	22,468,887 – 22,468,983	- - - - - - - -	15961	22,468,887 – 22,468,983	+	6	108	50.20	-1.71	0.18	0.622149
11618	dm3.chr3R	22,472,770 – 22,472,864	- - - - - - - -	15962	22,472,770 – 22,472,864	+	6	100	77.05	-1.41	0.74	0.916974
11619	dm3.chr3R	22,475,907 – 22,476,006	- - - intron="intron;ID=intron_FBgn0250908:2_FBgn0250908:1;Name=beat-VII-in;Parent=FBtr0290328;parent_type=mRNA" - - - -	15963	22,475,907 – 22,476,006	-	10	118	70.17	-1.06	0.55	0.839703
11620	dm3.chr3R	22,484,144 – 22,484,268	- - - - - - - -	15964	22,484,144 – 22,484,245	+	12	111	84.85	-3.03	0.56	0.980160
				15965	22,484,144 – 22,484,245	-	12	111	84.85	-2.31	0.57	0.823626
				15966	22,484,165 – 22,484,268	+	12	112	82.77	-1.84	0.71	0.924428
				15967	22,484,165 – 22,484,268	-	12	112	82.77	-1.58	0.61	0.569617
11621	dm3.chr3R	22,497,097 – 22,497,192	- - - intron="intron;ID=intron_FBgn0250908:9_FBgn0250908:8;Name=beat-VII-in;Parent=FBtr0290328;parent_type=mRNA" - - - -	15968	22,497,097 – 22,497,192	-	7	104	77.14	-1.26	0.69	0.815062
11622	dm3.chr3R	22,508,163 – 22,508,254	- - - - - - - -	15969	22,508,163 – 22,508,254	+	5	93	85.71	-2.06	0.81	0.945513
11623	dm3.chr3R	22,511,506 – 22,511,601	- - - - - - - -	15970	22,511,506 – 22,511,601	-	6	97	64.66	-1.33	0.35	0.517459
11624	dm3.chr3R	22,511,674 – 22,511,786	- - - - - - - -	15971	22,511,674 – 22,511,786	-	6	123	73.19	-0.87	0.64	0.629412
11625	dm3.chr3R	22,546,960 – 22,547,052	- - CDS="CDS;ID=CDS_CG6420:3_90;Name=CG6420-cds;Parent=FBtr0085046;parent_type=mRNA" - - - - -	15972	22,546,960 – 22,547,052	+	9	93	63.60	-0.96	0.35	0.544712
11626	dm3.chr3R	22,553,663 – 22,553,713	- - - intron="intron;ID=intron_FBgn0040608:1_FBgn0040608:2;Name=CG14246-in;Parent=FBtr0100441;parent_type=mRNA" - - - -	15973	22,553,663 – 22,553,713	+	5	50	96.80	-1.82	0.97	0.937488
11627	dm3.chr3R	22,570,350 – 22,570,454	- - - - - - - -	15974	22,570,350 – 22,570,454	+	12	119	81.86	-2.74	0.74	0.995184
11627	dm3.chr3R	22,570,350 – 22,570,454	- - - - - - - -	15975	22,570,350 – 22,570,454	-	12	119	81.86	-4.84	0.92	0.999065
11628	dm3.chr3R	22,589,809 – 22,589,912	- - - - - - - -	15976	22,589,809 – 22,589,912	+	5	103	91.75	-2.27	0.75	0.774754
11628	dm3.chr3R	22,589,809 – 22,589,912	- - - - - - - -	15977	22,589,809 – 22,589,912	-	5	103	91.75	-2.33	0.71	0.694552
11629	dm3.chr3R	22,600,011 – 22,600,074	- - - - - - - -	15978	22,600,011 – 22,600,074	+	5	81	67.61	-2.26	0.74	0.997828
11630	dm3.chr3R	22,602,387 – 22,602,482	- - - - - - - -	15979	22,602,387 – 22,602,482	+	11	106	73.76	-1.58	0.59	0.969620
11631	dm3.chr3R	22,609,050 – 22,609,162	- - - - - - - -	15980	22,609,050 – 22,609,162	-	12	116	69.57	-1.40	0.38	0.791494
11632	dm3.chr3R	22,609,698 – 22,609,818	- - CDS="CDS;ID=CDS_FBgn0261860:2_224;Name=CG42789-cds;Parent=FBtr0303488;parent_type=mRNA" - - - - -	15981	22,609,698 – 22,609,818	-	6	120	77.67	-1.64	0.55	0.708798
11633	dm3.chr3R	22,614,244 – 22,614,351	- - - - - - - -	15982	22,614,244 – 22,614,351	-	6	114	77.38	-1.12	0.68	0.588371
11634	dm3.chr3R	22,622,749 – 22,622,817	- - - - - - - -	15983	22,622,749 – 22,622,817	+	12	79	81.75	-1.27	0.77	0.755711
11635	dm3.chr3R	22,624,089 – 22,624,192	- - - - - - - -	15984	22,624,089 – 22,624,192	+	6	111	68.10	-1.97	0.48	0.981534
11636	dm3.chr3R	22,626,458 – 22,626,552	- - - intron="intron;ID=intron_CG5490:1_CG5490:2;Name=Tl-in;Parent=FBtr0085060,FBtr0085059;parent_type=mRNA" - - - -	15985	22,626,458 – 22,626,552	+	8	103	61.71	-1.66	0.36	0.948358
11637	dm3.chr3R	22,633,954 – 22,634,086	- - - intron="intron;ID=intron_CG5490:1_CG5490:2;Name=Tl-in;Parent=FBtr0085060,FBtr0085059;parent_type=mRNA" - - - -	15986	22,633,954 – 22,634,069	-	6	120	73.48	-1.74	0.43	0.679013
11637	dm3.chr3R	22,633,954 – 22,634,086		15987	22,633,992 – 22,634,086	-	4	96	79.89	-2.37	0.68	0.957870
11638	dm3.chr3R	22,634,527 – 22,634,623	- - - intron="intron;ID=intron_CG5490:1_CG5490:2;Name=Tl-in;Parent=FBtr0085060,FBtr0085059;parent_type=mRNA" - - - -	15988	22,634,527 – 22,634,623	-	10	106	68.54	-1.11	0.63	0.978827
11639	dm3.chr3R	22,644,629 – 22,644,723	- - - intron="intron;ID=intron_CG5490:1_CG5490:2;Name=Tl-in;Parent=FBtr0085060,FBtr0085059;parent_type=mRNA" - - - -	15989	22,644,629 – 22,644,723	+	11	111	71.74	-0.75	0.59	0.645220
11639	dm3.chr3R	22,644,629 – 22,644,723		15990	22,644,629 – 22,644,723	-	11	111	71.74	-1.18	0.51	0.739727
11640	dm3.chr3R	22,647,471 – 22,647,546	- - - intron="intron;ID=intron_CG5490:1_CG5490:2;Name=Tl-in;Parent=FBtr0085060,FBtr0085059;parent_type=mRNA" - - - -	15991	22,647,471 – 22,647,546	-	7	75	77.97	-1.29	0.59	0.642624
11641	dm3.chr3R	22,670,833 – 22,670,927	- - - intron="intron;ID=intron_FBgn0051072:5_FBgn0051072:4;Name=Lerp-in;Parent=FBtr0085097,FBtr0085099;parent_type=mRNA" - - - -	15992	22,670,833 – 22,670,927	+	5	118	76.22	-1.40	0.61	0.600624
11642	dm3.chr3R	22,673,780 – 22,673,838	- - - intron="intron;ID=intron_FBgn0051072:6_FBgn0051072:5;Name=Lerp-in;Parent=FBtr0085097,FBtr0085099,FBtr0300939;parent_type=mRNA" - - - -	15993	22,673,780 – 22,673,838	-	10	61	76.80	-1.68	0.44	0.693824
11643	dm3.chr3R	22,686,471 – 22,686,525	- - - intron="intron;ID=intron_FBgn0051072:11_FBgn0051072:10;Name=Lerp-in;Parent=FBtr0085097,FBtr0085099,FBtr0300939;parent_type=mRNA" - - - -	15994	22,686,471 – 22,686,525	-	5	61	63.91	-1.25	0.49	0.868828
11644	dm3.chr3R	22,699,904 – 22,699,995	- - CDS="CDS;ID=CDS_FBgn0004903:9_2;Name=Rb97D-cds;Parent=FBtr0100339;parent_type=mRNA" - - - - -	15995	22,699,904 – 22,699,995	+	5	115	63.99	-1.25	0.44	0.591023
11645	dm3.chr3R	22,709,716 – 22,709,821	- - CDS="CDS;ID=CDS_CG5507:2_32;Name=T48-cds;Parent=FBtr0085065;parent_type=mRNA" - - - - -	15996	22,709,716 – 22,709,821	-	12	117	70.64	-0.83	0.51	0.707244
11646	dm3.chr3R	22,714,507 – 22,714,608	- - - intron="intron;ID=intron_CG5507:2_CG5507:3;Name=T48-in;Parent=FBtr0085065;parent_type=mRNA" - - - -	15997	22,714,507 – 22,714,608	+	7	107	69.76	-1.69	0.40	0.867561
11646	dm3.chr3R	22,714,507 – 22,714,608		15998	22,714,507 – 22,714,608	-	7	107	69.76	-1.69	0.39	0.840887
11647	dm3.chr3R	22,716,156 – 22,716,287	- - - intron="intron;ID=intron_CG5507:2_CG5507:3;Name=T48-in;Parent=FBtr0085065;parent_type=mRNA" - - - -	15999	22,716,156 – 22,716,251	+	7	105	69.86	-2.23	0.42	0.973944
				16000	22,716,156 – 22,716,251	-	7	105	69.86	-2.93	0.46	0.998551
				16001	22,716,193 – 22,716,287	+	6	107	69.13	-1.27	0.50	0.742060
				16002	22,716,193 – 22,716,287	-	6	107	69.13	-1.59	0.48	0.875141
11648	dm3.chr3R	22,724,677 – 22,724,730	- - - intron="intron;ID=intron_CG5507:2_CG5507:3;Name=T48-in;Parent=FBtr0085065;parent_type=mRNA" - - - -	16003	22,724,677 – 22,724,730	-	5	53	78.88	-1.50	0.79	0.874495
11649	dm3.chr3R	22,727,388 – 22,727,495	- - - intron="intron;ID=intron_CG5507:2_CG5507:3;Name=T48-in;Parent=FBtr0085065;parent_type=mRNA" - - - -	16004	22,727,388 – 22,727,495	+	6	111	68.11	-0.64	0.54	0.602730
11650	dm3.chr3R	22,732,399 – 22,732,484	- - - intron="intron;ID=intron_CG5507:2_CG5507:3;Name=T48-in;Parent=FBtr0085065;parent_type=mRNA" - - - -	16005	22,732,399 – 22,732,484	+	8	106	70.86	-1.60	0.42	0.598918
11650	dm3.chr3R	22,732,399 – 22,732,484		16006	22,732,399 – 22,732,484	-	8	106	70.86	-1.68	0.53	0.935174
11651	dm3.chr3R	22,733,124 – 22,733,227	- - - intron="intron;ID=intron_CG5507:2_CG5507:3;Name=T48-in;Parent=FBtr0085065;parent_type=mRNA" - - - -	16007	22,733,124 – 22,733,227	+	5	108	69.97	-1.75	0.61	0.979836
11651	dm3.chr3R	22,733,124 – 22,733,227		16008	22,733,124 – 22,733,227	-	5	108	69.97	-1.73	0.56	0.961033
11652	dm3.chr3R	22,736,228 – 22,736,290	- - - - - - - -	16009	22,736,228 – 22,736,290	+	10	75	69.59	-3.77	0.46	0.999825
11652	dm3.chr3R	22,736,228 – 22,736,290	- - - - - - - -	16010	22,736,228 – 22,736,290	-	10	75	69.59	-3.80	0.38	0.999549
11653	dm3.chr3R	22,750,158 – 22,750,266	- - - intron="intron;ID=intron_FBgn0015541:2_FBgn0015541:3;Name=sda-in;Parent=FBtr0085066,FBtr0112882,FBtr0305065;parent_type=mRNA" - - - -	16011	22,750,158 – 22,750,266	+	6	116	79.76	-1.79	0.60	0.741208
11654	dm3.chr3R	22,757,311 – 22,757,401	- - - intron="intron;ID=intron_FBgn0015541:4_FBgn0015541:6;Name=sda-in;Parent=FBtr0305065;parent_type=mRNA" - - - -	16012	22,757,311 – 22,757,401	-	11	93	72.13	-1.57	0.52	0.951181
11655	dm3.chr3R	22,772,983 – 22,773,065	FBnoncoding="tRNA;ID=FBtr0085087;Name=tRNA:CR31071-RA;Parent=FBgn0051071;Alias=CR31071-RA;Dbxref=FlyBase_Annotation_IDs:CR31071-RA;score_text=Weakly" tRNAscann="Gln_chr3R_trna41" - - "Rfam_10.0=RF00005;tRNA;ABJB010446824.1/776-847\|1.3e-24" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|7.7e-23" "unique_Noncode_2.0=u183049_mRNAlike\|6.7e-23" -	16013	22,772,983 – 22,773,065	+	12	83	82.90	-2.38	0.86	0.995595
11655	dm3.chr3R	22,772,983 – 22,773,065		16014	22,772,983 – 22,773,065	-	12	83	82.90	-1.55	0.85	0.963202
11656	dm3.chr3R	22,773,221 – 22,773,351	FBnoncoding="tRNA;ID=FBtr0085086;Name=tRNA:CR31070-RA;Parent=FBgn0051070;Alias=CR31070-RA;Dbxref=FlyBase_Annotation_IDs:CR31070-RA;score_text=Weakly" tRNAscann="Gln_chr3R_trna40" - - "Rfam_10.0=RF00005;tRNA;ABJB010446824.1/776-847\|2.2e-24" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|1.3e-22" "unique_Noncode_2.0=u183049_mRNAlike\|1.2e-22" -	16015	22,773,221 – 22,773,351	+	14	142	67.14	-1.90	0.68	0.999388
11656	dm3.chr3R	22,773,221 – 22,773,351		16016	22,773,221 – 22,773,351	-	14	142	67.14	-1.16	0.72	0.995736
11657	dm3.chr3R	22,807,675 – 22,807,733	- - - intron="intron;ID=intron_CG14253:9_CG14253:2;Name=CG14253-in;Parent=FBtr0085072,FBtr0085073;parent_type=mRNA" - - - -	16017	22,807,675 – 22,807,733	-	6	70	65.26	-2.01	0.35	0.860000
11658	dm3.chr3R	22,814,940 – 22,815,060	- - CDS="CDS;ID=CDS_CG31076:3_54;Name=CG31076-cds;Parent=FBtr0085079;parent_type=mRNA" - - - - -	16018	22,814,940 – 22,815,060	+	12	120	80.31	-1.70	0.50	0.524357
11659	dm3.chr3R	22,819,137 – 22,819,248	- - - - - - - -	16019	22,819,137 – 22,819,248	-	6	111	82.99	-1.66	0.71	0.700036
11660	dm3.chr3R	22,861,963 – 22,862,073	- - - intron="intron;ID=intron_CG5811:3_CG5811:4;Name=NepYr-in;Parent=FBtr0085100;parent_type=mRNA" - - - -	16020	22,861,963 – 22,862,072	+	6	120	74.24	-1.18	0.58	0.537303
11660	dm3.chr3R	22,861,963 – 22,862,073		16021	22,861,964 – 22,862,073	+	6	120	74.61	-1.41	0.58	0.723529
11661	dm3.chr3R	22,864,539 – 22,864,655	- - - intron="intron;ID=intron_CG5811:3_CG5811:4;Name=NepYr-in;Parent=FBtr0085100;parent_type=mRNA" - - - -	16022	22,864,539 – 22,864,655	-	8	119	76.21	-2.03	0.48	0.869035
11662	dm3.chr3R	22,868,393 – 22,868,485	- - - intron="intron;ID=intron_CG5811:3_CG5811:4;Name=NepYr-in;Parent=FBtr0085100;parent_type=mRNA" - - - -	16023	22,868,393 – 22,868,485	-	5	92	89.82	-1.58	0.82	0.574574
11663	dm3.chr3R	22,870,801 – 22,870,862	- - - intron="intron;ID=intron_CG5811:3_CG5811:4;Name=NepYr-in;Parent=FBtr0085100;parent_type=mRNA" - - - -	16024	22,870,801 – 22,870,862	-	6	75	72.62	-1.56	0.51	0.656756
11664	dm3.chr3R	22,872,639 – 22,872,732	- - - intron="intron;ID=intron_CG5811:3_CG5811:4;Name=NepYr-in;Parent=FBtr0085100;parent_type=mRNA" - - - -	16025	22,872,639 – 22,872,732	-	6	93	73.78	-1.67	0.45	0.677807
11665	dm3.chr3R	22,881,724 – 22,881,906	- - - - - - - -	16026	22,881,724 – 22,881,835	+	7	120	78.37	-1.99	0.57	0.931769
				16027	22,881,724 – 22,881,835	-	7	120	78.37	-2.09	0.50	0.875744
				16028	22,881,755 – 22,881,870	+	7	120	83.43	-2.02	0.60	0.773416
				16029	22,881,795 – 22,881,906	+	7	117	75.40	-2.47	0.57	0.994458
11666	dm3.chr3R	22,896,819 – 22,896,995	- - - - - - - -	16030	22,896,819 – 22,896,995	+	6	176	73.17	-1.65	0.45	0.654546
11667	dm3.chr3R	22,909,417 – 22,909,511	- - CDS="CDS;ID=CDS_CG6131:4_77;Name=Cpr97Ea-cds;Parent=FBtr0085136;parent_type=mRNA" - - - - -	16031	22,909,417 – 22,909,511	+	6	110	57.78	-1.30	0.45	0.972843
11668	dm3.chr3R	22,953,455 – 22,953,558	- - - intron="intron;ID=intron_FBgn0039492:4_FBgn0039492:3;Name=CG6051-in;Parent=FBtr0113297,FBtr0305050;parent_type=mRNA" - - - -	16032	22,953,455 – 22,953,558	+	9	105	56.25	-0.88	0.32	0.627362
11669	dm3.chr3R	22,955,661 – 22,955,763	- - - intron="intron;ID=intron_FBgn0039492:6_FBgn0039492:5;Name=CG6051-in;Parent=FBtr0113297,FBtr0305050;parent_type=mRNA" - - - -	16033	22,955,661 – 22,955,763	+	6	106	62.11	-0.87	0.49	0.858801
11670	dm3.chr3R	22,958,723 – 22,958,814	- - - intron="intron;ID=intron_FBgn0039492:6_FBgn0039492:5;Name=CG6051-in;Parent=FBtr0113297,FBtr0305050;parent_type=mRNA" - - - -	16034	22,958,723 – 22,958,814	+	5	111	70.81	-2.44	0.39	0.906356
11671	dm3.chr3R	22,966,579 – 22,966,635	- - - intron="intron;ID=intron_FBgn0039492:6_FBgn0039492:5;Name=CG6051-in;Parent=FBtr0113297,FBtr0305050;parent_type=mRNA" - - - -	16035	22,966,579 – 22,966,635	+	4	57	74.93	-1.08	0.77	0.782555
11672	dm3.chr3R	22,979,630 – 22,979,690	- - - intron="intron;ID=intron_FBgn0029155:1_FBgn0029155:2;Name=Men-b-in;Parent=FBtr0085110,FBtr0301707,FBtr0301708;parent_type=mRNA" - - - -	16036	22,979,630 – 22,979,690	+	6	64	85.50	-1.54	0.88	0.897981
11673	dm3.chr3R	22,990,578 – 22,990,639	- - CDS="CDS;ID=CDS_FBgn0051065:6_143;Name=CG31065-cds;Parent=FBtr0113383;parent_type=mRNA" - - - - -	16037	22,990,578 – 22,990,639	-	12	61	73.77	-1.11	0.50	0.791804
11674	dm3.chr3R	22,995,581 – 22,995,712	- - - - - - - -	16038	22,995,581 – 22,995,672	+	6	92	59.48	-1.03	0.49	0.967471
				16039	22,995,581 – 22,995,672	-	6	92	59.48	-1.12	0.37	0.782136
				16040	22,995,615 – 22,995,712	+	10	111	72.77	-1.72	0.43	0.847443
				16041	22,995,615 – 22,995,712	-	10	111	72.77	-2.04	0.38	0.871988
11675	dm3.chr3R	22,997,401 – 22,997,493	- - - - - - - -	16042	22,997,401 – 22,997,493	-	10	100	76.30	-2.71	0.58	0.995643
11676	dm3.chr3R	23,003,827 – 23,003,910	- - - intron="intron;ID=intron_CG6127:9_CG6127:10;Name=Ser-in;Parent=FBtr0085128;parent_type=mRNA" - - - -	16043	23,003,827 – 23,003,910	+	6	103	63.23	-1.39	0.41	0.895598
11677	dm3.chr3R	23,007,463 – 23,007,526	- - - intron="intron;ID=intron_CG6127:6_CG6127:7;Name=Ser-in;Parent=FBtr0085128;parent_type=mRNA" - - - -	16044	23,007,463 – 23,007,526	-	5	64	69.70	-1.25	0.49	0.644899
11678	dm3.chr3R	23,009,423 – 23,009,502	- - - intron="intron;ID=intron_CG6127:5_CG6127:6;Name=Ser-in;Parent=FBtr0085128;parent_type=mRNA" - - - -	16045	23,009,423 – 23,009,502	-	4	79	96.62	-1.17	0.97	0.680759
11679	dm3.chr3R	23,028,349 – 23,028,446	- - - - - - - -	16046	23,028,349 – 23,028,446	+	11	110	66.90	-1.12	0.45	0.822541
11679	dm3.chr3R	23,028,349 – 23,028,446	- - - - - - - -	16047	23,028,349 – 23,028,446	-	11	110	66.90	-1.05	0.51	0.914228
11680	dm3.chr3R	23,037,415 – 23,037,505	- - - - - - - -	16048	23,037,415 – 23,037,505	-	7	97	93.63	-2.44	0.95	0.988299
11681	dm3.chr3R	23,043,467 – 23,043,521	- - CDS="CDS;ID=CDS_FBgn0054006:3_229;Name=CG34006-cds;Parent=FBtr0303711;parent_type=mRNA" - - - - -	16049	23,043,467 – 23,043,521	-	3	54	100.00	-1.13	1.00	0.722234
11682	dm3.chr3R	23,056,880 – 23,056,932	- - - intron="intron;ID=intron_FBgn0051064:5_FBgn0051064:2;Name=CG31064-in;Parent=FBtr0085125;parent_type=mRNA" - - - -	16050	23,056,880 – 23,056,932	+	3	52	94.81	-0.58	1.04	0.666431
11683	dm3.chr3R	23,068,724 – 23,068,843	- - CDS="CDS;ID=CDS_CG18766:5_55;Name=CG18766-cds;Parent=FBtr0085122,FBtr0085123;parent_type=mRNA" - - - - -	16051	23,068,724 – 23,068,843	-	10	119	79.22	-1.29	0.62	0.731570
11684	dm3.chr3R	23,080,785 – 23,080,880	- - CDS="CDS;ID=CDS_CG5930:3_12;Name=TfIIA-L-cds;Parent=FBtr0085155;parent_type=mRNA" - - - - -	16052	23,080,785 – 23,080,880	+	10	98	67.25	-1.17	0.54	0.971732
11685	dm3.chr3R	23,106,099 – 23,106,209	- - - - - - - -	16053	23,106,099 – 23,106,206	-	6	111	72.88	-1.80	0.42	0.684580
11685	dm3.chr3R	23,106,099 – 23,106,209	- - - - - - - -	16054	23,106,102 – 23,106,209	-	6	111	71.59	-2.08	0.53	0.983777
11686	dm3.chr3R	23,107,517 – 23,107,608	- - - - - - - -	16055	23,107,517 – 23,107,608	-	8	111	81.68	-1.18	0.77	0.529701
11687	dm3.chr3R	23,107,971 – 23,108,074	- - - - - - - -	16056	23,107,971 – 23,108,074	+	6	114	76.63	-1.98	0.50	0.821891
11687	dm3.chr3R	23,107,971 – 23,108,074	- - - - - - - -	16057	23,107,971 – 23,108,074	-	6	114	76.63	-1.59	0.53	0.619974
11688	dm3.chr3R	23,109,441 – 23,109,557	- - - - - - - -	16058	23,109,441 – 23,109,557	+	5	129	78.49	-1.35	0.67	0.500000
11689	dm3.chr3R	23,114,648 – 23,114,762	- - CDS="CDS;ID=CDS_CG3373:1_16;Name=Hmu-cds;Parent=FBtr0085164;parent_type=mRNA" - - - - -	16059	23,114,648 – 23,114,762	+	12	114	79.69	-1.29	0.71	0.879699
11690	dm3.chr3R	23,119,083 – 23,119,177	- - - - - - - -	16060	23,119,083 – 23,119,177	+	5	100	71.97	-1.21	0.61	0.789439
11690	dm3.chr3R	23,119,083 – 23,119,177	- - - - - - - -	16061	23,119,083 – 23,119,177	-	5	100	71.97	-1.57	0.48	0.666490
11691	dm3.chr3R	23,136,091 – 23,136,264	- - - intron="intron;ID=intron_FBgn0039510:17_FBgn0039510:15;Name=CG3339-in;Parent=FBtr0273192;parent_type=mRNA" - - - -	16062	23,136,091 – 23,136,264	-	9	195	66.57	-1.85	0.37	0.924154
11692	dm3.chr3R	23,146,695 – 23,146,807	- - CDS="CDS;ID=CDS_FBgn0039510:34_94;Name=CG3339-cds;Parent=FBtr0273193;parent_type=mRNA" - - - - -	16063	23,146,695 – 23,146,807	+	13	136	77.64	-2.19	0.55	0.972464
11693	dm3.chr3R	23,157,317 – 23,157,384	- - - - - - - -	16064	23,157,317 – 23,157,384	+	8	67	80.84	-1.00	0.76	0.561670
11694	dm3.chr3R	23,160,132 – 23,160,276	- - - - - - - -	16065	23,160,132 – 23,160,244	-	5	114	92.36	-2.61	0.84	0.965663
11694	dm3.chr3R	23,160,132 – 23,160,276	- - - - - - - -	16066	23,160,170 – 23,160,276	+	5	108	91.18	-2.49	0.74	0.859514
11695	dm3.chr3R	23,163,953 – 23,164,061	- - - - - - - -	16067	23,163,953 – 23,164,061	+	10	114	90.35	-1.56	0.88	0.813674
11696	dm3.chr3R	23,181,020 – 23,181,111	- - - intron="intron;ID=intron_FBgn0260487:1_FBgn0260487:2;Name=CG42534-in;Parent=FBtr0300898;parent_type=mRNA" - - - -	16068	23,181,020 – 23,181,111	+	11	105	75.40	-1.81	0.60	0.978315
11697	dm3.chr3R	23,186,185 – 23,186,305	- - CDS="CDS;ID=CDS_FBgn0260487:2_94;Name=CG42534-cds;Parent=FBtr0300898;parent_type=mRNA" - - - - -	16069	23,186,185 – 23,186,305	+	15	120	81.55	-1.69	0.51	0.563635
11698	dm3.chr3R	23,189,014 – 23,189,106	- - CDS="CDS;ID=CDS_FBgn0260487:4_94;Name=CG42534-cds;Parent=FBtr0300898;parent_type=mRNA" - - - - -	16070	23,189,014 – 23,189,106	+	6	98	75.67	-1.40	0.61	0.763967
11699	dm3.chr3R	23,192,535 – 23,192,634	- - - intron="intron;ID=intron_FBgn0260487:4_FBgn0260487:5;Name=CG42534-in;Parent=FBtr0300898;parent_type=mRNA" - - - -	16071	23,192,535 – 23,192,634	+	12	105	76.49	-0.78	0.65	0.725952
11700	dm3.chr3R	23,198,823 – 23,198,917	- - - - - - - -	16072	23,198,823 – 23,198,917	+	6	103	73.70	-1.89	0.41	0.596369
11701	dm3.chr3R	23,203,157 – 23,203,261	- - - intron="intron;ID=intron_FBgn0016061:3_FBgn0016061:1;Name=side-in;Parent=FBtr0085168;parent_type=mRNA" - - - -	16073	23,203,157 – 23,203,261	+	8	107	86.04	-1.92	0.73	0.827612
11701	dm3.chr3R	23,203,157 – 23,203,261		16074	23,203,157 – 23,203,261	-	8	107	86.04	-2.12	0.73	0.905736
11702	dm3.chr3R	23,210,933 – 23,211,026	- - - intron="intron;ID=intron_FBgn0016061:5_FBgn0016061:4;Name=side-in;Parent=FBtr0085168,FBtr0289998;parent_type=mRNA" - - - -	16075	23,210,933 – 23,211,026	+	9	103	77.45	-0.68	0.85	0.733637
11702	dm3.chr3R	23,210,933 – 23,211,026		16076	23,210,933 – 23,211,026	-	9	103	77.45	-1.36	0.71	0.896131
11703	dm3.chr3R	23,218,513 – 23,218,582	- - CDS="CDS;ID=CDS_FBgn0016061:9_39;Name=side-cds;Parent=FBtr0085168;parent_type=mRNA" - - - - -	16077	23,218,513 – 23,218,582	-	13	77	77.32	-1.26	0.57	0.683303
11704	dm3.chr3R	23,238,594 – 23,238,689	- - - intron="intron;ID=intron_FBgn0016061:17_FBgn0016061:16;Name=side-in;Parent=FBtr0085168,FBtr0289998;parent_type=mRNA" - - - -	16078	23,238,594 – 23,238,689	+	7	113	67.21	-0.95	0.55	0.848845
11704	dm3.chr3R	23,238,594 – 23,238,689		16079	23,238,594 – 23,238,689	-	7	113	67.21	-1.52	0.64	0.991646
11705	dm3.chr3R	23,239,699 – 23,239,791	- - - intron="intron;ID=intron_FBgn0016061:17_FBgn0016061:16;Name=side-in;Parent=FBtr0085168,FBtr0289998;parent_type=mRNA" - - - -	16080	23,239,699 – 23,239,791	+	10	96	79.42	-2.29	0.35	0.512382
11706	dm3.chr3R	23,240,354 – 23,240,461	- - - intron="intron;ID=intron_FBgn0016061:17_FBgn0016061:16;Name=side-in;Parent=FBtr0085168,FBtr0289998;parent_type=mRNA" - - - -	16081	23,240,354 – 23,240,461	-	6	112	69.90	-1.04	0.47	0.540633
11707	dm3.chr3R	23,243,663 – 23,243,782	- - - intron="intron;ID=intron_FBgn0016061:17_FBgn0016061:16;Name=side-in;Parent=FBtr0085168,FBtr0289998;parent_type=mRNA" - - - -	16082	23,243,663 – 23,243,782	+	5	120	94.65	-2.46	0.92	0.978713
11707	dm3.chr3R	23,243,663 – 23,243,782		16083	23,243,663 – 23,243,782	-	5	120	94.65	-3.22	0.90	0.994641
11708	dm3.chr3R	23,249,393 – 23,249,448	- - - - - - - -	16084	23,249,393 – 23,249,448	+	3	55	91.52	-1.58	0.98	0.935848
11709	dm3.chr3R	23,254,555 – 23,254,645	- - - - - - - -	16085	23,254,555 – 23,254,645	-	7	102	72.58	-2.18	0.37	0.786277
11710	dm3.chr3R	23,259,194 – 23,259,249	- - - - - - - -	16086	23,259,194 – 23,259,249	-	7	69	73.77	-1.69	0.49	0.663579
11711	dm3.chr3R	23,266,965 – 23,267,029	- - - - - - - -	16087	23,266,965 – 23,267,029	-	10	65	74.15	-0.90	0.56	0.795040
11712	dm3.chr3R	23,271,313 – 23,271,408	- - - - - - - -	16088	23,271,313 – 23,271,408	-	8	108	62.22	-2.46	0.36	0.995136
11713	dm3.chr3R	23,285,205 – 23,285,307	- - - - - - - -	16089	23,285,205 – 23,285,307	-	10	116	79.59	-1.29	0.84	0.917206
11714	dm3.chr3R	23,288,654 – 23,288,790	- - - - - - - -	16090	23,288,654 – 23,288,762	+	6	112	73.41	-1.48	0.48	0.715566
				16091	23,288,654 – 23,288,762	-	6	112	73.41	-1.10	0.52	0.528041
				16092	23,288,693 – 23,288,790	+	6	107	69.99	-1.29	0.46	0.563398
				16093	23,288,693 – 23,288,790	-	6	107	69.99	-1.39	0.64	0.962474
11715	dm3.chr3R	23,310,727 – 23,310,795	- - - - - - - -	16094	23,310,727 – 23,310,795	-	8	68	74.59	-1.16	0.61	0.793144
11716	dm3.chr3R	23,312,869 – 23,312,959	- - - - - - - -	16095	23,312,869 – 23,312,959	+	12	107	81.67	-1.24	0.70	0.643853
11717	dm3.chr3R	23,317,943 – 23,317,996	- - - - - - - -	16096	23,317,943 – 23,317,996	+	4	53	91.51	-1.65	0.86	0.692363
11718	dm3.chr3R	23,318,870 – 23,318,961	- - - - - - - -	16097	23,318,870 – 23,318,961	+	6	104	60.63	-1.92	0.39	0.982594
11719	dm3.chr3R	23,321,439 – 23,321,545	- - - - - - - -	16098	23,321,439 – 23,321,545	+	10	118	76.44	-1.88	0.45	0.761198
11720	dm3.chr3R	23,322,102 – 23,322,226	- - - - - - - -	16099	23,322,102 – 23,322,213	+	6	119	80.07	-2.37	0.62	0.960400
11720	dm3.chr3R	23,322,102 – 23,322,226	- - - - - - - -	16100	23,322,115 – 23,322,226	+	8	117	65.12	-1.30	0.38	0.664019
11721	dm3.chr3R	23,324,101 – 23,324,228	- - - - - - - -	16101	23,324,101 – 23,324,193	-	7	106	66.70	-1.06	0.43	0.619548
				16102	23,324,131 – 23,324,228	+	7	114	70.51	-0.93	0.58	0.766727
				16103	23,324,131 – 23,324,228	-	7	114	70.51	-1.46	0.54	0.932018
11722	dm3.chr3R	23,325,791 – 23,325,882	- - - - - - - -	16104	23,325,791 – 23,325,882	-	8	107	74.39	-1.23	0.55	0.696641
11723	dm3.chr3R	23,334,423 – 23,334,584	- - - - - - - -	16105	23,334,423 – 23,334,584	+	6	180	69.53	-1.68	0.38	0.580801
11724	dm3.chr3R	23,335,614 – 23,335,732	- - - - - - - -	16106	23,335,614 – 23,335,732	+	8	120	73.36	-2.19	0.32	0.606284
11725	dm3.chr3R	23,336,020 – 23,336,103	- - - - - - - -	16107	23,336,020 – 23,336,103	-	10	92	69.04	-0.52	0.58	0.701028
11726	dm3.chr3R	23,337,619 – 23,337,703	- - - - - - - -	16108	23,337,619 – 23,337,703	+	5	85	90.49	-1.91	0.80	0.726191
11727	dm3.chr3R	23,342,352 – 23,342,432	- - CDS="CDS;ID=CDS_CG13972:1_57;Name=CG13972-cds;Parent=FBtr0085212;parent_type=mRNA" - - - - -	16109	23,342,352 – 23,342,432	+	6	89	73.57	-1.96	0.40	0.621752
11727	dm3.chr3R	23,342,352 – 23,342,432		16110	23,342,352 – 23,342,432	-	6	89	73.57	-1.74	0.48	0.759730
11728	dm3.chr3R	23,344,919 – 23,345,034	- - - - - - - -	16111	23,344,919 – 23,345,034	-	6	117	81.78	-1.38	0.67	0.524204
11729	dm3.chr3R	23,378,190 – 23,378,248	- - - intron="intron;ID=intron_FBgn0004387:9_FBgn0004387:8;Name=Klp98A-in;Parent=FBtr0085211,FBtr0304671;parent_type=mRNA" - - - -	16112	23,378,190 – 23,378,248	-	7	61	69.62	-0.37	0.60	0.568692
11730	dm3.chr3R	23,379,347 – 23,379,486	- - - intron="intron;ID=intron_FBgn0004387:11_FBgn0004387:10;Name=Klp98A-in;Parent=FBtr0085211,FBtr0304671;parent_type=mRNA" - - - -	16113	23,379,347 – 23,379,446	+	6	103	74.47	-1.38	0.61	0.868450
11730	dm3.chr3R	23,379,347 – 23,379,486		16114	23,379,380 – 23,379,486	-	6	111	77.89	-1.47	0.58	0.595236
11731	dm3.chr3R	23,383,039 – 23,383,113	- - - intron="intron;ID=intron_FBgn0004387:12_FBgn0004387:11;Name=Klp98A-in;Parent=FBtr0085211,FBtr0304671;parent_type=mRNA" - - - -	16115	23,383,039 – 23,383,113	+	7	80	70.32	-1.43	0.42	0.695335
11731	dm3.chr3R	23,383,039 – 23,383,113		16116	23,383,039 – 23,383,113	-	7	80	70.32	-1.50	0.48	0.905218
11732	dm3.chr3R	23,394,767 – 23,394,918	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16117	23,394,767 – 23,394,885	-	5	118	92.20	-2.36	0.89	0.968832
11732	dm3.chr3R	23,394,767 – 23,394,918		16118	23,394,803 – 23,394,918	-	6	115	69.83	-1.28	0.62	0.963544
11733	dm3.chr3R	23,395,847 – 23,395,937	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16119	23,395,847 – 23,395,937	+	5	92	87.54	-1.54	0.93	0.916095
11733	dm3.chr3R	23,395,847 – 23,395,937		16120	23,395,847 – 23,395,937	-	5	92	87.54	-1.76	0.82	0.808490
11734	dm3.chr3R	23,396,466 – 23,396,758	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16121	23,396,466 – 23,396,580	+	5	114	96.14	-1.91	0.86	0.709561
				16122	23,396,489 – 23,396,603	+	5	114	96.49	-1.75	0.89	0.713461
				16123	23,396,489 – 23,396,603	-	5	114	96.49	-1.59	0.91	0.693830
				16124	23,396,603 – 23,396,721	+	5	120	77.67	-2.05	0.54	0.808992
				16125	23,396,603 – 23,396,721	-	5	120	77.67	-1.66	0.60	0.694712
				16126	23,396,642 – 23,396,758	+	5	118	75.30	-1.70	0.74	0.964779
				16127	23,396,642 – 23,396,758	-	5	118	75.30	-1.49	0.66	0.864725
11735	dm3.chr3R	23,398,478 – 23,398,532	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16128	23,398,478 – 23,398,532	-	6	54	77.28	-1.39	0.59	0.676913
11736	dm3.chr3R	23,399,855 – 23,399,949	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16129	23,399,855 – 23,399,949	+	5	119	77.43	-1.53	0.68	0.732789
11737	dm3.chr3R	23,400,005 – 23,400,100	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16130	23,400,005 – 23,400,100	-	5	109	75.52	-2.50	0.60	0.989111
11738	dm3.chr3R	23,404,317 – 23,404,422	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16131	23,404,317 – 23,404,422	+	5	115	82.22	-1.69	0.68	0.620040
11739	dm3.chr3R	23,404,635 – 23,404,732	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16132	23,404,635 – 23,404,732	-	4	113	82.54	-1.89	0.72	0.762536
11740	dm3.chr3R	23,405,068 – 23,405,162	- - - intron="intron;ID=intron_FBgn0027492:9_FBgn0027492:8;Name=wdb-in;Parent=FBtr0085204,FBtr0085209;parent_type=mRNA" - - - -	16133	23,405,068 – 23,405,162	+	6	97	72.87	-1.61	0.58	0.922221
11740	dm3.chr3R	23,405,068 – 23,405,162		16134	23,405,068 – 23,405,162	-	6	97	72.87	-1.55	0.56	0.878236
11741	dm3.chr3R	23,420,561 – 23,420,671	- - - - - - - -	16135	23,420,561 – 23,420,671	+	5	111	72.15	-1.00	0.61	0.684376
11742	dm3.chr3R	23,431,275 – 23,431,368	- - - intron="intron;ID=intron_FBgn0039528:8_FBgn0039528:7;Name=dsd-in;Parent=FBtr0301390;parent_type=mRNA" - - - -	16136	23,431,275 – 23,431,368	+	5	93	90.85	-2.40	0.87	0.970494
11742	dm3.chr3R	23,431,275 – 23,431,368		16137	23,431,275 – 23,431,368	-	5	93	90.85	-1.62	0.81	0.514384
11743	dm3.chr3R	23,454,787 – 23,454,879	- - - - - - - -	16138	23,454,787 – 23,454,879	-	7	95	70.80	-1.86	0.34	0.683483
11744	dm3.chr3R	23,468,915 – 23,469,065	- - - intron="intron;ID=intron_CG31057:6_CG31057:7;Name=tau-in;Parent=FBtr0085197;parent_type=mRNA" - - - -	16139	23,468,915 – 23,469,065	+	5	165	71.63	-3.21	0.54	0.999310
11744	dm3.chr3R	23,468,915 – 23,469,065		16140	23,468,915 – 23,469,065	-	5	165	71.63	-2.43	0.54	0.994076
11745	dm3.chr3R	23,487,367 – 23,487,463	- - - - - - - -	16141	23,487,367 – 23,487,463	-	11	106	64.03	-1.04	0.47	0.956683
11746	dm3.chr3R	23,487,940 – 23,488,052	- - - - - - - -	16142	23,487,940 – 23,488,052	+	6	118	78.58	-2.16	0.79	0.989925
11746	dm3.chr3R	23,487,940 – 23,488,052	- - - - - - - -	16143	23,487,940 – 23,488,052	-	6	118	78.58	-2.10	0.64	0.960179
11747	dm3.chr3R	23,489,640 – 23,489,737	- - - intron="intron;ID=intron_FBgn0039536:1_FBgn0039536:2;Name=CG18437-in;Parent=FBtr0273246;parent_type=mRNA" - - - -	16144	23,489,640 – 23,489,737	+	5	97	95.67	-1.43	0.98	0.878392
11748	dm3.chr3R	23,492,437 – 23,492,536	- - - intron="intron;ID=intron_FBgn0039536:9_FBgn0039536:10;Name=CG18437-in;Parent=FBtr0273246;parent_type=mRNA" - - - -	16145	23,492,437 – 23,492,528	+	9	95	78.48	-0.90	0.72	0.616739
11748	dm3.chr3R	23,492,437 – 23,492,536		16146	23,492,445 – 23,492,536	+	12	92	72.15	-0.95	0.70	0.950814
11749	dm3.chr3R	23,501,211 – 23,501,319	- - - intron="intron;ID=intron_FBgn0039536:24_FBgn0039536:25;Name=CG18437-in;Parent=FBtr0273246;parent_type=mRNA" - - - -	16147	23,501,211 – 23,501,319	+	3	119	81.50	-1.88	0.69	0.596777
11750	dm3.chr3R	23,501,805 – 23,501,918	- - CDS="CDS;ID=CDS_FBgn0039536:26_102;Name=CG18437-cds;Parent=FBtr0273246;parent_type=mRNA" - - - - -	16148	23,501,805 – 23,501,918	-	13	120	81.45	-2.00	0.45	0.523393
11751	dm3.chr3R	23,513,509 – 23,513,601	- - CDS="CDS;ID=CDS_CG31055:2_74;Name=CG31055-cds;Parent=FBtr0085242;parent_type=mRNA" - - - - -	16149	23,513,509 – 23,513,601	+	8	98	59.76	-2.35	0.38	0.998489
11752	dm3.chr3R	23,524,507 – 23,524,627	- - - intron="intron;ID=intron_CG12876:3_CG12876:4;Name=ALiX-in;Parent=FBtr0085241;parent_type=mRNA" - - - -	16150	23,524,507 – 23,524,627	+	3	120	75.83	-2.07	0.54	0.670228
11753	dm3.chr3R	23,539,903 – 23,539,999	- - - - - - - -	16151	23,539,903 – 23,539,999	+	11	102	90.54	-0.16	1.09	0.710221
11754	dm3.chr3R	23,542,750 – 23,542,878	- - - - - - - -	16152	23,542,750 – 23,542,840	+	8	114	75.18	-1.14	0.71	0.753012
11754	dm3.chr3R	23,542,750 – 23,542,878	- - - - - - - -	16153	23,542,769 – 23,542,878	+	12	120	88.30	-1.80	0.74	0.676595
11755	dm3.chr3R	23,546,130 – 23,546,186	- - - - - - - -	16154	23,546,130 – 23,546,186	+	3	56	83.93	-3.04	0.86	0.995785
11755	dm3.chr3R	23,546,130 – 23,546,186	- - - - - - - -	16155	23,546,130 – 23,546,186	-	3	56	83.93	-2.49	0.86	0.985412
11756	dm3.chr3R	23,554,460 – 23,554,573	- - - - - - - -	16156	23,554,460 – 23,554,573	-	3	113	52.99	-1.56	0.44	0.955109
11757	dm3.chr3R	23,572,473 – 23,572,605	- - CDS="CDS;ID=CDS_FBgn0005659:5_200;Name=Ets98B-cds;Parent=FBtr0085224;parent_type=mRNA" - - - - -	16157	23,572,473 – 23,572,570	+	14	119	67.36	-1.30	0.54	0.973140
11757	dm3.chr3R	23,572,473 – 23,572,605		16158	23,572,510 – 23,572,605	+	15	116	76.78	-1.97	0.49	0.872190
11758	dm3.chr3R	23,578,925 – 23,579,034	- - - - - - - -	16159	23,578,925 – 23,579,034	+	7	117	88.74	-2.37	0.64	0.719785
11759	dm3.chr3R	23,586,823 – 23,586,915	- - - - - - - -	16160	23,586,823 – 23,586,915	+	12	112	72.06	-1.37	0.48	0.811829
11760	dm3.chr3R	23,588,211 – 23,588,319	- - - - - - - -	16161	23,588,211 – 23,588,319	-	4	114	84.37	-1.75	0.76	0.728362
11761	dm3.chr3R	23,596,921 – 23,597,017	- - - intron="intron;ID=intron_FBgn0085382:3_FBgn0085382:2;Name=CG34353-in;Parent=FBtr0112563;parent_type=mRNA" - - - -	16162	23,596,921 – 23,597,017	+	12	112	74.57	-2.12	0.39	0.848797
11761	dm3.chr3R	23,596,921 – 23,597,017		16163	23,596,921 – 23,597,017	-	12	112	74.57	-3.51	0.59	0.999760
11762	dm3.chr3R	23,597,202 – 23,597,295	- - - intron="intron;ID=intron_FBgn0085382:3_FBgn0085382:2;Name=CG34353-in;Parent=FBtr0112563;parent_type=mRNA" - - - -	16164	23,597,202 – 23,597,295	+	7	98	81.27	-2.69	0.63	0.980688
11763	dm3.chr3R	23,601,566 – 23,601,673	- - - intron="intron;ID=intron_FBgn0085382:3_FBgn0085382:2;Name=CG34353-in;Parent=FBtr0112563;parent_type=mRNA" - - - -	16165	23,601,566 – 23,601,673	+	7	112	74.10	-2.63	0.46	0.982666
11763	dm3.chr3R	23,601,566 – 23,601,673		16166	23,601,566 – 23,601,673	-	7	112	74.10	-2.46	0.45	0.963536
11764	dm3.chr3R	23,601,888 – 23,601,980	- - - intron="intron;ID=intron_FBgn0085382:3_FBgn0085382:2;Name=CG34353-in;Parent=FBtr0112563;parent_type=mRNA" - - - -	16167	23,601,888 – 23,601,980	+	6	122	61.53	-1.24	0.51	0.936814
11765	dm3.chr3R	23,610,109 – 23,610,199	- - - intron="intron;ID=intron_FBgn0085382:6_FBgn0085382:5;Name=CG34353-in;Parent=FBtr0112563,FBtr0305292;parent_type=mRNA" - - - -	16168	23,610,109 – 23,610,199	+	5	105	77.03	-2.79	0.77	0.997244
11765	dm3.chr3R	23,610,109 – 23,610,199		16169	23,610,109 – 23,610,199	-	5	105	77.03	-3.00	0.68	0.997441
11766	dm3.chr3R	23,626,734 – 23,626,847	- - - intron="intron;ID=intron_FBgn0085382:10_FBgn0085382:9;Name=CG34353-in;Parent=FBtr0112563,FBtr0305292;parent_type=mRNA" - - - -	16170	23,626,734 – 23,626,847	+	11	115	93.86	-2.52	0.73	0.839874
11767	dm3.chr3R	23,630,613 – 23,630,705	- - - intron="intron;ID=intron_FBgn0085382:11_FBgn0085382:10;Name=CG34353-in;Parent=FBtr0112563,FBtr0305292;parent_type=mRNA" - - - -	16171	23,630,613 – 23,630,705	+	12	114	63.53	-1.65	0.26	0.576265
11768	dm3.chr3R	23,634,521 – 23,634,619	- - - intron="intron;ID=intron_FBgn0085382:11_FBgn0085382:10;Name=CG34353-in;Parent=FBtr0112563,FBtr0305292;parent_type=mRNA" - - - -	16172	23,634,521 – 23,634,619	-	12	108	81.50	-1.32	0.75	0.783339
11769	dm3.chr3R	23,636,338 – 23,636,437	- - - intron="intron;ID=intron_FBgn0085382:11_FBgn0085382:10;Name=CG34353-in;Parent=FBtr0112563,FBtr0305292;parent_type=mRNA" - - - -	16173	23,636,338 – 23,636,437	-	5	116	76.15	-1.39	0.59	0.505823
11770	dm3.chr3R	23,648,545 – 23,648,673	- - - intron="intron;ID=intron_FBgn0085382:11_FBgn0085382:10;Name=CG34353-in;Parent=FBtr0112563,FBtr0305292;parent_type=mRNA" - - - -	16174	23,648,545 – 23,648,656	-	12	120	93.81	-1.93	0.87	0.864062
				16175	23,648,576 – 23,648,673	+	11	117	88.94	-1.92	0.89	0.956249
				16176	23,648,576 – 23,648,673	-	11	117	88.94	-2.05	0.86	0.956516
11771	dm3.chr3R	23,653,671 – 23,653,761	- - - intron="intron;ID=intron_FBgn0085382:11_FBgn0085382:10;Name=CG34353-in;Parent=FBtr0112563,FBtr0305292;parent_type=mRNA" - - - -	16177	23,653,671 – 23,653,761	-	5	91	99.12	-1.35	1.00	0.850942
11772	dm3.chr3R	23,657,032 – 23,657,124	- - - intron="intron;ID=intron_FBgn0085382:11_FBgn0085382:10;Name=CG34353-in;Parent=FBtr0112563,FBtr0305292;parent_type=mRNA" - - - -	16178	23,657,032 – 23,657,124	+	6	94	81.45	-1.54	0.65	0.575483
11773	dm3.chr3R	23,659,058 – 23,659,151	- - - intron="intron;ID=intron_FBgn0085382:11_FBgn0085382:10;Name=CG34353-in;Parent=FBtr0112563,FBtr0305292;parent_type=mRNA" - - - -	16179	23,659,058 – 23,659,151	+	12	116	84.67	-2.03	0.65	0.769186
11774	dm3.chr3R	23,664,375 – 23,664,480	- - - intron="intron;ID=intron_FBgn0085382:12_FBgn0085382:11;Name=CG34353-in;Parent=FBtr0112563,FBtr0305292;parent_type=mRNA" - - - -	16180	23,664,375 – 23,664,480	+	8	116	67.48	-2.08	0.31	0.813114
11775	dm3.chr3R	23,681,131 – 23,681,226	- - - - - - - -	16181	23,681,131 – 23,681,226	+	4	95	87.41	-3.12	0.75	0.988991
11775	dm3.chr3R	23,681,131 – 23,681,226	- - - - - - - -	16182	23,681,131 – 23,681,226	-	4	95	87.41	-3.75	0.78	0.997744
11776	dm3.chr3R	23,721,573 – 23,721,673	- - - intron="intron;ID=intron_FBgn0085382:13_FBgn0085382:12;Name=CG34353-in;Parent=FBtr0112563,FBtr0305292;parent_type=mRNA" - - - -	16183	23,721,573 – 23,721,673	+	9	112	75.94	-1.15	0.63	0.652062
11776	dm3.chr3R	23,721,573 – 23,721,673		16184	23,721,573 – 23,721,673	-	9	112	75.94	-2.00	0.45	0.755994
11777	dm3.chr3R	23,735,276 – 23,735,362	- - - - - - - -	16185	23,735,276 – 23,735,362	-	12	93	88.72	-1.84	0.93	0.967835
11778	dm3.chr3R	23,748,528 – 23,748,677	- - CDS="CDS;ID=CDS_CG5502:1_43;Name=RpL4-cds;Parent=FBtr0085248;parent_type=mRNA" - - - - -	16186	23,748,528 – 23,748,639	+	12	120	87.02	-1.55	0.79	0.707472
11778	dm3.chr3R	23,748,528 – 23,748,677		16187	23,748,559 – 23,748,677	+	12	120	80.92	-1.51	0.65	0.802668
11779	dm3.chr3R	23,749,210 – 23,749,330	- - CDS="CDS;ID=CDS_CG5502:3_43;Name=RpL4-cds;Parent=FBtr0085248;parent_type=mRNA" - - - - -	16188	23,749,210 – 23,749,330	+	15	120	83.51	-1.64	0.55	0.525256
11780	dm3.chr3R	23,749,599 – 23,749,786	FBnoncoding="snoRNA;ID=FBtr0113586;Name=snoRNA:Or-aca3-RA;Parent=FBgn0082923;Dbxref=FlyBase_Annotation_IDs:CR34617-RA,REFSEQ:NR_003905;score_text=Weakly" - - intron="intron;ID=intron_CG5502:3_CG5502:4;Name=RpL4-in;Parent=FBtr0085248;parent_type=mRNA" - - - -	16189	23,749,599 – 23,749,693	+	9	115	55.89	-2.41	0.49	0.999735
11780	dm3.chr3R	23,749,599 – 23,749,786		16190	23,749,693 – 23,749,786	-	12	119	60.33	-1.23	0.45	0.974828
11781	dm3.chr3R	23,767,908 – 23,768,032	- - - intron="intron;ID=intron_FBgn0039560:4_FBgn0039560:6;Name=CG5514-in;Parent=FBtr0301143;parent_type=mRNA" - - - -	16191	23,767,908 – 23,768,032	+	6	126	67.74	-1.11	0.44	0.615457
11782	dm3.chr3R	23,796,277 – 23,796,378	- - - intron="intron;ID=intron_FBgn0003890:6_FBgn0003890:5;Name=betaTub97EF-in;Parent=FBtr0085261,FBtr0300611;parent_type=mRNA" - - - -	16192	23,796,277 – 23,796,378	+	5	101	79.98	-2.73	0.58	0.979105
11782	dm3.chr3R	23,796,277 – 23,796,378		16193	23,796,277 – 23,796,378	-	5	101	79.98	-2.35	0.50	0.803780
11783	dm3.chr3R	23,799,340 – 23,799,443	- - - intron="intron;ID=intron_FBgn0003890:7_FBgn0003890:6;Name=betaTub97EF-in;Parent=FBtr0085261,FBtr0300611;parent_type=mRNA" - - - -	16194	23,799,340 – 23,799,443	-	5	107	84.23	-2.59	0.59	0.900595
11784	dm3.chr3R	23,807,240 – 23,807,302	- - - intron="intron;ID=intron_FBgn0003890:8_FBgn0003890:7;Name=betaTub97EF-in;Parent=FBtr0085261,FBtr0300611;parent_type=mRNA" - - - -	16195	23,807,240 – 23,807,302	+	6	77	70.74	-1.74	0.52	0.903023
11784	dm3.chr3R	23,807,240 – 23,807,302		16196	23,807,240 – 23,807,302	-	6	77	70.74	-2.58	0.54	0.995349
11785	dm3.chr3R	23,812,754 – 23,812,820	- - - intron="intron;ID=intron_FBgn0003890:8_FBgn0003890:7;Name=betaTub97EF-in;Parent=FBtr0085261,FBtr0300611;parent_type=mRNA" - - - -	16197	23,812,754 – 23,812,820	-	6	66	82.83	-2.02	0.57	0.649298
11786	dm3.chr3R	23,818,738 – 23,818,870	- - - - - - - -	16198	23,818,738 – 23,818,838	-	11	109	89.15	-1.92	0.70	0.587247
				16199	23,818,777 – 23,818,870	+	8	99	74.57	-1.38	0.68	0.910993
				16200	23,818,777 – 23,818,870	-	8	99	74.57	-1.61	0.64	0.938243
11787	dm3.chr3R	23,823,336 – 23,823,441	- - - - - - - -	16201	23,823,336 – 23,823,441	+	11	115	93.09	-1.99	0.81	0.746875
11787	dm3.chr3R	23,823,336 – 23,823,441	- - - - - - - -	16202	23,823,336 – 23,823,441	-	11	115	93.09	-2.45	0.73	0.797711
11788	dm3.chr3R	23,825,539 – 23,825,645	- - - - - - - -	16203	23,825,539 – 23,825,641	+	12	115	86.98	-2.51	0.61	0.873276
11788	dm3.chr3R	23,825,539 – 23,825,645	- - - - - - - -	16204	23,825,543 – 23,825,645	+	12	115	86.71	-1.91	0.69	0.727045
11789	dm3.chr3R	23,830,084 – 23,830,228	- - - - - - - -	16205	23,830,084 – 23,830,193	-	12	115	75.61	-1.86	0.53	0.960903
11789	dm3.chr3R	23,830,084 – 23,830,228	- - - - - - - -	16206	23,830,114 – 23,830,228	-	12	119	84.22	-2.68	0.62	0.980099
11790	dm3.chr3R	23,831,591 – 23,831,691	- - - - - - - -	16207	23,831,591 – 23,831,691	-	7	110	74.06	-2.34	0.41	0.910956
11791	dm3.chr3R	23,835,287 – 23,835,386	- - - - - - - -	16208	23,835,287 – 23,835,386	+	12	117	89.96	-1.82	0.89	0.932147
11792	dm3.chr3R	23,839,430 – 23,839,530	- - - - - - - -	16209	23,839,430 – 23,839,530	+	11	108	79.54	-1.25	0.73	0.862907
11793	dm3.chr3R	23,845,678 – 23,845,867	- - - - - - - -	16210	23,845,678 – 23,845,769	+	7	106	72.97	-1.11	0.53	0.571449
11793	dm3.chr3R	23,845,678 – 23,845,867	- - - - - - - -	16211	23,845,769 – 23,845,867	-	7	104	77.23	-1.75	0.50	0.735082
11794	dm3.chr3R	23,858,203 – 23,858,338	- - - intron="intron;ID=intron_FBgn0085391:3_FBgn0085391:4;Name=CG34362-in;Parent=FBtr0112582,FBtr0301397;parent_type=mRNA" - - - -	16212	23,858,203 – 23,858,306	+	6	110	77.76	-2.39	0.54	0.949326
				16213	23,858,203 – 23,858,306	-	6	110	77.76	-1.99	0.55	0.838771
				16214	23,858,233 – 23,858,338	-	6	105	77.45	-2.27	0.43	0.795724
11795	dm3.chr3R	23,901,910 – 23,902,006	- - - intron="intron;ID=intron_FBgn0085391:7_FBgn0085391:8;Name=CG34362-in;Parent=FBtr0112582,FBtr0112583,FBtr0301397;parent_type=mRNA" - - - -	16215	23,901,910 – 23,902,006	+	7	116	73.76	-1.36	0.56	0.806038
11796	dm3.chr3R	23,904,015 – 23,904,068	- - - intron="intron;ID=intron_FBgn0085391:8_FBgn0085391:9;Name=CG34362-in;Parent=FBtr0112582,FBtr0112583,FBtr0301397;parent_type=mRNA" - - - -	16216	23,904,015 – 23,904,068	-	5	55	67.09	-0.62	0.59	0.723656
11797	dm3.chr3R	23,906,735 – 23,906,828	- - - intron="intron;ID=intron_FBgn0085391:9_FBgn0085391:10;Name=CG34362-in;Parent=FBtr0112582,FBtr0112583,FBtr0301397;parent_type=mRNA" - - - -	16217	23,906,735 – 23,906,828	+	12	105	74.64	-1.27	0.45	0.500000
11798	dm3.chr3R	23,908,303 – 23,908,418	- - - intron="intron;ID=intron_FBgn0085391:9_FBgn0085391:10;Name=CG34362-in;Parent=FBtr0112582,FBtr0112583,FBtr0301397;parent_type=mRNA" - - - -	16218	23,908,303 – 23,908,405	-	7	102	79.57	-1.99	0.54	0.827586
11798	dm3.chr3R	23,908,303 – 23,908,418		16219	23,908,325 – 23,908,418	-	7	99	82.16	-1.35	0.69	0.536823
11799	dm3.chr3R	23,909,113 – 23,909,212	- - CDS="CDS;ID=CDS_FBgn0085391:11_184;Name=CG34362-cds;Parent=FBtr0301397;parent_type=mRNA" - - - - -	16220	23,909,113 – 23,909,212	-	7	102	78.12	-1.64	0.53	0.589985
11800	dm3.chr3R	23,918,860 – 23,918,954	- - - - - - - -	16221	23,918,860 – 23,918,954	-	11	95	93.46	-1.35	0.87	0.509394
11801	dm3.chr3R	23,920,940 – 23,921,045	- - - - - - - -	16222	23,920,940 – 23,921,045	+	8	115	76.83	-1.15	0.70	0.749438
11802	dm3.chr3R	23,921,063 – 23,921,171	- - - - - - - -	16223	23,921,063 – 23,921,171	+	6	116	80.98	-2.06	0.55	0.740534
11802	dm3.chr3R	23,921,063 – 23,921,171	- - - - - - - -	16224	23,921,063 – 23,921,171	-	6	116	80.98	-2.30	0.58	0.914945
11803	dm3.chr3R	23,923,113 – 23,923,203	- - - - - - - -	16225	23,923,113 – 23,923,203	-	11	96	78.28	-1.67	0.46	0.557096
11804	dm3.chr3R	23,936,832 – 23,936,938	- - - - - - - -	16226	23,936,832 – 23,936,938	-	5	107	72.39	-2.53	0.62	0.996408
11805	dm3.chr3R	23,939,532 – 23,939,655	- - - - - - - -	16227	23,939,532 – 23,939,622	-	12	111	71.19	-0.47	0.64	0.734399
11805	dm3.chr3R	23,939,532 – 23,939,655	- - - - - - - -	16228	23,939,552 – 23,939,655	-	12	115	85.29	-1.96	0.71	0.887006
11806	dm3.chr3R	23,943,810 – 23,943,918	- - - - - - - -	16229	23,943,810 – 23,943,918	-	7	128	64.50	-1.93	0.32	0.783204
11807	dm3.chr3R	23,949,788 – 23,949,891	- - - - - - - -	16230	23,949,788 – 23,949,891	+	6	112	69.76	-1.50	0.48	0.855513
11807	dm3.chr3R	23,949,788 – 23,949,891	- - - - - - - -	16231	23,949,788 – 23,949,891	-	6	112	69.76	-1.79	0.45	0.912047
11808	dm3.chr3R	23,952,545 – 23,952,636	- - - - - - - -	16232	23,952,545 – 23,952,636	+	12	104	74.88	-2.23	0.65	0.996852
11809	dm3.chr3R	23,954,396 – 23,954,499	- - - - - - - -	16233	23,954,396 – 23,954,499	+	11	115	78.03	-1.40	0.56	0.651180
11810	dm3.chr3R	23,977,992 – 23,978,094	- - - intron="intron;ID=intron_FBgn0085383:5_FBgn0085383:6;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916;parent_type=mRNA" - - - -	16234	23,977,992 – 23,978,094	-	9	104	93.15	-2.46	0.68	0.655430
11811	dm3.chr3R	23,980,764 – 23,980,874	- - - intron="intron;ID=intron_FBgn0085383:5_FBgn0085383:6;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916;parent_type=mRNA" - - - -	16235	23,980,764 – 23,980,874	-	12	120	83.34	-1.44	0.74	0.809673
11812	dm3.chr3R	23,982,985 – 23,983,089	- - - intron="intron;ID=intron_FBgn0085383:5_FBgn0085383:6;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916;parent_type=mRNA" - - - -	16236	23,982,985 – 23,983,089	+	7	111	95.24	-1.09	0.95	0.580484
11813	dm3.chr3R	23,983,399 – 23,983,491	- - - intron="intron;ID=intron_FBgn0085383:5_FBgn0085383:6;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916;parent_type=mRNA" - - - -	16237	23,983,399 – 23,983,491	+	4	92	91.85	-1.62	0.97	0.937741
11814	dm3.chr3R	23,987,350 – 23,987,447	- - - intron="intron;ID=intron_FBgn0085383:5_FBgn0085383:6;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916;parent_type=mRNA" - - - -	16238	23,987,350 – 23,987,447	-	12	107	81.87	-2.74	0.55	0.985325
11815	dm3.chr3R	23,989,539 – 23,989,649	- - - intron="intron;ID=intron_FBgn0085383:5_FBgn0085383:6;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916;parent_type=mRNA" - - - -	16239	23,989,539 – 23,989,649	+	10	114	84.10	-2.00	0.61	0.816555
11816	dm3.chr3R	23,998,397 – 23,998,491	- - - intron="intron;ID=intron_FBgn0085383:5_FBgn0085383:6;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916;parent_type=mRNA" - - - -	16240	23,998,397 – 23,998,491	+	10	110	61.75	-2.83	0.14	0.846940
11817	dm3.chr3R	24,006,555 – 24,006,681	- - - intron="intron;ID=intron_FBgn0085383:5_FBgn0085383:6;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916;parent_type=mRNA" - - - -	16241	24,006,555 – 24,006,681	+	3	128	48.77	-1.28	0.41	0.863055
11818	dm3.chr3R	24,016,590 – 24,016,683	- - - intron="intron;ID=intron_FBgn0085383:5_FBgn0085383:6;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916;parent_type=mRNA" - - - -	16242	24,016,590 – 24,016,683	+	10	102	74.48	-1.79	0.55	0.977373
11819	dm3.chr3R	24,046,388 – 24,046,479	- - - intron="intron;ID=intron_FBgn0085383:6_FBgn0085383:7;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916,FBtr0304917;parent_type=mRNA" - - - -	16243	24,046,388 – 24,046,479	-	9	98	79.06	-2.03	0.75	0.983675
11820	dm3.chr3R	24,047,613 – 24,047,719	- - - intron="intron;ID=intron_FBgn0085383:6_FBgn0085383:7;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916,FBtr0304917;parent_type=mRNA" - - - -	16244	24,047,613 – 24,047,719	+	11	119	91.48	-1.82	0.78	0.606145
11821	dm3.chr3R	24,059,798 – 24,059,891	- - - intron="intron;ID=intron_FBgn0085383:7_FBgn0085383:8;Name=CG34354-in;Parent=FBtr0112564,FBtr0304916,FBtr0304917;parent_type=mRNA" - - - -	16245	24,059,798 – 24,059,891	+	5	94	69.91	-0.46	0.63	0.500000
11822	dm3.chr3R	24,077,098 – 24,077,194	- - - - - - - -	16246	24,077,098 – 24,077,194	+	10	105	69.86	-1.13	0.55	0.775816
11823	dm3.chr3R	24,085,379 – 24,085,472	- - - - - - - -	16247	24,085,379 – 24,085,472	+	6	97	84.35	-3.27	0.66	0.994802
11824	dm3.chr3R	24,094,341 – 24,094,441	- - - - - - - -	16248	24,094,341 – 24,094,441	-	10	106	61.72	-2.02	0.28	0.955489
11825	dm3.chr3R	24,095,383 – 24,095,482	- - - - - - - -	16249	24,095,383 – 24,095,482	-	11	114	64.76	-1.84	0.32	0.909601
11826	dm3.chr3R	24,099,547 – 24,099,678	- - - - - - - -	16250	24,099,547 – 24,099,653	-	7	115	79.08	-1.78	0.59	0.816418
11826	dm3.chr3R	24,099,547 – 24,099,678	- - - - - - - -	16251	24,099,587 – 24,099,678	-	7	112	69.76	-1.93	0.62	0.993955
11827	dm3.chr3R	24,102,154 – 24,102,254	- - - - - - - -	16252	24,102,154 – 24,102,252	+	12	121	77.23	-3.09	0.29	0.849323
				16253	24,102,156 – 24,102,254	+	11	119	79.29	-2.62	0.56	0.983751
				16254	24,102,156 – 24,102,254	-	11	119	79.29	-2.77	0.55	0.988646
11828	dm3.chr3R	24,105,309 – 24,105,429	- - - - - - - -	16255	24,105,309 – 24,105,429	+	12	120	94.97	-1.72	0.97	0.943214
11829	dm3.chr3R	24,111,446 – 24,111,515	- - - - - - - -	16256	24,111,446 – 24,111,515	+	6	69	77.64	-1.21	0.64	0.639011
11830	dm3.chr3R	24,117,864 – 24,118,100	- - CDS="CDS;ID=CDS_FBgn0002865:1_230;Name=Mst98Ca-cds;Parent=FBtr0085277;parent_type=mRNA" - - - - -	16257	24,117,864 – 24,117,959	+	9	105	80.81	-1.74	0.55	0.544985
				16258	24,117,864 – 24,117,959	-	9	105	80.81	-2.21	0.54	0.864346
				16259	24,117,959 – 24,118,060	-	12	110	68.05	-1.47	0.44	0.933990
				16260	24,117,995 – 24,118,100	-	12	105	78.94	-1.60	0.56	0.831680
11831	dm3.chr3R	24,121,148 – 24,121,210	- - - - - - - -	16261	24,121,148 – 24,121,210	+	10	72	67.28	-2.10	0.40	0.983352
11831	dm3.chr3R	24,121,148 – 24,121,210	- - - - - - - -	16262	24,121,148 – 24,121,210	-	10	72	67.28	-1.40	0.38	0.732718
11832	dm3.chr3R	24,128,566 – 24,128,664	- - - - - - - -	16263	24,128,566 – 24,128,664	-	6	104	78.50	-1.66	0.67	0.899879
11833	dm3.chr3R	24,138,526 – 24,138,623	- - - - - - - -	16264	24,138,526 – 24,138,623	-	9	97	77.19	-1.15	0.62	0.708547
11834	dm3.chr3R	24,153,402 – 24,153,490	- - - - - - - -	16265	24,153,402 – 24,153,490	-	5	93	85.05	-1.60	0.73	0.562306
11835	dm3.chr3R	24,157,891 – 24,158,005	- - - - - - - -	16266	24,157,891 – 24,158,005	+	6	115	65.37	-1.55	0.34	0.666938
11836	dm3.chr3R	24,160,831 – 24,160,958	- - - intron="intron;ID=intron_FBgn0261618:11_FBgn0261618:10;Name=larp-in;Parent=FBtr0306390;parent_type=mRNA" - - - -	16267	24,160,831 – 24,160,944	+	6	120	73.58	-3.52	0.59	0.999642
				16268	24,160,831 – 24,160,944	-	6	120	73.58	-3.15	0.47	0.997405
				16269	24,160,839 – 24,160,958	+	6	120	75.42	-3.17	0.63	0.999238
				16270	24,160,839 – 24,160,958	-	6	120	75.42	-2.89	0.48	0.993402
11837	dm3.chr3R	24,160,975 – 24,161,025	- - - - - - - -	16271	24,160,975 – 24,161,025	-	4	51	94.06	-3.22	0.95	0.996796
11838	dm3.chr3R	24,167,642 – 24,167,733	- - - - - - - -	16272	24,167,642 – 24,167,733	+	6	103	74.28	-1.06	0.63	0.599984
11839	dm3.chr3R	24,176,168 – 24,176,311	- - - - - - - -	16273	24,176,168 – 24,176,286	+	12	120	87.37	-2.08	0.74	0.888714
11839	dm3.chr3R	24,176,168 – 24,176,311	- - - - - - - -	16274	24,176,206 – 24,176,311	+	11	112	93.24	-1.77	0.87	0.810765
11840	dm3.chr3R	24,176,584 – 24,176,654	- - - - - - - -	16275	24,176,584 – 24,176,654	+	7	70	69.33	-1.34	0.58	0.973756
11841	dm3.chr3R	24,180,356 – 24,180,449	- - - - - - - -	16276	24,180,356 – 24,180,449	-	11	107	80.90	-1.62	0.59	0.696229
11842	dm3.chr3R	24,189,538 – 24,189,645	- - - - - - - -	16277	24,189,538 – 24,189,645	+	12	118	83.69	-2.56	0.44	0.681288
11843	dm3.chr3R	24,202,603 – 24,202,659	- - - - - - - -	16278	24,202,603 – 24,202,659	-	9	56	86.34	-1.71	0.72	0.722965
11844	dm3.chr3R	24,203,144 – 24,203,235	- - - - - - - -	16279	24,203,144 – 24,203,235	+	11	100	87.15	-1.36	0.87	0.754381
11845	dm3.chr3R	24,203,746 – 24,203,863	- - - - - - - -	16280	24,203,746 – 24,203,863	+	12	118	70.70	-1.45	0.35	0.519099
11846	dm3.chr3R	24,206,125 – 24,206,224	- - - - - - - -	16281	24,206,125 – 24,206,224	+	12	110	74.49	-0.51	0.66	0.620708
11847	dm3.chr3R	24,208,034 – 24,208,138	- - - - - - - -	16282	24,208,034 – 24,208,136	-	8	104	83.84	-2.33	0.65	0.925904
				16283	24,208,035 – 24,208,138	+	8	103	83.54	-1.25	0.75	0.509544
				16284	24,208,035 – 24,208,138	-	8	103	83.54	-2.45	0.84	0.991461
11848	dm3.chr3R	24,211,752 – 24,211,923	- - - - - - - -	16285	24,211,752 – 24,211,849	-	11	99	97.58	-1.19	0.99	0.781043
11848	dm3.chr3R	24,211,752 – 24,211,923	- - - - - - - -	16286	24,211,809 – 24,211,923	-	9	120	78.77	-1.51	0.64	0.732862
11849	dm3.chr3R	24,212,192 – 24,212,294	- - - - - - - -	16287	24,212,192 – 24,212,294	-	6	104	88.96	-2.10	0.71	0.724282
11850	dm3.chr3R	24,213,245 – 24,213,301	- - - - - - - -	16288	24,213,245 – 24,213,301	-	3	59	86.44	-1.13	0.94	0.738867
11851	dm3.chr3R	24,216,481 – 24,216,558	- - - - - - - -	16289	24,216,481 – 24,216,558	+	12	84	85.45	-1.77	0.65	0.647461
11851	dm3.chr3R	24,216,481 – 24,216,558	- - - - - - - -	16290	24,216,481 – 24,216,558	-	12	84	85.45	-1.47	0.78	0.774618
11852	dm3.chr3R	24,217,163 – 24,217,254	- - - - - - - -	16291	24,217,163 – 24,217,254	-	8	119	75.45	-2.74	0.33	0.741790
11853	dm3.chr3R	24,218,449 – 24,218,540	- - - - - - - -	16292	24,218,449 – 24,218,540	+	8	93	72.37	-1.46	0.42	0.606448
11854	dm3.chr3R	24,220,479 – 24,220,575	- - - - - - - -	16293	24,220,479 – 24,220,575	-	10	96	85.64	-1.16	0.84	0.678455
11855	dm3.chr3R	24,224,766 – 24,224,866	- - - - - - - -	16294	24,224,766 – 24,224,866	+	10	102	85.23	-2.16	0.65	0.902273
11855	dm3.chr3R	24,224,766 – 24,224,866	- - - - - - - -	16295	24,224,766 – 24,224,866	-	10	102	85.23	-1.95	0.83	0.967954
11856	dm3.chr3R	24,229,568 – 24,229,660	- - - - - - - -	16296	24,229,568 – 24,229,660	+	4	93	72.10	-0.95	0.73	0.736035
11857	dm3.chr3R	24,238,990 – 24,239,158	- - - - - - - -	16297	24,238,990 – 24,239,080	-	7	100	70.76	-2.14	0.44	0.967181
11857	dm3.chr3R	24,238,990 – 24,239,158	- - - - - - - -	16298	24,239,058 – 24,239,158	-	9	115	69.59	-1.17	0.47	0.731440
11858	dm3.chr3R	24,246,932 – 24,247,018	- - - intron="intron;ID=intron_CG14064:1_CG14064:2;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16299	24,246,932 – 24,247,018	+	7	90	71.33	-0.77	0.63	0.762017
11859	dm3.chr3R	24,250,841 – 24,250,934	- - - intron="intron;ID=intron_CG14064:1_CG14064:2;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16300	24,250,841 – 24,250,934	+	6	100	79.73	-1.20	0.74	0.664534
11859	dm3.chr3R	24,250,841 – 24,250,934		16301	24,250,841 – 24,250,934	-	6	100	79.73	-1.73	0.79	0.951917
11860	dm3.chr3R	24,252,524 – 24,252,617	- - - intron="intron;ID=intron_CG14064:1_CG14064:2;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16302	24,252,524 – 24,252,617	+	6	95	89.54	-1.81	0.83	0.828744
11861	dm3.chr3R	24,254,592 – 24,254,692	- - - intron="intron;ID=intron_CG14064:1_CG14064:2;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16303	24,254,592 – 24,254,692	-	10	113	75.51	-2.25	0.42	0.863729
11862	dm3.chr3R	24,264,195 – 24,264,297	- - - intron="intron;ID=intron_CG14064:1_CG14064:2;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16304	24,264,195 – 24,264,297	+	12	120	84.10	-1.60	0.66	0.599612
11863	dm3.chr3R	24,266,944 – 24,267,035	- - - intron="intron;ID=intron_CG14064:1_CG14064:2;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16305	24,266,944 – 24,267,035	+	12	113	66.83	-1.40	0.40	0.866050
11863	dm3.chr3R	24,266,944 – 24,267,035		16306	24,266,944 – 24,267,035	-	12	113	66.83	-2.02	0.30	0.874303
11864	dm3.chr3R	24,267,051 – 24,267,146	- - - intron="intron;ID=intron_CG14064:1_CG14064:2;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16307	24,267,051 – 24,267,146	-	10	108	72.45	-1.59	0.46	0.858958
11865	dm3.chr3R	24,267,404 – 24,267,567	- - - intron="intron;ID=intron_CG14064:1_CG14064:2;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16308	24,267,404 – 24,267,504	+	9	107	70.32	-1.05	0.46	0.586633
				16309	24,267,428 – 24,267,537	+	6	110	81.77	-2.12	0.74	0.968865
				16310	24,267,465 – 24,267,567	+	6	113	76.76	-1.67	0.53	0.613886
11866	dm3.chr3R	24,272,965 – 24,273,066	- - - intron="intron;ID=intron_CG14064:2_CG14064:3;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16311	24,272,965 – 24,273,066	-	8	117	77.50	-0.82	0.74	0.617532
11867	dm3.chr3R	24,278,860 – 24,278,953	- - - intron="intron;ID=intron_CG14064:2_CG14064:3;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16312	24,278,860 – 24,278,953	+	8	111	72.59	-2.39	0.39	0.932517
11868	dm3.chr3R	24,280,042 – 24,280,151	- - - intron="intron;ID=intron_CG14064:2_CG14064:3;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16313	24,280,042 – 24,280,151	-	12	120	89.43	-2.26	0.67	0.753893
11869	dm3.chr3R	24,284,462 – 24,284,565	- - - intron="intron;ID=intron_CG14064:2_CG14064:3;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16314	24,284,462 – 24,284,565	-	12	115	72.23	-1.09	0.47	0.617631
11870	dm3.chr3R	24,286,779 – 24,286,897	- - - intron="intron;ID=intron_CG14064:2_CG14064:3;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16315	24,286,779 – 24,286,897	+	6	118	88.23	-1.68	0.75	0.552479
11871	dm3.chr3R	24,288,450 – 24,288,588	- - - intron="intron;ID=intron_CG14064:3_CG14064:4;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16316	24,288,450 – 24,288,548	+	3	98	89.46	-2.72	0.71	0.894022
				16317	24,288,450 – 24,288,548	-	3	98	89.46	-2.17	0.78	0.789253
				16318	24,288,480 – 24,288,588	+	3	108	85.80	-2.27	0.81	0.937390
11872	dm3.chr3R	24,293,644 – 24,293,762	- - - intron="intron;ID=intron_CG14064:5_CG14064:6;Name=beat-VI-in;Parent=FBtr0085289;parent_type=mRNA" - - - -	16319	24,293,644 – 24,293,762	+	11	120	72.95	-1.27	0.52	0.791205
11873	dm3.chr3R	24,316,273 – 24,316,396	- - - intron="intron;ID=intron_FBgn0013813:6_FBgn0013813:7;Name=Dhc98D-in;Parent=FBtr0301302,FBtr0301303;parent_type=mRNA" - - - -	16320	24,316,273 – 24,316,371	+	12	120	80.05	-2.23	0.58	0.938705
11873	dm3.chr3R	24,316,273 – 24,316,396		16321	24,316,294 – 24,316,396	+	11	112	85.69	-2.71	0.54	0.902470
11874	dm3.chr3R	24,317,845 – 24,317,965	- - - intron="intron;ID=intron_FBgn0013813:8_FBgn0013813:9;Name=Dhc98D-in;Parent=FBtr0301302,FBtr0301303;parent_type=mRNA" - - - -	16322	24,317,845 – 24,317,965	-	5	120	75.59	-1.80	0.57	0.890745
11875	dm3.chr3R	24,324,030 – 24,324,125	- - - intron="intron;ID=intron_FBgn0013813:19_FBgn0013813:20;Name=Dhc98D-in;Parent=FBtr0301302,FBtr0301303;parent_type=mRNA" - - - -	16323	24,324,030 – 24,324,125	+	6	96	83.57	-2.80	0.61	0.976844
11876	dm3.chr3R	24,331,286 – 24,331,397	- - - intron="intron;ID=intron_FBgn0013813:28_FBgn0013813:29;Name=Dhc98D-in;Parent=FBtr0301302,FBtr0301303;parent_type=mRNA" - - - -	16324	24,331,286 – 24,331,384	+	5	114	71.63	-1.71	0.61	0.951806
				16325	24,331,286 – 24,331,384	-	5	114	71.63	-1.61	0.50	0.745169
				16326	24,331,297 – 24,331,397	+	6	112	65.47	-1.84	0.41	0.960343
11877	dm3.chr3R	24,331,469 – 24,331,530	- - - intron="intron;ID=intron_FBgn0013813:28_FBgn0013813:29;Name=Dhc98D-in;Parent=FBtr0301302,FBtr0301303;parent_type=mRNA" - - - -	16327	24,331,469 – 24,331,530	-	9	61	73.12	-0.89	0.83	0.952491
11878	dm3.chr3R	24,339,292 – 24,339,403	- - - intron="intron;ID=intron_FBgn0013813:37_FBgn0013813:38;Name=Dhc98D-in;Parent=FBtr0301302,FBtr0301303;parent_type=mRNA" - - - -	16328	24,339,292 – 24,339,403	+	5	111	96.58	-1.63	0.93	0.797208
11878	dm3.chr3R	24,339,292 – 24,339,403		16329	24,339,292 – 24,339,403	-	5	111	96.58	-2.91	0.94	0.992167
11879	dm3.chr3R	24,359,164 – 24,359,257	- - - intron="intron;ID=intron_FBgn0003137:18_FBgn0003137:17;Name=Ppn-in;Parent=FBtr0300337,FBtr0301837,FBtr0301838,FBtr0301839;parent_type=mRNA" - - - -	16330	24,359,164 – 24,359,257	+	8	111	67.18	-1.30	0.40	0.500000
11880	dm3.chr3R	24,363,928 – 24,364,026	- - - intron="intron;ID=intron_FBgn0003137:18_FBgn0003137:17;Name=Ppn-in;Parent=FBtr0300337,FBtr0301837,FBtr0301838,FBtr0301839;parent_type=mRNA" - - - -	16331	24,363,928 – 24,364,026	+	8	105	88.37	-1.87	0.77	0.784718
11881	dm3.chr3R	24,371,537 – 24,371,642	- - - - - - - -	16332	24,371,537 – 24,371,642	-	7	105	84.59	-0.91	0.86	0.566147
11882	dm3.chr3R	24,372,177 – 24,372,270	- - - - - - - -	16333	24,372,177 – 24,372,270	-	9	111	78.24	-2.20	0.65	0.977877
11883	dm3.chr3R	24,373,914 – 24,374,009	- - - - - - - -	16334	24,373,914 – 24,374,009	+	5	95	93.08	-1.82	0.88	0.820364
11883	dm3.chr3R	24,373,914 – 24,374,009	- - - - - - - -	16335	24,373,914 – 24,374,009	-	5	95	93.08	-1.87	0.88	0.842755
11884	dm3.chr3R	24,374,679 – 24,374,731	- - - - - - - -	16336	24,374,679 – 24,374,731	+	5	53	87.17	-1.12	0.95	0.812874
11884	dm3.chr3R	24,374,679 – 24,374,731	- - - - - - - -	16337	24,374,679 – 24,374,731	-	5	53	87.17	-0.97	1.00	0.860882
11885	dm3.chr3R	24,374,858 – 24,374,976	- - - - - - - -	16338	24,374,858 – 24,374,976	-	5	118	63.02	-1.60	0.43	0.962773
11886	dm3.chr3R	24,377,328 – 24,377,431	- - - - - - - -	16339	24,377,328 – 24,377,431	+	12	120	96.85	-0.93	0.97	0.522556
11887	dm3.chr3R	24,380,772 – 24,380,873	- - - - - - - -	16340	24,380,772 – 24,380,873	-	5	111	89.71	-2.67	0.91	0.991731
11888	dm3.chr3R	24,392,968 – 24,393,063	- - - - - - - -	16341	24,392,968 – 24,393,063	-	11	111	71.22	-1.70	0.39	0.733058
11889	dm3.chr3R	24,394,201 – 24,394,309	- - - - - - - -	16342	24,394,201 – 24,394,309	-	7	115	68.67	-0.61	0.58	0.666557
11890	dm3.chr3R	24,395,178 – 24,395,285	- - - - - - - -	16343	24,395,178 – 24,395,285	+	12	120	81.15	-2.06	0.53	0.812306
11891	dm3.chr3R	24,395,838 – 24,395,924	- - - - - - - -	16344	24,395,838 – 24,395,924	-	6	86	76.36	-1.38	0.57	0.700381
11892	dm3.chr3R	24,398,985 – 24,399,102	- - - - - - - -	16345	24,398,985 – 24,399,102	-	5	117	97.01	-2.28	0.93	0.959315
11893	dm3.chr3R	24,403,844 – 24,403,935	- - - - - - - -	16346	24,403,844 – 24,403,935	+	12	111	92.07	-1.08	0.94	0.649533
11894	dm3.chr3R	24,410,315 – 24,410,412	- - - - - - - -	16347	24,410,315 – 24,410,412	-	12	114	68.55	-1.36	0.51	0.950972
11895	dm3.chr3R	24,415,758 – 24,415,855	- - - - - - - -	16348	24,415,758 – 24,415,855	-	12	120	72.57	-0.88	0.56	0.543513
11896	dm3.chr3R	24,423,433 – 24,423,546	- - - - - - - -	16349	24,423,433 – 24,423,546	+	10	116	95.94	-1.00	0.96	0.545825
11896	dm3.chr3R	24,423,433 – 24,423,546	- - - - - - - -	16350	24,423,433 – 24,423,546	-	10	116	95.94	-1.33	0.99	0.872222
11897	dm3.chr3R	24,427,253 – 24,427,395	FBnoncoding="snoRNA;ID=FBtr0113587;Name=snoRNA:Psi28S-3405a-RA;Parent=FBgn0082960;Dbxref=FlyBase_Annotation_IDs:CR34618-RA,REFSEQ:NR_003906;score_text=Weakly" - - intron="intron;ID=intron_CG9983:7_CG9983:3;Name=Hrb98DE-in;Parent=FBtr0085302,FBtr0085299,FBtr0085303;parent_type=mRNA" - - - -	16351	24,427,253 – 24,427,395	+	12	158	75.94	-2.11	0.53	0.972225
11898	dm3.chr3R	24,427,597 – 24,427,677	FBnoncoding="snoRNA;ID=FBtr0113589;Name=snoRNA:Psi28S-3405b-RA;Parent=FBgn0082959;Dbxref=FlyBase_Annotation_IDs:CR34620-RA,REFSEQ:NR_003908;score_text=Weakly" - - intron="intron;ID=intron_CG9983:7_CG9983:3;Name=Hrb98DE-in;Parent=FBtr0085302,FBtr0085299,FBtr0085303;parent_type=mRNA" - - - -	16352	24,427,597 – 24,427,677	+	12	83	67.09	-2.27	0.58	0.999610
11898	dm3.chr3R	24,427,597 – 24,427,677		16353	24,427,597 – 24,427,677	-	12	83	67.09	-0.94	0.54	0.956198
11899	dm3.chr3R	24,428,035 – 24,428,218	FBnoncoding="snoRNA;ID=FBtr0113591;Name=snoRNA:Psi28S-3305b-RA;Parent=FBgn0082975;Dbxref=FlyBase_Annotation_IDs:CR34622-RA,REFSEQ:NR_003910;score_text=Weakly" - - intron="intron;ID=intron_CG9983:7_CG9983:3;Name=Hrb98DE-in;Parent=FBtr0085302,FBtr0085299,FBtr0085303;parent_type=mRNA" - - - -	16354	24,428,035 – 24,428,218	+	12	193	70.95	-0.37	0.69	0.819625
11900	dm3.chr3R	24,428,266 – 24,428,414	FBnoncoding="snoRNA;ID=FBtr0113592;Name=snoRNA:Psi28S-3405d-RA;Parent=FBgn0082957;Dbxref=FlyBase_Annotation_IDs:CR34623-RA,REFSEQ:NR_003911;score_text=Weakly" - - intron="intron;ID=intron_CG9983:7_CG9983:3;Name=Hrb98DE-in;Parent=FBtr0085302,FBtr0085299,FBtr0085303;parent_type=mRNA" - - - -	16355	24,428,266 – 24,428,414	+	11	167	76.07	-2.35	0.62	0.995174
11901	dm3.chr3R	24,448,666 – 24,448,784	- - - intron="intron;ID=intron_CG10011:1_CG10011:2;Name=CG10011-in;Parent=FBtr0085319;parent_type=mRNA" - - - -	16356	24,448,666 – 24,448,784	-	5	118	92.97	-1.62	0.87	0.682881
11902	dm3.chr3R	24,465,940 – 24,466,033	- - - - - - - -	16357	24,465,940 – 24,466,033	-	6	114	70.66	-2.07	0.41	0.823574
11903	dm3.chr3R	24,469,124 – 24,469,216	- - - - - - - -	16358	24,469,124 – 24,469,216	+	5	106	58.85	-0.33	0.52	0.500000
11903	dm3.chr3R	24,469,124 – 24,469,216	- - - - - - - -	16359	24,469,124 – 24,469,216	-	5	106	58.85	-0.75	0.50	0.788279
11904	dm3.chr3R	24,474,234 – 24,474,330	- - - - - - - -	16360	24,474,234 – 24,474,330	+	7	119	69.71	-0.92	0.65	0.851847
11905	dm3.chr3R	24,485,854 – 24,485,921	- - - - - - - -	16361	24,485,854 – 24,485,921	-	10	70	82.04	-2.54	0.39	0.693736
11906	dm3.chr3R	24,490,474 – 24,490,551	- - - - - - - -	16362	24,490,474 – 24,490,551	-	11	84	78.46	-1.26	0.57	0.598847
11907	dm3.chr3R	24,491,706 – 24,491,796	- - - - - - - -	16363	24,491,706 – 24,491,796	-	4	90	85.85	-2.07	0.70	0.663999
11908	dm3.chr3R	24,498,073 – 24,498,256	- - - - - - - -	16364	24,498,073 – 24,498,256	+	6	192	69.99	-1.63	0.49	0.924146
11908	dm3.chr3R	24,498,073 – 24,498,256	- - - - - - - -	16365	24,498,073 – 24,498,256	-	6	192	69.99	-1.66	0.48	0.919913
11909	dm3.chr3R	24,500,532 – 24,500,629	- - - - - - - -	16366	24,500,532 – 24,500,629	+	6	100	70.44	-1.82	0.70	0.995003
11909	dm3.chr3R	24,500,532 – 24,500,629	- - - - - - - -	16367	24,500,532 – 24,500,629	-	6	100	70.44	-1.61	0.48	0.895819
11910	dm3.chr3R	24,502,298 – 24,502,394	- - - intron="intron;ID=intron_FBgn0039594:1_FBgn0039594:6;Name=CG9990-in;Parent=FBtr0085308;parent_type=mRNA" - - - -	16368	24,502,298 – 24,502,394	+	6	108	79.85	-1.99	0.51	0.519436
11911	dm3.chr3R	24,511,166 – 24,511,266	- - - intron="intron;ID=intron_FBgn0039594:3_FBgn0039594:4;Name=CG9990-in;Parent=FBtr0305088;parent_type=mRNA" - - - -	16369	24,511,166 – 24,511,266	+	9	110	71.63	-2.03	0.46	0.975880
11912	dm3.chr3R	24,511,493 – 24,511,623	- - - intron="intron;ID=intron_FBgn0039594:3_FBgn0039594:4;Name=CG9990-in;Parent=FBtr0305088;parent_type=mRNA" - - - -	16370	24,511,493 – 24,511,584	+	8	104	67.54	-1.74	0.34	0.587807
				16371	24,511,519 – 24,511,623	+	9	117	67.02	-2.64	0.51	0.999320
				16372	24,511,519 – 24,511,623	-	9	117	67.02	-1.55	0.38	0.791941
11913	dm3.chr3R	24,517,486 – 24,517,578	- - - intron="intron;ID=intron_FBgn0039594:6_FBgn0039594:7;Name=CG9990-in;Parent=FBtr0085308,FBtr0085309,FBtr0303343,FBtr0305087,FBtr0305088;parent_type=mRNA" - - - -	16373	24,517,486 – 24,517,578	-	12	112	76.21	-0.94	0.67	0.655502
11914	dm3.chr3R	24,522,374 – 24,522,465	- - CDS="CDS;ID=CDS_CG9995:2_53;Name=htt-cds;Parent=FBtr0085310;parent_type=mRNA" - - - - -	16374	24,522,374 – 24,522,465	-	11	91	72.14	-0.89	0.52	0.781539
11915	dm3.chr3R	24,523,559 – 24,523,649	- - - intron="intron;ID=intron_CG9995:4_CG9995:5;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16375	24,523,559 – 24,523,649	-	7	94	78.46	-2.18	0.44	0.612432
11916	dm3.chr3R	24,526,977 – 24,527,080	- - - intron="intron;ID=intron_CG9995:5_CG9995:6;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16376	24,526,977 – 24,527,080	+	11	109	84.87	-1.92	0.60	0.571639
11917	dm3.chr3R	24,527,202 – 24,527,300	- - CDS="CDS;ID=CDS_CG9995:6_53;Name=htt-cds;Parent=FBtr0085310;parent_type=mRNA" - - - - -	16377	24,527,202 – 24,527,300	-	5	98	88.37	-1.39	0.92	0.857063
11918	dm3.chr3R	24,527,554 – 24,527,660	- - CDS="CDS;ID=CDS_CG9995:6_53;Name=htt-cds;Parent=FBtr0085310;parent_type=mRNA" - - - - -	16378	24,527,554 – 24,527,660	+	9	115	91.81	-2.19	0.78	0.854137
11919	dm3.chr3R	24,527,684 – 24,527,776	- - CDS="CDS;ID=CDS_CG9995:6_53;Name=htt-cds;Parent=FBtr0085310;parent_type=mRNA" - - - - -	16379	24,527,684 – 24,527,776	-	10	113	72.53	-0.64	0.65	0.678804
11920	dm3.chr3R	24,532,763 – 24,532,860	- - - intron="intron;ID=intron_CG9995:8_CG9995:9;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16380	24,532,763 – 24,532,860	+	7	105	72.75	-2.84	0.44	0.989197
11921	dm3.chr3R	24,533,326 – 24,533,431	- - - intron="intron;ID=intron_CG9995:8_CG9995:9;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16381	24,533,326 – 24,533,431	+	11	113	67.47	-0.90	0.62	0.938350
11922	dm3.chr3R	24,542,626 – 24,542,751	- - - intron="intron;ID=intron_CG9995:15_CG9995:16;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16382	24,542,626 – 24,542,751	+	6	132	81.91	-2.66	0.45	0.827109
11922	dm3.chr3R	24,542,626 – 24,542,751		16383	24,542,626 – 24,542,751	-	6	132	81.91	-2.75	0.57	0.973350
11923	dm3.chr3R	24,544,766 – 24,544,860	- - - - - - - -	16384	24,544,766 – 24,544,860	-	8	97	71.10	-0.74	0.56	0.720979
11924	dm3.chr3R	24,547,489 – 24,547,589	- - - - - - - -	16385	24,547,489 – 24,547,589	+	10	100	68.59	-1.14	0.48	0.855315
11924	dm3.chr3R	24,547,489 – 24,547,589	- - - - - - - -	16386	24,547,489 – 24,547,589	-	10	100	68.59	-0.31	0.71	0.833548
11925	dm3.chr3R	24,548,555 – 24,548,695	- - - intron="intron;ID=intron_CG9995:21_CG9995:22;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16387	24,548,555 – 24,548,656	+	6	117	79.41	-3.68	0.49	0.996939
				16388	24,548,555 – 24,548,656	-	6	117	79.41	-2.17	0.54	0.824236
				16389	24,548,587 – 24,548,695	+	6	118	80.57	-2.50	0.43	0.698507
11926	dm3.chr3R	24,549,588 – 24,549,699	- - CDS="CDS;ID=CDS_CG9995:22_53;Name=htt-cds;Parent=FBtr0085310;parent_type=mRNA" - - - - -	16390	24,549,588 – 24,549,699	+	13	111	83.68	-1.41	0.63	0.516226
11926	dm3.chr3R	24,549,588 – 24,549,699		16391	24,549,588 – 24,549,699	-	13	111	83.68	-2.39	0.44	0.713718
11927	dm3.chr3R	24,550,672 – 24,550,772	- - - - - - - -	16392	24,550,672 – 24,550,772	-	11	115	58.28	-0.93	0.32	0.556192
11928	dm3.chr3R	24,551,995 – 24,552,095	- - - intron="intron;ID=intron_CG9995:25_CG9995:26;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16393	24,551,995 – 24,552,095	+	5	105	87.62	-2.46	0.67	0.871627
11928	dm3.chr3R	24,551,995 – 24,552,095		16394	24,551,995 – 24,552,095	-	5	105	87.62	-2.01	0.77	0.847800
11929	dm3.chr3R	24,555,014 – 24,555,110	- - - intron="intron;ID=intron_CG9995:27_CG9995:28;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16395	24,555,014 – 24,555,110	-	6	98	77.93	-1.40	0.67	0.800671
11930	dm3.chr3R	24,555,392 – 24,555,503	- - - intron="intron;ID=intron_CG9995:27_CG9995:28;Name=htt-in;Parent=FBtr0085310;parent_type=mRNA" - - - -	16396	24,555,392 – 24,555,503	-	8	114	62.86	-1.39	0.36	0.901465
11931	dm3.chr3R	24,561,706 – 24,561,764	- - - - - - - -	16397	24,561,706 – 24,561,764	+	3	58	96.55	-1.51	1.03	0.954911
11932	dm3.chr3R	24,567,643 – 24,567,737	- - - intron="intron;ID=intron_CG10001:1_CG10001:2;Name=AR-2-in;Parent=FBtr0085316;parent_type=mRNA" - - - -	16398	24,567,643 – 24,567,737	+	10	116	83.42	-2.04	0.67	0.873548
11933	dm3.chr3R	24,571,446 – 24,571,557	- - - - - - - -	16399	24,571,446 – 24,571,557	+	5	111	76.04	-1.09	0.81	0.828490
11934	dm3.chr3R	24,573,607 – 24,573,704	- - - - - - - -	16400	24,573,607 – 24,573,704	+	5	97	94.02	-2.15	0.87	0.904116
11935	dm3.chr3R	24,601,677 – 24,601,785	- - - - - - - -	16401	24,601,677 – 24,601,785	-	12	120	89.41	-1.84	0.72	0.594649
11936	dm3.chr3R	24,604,560 – 24,604,670	- - - - - - - -	16402	24,604,560 – 24,604,669	-	11	113	86.75	-1.84	0.68	0.707984
11936	dm3.chr3R	24,604,560 – 24,604,670	- - - - - - - -	16403	24,604,571 – 24,604,670	-	11	113	82.19	-2.11	0.58	0.843272
11937	dm3.chr3R	24,610,327 – 24,610,420	- - - - - - - -	16404	24,610,327 – 24,610,420	+	11	119	75.37	-1.61	0.51	0.712271
11938	dm3.chr3R	24,618,898 – 24,619,003	- - - - - - - -	16405	24,618,898 – 24,619,003	+	3	112	60.60	-1.10	0.51	0.583321
11939	dm3.chr3R	24,619,050 – 24,619,147	- - - - - - - -	16406	24,619,050 – 24,619,147	+	4	99	63.28	-1.41	0.40	0.637089
11939	dm3.chr3R	24,619,050 – 24,619,147	- - - - - - - -	16407	24,619,050 – 24,619,147	-	4	99	63.28	-1.41	0.38	0.531272
11940	dm3.chr3R	24,625,580 – 24,625,671	- - - - - - - -	16408	24,625,580 – 24,625,671	-	10	114	64.27	-1.32	0.38	0.751771
11941	dm3.chr3R	24,638,236 – 24,638,338	- - - intron="intron;ID=intron_FBgn0039600:6_FBgn0039600:8;Name=CG1646-in;Parent=FBtr0085322,FBtr0113301;parent_type=mRNA" - "Noncode_2.0=n3507_u3135_AJ544005_snoRNA_Drosophila\|2.5e-20" "unique_Noncode_2.0=u3135_snoRNA_Drosophila\|2.1e-20" -	16409	24,638,236 – 24,638,338	+	12	111	61.13	-0.49	0.59	0.954349
11942	dm3.chr3R	24,644,525 – 24,644,645	- - CDS="CDS;ID=CDS_FBgn0039601:2_219;Name=CG1523-cds;Parent=FBtr0085355;parent_type=mRNA" - - - - -	16410	24,644,525 – 24,644,645	+	14	120	73.19	-1.71	0.37	0.772267
11943	dm3.chr3R	24,651,860 – 24,651,952	- - - intron="intron;ID=intron_CG1520:4_CG1520:5;Name=WASp-in;Parent=FBtr0085352,FBtr0085353,FBtr0085354;parent_type=mRNA" - - - -	16411	24,651,860 – 24,651,952	+	9	101	61.47	-1.08	0.47	0.951799
11944	dm3.chr3R	24,656,063 – 24,656,157	- - - - - - - -	16412	24,656,063 – 24,656,157	-	7	104	66.57	-1.07	0.45	0.742496
11945	dm3.chr3R	24,661,593 – 24,661,695	- - CDS="CDS;ID=CDS_CG1451:4_15;Name=Apc-cds;Parent=FBtr0085351;parent_type=mRNA" - - - - -	16413	24,661,593 – 24,661,695	+	11	114	91.82	-2.36	0.75	0.850779
11945	dm3.chr3R	24,661,593 – 24,661,695		16414	24,661,593 – 24,661,695	-	11	114	91.82	-2.82	0.89	0.991990
11946	dm3.chr3R	24,672,541 – 24,672,632	- - - intron="intron;ID=intron_FBgn0051048:1_FBgn0051048:2;Name=CG31048-in;Parent=FBtr0289996,FBtr0289997;parent_type=mRNA" - - - -	16415	24,672,541 – 24,672,632	-	7	108	62.18	-1.60	0.28	0.564851
11947	dm3.chr3R	24,682,533 – 24,682,615	- - - intron="intron;ID=intron_CG1448:2_CG1448:3;Name=inx3-in;Parent=FBtr0085350;parent_type=mRNA" - - - -	16416	24,682,533 – 24,682,615	+	5	85	86.16	-1.47	0.78	0.500000
11948	dm3.chr3R	24,683,435 – 24,683,529	- - - intron="intron;ID=intron_CG1448:1_CG1448:2;Name=inx3-in;Parent=FBtr0085350;parent_type=mRNA" - - - -	16417	24,683,435 – 24,683,529	+	5	108	68.06	-2.86	0.52	0.998902
11948	dm3.chr3R	24,683,435 – 24,683,529		16418	24,683,435 – 24,683,529	-	5	108	68.06	-2.23	0.57	0.996058
11949	dm3.chr3R	24,694,722 – 24,694,856	- - - intron="intron;ID=intron_FBgn0051048:12_FBgn0051048:14;Name=CG31048-in;Parent=FBtr0289996;parent_type=mRNA" - - - -	16419	24,694,722 – 24,694,816	+	12	109	76.25	-1.58	0.72	0.980052
11949	dm3.chr3R	24,694,722 – 24,694,856		16420	24,694,737 – 24,694,856	+	12	120	88.28	-1.56	0.79	0.719468
11950	dm3.chr3R	24,731,680 – 24,731,791	- - CDS="CDS;ID=CDS_FBgn0259220:12_184;Name=Doa-cds;Parent=FBtr0299751;parent_type=mRNA" intron="intron;ID=intron_FBgn0259220:11_FBgn0259220:18;Name=Doa-in;Parent=FBtr0299746,FBtr0301396;parent_type=mRNA" - - - -	16421	24,731,680 – 24,731,791	+	8	120	67.64	-1.98	0.35	0.880763
11951	dm3.chr3R	24,748,772 – 24,748,823	- - - - - - - -	16422	24,748,772 – 24,748,823	+	6	51	82.75	-1.00	0.92	0.809583
11952	dm3.chr3R	24,759,566 – 24,759,661	- - - intron="intron;ID=intron_CG14521:1_CG14521:2;Name=CG14521-in;Parent=FBtr0085347;parent_type=mRNA" - - - -	16423	24,759,566 – 24,759,661	+	8	106	61.08	-1.12	0.43	0.929838
11953	dm3.chr3R	24,765,348 – 24,765,470	- - - intron="intron;ID=intron_CG14521:1_CG14521:2;Name=CG14521-in;Parent=FBtr0085347;parent_type=mRNA" - - - -	16424	24,765,348 – 24,765,470	-	6	124	75.67	-1.36	0.62	0.760186
11954	dm3.chr3R	24,769,296 – 24,769,388	- - - intron="intron;ID=intron_CG14521:1_CG14521:2;Name=CG14521-in;Parent=FBtr0085347;parent_type=mRNA" - - - -	16425	24,769,296 – 24,769,388	+	5	92	99.13	-1.74	1.00	0.942359
11955	dm3.chr3R	24,772,365 – 24,772,477	- - - intron="intron;ID=intron_CG14521:1_CG14521:2;Name=CG14521-in;Parent=FBtr0085347;parent_type=mRNA" - - - -	16426	24,772,365 – 24,772,466	+	8	110	80.47	-2.74	0.59	0.983364
11955	dm3.chr3R	24,772,365 – 24,772,477		16427	24,772,374 – 24,772,477	+	8	111	77.69	-2.17	0.41	0.580044
11956	dm3.chr3R	24,780,226 – 24,780,282	- - - intron="intron;ID=intron_CG14521:1_CG14521:2;Name=CG14521-in;Parent=FBtr0085347;parent_type=mRNA" - - - -	16428	24,780,226 – 24,780,282	+	6	56	85.36	-1.80	0.77	0.851711
11957	dm3.chr3R	24,783,762 – 24,783,861	- - - intron="intron;ID=intron_CG14521:1_CG14521:2;Name=CG14521-in;Parent=FBtr0085347;parent_type=mRNA" - - - -	16429	24,783,762 – 24,783,861	-	7	107	66.01	-1.20	0.37	0.564145
11958	dm3.chr3R	24,789,319 – 24,789,418	- - - intron="intron;ID=intron_CG14521:1_CG14521:2;Name=CG14521-in;Parent=FBtr0085347;parent_type=mRNA" - - - -	16430	24,789,319 – 24,789,418	+	5	99	76.50	-1.78	0.56	0.644496
11959	dm3.chr3R	24,790,295 – 24,790,415	- - - intron="intron;ID=intron_CG14521:1_CG14521:2;Name=CG14521-in;Parent=FBtr0085347;parent_type=mRNA" - - - -	16431	24,790,295 – 24,790,415	+	12	120	97.98	-1.70	0.95	0.862431
11960	dm3.chr3R	24,791,778 – 24,791,871	- - - intron="intron;ID=intron_CG14521:1_CG14521:2;Name=CG14521-in;Parent=FBtr0085347;parent_type=mRNA" - - - -	16432	24,791,778 – 24,791,871	+	7	93	72.13	-0.98	0.50	0.592764
11961	dm3.chr3R	24,798,616 – 24,798,717	- - - - - - - -	16433	24,798,616 – 24,798,717	+	8	114	73.42	-1.05	0.55	0.514024
11962	dm3.chr3R	24,800,374 – 24,800,470	- - - - - - - -	16434	24,800,374 – 24,800,470	+	11	111	75.46	-1.92	0.51	0.930288
11963	dm3.chr3R	24,802,445 – 24,802,536	- - - - - - - -	16435	24,802,445 – 24,802,536	+	11	100	86.51	-2.05	0.66	0.758201
11963	dm3.chr3R	24,802,445 – 24,802,536	- - - - - - - -	16436	24,802,445 – 24,802,536	-	11	100	86.51	-1.33	0.77	0.500000
11964	dm3.chr3R	24,806,844 – 24,806,939	- - - - - - - -	16437	24,806,844 – 24,806,939	+	11	114	71.86	-2.46	0.25	0.558954
11965	dm3.chr3R	24,816,729 – 24,816,846	- - - - - - - -	16438	24,816,729 – 24,816,846	+	12	120	90.07	-2.41	0.69	0.879244
11966	dm3.chr3R	24,825,019 – 24,825,101	- - - intron="intron;ID=intron_CG1443:1_CG1443:2;Name=CG1443-in;Parent=FBtr0085345;parent_type=mRNA" - - - -	16439	24,825,019 – 24,825,101	+	6	88	58.87	0.16	0.59	0.532536
11967	dm3.chr3R	24,840,665 – 24,840,794	- - - intron="intron;ID=intron_CG1443:1_CG1443:2;Name=CG1443-in;Parent=FBtr0085345;parent_type=mRNA" - - - -	16440	24,840,665 – 24,840,794	-	7	131	92.14	-2.07	0.81	0.831461
11968	dm3.chr3R	24,869,663 – 24,869,768	- - - intron="intron;ID=intron_FBgn0003093:7_FBgn0003093:8;Name=Pkc98E-in;Parent=FBtr0085359;parent_type=mRNA" - - - -	16441	24,869,663 – 24,869,768	+	7	114	71.82	-2.75	0.38	0.971789
11969	dm3.chr3R	24,871,952 – 24,872,003	- - - - - - - -	16442	24,871,952 – 24,872,003	+	4	53	83.76	-1.38	0.85	0.772977
11970	dm3.chr3R	24,889,428 – 24,889,499	- - - - - - - -	16443	24,889,428 – 24,889,499	-	6	76	75.87	-3.09	0.41	0.982622
11971	dm3.chr3R	24,890,260 – 24,890,355	- - CDS="CDS;ID=CDS_FBgn0039633:1_238;Name=CG11873-cds;Parent=FBtr0085365;parent_type=mRNA" - - - - -	16444	24,890,260 – 24,890,355	+	12	117	72.67	-1.11	0.53	0.534047
11972	dm3.chr3R	24,892,149 – 24,892,241	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16445	24,892,149 – 24,892,241	+	7	104	70.11	-0.59	0.59	0.554699
11973	dm3.chr3R	24,896,557 – 24,896,673	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16446	24,896,557 – 24,896,673	+	6	120	64.82	-1.76	0.41	0.965221
11973	dm3.chr3R	24,896,557 – 24,896,673		16447	24,896,557 – 24,896,673	-	6	120	64.82	-2.02	0.37	0.969023
11974	dm3.chr3R	24,897,579 – 24,897,680	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16448	24,897,579 – 24,897,680	+	5	101	85.64	-1.84	0.70	0.649345
11975	dm3.chr3R	24,897,791 – 24,897,886	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16449	24,897,791 – 24,897,886	+	5	99	88.44	-1.67	0.83	0.750587
11976	dm3.chr3R	24,899,973 – 24,900,072	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16450	24,899,973 – 24,900,071	-	8	108	73.28	-1.78	0.67	0.987396
11976	dm3.chr3R	24,899,973 – 24,900,072		16451	24,899,973 – 24,900,072	-	8	106	74.02	-1.75	0.65	0.982152
11977	dm3.chr3R	24,902,480 – 24,902,578	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16452	24,902,480 – 24,902,578	+	10	112	64.95	-0.73	0.49	0.792068
11978	dm3.chr3R	24,903,180 – 24,903,287	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16453	24,903,180 – 24,903,287	-	6	112	75.22	-2.06	0.53	0.950514
11979	dm3.chr3R	24,908,836 – 24,908,927	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16454	24,908,836 – 24,908,927	-	3	93	94.22	-1.75	1.00	0.963202
11980	dm3.chr3R	24,911,448 – 24,911,561	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16455	24,911,448 – 24,911,561	-	5	119	88.37	-2.12	0.73	0.736263
11981	dm3.chr3R	24,916,030 – 24,916,188	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16456	24,916,030 – 24,916,122	+	4	94	95.89	-2.65	0.96	0.990138
				16457	24,916,030 – 24,916,122	-	4	94	95.89	-2.68	0.88	0.968629
				16458	24,916,050 – 24,916,155	+	7	120	67.96	-2.79	0.35	0.983585
				16459	24,916,050 – 24,916,155	-	7	120	67.96	-2.56	0.43	0.992191
				16460	24,916,089 – 24,916,188	+	7	116	64.48	-2.41	0.34	0.968856
				16461	24,916,089 – 24,916,188	-	7	116	64.48	-1.79	0.30	0.538818
11982	dm3.chr3R	24,917,256 – 24,917,329	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16462	24,917,256 – 24,917,329	+	8	73	80.48	-2.36	0.35	0.522345
11983	dm3.chr3R	24,921,290 – 24,921,381	- - - intron="intron;ID=intron_FBgn0039633:1_FBgn0039633:2;Name=CG11873-in;Parent=FBtr0085365;parent_type=mRNA" - - - -	16463	24,921,290 – 24,921,381	+	6	91	86.75	-2.11	0.68	0.770996
11983	dm3.chr3R	24,921,290 – 24,921,381		16464	24,921,290 – 24,921,381	-	6	91	86.75	-4.01	0.70	0.998693
11984	dm3.chr3R	24,923,237 – 24,923,339	- - - - - - - -	16465	24,923,237 – 24,923,339	+	12	113	72.96	-0.93	0.78	0.933313
11984	dm3.chr3R	24,923,237 – 24,923,339	- - - - - - - -	16466	24,923,237 – 24,923,339	-	12	113	72.96	-0.46	0.74	0.679208
11985	dm3.chr3R	24,923,377 – 24,923,488	- - CDS="CDS;ID=CDS_FBgn0039633:3_238;Name=CG11873-cds;Parent=FBtr0085365;parent_type=mRNA" - - - - -	16467	24,923,377 – 24,923,488	-	6	111	93.33	-1.92	0.88	0.875674
11986	dm3.chr3R	24,925,522 – 24,925,625	- - CDS="CDS;ID=CDS_FBgn0039633:4_238;Name=CG11873-cds;Parent=FBtr0085365;parent_type=mRNA" - - - - -	16468	24,925,522 – 24,925,625	-	13	112	67.88	-1.98	0.23	0.607217
11987	dm3.chr3R	24,930,217 – 24,930,320	- - CDS="CDS;ID=CDS_FBgn0039633:8_238;Name=CG11873-cds;Parent=FBtr0085365;parent_type=mRNA" - - - - -	16469	24,930,217 – 24,930,320	-	12	113	74.47	-1.73	0.52	0.949848
11988	dm3.chr3R	24,942,420 – 24,942,531	- - - - - - - -	16470	24,942,420 – 24,942,531	+	11	116	66.90	-1.17	0.35	0.603039
11989	dm3.chr3R	24,944,521 – 24,944,618	- - - - - - - -	16471	24,944,521 – 24,944,618	+	12	111	67.84	-1.52	0.34	0.636872
11990	dm3.chr3R	24,967,006 – 24,967,212	- - - intron="intron;ID=intron_CG14516:8_CG14516:2;Name=CG14516-in;Parent=FBtr0085383;parent_type=mRNA" - - - -	16472	24,967,006 – 24,967,122	-	5	120	82.37	-1.45	0.74	0.591870
				16473	24,967,046 – 24,967,150	+	4	120	83.04	-1.84	0.75	0.782931
				16474	24,967,082 – 24,967,187	+	3	105	95.56	-2.37	0.79	0.734147
				16475	24,967,082 – 24,967,187	-	3	105	95.56	-1.08	0.96	0.570089
				16476	24,967,122 – 24,967,212	+	3	90	96.30	-3.39	0.86	0.990909
				16477	24,967,122 – 24,967,212	-	3	90	96.30	-1.69	1.00	0.948617
11991	dm3.chr3R	24,967,806 – 24,967,898	- - - intron="intron;ID=intron_CG14516:8_CG14516:2;Name=CG14516-in;Parent=FBtr0085383;parent_type=mRNA" - - - -	16478	24,967,806 – 24,967,898	-	5	92	76.13	-1.08	0.78	0.791696
11992	dm3.chr3R	24,974,887 – 24,975,007	- - CDS="CDS;ID=CDS_FBgn0014869:4_213;Name=Pglym78-cds;Parent=FBtr0085384,FBtr0100482,FBtr0100483;parent_type=mRNA" - - - - -	16479	24,974,887 – 24,975,007	+	15	120	83.23	-1.29	0.67	0.587759
11993	dm3.chr3R	24,975,257 – 24,975,461	- - CDS="CDS;ID=CDS_FBgn0014869:5_213;Name=Pglym78-cds;Parent=FBtr0085384,FBtr0100482,FBtr0100483;parent_type=mRNA" - - - - -	16480	24,975,257 – 24,975,352	+	11	106	69.10	-0.72	0.62	0.928951
				16481	24,975,263 – 24,975,367	+	12	112	72.81	-1.64	0.61	0.992383
				16482	24,975,367 – 24,975,461	+	15	101	80.97	-1.37	0.57	0.531256
11994	dm3.chr3R	24,988,910 – 24,989,029	- - CDS="CDS;ID=CDS_CG11897:6_86;Name=CG11897-cds;Parent=FBtr0085387,FBtr0085386;parent_type=mRNA" - - - - -	16483	24,988,910 – 24,989,029	+	14	120	67.27	-0.69	0.42	0.573946
11995	dm3.chr3R	24,998,157 – 24,998,264	- - - - - - - -	16484	24,998,157 – 24,998,264	+	11	117	62.11	-1.68	0.38	0.977919
11995	dm3.chr3R	24,998,157 – 24,998,264	- - - - - - - -	16485	24,998,157 – 24,998,264	-	11	117	62.11	-3.40	0.58	0.999978
11996	dm3.chr3R	24,998,518 – 24,998,608	- - - - - - - -	16486	24,998,518 – 24,998,608	-	12	114	75.38	-2.08	0.66	0.990163
11997	dm3.chr3R	25,003,963 – 25,004,069	- - - intron="intron;ID=intron_FBgn0039647:8_FBgn0039647:7;Name=CG14509-in;Parent=FBtr0113303,FBtr0113304;parent_type=mRNA" - - - -	16487	25,003,963 – 25,004,069	+	6	121	75.50	-1.70	0.51	0.607612
11997	dm3.chr3R	25,003,963 – 25,004,069		16488	25,003,963 – 25,004,069	-	6	121	75.50	-1.60	0.56	0.699193
11998	dm3.chr3R	25,006,915 – 25,007,014	- - CDS="CDS;ID=CDS_FBgn0039647:9_143;Name=CG14509-cds;Parent=FBtr0113303;parent_type=mRNA" - - - - -	16489	25,006,915 – 25,007,014	-	12	120	76.44	-1.97	0.46	0.813242
11999	dm3.chr3R	25,008,334 – 25,008,431	- - - intron="intron;ID=intron_FBgn0039647:11_FBgn0039647:9;Name=CG14509-in;Parent=FBtr0113303;parent_type=mRNA" - - - -	16490	25,008,334 – 25,008,431	-	7	119	57.04	-1.17	0.35	0.728251
12000	dm3.chr3R	25,013,629 – 25,013,726	- - - intron="intron;ID=intron_FBgn0039647:11_FBgn0039647:9;Name=CG14509-in;Parent=FBtr0113303;parent_type=mRNA" - - - -	16491	25,013,629 – 25,013,726	+	5	98	93.24	-2.14	0.78	0.691561
12000	dm3.chr3R	25,013,629 – 25,013,726		16492	25,013,629 – 25,013,726	-	5	98	93.24	-3.87	0.90	0.998213
12001	dm3.chr3R	25,018,259 – 25,018,354	- - - intron="intron;ID=intron_FBgn0039647:11_FBgn0039647:9;Name=CG14509-in;Parent=FBtr0113303;parent_type=mRNA" - - - -	16493	25,018,259 – 25,018,354	-	5	102	74.82	-1.26	0.58	0.531775
12002	dm3.chr3R	25,019,761 – 25,019,899	- - - intron="intron;ID=intron_FBgn0039647:11_FBgn0039647:9;Name=CG14509-in;Parent=FBtr0113303;parent_type=mRNA" - - - -	16494	25,019,761 – 25,019,871	+	5	120	73.17	-1.25	0.56	0.563153
12002	dm3.chr3R	25,019,761 – 25,019,899		16495	25,019,791 – 25,019,899	+	5	120	74.02	-1.49	0.51	0.515316
12003	dm3.chr3R	25,038,034 – 25,038,117	- - - - - - - -	16496	25,038,034 – 25,038,117	+	5	83	98.55	-1.38	0.96	0.721745
12003	dm3.chr3R	25,038,034 – 25,038,117	- - - - - - - -	16497	25,038,034 – 25,038,117	-	5	83	98.55	-1.60	0.93	0.719668
12004	dm3.chr3R	25,041,285 – 25,041,414	FBnoncoding="pre_miRNA;ID=FBtr0304462;Name=mir-279-RM;Parent=FBgn0262448;Alias=CR43015-RM;Dbxref=FlyBase_Annotation_IDs:CR43015-RM,miRBase:MI0000363" - - - "Rfam_10.0=RF00754;mir-279;AASU01038261.1/2067-2161\|2.8e-45" - - "mirBase_v16=dme-mir-279\|2.3e-52"	16498	25,041,285 – 25,041,392	+	11	117	79.66	-1.64	0.70	0.939453
				16499	25,041,313 – 25,041,414	+	12	116	90.00	-5.73	0.95	0.998337
				16500	25,041,313 – 25,041,414	-	12	116	90.00	-3.18	0.88	0.996771
12005	dm3.chr3R	25,042,904 – 25,043,006	FBnoncoding="pre_miRNA;ID=FBtr0304319;Name=mir-996-RM;Parent=FBgn0262404;Alias=CR42947-RM;Dbxref=FlyBase_Annotation_IDs:CR42947-RM,miRBase:MI0005857" - - - "Rfam_10.0=RF00948;mir-996;AANI01014375.1/48816-48912\|5.4e-46" - - "mirBase_v16=dme-mir-996\|1.1e-50"	16501	25,042,904 – 25,043,006	+	12	120	94.73	-4.04	0.97	0.998860
12005	dm3.chr3R	25,042,904 – 25,043,006		16502	25,042,904 – 25,043,006	-	12	120	94.73	-3.74	0.99	0.998763
12006	dm3.chr3R	25,044,017 – 25,044,101	- - - - - - - -	16503	25,044,017 – 25,044,101	-	5	94	60.98	-1.44	0.39	0.806027
12007	dm3.chr3R	25,056,878 – 25,057,011	- - CDS="CDS;ID=CDS_FBgn0028476:5_177;Name=CG15817-cds;Parent=FBtr0300832,FBtr0300833;parent_type=mRNA" - - - - -	16504	25,056,878 – 25,056,977	+	12	105	64.56	-1.21	0.32	0.618751
12007	dm3.chr3R	25,056,878 – 25,057,011		16505	25,056,909 – 25,057,011	+	12	111	59.60	-2.25	0.32	0.992889
12008	dm3.chr3R	25,092,054 – 25,092,151	- - - - - - - -	16506	25,092,054 – 25,092,151	-	9	105	66.23	-1.96	0.29	0.831858
12009	dm3.chr3R	25,097,091 – 25,097,197	- - - - - - - -	16507	25,097,091 – 25,097,197	+	8	119	88.86	-1.88	0.75	0.658773
12010	dm3.chr3R	25,099,135 – 25,099,261	- - - - - - - -	16508	25,099,135 – 25,099,232	+	7	97	78.65	-2.06	0.68	0.971502
				16509	25,099,135 – 25,099,232	-	7	97	78.65	-1.35	0.63	0.602807
				16510	25,099,159 – 25,099,261	-	6	102	85.02	-1.93	0.70	0.781759
12011	dm3.chr3R	25,136,097 – 25,136,187	- - - - - - - -	16511	25,136,097 – 25,136,187	-	5	103	77.61	-1.64	0.64	0.643624
12012	dm3.chr3R	25,149,192 – 25,149,298	- - - - - - - -	16512	25,149,192 – 25,149,298	-	12	115	85.24	-2.19	0.65	0.891920
12013	dm3.chr3R	25,151,080 – 25,151,202	- - - - - - - -	16513	25,151,080 – 25,151,202	-	6	147	75.54	-1.52	0.55	0.627251
12014	dm3.chr3R	25,157,321 – 25,157,412	- - - - - - - -	16514	25,157,321 – 25,157,412	+	7	115	64.78	-1.60	0.29	0.507938
12015	dm3.chr3R	25,158,958 – 25,159,073	- - - - - - - -	16515	25,158,958 – 25,159,059	-	5	113	70.93	-1.73	0.62	0.974585
				16516	25,158,978 – 25,159,073	+	5	107	81.77	-1.84	0.75	0.892796
				16517	25,158,978 – 25,159,073	-	5	107	81.77	-2.01	0.73	0.921674
12016	dm3.chr3R	25,169,893 – 25,169,983	- - - - - - - -	16518	25,169,893 – 25,169,983	-	10	111	75.39	-2.73	0.46	0.985861
12017	dm3.chr3R	25,175,771 – 25,175,829	- - - - "Rfam_10.0=RF00177;SSU_rRNA_5;AASU01032674.1/61-551\|7.8e-22" - - -	16519	25,175,771 – 25,175,829	+	3	58	96.53	-2.52	0.98	0.989523
12018	dm3.chr3R	25,177,902 – 25,177,992	- - - - - - - -	16520	25,177,902 – 25,177,992	-	12	114	88.59	-1.28	0.87	0.646259
12019	dm3.chr3R	25,179,579 – 25,179,672	- - - - - - - -	16521	25,179,579 – 25,179,672	+	10	112	63.27	-1.46	0.29	0.533310
12020	dm3.chr3R	25,181,827 – 25,181,925	- - - - - - - -	16522	25,181,827 – 25,181,925	+	4	98	78.14	-0.88	0.90	0.695801
12021	dm3.chr3R	25,183,601 – 25,183,819	- - - - - - - -	16523	25,183,601 – 25,183,694	+	10	100	71.11	-1.26	0.45	0.704529
				16524	25,183,694 – 25,183,792	-	10	118	85.40	-1.72	0.74	0.749822
				16525	25,183,715 – 25,183,819	-	10	120	82.15	-1.54	0.63	0.557344
12022	dm3.chr3R	25,184,162 – 25,184,260	- - - - - - - -	16526	25,184,162 – 25,184,260	+	8	120	66.05	-2.07	0.28	0.619871
12023	dm3.chr3R	25,184,570 – 25,184,669	- - - - - - - -	16527	25,184,570 – 25,184,669	+	6	105	70.10	-1.49	0.67	0.985924
12023	dm3.chr3R	25,184,570 – 25,184,669	- - - - - - - -	16528	25,184,570 – 25,184,669	-	6	105	70.10	-1.16	0.60	0.919768
12024	dm3.chr3R	25,185,454 – 25,185,544	- - - - - - - -	16529	25,185,454 – 25,185,544	-	11	116	77.39	-2.39	0.43	0.799784
12025	dm3.chr3R	25,199,946 – 25,199,998	- - - - - - - -	16530	25,199,946 – 25,199,998	+	3	52	96.15	-0.67	1.02	0.594896
12026	dm3.chr3R	25,200,334 – 25,200,442	- - - - - - - -	16531	25,200,334 – 25,200,442	+	12	113	73.97	-1.38	0.62	0.943129
12026	dm3.chr3R	25,200,334 – 25,200,442	- - - - - - - -	16532	25,200,334 – 25,200,442	-	12	113	73.97	-1.10	0.55	0.704249
12027	dm3.chr3R	25,200,502 – 25,200,610	- - - - - - - -	16533	25,200,502 – 25,200,610	+	5	109	88.74	-1.45	0.92	0.840617
12028	dm3.chr3R	25,206,488 – 25,206,540	- - - intron="intron;ID=intron_FBgn0004369:1_FBgn0004369:2;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16534	25,206,488 – 25,206,540	-	6	52	96.79	-0.90	0.99	0.606660
12029	dm3.chr3R	25,229,454 – 25,229,550	- - - intron="intron;ID=intron_FBgn0004369:2_FBgn0004369:3;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16535	25,229,454 – 25,229,550	-	9	101	70.11	-1.80	0.31	0.557423
12030	dm3.chr3R	25,229,899 – 25,230,043	- - - intron="intron;ID=intron_FBgn0004369:2_FBgn0004369:3;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16536	25,229,899 – 25,230,012	-	3	120	81.82	-2.27	0.69	0.857714
12030	dm3.chr3R	25,229,899 – 25,230,043		16537	25,229,939 – 25,230,043	-	3	111	82.12	-1.81	0.74	0.701702
12031	dm3.chr3R	25,246,617 – 25,246,719	- - - intron="intron;ID=intron_FBgn0004369:5_FBgn0004369:6;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16538	25,246,617 – 25,246,719	+	5	114	84.49	-2.95	0.64	0.976016
12031	dm3.chr3R	25,246,617 – 25,246,719		16539	25,246,617 – 25,246,719	-	5	114	84.49	-1.79	0.69	0.577743
12032	dm3.chr3R	25,250,578 – 25,250,722	- - - intron="intron;ID=intron_FBgn0004369:6_FBgn0004369:7;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16540	25,250,578 – 25,250,722	-	8	151	73.45	-1.53	0.43	0.643307
12033	dm3.chr3R	25,251,181 – 25,251,327	- - - intron="intron;ID=intron_FBgn0004369:6_FBgn0004369:7;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16541	25,251,181 – 25,251,287	+	6	113	71.25	-1.21	0.59	0.749954
12033	dm3.chr3R	25,251,181 – 25,251,327		16542	25,251,210 – 25,251,327	+	6	117	76.76	-3.19	0.58	0.998335
12034	dm3.chr3R	25,252,036 – 25,252,145	- - - intron="intron;ID=intron_FBgn0004369:6_FBgn0004369:7;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16543	25,252,036 – 25,252,145	+	6	112	74.95	-1.58	0.61	0.927297
12035	dm3.chr3R	25,255,436 – 25,255,534	- - - intron="intron;ID=intron_FBgn0004369:7_FBgn0004369:8;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16544	25,255,436 – 25,255,534	+	5	112	61.13	-1.98	0.31	0.765557
12036	dm3.chr3R	25,256,130 – 25,256,227	- - - intron="intron;ID=intron_FBgn0004369:7_FBgn0004369:8;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16545	25,256,130 – 25,256,227	+	4	121	68.35	-1.14	0.60	0.591786
12037	dm3.chr3R	25,257,421 – 25,257,576	- - - intron="intron;ID=intron_FBgn0004369:8_FBgn0004369:11;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16546	25,257,421 – 25,257,536	-	8	117	79.78	-1.83	0.54	0.643588
12037	dm3.chr3R	25,257,421 – 25,257,576		16547	25,257,461 – 25,257,576	+	7	118	70.85	-1.47	0.64	0.961884
12038	dm3.chr3R	25,264,707 – 25,264,805	- - - intron="intron;ID=intron_FBgn0004369:8_FBgn0004369:11;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16548	25,264,707 – 25,264,805	+	9	103	64.90	-1.46	0.35	0.797325
12039	dm3.chr3R	25,266,142 – 25,266,276	- - - intron="intron;ID=intron_FBgn0004369:8_FBgn0004369:11;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16549	25,266,142 – 25,266,249	-	9	121	69.07	-0.92	0.56	0.808906
12039	dm3.chr3R	25,266,142 – 25,266,276		16550	25,266,169 – 25,266,276	-	9	121	70.80	-1.77	0.42	0.872086
12040	dm3.chr3R	25,279,419 – 25,279,525	- - - intron="intron;ID=intron_FBgn0004369:8_FBgn0004369:11;Name=Ptp99A-in;Parent=FBtr0303148;parent_type=mRNA" - - - -	16551	25,279,419 – 25,279,525	+	5	120	81.24	-2.11	0.54	0.615022
12040	dm3.chr3R	25,279,419 – 25,279,525		16552	25,279,419 – 25,279,525	-	5	120	81.24	-1.88	0.64	0.740914
12041	dm3.chr3R	25,288,132 – 25,288,234	- - CDS="CDS;ID=CDS_FBgn0004369:10_224;Name=Ptp99A-cds;Parent=FBtr0085422,FBtr0085424;parent_type=mRNA" - - - - -	16553	25,288,132 – 25,288,234	-	12	120	72.08	-2.04	0.40	0.902452
12042	dm3.chr3R	25,292,749 – 25,292,839	- - - intron="intron;ID=intron_FBgn0004369:10_FBgn0004369:12;Name=Ptp99A-in;Parent=FBtr0085424;parent_type=mRNA" - - - -	16554	25,292,749 – 25,292,839	+	4	93	88.16	-2.77	0.71	0.947078
12043	dm3.chr3R	25,293,292 – 25,293,364	- - - intron="intron;ID=intron_FBgn0004369:10_FBgn0004369:12;Name=Ptp99A-in;Parent=FBtr0085424;parent_type=mRNA" - - - -	16555	25,293,292 – 25,293,364	+	4	72	56.44	-1.66	0.37	0.939118
12044	dm3.chr3R	25,298,537 – 25,298,641	- - - intron="intron;ID=intron_FBgn0004369:12_FBgn0004369:13;Name=Ptp99A-in;Parent=FBtr0085424;parent_type=mRNA" - - - -	16556	25,298,537 – 25,298,641	+	5	112	71.16	-1.31	0.58	0.721813
12045	dm3.chr3R	25,299,365 – 25,299,474	- - - intron="intron;ID=intron_FBgn0004369:13_FBgn0004369:14;Name=Ptp99A-in;Parent=FBtr0085422,FBtr0085424,FBtr0085423,FBtr0303148;parent_type=mRNA" - - - -	16557	25,299,365 – 25,299,458	+	6	96	78.67	-1.73	0.77	0.956723
				16558	25,299,365 – 25,299,458	-	6	96	78.67	-1.51	0.62	0.666715
				16559	25,299,365 – 25,299,474	+	7	114	70.79	-2.44	0.53	0.996839
				16560	25,299,365 – 25,299,474	-	7	114	70.79	-1.37	0.53	0.888588
12046	dm3.chr3R	25,305,221 – 25,305,276	- - - intron="intron;ID=intron_FBgn0004369:15_FBgn0004369:17;Name=Ptp99A-in;Parent=FBtr0085422,FBtr0085424,FBtr0085423,FBtr0303148;parent_type=mRNA" - - - -	16561	25,305,221 – 25,305,276	-	5	61	66.38	-2.72	0.22	0.689180
12047	dm3.chr3R	25,306,170 – 25,306,262	- - - intron="intron;ID=intron_FBgn0004369:16_FBgn0004369:18;Name=Ptp99A-in;Parent=FBtr0303454;parent_type=mRNA" - - - -	16562	25,306,170 – 25,306,262	+	4	107	62.87	-0.85	0.79	0.931717
12048	dm3.chr3R	25,315,905 – 25,315,998	- - CDS="CDS;ID=CDS_FBgn0039664:2_224;Name=CG2006-cds;Parent=FBtr0085425;parent_type=mRNA" - - - - -	16563	25,315,905 – 25,315,998	+	13	93	83.82	-1.84	0.58	0.711547
12049	dm3.chr3R	25,317,732 – 25,317,835	- - CDS="CDS;ID=CDS_CG2310:4_40;Name=CG2310-cds;Parent=FBtr0085433,FBtr0085434;parent_type=mRNA" - - - - -	16564	25,317,732 – 25,317,835	-	12	120	75.92	-1.64	0.45	0.520320
12050	dm3.chr3R	25,319,161 – 25,319,279	- - - - - - - -	16565	25,319,161 – 25,319,279	+	6	136	71.63	-1.55	0.55	0.919161
12051	dm3.chr3R	25,321,900 – 25,322,070	- - - intron="intron;ID=intron_CG2010:2_CG2010:3;Name=CG2010-in;Parent=FBtr0085427;parent_type=mRNA" - - - -	16566	25,321,900 – 25,322,070	-	3	177	83.02	-2.22	0.74	0.890197
12052	dm3.chr3R	25,324,623 – 25,324,727	- - - - - - - -	16567	25,324,623 – 25,324,727	-	4	104	90.42	-1.33	0.92	0.739064
12053	dm3.chr3R	25,333,365 – 25,333,481	- - - - - - - -	16568	25,333,365 – 25,333,467	+	10	114	79.08	-1.65	0.83	0.964939
12053	dm3.chr3R	25,333,365 – 25,333,481	- - - - - - - -	16569	25,333,387 – 25,333,481	+	10	109	83.34	-2.00	0.82	0.967644
12054	dm3.chr3R	25,336,423 – 25,336,513	- - - - - - - -	16570	25,336,423 – 25,336,513	-	6	92	89.70	-2.14	0.74	0.743676
12055	dm3.chr3R	25,338,097 – 25,338,176	- - - - - - - -	16571	25,338,097 – 25,338,176	+	4	81	74.31	-1.17	0.81	0.880772
12056	dm3.chr3R	25,339,325 – 25,339,432	- - - - - - - -	16572	25,339,325 – 25,339,432	-	11	111	79.57	-1.26	0.66	0.704821
12057	dm3.chr3R	25,339,547 – 25,339,668	- - - - - - - -	16573	25,339,547 – 25,339,668	+	4	133	81.28	-2.41	0.80	0.983400
12057	dm3.chr3R	25,339,547 – 25,339,668	- - - - - - - -	16574	25,339,547 – 25,339,668	-	4	133	81.28	-3.06	0.76	0.995665
12058	dm3.chr3R	25,350,626 – 25,350,746	- - - - - - - -	16575	25,350,626 – 25,350,746	-	12	120	94.19	-1.58	0.93	0.857281
12059	dm3.chr3R	25,352,558 – 25,352,650	- - - - - - - -	16576	25,352,558 – 25,352,650	+	11	115	81.33	-2.20	0.63	0.934081
12060	dm3.chr3R	25,360,823 – 25,360,921	- - - - - - - -	16577	25,360,823 – 25,360,921	+	11	119	80.45	-1.93	0.57	0.723570
12060	dm3.chr3R	25,360,823 – 25,360,921	- - - - - - - -	16578	25,360,823 – 25,360,921	-	11	119	80.45	-3.12	0.61	0.995556
12061	dm3.chr3R	25,364,568 – 25,364,660	- - - - - - - -	16579	25,364,568 – 25,364,660	+	6	112	67.37	-1.28	0.54	0.848097
12061	dm3.chr3R	25,364,568 – 25,364,660	- - - - - - - -	16580	25,364,568 – 25,364,660	-	6	112	67.37	-1.81	0.45	0.901208
12062	dm3.chr3R	25,369,345 – 25,369,442	- - - - - - - -	16581	25,369,345 – 25,369,442	+	4	103	79.44	-1.78	0.72	0.845086
12063	dm3.chr3R	25,373,265 – 25,373,340	- - - - - - - -	16582	25,373,265 – 25,373,340	+	12	77	94.13	-2.17	0.90	0.952499
12063	dm3.chr3R	25,373,265 – 25,373,340	- - - - - - - -	16583	25,373,265 – 25,373,340	-	12	77	94.13	-2.36	0.91	0.975391
12064	dm3.chr3R	25,393,455 – 25,393,524	- - - - - - - -	16584	25,393,455 – 25,393,524	-	7	69	73.51	-2.17	0.43	0.900220
12065	dm3.chr3R	25,396,614 – 25,396,687	- - - - - - - -	16585	25,396,614 – 25,396,687	-	10	81	66.51	-1.00	0.39	0.521311
12066	dm3.chr3R	25,398,596 – 25,398,695	- - - - - - - -	16586	25,398,596 – 25,398,695	-	12	118	88.80	-1.63	0.85	0.807527
12067	dm3.chr3R	25,404,417 – 25,404,550	- - - - - - - -	16587	25,404,417 – 25,404,528	+	9	114	72.99	-1.98	0.56	0.990927
				16588	25,404,417 – 25,404,528	-	9	114	72.99	-1.66	0.59	0.981275
				16589	25,404,454 – 25,404,550	+	12	115	74.95	-1.92	0.63	0.979890
				16590	25,404,454 – 25,404,550	-	12	115	74.95	-2.12	0.65	0.991100
12068	dm3.chr3R	25,406,082 – 25,406,220	- - - - - - - -	16591	25,406,082 – 25,406,180	+	8	113	70.52	-1.85	0.47	0.955004
				16592	25,406,082 – 25,406,180	-	8	113	70.52	-1.06	0.51	0.682735
				16593	25,406,110 – 25,406,220	+	8	113	81.76	-1.79	0.59	0.601235
				16594	25,406,110 – 25,406,220	-	8	113	81.76	-1.71	0.61	0.596666
12069	dm3.chr3R	25,418,279 – 25,418,453	- - - intron="intron;ID=intron_FBgn0086361:1_FBgn0086361:4;Name=alph-in;Parent=FBtr0085442,FBtr0085443,FBtr0085444;parent_type=mRNA" - - - -	16595	25,418,279 – 25,418,453	+	4	192	85.05	-2.15	0.73	0.856076
12069	dm3.chr3R	25,418,279 – 25,418,453		16596	25,418,279 – 25,418,453	-	4	192	85.05	-2.21	0.75	0.904916
12070	dm3.chr3R	25,438,661 – 25,438,764	- - - intron="intron;ID=intron_FBgn0086361:11_FBgn0086361:12;Name=alph-in;Parent=FBtr0085444;parent_type=mRNA" - - - -	16597	25,438,661 – 25,438,764	-	6	105	78.69	-1.86	0.70	0.954168
12071	dm3.chr3R	25,447,259 – 25,447,361	- - - - - - - -	16598	25,447,259 – 25,447,361	-	10	111	67.31	-0.92	0.50	0.847725
12072	dm3.chr3R	25,458,525 – 25,458,630	- - - - - - - -	16599	25,458,525 – 25,458,630	-	4	106	77.20	-0.96	0.76	0.526269
12073	dm3.chr3R	25,467,186 – 25,467,305	- - CDS="CDS;ID=CDS_FBgn0015129:5_162;Name=DopR2-cds;Parent=FBtr0085467,FBtr0085468;parent_type=mRNA" - - - - -	16600	25,467,186 – 25,467,305	-	15	121	75.22	-0.80	0.52	0.627073
12074	dm3.chr3R	25,487,435 – 25,487,488	- - - - - - - -	16601	25,487,435 – 25,487,488	+	8	58	88.06	-1.23	0.86	0.581500
12075	dm3.chr3R	25,495,026 – 25,495,131	- - - intron="intron;ID=intron_FBgn0039677:1_FBgn0039677:2;Name=CG18110-in;Parent=FBtr0085449;parent_type=mRNA" - - - -	16602	25,495,026 – 25,495,131	-	3	120	76.54	-2.04	0.64	0.856471
12076	dm3.chr3R	25,512,113 – 25,512,176	- - - intron="intron;ID=intron_CG7584:1_CG7584:2;Name=Obp99c-in;Parent=FBtr0085463;parent_type=mRNA" - - - -	16603	25,512,113 – 25,512,176	-	6	72	76.67	-1.03	0.71	0.619241
12077	dm3.chr3R	25,527,043 – 25,527,104	- - - - - - - -	16604	25,527,043 – 25,527,104	-	5	61	93.11	-1.58	0.94	0.872733
12078	dm3.chr3R	25,537,169 – 25,537,275	- - - - - - - -	16605	25,537,169 – 25,537,275	+	9	113	72.21	-1.89	0.47	0.964410
12079	dm3.chr3R	25,540,566 – 25,540,682	- - CDS="CDS;ID=CDS_CG15505:1_48;Name=Obp99d-cds;Parent=FBtr0085455;parent_type=mRNA" - - - - -	16606	25,540,566 – 25,540,682	+	10	119	65.19	-1.14	0.35	0.548639
12080	dm3.chr3R	25,540,940 – 25,541,070	- - CDS="CDS;ID=CDS_FBgn0250832:2_243;Name=Dup99B-cds;Parent=FBtr0305053;parent_type=mRNA" - - - - -	16607	25,540,940 – 25,541,032	-	4	93	81.44	-1.64	0.68	0.563877
				16608	25,540,965 – 25,541,070	+	5	117	67.21	-1.07	0.49	0.547109
				16609	25,540,965 – 25,541,070	-	5	117	67.21	-1.13	0.47	0.513952
12081	dm3.chr3R	25,567,250 – 25,567,373	- - - intron="intron;ID=intron_FBgn0039690:6_FBgn0039690:8;Name=CG1969-in;Parent=FBtr0306104;parent_type=mRNA" - - - -	16610	25,567,250 – 25,567,356	+	11	113	74.14	-3.54	0.44	0.999049
12081	dm3.chr3R	25,567,250 – 25,567,373		16611	25,567,283 – 25,567,373	+	11	100	75.52	-2.19	0.68	0.995513
12082	dm3.chr3R	25,575,232 – 25,575,340	- - - - - - - -	16612	25,575,232 – 25,575,340	+	6	108	75.00	-1.26	0.56	0.686446
12082	dm3.chr3R	25,575,232 – 25,575,340	- - - - - - - -	16613	25,575,232 – 25,575,340	-	6	108	75.00	-1.35	0.51	0.581824
12083	dm3.chr3R	25,583,245 – 25,583,349	- - - - - - - -	16614	25,583,245 – 25,583,349	+	7	112	63.40	-1.52	0.40	0.911828
12084	dm3.chr3R	25,584,957 – 25,585,057	- - - - - - - -	16615	25,584,957 – 25,585,057	+	9	111	72.84	-1.30	0.58	0.938799
12084	dm3.chr3R	25,584,957 – 25,585,057	- - - - - - - -	16616	25,584,957 – 25,585,057	-	9	111	72.84	-1.00	0.56	0.790012
12085	dm3.chr3R	25,595,831 – 25,595,886	- - - intron="intron;ID=intron_FBgn0001297:1_FBgn0001297:5;Name=kay-in;Parent=FBtr0099988;parent_type=mRNA" - - - -	16617	25,595,831 – 25,595,886	+	5	55	87.82	-1.97	0.85	0.924272
12086	dm3.chr3R	25,596,689 – 25,596,786	- - - intron="intron;ID=intron_FBgn0001297:1_FBgn0001297:5;Name=kay-in;Parent=FBtr0099988;parent_type=mRNA" - - - -	16618	25,596,689 – 25,596,786	-	5	105	85.47	-2.32	0.80	0.968802
12087	dm3.chr3R	25,597,427 – 25,597,558	- - - intron="intron;ID=intron_FBgn0001297:1_FBgn0001297:5;Name=kay-in;Parent=FBtr0099988;parent_type=mRNA" - - - -	16619	25,597,427 – 25,597,533	+	7	108	78.61	-1.98	0.57	0.911815
12087	dm3.chr3R	25,597,427 – 25,597,558		16620	25,597,462 – 25,597,558	+	5	98	93.69	-1.61	0.86	0.593600
12088	dm3.chr3R	25,598,582 – 25,598,725	- - - intron="intron;ID=intron_FBgn0001297:1_FBgn0001297:5;Name=kay-in;Parent=FBtr0099988;parent_type=mRNA" - - - -	16621	25,598,582 – 25,598,686	+	3	106	97.47	-3.04	0.86	0.976887
12088	dm3.chr3R	25,598,582 – 25,598,725		16622	25,598,614 – 25,598,725	+	3	111	100.00	-1.45	1.00	0.871153
12089	dm3.chr3R	25,603,445 – 25,603,552	- - - intron="intron;ID=intron_FBgn0001297:2_FBgn0001297:5;Name=kay-in;Parent=FBtr0099989;parent_type=mRNA" - - - -	16623	25,603,445 – 25,603,552	-	6	117	72.12	-1.42	0.48	0.521480
12090	dm3.chr3R	25,604,186 – 25,604,282	- - - intron="intron;ID=intron_FBgn0001297:2_FBgn0001297:5;Name=kay-in;Parent=FBtr0099989;parent_type=mRNA" - - - -	16624	25,604,186 – 25,604,282	+	7	105	62.76	-0.56	0.45	0.573135
12091	dm3.chr3R	25,607,892 – 25,607,993	- - - intron="intron;ID=intron_FBgn0001297:2_FBgn0001297:5;Name=kay-in;Parent=FBtr0099989;parent_type=mRNA" - - - -	16625	25,607,892 – 25,607,993	+	7	112	76.10	-1.69	0.47	0.614207
12092	dm3.chr3R	25,614,379 – 25,614,431	- - - intron="intron;ID=intron_FBgn0001297:3_FBgn0001297:5;Name=kay-in;Parent=FBtr0099990;parent_type=mRNA" - - - -	16626	25,614,379 – 25,614,431	-	10	56	87.63	-3.05	0.39	0.538211
12093	dm3.chr3R	25,615,378 – 25,615,486	- - - intron="intron;ID=intron_FBgn0001297:3_FBgn0001297:5;Name=kay-in;Parent=FBtr0099990;parent_type=mRNA" - - - -	16627	25,615,378 – 25,615,486	+	3	108	89.14	-1.76	0.92	0.910442
12094	dm3.chr3R	25,624,903 – 25,625,023	- - CDS="CDS;ID=CDS_CG7837:1_40;Name=CG7837-cds;Parent=FBtr0085537;parent_type=mRNA" - - - - -	16628	25,624,903 – 25,625,023	-	12	120	68.29	-1.53	0.42	0.938877
12095	dm3.chr3R	25,632,733 – 25,632,835	- - - - - - - -	16629	25,632,733 – 25,632,835	+	6	108	73.64	-0.71	0.68	0.571104
12096	dm3.chr3R	25,632,872 – 25,632,971	- - - - - - - -	16630	25,632,872 – 25,632,971	+	6	120	70.82	-1.05	0.60	0.650907
12097	dm3.chr3R	25,644,210 – 25,644,332	- - - - - - - -	16631	25,644,210 – 25,644,321	+	4	111	89.26	-1.58	0.88	0.778762
				16632	25,644,221 – 25,644,332	+	4	111	83.17	-2.33	0.92	0.990554
				16633	25,644,221 – 25,644,332	-	4	111	83.17	-1.95	0.67	0.640889
12098	dm3.chr3R	25,654,901 – 25,654,996	- - - intron="intron;ID=intron_FBgn0039705:6_FBgn0039705:4;Name=CG31033-in;Parent=FBtr0085528,FBtr0085529,FBtr0085530,FBtr0300024;parent_type=mRNA" - - - -	16634	25,654,901 – 25,654,996	-	5	104	76.43	-2.87	0.42	0.942343
12099	dm3.chr3R	25,655,456 – 25,655,568	- - - intron="intron;ID=intron_FBgn0039705:6_FBgn0039705:4;Name=CG31033-in;Parent=FBtr0085528,FBtr0085529,FBtr0085530,FBtr0300024;parent_type=mRNA" - - - -	16635	25,655,456 – 25,655,568	-	6	115	72.30	-1.18	0.49	0.592905
12100	dm3.chr3R	25,662,876 – 25,662,995	- - CDS="CDS;ID=CDS_FBgn0039707:4_190;Name=CG15510-cds;Parent=FBtr0301746;parent_type=mRNA" - - - - -	16636	25,662,876 – 25,662,995	+	5	120	84.59	-2.30	0.63	0.803405
12101	dm3.chr3R	25,666,488 – 25,666,578	- - - - - - - -	16637	25,666,488 – 25,666,578	-	6	108	66.54	-0.66	0.59	0.797471
12102	dm3.chr3R	25,667,732 – 25,667,833	- - - intron="intron;ID=intron_FBgn0039709:1_FBgn0039709:2;Name=Cad99C-in;Parent=FBtr0085488;parent_type=mRNA" - - - -	16638	25,667,732 – 25,667,833	+	6	120	67.60	-1.64	0.54	0.953856
12103	dm3.chr3R	25,668,833 – 25,668,927	- - - intron="intron;ID=intron_FBgn0039709:2_FBgn0039709:3;Name=Cad99C-in;Parent=FBtr0085488;parent_type=mRNA" - - - -	16639	25,668,833 – 25,668,927	+	4	112	66.11	-1.23	0.53	0.600173
12103	dm3.chr3R	25,668,833 – 25,668,927		16640	25,668,833 – 25,668,927	-	4	112	66.11	-2.88	0.64	0.999078
12104	dm3.chr3R	25,679,769 – 25,679,859	- - - - - - - -	16641	25,679,769 – 25,679,859	+	10	99	65.79	-0.95	0.38	0.591947
12105	dm3.chr3R	25,683,188 – 25,683,254	- - - - - - - -	16642	25,683,188 – 25,683,254	-	5	66	83.94	-2.07	0.78	0.945749
12106	dm3.chr3R	25,684,849 – 25,684,969	- - - - - - - -	16643	25,684,849 – 25,684,969	+	5	120	92.75	-1.64	0.84	0.577036
12107	dm3.chr3R	25,685,433 – 25,685,547	- - - - - - - -	16644	25,685,433 – 25,685,547	+	5	120	75.92	-1.48	0.69	0.873944
12108	dm3.chr3R	25,691,585 – 25,691,721	- - - intron="intron;ID=intron_FBgn0039714:7_FBgn0039714:5;Name=CG7816-in;Parent=FBtr0089921;parent_type=mRNA" - - - -	16645	25,691,585 – 25,691,692	+	5	107	91.48	-1.53	0.85	0.585694
				16646	25,691,585 – 25,691,692	-	5	107	91.48	-2.60	0.86	0.978169
				16647	25,691,614 – 25,691,721	+	5	111	89.18	-2.25	0.84	0.951343
				16648	25,691,614 – 25,691,721	-	5	111	89.18	-2.19	0.85	0.949292
12109	dm3.chr3R	25,705,747 – 25,705,815	- - - intron="intron;ID=intron_CG31038:6_CG31038:5;Name=CG31038-in;Parent=FBtr0085496;parent_type=mRNA" - - - -	16649	25,705,747 – 25,705,815	+	5	84	75.51	-1.36	0.64	0.562376
12110	dm3.chr3R	25,726,965 – 25,727,092	- - - intron="intron;ID=intron_CG31038:3_CG31038:4;Name=CG31038-in;Parent=FBtr0085499,FBtr0085494,FBtr0085497,FBtr0085498;parent_type=mRNA" - - - -	16650	25,726,965 – 25,727,055	+	6	109	81.05	-1.28	0.75	0.556292
12110	dm3.chr3R	25,726,965 – 25,727,092		16651	25,726,996 – 25,727,092	+	7	117	63.86	-0.99	0.46	0.711541
12111	dm3.chr3R	25,727,716 – 25,727,766	- - - intron="intron;ID=intron_CG31038:3_CG31038:4;Name=CG31038-in;Parent=FBtr0085499,FBtr0085494,FBtr0085497,FBtr0085498;parent_type=mRNA" - - - -	16652	25,727,716 – 25,727,766	+	3	50	100.00	-1.38	1.00	0.846540
12112	dm3.chr3R	25,744,999 – 25,745,108	- - - intron="intron;ID=intron_CG7875:3_CG7875:4;Name=trp-in;Parent=FBtr0085513;parent_type=mRNA" - - - -	16653	25,744,999 – 25,745,108	-	6	113	69.67	-1.82	0.44	0.939082
12113	dm3.chr3R	25,753,228 – 25,753,324	- - - intron="intron;ID=intron_FBgn0039723:1_FBgn0039723:2;Name=CG15522-in;Parent=FBtr0085503;parent_type=mRNA" - - - -	16654	25,753,228 – 25,753,324	-	4	100	93.20	-1.08	0.93	0.500000
12114	dm3.chr3R	25,778,076 – 25,778,134	- - - intron="intron;ID=intron_FBgn0004622:5_FBgn0004622:4;Name=Takr99D-in;Parent=FBtr0085507,FBtr0301656;parent_type=mRNA" - - - -	16655	25,778,076 – 25,778,134	+	6	67	77.63	-1.04	0.83	0.807337
12115	dm3.chr3R	25,786,624 – 25,786,718	- - - intron="intron;ID=intron_FBgn0004622:10_FBgn0004622:9;Name=Takr99D-in;Parent=FBtr0085507,FBtr0301656;parent_type=mRNA" - - - -	16656	25,786,624 – 25,786,718	+	5	104	73.02	-1.46	0.58	0.727404
12116	dm3.chr3R	25,794,636 – 25,794,757	- - - - - - - -	16657	25,794,636 – 25,794,757	+	7	143	61.43	-1.29	0.35	0.586714
12117	dm3.chr3R	25,798,243 – 25,798,298	- - - - - - - -	16658	25,798,243 – 25,798,298	-	4	55	88.48	-1.45	0.82	0.500000
12118	dm3.chr3R	25,805,424 – 25,805,539	- - - - - - - -	16659	25,805,424 – 25,805,539	+	3	120	53.98	-3.21	0.35	0.998417
12118	dm3.chr3R	25,805,424 – 25,805,539	- - - - - - - -	16660	25,805,424 – 25,805,539	-	3	120	53.98	-2.35	0.31	0.939215
12119	dm3.chr3R	25,805,643 – 25,805,755	- - - - - - - -	16661	25,805,643 – 25,805,755	+	8	131	72.88	-1.81	0.38	0.602897
12120	dm3.chr3R	25,806,672 – 25,806,783	- - - - - - - -	16662	25,806,672 – 25,806,783	+	5	115	74.00	-1.96	0.48	0.783539
12121	dm3.chr3R	25,835,880 – 25,835,978	- - - - - - - -	16663	25,835,880 – 25,835,978	+	5	101	86.37	-2.02	0.74	0.805516
12121	dm3.chr3R	25,835,880 – 25,835,978	- - - - - - - -	16664	25,835,880 – 25,835,978	-	5	101	86.37	-1.77	0.74	0.624334
12122	dm3.chr3R	25,843,800 – 25,843,861	- - - intron="intron;ID=intron_CG7921:7_CG7921:8;Name=Mgat2-in;Parent=FBtr0085602;parent_type=mRNA" - - - -	16665	25,843,800 – 25,843,861	+	4	61	55.19	-1.77	0.81	0.998674
12122	dm3.chr3R	25,843,800 – 25,843,861		16666	25,843,800 – 25,843,861	-	4	61	55.19	-1.37	0.65	0.996168
12123	dm3.chr3R	25,846,614 – 25,846,743	- - - intron="intron;ID=intron_CG7921:1_CG7921:2;Name=Mgat2-in;Parent=FBtr0085602;parent_type=mRNA" - - - -	16667	25,846,614 – 25,846,716	-	6	124	74.14	-1.38	0.56	0.573828
12123	dm3.chr3R	25,846,614 – 25,846,743		16668	25,846,644 – 25,846,743	-	6	120	75.22	-1.64	0.58	0.779514
12124	dm3.chr3R	25,876,323 – 25,876,430	- - - intron="intron;ID=intron_FBgn0039742:2_FBgn0039742:1;Name=CG15528-in;Parent=FBtr0303240;parent_type=mRNA" - - - -	16669	25,876,323 – 25,876,430	+	11	118	83.43	-1.87	0.66	0.851738
12125	dm3.chr3R	25,882,496 – 25,882,601	- - - - - - - -	16670	25,882,496 – 25,882,601	+	5	112	79.58	-1.70	0.85	0.961055
12126	dm3.chr3R	25,886,324 – 25,886,428	- - - intron="intron;ID=intron_FBgn0015542:1_FBgn0015542:2;Name=sima-in;Parent=FBtr0085565,FBtr0114597;parent_type=mRNA" - - - -	16671	25,886,324 – 25,886,428	+	5	114	78.90	-1.63	0.76	0.916992
12126	dm3.chr3R	25,886,324 – 25,886,428		16672	25,886,324 – 25,886,428	-	5	114	78.90	-0.97	0.76	0.514449
12127	dm3.chr3R	25,887,045 – 25,887,141	- - - intron="intron;ID=intron_FBgn0015542:1_FBgn0015542:2;Name=sima-in;Parent=FBtr0085565,FBtr0114597;parent_type=mRNA" - - - -	16673	25,887,045 – 25,887,141	+	5	114	74.62	-1.31	0.62	0.737577
12128	dm3.chr3R	25,889,417 – 25,889,530	- - - intron="intron;ID=intron_FBgn0015542:1_FBgn0015542:2;Name=sima-in;Parent=FBtr0085565,FBtr0114597;parent_type=mRNA" - - - -	16674	25,889,417 – 25,889,530	-	5	120	73.10	-1.95	0.46	0.802697
12129	dm3.chr3R	25,892,289 – 25,892,393	- - - intron="intron;ID=intron_FBgn0015542:1_FBgn0015542:2;Name=sima-in;Parent=FBtr0085565,FBtr0114597;parent_type=mRNA" - - - -	16675	25,892,289 – 25,892,393	+	4	114	85.63	-2.42	0.65	0.806108
12130	dm3.chr3R	25,921,494 – 25,921,544	- - - intron="intron;ID=intron_FBgn0015542:7_FBgn0015542:8;Name=sima-in;Parent=FBtr0085565;parent_type=mRNA" - - - -	16676	25,921,494 – 25,921,544	+	3	62	68.39	-1.87	0.62	0.912905
12131	dm3.chr3R	25,927,988 – 25,928,064	- - - intron="intron;ID=intron_FBgn0015542:7_FBgn0015542:8;Name=sima-in;Parent=FBtr0085565;parent_type=mRNA" - - - -	16677	25,927,988 – 25,928,064	-	6	86	78.99	-1.45	0.71	0.786847
12132	dm3.chr3R	25,967,950 – 25,968,053	- - - - - - - -	16678	25,967,950 – 25,968,053	-	7	118	61.52	-1.93	0.33	0.941191
12133	dm3.chr3R	26,005,263 – 26,005,332	- - - - - - - -	16679	26,005,263 – 26,005,332	-	7	73	59.20	-0.69	0.56	0.953514
12134	dm3.chr3R	26,009,765 – 26,009,922	- - - - - - - -	16680	26,009,765 – 26,009,861	+	7	108	80.03	-1.57	0.73	0.805725
				16681	26,009,792 – 26,009,888	+	7	107	77.86	-2.11	0.74	0.985202
				16682	26,009,792 – 26,009,888	-	7	107	77.86	-3.00	0.77	0.998518
				16683	26,009,823 – 26,009,922	+	8	118	62.94	-1.77	0.51	0.991069
				16684	26,009,823 – 26,009,922	-	8	118	62.94	-2.32	0.49	0.998017
12135	dm3.chr3R	26,012,888 – 26,012,980	- - - intron="intron;ID=intron_FBgn0039754:3_FBgn0039754:2;Name=CG9747-in;Parent=FBtr0085573;parent_type=mRNA" - - - -	16685	26,012,888 – 26,012,980	+	11	116	75.40	-2.06	0.53	0.959488
12135	dm3.chr3R	26,012,888 – 26,012,980		16686	26,012,888 – 26,012,980	-	11	116	75.40	-2.24	0.57	0.986877
12136	dm3.chr3R	26,014,857 – 26,014,908	- - - intron="intron;ID=intron_FBgn0039754:4_FBgn0039754:3;Name=CG9747-in;Parent=FBtr0085573;parent_type=mRNA" - - - -	16687	26,014,857 – 26,014,908	+	6	65	74.26	-1.39	0.62	0.718477
12137	dm3.chr3R	26,015,033 – 26,015,094	- - - intron="intron;ID=intron_FBgn0039754:4_FBgn0039754:3;Name=CG9747-in;Parent=FBtr0085573;parent_type=mRNA" - - - -	16688	26,015,033 – 26,015,094	+	4	67	77.34	-2.18	0.67	0.950136
12138	dm3.chr3R	26,017,252 – 26,017,317	- - - - - - - -	16689	26,017,252 – 26,017,317	-	3	65	94.85	-1.45	0.95	0.790507
12139	dm3.chr3R	26,019,862 – 26,019,955	- - - - - - - -	16690	26,019,862 – 26,019,955	+	7	120	64.45	-1.15	0.42	0.514592
12140	dm3.chr3R	26,022,190 – 26,022,309	- - - - - - - -	16691	26,022,190 – 26,022,294	-	4	107	91.63	-1.38	0.92	0.738721
				16692	26,022,219 – 26,022,309	+	6	91	74.47	-1.95	0.57	0.970404
				16693	26,022,219 – 26,022,309	-	6	91	74.47	-1.61	0.50	0.772652
12141	dm3.chr3R	26,025,417 – 26,025,536	- - - intron="intron;ID=intron_FBgn0039756:6_FBgn0039756:5;Name=CG9743-in;Parent=FBtr0085571;parent_type=mRNA" - - - -	16694	26,025,417 – 26,025,520	+	4	103	81.55	-3.19	0.57	0.987157
12141	dm3.chr3R	26,025,417 – 26,025,536		16695	26,025,433 – 26,025,536	+	4	103	80.91	-3.48	0.73	0.998295
12142	dm3.chr3R	26,030,244 – 26,030,356	- - - - - - - -	16696	26,030,244 – 26,030,356	+	4	112	79.64	-1.54	0.73	0.739529
12143	dm3.chr3R	26,030,995 – 26,031,165	- - - - - - - -	16697	26,030,995 – 26,031,091	+	6	113	79.00	-2.16	0.54	0.845093
				16698	26,030,995 – 26,031,091	-	6	113	79.00	-2.69	0.53	0.968641
				16699	26,031,051 – 26,031,165	-	8	120	73.94	-1.25	0.51	0.584008
12144	dm3.chr3R	26,032,567 – 26,032,647	FBnoncoding="snoRNA;ID=FBtr0091777;Name=snoRNA:Psi28S-2149-RA;Parent=FBgn0086664;Alias=snoRNA:143-RA;Dbxref=FlyBase_Annotation_IDs:CR33776-RA,REFSEQ:NR_002505;score_text=Moderately" - - intron="intron;ID=intron_CG1883:3_CG1883:4;Name=RpS7-in;Parent=FBtr0089425,FBtr0089422,FBtr0089423;parent_type=mRNA" - "Noncode_2.0=n3515_u3143_AJ544013_snoRNA_Drosophila\|5.0e-27" "unique_Noncode_2.0=u3143_snoRNA_Drosophila\|4.3e-27" -	16700	26,032,567 – 26,032,647	-	12	82	80.45	-1.44	0.84	0.944636
12145	dm3.chr3R	26,032,942 – 26,033,013	FBnoncoding="snoRNA;ID=FBtr0113595;Name=snoRNA:Psi18S-1377d-RA;Parent=FBgn0083048;Dbxref=FlyBase_Annotation_IDs:CR34626-RA,REFSEQ:NR_003916;score_text=Strongly" - - intron="intron;ID=intron_CG1883:3_CG1883:4;Name=RpS7-in;Parent=FBtr0089425,FBtr0089422,FBtr0089423;parent_type=mRNA" "Rfam_10.0=RF00543;snopsi18S-1377;AAGH01008165.1/15188-15323\|1.2e-33" - - -	16701	26,032,942 – 26,033,013	+	12	72	74.57	-1.15	0.52	0.751929
12145	dm3.chr3R	26,032,942 – 26,033,013		16702	26,032,942 – 26,033,013	-	12	72	74.57	-1.99	0.61	0.994730
12146	dm3.chr3R	26,033,042 – 26,033,188	FBnoncoding="snoRNA;ID=FBtr0113596;Name=snoRNA:Psi18S-1377c-RA;Parent=FBgn0083049;Dbxref=FlyBase_Annotation_IDs:CR34627-RA,REFSEQ:NR_003917;score_text=Strongly" - - intron="intron;ID=intron_CG1883:3_CG1883:4;Name=RpS7-in;Parent=FBtr0089425,FBtr0089422,FBtr0089423;parent_type=mRNA" "Rfam_10.0=RF00543;snopsi18S-1377;AASW01038454.1/969-1105\|4.0e-63" - - -	16703	26,033,042 – 26,033,188	+	12	168	67.52	-1.29	0.36	0.572816
12146	dm3.chr3R	26,033,042 – 26,033,188		16704	26,033,042 – 26,033,188	-	12	168	67.52	-1.53	0.59	0.994564
12147	dm3.chr3R	26,033,256 – 26,033,352	FBnoncoding="snoRNA;ID=FBtr0113597;Name=snoRNA:Psi18S-1377b-RA;Parent=FBgn0083050;Dbxref=FlyBase_Annotation_IDs:CR34628-RA,REFSEQ:NR_003918;score_text=Strongly" - - intron="intron;ID=intron_CG1883:3_CG1883:4;Name=RpS7-in;Parent=FBtr0089425,FBtr0089422,FBtr0089423;parent_type=mRNA" "Rfam_10.0=RF00543;snopsi18S-1377;AC009733.5/161548-161685\|2.1e-48" - - -	16705	26,033,256 – 26,033,352	-	12	101	66.63	-1.30	0.46	0.966825
12148	dm3.chr3R	26,033,508 – 26,033,622	FBnoncoding="snoRNA;ID=FBtr0091751;Name=snoRNA:Psi18S-1377a-RA;Parent=FBgn0086665;Alias=snoRNA:328-RA;Dbxref=FlyBase_Annotation_IDs:CR33750-RA,REFSEQ:NR_002506;score_text=Moderately" - - intron="intron;ID=intron_CG1883:3_CG1883:4;Name=RpS7-in;Parent=FBtr0089425,FBtr0089422,FBtr0089423;parent_type=mRNA" "Rfam_10.0=RF00543;snopsi18S-1377;AAKO01001320.1/98717-98855\|3.8e-44" - - -	16706	26,033,508 – 26,033,622	+	10	129	72.74	-1.32	0.57	0.900287
12148	dm3.chr3R	26,033,508 – 26,033,622		16707	26,033,508 – 26,033,622	-	10	129	72.74	-2.10	0.81	0.997501
12149	dm3.chr3R	26,046,504 – 26,046,555	- - - - - - - -	16708	26,046,504 – 26,046,555	-	5	57	86.52	-2.15	0.94	0.985628
12150	dm3.chr3R	26,047,160 – 26,047,256	- - - - - - - -	16709	26,047,160 – 26,047,256	+	12	115	80.45	-2.31	0.47	0.802154
12151	dm3.chr3R	26,049,028 – 26,049,131	- - - - - - - -	16710	26,049,028 – 26,049,131	+	8	109	73.54	-2.60	0.32	0.904220
12151	dm3.chr3R	26,049,028 – 26,049,131	- - - - - - - -	16711	26,049,028 – 26,049,131	-	8	109	73.54	-2.32	0.34	0.837923
12152	dm3.chr3R	26,069,271 – 26,069,365	- - - - - - - -	16712	26,069,271 – 26,069,365	+	7	108	74.70	-1.85	0.46	0.561495
12153	dm3.chr3R	26,072,127 – 26,072,243	- - - intron="intron;ID=intron_CG9733:1_CG9733:2;Name=CG9733-in;Parent=FBtr0085638;parent_type=mRNA" - - - -	16713	26,072,127 – 26,072,243	-	9	126	64.38	-1.35	0.35	0.753736
12154	dm3.chr3R	26,073,655 – 26,073,716	- - - - "Rfam_10.0=RF00005;tRNA;AANI01015473.1/3506-3585\|7.2e-10" - - -	16714	26,073,655 – 26,073,716	+	11	66	71.20	-0.55	0.79	0.927292
12154	dm3.chr3R	26,073,655 – 26,073,716		16715	26,073,655 – 26,073,716	-	11	66	71.20	-0.67	0.78	0.945753
12155	dm3.chr3R	26,074,338 – 26,074,448	FBnoncoding="tRNA;ID=FBtr0085636;Name=tRNA:CR31023-RA;Parent=FBgn0051023;Alias=CR31023-RA;Dbxref=FlyBase_Annotation_IDs:CR31023-RA;score_text=Weakly" tRNAscann="Leu_chr3R_trna38" - - "Rfam_10.0=RF00005;tRNA;AANI01015473.1/3506-3585\|8.2e-36" - - -	16716	26,074,338 – 26,074,448	+	13	120	82.75	-0.95	0.76	0.563825
12155	dm3.chr3R	26,074,338 – 26,074,448		16717	26,074,338 – 26,074,448	-	13	120	82.75	-2.87	0.80	0.997905
12156	dm3.chr3R	26,076,271 – 26,076,334	- - - - - - - -	16718	26,076,271 – 26,076,334	+	5	63	88.03	-2.16	0.65	0.556795
12157	dm3.chr3R	26,078,722 – 26,078,815	- - - - - - - -	16719	26,078,722 – 26,078,815	-	5	93	95.27	-1.30	0.94	0.671195
12158	dm3.chr3R	26,084,810 – 26,084,901	- - - - - - - -	16720	26,084,810 – 26,084,901	-	5	94	82.31	-2.22	0.54	0.663937
12159	dm3.chr3R	26,088,675 – 26,088,770	- - - - - - - -	16721	26,088,675 – 26,088,770	+	5	113	71.97	-1.13	0.60	0.530094
12160	dm3.chr3R	26,089,823 – 26,089,882	- - - - - - - -	16722	26,089,823 – 26,089,882	+	8	68	69.41	-1.46	0.38	0.569477
12161	dm3.chr3R	26,094,991 – 26,095,084	- - - - - - - -	16723	26,094,991 – 26,095,084	-	7	104	77.16	-1.61	0.74	0.933257
12162	dm3.chr3R	26,095,998 – 26,096,072	- - - - - - - -	16724	26,095,998 – 26,096,072	-	3	74	67.57	-2.13	0.70	0.990537
12163	dm3.chr3R	26,130,812 – 26,130,932	- - - intron="intron;ID=intron_CG15532:1_CG15532:2;Name=hdc-in;Parent=FBtr0085619,FBtr0085621;parent_type=mRNA" - - - -	16725	26,130,812 – 26,130,932	+	5	120	88.25	-2.21	0.71	0.786814
12163	dm3.chr3R	26,130,812 – 26,130,932		16726	26,130,812 – 26,130,932	-	5	120	88.25	-1.79	0.82	0.812618
12164	dm3.chr3R	26,139,682 – 26,139,735	- - - intron="intron;ID=intron_CG15532:2_CG15532:3;Name=hdc-in;Parent=FBtr0085619,FBtr0085621;parent_type=mRNA" - - - -	16727	26,139,682 – 26,139,735	-	5	54	95.53	-1.64	0.92	0.791016
12165	dm3.chr3R	26,157,863 – 26,157,923	- - - intron="intron;ID=intron_CG15532:2_CG15532:3;Name=hdc-in;Parent=FBtr0085619,FBtr0085621;parent_type=mRNA" - - - -	16728	26,157,863 – 26,157,923	-	5	61	78.97	-0.86	0.84	0.657884
12166	dm3.chr3R	26,169,225 – 26,169,340	- - - intron="intron;ID=intron_CG15532:2_CG15532:3;Name=hdc-in;Parent=FBtr0085619,FBtr0085621;parent_type=mRNA" - - - -	16729	26,169,225 – 26,169,318	+	10	104	70.55	-1.60	0.51	0.958558
12166	dm3.chr3R	26,169,225 – 26,169,340		16730	26,169,247 – 26,169,340	+	9	100	61.42	-0.94	0.43	0.871381
12167	dm3.chr3R	26,170,138 – 26,170,239	- - - intron="intron;ID=intron_CG15532:2_CG15532:3;Name=hdc-in;Parent=FBtr0085619,FBtr0085621;parent_type=mRNA" - - - -	16731	26,170,138 – 26,170,239	+	7	103	71.13	-0.92	0.52	0.563366
12168	dm3.chr3R	26,174,084 – 26,174,144	- - - intron="intron;ID=intron_CG15532:2_CG15532:3;Name=hdc-in;Parent=FBtr0085619,FBtr0085621;parent_type=mRNA" - - - -	16732	26,174,084 – 26,174,144	+	5	66	85.15	-1.88	0.96	0.982495
12169	dm3.chr3R	26,196,350 – 26,196,438	- - - - - - - -	16733	26,196,350 – 26,196,438	+	11	110	73.13	-1.86	0.54	0.956827
12169	dm3.chr3R	26,196,350 – 26,196,438	- - - - - - - -	16734	26,196,350 – 26,196,438	-	11	110	73.13	-1.40	0.47	0.555393
12170	dm3.chr3R	26,199,145 – 26,199,258	- - - - - - - -	16735	26,199,145 – 26,199,258	+	11	119	73.63	-0.86	0.65	0.783432
12170	dm3.chr3R	26,199,145 – 26,199,258	- - - - - - - -	16736	26,199,145 – 26,199,258	-	11	119	73.63	-1.26	0.63	0.926426
12171	dm3.chr3R	26,201,573 – 26,201,708	- - - - - - - -	16737	26,201,573 – 26,201,679	+	5	113	56.31	-1.79	0.60	0.999155
				16738	26,201,573 – 26,201,679	-	5	113	56.31	-1.60	0.55	0.997592
				16739	26,201,608 – 26,201,708	+	5	101	59.92	-2.03	0.61	0.999425
				16740	26,201,608 – 26,201,708	-	5	101	59.92	-1.62	0.53	0.995742
12172	dm3.chr3R	26,214,889 – 26,214,999	- - - - - - - -	16741	26,214,889 – 26,214,999	+	12	116	61.23	-0.73	0.37	0.513932
12173	dm3.chr3R	26,219,624 – 26,219,707	- - - - - - - -	16742	26,219,624 – 26,219,707	+	7	97	70.81	-0.63	0.61	0.524657
12173	dm3.chr3R	26,219,624 – 26,219,707	- - - - - - - -	16743	26,219,624 – 26,219,707	-	7	97	70.81	-0.66	0.66	0.696791
12174	dm3.chr3R	26,232,844 – 26,232,934	- - - - - - - -	16744	26,232,844 – 26,232,934	-	6	97	85.17	-2.02	0.72	0.858561
12175	dm3.chr3R	26,233,022 – 26,233,076	- - - - - - - -	16745	26,233,022 – 26,233,076	-	12	69	70.37	-1.91	0.44	0.931301
12176	dm3.chr3R	26,264,391 – 26,264,482	- - - intron="intron;ID=intron_FBgn0039770:7_FBgn0039770:6;Name=CG15537-in;Parent=FBtr0113310;parent_type=mRNA" - - - -	16746	26,264,391 – 26,264,482	+	6	109	79.13	-2.35	0.61	0.960554
12177	dm3.chr3R	26,268,002 – 26,268,098	- - - intron="intron;ID=intron_FBgn0039770:7_FBgn0039770:6;Name=CG15537-in;Parent=FBtr0113310;parent_type=mRNA" - - - -	16747	26,268,002 – 26,268,098	+	5	102	82.09	-1.86	0.66	0.751145
12177	dm3.chr3R	26,268,002 – 26,268,098		16748	26,268,002 – 26,268,098	-	5	102	82.09	-2.21	0.59	0.810530
12178	dm3.chr3R	26,275,100 – 26,275,190	- - - intron="intron;ID=intron_CG2139:2_CG2139:3;Name=aralar1-in;Parent=FBtr0085694,FBtr0085695,FBtr0085692,FBtr0085693;parent_type=mRNA" - - - -	16749	26,275,100 – 26,275,190	-	7	101	66.15	-1.01	0.49	0.879183
12179	dm3.chr3R	26,275,772 – 26,275,866	- - - intron="intron;ID=intron_CG2139:12_CG2139:2;Name=aralar1-in;Parent=FBtr0085694,FBtr0085695;parent_type=mRNA" - - - -	16750	26,275,772 – 26,275,866	+	5	96	68.51	-1.56	0.47	0.844585
12180	dm3.chr3R	26,285,636 – 26,285,726	- - - intron="intron;ID=intron_CG1471:1_CG1471:2;Name=CDase-in;Parent=FBtr0085645;parent_type=mRNA" - - - -	16751	26,285,636 – 26,285,726	+	7	92	66.46	-0.87	0.48	0.805040
12181	dm3.chr3R	26,290,193 – 26,290,298	- - - intron="intron;ID=intron_CG1471:4_CG1471:5;Name=CDase-in;Parent=FBtr0085645,FBtr0085646,FBtr0085647,FBtr0085648,FBtr0085649;parent_type=mRNA" - - - -	16752	26,290,193 – 26,290,298	+	3	105	93.02	-0.91	0.96	0.500000
12182	dm3.chr3R	26,293,846 – 26,293,944	- - - intron="intron;ID=intron_CG31022:1_CG31022:2;Name=PH4alphaEFB-in;Parent=FBtr0085650;parent_type=mRNA" - - - -	16753	26,293,846 – 26,293,944	+	4	99	69.71	-1.29	0.61	0.736720
12182	dm3.chr3R	26,293,846 – 26,293,944		16754	26,293,846 – 26,293,944	-	4	99	69.71	-1.84	0.58	0.935948
12183	dm3.chr3R	26,300,912 – 26,301,002	- - - intron="intron;ID=intron_CG31022:2_CG31022:3;Name=PH4alphaEFB-in;Parent=FBtr0085650;parent_type=mRNA" - - - -	16755	26,300,912 – 26,301,002	-	9	92	69.48	-0.81	0.53	0.752114
12184	dm3.chr3R	26,308,155 – 26,308,250	- - - intron="intron;ID=intron_CG31022:4_CG31022:5;Name=PH4alphaEFB-in;Parent=FBtr0085650;parent_type=mRNA" - - - -	16756	26,308,155 – 26,308,250	+	3	97	56.01	-0.91	0.55	0.844626
12184	dm3.chr3R	26,308,155 – 26,308,250		16757	26,308,155 – 26,308,250	-	3	97	56.01	-1.18	0.51	0.890021
12185	dm3.chr3R	26,308,659 – 26,308,808	- - - intron="intron;ID=intron_CG31022:4_CG31022:5;Name=PH4alphaEFB-in;Parent=FBtr0085650;parent_type=mRNA" - - - -	16758	26,308,659 – 26,308,778	+	5	120	70.59	-2.03	0.43	0.918915
12185	dm3.chr3R	26,308,659 – 26,308,808		16759	26,308,699 – 26,308,808	+	4	110	72.38	-1.89	0.60	0.949901
12186	dm3.chr3R	26,321,036 – 26,321,222	- - - intron="intron;ID=intron_CG9726:1_CG9726:2;Name=PH4alphaMP-in;Parent=FBtr0085689;parent_type=mRNA" - - - -	16760	26,321,036 – 26,321,126	+	7	106	60.60	-1.16	0.45	0.914011
12186	dm3.chr3R	26,321,036 – 26,321,222		16761	26,321,126 – 26,321,222	-	5	99	82.76	-2.23	0.55	0.664191
12187	dm3.chr3R	26,344,669 – 26,344,763	- - - intron="intron;ID=intron_CG2239:4_CG2239:5;Name=jdp-in;Parent=FBtr0085681;parent_type=mRNA" - - - -	16762	26,344,669 – 26,344,763	-	5	110	61.22	-1.25	0.39	0.631155
12188	dm3.chr3R	26,345,624 – 26,345,718	- - - intron="intron;ID=intron_CG2239:3_CG2239:7;Name=jdp-in;Parent=FBtr0085683;parent_type=mRNA" - - - -	16763	26,345,624 – 26,345,718	-	5	96	82.20	-2.01	0.59	0.609698
12189	dm3.chr3R	26,347,127 – 26,347,237	- - - intron="intron;ID=intron_CG2239:3_CG2239:7;Name=jdp-in;Parent=FBtr0085683;parent_type=mRNA" - - - -	16764	26,347,127 – 26,347,237	-	6	116	87.25	-1.97	0.67	0.576785
12190	dm3.chr3R	26,351,944 – 26,352,066	- - CDS="CDS;ID=CDS_CG2239:2_38;Name=jdp-cds;Parent=FBtr0085681,FBtr0085682,FBtr0085683;parent_type=mRNA" - - - - -	16765	26,351,944 – 26,352,066	+	14	137	68.02	-1.64	0.29	0.530436
12190	dm3.chr3R	26,351,944 – 26,352,066		16766	26,351,944 – 26,352,066	-	14	137	68.02	-1.38	0.49	0.969543
12191	dm3.chr3R	26,356,354 – 26,356,474	- - - - - - - -	16767	26,356,354 – 26,356,474	+	6	120	88.56	-1.78	0.78	0.727561
12192	dm3.chr3R	26,361,954 – 26,362,137	- - - intron="intron;ID=intron_FBgn0082582:6_FBgn0082582:15;Name=tmod-in;Parent=FBtr0085660,FBtr0302601,FBtr0302111;parent_type=mRNA" - - - -	16768	26,361,954 – 26,362,069	+	8	119	75.41	-1.64	0.53	0.840985
12192	dm3.chr3R	26,361,954 – 26,362,137		16769	26,362,032 – 26,362,137	+	4	115	74.69	-1.37	0.77	0.868333
12193	dm3.chr3R	26,381,883 – 26,381,985	- - - intron="intron;ID=intron_FBgn0082582:12_FBgn0082582:15;Name=tmod-in;Parent=FBtr0085661,FBtr0302600;parent_type=mRNA" - - - -	16770	26,381,883 – 26,381,985	+	6	113	75.17	-1.16	0.68	0.731939
12194	dm3.chr3R	26,387,659 – 26,387,751	- - - - - - - -	16771	26,387,659 – 26,387,751	-	3	92	95.65	-1.56	0.91	0.664490
12195	dm3.chr3R	26,392,898 – 26,392,991	- - - intron="intron;ID=intron_FBgn0082582:13_FBgn0082582:15;Name=tmod-in;Parent=FBtr0085662;parent_type=mRNA" - - - -	16772	26,392,898 – 26,392,991	-	5	101	92.92	-1.98	0.94	0.955109
12196	dm3.chr3R	26,393,007 – 26,393,098	- - - intron="intron;ID=intron_FBgn0082582:13_FBgn0082582:15;Name=tmod-in;Parent=FBtr0085662;parent_type=mRNA" - - - -	16773	26,393,007 – 26,393,098	+	5	95	81.86	-1.55	0.74	0.736316
12196	dm3.chr3R	26,393,007 – 26,393,098		16774	26,393,007 – 26,393,098	-	5	95	81.86	-2.19	0.71	0.945389
12197	dm3.chr3R	26,395,082 – 26,395,223	- - - intron="intron;ID=intron_FBgn0082582:13_FBgn0082582:15;Name=tmod-in;Parent=FBtr0085662;parent_type=mRNA" - - - -	16775	26,395,082 – 26,395,193	+	7	119	74.92	-1.93	0.59	0.951810
12197	dm3.chr3R	26,395,082 – 26,395,223		16776	26,395,115 – 26,395,223	+	7	110	68.82	-3.25	0.43	0.999249
12198	dm3.chr3R	26,397,458 – 26,397,508	- - - intron="intron;ID=intron_FBgn0082582:14_FBgn0082582:15;Name=tmod-in;Parent=FBtr0085663;parent_type=mRNA" - - - -	16777	26,397,458 – 26,397,508	-	3	51	75.00	-0.64	0.92	0.620539
12199	dm3.chr3R	26,399,021 – 26,399,123	- - - intron="intron;ID=intron_FBgn0082582:18_FBgn0082582:19;Name=tmod-in;Parent=FBtr0113483;parent_type=mRNA" - - - -	16778	26,399,021 – 26,399,123	+	8	115	75.78	-2.40	0.45	0.933706
12200	dm3.chr3R	26,400,670 – 26,400,813	- - - intron="intron;ID=intron_FBgn0082582:19_FBgn0082582:21;Name=tmod-in;Parent=FBtr0113483;parent_type=mRNA" - - - -	16779	26,400,670 – 26,400,813	-	6	153	72.66	-1.00	0.60	0.714607
12201	dm3.chr3R	26,416,836 – 26,416,919	- - - - - - - -	16780	26,416,836 – 26,416,919	+	4	95	64.58	-2.27	0.47	0.982375
12202	dm3.chr3R	26,448,459 – 26,448,550	- - - - - - - -	16781	26,448,459 – 26,448,550	-	9	101	71.21	-0.90	0.56	0.603352
12203	dm3.chr3R	26,453,119 – 26,453,238	- - - - - - - -	16782	26,453,119 – 26,453,238	-	6	120	78.19	-1.33	0.64	0.606775
12204	dm3.chr3R	26,466,952 – 26,467,047	- - - - - - - -	16783	26,466,952 – 26,467,047	+	12	120	86.15	-1.32	0.86	0.734870
12204	dm3.chr3R	26,466,952 – 26,467,047	- - - - - - - -	16784	26,466,952 – 26,467,047	-	12	120	86.15	-0.93	0.95	0.747465
12205	dm3.chr3R	26,478,361 – 26,478,464	- - - - - - - -	16785	26,478,361 – 26,478,464	+	9	106	81.74	-2.48	0.61	0.979932
12206	dm3.chr3R	26,479,470 – 26,479,565	- - - - - - - -	16786	26,479,470 – 26,479,565	+	5	95	76.96	-1.07	0.69	0.522676
12207	dm3.chr3R	26,484,491 – 26,484,589	- - - - - - - -	16787	26,484,491 – 26,484,589	+	12	106	69.16	-1.06	0.66	0.987121
12208	dm3.chr3R	26,485,800 – 26,485,890	- - - - - - - -	16788	26,485,800 – 26,485,890	-	6	95	70.16	-1.04	0.62	0.882182
12209	dm3.chr3R	26,494,962 – 26,495,057	- - - - - - - -	16789	26,494,962 – 26,495,057	-	12	116	70.65	-1.03	0.52	0.730940
12210	dm3.chr3R	26,496,655 – 26,496,759	- - - - - - - -	16790	26,496,655 – 26,496,759	-	5	111	61.01	-1.46	0.35	0.763430
12211	dm3.chr3R	26,501,835 – 26,501,928	- - - - - - - -	16791	26,501,835 – 26,501,928	+	10	105	66.70	-1.70	0.48	0.987485
12211	dm3.chr3R	26,501,835 – 26,501,928	- - - - - - - -	16792	26,501,835 – 26,501,928	-	10	105	66.70	-2.52	0.49	0.999221
12212	dm3.chr3R	26,518,945 – 26,519,046	- - - - - - - -	16793	26,518,945 – 26,519,046	+	6	104	77.29	-1.48	0.83	0.956986
12212	dm3.chr3R	26,518,945 – 26,519,046	- - - - - - - -	16794	26,518,945 – 26,519,046	-	6	104	77.29	-1.17	0.77	0.841602
12213	dm3.chr3R	26,527,169 – 26,527,269	- - - - - - - -	16795	26,527,169 – 26,527,269	-	11	112	70.11	-0.92	0.51	0.610723
12214	dm3.chr3R	26,535,440 – 26,535,537	- - - - - - - -	16796	26,535,440 – 26,535,537	+	12	114	71.95	-1.63	0.38	0.521325
12215	dm3.chr3R	26,538,531 – 26,538,608	- - - - - - - -	16797	26,538,531 – 26,538,608	-	3	92	76.64	-1.05	0.80	0.525102
12216	dm3.chr3R	26,547,893 – 26,547,986	- - - - - - - -	16798	26,547,893 – 26,547,986	+	3	93	75.88	-2.74	0.63	0.973752
12216	dm3.chr3R	26,547,893 – 26,547,986	- - - - - - - -	16799	26,547,893 – 26,547,986	-	3	93	75.88	-0.68	0.98	0.740055
12217	dm3.chr3R	26,550,582 – 26,550,679	- - - - - - - -	16800	26,550,582 – 26,550,679	-	12	119	72.92	-1.09	0.53	0.596073
12218	dm3.chr3R	26,559,549 – 26,559,644	- - - intron="intron;ID=intron_FBgn0039798:4_FBgn0039798:3;Name=CG11313-in;Parent=FBtr0300700;parent_type=mRNA" - - - -	16801	26,559,549 – 26,559,644	+	5	103	90.94	-1.43	1.03	0.965749
12218	dm3.chr3R	26,559,549 – 26,559,644		16802	26,559,549 – 26,559,644	-	5	103	90.94	-1.75	0.79	0.528829
12219	dm3.chr3R	26,561,742 – 26,561,834	- - - intron="intron;ID=intron_FBgn0039798:4_FBgn0039798:3;Name=CG11313-in;Parent=FBtr0300700;parent_type=mRNA" - - - -	16803	26,561,742 – 26,561,834	+	11	103	87.25	-2.61	0.60	0.869821
12219	dm3.chr3R	26,561,742 – 26,561,834		16804	26,561,742 – 26,561,834	-	11	103	87.25	-2.17	0.70	0.841384
12220	dm3.chr3R	26,565,693 – 26,565,794	- - - intron="intron;ID=intron_FBgn0039798:4_FBgn0039798:3;Name=CG11313-in;Parent=FBtr0300700;parent_type=mRNA" - - - -	16805	26,565,693 – 26,565,794	-	6	118	78.12	-1.52	0.76	0.888642
12221	dm3.chr3R	26,572,446 – 26,572,539	FBnoncoding="ncRNA;ID=FBtr0306291;Name=CR43238-RA;Parent=FBgn0262883;Dbxref=FlyBase_Annotation_IDs:CR43238-RA;score_text=Weakly" - - - - - - -	16806	26,572,446 – 26,572,539	-	7	109	71.28	-1.87	0.51	0.958689
12222	dm3.chr3R	26,578,592 – 26,578,726	- - - - - - - -	16807	26,578,592 – 26,578,691	+	12	120	85.92	-1.51	0.80	0.799010
				16808	26,578,592 – 26,578,691	-	12	120	85.92	-1.62	0.68	0.537199
				16809	26,578,611 – 26,578,726	-	12	120	91.66	-1.77	0.83	0.766255
12223	dm3.chr3R	26,580,030 – 26,580,144	- - - - - - - -	16810	26,580,030 – 26,580,144	+	11	128	78.15	-2.21	0.46	0.870439
12224	dm3.chr3R	26,584,011 – 26,584,181	- - - - - - - -	16811	26,584,011 – 26,584,105	+	6	99	76.09	-2.20	0.47	0.895800
				16812	26,584,011 – 26,584,105	-	6	99	76.09	-2.02	0.47	0.812826
				16813	26,584,048 – 26,584,144	+	5	97	82.66	-1.99	0.71	0.890341
				16814	26,584,066 – 26,584,181	+	7	117	62.12	-1.76	0.36	0.932678
				16815	26,584,066 – 26,584,181	-	7	117	62.12	-1.75	0.38	0.952622
12225	dm3.chr3R	26,592,646 – 26,592,774	- - - intron="intron;ID=intron_FBgn0004606:1_FBgn0004606:2;Name=zfh1-in;Parent=FBtr0085701;parent_type=mRNA" - - - -	16816	26,592,646 – 26,592,774	-	6	133	67.63	-0.88	0.51	0.698298
12226	dm3.chr3R	26,605,475 – 26,605,571	- - - intron="intron;ID=intron_FBgn0004606:3_FBgn0004606:5;Name=zfh1-in;Parent=FBtr0085701;parent_type=mRNA" - - - -	16817	26,605,475 – 26,605,568	+	10	111	77.42	-1.72	0.55	0.812361
12226	dm3.chr3R	26,605,475 – 26,605,571		16818	26,605,476 – 26,605,571	+	10	111	78.69	-1.69	0.51	0.588605
12227	dm3.chr3R	26,606,511 – 26,606,664	- - - intron="intron;ID=intron_FBgn0004606:3_FBgn0004606:5;Name=zfh1-in;Parent=FBtr0085701;parent_type=mRNA" - - - -	16819	26,606,511 – 26,606,664	+	3	163	82.47	-2.44	0.53	0.521480
12228	dm3.chr3R	26,631,615 – 26,631,710	- - - intron="intron;ID=intron_CG12072:1_CG12072:2;Name=wts-in;Parent=FBtr0085720;parent_type=mRNA" - - - -	16820	26,631,615 – 26,631,710	-	6	97	68.81	-1.69	0.46	0.947074
12229	dm3.chr3R	26,638,804 – 26,638,925	- - - intron="intron;ID=intron_CG31012:1_CG31012:2;Name=cindr-in;Parent=FBtr0085704;parent_type=mRNA" - - - -	16821	26,638,804 – 26,638,903	+	7	105	68.04	-1.53	0.39	0.662929
12229	dm3.chr3R	26,638,804 – 26,638,925		16822	26,638,822 – 26,638,925	+	7	109	70.64	-1.95	0.46	0.941941
12230	dm3.chr3R	26,657,144 – 26,657,237	- - - intron="intron;ID=intron_FBgn0039804:1_FBgn0039804:2;Name=CG15544-in;Parent=FBtr0085708;parent_type=mRNA" - - - -	16823	26,657,144 – 26,657,237	+	12	120	76.24	-2.93	0.39	0.968137
12231	dm3.chr3R	26,661,012 – 26,661,065	- - - intron="intron;ID=intron_FBgn0039804:2_FBgn0039804:3;Name=CG15544-in;Parent=FBtr0085708;parent_type=mRNA" - - - -	16824	26,661,012 – 26,661,065	+	6	53	83.90	-1.41	0.80	0.755484
12232	dm3.chr3R	26,661,473 – 26,661,564	- - - intron="intron;ID=intron_FBgn0039804:2_FBgn0039804:3;Name=CG15544-in;Parent=FBtr0085708;parent_type=mRNA" - - - -	16825	26,661,473 – 26,661,564	+	6	99	88.33	-2.68	0.83	0.986555
12233	dm3.chr3R	26,663,100 – 26,663,205	- - - intron="intron;ID=intron_FBgn0039804:2_FBgn0039804:3;Name=CG15544-in;Parent=FBtr0085708;parent_type=mRNA" - - - -	16826	26,663,100 – 26,663,205	+	8	118	68.79	-1.27	0.43	0.555927
12234	dm3.chr3R	26,666,400 – 26,666,468	- - CDS="CDS;ID=CDS_FBgn0039804:4_179;Name=CG15544-cds;Parent=FBtr0085708;parent_type=mRNA" - - - - -	16827	26,666,400 – 26,666,468	-	13	68	90.59	-2.06	0.77	0.848458
12235	dm3.chr3R	26,668,508 – 26,668,615	- - - - - - - -	16828	26,668,508 – 26,668,615	+	6	114	80.25	-1.31	0.79	0.811163
12235	dm3.chr3R	26,668,508 – 26,668,615	- - - - - - - -	16829	26,668,508 – 26,668,615	-	6	114	80.25	-1.35	0.79	0.831421
12236	dm3.chr3R	26,686,367 – 26,686,494	- - - - - - - -	16830	26,686,367 – 26,686,494	+	9	129	69.83	-0.84	0.49	0.679331
12237	dm3.chr3R	26,714,579 – 26,714,678	- - CDS="CDS;ID=CDS_CG12070:1_76;Name=Sap-r-cds;Parent=FBtr0085713;parent_type=mRNA" - - - - -	16831	26,714,579 – 26,714,678	+	8	105	66.90	-1.40	0.62	0.988104
12237	dm3.chr3R	26,714,579 – 26,714,678		16832	26,714,579 – 26,714,678	-	8	105	66.90	-0.90	0.50	0.720906
12238	dm3.chr3R	26,715,086 – 26,715,178	- - - - - - - -	16833	26,715,086 – 26,715,178	+	4	98	70.10	-1.13	0.58	0.638815
12239	dm3.chr3R	26,716,024 – 26,716,157	- - - - - - - -	16834	26,716,024 – 26,716,157	-	5	137	90.47	-1.84	0.80	0.676876
12240	dm3.chr3R	26,716,488 – 26,716,541	- - - - - - - -	16835	26,716,488 – 26,716,541	-	6	61	87.78	-2.08	0.79	0.885220
12241	dm3.chr3R	26,722,693 – 26,722,782	- - - intron="intron;ID=intron_FBgn0015032:1_FBgn0015032:2;Name=Cyp4c3-in;Parent=FBtr0085712;parent_type=mRNA" - - - -	16836	26,722,693 – 26,722,782	+	7	102	57.03	-0.75	0.57	0.979564
12241	dm3.chr3R	26,722,693 – 26,722,782		16837	26,722,693 – 26,722,782	-	7	102	57.03	-0.61	0.40	0.553858
12242	dm3.chr3R	26,724,738 – 26,724,797	- - - intron="intron;ID=intron_FBgn0015032:5_FBgn0015032:6;Name=Cyp4c3-in;Parent=FBtr0085712;parent_type=mRNA" - - - -	16838	26,724,738 – 26,724,797	+	10	60	81.04	-2.21	0.69	0.983883
12243	dm3.chr3R	26,725,271 – 26,725,403	- - CDS="CDS;ID=CDS_FBgn0015032:6_224;Name=Cyp4c3-cds;Parent=FBtr0085712;parent_type=mRNA" - - - - -	16839	26,725,271 – 26,725,403	+	6	132	82.47	-2.82	0.68	0.992165
12243	dm3.chr3R	26,725,271 – 26,725,403		16840	26,725,271 – 26,725,403	-	6	132	82.47	-1.75	0.75	0.899458
12244	dm3.chr3R	26,729,483 – 26,729,578	- - - - - - - -	16841	26,729,483 – 26,729,578	+	7	109	67.32	-0.99	0.44	0.500000
12245	dm3.chr3R	26,730,162 – 26,730,258	- - - - - - - -	16842	26,730,162 – 26,730,258	-	12	98	79.06	-1.58	0.69	0.956087
12246	dm3.chr3R	26,740,474 – 26,740,566	- - - intron="intron;ID=intron_FBgn0020912:1_FBgn0020912:3;Name=Ptx1-in;Parent=FBtr0089389,FBtr0089391;parent_type=mRNA" - - - -	16843	26,740,474 – 26,740,566	+	12	118	78.25	-2.14	0.55	0.927628
12246	dm3.chr3R	26,740,474 – 26,740,566		16844	26,740,474 – 26,740,566	-	12	118	78.25	-1.95	0.64	0.950889
12247	dm3.chr3R	26,750,455 – 26,750,552	- - - intron="intron;ID=intron_FBgn0020912:7_FBgn0020912:9;Name=Ptx1-in;Parent=FBtr0089391,FBtr0089390;parent_type=mRNA" - - - -	16845	26,750,455 – 26,750,552	-	6	106	84.07	-1.88	0.71	0.801006
12248	dm3.chr3R	26,758,769 – 26,758,859	- - - - - - - -	16846	26,758,769 – 26,758,859	+	12	114	79.86	-1.43	0.77	0.866620
12249	dm3.chr3R	26,760,619 – 26,760,709	- - - - - - - -	16847	26,760,619 – 26,760,709	-	11	113	89.29	-1.86	0.91	0.952270
12250	dm3.chr3R	26,773,063 – 26,773,201	- - - - - - - -	16848	26,773,063 – 26,773,201	+	5	139	82.32	-1.85	0.73	0.876246
12251	dm3.chr3R	26,785,105 – 26,785,240	- - - - - - - -	16849	26,785,105 – 26,785,240	-	8	152	63.36	-1.29	0.33	0.664629
12252	dm3.chr3R	26,787,049 – 26,787,202	- - CDS="CDS;ID=CDS_CG15548:1_51;Name=CG15548-cds;Parent=FBtr0085731;parent_type=mRNA" - - - - -	16850	26,787,049 – 26,787,202	+	10	168	51.97	-2.72	0.01	0.800579
12252	dm3.chr3R	26,787,049 – 26,787,202		16851	26,787,049 – 26,787,202	-	10	168	51.97	-2.83	-0.00	0.833677
12253	dm3.chr3R	26,812,375 – 26,812,467	- - - intron="intron;ID=intron_CG12073:1_CG12073:2;Name=5-HT7-in;Parent=FBtr0085746;parent_type=mRNA" - - - -	16852	26,812,375 – 26,812,467	-	5	95	93.35	-2.04	0.77	0.565323
12254	dm3.chr3R	26,812,875 – 26,812,974	- - - intron="intron;ID=intron_CG12073:1_CG12073:2;Name=5-HT7-in;Parent=FBtr0085746;parent_type=mRNA" - - - -	16853	26,812,875 – 26,812,974	+	6	99	83.70	-1.53	0.67	0.507347
12254	dm3.chr3R	26,812,875 – 26,812,974		16854	26,812,875 – 26,812,974	-	6	99	83.70	-2.02	0.69	0.892657
12255	dm3.chr3R	26,813,583 – 26,813,673	- - - intron="intron;ID=intron_CG12073:1_CG12073:2;Name=5-HT7-in;Parent=FBtr0085746;parent_type=mRNA" - - - -	16855	26,813,583 – 26,813,673	+	3	90	97.04	-2.32	0.94	0.965245
12256	dm3.chr3R	26,818,896 – 26,818,998	- - - intron="intron;ID=intron_CG12073:1_CG12073:2;Name=5-HT7-in;Parent=FBtr0085746;parent_type=mRNA" - - - -	16856	26,818,896 – 26,818,998	-	6	118	78.08	-2.27	0.50	0.849325
12257	dm3.chr3R	26,833,165 – 26,833,259	- - - intron="intron;ID=intron_CG12073:1_CG12073:2;Name=5-HT7-in;Parent=FBtr0085746;parent_type=mRNA" - - - -	16857	26,833,165 – 26,833,259	+	4	97	86.24	-2.28	0.78	0.928000
12258	dm3.chr3R	26,850,495 – 26,850,603	- - - - - - - -	16858	26,850,495 – 26,850,603	+	4	108	78.05	-2.23	0.44	0.500000
12259	dm3.chr3R	26,874,241 – 26,874,345	- - - - - - - -	16859	26,874,241 – 26,874,345	+	5	106	69.78	-1.81	0.40	0.623847
12260	dm3.chr3R	26,877,591 – 26,877,704	- - - intron="intron;ID=intron_CG1462:3_CG1462:4;Name=Aph-4-in;Parent=FBtr0085733,FBtr0085734;parent_type=mRNA" - - - -	16860	26,877,591 – 26,877,704	-	5	119	86.77	-2.06	0.77	0.867444
12261	dm3.chr3R	26,885,094 – 26,885,219	- - - intron="intron;ID=intron_CG2048:6_CG2048:2;Name=dco-in;Parent=FBtr0085744;parent_type=mRNA" - - - -	16861	26,885,094 – 26,885,219	-	7	134	78.69	-2.95	0.75	0.998498
12262	dm3.chr3R	26,895,030 – 26,895,146	- - - intron="intron;ID=intron_CG15552:1_CG15552:2;Name=Sox100B-in;Parent=FBtr0085735;parent_type=mRNA" - - - -	16862	26,895,030 – 26,895,146	+	6	119	76.64	-1.20	0.59	0.582809
12263	dm3.chr3R	26,939,764 – 26,939,847	- - - - - - - -	16863	26,939,764 – 26,939,847	-	9	87	65.46	-0.46	0.47	0.548565
12264	dm3.chr3R	26,945,708 – 26,945,800	- - - - - - - -	16864	26,945,708 – 26,945,800	-	10	113	59.19	-1.87	0.22	0.703018
12265	dm3.chr3R	26,955,892 – 26,955,973	- - CDS="CDS;ID=CDS_CG15556:1_51;Name=CG15556-cds;Parent=FBtr0085737;parent_type=mRNA" - - - - -	16865	26,955,892 – 26,955,973	+	9	82	68.63	-1.57	0.34	0.580294
12266	dm3.chr3R	26,961,140 – 26,961,237	- - - intron="intron;ID=intron_FBgn0013973:1_FBgn0013973:2;Name=Gycbeta100B-in;Parent=FBtr0085753;parent_type=mRNA" - - - -	16866	26,961,140 – 26,961,237	+	10	119	64.76	-1.25	0.41	0.786523
12267	dm3.chr3R	26,967,547 – 26,967,662	- - - intron="intron;ID=intron_FBgn0013973:3_FBgn0013973:4;Name=Gycbeta100B-in;Parent=FBtr0085753;parent_type=mRNA" - - - -	16867	26,967,547 – 26,967,638	+	7	94	78.92	-0.82	0.85	0.760623
12267	dm3.chr3R	26,967,547 – 26,967,662		16868	26,967,568 – 26,967,662	+	11	110	74.61	-2.09	0.55	0.964909
12268	dm3.chr3R	26,972,328 – 26,972,431	- - - intron="intron;ID=intron_FBgn0013973:3_FBgn0013973:4;Name=Gycbeta100B-in;Parent=FBtr0085753;parent_type=mRNA" - - - -	16869	26,972,328 – 26,972,431	-	12	120	87.33	-1.92	0.64	0.513380
12269	dm3.chr3R	26,984,207 – 26,984,317	- - CDS="CDS;ID=CDS_FBgn0086704:1_179;Name=stops-cds;Parent=FBtr0085781,FBtr0085782,FBtr0301346;parent_type=mRNA" intron="intron;ID=intron_FBgn0013973:16_FBgn0013973:17;Name=Gycbeta100B-in;Parent=FBtr0085753;parent_type=mRNA" - - - -	16870	26,984,207 – 26,984,317	+	11	118	74.75	-2.09	0.43	0.911071
12269	dm3.chr3R	26,984,207 – 26,984,317		16871	26,984,207 – 26,984,317	-	11	118	74.75	-1.56	0.56	0.923218
12270	dm3.chr3R	26,987,244 – 26,987,335	- - - intron="intron;ID=intron_FBgn0086704:4_FBgn0086704:3;Name=stops-in;Parent=FBtr0085781,FBtr0085782,FBtr0301346;parent_type=mRNA" - - - -	16872	26,987,244 – 26,987,335	-	7	95	74.88	-1.56	0.48	0.626264
12270	dm3.chr3R	26,987,244 – 26,987,335		16873	26,987,245 – 26,987,335	-	7	94	74.61	-1.49	0.48	0.585326
12271	dm3.chr3R	26,988,210 – 26,988,327	- - - intron="intron;ID=intron_FBgn0086704:4_FBgn0086704:3;Name=stops-in;Parent=FBtr0085781,FBtr0085782,FBtr0301346;parent_type=mRNA" - - - -	16874	26,988,210 – 26,988,327	+	7	120	65.07	-1.47	0.34	0.585771
12272	dm3.chr3R	27,012,061 – 27,012,157	- - - intron="intron;ID=intron_FBgn0051004:15_FBgn0051004:14;Name=CG31004-in;Parent=FBtr0085779,FBtr0085780,FBtr0300960,FBtr0300961;parent_type=mRNA" - - - -	16875	27,012,061 – 27,012,157	+	11	108	73.04	-2.02	0.33	0.665242
12273	dm3.chr3R	27,013,787 – 27,013,877	- - - intron="intron;ID=intron_FBgn0051004:15_FBgn0051004:14;Name=CG31004-in;Parent=FBtr0085779,FBtr0085780,FBtr0300960,FBtr0300961;parent_type=mRNA" - - - -	16876	27,013,787 – 27,013,877	+	10	106	67.83	-1.83	0.56	0.995359
12273	dm3.chr3R	27,013,787 – 27,013,877		16877	27,013,787 – 27,013,877	-	10	106	67.83	-1.21	0.55	0.955355
12274	dm3.chr3R	27,019,658 – 27,019,764	- - CDS="CDS;ID=CDS_CG1480:1_82;Name=bnk-cds;Parent=FBtr0085754;parent_type=mRNA" intron="intron;ID=intron_FBgn0051004:18_FBgn0051004:16;Name=CG31004-in;Parent=FBtr0085779,FBtr0300960,FBtr0300961;parent_type=mRNA" - - - -	16878	27,019,658 – 27,019,764	-	6	106	82.96	-2.13	0.78	0.973675
12275	dm3.chr3R	27,025,163 – 27,025,257	- - CDS="CDS;ID=CDS_FBgn0039827:5_77;Name=CG1544-cds;Parent=FBtr0085755;parent_type=mRNA" - - - - -	16879	27,025,163 – 27,025,257	-	12	99	72.40	-1.02	0.50	0.719085
12276	dm3.chr3R	27,041,959 – 27,042,069	- - - - - - - -	16880	27,041,959 – 27,042,069	+	12	118	66.69	-2.03	0.31	0.923056
12277	dm3.chr3R	27,043,283 – 27,043,383	FBnoncoding="ncRNA;ID=FBtr0085775;Name=RNaseP:RNA-RA;Parent=FBgn0046696;Dbxref=FlyBase_Annotation_IDs:CR32868-RA,REFSEQ:NR_002092;score_text=Weakly" - - intron="intron;ID=intron_FBgn0039830:3_FBgn0039830:2;Name=CG1746-in;Parent=FBtr0306237;parent_type=mRNA" "Rfam_10.0=RF00009;RNaseP_nuc;AAKO01001336.1/331254-331549\|3.5e-50" "Noncode_2.0=n1871_u376_AF434763_RNase\|8.8e-51" "unique_Noncode_2.0=u376_RNase\|7.7e-51" -	16881	27,043,283 – 27,043,383	+	14	116	72.82	-0.46	0.67	0.702824
12277	dm3.chr3R	27,043,283 – 27,043,383		16882	27,043,283 – 27,043,383	-	14	116	72.82	-1.05	0.70	0.960557
12278	dm3.chr3R	27,044,630 – 27,044,734	- - CDS="CDS;ID=CDS_FBgn0039830:5_247;Name=CG1746-cds;Parent=FBtr0085772;parent_type=mRNA" - - - - -	16883	27,044,630 – 27,044,734	+	13	115	66.29	-1.72	0.34	0.942251
12279	dm3.chr3R	27,049,020 – 27,049,077	- - - intron="intron;ID=intron_FBgn0039831:2_FBgn0039831:5;Name=CG12054-in;Parent=FBtr0085758;parent_type=mRNA" - - - -	16884	27,049,020 – 27,049,077	+	5	59	93.32	-2.49	0.90	0.977794
12279	dm3.chr3R	27,049,020 – 27,049,077		16885	27,049,020 – 27,049,077	-	5	59	93.32	-2.26	0.82	0.870253
12280	dm3.chr3R	27,059,671 – 27,059,803	- - - - - - - -	16886	27,059,671 – 27,059,778	+	12	114	75.47	-1.56	0.52	0.888442
12280	dm3.chr3R	27,059,671 – 27,059,803	- - - - - - - -	16887	27,059,708 – 27,059,803	+	11	108	61.54	-0.89	0.44	0.914824
12281	dm3.chr3R	27,072,062 – 27,072,164	- - - intron="intron;ID=intron_CG31005:1_CG31005:2;Name=qless-in;Parent=FBtr0085769;parent_type=mRNA" - - - -	16888	27,072,062 – 27,072,164	+	9	105	69.62	-2.10	0.48	0.992024
12281	dm3.chr3R	27,072,062 – 27,072,164		16889	27,072,062 – 27,072,164	-	9	105	69.62	-1.01	0.44	0.500000
12282	dm3.chr3R	27,073,409 – 27,073,506	- - - intron="intron;ID=intron_CG31005:1_CG31005:2;Name=qless-in;Parent=FBtr0085769;parent_type=mRNA" - - - -	16890	27,073,409 – 27,073,506	+	5	113	80.90	-3.37	0.67	0.997828
12283	dm3.chr3R	27,075,291 – 27,075,384	- - - intron="intron;ID=intron_CG31005:1_CG31005:2;Name=qless-in;Parent=FBtr0085769;parent_type=mRNA" - - - -	16891	27,075,291 – 27,075,384	+	6	97	80.99	-2.26	0.58	0.905014
12284	dm3.chr3R	27,078,035 – 27,078,125	- - - - - - - -	16892	27,078,035 – 27,078,125	-	7	105	59.61	-0.85	0.50	0.931211
12285	dm3.chr3R	27,128,851 – 27,128,903	- - CDS="CDS;ID=CDS_CG11340:2_73;Name=CG11340-cds;Parent=FBtr0085766;parent_type=mRNA" - - - - -	16893	27,128,851 – 27,128,903	+	3	52	98.72	-1.86	1.00	0.958249
12286	dm3.chr3R	27,128,989 – 27,129,101	- - CDS="CDS;ID=CDS_CG11340:2_73;Name=CG11340-cds;Parent=FBtr0085766;parent_type=mRNA" - - - - -	16894	27,128,989 – 27,129,101	-	15	120	77.14	-1.46	0.51	0.722421
12287	dm3.chr3R	27,140,450 – 27,140,502	- - - intron="intron;ID=intron_FBgn0085376:1_FBgn0085376:2;Name=CG34347-in;Parent=FBtr0290046,FBtr0301051;parent_type=mRNA" - - - -	16895	27,140,450 – 27,140,502	+	4	55	75.70	-1.58	0.60	0.619466
12288	dm3.chr3R	27,145,570 – 27,145,620	- - - intron="intron;ID=intron_FBgn0085376:1_FBgn0085376:2;Name=CG34347-in;Parent=FBtr0290046,FBtr0301051;parent_type=mRNA" - - - -	16896	27,145,570 – 27,145,620	+	6	57	85.73	-1.42	0.83	0.713786
12289	dm3.chr3R	27,149,833 – 27,149,978	- - - intron="intron;ID=intron_FBgn0085376:1_FBgn0085376:2;Name=CG34347-in;Parent=FBtr0290046,FBtr0301051;parent_type=mRNA" - - - -	16897	27,149,833 – 27,149,978	+	6	153	58.55	-2.07	0.20	0.691246
12290	dm3.chr3R	27,153,460 – 27,153,529	- - - intron="intron;ID=intron_FBgn0085376:1_FBgn0085376:2;Name=CG34347-in;Parent=FBtr0290046,FBtr0301051;parent_type=mRNA" - - - -	16898	27,153,460 – 27,153,529	-	5	82	84.52	-1.38	0.82	0.729661
12291	dm3.chr3R	27,164,236 – 27,164,292	- - - intron="intron;ID=intron_FBgn0085376:1_FBgn0085376:2;Name=CG34347-in;Parent=FBtr0290046,FBtr0301051;parent_type=mRNA" - - - -	16899	27,164,236 – 27,164,292	+	5	56	89.46	-1.60	0.86	0.777688
12292	dm3.chr3R	27,175,970 – 27,176,060	- - - intron="intron;ID=intron_FBgn0085376:2_FBgn0085376:3;Name=CG34347-in;Parent=FBtr0290046,FBtr0301051;parent_type=mRNA" - - - -	16900	27,175,970 – 27,176,060	-	7	106	72.86	-1.86	0.43	0.760184
12293	dm3.chr3R	27,179,826 – 27,179,919	- - - intron="intron;ID=intron_FBgn0085376:6_FBgn0085376:7;Name=CG34347-in;Parent=FBtr0290046,FBtr0301051;parent_type=mRNA" - - - -	16901	27,179,826 – 27,179,919	+	9	99	74.12	-1.60	0.73	0.991434
12294	dm3.chr3R	27,182,204 – 27,182,311	- - - intron="intron;ID=intron_FBgn0085376:9_FBgn0085376:10;Name=CG34347-in;Parent=FBtr0290046;parent_type=mRNA" - - - -	16902	27,182,204 – 27,182,311	-	6	108	79.87	-1.90	0.53	0.603606
12295	dm3.chr3R	27,184,347 – 27,184,469	- - - intron="intron;ID=intron_FBgn0085376:10_FBgn0085376:11;Name=CG34347-in;Parent=FBtr0290046;parent_type=mRNA" - - - -	16903	27,184,347 – 27,184,447	+	11	113	78.42	-1.33	0.68	0.818437
12295	dm3.chr3R	27,184,347 – 27,184,469		16904	27,184,373 – 27,184,469	+	11	108	84.25	-1.77	0.82	0.943082
12296	dm3.chr3R	27,186,543 – 27,186,674	- - - - - - - -	16905	27,186,543 – 27,186,634	+	13	118	62.77	-0.55	0.59	0.934040
12296	dm3.chr3R	27,186,543 – 27,186,674	- - - - - - - -	16906	27,186,565 – 27,186,674	+	13	121	75.54	-0.83	0.58	0.573082
12297	dm3.chr3R	27,189,161 – 27,189,275	- - - intron="intron;ID=intron_FBgn0085376:16_FBgn0085376:17;Name=CG34347-in;Parent=FBtr0290046;parent_type=mRNA" - - - -	16907	27,189,161 – 27,189,275	+	10	118	84.93	-2.13	0.55	0.636995
12297	dm3.chr3R	27,189,161 – 27,189,275		16908	27,189,161 – 27,189,275	-	10	118	84.93	-1.94	0.60	0.638799
12298	dm3.chr3R	27,190,389 – 27,190,490	- - - intron="intron;ID=intron_FBgn0085376:16_FBgn0085376:17;Name=CG34347-in;Parent=FBtr0290046;parent_type=mRNA" - - - -	16909	27,190,389 – 27,190,490	+	8	110	76.13	-2.27	0.51	0.957056
12299	dm3.chr3R	27,200,096 – 27,200,159	- - - - - - - -	16910	27,200,096 – 27,200,159	+	7	63	66.24	-1.22	0.45	0.905907
12300	dm3.chr3R	27,216,556 – 27,216,647	- - - - - - - -	16911	27,216,556 – 27,216,647	-	4	105	84.20	-2.13	0.81	0.947005
12301	dm3.chr3R	27,229,685 – 27,229,805	- - CDS="CDS;ID=CDS_FBgn0039846:4_98;Name=CG11337-cds;Parent=FBtr0085812;parent_type=mRNA" - - - - -	16912	27,229,685 – 27,229,805	-	15	123	74.58	-1.17	0.44	0.500000
12302	dm3.chr3R	27,235,179 – 27,235,288	- - - intron="intron;ID=intron_CG17998:1_CG17998:2;Name=Gprk2-in;Parent=FBtr0085788;parent_type=mRNA" - - - -	16913	27,235,179 – 27,235,288	-	7	112	67.40	-1.23	0.41	0.764758
12303	dm3.chr3R	27,236,196 – 27,236,263	- - - intron="intron;ID=intron_CG17998:2_CG17998:3;Name=Gprk2-in;Parent=FBtr0085788;parent_type=mRNA" - - - -	16914	27,236,196 – 27,236,263	-	7	68	66.81	-1.76	0.40	0.961562
12304	dm3.chr3R	27,238,742 – 27,238,832	- - - intron="intron;ID=intron_CG17998:2_CG17998:3;Name=Gprk2-in;Parent=FBtr0085788;parent_type=mRNA" - - - -	16915	27,238,742 – 27,238,832	+	8	112	59.72	-1.52	0.29	0.589052
12305	dm3.chr3R	27,244,911 – 27,245,008	- - - intron="intron;ID=intron_CG17998:2_CG17998:3;Name=Gprk2-in;Parent=FBtr0085788;parent_type=mRNA" - - - -	16916	27,244,911 – 27,245,008	+	7	107	59.05	-1.31	0.33	0.791627
12306	dm3.chr3R	27,245,379 – 27,245,479	- - - intron="intron;ID=intron_CG17998:2_CG17998:3;Name=Gprk2-in;Parent=FBtr0085788;parent_type=mRNA" - - - -	16917	27,245,379 – 27,245,479	-	10	111	77.11	-2.07	0.47	0.783446
12307	dm3.chr3R	27,269,721 – 27,269,787	- - - intron="intron;ID=intron_CG17998:3_CG17998:4;Name=Gprk2-in;Parent=FBtr0085788;parent_type=mRNA" - - - -	16918	27,269,721 – 27,269,787	+	3	66	75.00	-2.41	0.51	0.784490
12308	dm3.chr3R	27,272,086 – 27,272,199	- - - intron="intron;ID=intron_CG17998:3_CG17998:4;Name=Gprk2-in;Parent=FBtr0085788;parent_type=mRNA" - - - -	16919	27,272,086 – 27,272,199	+	5	116	86.67	-2.19	0.76	0.900183
12308	dm3.chr3R	27,272,086 – 27,272,199		16920	27,272,086 – 27,272,199	-	5	116	86.67	-2.55	0.77	0.968550
12309	dm3.chr3R	27,281,744 – 27,281,905	- - CDS="CDS;ID=CDS_CG17998:12_17;Name=Gprk2-cds;Parent=FBtr0085788;parent_type=mRNA" - - - - -	16921	27,281,744 – 27,281,905	+	15	174	77.77	-1.38	0.52	0.662719
12310	dm3.chr3R	27,290,838 – 27,290,932	- - - - - - - -	16922	27,290,838 – 27,290,932	+	8	106	65.76	-1.87	0.61	0.997043
12310	dm3.chr3R	27,290,838 – 27,290,932	- - - - - - - -	16923	27,290,838 – 27,290,932	-	8	106	65.76	-1.12	0.51	0.876626
12311	dm3.chr3R	27,295,883 – 27,295,981	- - - - - - - -	16924	27,295,883 – 27,295,981	+	8	105	76.23	-1.57	0.58	0.732616
12312	dm3.chr3R	27,299,708 – 27,299,813	- - - - - - - -	16925	27,299,708 – 27,299,813	-	5	115	54.68	-0.54	0.53	0.837734
12313	dm3.chr3R	27,300,914 – 27,301,011	- - - - - - - -	16926	27,300,914 – 27,301,011	+	12	120	81.10	-2.33	0.64	0.974287
12314	dm3.chr3R	27,307,339 – 27,307,436	- - - - - - - -	16927	27,307,339 – 27,307,436	+	6	103	89.97	-1.73	0.86	0.829383
12314	dm3.chr3R	27,307,339 – 27,307,436	- - - - - - - -	16928	27,307,339 – 27,307,436	-	6	103	89.97	-1.86	0.77	0.633675
12315	dm3.chr3R	27,317,119 – 27,317,219	- - - - - - - -	16929	27,317,119 – 27,317,219	+	6	108	90.19	-2.45	0.82	0.959378
12315	dm3.chr3R	27,317,119 – 27,317,219	- - - - - - - -	16930	27,317,119 – 27,317,219	-	6	108	90.19	-1.99	0.80	0.810488
12316	dm3.chr3R	27,317,389 – 27,317,481	- - - - - - - -	16931	27,317,389 – 27,317,481	+	5	107	82.94	-1.92	0.68	0.716062
12317	dm3.chr3R	27,328,149 – 27,328,242	- - CDS="CDS;ID=CDS_FBgn0039851:2_232;Name=mey-cds;Parent=FBtr0085790;parent_type=mRNA" - - - - -	16932	27,328,149 – 27,328,242	+	5	93	96.77	-1.24	0.96	0.683883
12318	dm3.chr3R	27,335,212 – 27,335,317	- - - - - - - -	16933	27,335,212 – 27,335,317	+	12	112	74.40	-2.14	0.39	0.887542
12319	dm3.chr3R	27,337,057 – 27,337,181	- - - - - - - -	16934	27,337,057 – 27,337,154	+	10	101	78.12	-1.68	0.61	0.881242
				16935	27,337,089 – 27,337,181	+	8	99	87.70	-3.14	0.76	0.992960
				16936	27,337,089 – 27,337,181	-	8	99	87.70	-2.51	0.85	0.985139
12320	dm3.chr3R	27,338,927 – 27,339,028	- - - - - - - -	16937	27,338,927 – 27,339,028	+	9	117	75.02	-1.60	0.49	0.672485
12320	dm3.chr3R	27,338,927 – 27,339,028	- - - - - - - -	16938	27,338,927 – 27,339,028	-	9	117	75.02	-1.33	0.56	0.693405
12321	dm3.chr3R	27,346,833 – 27,346,923	- - - - - - - -	16939	27,346,833 – 27,346,923	-	9	105	68.25	-1.42	0.50	0.950514
12322	dm3.chr3R	27,357,166 – 27,357,217	- - - - - - - -	16940	27,357,166 – 27,357,217	-	9	52	91.00	-1.04	0.94	0.694075
12323	dm3.chr3R	27,363,749 – 27,363,847	- - - - - - - -	16941	27,363,749 – 27,363,847	+	8	106	76.25	-2.30	0.34	0.500000
12324	dm3.chr3R	27,366,449 – 27,366,607	- - - - - - - -	16942	27,366,449 – 27,366,567	-	12	123	75.27	-2.38	0.61	0.993512
12324	dm3.chr3R	27,366,449 – 27,366,607	- - - - - - - -	16943	27,366,489 – 27,366,607	-	5	118	77.47	-1.15	0.77	0.734802
12325	dm3.chr3R	27,377,872 – 27,377,970	- - - intron="intron;ID=intron_FBgn0039852:3_FBgn0039852:4;Name=nyo-in;Parent=FBtr0300875,FBtr0300876;parent_type=mRNA" - - - -	16944	27,377,872 – 27,377,970	-	12	119	77.57	-1.52	0.53	0.500000
12326	dm3.chr3R	27,380,246 – 27,380,337	- - - intron="intron;ID=intron_FBgn0039852:3_FBgn0039852:4;Name=nyo-in;Parent=FBtr0300875,FBtr0300876;parent_type=mRNA" - - - -	16945	27,380,246 – 27,380,337	-	12	119	81.06	-2.44	0.52	0.886363
12327	dm3.chr3R	27,385,556 – 27,385,647	- - - intron="intron;ID=intron_FBgn0039852:5_FBgn0039852:6;Name=nyo-in;Parent=FBtr0300875,FBtr0300876;parent_type=mRNA" - - - -	16946	27,385,556 – 27,385,647	+	8	103	71.18	-1.72	0.64	0.987836
12328	dm3.chr3R	27,395,404 – 27,395,465	- - - - - - - -	16947	27,395,404 – 27,395,465	-	5	64	71.82	-1.01	0.57	0.527419
12329	dm3.chr3R	27,397,602 – 27,397,676	- - - - - - - -	16948	27,397,602 – 27,397,676	+	7	78	62.19	-1.97	0.59	0.999564
12329	dm3.chr3R	27,397,602 – 27,397,676	- - - - - - - -	16949	27,397,602 – 27,397,676	-	7	78	62.19	-1.88	0.41	0.993574
12330	dm3.chr3R	27,401,124 – 27,401,192	- - - - - - - -	16950	27,401,124 – 27,401,192	+	11	69	63.98	-0.42	0.49	0.765162
12331	dm3.chr3R	27,403,047 – 27,403,145	- - CDS="CDS;ID=CDS_FBgn0043900:2_177;Name=pygo-cds;Parent=FBtr0085806;parent_type=mRNA" - - - - -	16951	27,403,047 – 27,403,145	+	15	120	82.22	-2.82	0.49	0.946905
12332	dm3.chr3R	27,404,232 – 27,404,352	- - CDS="CDS;ID=CDS_FBgn0043900:2_177;Name=pygo-cds;Parent=FBtr0085806;parent_type=mRNA" - - - - -	16952	27,404,232 – 27,404,352	-	12	120	77.77	-1.85	0.44	0.757073
12333	dm3.chr3R	27,404,405 – 27,404,500	- - CDS="CDS;ID=CDS_FBgn0043900:2_177;Name=pygo-cds;Parent=FBtr0085806;parent_type=mRNA" - - - - -	16953	27,404,405 – 27,404,500	-	12	109	75.20	-2.60	0.37	0.948477
12334	dm3.chr3R	27,405,209 – 27,405,314	- - CDS="CDS;ID=CDS_FBgn0043900:2_177;Name=pygo-cds;Parent=FBtr0085806;parent_type=mRNA" - - - - -	16954	27,405,209 – 27,405,314	+	12	111	84.33	-2.24	0.65	0.935068
12335	dm3.chr3R	27,426,135 – 27,426,356	- - CDS="CDS;ID=CDS_CG11525:5_70;Name=CycG-cds;Parent=FBtr0085801;parent_type=mRNA" - - - - -	16955	27,426,135 – 27,426,251	+	13	120	88.09	-2.05	0.75	0.890556
				16956	27,426,171 – 27,426,291	+	13	120	88.46	-2.44	0.77	0.971617
				16957	27,426,171 – 27,426,291	-	13	120	88.46	-3.25	0.64	0.990093
				16958	27,426,251 – 27,426,356	-	13	117	71.53	-0.89	0.56	0.871654
12336	dm3.chr3R	27,426,521 – 27,426,636	- - CDS="CDS;ID=CDS_CG11525:4_70;Name=CycG-cds;Parent=FBtr0085801;parent_type=mRNA" - - - - -	16959	27,426,521 – 27,426,636	-	13	115	81.43	-1.73	0.54	0.743008
12337	dm3.chr3R	27,430,010 – 27,430,218	- - - intron="intron;ID=intron_CG11525:7_CG11525:9;Name=CycG-in;Parent=FBtr0085802;parent_type=mRNA" - - - -	16960	27,430,010 – 27,430,124	-	7	123	75.42	-1.73	0.80	0.985873
12337	dm3.chr3R	27,430,010 – 27,430,218		16961	27,430,124 – 27,430,218	+	5	94	66.30	-1.12	0.47	0.576245
12338	dm3.chr3R	27,432,961 – 27,433,063	- - - intron="intron;ID=intron_CG11525:7_CG11525:9;Name=CycG-in;Parent=FBtr0085802;parent_type=mRNA" - - - -	16962	27,432,961 – 27,433,063	+	6	111	64.43	-1.42	0.34	0.500000
12339	dm3.chr3R	27,437,307 – 27,437,414	- - - - - - - -	16963	27,437,307 – 27,437,414	+	12	122	74.36	-1.63	0.47	0.613916
12340	dm3.chr3R	27,443,945 – 27,444,043	- - - - - - - -	16964	27,443,945 – 27,444,043	+	7	120	70.19	-2.35	0.57	0.996539
12341	dm3.chr3R	27,444,090 – 27,444,202	- - - - - - - -	16965	27,444,090 – 27,444,202	+	12	118	82.41	-2.36	0.73	0.987139
12342	dm3.chr3R	27,448,562 – 27,448,655	- - - - - - - -	16966	27,448,562 – 27,448,655	+	11	114	67.85	-0.60	0.61	0.710695
12343	dm3.chr3R	27,452,223 – 27,452,356	- - - - - - - -	16967	27,452,223 – 27,452,356	-	8	144	81.98	-1.90	0.58	0.760211
12344	dm3.chr3R	27,452,616 – 27,452,678	- - - - - - - -	16968	27,452,616 – 27,452,678	+	5	71	55.98	-0.79	0.40	0.574152
12345	dm3.chr3R	27,463,325 – 27,463,401	- - - - - - - -	16969	27,463,325 – 27,463,401	+	7	76	59.14	-1.52	0.31	0.878945
12346	dm3.chr3R	27,491,349 – 27,491,447	- - - - - - - -	16970	27,491,349 – 27,491,447	-	5	111	88.62	-1.39	0.91	0.808525
12347	dm3.chr3R	27,497,466 – 27,497,575	- - - - - - - -	16971	27,497,466 – 27,497,575	-	8	117	55.33	-1.31	0.25	0.568089
12348	dm3.chr3R	27,498,238 – 27,498,330	- - - intron="intron;ID=intron_CG1815:3_CG1815:4;Name=CG1815-in;Parent=FBtr0085822,FBtr0085823,FBtr0085824;parent_type=mRNA" - - - -	16972	27,498,238 – 27,498,330	+	5	119	64.20	-1.60	0.38	0.548952
12349	dm3.chr3R	27,498,558 – 27,498,708	- - - intron="intron;ID=intron_CG1815:3_CG1815:4;Name=CG1815-in;Parent=FBtr0085822,FBtr0085823,FBtr0085824;parent_type=mRNA" - - - -	16973	27,498,558 – 27,498,672	+	6	118	85.72	-2.36	0.70	0.930944
12349	dm3.chr3R	27,498,558 – 27,498,708		16974	27,498,598 – 27,498,708	+	6	120	84.35	-1.68	0.69	0.571368
12350	dm3.chr3R	27,507,750 – 27,507,853	- - - - - - - -	16975	27,507,750 – 27,507,853	+	9	113	73.23	-1.61	0.43	0.713953
12351	dm3.chr3R	27,508,805 – 27,508,855	- - - - - - - -	16976	27,508,805 – 27,508,855	+	12	53	95.74	-3.23	0.54	0.662253
12351	dm3.chr3R	27,508,805 – 27,508,855	- - - - - - - -	16977	27,508,805 – 27,508,855	-	12	53	95.74	-3.14	0.65	0.867144
12352	dm3.chr3R	27,510,912 – 27,510,998	- - - - - - - -	16978	27,510,912 – 27,510,998	-	7	88	69.68	-1.77	0.51	0.986508
12353	dm3.chr3R	27,512,729 – 27,512,829	- - - - - - - -	16979	27,512,729 – 27,512,829	+	6	119	77.17	-1.90	0.55	0.759975
12354	dm3.chr3R	27,533,121 – 27,533,211	- - - - - - - -	16980	27,533,121 – 27,533,211	-	8	102	85.73	-1.88	0.75	0.815485
12355	dm3.chr3R	27,533,771 – 27,533,866	- - CDS="CDS;ID=CDS_FBgn0261583:1_221;Name=CG42693-cds;Parent=FBtr0302894;parent_type=mRNA" - - - - -	16981	27,533,771 – 27,533,866	+	5	117	61.33	-1.66	0.59	0.995160
12355	dm3.chr3R	27,533,771 – 27,533,866		16982	27,533,771 – 27,533,866	-	5	117	61.33	-2.89	0.52	0.999707
12356	dm3.chr3R	27,535,811 – 27,535,904	- - - - - - - -	16983	27,535,811 – 27,535,904	+	8	103	75.34	-1.05	0.62	0.697950
12357	dm3.chr3R	27,537,742 – 27,537,845	- - - - - - - -	16984	27,537,742 – 27,537,845	-	6	107	75.21	-1.24	0.54	0.505099
12358	dm3.chr3R	27,537,880 – 27,537,987	- - - - - - - -	16985	27,537,880 – 27,537,987	-	5	114	69.63	-1.95	0.35	0.559025
12359	dm3.chr3R	27,556,332 – 27,556,425	- - CDS="CDS;ID=CDS_FBgn0003870:8_227;Name=ttk-cds;Parent=FBtr0085826,FBtr0085828,FBtr0085830;parent_type=mRNA" - - - - -	16986	27,556,332 – 27,556,425	+	12	96	77.65	-2.04	0.50	0.938715
12360	dm3.chr3R	27,588,277 – 27,588,431	- - - - - - - -	16987	27,588,277 – 27,588,431	+	5	159	74.60	-1.79	0.64	0.952072
12360	dm3.chr3R	27,588,277 – 27,588,431	- - - - - - - -	16988	27,588,277 – 27,588,431	-	5	159	74.60	-1.86	0.61	0.947486
12361	dm3.chr3R	27,601,339 – 27,601,439	- - CDS="CDS;ID=CDS_FBgn0039876:2_3;Name=CG2126-cds;Parent=FBtr0085857;parent_type=mRNA" - - - - -	16989	27,601,339 – 27,601,439	-	14	115	66.20	-0.69	0.46	0.783895
12362	dm3.chr3R	27,602,727 – 27,602,828	- - - - - - - -	16990	27,602,727 – 27,602,828	+	10	110	63.17	-1.64	0.26	0.670287
12363	dm3.chr3R	27,615,898 – 27,615,990	- - - - - - - -	16991	27,615,898 – 27,615,990	-	6	92	94.10	-2.05	0.81	0.708431
12364	dm3.chr3R	27,620,377 – 27,620,472	- - - intron="intron;ID=intron_CG1966:1_CG1966:2;Name=Acf1-in;Parent=FBtr0085845;parent_type=mRNA" - - - -	16992	27,620,377 – 27,620,472	+	7	110	68.06	-1.48	0.41	0.731116
12365	dm3.chr3R	27,644,773 – 27,644,834	- - - intron="intron;ID=intron_FBgn0039883:3_FBgn0039883:5;Name=RhoGAP100F-in;Parent=FBtr0302179,FBtr0302181;parent_type=mRNA" - - - -	16993	27,644,773 – 27,644,834	-	7	75	57.06	-1.32	0.32	0.652662
12366	dm3.chr3R	27,665,635 – 27,665,725	- - - - - - - -	16994	27,665,635 – 27,665,725	-	8	96	80.25	-1.64	0.73	0.932104
12367	dm3.chr3R	27,687,807 – 27,687,884	- - - intron="intron;ID=intron_FBgn0011224:8_FBgn0011224:7;Name=heph-in;Parent=FBtr0085887,FBtr0085888,FBtr0085879,FBtr0085880,FBtr0085881,FBtr0085882,FBtr0085883,FBtr0085884,FBtr0085885,FBtr0085886,FBtr0085878,FBtr0112864,FBtr0112865,FBtr0112866,FBtr0300263,FBtr0300264,FBtr0300265,FBtr0300266,FBtr0300267,FBtr0300268,FBtr0300269,FBtr0300270;parent_type=mRNA" - - - -	16995	27,687,807 – 27,687,884	+	12	89	91.35	-2.37	0.91	0.984048
12368	dm3.chr3R	27,690,305 – 27,690,415	- - CDS="CDS;ID=CDS_FBgn0011224:8_163;Name=heph-cds;Parent=FBtr0085878;parent_type=mRNA" - - - - -	16996	27,690,305 – 27,690,415	-	15	119	79.13	-0.44	0.80	0.579252
12369	dm3.chr3R	27,693,828 – 27,693,923	- - - intron="intron;ID=intron_FBgn0011224:12_FBgn0011224:11;Name=heph-in;Parent=FBtr0085887,FBtr0085888,FBtr0085879,FBtr0085880,FBtr0085881,FBtr0085882,FBtr0085883,FBtr0085884,FBtr0085885,FBtr0085886,FBtr0085878,FBtr0112864,FBtr0112865,FBtr0112866,FBtr0300263,FBtr0300264,FBtr0300265,FBtr0300266,FBtr0300267,FBtr0300268,FBtr0300269,FBtr0300270;parent_type=mRNA" - - - -	16997	27,693,828 – 27,693,923	+	12	120	68.57	-1.18	0.48	0.683339
12370	dm3.chr3R	27,723,808 – 27,723,923	- - - intron="intron;ID=intron_FBgn0011224:14_FBgn0011224:13;Name=heph-in;Parent=FBtr0112864;parent_type=mRNA" - - - -	16998	27,723,808 – 27,723,923	-	12	120	84.72	-1.10	0.89	0.783187
12371	dm3.chr3R	27,742,104 – 27,742,210	- - - intron="intron;ID=intron_FBgn0011224:14_FBgn0011224:13;Name=heph-in;Parent=FBtr0112864;parent_type=mRNA" - - - -	16999	27,742,104 – 27,742,196	-	6	92	85.22	-2.11	0.75	0.936253
12371	dm3.chr3R	27,742,104 – 27,742,210		17000	27,742,117 – 27,742,210	-	7	93	71.69	-1.44	0.44	0.612887
12372	dm3.chr3R	27,750,723 – 27,750,813	- - - intron="intron;ID=intron_FBgn0011224:23_FBgn0011224:14;Name=heph-in;Parent=FBtr0112864;parent_type=mRNA" - - - -	17001	27,750,723 – 27,750,813	-	12	115	81.44	-1.32	0.78	0.801042
12373	dm3.chr3R	27,757,875 – 27,757,983	- - CDS="CDS;ID=CDS_FBgn0011224:15_168;Name=heph-cds;Parent=FBtr0300266;parent_type=mRNA" intron="intron;ID=intron_FBgn0011224:23_FBgn0011224:14;Name=heph-in;Parent=FBtr0112864;parent_type=mRNA" - - - -	17002	27,757,875 – 27,757,983	+	7	112	76.57	-1.34	0.58	0.717098
12374	dm3.chr3R	27,772,617 – 27,772,714	- - - intron="intron;ID=intron_FBgn0011224:23_FBgn0011224:22;Name=heph-in;Parent=FBtr0112865;parent_type=mRNA" - - - -	17003	27,772,617 – 27,772,714	-	6	105	79.44	-1.46	0.62	0.557390
12375	dm3.chr3R	27,785,513 – 27,785,618	- - - intron="intron;ID=intron_FBgn0011224:24_FBgn0011224:23;Name=heph-in;Parent=FBtr0085879,FBtr0085881,FBtr0085882,FBtr0085878,FBtr0112865,FBtr0112866,FBtr0300263,FBtr0300264,FBtr0300266,FBtr0300270;parent_type=mRNA" - - - -	17004	27,785,513 – 27,785,618	+	5	107	89.59	-2.72	0.65	0.852280
12376	dm3.chr3R	27,813,233 – 27,813,310	- - - intron="intron;ID=intron_CG2003:5_CG2003:2;Name=CG2003-in;Parent=FBtr0085871;parent_type=mRNA" - - - -	17005	27,813,233 – 27,813,310	-	6	83	72.82	-1.18	0.70	0.904752
12377	dm3.chr3R	27,823,553 – 27,823,658	- - - - - - - -	17006	27,823,553 – 27,823,658	+	5	105	88.76	-1.89	0.79	0.763770
12378	dm3.chr3R	27,851,656 – 27,851,747	- - - - - - - -	17007	27,851,656 – 27,851,747	+	3	113	79.94	-3.12	0.79	0.996349
12379	dm3.chr3R	27,890,893 – 27,890,983	- - - intron="intron;ID=intron_CG1483:1_CG1483:3;Name=Map205-in;Parent=FBtr0085876;parent_type=mRNA" - - - -	17008	27,890,893 – 27,890,983	+	6	91	78.85	-2.30	0.60	0.968928
12380	dm3.chr4	23,764 – 23,853	- - - - - - - -	17009	23,764 – 23,853	+	3	90	53.90	-1.93	0.33	0.878242
12381	dm3.chr4	124,962 – 125,062	- - CDS="CDS;ID=CDS_FBgn0085432:22_1049;Name=pan-cds;Parent=FBtr0304743;parent_type=mRNA" - - - - -	17010	124,962 – 125,062	-	9	103	77.42	-0.91	0.65	0.556100
12382	dm3.chr4	181,171 – 181,284	- - - intron="intron;ID=intron_CG33978:8_CG33978:9;Name=CG33978-in;Parent=FBtr0100021;parent_type=mRNA" - - - -	17011	181,171 – 181,284	+	11	114	64.48	-1.22	0.32	0.669656
12383	dm3.chr4	215,182 – 215,281	- - - - - - - -	17012	215,182 – 215,281	+	3	100	57.86	-3.34	0.49	0.999428
12383	dm3.chr4	215,182 – 215,281	- - - - - - - -	17013	215,182 – 215,281	-	3	100	57.86	-2.34	0.35	0.884173
12384	dm3.chr4	269,187 – 269,296	- - - - - - - -	17014	269,187 – 269,296	+	4	116	49.78	-2.17	0.49	0.999490
12384	dm3.chr4	269,187 – 269,296	- - - - - - - -	17015	269,187 – 269,296	-	4	116	49.78	-1.82	0.54	0.999190
12385	dm3.chr4	314,305 – 314,359	- - - intron="intron;ID=intron_FBgn0039900:9_FBgn0039900:8;Name=Syt7-in;Parent=FBtr0089134,FBtr0089139,FBtr0089137,FBtr0089138,FBtr0100397,FBtr0114475,FBtr0305658,FBtr0305659,FBtr0305660;parent_type=mRNA" - - - -	17016	314,305 – 314,359	-	6	55	70.43	-1.71	0.37	0.610894
12386	dm3.chr4	342,337 – 342,436	- - - - - - - -	17017	342,337 – 342,436	-	4	99	89.90	-1.73	0.84	0.736651
12387	dm3.chr4	394,393 – 394,460	- - - - - - - -	17018	394,393 – 394,460	-	3	67	65.83	-0.90	0.71	0.720229
12388	dm3.chr4	446,885 – 447,000	- - - - - - - -	17019	446,885 – 447,000	+	9	116	78.08	-1.52	0.54	0.565099
12389	dm3.chr4	451,048 – 451,146	- - - - - - - -	17020	451,048 – 451,146	-	3	119	80.85	-1.57	0.85	0.861478
12390	dm3.chr4	479,805 – 479,871	- - - - - - - -	17021	479,805 – 479,871	-	3	66	50.78	-1.81	0.38	0.950950
12391	dm3.chr4	493,756 – 493,830	- - CDS="CDS;ID=CDS_FBgn0039908:4_1047;Name=Asator-cds;Parent=FBtr0300342;parent_type=mRNA" - - - - -	17022	493,756 – 493,830	+	12	74	65.94	-0.86	0.40	0.722602
12392	dm3.chr4	498,458 – 498,550	- - CDS="CDS;ID=CDS_FBgn0039908:9_1047;Name=Asator-cds;Parent=FBtr0300342,FBtr0300343;parent_type=mRNA" - - - - -	17023	498,458 – 498,550	+	3	92	54.35	-1.68	0.30	0.527727
12393	dm3.chr4	527,620 – 527,720	- - - intron="intron;ID=intron_CG1449:1_CG1449:2;Name=zfh2-in;Parent=FBtr0089070;parent_type=mRNA" - - - -	17024	527,620 – 527,720	+	5	100	78.28	-1.52	0.63	0.701719
12394	dm3.chr4	550,652 – 550,767	- - CDS="CDS;ID=CDS_CG1449:6_1037;Name=zfh2-cds;Parent=FBtr0089070;parent_type=mRNA" - - - - -	17025	550,652 – 550,767	+	12	115	63.01	-1.08	0.30	0.529741
12395	dm3.chr4	567,034 – 567,147	- - CDS="CDS;ID=CDS_CG1981:6_1037;Name=Thd1-cds;Parent=FBtr0089106;parent_type=mRNA" - - - - -	17026	567,034 – 567,134	+	5	100	65.92	-1.04	0.58	0.827384
				17027	567,034 – 567,134	-	5	100	65.92	-1.57	0.69	0.989037
				17028	567,047 – 567,147	-	8	109	67.63	-0.93	0.49	0.645754
12396	dm3.chr4	577,635 – 577,743	- - - intron="intron;ID=intron_CG1981:1_CG1981:2;Name=Thd1-in;Parent=FBtr0089106;parent_type=mRNA" - - - -	17029	577,635 – 577,743	+	5	109	80.54	-1.91	0.61	0.686685
12397	dm3.chr4	577,998 – 578,130	- - - - - - - -	17030	577,998 – 578,099	-	6	120	79.44	-1.90	0.72	0.934980
12397	dm3.chr4	577,998 – 578,130	- - - - - - - -	17031	578,035 – 578,130	-	6	115	75.87	-2.17	0.56	0.934171
12398	dm3.chr4	614,138 – 614,262	- - - - - - - -	17032	614,138 – 614,248	+	3	110	60.30	-3.05	0.48	0.999133
				17033	614,138 – 614,248	-	3	110	60.30	-2.80	0.32	0.970658
				17034	614,172 – 614,262	+	3	96	55.67	-2.52	0.54	0.999110
				17035	614,172 – 614,262	-	3	96	55.67	-1.95	0.38	0.928944
12399	dm3.chr4	646,687 – 646,763	- - - - - - - -	17036	646,687 – 646,763	-	5	89	64.21	-1.71	0.38	0.689889
12400	dm3.chr4	670,062 – 670,154	- - - - - - - -	17037	670,062 – 670,154	-	13	116	81.01	-2.10	0.45	0.515962
12401	dm3.chr4	717,410 – 717,613	- - - - - - - -	17038	717,410 – 717,508	+	4	98	72.38	-1.34	0.56	0.549539
12401	dm3.chr4	717,410 – 717,613	- - - - - - - -	17039	717,508 – 717,613	-	5	112	70.03	-1.17	0.57	0.718878
12402	dm3.chr4	719,005 – 719,075	- - - intron="intron;ID=intron_CG1464:1_CG1464:2;Name=ey-in;Parent=FBtr0089235;parent_type=mRNA" - - - -	17040	719,005 – 719,075	-	3	70	89.52	-1.64	0.84	0.616679
12403	dm3.chr4	723,686 – 723,785	- - - intron="intron;ID=intron_CG1464:1_CG1464:2;Name=ey-in;Parent=FBtr0089235;parent_type=mRNA" - - - -	17041	723,686 – 723,785	-	8	109	69.86	-1.53	0.44	0.790297
12404	dm3.chr4	724,813 – 725,007	- - - intron="intron;ID=intron_CG1464:1_CG1464:2;Name=ey-in;Parent=FBtr0089235;parent_type=mRNA" - - - -	17042	724,813 – 724,931	+	6	120	65.09	-1.49	0.44	0.915447
				17043	724,853 – 724,967	+	6	119	68.62	-1.62	0.41	0.806570
				17044	724,893 – 725,007	-	5	117	83.59	-3.07	0.70	0.993718
12405	dm3.chr4	733,901 – 734,045	- - - intron="intron;ID=intron_CG1464:3_CG1464:4;Name=ey-in;Parent=FBtr0089235,FBtr0089236,FBtr0100395,FBtr0100396;parent_type=mRNA" - - - -	17045	733,901 – 733,999	-	5	107	90.35	-1.82	0.82	0.725664
				17046	733,928 – 734,039	-	5	120	74.82	-1.99	0.71	0.976180
				17047	733,934 – 734,045	-	5	120	78.69	-1.61	0.73	0.841396
12406	dm3.chr4	736,073 – 736,164	- - - intron="intron;ID=intron_CG1464:4_CG1464:5;Name=ey-in;Parent=FBtr0089235,FBtr0089236,FBtr0100395,FBtr0100396;parent_type=mRNA" - - - -	17048	736,073 – 736,164	+	4	99	74.87	-2.44	0.39	0.616417
12407	dm3.chr4	746,397 – 746,517	- - CDS="CDS;ID=CDS_FBgn0005666:2_1049;Name=bt-cds;Parent=FBtr0089793;parent_type=mRNA" - - - - -	17049	746,397 – 746,517	+	15	120	77.46	-1.90	0.37	0.588749
12408	dm3.chr4	789,272 – 789,389	- - CDS="CDS;ID=CDS_FBgn0005666:40_1049;Name=bt-cds;Parent=FBtr0089793;parent_type=mRNA" - - - - -	17050	789,272 – 789,389	-	15	120	73.01	-0.61	0.62	0.746049
12409	dm3.chr4	817,323 – 817,380	- - - - - - - -	17051	817,323 – 817,380	-	5	57	87.89	-1.80	0.89	0.927926
12410	dm3.chr4	820,664 – 820,737	- - - - - - - -	17052	820,664 – 820,737	+	4	73	63.22	-1.73	0.42	0.834933
12411	dm3.chr4	823,478 – 823,596	- - CDS="CDS;ID=CDS_CG11153:2_1037;Name=Sox102F-cds;Parent=FBtr0089252;parent_type=mRNA" - - - - -	17053	823,478 – 823,596	-	9	123	76.72	-1.75	0.54	0.857616
12412	dm3.chr4	827,716 – 828,036	- - - - - - - -	17054	827,716 – 827,836	+	4	120	80.75	-2.00	0.58	0.602822
				17055	827,716 – 827,836	-	4	120	80.75	-2.35	0.73	0.971213
				17056	827,756 – 827,876	-	4	120	80.97	-1.51	0.69	0.510145
				17057	827,876 – 827,996	-	5	120	94.92	-1.12	0.95	0.606579
				17058	827,916 – 828,036	-	4	120	83.40	-2.98	0.79	0.994512
12413	dm3.chr4	847,410 – 847,465	- - - intron="intron;ID=intron_CG11153:5_CG11153:6;Name=Sox102F-in;Parent=FBtr0100600;parent_type=mRNA" - - - -	17059	847,410 – 847,465	+	3	55	93.33	-1.90	1.02	0.983952
12414	dm3.chr4	854,822 – 854,958	- - - - - - - -	17060	854,822 – 854,958	+	3	136	97.06	-1.35	0.95	0.678462
12415	dm3.chr4	906,258 – 906,308	- - - intron="intron;ID=intron_CG2999:4_CG2999:28;Name=unc-13-in;Parent=FBtr0089246;parent_type=mRNA" - - - -	17061	906,258 – 906,308	-	3	50	86.67	-3.06	0.69	0.969187
12416	dm3.chr4	910,362 – 910,452	- - CDS="CDS;ID=CDS_CG2999:50_1034;Name=unc-13-cds;Parent=FBtr0089247;parent_type=mRNA" - - - - -	17062	910,362 – 910,452	+	10	91	60.60	-1.56	0.36	0.966606
12417	dm3.chr4	954,350 – 954,476	- - - - - - - -	17063	954,350 – 954,476	+	5	132	52.15	-1.71	0.35	0.965410
12417	dm3.chr4	954,350 – 954,476	- - - - - - - -	17064	954,350 – 954,476	-	5	132	52.15	-2.46	0.50	0.999787
12418	dm3.chr4	994,197 – 994,272	- - - intron="intron;ID=intron_FBgn0039932:7_FBgn0039932:6;Name=CG11093-in;Parent=FBtr0301335;parent_type=mRNA" - - - -	17065	994,197 – 994,272	-	11	76	83.73	-2.01	0.58	0.750346
12419	dm3.chr4	994,414 – 994,528	- - - intron="intron;ID=intron_FBgn0039932:7_FBgn0039932:6;Name=CG11093-in;Parent=FBtr0301335;parent_type=mRNA" - - - -	17066	994,414 – 994,528	+	10	119	88.30	-1.50	0.76	0.508987
12420	dm3.chr4	1,016,876 – 1,016,994	- - - intron="intron;ID=intron_CG11186:2_CG11186:3;Name=toy-in;Parent=FBtr0089185;parent_type=mRNA" - - - -	17067	1,016,876 – 1,016,992	+	3	118	92.09	-2.37	0.90	0.967078
				17068	1,016,876 – 1,016,992	-	3	118	92.09	-3.25	0.88	0.994301
				17069	1,016,878 – 1,016,994	+	3	118	91.53	-2.39	0.90	0.970825
				17070	1,016,878 – 1,016,994	-	3	118	91.53	-3.22	0.88	0.994332
12421	dm3.chr4	1,020,679 – 1,020,822	- - - intron="intron;ID=intron_CG11186:5_CG11186:6;Name=toy-in;Parent=FBtr0089185;parent_type=mRNA" - - - -	17071	1,020,679 – 1,020,786	+	4	116	59.29	-1.29	0.36	0.549450
12421	dm3.chr4	1,020,679 – 1,020,822		17072	1,020,716 – 1,020,822	+	4	114	54.83	-1.81	0.38	0.976260
12422	dm3.chr4	1,021,123 – 1,021,243	- - - intron="intron;ID=intron_CG11186:5_CG11186:6;Name=toy-in;Parent=FBtr0089185;parent_type=mRNA" - - - -	17073	1,021,123 – 1,021,243	+	5	120	57.55	-1.96	0.22	0.695733
12423	dm3.chr4	1,051,557 – 1,051,677	- - - intron="intron;ID=intron_FBgn0039929:3_FBgn0039929:1;Name=CG11076-in;Parent=FBtr0089220;parent_type=mRNA" - - - -	17074	1,051,557 – 1,051,677	-	3	121	67.46	-1.94	0.47	0.650893
12424	dm3.chr4	1,126,166 – 1,126,229	- - - intron="intron;ID=intron_FBgn0005561:7_FBgn0005561:8;Name=sv-in;Parent=FBtr0089327,FBtr0089328,FBtr0100342,FBtr0100343,FBtr0100344,FBtr0100345,FBtr0100346,FBtr0301563;parent_type=mRNA" - - - -	17075	1,126,166 – 1,126,229	-	3	63	93.65	-1.85	0.92	0.889623
12425	dm3.chr4	1,153,552 – 1,153,625	- - - intron="intron;ID=intron_CG11155:26_CG11155:12;Name=CG11155-in;Parent=FBtr0089194;parent_type=mRNA" - - - -	17076	1,153,552 – 1,153,625	+	4	74	64.85	-0.56	0.60	0.539675
12426	dm3.chr4	1,218,156 – 1,218,209	- - - - - - - -	17077	1,218,156 – 1,218,209	+	3	57	74.85	-1.09	0.89	0.820683
12427	dm3.chr4	1,268,748 – 1,268,907	- - CDS="CDS;ID=CDS_CG33653:22_1034;Name=Caps-cds;Parent=FBtr0091630;parent_type=mRNA" - - - - -	17078	1,268,748 – 1,268,867	+	13	120	80.84	-1.72	0.61	0.892334
				17079	1,268,748 – 1,268,867	-	13	120	80.84	-2.70	0.47	0.973697
				17080	1,268,787 – 1,268,907	+	13	120	81.97	-1.26	0.64	0.586953
12428	dm3.chrM	1,306 – 1,397	FBnoncoding="tRNA;ID=FBtr0100859;Name=mt:tRNA:C-RA;Parent=FBgn0013690;Dbxref=FlyBase_Annotation_IDs:CR34065-RA;score_text=Weakly" - - - "Rfam_10.0=RF00005;tRNA;AANI01016988.1/25238-25300\|2.0e-14" - - -	17081	1,306 – 1,397	-	12	97	70.55	-0.46	0.57	0.591574
12429	dm3.chrXHet	3,902 – 3,965	- - - intron="intron;ID=intron_FBgn0040030:1_FBgn0040030:5;Name=CG2893-in;Parent=FBtr0301132;parent_type=mRNA" - - - -	17082	3,902 – 3,965	+	9	66	59.56	-1.26	0.30	0.639626
12430	dm3.chrXHet	9,237 – 9,357	- - CDS="CDS;ID=CDS_FBgn0040030:6_1069;Name=CG2893-cds;Parent=FBtr0113768;parent_type=mRNA" - - - - -	17083	9,237 – 9,357	-	15	120	83.55	-2.03	0.55	0.829389
12431	dm3.chrXHet	63,846 – 63,941	- - - intron="intron;ID=intron_FBgn0040514:1_FBgn0040514:2;Name=CG17169-in;Parent=FBtr0302055;parent_type=mRNA" - - - -	17084	63,846 – 63,941	-	4	98	73.14	-2.16	0.47	0.814686
12432	dm3.chrXHet	151,595 – 151,651	- - - - - - - -	17085	151,595 – 151,651	+	3	56	66.07	-2.35	1.02	0.995159
12432	dm3.chrXHet	151,595 – 151,651	- - - - - - - -	17086	151,595 – 151,651	-	3	56	66.07	-1.19	0.67	0.827205
12433	dm3.chrXHet	158,238 – 158,357	- - - - - - - -	17087	158,238 – 158,357	+	4	120	47.80	-1.83	0.19	0.604160
12434	dm3.chrXHet	159,485 – 159,596	- - - - - - - -	17088	159,485 – 159,581	-	3	108	51.77	-1.44	0.58	0.989060
12434	dm3.chrXHet	159,485 – 159,596	- - - - - - - -	17089	159,500 – 159,596	-	3	111	47.95	-2.70	0.48	0.999634
12435	dm3.chrXHet	160,605 – 160,738	- - - - - - - -	17090	160,605 – 160,738	+	3	133	61.71	-1.96	0.36	0.728871
12435	dm3.chrXHet	160,605 – 160,738	- - - - - - - -	17091	160,605 – 160,738	-	3	133	61.71	-2.31	0.43	0.975541
12436	dm3.chrXHet	176,208 – 176,361	- - - - - - - -	17092	176,208 – 176,361	+	4	160	52.87	-1.20	0.36	0.822631
12436	dm3.chrXHet	176,208 – 176,361	- - - - - - - -	17093	176,208 – 176,361	-	4	160	52.87	-2.25	0.29	0.980405
12437	dm3.chrXHet	176,676 – 176,806	- - - - - - - -	17094	176,676 – 176,788	+	4	113	61.19	-1.83	0.47	0.984551
				17095	176,676 – 176,788	-	4	113	61.19	-2.47	0.38	0.991087
				17096	176,690 – 176,806	+	4	116	65.20	-2.82	0.49	0.998509
				17097	176,690 – 176,806	-	4	116	65.20	-2.69	0.45	0.996149
12438	dm3.chrXHet	184,061 – 184,187	FBnoncoding="rRNA;ID=FBtr0114215;Name=CR40677-RA;Parent=FBgn0085765;Dbxref=FlyBase_Annotation_IDs:CR40677-RA,REFSEQ:NR_004369;score_text=Weakly" - - - "Rfam_10.0=RF00002;5_8S_rRNA;AASU01039213.1/127-279\|2.0e-55" - - -	17098	184,061 – 184,187	+	14	130	83.33	-0.96	0.81	0.750611
12439	dm3.chrXHet	198,851 – 198,910	- - - - - - - -	17099	198,851 – 198,910	+	3	59	50.59	-1.96	0.50	0.996979
12440	dm3.chrXHet	199,272 – 199,336	- - - - - - - -	17100	199,272 – 199,336	+	3	66	55.10	-2.00	0.26	0.538188
12441	dm3.chrXHet	200,733 – 200,850	- - - - - - - -	17101	200,733 – 200,850	+	3	120	51.82	-2.14	0.20	0.500000
12442	dm3.chrXHet	203,355 – 203,543	- - - - - - - -	17102	203,355 – 203,448	+	4	93	63.06	-2.64	0.42	0.996726
				17103	203,390 – 203,488	+	4	98	63.08	-1.49	0.62	0.987473
				17104	203,412 – 203,528	+	4	116	57.16	-1.30	0.50	0.974858
				17105	203,424 – 203,543	+	4	119	53.38	-0.87	0.44	0.805829
12443	dm3.chrX	29,798 – 29,859	- - - intron="intron;ID=intron_FBgn0025836:4_FBgn0025836:5;Name=RhoGAP1A-in;Parent=FBtr0112919,FBtr0112920,FBtr0302200;parent_type=mRNA" - - - -	17106	29,798 – 29,859	+	4	62	63.96	-0.58	0.58	0.580351
12444	dm3.chrX	44,390 – 44,452	- - - intron="intron;ID=intron_FBgn0025835:12_FBgn0025835:11;Name=CG17707-in;Parent=FBtr0112918,FBtr0300673;parent_type=mRNA" - - - -	17107	44,390 – 44,452	+	5	65	59.34	-0.57	0.48	0.716459
12445	dm3.chrX	90,869 – 90,932	- - - intron="intron;ID=intron_CG17131:2_CG17131:3;Name=tyn-in;Parent=FBtr0100135;parent_type=mRNA" - - - -	17108	90,869 – 90,932	-	4	64	58.79	-1.83	0.33	0.860189
12446	dm3.chrX	97,521 – 97,600	- - - - - - - -	17109	97,521 – 97,600	-	6	99	67.86	-2.24	0.32	0.703134
12447	dm3.chrX	157,681 – 157,732	- - - - - - - -	17110	157,681 – 157,732	+	6	53	75.57	-1.33	0.77	0.935302
12448	dm3.chrX	159,065 – 159,115	- - - - - - - -	17111	159,065 – 159,115	+	3	53	60.90	-1.20	0.60	0.871579
12449	dm3.chrX	170,335 – 170,390	- - - intron="intron;ID=intron_CG3114:8_CG3114:9;Name=ewg-in;Parent=FBtr0100582,FBtr0089441,FBtr0100577,FBtr0100578,FBtr0100579,FBtr0100580,FBtr0100581;parent_type=mRNA" - - - -	17112	170,335 – 170,390	+	11	55	88.34	-3.02	0.69	0.985039
12449	dm3.chrX	170,335 – 170,390		17113	170,335 – 170,390	-	11	55	88.34	-2.49	0.64	0.870435
12450	dm3.chrX	174,207 – 174,311	FBnoncoding="pre_miRNA;ID=FBtr0304371;Name=mir-980-RM;Parent=FBgn0262266;Alias=CR42973-RM;Dbxref=FlyBase_Annotation_IDs:CR42973-RM,miRBase:MI0005837" - - intron="intron;ID=intron_CG3777:1_CG3777:2;Name=CG3777-in;Parent=FBtr0070066;parent_type=mRNA" - - - "mirBase_v16=dme-mir-980\|1.7e-49"	17114	174,207 – 174,311	-	12	109	71.54	-3.51	0.61	0.999926
12451	dm3.chrX	182,595 – 182,753	- - - intron="intron;ID=intron_FBgn0040370:4_FBgn0040370:3;Name=CG13375-in;Parent=FBtr0070103,FBtr0300326;parent_type=mRNA" - - - -	17115	182,595 – 182,714	+	5	120	80.76	-1.57	0.67	0.598623
12451	dm3.chrX	182,595 – 182,753		17116	182,634 – 182,753	+	5	120	76.66	-2.16	0.51	0.859317
12452	dm3.chrX	183,432 – 183,552	- - - intron="intron;ID=intron_FBgn0040370:5_FBgn0040370:4;Name=CG13375-in;Parent=FBtr0070103,FBtr0300326;parent_type=mRNA" - - - -	17117	183,432 – 183,552	+	3	120	70.14	-2.04	0.44	0.546479
12453	dm3.chrX	226,967 – 227,018	- - - intron="intron;ID=intron_FBgn0052816:3_FBgn0052816:1;Name=CG32816-in;Parent=FBtr0070102;parent_type=mRNA" - - - -	17118	226,967 – 227,018	-	7	63	69.74	-2.04	0.34	0.510977
12454	dm3.chrX	238,200 – 238,250	- - - intron="intron;ID=intron_CG3777:2_CG3777:3;Name=CG3777-in;Parent=FBtr0070066,FBtr0070067,FBtr0070068;parent_type=mRNA" - - - -	17119	238,200 – 238,250	-	5	51	92.50	-0.94	1.01	0.804718
12455	dm3.chrX	248,354 – 248,444	- - - - - - - -	17120	248,354 – 248,444	-	4	99	85.05	-2.22	0.61	0.539757
12456	dm3.chrX	283,415 – 283,562	- - - - - - - -	17121	283,415 – 283,529	-	4	115	80.49	-1.92	0.71	0.869936
12456	dm3.chrX	283,415 – 283,562	- - - - - - - -	17122	283,453 – 283,562	+	4	116	77.33	-2.58	0.63	0.980107
12457	dm3.chrX	283,689 – 283,782	- - - - - - - -	17123	283,689 – 283,782	+	5	115	68.62	-1.69	0.44	0.739348
12457	dm3.chrX	283,689 – 283,782	- - - - - - - -	17124	283,689 – 283,782	-	5	115	68.62	-2.53	0.39	0.960498
12458	dm3.chrX	289,194 – 289,248	- - - - - - - -	17125	289,194 – 289,248	+	3	56	91.67	-2.90	0.68	0.862464
12459	dm3.chrX	316,188 – 316,289	- - - intron="intron;ID=intron_FBgn0052816:6_FBgn0052816:5;Name=CG32816-in;Parent=FBtr0273443;parent_type=mRNA" - - - -	17126	316,188 – 316,289	-	12	119	78.18	-1.71	0.46	0.527156
12460	dm3.chrX	332,904 – 333,016	- - - - - - - -	17127	332,904 – 333,016	+	5	112	94.55	-1.85	0.84	0.643995
12461	dm3.chrX	337,044 – 337,098	- - - - - - - -	17128	337,044 – 337,098	+	3	54	96.30	-2.53	0.84	0.906266
12461	dm3.chrX	337,044 – 337,098	- - - - - - - -	17129	337,044 – 337,098	-	3	54	96.30	-2.02	0.88	0.810586
12462	dm3.chrX	342,673 – 342,734	- - - - - - - -	17130	342,673 – 342,734	+	12	68	90.57	-1.33	0.90	0.765781
12463	dm3.chrX	352,240 – 352,392	- - - - - - - -	17131	352,240 – 352,352	+	5	120	87.50	-3.06	0.80	0.992601
				17132	352,240 – 352,352	-	5	120	87.50	-2.43	0.73	0.912607
				17133	352,274 – 352,392	+	5	120	74.11	-2.55	0.73	0.996633
				17134	352,274 – 352,392	-	5	120	74.11	-2.52	0.51	0.972299
12464	dm3.chrX	370,473 – 370,587	- - - - - - - -	17135	370,473 – 370,579	-	6	108	80.06	-1.65	0.72	0.903749
				17136	370,482 – 370,587	+	6	110	81.31	-2.03	0.59	0.811173
				17137	370,482 – 370,587	-	6	110	81.31	-1.73	0.62	0.671842
12465	dm3.chrX	390,368 – 390,464	- - - - - - - -	17138	390,368 – 390,464	+	6	118	70.71	-1.29	0.73	0.945078
12465	dm3.chrX	390,368 – 390,464	- - - - - - - -	17139	390,368 – 390,464	-	6	118	70.71	-1.37	0.61	0.879564
12466	dm3.chrX	395,738 – 395,834	- - - intron="intron;ID=intron_FBgn0004648:4_FBgn0004648:5;Name=svr-in;Parent=FBtr0070083,FBtr0290017;parent_type=mRNA" - - - -	17140	395,738 – 395,828	+	6	109	84.91	-2.32	0.56	0.590704
				17141	395,738 – 395,828	-	6	109	84.91	-2.81	0.79	0.991090
				17142	395,738 – 395,834	+	6	115	86.45	-2.31	0.57	0.505094
				17143	395,738 – 395,834	-	6	115	86.45	-2.81	0.77	0.985952
12467	dm3.chrX	400,963 – 401,083	- - CDS="CDS;ID=CDS_FBgn0004648:12_955;Name=svr-cds;Parent=FBtr0290017;parent_type=mRNA" - - - - -	17144	400,963 – 401,083	+	13	120	75.52	-1.63	0.40	0.620687
12468	dm3.chrX	413,652 – 413,766	- - - intron="intron;ID=intron_FBgn0000570:2_FBgn0000570:1;Name=elav-in;Parent=FBtr0100254;parent_type=mRNA" - - - -	17145	413,652 – 413,766	-	3	120	90.83	-1.48	0.95	0.868249
12469	dm3.chrX	415,820 – 415,882	- - - intron="intron;ID=intron_FBgn0000570:4_FBgn0000570:3;Name=elav-in;Parent=FBtr0070091;parent_type=mRNA" - - - -	17146	415,820 – 415,882	-	5	63	95.19	-2.41	0.89	0.956439
12470	dm3.chrX	417,647 – 417,702	- - - - - - - -	17147	417,647 – 417,702	+	5	55	95.45	-2.11	0.82	0.722147
12470	dm3.chrX	417,647 – 417,702	- - - - - - - -	17148	417,647 – 417,702	-	5	55	95.45	-1.97	0.89	0.860803
12471	dm3.chrX	420,222 – 420,286	- - - - - - - -	17149	420,222 – 420,286	+	5	71	76.02	-1.40	0.67	0.750795
12471	dm3.chrX	420,222 – 420,286	- - - - - - - -	17150	420,222 – 420,286	-	5	71	76.02	-1.50	0.77	0.924630
12472	dm3.chrX	424,119 – 424,265	- - - - - - - -	17151	424,119 – 424,236	-	3	118	92.66	-2.85	0.79	0.952180
12472	dm3.chrX	424,119 – 424,265	- - - - - - - -	17152	424,158 – 424,265	-	4	120	73.11	-1.87	0.48	0.678037
12473	dm3.chrX	430,813 – 430,906	- - - intron="intron;ID=intron_CG7727:1_CG7727:2;Name=Appl-in;Parent=FBtr0070109;parent_type=mRNA" - - - -	17153	430,813 – 430,906	+	3	94	70.82	-1.39	0.72	0.859939
12474	dm3.chrX	432,927 – 433,032	- - - intron="intron;ID=intron_CG7727:1_CG7727:2;Name=Appl-in;Parent=FBtr0070109;parent_type=mRNA" - - - -	17154	432,927 – 433,032	+	6	116	68.83	-1.25	0.44	0.613248
12475	dm3.chrX	436,133 – 436,228	- - - intron="intron;ID=intron_CG7727:1_CG7727:2;Name=Appl-in;Parent=FBtr0070109;parent_type=mRNA" - - - -	17155	436,133 – 436,228	-	5	105	74.24	-1.02	0.71	0.789772
12476	dm3.chrX	439,197 – 439,304	- - - intron="intron;ID=intron_CG7727:1_CG7727:2;Name=Appl-in;Parent=FBtr0070109;parent_type=mRNA" - - - -	17156	439,197 – 439,304	-	4	115	71.02	-1.67	0.46	0.505541
12477	dm3.chrX	445,764 – 445,820	- - - intron="intron;ID=intron_CG7727:1_CG7727:2;Name=Appl-in;Parent=FBtr0070109;parent_type=mRNA" - - - -	17157	445,764 – 445,820	+	5	57	73.63	-1.19	0.81	0.946925
12477	dm3.chrX	445,764 – 445,820		17158	445,764 – 445,820	-	5	57	73.63	-0.86	0.73	0.776220
12478	dm3.chrX	457,828 – 457,916	- - - intron="intron;ID=intron_CG7727:2_CG7727:3;Name=Appl-in;Parent=FBtr0070109;parent_type=mRNA" - - - -	17159	457,828 – 457,916	+	5	93	59.89	-1.10	0.39	0.730997
12479	dm3.chrX	462,322 – 462,430	- - - intron="intron;ID=intron_CG7727:2_CG7727:3;Name=Appl-in;Parent=FBtr0070109;parent_type=mRNA" - - - -	17160	462,322 – 462,430	-	6	118	75.93	-2.32	0.34	0.500000
12480	dm3.chrX	474,038 – 474,090	- - - - - - - -	17161	474,038 – 474,090	+	6	64	78.57	-2.08	0.61	0.894616
12481	dm3.chrX	488,362 – 488,475	- - - intron="intron;ID=intron_FBgn0003986:3_FBgn0003986:4;Name=vnd-in;Parent=FBtr0070110,FBtr0110929;parent_type=mRNA" - - - -	17162	488,362 – 488,475	+	3	113	95.87	-1.82	0.88	0.705927
12481	dm3.chrX	488,362 – 488,475		17163	488,362 – 488,475	-	3	113	95.87	-2.76	0.98	0.993875
12482	dm3.chrX	489,394 – 489,532	- - - intron="intron;ID=intron_FBgn0003986:3_FBgn0003986:4;Name=vnd-in;Parent=FBtr0070110,FBtr0110929;parent_type=mRNA" - - - -	17164	489,394 – 489,492	+	3	98	93.20	-1.89	0.84	0.671698
12482	dm3.chrX	489,394 – 489,532		17165	489,434 – 489,532	-	3	98	92.49	-1.97	0.81	0.634354
12483	dm3.chrX	494,445 – 494,565	- - - - - - - -	17166	494,445 – 494,565	+	3	120	61.47	-1.18	0.60	0.874212
12484	dm3.chrX	513,185 – 513,278	- - - - - - - -	17167	513,185 – 513,278	+	7	98	76.59	-1.85	0.45	0.629083
12485	dm3.chrX	518,842 – 518,908	- - - - - - - -	17168	518,842 – 518,908	-	6	68	75.70	-1.01	0.65	0.651414
12486	dm3.chrX	519,222 – 519,289	- - - - - - - -	17169	519,222 – 519,289	+	5	69	82.15	-1.87	0.81	0.941560
12486	dm3.chrX	519,222 – 519,289	- - - - - - - -	17170	519,222 – 519,289	-	5	69	82.15	-2.01	0.80	0.957692
12487	dm3.chrX	522,481 – 522,591	- - CDS="CDS;ID=CDS_CG7622:3_891;Name=RpL36-cds;Parent=FBtr0070155;parent_type=mRNA" - - - - -	17171	522,481 – 522,591	-	14	119	81.22	-1.11	0.70	0.597987
12488	dm3.chrX	530,071 – 530,173	- - - - - - - -	17172	530,071 – 530,173	+	5	102	96.07	-1.41	0.96	0.797580
12489	dm3.chrX	552,182 – 552,369	- - - - - - - -	17173	552,182 – 552,302	+	4	120	76.73	-1.69	0.69	0.847005
				17174	552,182 – 552,302	-	4	120	76.73	-2.04	0.66	0.930909
				17175	552,222 – 552,342	-	5	120	79.98	-1.89	0.67	0.874422
				17176	552,249 – 552,369	-	5	120	74.32	-1.96	0.67	0.975451
12490	dm3.chrX	555,795 – 555,909	- - - - - - - -	17177	555,795 – 555,909	+	8	119	76.83	-1.88	0.45	0.596044
12491	dm3.chrX	561,579 – 561,681	- - - - - - - -	17178	561,579 – 561,681	+	6	106	73.83	-2.24	0.38	0.847438
12491	dm3.chrX	561,579 – 561,681	- - - - - - - -	17179	561,579 – 561,681	-	6	106	73.83	-1.51	0.48	0.692087
12492	dm3.chrX	573,934 – 574,024	- - - - - - - -	17180	573,934 – 574,024	-	4	90	89.81	-1.49	0.84	0.560906
12493	dm3.chrX	578,145 – 578,213	- - - - - - - -	17181	578,145 – 578,213	-	9	79	66.01	-1.24	0.52	0.962122
12494	dm3.chrX	580,048 – 580,104	- - - - - - - -	17182	580,048 – 580,104	-	5	56	95.67	-1.49	0.90	0.593784
12495	dm3.chrX	580,329 – 580,508	- - - - - - - -	17183	580,329 – 580,428	-	5	106	88.31	-2.13	0.91	0.973892
				17184	580,361 – 580,468	-	6	109	78.14	-1.61	0.58	0.736894
				17185	580,399 – 580,508	-	6	120	75.50	-1.78	0.54	0.831386
12496	dm3.chrX	582,859 – 582,960	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17186	582,859 – 582,960	-	5	118	75.32	-1.40	0.62	0.658072
12497	dm3.chrX	585,112 – 585,203	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17187	585,112 – 585,203	-	5	91	96.24	-1.56	0.90	0.630864
12498	dm3.chrX	586,050 – 586,169	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17188	586,050 – 586,169	+	5	120	92.65	-3.25	0.75	0.980291
12498	dm3.chrX	586,050 – 586,169		17189	586,050 – 586,169	-	5	120	92.65	-2.95	0.67	0.882643
12499	dm3.chrX	586,651 – 586,743	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17190	586,651 – 586,743	+	5	102	81.67	-2.45	0.50	0.751750
12500	dm3.chrX	587,104 – 587,224	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17191	587,104 – 587,224	+	5	120	83.83	-2.21	0.55	0.596085
12501	dm3.chrX	591,283 – 591,348	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17192	591,283 – 591,348	+	5	68	77.19	-1.67	0.57	0.680334
12502	dm3.chrX	592,613 – 592,692	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17193	592,613 – 592,692	+	4	89	63.53	-1.77	0.68	0.994592
12503	dm3.chrX	597,788 – 597,901	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17194	597,788 – 597,901	-	5	120	82.64	-2.26	0.76	0.970427
12504	dm3.chrX	601,777 – 601,881	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17195	601,777 – 601,881	+	4	119	76.04	-1.52	0.67	0.711861
12505	dm3.chrX	604,251 – 604,351	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17196	604,251 – 604,351	-	5	104	85.87	-2.11	0.76	0.898727
12506	dm3.chrX	609,330 – 609,470	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17197	609,330 – 609,449	-	3	119	92.66	-1.49	0.90	0.656325
12506	dm3.chrX	609,330 – 609,470		17198	609,370 – 609,470	-	4	100	89.23	-1.93	0.79	0.728478
12507	dm3.chrX	611,704 – 611,800	- - - intron="intron;ID=intron_FBgn0021764:6_FBgn0021764:7;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302260;parent_type=mRNA" - - - -	17199	611,704 – 611,800	-	6	117	57.19	-1.79	0.26	0.633893
12508	dm3.chrX	619,127 – 619,235	- - - intron="intron;ID=intron_FBgn0021764:7_FBgn0021764:8;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302259,FBtr0302260;parent_type=mRNA" - - - -	17200	619,127 – 619,235	-	5	114	83.29	-1.93	0.62	0.533637
12509	dm3.chrX	626,661 – 626,728	- - - intron="intron;ID=intron_FBgn0021764:10_FBgn0021764:11;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302259,FBtr0302260;parent_type=mRNA" - - - -	17201	626,661 – 626,728	+	9	79	77.44	-1.61	0.49	0.526605
12510	dm3.chrX	633,078 – 633,202	- - - intron="intron;ID=intron_FBgn0021764:12_FBgn0021764:13;Name=sdk-in;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302259,FBtr0302260;parent_type=mRNA" - - - -	17202	633,078 – 633,168	+	4	90	88.64	-1.30	0.96	0.870898
12510	dm3.chrX	633,078 – 633,202		17203	633,109 – 633,202	+	5	99	74.00	-1.96	0.55	0.933053
12511	dm3.chrX	641,559 – 641,682	- - CDS="CDS;ID=CDS_FBgn0021764:20_995;Name=sdk-cds;Parent=FBtr0070133,FBtr0070132,FBtr0070130,FBtr0070131,FBtr0302259,FBtr0302260;parent_type=mRNA" - - - - -	17204	641,559 – 641,679	+	15	120	82.35	-1.32	0.61	0.580720
				17205	641,559 – 641,679	-	15	120	82.35	-2.86	0.38	0.918203
				17206	641,562 – 641,682	-	15	120	81.93	-2.58	0.37	0.795574
12512	dm3.chrX	648,268 – 648,318	- - - - - - - -	17207	648,268 – 648,318	+	3	50	96.00	-1.39	1.02	0.930034
12513	dm3.chrX	649,922 – 650,052	- - - - - - - -	17208	649,922 – 650,020	-	5	106	88.19	-1.96	0.75	0.727437
12513	dm3.chrX	649,922 – 650,052	- - - - - - - -	17209	649,950 – 650,052	+	5	110	90.27	-1.04	0.91	0.520787
12514	dm3.chrX	653,152 – 653,270	- - - - - - - -	17210	653,152 – 653,270	-	5	120	77.63	-3.64	0.64	0.999170
12515	dm3.chrX	653,493 – 653,592	- - - - - - - -	17211	653,493 – 653,592	+	5	120	59.91	-0.98	0.51	0.818572
12515	dm3.chrX	653,493 – 653,592	- - - - - - - -	17212	653,493 – 653,592	-	5	120	59.91	-0.98	0.48	0.724621
12516	dm3.chrX	658,023 – 658,142	FBnoncoding="snoRNA;ID=FBtr0091922;Name=snoRNA:Psi28S-2179-RA;Parent=FBgn0086666;Alias=snoRNA:734-RA;Dbxref=FlyBase_Annotation_IDs:CR33918-RA,REFSEQ:NR_002459;score_text=Weakly" - - intron="intron;ID=intron_FBgn0015288:2_FBgn0015288:1;Name=RpL22-in;Parent=FBtr0070148;parent_type=mRNA" - "Noncode_2.0=n3524_u3151_AJ544022_snoRNA_Drosophila\|3.8e-41" "unique_Noncode_2.0=u3151_snoRNA_Drosophila\|3.3e-41" -	17213	658,023 – 658,120	-	11	119	74.96	-0.83	0.67	0.528852
12516	dm3.chrX	658,023 – 658,142		17214	658,049 – 658,142	-	11	114	65.61	-0.88	0.61	0.966487
12517	dm3.chrX	662,492 – 662,676	- - - - - - - -	17215	662,492 – 662,676	+	3	188	89.01	-2.85	0.77	0.964136
12518	dm3.chrX	665,663 – 665,754	- - - intron="intron;ID=intron_FBgn0027343:1_FBgn0027343:3;Name=fz3-in;Parent=FBtr0070138;parent_type=mRNA" - - - -	17216	665,663 – 665,754	+	5	103	84.40	-1.88	0.78	0.875656
12519	dm3.chrX	684,492 – 684,600	- - - - - - - -	17217	684,492 – 684,600	-	5	117	63.41	-1.45	0.42	0.865596
12520	dm3.chrX	685,103 – 685,221	- - - - - - - -	17218	685,103 – 685,221	+	4	120	69.53	-1.62	0.53	0.818864
12521	dm3.chrX	697,025 – 697,140	- - CDS="CDS;ID=CDS_CG13359:1_904;Name=CG13359-cds;Parent=FBtr0070145;parent_type=mRNA" - - - - -	17219	697,025 – 697,140	+	4	115	70.61	-1.34	0.64	0.844496
12521	dm3.chrX	697,025 – 697,140		17220	697,025 – 697,140	-	4	115	70.61	-1.22	0.60	0.669012
12522	dm3.chrX	699,819 – 699,934	- - - intron="intron;ID=intron_FBgn0026874:4_FBgn0026874:3;Name=CG13358-in;Parent=FBtr0305568;parent_type=mRNA" - - - -	17221	699,819 – 699,934	+	4	119	73.82	-2.28	0.55	0.950181
12523	dm3.chrX	700,848 – 700,949	- - - intron="intron;ID=intron_CG7359:2_CG7359:3;Name=Sec22-in;Parent=FBtr0070141;parent_type=mRNA" - - - -	17222	700,848 – 700,949	+	5	103	77.93	-1.99	0.66	0.935072
12524	dm3.chrX	712,459 – 712,565	- - CDS="CDS;ID=CDS_FBgn0259100:4_947;Name=CG42248-cds;Parent=FBtr0299512;parent_type=mRNA" - - - - -	17223	712,459 – 712,565	-	14	109	78.82	-2.00	0.45	0.813726
12525	dm3.chrX	732,788 – 732,872	- - - - - - - -	17224	732,788 – 732,872	-	7	99	63.27	-0.64	0.48	0.582763
12526	dm3.chrX	746,801 – 746,900	- - - intron="intron;ID=intron_FBgn0259100:12_FBgn0259100:11;Name=CG42248-in;Parent=FBtr0299511;parent_type=mRNA" - - - -	17225	746,801 – 746,900	+	5	119	60.28	-0.60	0.52	0.605705
12527	dm3.chrX	752,304 – 752,405	- - - intron="intron;ID=intron_FBgn0259100:12_FBgn0259100:11;Name=CG42248-in;Parent=FBtr0299511;parent_type=mRNA" - - - -	17226	752,304 – 752,405	-	5	102	75.35	-2.01	0.62	0.965105
12528	dm3.chrX	759,339 – 759,437	- - - - - - - -	17227	759,339 – 759,437	-	12	113	75.04	-1.43	0.46	0.547947
12529	dm3.chrX	760,025 – 760,126	- - - - - - - -	17228	760,025 – 760,119	-	5	103	63.05	-1.34	0.39	0.616999
12529	dm3.chrX	760,025 – 760,126	- - - - - - - -	17229	760,032 – 760,126	-	5	103	67.83	-1.07	0.56	0.791603
12530	dm3.chrX	761,443 – 761,508	- - - - - - - -	17230	761,443 – 761,508	+	12	65	95.15	-2.47	0.90	0.973562
12531	dm3.chrX	761,704 – 761,823	- - - - - - - -	17231	761,704 – 761,823	+	5	122	69.90	-1.25	0.51	0.513066
12532	dm3.chrX	777,080 – 777,171	- - - intron="intron;ID=intron_FBgn0259100:13_FBgn0259100:12;Name=CG42248-in;Parent=FBtr0299511;parent_type=mRNA" - - - -	17232	777,080 – 777,171	+	4	101	90.71	-2.31	0.79	0.881600
12533	dm3.chrX	778,673 – 778,803	- - - - - - - -	17233	778,673 – 778,774	+	4	103	75.25	-1.08	0.79	0.733830
				17234	778,673 – 778,774	-	4	103	75.25	-2.38	0.85	0.994719
				17235	778,696 – 778,803	-	4	109	70.06	-0.95	0.61	0.519487
12534	dm3.chrX	786,543 – 786,655	- - - intron="intron;ID=intron_FBgn0029538:3_FBgn0029538:1;Name=CG14632-in;Parent=FBtr0070193;parent_type=mRNA" - - - -	17236	786,543 – 786,655	-	4	112	84.68	-1.93	0.67	0.570450
12535	dm3.chrX	796,530 – 796,614	- - - - - - - -	17237	796,530 – 796,614	+	6	84	96.83	-1.83	0.95	0.913523
12536	dm3.chrX	804,005 – 804,104	- - - - - - - -	17238	804,005 – 804,104	-	5	106	71.75	-1.71	0.50	0.840703
12537	dm3.chrX	809,017 – 809,133	- - - - - - - -	17239	809,017 – 809,133	+	5	116	86.21	-1.98	0.80	0.896158
12537	dm3.chrX	809,017 – 809,133	- - - - - - - -	17240	809,017 – 809,133	-	5	116	86.21	-2.95	0.83	0.994221
12538	dm3.chrX	812,374 – 812,464	- - - - - - - -	17241	812,374 – 812,464	+	4	115	76.01	-1.31	0.69	0.582626
12539	dm3.chrX	814,347 – 814,484	- - - - - - - -	17242	814,347 – 814,449	+	10	121	90.74	-2.76	0.78	0.972833
				17243	814,347 – 814,449	-	10	121	90.74	-2.15	0.77	0.825160
				17244	814,367 – 814,484	+	12	120	94.80	-1.11	0.94	0.591637
12540	dm3.chrX	821,157 – 821,249	- - CDS="CDS;ID=CDS_FBgn0040344:7_1030;Name=CG3711-cds;Parent=FBtr0070191,FBtr0100527;parent_type=mRNA" - - - - -	17245	821,157 – 821,249	+	6	111	76.20	-1.08	0.71	0.613289
12541	dm3.chrX	826,535 – 826,642	- - - - - - - -	17246	826,535 – 826,642	-	5	110	71.35	-1.09	0.63	0.797594
12542	dm3.chrX	826,726 – 826,826	- - - - - - - -	17247	826,726 – 826,826	+	3	107	78.59	-1.43	0.76	0.603690
12542	dm3.chrX	826,726 – 826,826	- - - - - - - -	17248	826,726 – 826,826	-	3	107	78.59	-1.66	0.75	0.755168
12543	dm3.chrX	829,916 – 829,989	- - - intron="intron;ID=intron_FBgn0040340:1_FBgn0040340:4;Name=TRAM-in;Parent=FBtr0070167;parent_type=mRNA" - - - -	17249	829,916 – 829,989	-	4	74	64.11	-1.24	0.46	0.770770
12544	dm3.chrX	846,175 – 846,225	- - - - - - - -	17250	846,175 – 846,225	+	4	50	93.00	-2.94	0.84	0.982978
12545	dm3.chrX	846,764 – 846,877	- - - - - - - -	17251	846,764 – 846,877	-	8	118	92.38	-1.81	0.90	0.902088
12546	dm3.chrX	848,406 – 848,497	- - - - - - - -	17252	848,406 – 848,497	+	8	106	78.29	-2.18	0.53	0.917601
12546	dm3.chrX	848,406 – 848,497	- - - - - - - -	17253	848,406 – 848,497	-	8	106	78.29	-1.83	0.58	0.861370
12547	dm3.chrX	853,248 – 853,351	- - - - - - - -	17254	853,248 – 853,351	-	3	103	93.85	-3.02	0.93	0.994043
12548	dm3.chrX	853,626 – 853,752	- - - - - - - -	17255	853,626 – 853,729	-	7	118	60.05	-2.04	0.30	0.937311
				17256	853,653 – 853,752	+	6	99	76.57	-2.91	0.48	0.991479
				17257	853,653 – 853,752	-	6	99	76.57	-3.84	0.50	0.999412
12549	dm3.chrX	855,447 – 855,542	- - - - - - - -	17258	855,447 – 855,542	+	3	95	97.89	-1.61	0.91	0.631368
12549	dm3.chrX	855,447 – 855,542	- - - - - - - -	17259	855,447 – 855,542	-	3	95	97.89	-1.33	0.97	0.743074
12550	dm3.chrX	855,681 – 855,782	- - - - - - - -	17260	855,681 – 855,782	-	6	103	86.70	-2.17	0.61	0.611553
12551	dm3.chrX	855,917 – 856,062	- - - - - - - -	17261	855,917 – 856,009	+	4	108	84.35	-1.11	0.91	0.698017
				17262	855,929 – 856,049	+	4	120	95.34	-1.37	0.91	0.551654
				17263	855,942 – 856,062	+	4	120	95.34	-1.11	0.96	0.619239
12552	dm3.chrX	857,088 – 857,204	- - - - - - - -	17264	857,088 – 857,204	-	4	118	86.61	-2.39	0.69	0.852010
12553	dm3.chrX	858,220 – 858,275	- - - - - - - -	17265	858,220 – 858,275	+	6	60	76.82	-2.12	0.52	0.899108
12554	dm3.chrX	863,955 – 864,013	- - - - - - - -	17266	863,955 – 864,013	-	4	60	86.35	-1.75	0.78	0.693634
12555	dm3.chrX	865,571 – 865,639	- - - - - - - -	17267	865,571 – 865,639	+	4	71	64.93	-1.08	0.52	0.563134
12556	dm3.chrX	866,305 – 866,362	- - - - - - - -	17268	866,305 – 866,362	-	7	57	89.47	-0.55	1.07	0.847899
12557	dm3.chrX	869,445 – 869,546	- - - - - - - -	17269	869,445 – 869,546	+	6	116	73.79	-2.39	0.54	0.982223
12558	dm3.chrX	887,302 – 887,422	- - - - - - - -	17270	887,302 – 887,422	-	5	120	82.08	-1.34	0.73	0.556286
12559	dm3.chrX	894,605 – 894,701	- - - - - - - -	17271	894,605 – 894,701	+	8	105	73.32	-1.77	0.49	0.895254
12560	dm3.chrX	901,500 – 901,589	- - - - - - - -	17272	901,500 – 901,589	-	10	93	74.84	-1.06	0.57	0.586871
12561	dm3.chrX	902,692 – 902,811	- - - - - - - -	17273	902,692 – 902,811	+	4	120	78.38	-1.64	0.64	0.641162
12562	dm3.chrX	902,947 – 903,049	- - - - - - - -	17274	902,947 – 903,049	+	5	104	74.53	-0.98	0.66	0.552679
12563	dm3.chrX	903,655 – 903,794	- - - - - - - -	17275	903,655 – 903,755	-	5	120	80.72	-2.04	0.71	0.915526
				17276	903,692 – 903,794	+	5	120	76.48	-2.51	0.71	0.992301
				17277	903,692 – 903,794	-	5	120	76.48	-2.66	0.66	0.992634
12564	dm3.chrX	905,592 – 905,665	- - - - - - - -	17278	905,592 – 905,665	+	7	86	55.66	-0.71	0.46	0.904304
12565	dm3.chrX	911,381 – 911,433	- - - intron="intron;ID=intron_FBgn0040351:5_FBgn0040351:4;Name=CG11638-in;Parent=FBtr0070183;parent_type=mRNA" - - - -	17279	911,381 – 911,433	+	6	53	78.84	-1.15	0.68	0.518685
12566	dm3.chrX	928,168 – 928,266	- - - intron="intron;ID=intron_FBgn0003638:4_FBgn0003638:7;Name=su(w[a])-in;Parent=FBtr0070178;parent_type=mRNA" - - - -	17280	928,168 – 928,266	+	5	108	50.88	-3.46	-0.00	0.881770
12567	dm3.chrX	947,444 – 947,560	- - - - - - - -	17281	947,444 – 947,560	+	3	116	93.68	-1.95	0.84	0.701833
12567	dm3.chrX	947,444 – 947,560	- - - - - - - -	17282	947,444 – 947,560	-	3	116	93.68	-1.86	0.88	0.791630
12568	dm3.chrX	950,834 – 951,008	- - - - - - - -	17283	950,834 – 950,945	-	3	111	94.59	-0.97	0.97	0.566212
				17284	950,905 – 951,008	+	4	103	68.45	-2.05	0.51	0.968905
				17285	950,905 – 951,008	-	4	103	68.45	-1.51	0.48	0.720004
12569	dm3.chrX	975,496 – 975,590	- - - - - - - -	17286	975,496 – 975,590	+	5	94	75.52	-2.05	0.49	0.772604
12570	dm3.chrX	978,989 – 979,040	- - - - - - - -	17287	978,989 – 979,040	+	3	51	60.13	-0.74	0.59	0.601694
12571	dm3.chrX	985,153 – 985,306	- - - intron="intron;ID=intron_FBgn0040397:6_FBgn0040397:5;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17288	985,153 – 985,306	+	3	172	83.63	-2.32	0.64	0.717858
12572	dm3.chrX	989,866 – 989,940	- - - intron="intron;ID=intron_FBgn0040397:6_FBgn0040397:5;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17289	989,866 – 989,940	-	4	74	85.81	-2.40	0.80	0.966158
12573	dm3.chrX	995,270 – 995,384	- - - intron="intron;ID=intron_FBgn0040397:6_FBgn0040397:5;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17290	995,270 – 995,381	+	4	111	83.86	-2.39	0.65	0.878948
12573	dm3.chrX	995,270 – 995,384		17291	995,273 – 995,384	+	4	111	84.01	-1.87	0.67	0.562162
12574	dm3.chrX	998,920 – 999,019	- - - intron="intron;ID=intron_FBgn0040397:7_FBgn0040397:6;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17292	998,920 – 999,019	+	9	105	74.76	-1.31	0.49	0.712322
12575	dm3.chrX	999,604 – 999,698	- - - intron="intron;ID=intron_FBgn0040397:7_FBgn0040397:6;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17293	999,604 – 999,698	+	5	100	94.50	-1.27	0.97	0.802159
12576	dm3.chrX	1,000,063 – 1,000,164	- - - intron="intron;ID=intron_FBgn0040397:7_FBgn0040397:6;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17294	1,000,063 – 1,000,162	-	6	112	77.71	-1.23	0.68	0.661713
12576	dm3.chrX	1,000,063 – 1,000,164		17295	1,000,072 – 1,000,164	-	6	112	76.13	-1.65	0.65	0.879201
12577	dm3.chrX	1,002,762 – 1,002,902	- - - intron="intron;ID=intron_FBgn0040397:7_FBgn0040397:6;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17296	1,002,762 – 1,002,902	+	6	142	66.31	-1.77	0.38	0.865940
12578	dm3.chrX	1,003,647 – 1,003,703	- - - intron="intron;ID=intron_FBgn0040397:7_FBgn0040397:6;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17297	1,003,647 – 1,003,703	+	4	62	77.05	-1.56	0.83	0.934076
12579	dm3.chrX	1,008,153 – 1,008,262	- - - intron="intron;ID=intron_FBgn0040397:7_FBgn0040397:6;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17298	1,008,153 – 1,008,253	-	12	121	72.76	-1.68	0.37	0.547789
12579	dm3.chrX	1,008,153 – 1,008,262		17299	1,008,165 – 1,008,262	-	11	111	75.83	-2.18	0.61	0.992568
12580	dm3.chrX	1,010,310 – 1,010,407	- - - intron="intron;ID=intron_FBgn0040397:7_FBgn0040397:6;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17300	1,010,310 – 1,010,407	+	5	97	91.13	-1.90	0.86	0.859375
12581	dm3.chrX	1,013,352 – 1,013,485	- - - intron="intron;ID=intron_FBgn0040397:7_FBgn0040397:6;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17301	1,013,352 – 1,013,485	+	4	168	67.48	-2.37	0.42	0.967499
12581	dm3.chrX	1,013,352 – 1,013,485		17302	1,013,352 – 1,013,485	-	4	168	67.48	-2.26	0.45	0.971906
12582	dm3.chrX	1,018,691 – 1,018,810	- - - intron="intron;ID=intron_FBgn0040397:8_FBgn0040397:7;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17303	1,018,691 – 1,018,810	-	5	119	85.24	-1.62	0.72	0.539296
12583	dm3.chrX	1,019,496 – 1,019,608	- - - intron="intron;ID=intron_FBgn0040397:8_FBgn0040397:7;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17304	1,019,496 – 1,019,608	+	5	120	66.15	-1.28	0.42	0.569950
12584	dm3.chrX	1,021,878 – 1,021,975	- - - intron="intron;ID=intron_FBgn0040397:8_FBgn0040397:7;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17305	1,021,878 – 1,021,975	+	4	109	85.14	-2.08	0.73	0.814346
12585	dm3.chrX	1,027,502 – 1,027,604	- - - intron="intron;ID=intron_FBgn0040397:8_FBgn0040397:7;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17306	1,027,502 – 1,027,604	+	5	108	81.04	-2.42	0.51	0.715072
12586	dm3.chrX	1,028,151 – 1,028,244	- - - intron="intron;ID=intron_FBgn0040397:8_FBgn0040397:7;Name=CG3655-in;Parent=FBtr0113327;parent_type=mRNA" - - - -	17307	1,028,151 – 1,028,244	-	5	101	85.80	-2.37	0.69	0.882906
12587	dm3.chrX	1,030,018 – 1,030,125	- - - - - - - -	17308	1,030,018 – 1,030,125	+	5	120	73.82	-1.30	0.71	0.842082
12587	dm3.chrX	1,030,018 – 1,030,125	- - - - - - - -	17309	1,030,018 – 1,030,125	-	5	120	73.82	-0.94	0.86	0.852437
12588	dm3.chrX	1,031,363 – 1,031,454	- - - - - - - -	17310	1,031,363 – 1,031,454	+	11	117	81.31	-2.03	0.60	0.841694
12589	dm3.chrX	1,046,601 – 1,046,671	- - - - - - - -	17311	1,046,601 – 1,046,671	+	3	70	77.20	-3.57	0.99	0.998800
12589	dm3.chrX	1,046,601 – 1,046,671	- - - - - - - -	17312	1,046,601 – 1,046,671	-	3	70	77.20	-0.77	0.92	0.590382
12590	dm3.chrX	1,048,335 – 1,048,479	- - - - - - - -	17313	1,048,335 – 1,048,439	+	3	104	97.43	-2.26	0.95	0.964693
				17314	1,048,335 – 1,048,439	-	3	104	97.43	-1.48	0.95	0.752778
				17315	1,048,375 – 1,048,479	+	3	104	97.43	-1.61	0.96	0.850746
				17316	1,048,375 – 1,048,479	-	3	104	97.43	-1.32	0.95	0.644235
12591	dm3.chrX	1,072,845 – 1,072,919	- - - - - - - -	17317	1,072,845 – 1,072,919	+	10	86	55.67	-1.47	0.41	0.991502
12592	dm3.chrX	1,075,885 – 1,075,963	- - - intron="intron;ID=intron_FBgn0040361:1_FBgn0040361:2;Name=CG14627-in;Parent=FBtr0070199;parent_type=mRNA" - - - -	17318	1,075,885 – 1,075,963	+	3	80	88.66	-0.30	1.09	0.782982
12593	dm3.chrX	1,083,483 – 1,083,596	- - - - - - - -	17319	1,083,483 – 1,083,596	-	4	113	72.03	-1.19	0.61	0.598178
12594	dm3.chrX	1,093,165 – 1,093,269	- - - - - - - -	17320	1,093,165 – 1,093,269	+	6	107	87.37	-2.06	0.70	0.760831
12595	dm3.chrX	1,096,909 – 1,097,007	- - - - - - - -	17321	1,096,909 – 1,097,007	+	6	105	67.35	-0.72	0.54	0.679018
12596	dm3.chrX	1,100,272 – 1,100,386	- - - - - - - -	17322	1,100,272 – 1,100,381	+	5	114	80.97	-3.73	0.34	0.961253
				17323	1,100,272 – 1,100,381	-	5	114	80.97	-4.91	0.53	0.999673
				17324	1,100,277 – 1,100,386	+	5	114	82.51	-3.31	0.36	0.850767
				17325	1,100,277 – 1,100,386	-	5	114	82.51	-4.42	0.57	0.999295
12597	dm3.chrX	1,102,098 – 1,102,212	- - - - - - - -	17326	1,102,098 – 1,102,212	-	4	120	69.46	-2.35	0.44	0.955625
12598	dm3.chrX	1,103,720 – 1,103,789	- - - - - - - -	17327	1,103,720 – 1,103,789	-	6	78	69.67	-1.60	0.61	0.978442
12599	dm3.chrX	1,116,196 – 1,116,295	- - - intron="intron;ID=intron_FBgn0026875:6_FBgn0026875:5;Name=CG3638-in;Parent=FBtr0301968;parent_type=mRNA" - - - -	17328	1,116,196 – 1,116,295	+	5	102	83.78	-1.72	0.68	0.547660
12599	dm3.chrX	1,116,196 – 1,116,295		17329	1,116,196 – 1,116,295	-	5	102	83.78	-1.53	0.77	0.684117
12600	dm3.chrX	1,119,021 – 1,119,125	- - - intron="intron;ID=intron_FBgn0026875:11_FBgn0026875:10;Name=CG3638-in;Parent=FBtr0301968,FBtr0070249,FBtr0070246;parent_type=mRNA" - - - -	17330	1,119,021 – 1,119,125	+	3	104	96.79	-1.01	0.98	0.600102
12601	dm3.chrX	1,124,047 – 1,124,151	- - - intron="intron;ID=intron_FBgn0026875:14_FBgn0026875:13;Name=CG3638-in;Parent=FBtr0301968,FBtr0070246;parent_type=mRNA" - - - -	17331	1,124,047 – 1,124,151	+	5	104	84.23	-1.92	0.62	0.549033
12602	dm3.chrX	1,125,365 – 1,125,500	- - - intron="intron;ID=intron_FBgn0026875:14_FBgn0026875:13;Name=CG3638-in;Parent=FBtr0301968,FBtr0070246;parent_type=mRNA" - - - -	17332	1,125,365 – 1,125,463	-	6	101	70.26	-1.55	0.50	0.928117
				17333	1,125,388 – 1,125,492	+	6	115	63.83	-1.12	0.48	0.888160
				17334	1,125,388 – 1,125,492	-	6	115	63.83	-1.35	0.44	0.899801
				17335	1,125,396 – 1,125,500	+	5	115	77.69	-1.69	0.72	0.904682
				17336	1,125,396 – 1,125,500	-	5	115	77.69	-1.85	0.71	0.936588
12603	dm3.chrX	1,126,371 – 1,126,493	- - - intron="intron;ID=intron_FBgn0026875:14_FBgn0026875:13;Name=CG3638-in;Parent=FBtr0301968,FBtr0070246;parent_type=mRNA" - - - -	17337	1,126,371 – 1,126,493	+	5	130	68.57	-0.70	0.59	0.543993
12604	dm3.chrX	1,129,457 – 1,129,573	- - - - - - - -	17338	1,129,457 – 1,129,573	+	5	116	81.23	-2.03	0.59	0.688688
12605	dm3.chrX	1,130,456 – 1,130,520	- - - - - - - -	17339	1,130,456 – 1,130,520	+	6	65	70.73	-1.54	0.51	0.891641
12606	dm3.chrX	1,142,848 – 1,142,982	- - - intron="intron;ID=intron_FBgn0028550:3_FBgn0028550:2;Name=Atf3-in;Parent=FBtr0070244;parent_type=mRNA" - - - -	17340	1,142,848 – 1,142,982	+	3	134	77.33	-1.27	0.85	0.756854
12607	dm3.chrX	1,147,046 – 1,147,294	- - - intron="intron;ID=intron_FBgn0028550:5_FBgn0028550:4;Name=Atf3-in;Parent=FBtr0070244;parent_type=mRNA" - - - -	17341	1,147,046 – 1,147,166	-	3	121	65.62	-1.62	0.54	0.808226
12607	dm3.chrX	1,147,046 – 1,147,294		17342	1,147,166 – 1,147,294	+	4	138	80.82	-1.83	0.67	0.712217
12608	dm3.chrX	1,155,263 – 1,155,400	- - - intron="intron;ID=intron_FBgn0028550:6_FBgn0028550:5;Name=Atf3-in;Parent=FBtr0070244;parent_type=mRNA" - - - -	17343	1,155,263 – 1,155,400	+	4	142	71.36	-1.80	0.47	0.620163
12609	dm3.chrX	1,156,541 – 1,156,605	- - - intron="intron;ID=intron_FBgn0028550:6_FBgn0028550:5;Name=Atf3-in;Parent=FBtr0070244;parent_type=mRNA" - - - -	17344	1,156,541 – 1,156,605	+	6	64	60.10	-1.04	0.44	0.874920
12610	dm3.chrX	1,157,468 – 1,157,567	- - - intron="intron;ID=intron_FBgn0028550:6_FBgn0028550:5;Name=Atf3-in;Parent=FBtr0070244;parent_type=mRNA" - - - -	17345	1,157,468 – 1,157,567	+	5	109	76.02	-1.21	0.69	0.667635
12611	dm3.chrX	1,164,958 – 1,165,055	- - - intron="intron;ID=intron_FBgn0028550:6_FBgn0028550:5;Name=Atf3-in;Parent=FBtr0070244;parent_type=mRNA" - - - -	17346	1,164,958 – 1,165,055	+	5	97	80.36	-2.00	0.76	0.955798
12612	dm3.chrX	1,166,389 – 1,166,478	- - - intron="intron;ID=intron_FBgn0028550:6_FBgn0028550:5;Name=Atf3-in;Parent=FBtr0070244;parent_type=mRNA" - - - -	17347	1,166,389 – 1,166,478	+	3	89	97.75	-2.06	0.93	0.914758
12613	dm3.chrX	1,173,744 – 1,173,799	- - - - - - - -	17348	1,173,744 – 1,173,799	-	6	60	78.41	-2.14	0.67	0.974506
12614	dm3.chrX	1,182,985 – 1,183,085	- - - - - - - -	17349	1,182,985 – 1,183,085	+	5	120	76.08	-1.25	0.64	0.550688
12615	dm3.chrX	1,188,650 – 1,188,747	- - - - - - - -	17350	1,188,650 – 1,188,747	-	4	100	76.01	-1.96	0.75	0.965267
12616	dm3.chrX	1,190,914 – 1,191,015	- - - - - - - -	17351	1,190,914 – 1,191,015	+	5	101	96.44	-1.98	0.97	0.959846
12617	dm3.chrX	1,195,714 – 1,195,805	- - - - - - - -	17352	1,195,714 – 1,195,805	+	6	107	56.79	-1.33	0.31	0.645816
12618	dm3.chrX	1,197,316 – 1,197,414	- - - - - - - -	17353	1,197,316 – 1,197,414	+	7	111	70.30	-0.73	0.61	0.630914
12618	dm3.chrX	1,197,316 – 1,197,414	- - - - - - - -	17354	1,197,316 – 1,197,414	-	7	111	70.30	-1.65	0.38	0.525536
12619	dm3.chrX	1,198,079 – 1,198,174	- - - - - - - -	17355	1,198,079 – 1,198,174	+	4	95	82.27	-1.84	0.70	0.716333
12620	dm3.chrX	1,208,269 – 1,208,384	- - - intron="intron;ID=intron_FBgn0025641:15_FBgn0025641:14;Name=DAAM-in;Parent=FBtr0070239;parent_type=mRNA" - - - -	17356	1,208,269 – 1,208,384	-	6	116	77.25	-2.67	0.53	0.988848
12621	dm3.chrX	1,209,143 – 1,209,262	- - - intron="intron;ID=intron_FBgn0025641:15_FBgn0025641:14;Name=DAAM-in;Parent=FBtr0070239;parent_type=mRNA" - - - -	17357	1,209,143 – 1,209,262	+	4	120	78.76	-1.98	0.65	0.871128
12622	dm3.chrX	1,209,512 – 1,209,617	- - - intron="intron;ID=intron_FBgn0025641:15_FBgn0025641:14;Name=DAAM-in;Parent=FBtr0070239;parent_type=mRNA" - - - -	17358	1,209,512 – 1,209,617	+	5	106	89.74	-1.85	0.80	0.740407
12623	dm3.chrX	1,210,709 – 1,210,817	- - - intron="intron;ID=intron_FBgn0025641:16_FBgn0025641:15;Name=DAAM-in;Parent=FBtr0070239;parent_type=mRNA" - - - -	17359	1,210,709 – 1,210,817	+	5	109	77.54	-2.50	0.48	0.920761
12624	dm3.chrX	1,211,605 – 1,211,725	- - - intron="intron;ID=intron_FBgn0025641:16_FBgn0025641:15;Name=DAAM-in;Parent=FBtr0070239;parent_type=mRNA" - - - -	17360	1,211,605 – 1,211,725	+	4	120	84.31	-1.48	0.87	0.845915
12625	dm3.chrX	1,213,199 – 1,213,289	- - - intron="intron;ID=intron_FBgn0025641:16_FBgn0025641:15;Name=DAAM-in;Parent=FBtr0070239;parent_type=mRNA" - - - -	17361	1,213,199 – 1,213,289	-	3	90	77.53	-1.91	0.61	0.638248
12626	dm3.chrX	1,215,662 – 1,215,752	- - - intron="intron;ID=intron_FBgn0025641:16_FBgn0025641:15;Name=DAAM-in;Parent=FBtr0070239;parent_type=mRNA" - - - -	17362	1,215,662 – 1,215,752	+	5	101	58.26	-0.82	0.40	0.528994
12627	dm3.chrX	1,215,988 – 1,216,085	- - - intron="intron;ID=intron_FBgn0025641:16_FBgn0025641:15;Name=DAAM-in;Parent=FBtr0070239;parent_type=mRNA" - - - -	17363	1,215,988 – 1,216,080	+	3	96	56.83	-2.76	0.22	0.772266
12627	dm3.chrX	1,215,988 – 1,216,085		17364	1,215,989 – 1,216,085	+	3	97	53.63	-2.90	0.25	0.969260
12628	dm3.chrX	1,230,298 – 1,230,407	- - - - - - - -	17365	1,230,298 – 1,230,407	-	6	109	68.48	-1.40	0.49	0.905468
12629	dm3.chrX	1,237,598 – 1,237,725	- - - intron="intron;ID=intron_FBgn0024362:5_FBgn0024362:6;Name=CG11412-in;Parent=FBtr0070209;parent_type=mRNA" - - - -	17366	1,237,598 – 1,237,725	-	3	137	88.32	-1.20	0.96	0.809500
12630	dm3.chrX	1,262,689 – 1,262,742	- - - - - - - -	17367	1,262,689 – 1,262,742	+	4	53	82.08	-1.91	0.65	0.609027
12631	dm3.chrX	1,267,077 – 1,267,175	- - CDS="CDS;ID=CDS_FBgn0024987:6_1005;Name=CG3056-cds;Parent=FBtr0070215;parent_type=mRNA" - - - - -	17368	1,267,077 – 1,267,175	+	11	110	90.19	-1.85	0.75	0.580709
12632	dm3.chrX	1,297,217 – 1,297,322	- - - - - - - -	17369	1,297,217 – 1,297,322	+	3	107	97.49	-1.66	0.90	0.629858
12633	dm3.chrX	1,298,551 – 1,298,701	- - - - - - - -	17370	1,298,551 – 1,298,662	+	4	115	94.25	-1.46	0.93	0.752340
				17371	1,298,602 – 1,298,701	+	3	107	87.86	-1.69	0.81	0.586457
				17372	1,298,602 – 1,298,701	-	3	107	87.86	-1.61	0.88	0.788678
12634	dm3.chrX	1,319,425 – 1,319,561	- - - intron="intron;ID=intron_FBgn0259108:1_FBgn0259108:3;Name=futsch-in;Parent=FBtr0112628;parent_type=mRNA" - - - -	17373	1,319,425 – 1,319,561	+	5	154	72.93	-1.31	0.61	0.781112
12635	dm3.chrX	1,320,699 – 1,320,751	- - - intron="intron;ID=intron_FBgn0259108:1_FBgn0259108:3;Name=futsch-in;Parent=FBtr0112628;parent_type=mRNA" - - - -	17374	1,320,699 – 1,320,751	+	4	52	98.08	-1.70	0.90	0.651328
12635	dm3.chrX	1,320,699 – 1,320,751		17375	1,320,699 – 1,320,751	-	4	52	98.08	-3.67	1.00	0.998337
12636	dm3.chrX	1,322,449 – 1,322,568	- - - intron="intron;ID=intron_FBgn0259108:3_FBgn0259108:4;Name=futsch-in;Parent=FBtr0112628,FBtr0300225;parent_type=mRNA" - - - -	17376	1,322,449 – 1,322,568	+	5	120	77.92	-1.41	0.65	0.688785
12637	dm3.chrX	1,326,659 – 1,326,711	- - - intron="intron;ID=intron_FBgn0259108:3_FBgn0259108:4;Name=futsch-in;Parent=FBtr0112628,FBtr0300225;parent_type=mRNA" - - - -	17377	1,326,659 – 1,326,711	+	3	52	94.81	-2.46	0.77	0.749921
12638	dm3.chrX	1,355,375 – 1,355,491	- - CDS="CDS;ID=CDS_FBgn0027793:1_905;Name=CG14787-cds;Parent=FBtr0070298;parent_type=mRNA" - - - - -	17378	1,355,375 – 1,355,491	-	6	119	75.67	-1.54	0.59	0.862089
12639	dm3.chrX	1,360,877 – 1,360,985	- - - - - - - -	17379	1,360,877 – 1,360,985	+	6	115	63.36	-0.97	0.42	0.582981
12640	dm3.chrX	1,365,150 – 1,365,240	- - CDS="CDS;ID=CDS_CG14779:12_880;Name=pck-cds;Parent=FBtr0100198;parent_type=mRNA" - - - - -	17380	1,365,150 – 1,365,240	+	11	101	66.21	-0.44	0.50	0.700470
12641	dm3.chrX	1,372,426 – 1,372,533	- - - - - - - -	17381	1,372,426 – 1,372,533	-	3	107	78.19	-1.29	0.77	0.568575
12642	dm3.chrX	1,378,857 – 1,378,953	- - - - - - - -	17382	1,378,857 – 1,378,953	-	7	109	67.48	-2.13	0.25	0.506450
12643	dm3.chrX	1,379,921 – 1,380,017	- - - - - - - -	17383	1,379,921 – 1,380,017	-	6	106	79.53	-2.84	0.35	0.728964
12644	dm3.chrX	1,380,330 – 1,380,425	- - - - - - - -	17384	1,380,330 – 1,380,425	-	3	96	99.31	-1.07	1.00	0.699144
12645	dm3.chrX	1,393,558 – 1,393,665	- - - - - - - -	17385	1,393,558 – 1,393,665	-	4	120	82.33	-1.92	0.73	0.806995
12646	dm3.chrX	1,395,148 – 1,395,244	- - - - - - - -	17386	1,395,148 – 1,395,244	-	5	96	59.83	-1.89	0.28	0.828430
12647	dm3.chrX	1,400,419 – 1,400,529	- - - intron="intron;ID=intron_FBgn0053513:16_FBgn0053513:14;Name=Nmdar2-in;Parent=FBtr0301844;parent_type=mRNA" - - - -	17387	1,400,419 – 1,400,529	-	3	110	83.03	-1.40	0.91	0.858714
12648	dm3.chrX	1,402,725 – 1,402,826	- - - - - - - -	17388	1,402,725 – 1,402,826	-	3	113	80.83	-1.45	0.82	0.742181
12649	dm3.chrX	1,403,171 – 1,403,285	- - - - - - - -	17389	1,403,171 – 1,403,285	-	4	115	72.63	-1.70	0.57	0.839055
12650	dm3.chrX	1,411,316 – 1,411,436	- - - - - - - -	17390	1,411,316 – 1,411,436	-	5	120	76.54	-1.58	0.62	0.764205
12651	dm3.chrX	1,412,452 – 1,412,557	- - - - - - - -	17391	1,412,452 – 1,412,557	+	3	112	60.60	-1.10	0.51	0.583321
12652	dm3.chrX	1,412,604 – 1,412,701	- - - - - - - -	17392	1,412,604 – 1,412,701	+	4	99	63.28	-1.41	0.40	0.637089
12652	dm3.chrX	1,412,604 – 1,412,701	- - - - - - - -	17393	1,412,604 – 1,412,701	-	4	99	63.28	-1.41	0.38	0.531272
12653	dm3.chrX	1,425,133 – 1,425,264	- - - intron="intron;ID=intron_FBgn0025390:3_FBgn0025390:1;Name=Mur2B-in;Parent=FBtr0303587;parent_type=mRNA" - - - -	17394	1,425,133 – 1,425,241	+	4	111	63.49	-1.62	0.40	0.694446
12653	dm3.chrX	1,425,133 – 1,425,264		17395	1,425,164 – 1,425,264	+	4	100	61.23	-1.48	0.43	0.822777
12654	dm3.chrX	1,431,971 – 1,432,090	- - - intron="intron;ID=intron_FBgn0025390:3_FBgn0025390:1;Name=Mur2B-in;Parent=FBtr0303587;parent_type=mRNA" - - - -	17396	1,431,971 – 1,432,090	-	3	119	92.72	-1.84	0.82	0.563112
12655	dm3.chrX	1,448,136 – 1,448,299	- - - intron="intron;ID=intron_FBgn0025390:5_FBgn0025390:3;Name=Mur2B-in;Parent=FBtr0303587;parent_type=mRNA" - - - -	17397	1,448,136 – 1,448,226	+	7	96	73.10	-1.74	0.53	0.934216
				17398	1,448,136 – 1,448,226	-	7	96	73.10	-0.94	0.58	0.583287
				17399	1,448,192 – 1,448,299	+	3	114	60.30	-1.25	0.48	0.597916
12656	dm3.chrX	1,451,770 – 1,451,888	- - - - - - - -	17400	1,451,770 – 1,451,888	+	5	118	77.61	-1.59	0.58	0.525531
12657	dm3.chrX	1,453,618 – 1,453,732	- - - intron="intron;ID=intron_FBgn0025390:8_FBgn0025390:7;Name=Mur2B-in;Parent=FBtr0070284,FBtr0303587;parent_type=mRNA" - - - -	17401	1,453,618 – 1,453,732	+	5	120	89.46	-1.96	0.72	0.535433
12658	dm3.chrX	1,466,332 – 1,466,422	- - - intron="intron;ID=intron_FBgn0025390:8_FBgn0025390:7;Name=Mur2B-in;Parent=FBtr0070284,FBtr0303587;parent_type=mRNA" - - - -	17402	1,466,332 – 1,466,422	+	4	90	70.90	-2.04	0.65	0.978613
12658	dm3.chrX	1,466,332 – 1,466,422		17403	1,466,332 – 1,466,422	-	4	90	70.90	-4.32	0.80	0.999692
12659	dm3.chrX	1,469,031 – 1,469,132	- - - intron="intron;ID=intron_FBgn0025390:8_FBgn0025390:7;Name=Mur2B-in;Parent=FBtr0070284,FBtr0303587;parent_type=mRNA" - - - -	17404	1,469,031 – 1,469,132	-	6	103	82.29	-1.50	0.75	0.761928
12660	dm3.chrX	1,473,891 – 1,473,941	- - - intron="intron;ID=intron_FBgn0000210:1_FBgn0000210:7;Name=br-in;Parent=FBtr0303564;parent_type=mRNA" - - - -	17405	1,473,891 – 1,473,941	+	3	50	100.00	-2.20	1.00	0.979015
12660	dm3.chrX	1,473,891 – 1,473,941		17406	1,473,891 – 1,473,941	-	3	50	100.00	-1.63	1.00	0.918258
12661	dm3.chrX	1,489,207 – 1,489,299	- - - intron="intron;ID=intron_FBgn0025390:9_FBgn0025390:8;Name=Mur2B-in;Parent=FBtr0070284,FBtr0303587;parent_type=mRNA" - - - -	17407	1,489,207 – 1,489,299	+	8	115	66.82	-1.07	0.45	0.717050
12662	dm3.chrX	1,515,572 – 1,515,631	- - - intron="intron;ID=intron_FBgn0000210:5_FBgn0000210:7;Name=br-in;Parent=FBtr0300428;parent_type=mRNA" - - - -	17408	1,515,572 – 1,515,631	+	5	59	87.29	-2.00	0.76	0.819003
12662	dm3.chrX	1,515,572 – 1,515,631		17409	1,515,572 – 1,515,631	-	5	59	87.29	-3.37	0.68	0.991794
12663	dm3.chrX	1,518,957 – 1,519,012	- - - intron="intron;ID=intron_FBgn0000210:7_FBgn0000210:8;Name=br-in;Parent=FBtr0070261,FBtr0070262,FBtr0070263,FBtr0070265,FBtr0070266,FBtr0300427,FBtr0300428,FBtr0300429,FBtr0300430,FBtr0303562,FBtr0303563,FBtr0303564;parent_type=mRNA" - - - -	17410	1,518,957 – 1,519,012	-	4	56	90.77	-2.00	0.90	0.939441
12664	dm3.chrX	1,532,602 – 1,532,713	- - - intron="intron;ID=intron_FBgn0000210:12_FBgn0000210:13;Name=br-in;Parent=FBtr0070262,FBtr0303563,FBtr0303564;parent_type=mRNA" - - - -	17411	1,532,602 – 1,532,704	+	5	105	77.27	-1.29	0.64	0.508662
12664	dm3.chrX	1,532,602 – 1,532,713		17412	1,532,611 – 1,532,713	+	5	105	78.61	-1.59	0.65	0.728649
12665	dm3.chrX	1,534,344 – 1,534,410	- - - intron="intron;ID=intron_FBgn0000210:12_FBgn0000210:13;Name=br-in;Parent=FBtr0070262,FBtr0303563,FBtr0303564;parent_type=mRNA" - - - -	17413	1,534,344 – 1,534,410	+	4	67	92.77	-2.16	0.83	0.845618
12666	dm3.chrX	1,538,042 – 1,538,105	- - - - - - - -	17414	1,538,042 – 1,538,105	-	4	63	94.26	-2.52	1.00	0.994020
12667	dm3.chrX	1,540,580 – 1,540,648	- - - - - - - -	17415	1,540,580 – 1,540,648	+	7	69	61.29	-1.76	0.71	0.999610
12667	dm3.chrX	1,540,580 – 1,540,648	- - - - - - - -	17416	1,540,580 – 1,540,648	-	7	69	61.29	-0.40	0.47	0.735299
12668	dm3.chrX	1,542,489 – 1,542,638	- - CDS="CDS;ID=CDS_FBgn0000210:15_963;Name=br-cds;Parent=FBtr0300430;parent_type=mRNA" - - - - -	17417	1,542,489 – 1,542,588	+	5	99	69.48	-0.97	0.73	0.911539
				17418	1,542,489 – 1,542,588	-	5	99	69.48	-1.36	0.67	0.959067
				17419	1,542,544 – 1,542,638	+	5	94	81.38	-1.54	0.75	0.807376
12669	dm3.chrX	1,547,713 – 1,547,850	- - - - - - - -	17420	1,547,713 – 1,547,850	-	3	137	95.61	-0.96	0.98	0.590905
12670	dm3.chrX	1,549,648 – 1,549,755	- - - - - - - -	17421	1,549,648 – 1,549,755	+	4	117	82.29	-1.89	0.64	0.569094
12671	dm3.chrX	1,550,286 – 1,550,373	- - - intron="intron;ID=intron_FBgn0000210:19_FBgn0000210:20;Name=br-in;Parent=FBtr0303562;parent_type=mRNA" - - - -	17422	1,550,286 – 1,550,373	-	4	89	92.23	-1.35	0.91	0.647543
12672	dm3.chrX	1,552,141 – 1,552,282	- - - intron="intron;ID=intron_FBgn0000210:19_FBgn0000210:20;Name=br-in;Parent=FBtr0303562;parent_type=mRNA" - - - -	17423	1,552,141 – 1,552,244	-	7	116	67.87	-1.75	0.45	0.904955
				17424	1,552,181 – 1,552,282	+	5	116	88.88	-2.22	0.74	0.796521
				17425	1,552,181 – 1,552,282	-	5	116	88.88	-2.39	0.85	0.968119
12673	dm3.chrX	1,552,948 – 1,553,056	- - CDS="CDS;ID=CDS_FBgn0000210:20_955;Name=br-cds;Parent=FBtr0070265;parent_type=mRNA" - - - - -	17426	1,552,948 – 1,553,056	+	7	108	80.95	-1.46	0.60	0.542414
12674	dm3.chrX	1,556,021 – 1,556,076	- - - - - - - -	17427	1,556,021 – 1,556,076	+	4	62	85.19	-2.08	0.68	0.652180
12674	dm3.chrX	1,556,021 – 1,556,076	- - - - - - - -	17428	1,556,021 – 1,556,076	-	4	62	85.19	-2.10	0.84	0.946749
12675	dm3.chrX	1,563,544 – 1,563,640	- - - - - - - -	17429	1,563,544 – 1,563,640	-	7	106	62.55	-1.82	0.36	0.942790
12676	dm3.chrX	1,568,023 – 1,568,122	- - - - - - - -	17430	1,568,023 – 1,568,122	+	5	115	61.16	-1.35	0.43	0.740784
12677	dm3.chrX	1,568,571 – 1,568,715	- - - - - - - -	17431	1,568,571 – 1,568,715	+	7	177	62.96	-1.05	0.40	0.535739
12678	dm3.chrX	1,568,994 – 1,569,093	- - - - - - - -	17432	1,568,994 – 1,569,093	-	5	120	56.10	-1.76	0.33	0.818257
12679	dm3.chrX	1,569,912 – 1,570,007	- - CDS="CDS;ID=CDS_FBgn0023531:2_968;Name=CG32809-cds;Parent=FBtr0089815;parent_type=mRNA" - - - - -	17433	1,569,912 – 1,570,007	+	5	95	86.21	-1.59	0.80	0.676955
12679	dm3.chrX	1,569,912 – 1,570,007		17434	1,569,912 – 1,570,007	-	5	95	86.21	-2.51	0.58	0.710225
12680	dm3.chrX	1,572,824 – 1,572,925	- - - intron="intron;ID=intron_FBgn0023531:5_FBgn0023531:3;Name=CG32809-in;Parent=FBtr0089815;parent_type=mRNA" - - - -	17435	1,572,824 – 1,572,925	-	4	120	72.95	-1.14	0.66	0.508996
12681	dm3.chrX	1,579,122 – 1,579,339	- - - intron="intron;ID=intron_FBgn0023531:14_FBgn0023531:13;Name=CG32809-in;Parent=FBtr0089815,FBtr0089814;parent_type=mRNA" - - - -	17436	1,579,122 – 1,579,212	-	5	102	89.87	-1.26	0.90	0.628449
12681	dm3.chrX	1,579,122 – 1,579,339		17437	1,579,212 – 1,579,339	-	9	129	77.40	-1.29	0.65	0.890437
12682	dm3.chrX	1,584,019 – 1,584,128	- - - - - - - -	17438	1,584,019 – 1,584,128	+	9	128	60.12	-1.51	0.36	0.955696
12682	dm3.chrX	1,584,019 – 1,584,128	- - - - - - - -	17439	1,584,019 – 1,584,128	-	9	128	60.12	-1.37	0.40	0.968518
12683	dm3.chrX	1,585,684 – 1,585,785	- - - intron="intron;ID=intron_FBgn0023531:19_FBgn0023531:18;Name=CG32809-in;Parent=FBtr0089815,FBtr0089814;parent_type=mRNA" - - - -	17440	1,585,684 – 1,585,785	+	5	119	76.86	-2.62	0.68	0.990993
12684	dm3.chrX	1,586,442 – 1,586,642	- - - - - - - -	17441	1,586,442 – 1,586,567	+	5	132	90.83	-1.79	0.79	0.548499
				17442	1,586,442 – 1,586,567	-	5	132	90.83	-1.73	0.88	0.830029
				17443	1,586,567 – 1,586,642	-	9	76	85.69	-2.43	0.62	0.901186
12685	dm3.chrX	1,590,285 – 1,590,368	- - - - - - - -	17444	1,590,285 – 1,590,368	+	6	84	80.72	-1.52	0.64	0.654534
12685	dm3.chrX	1,590,285 – 1,590,368	- - - - - - - -	17445	1,590,285 – 1,590,368	-	6	84	80.72	-1.79	0.68	0.895976
12686	dm3.chrX	1,596,127 – 1,596,180	- - - - - - - -	17446	1,596,127 – 1,596,180	-	7	54	78.55	-1.77	0.72	0.955284
12687	dm3.chrX	1,596,888 – 1,596,946	- - - - - - - -	17447	1,596,888 – 1,596,946	+	5	58	100.00	-1.36	1.00	0.838769
12687	dm3.chrX	1,596,888 – 1,596,946	- - - - - - - -	17448	1,596,888 – 1,596,946	-	5	58	100.00	-0.90	1.00	0.557591
12688	dm3.chrX	1,605,277 – 1,605,340	- - - - - - - -	17449	1,605,277 – 1,605,340	-	4	63	84.08	-2.66	0.63	0.938085
12689	dm3.chrX	1,605,968 – 1,606,025	- - - - - - - -	17450	1,605,968 – 1,606,025	-	5	57	96.49	-1.59	0.89	0.596621
12690	dm3.chrX	1,606,091 – 1,606,217	- - - - - - - -	17451	1,606,091 – 1,606,183	-	5	109	83.35	-2.95	0.63	0.977875
				17452	1,606,118 – 1,606,216	+	5	109	85.06	-2.09	0.71	0.826505
				17453	1,606,118 – 1,606,216	-	5	109	85.06	-2.78	0.74	0.983851
				17454	1,606,127 – 1,606,217	-	5	101	85.06	-2.38	0.71	0.926997
12691	dm3.chrX	1,614,399 – 1,614,488	- - - - - - - -	17455	1,614,399 – 1,614,488	+	7	105	75.67	-1.29	0.58	0.613407
12692	dm3.chrX	1,621,372 – 1,621,475	- - - - - - - -	17456	1,621,372 – 1,621,475	-	3	120	75.22	-2.36	0.49	0.686755
12693	dm3.chrX	1,628,037 – 1,628,135	- - - - - - - -	17457	1,628,037 – 1,628,135	-	7	118	74.75	-2.10	0.38	0.510658
12694	dm3.chrX	1,629,215 – 1,629,309	- - - - - - - -	17458	1,629,215 – 1,629,309	+	3	94	95.68	-2.07	0.95	0.952570
12694	dm3.chrX	1,629,215 – 1,629,309	- - - - - - - -	17459	1,629,215 – 1,629,309	-	3	94	95.68	-2.08	0.96	0.961615
12695	dm3.chrX	1,631,029 – 1,631,110	- - - - - - - -	17460	1,631,029 – 1,631,110	-	3	96	58.61	-2.25	0.35	0.846526
12696	dm3.chrX	1,638,278 – 1,638,343	- - - - - - - -	17461	1,638,278 – 1,638,343	+	5	65	63.85	-0.54	0.50	0.580739
12696	dm3.chrX	1,638,278 – 1,638,343	- - - - - - - -	17462	1,638,278 – 1,638,343	-	5	65	63.85	-0.99	0.40	0.518681
12697	dm3.chrX	1,639,812 – 1,639,877	- - - - - - - -	17463	1,639,812 – 1,639,877	+	3	65	57.95	-0.97	0.77	0.973565
12697	dm3.chrX	1,639,812 – 1,639,877	- - - - - - - -	17464	1,639,812 – 1,639,877	-	3	65	57.95	-1.30	0.55	0.946643
12698	dm3.chrX	1,641,454 – 1,641,556	- - - intron="intron;ID=intron_FBgn0025391:4_FBgn0025391:3;Name=Scgdelta-in;Parent=FBtr0070277,FBtr0302028,FBtr0302174,FBtr0302175;parent_type=mRNA" - - - -	17465	1,641,454 – 1,641,556	+	8	108	80.03	-2.53	0.39	0.612015
12699	dm3.chrX	1,642,605 – 1,642,721	- - - intron="intron;ID=intron_FBgn0025391:5_FBgn0025391:4;Name=Scgdelta-in;Parent=FBtr0070277,FBtr0302028,FBtr0302174,FBtr0302175;parent_type=mRNA" - - - -	17466	1,642,605 – 1,642,721	-	5	122	90.13	-1.28	0.87	0.505590
12700	dm3.chrX	1,649,554 – 1,649,620	- - - - - - - -	17467	1,649,554 – 1,649,620	+	4	66	74.61	-1.23	0.74	0.767961
12701	dm3.chrX	1,655,176 – 1,655,272	- - - - - - - -	17468	1,655,176 – 1,655,272	-	12	114	66.93	-1.63	0.30	0.549586
12702	dm3.chrX	1,655,833 – 1,655,925	- - - - - - - -	17469	1,655,833 – 1,655,925	+	7	102	67.01	-1.52	0.41	0.734892
12703	dm3.chrX	1,658,580 – 1,658,682	- - - - - - - -	17470	1,658,580 – 1,658,682	+	7	120	84.69	-2.11	0.64	0.756689
12704	dm3.chrX	1,665,526 – 1,665,622	- - - - - - - -	17471	1,665,526 – 1,665,622	-	3	96	96.53	-2.12	0.93	0.936945
12705	dm3.chrX	1,667,646 – 1,667,757	- - - - - - - -	17472	1,667,646 – 1,667,757	+	7	122	58.61	-2.57	0.40	0.999524
12706	dm3.chrX	1,672,738 – 1,672,828	- - - intron="intron;ID=intron_FBgn0026086:6_FBgn0026086:7;Name=Adar-in;Parent=FBtr0070299,FBtr0070300,FBtr0100557,FBtr0305497,FBtr0305498;parent_type=mRNA" - - - -	17473	1,672,738 – 1,672,828	+	3	92	76.95	-2.68	0.76	0.991501
12706	dm3.chrX	1,672,738 – 1,672,828		17474	1,672,738 – 1,672,828	-	3	92	76.95	-2.05	0.75	0.941688
12707	dm3.chrX	1,675,802 – 1,675,880	- - CDS="CDS;ID=CDS_FBgn0026086:15_955;Name=Adar-cds;Parent=FBtr0305499;parent_type=mRNA" - - - - -	17475	1,675,802 – 1,675,880	-	15	78	88.39	-1.87	0.74	0.852677
12708	dm3.chrX	1,680,602 – 1,680,693	- - - - - - - -	17476	1,680,602 – 1,680,693	-	6	92	77.24	-1.53	0.65	0.836209
12709	dm3.chrX	1,682,883 – 1,682,986	FBnoncoding="pre_miRNA;ID=FBtr0304184;Name=mir-981-RM;Parent=FBgn0262178;Alias=CR42885-RM;Dbxref=FlyBase_Annotation_IDs:CR42885-RM,miRBase:MI0005838" - - - - - - "mirBase_v16=dsi-mir-981\|2.8e-54"	17477	1,682,883 – 1,682,986	-	12	112	82.96	-4.93	0.79	0.999634
12710	dm3.chrX	1,688,939 – 1,689,031	- - - - - - - -	17478	1,688,939 – 1,689,031	+	3	107	74.01	-1.63	0.62	0.548073
12711	dm3.chrX	1,689,360 – 1,689,456	- - - - - - - -	17479	1,689,360 – 1,689,456	+	4	101	81.74	-1.56	0.71	0.566813
12712	dm3.chrX	1,693,260 – 1,693,366	- - - - - - - -	17480	1,693,260 – 1,693,366	-	8	109	81.01	-2.45	0.57	0.953462
12713	dm3.chrX	1,697,523 – 1,697,604	- - - - - - - -	17481	1,697,523 – 1,697,604	-	5	82	63.90	-2.58	0.34	0.959164
12714	dm3.chrX	1,698,216 – 1,698,268	- - - - - - - -	17482	1,698,216 – 1,698,268	-	6	57	93.27	-2.07	0.94	0.963489
12715	dm3.chrX	1,703,100 – 1,703,193	- - - - - - - -	17483	1,703,100 – 1,703,193	+	5	98	60.33	-1.46	0.38	0.753715
12716	dm3.chrX	1,703,227 – 1,703,319	- - - - - - - -	17484	1,703,227 – 1,703,319	+	5	96	65.54	-1.58	0.56	0.986252
12716	dm3.chrX	1,703,227 – 1,703,319	- - - - - - - -	17485	1,703,227 – 1,703,319	-	5	96	65.54	-0.90	0.52	0.764989
12717	dm3.chrX	1,707,670 – 1,707,827	- - - - - - - -	17486	1,707,670 – 1,707,739	-	4	75	86.90	-2.42	0.71	0.878509
12717	dm3.chrX	1,707,670 – 1,707,827	- - - - - - - -	17487	1,707,739 – 1,707,827	+	6	96	80.53	-2.29	0.51	0.806332
12718	dm3.chrX	1,710,783 – 1,710,858	- - - - - - - -	17488	1,710,783 – 1,710,858	+	5	75	75.47	-2.59	0.59	0.993439
12718	dm3.chrX	1,710,783 – 1,710,858	- - - - - - - -	17489	1,710,783 – 1,710,858	-	5	75	75.47	-1.98	0.47	0.774364
12719	dm3.chrX	1,724,381 – 1,724,471	- - - intron="intron;ID=intron_FBgn0261548:1_FBgn0261548:8;Name=CG42666-in;Parent=FBtr0302658;parent_type=mRNA" - - - -	17490	1,724,381 – 1,724,471	+	6	110	66.95	-1.38	0.42	0.716804
12720	dm3.chrX	1,725,539 – 1,725,597	- - - intron="intron;ID=intron_FBgn0261548:1_FBgn0261548:8;Name=CG42666-in;Parent=FBtr0302658;parent_type=mRNA" - - - -	17491	1,725,539 – 1,725,597	+	9	61	87.35	-1.35	0.85	0.740010
12721	dm3.chrX	1,726,029 – 1,726,130	- - - intron="intron;ID=intron_FBgn0261548:1_FBgn0261548:8;Name=CG42666-in;Parent=FBtr0302658;parent_type=mRNA" - - - -	17492	1,726,029 – 1,726,130	-	8	113	72.64	-2.36	0.51	0.989816
12722	dm3.chrX	1,726,225 – 1,726,322	- - - intron="intron;ID=intron_FBgn0261548:2_FBgn0261548:8;Name=CG42666-in;Parent=FBtr0302654;parent_type=mRNA" - - - -	17493	1,726,225 – 1,726,322	+	5	120	79.68	-2.85	0.46	0.884400
12723	dm3.chrX	1,730,410 – 1,730,510	- - - intron="intron;ID=intron_FBgn0261548:2_FBgn0261548:8;Name=CG42666-in;Parent=FBtr0302654;parent_type=mRNA" - - - -	17494	1,730,410 – 1,730,510	+	7	120	77.25	-3.34	0.53	0.996174
12723	dm3.chrX	1,730,410 – 1,730,510		17495	1,730,410 – 1,730,510	-	7	120	77.25	-2.14	0.50	0.754400
12724	dm3.chrX	1,737,325 – 1,737,415	- - - intron="intron;ID=intron_FBgn0261548:5_FBgn0261548:7;Name=CG42666-in;Parent=FBtr0302656;parent_type=mRNA" - - - -	17496	1,737,325 – 1,737,415	+	9	105	69.41	-3.02	0.20	0.851361
12725	dm3.chrX	1,751,068 – 1,751,124	- - - - - - - -	17497	1,751,068 – 1,751,124	-	3	59	82.49	-1.04	0.90	0.635139
12726	dm3.chrX	1,774,509 – 1,774,561	- - - - - - - -	17498	1,774,509 – 1,774,561	+	6	58	72.22	-1.49	0.47	0.541104
12726	dm3.chrX	1,774,509 – 1,774,561	- - - - - - - -	17499	1,774,509 – 1,774,561	-	6	58	72.22	-1.89	0.59	0.970141
12727	dm3.chrX	1,787,263 – 1,787,358	- - - intron="intron;ID=intron_CG11579:6_CG11579:7;Name=arm-in;Parent=FBtr0089991,FBtr0089992,FBtr0089989,FBtr0089988;parent_type=mRNA" - - - -	17500	1,787,263 – 1,787,358	-	4	96	96.34	-1.45	0.90	0.524157
12728	dm3.chrX	1,792,609 – 1,792,726	- - - intron="intron;ID=intron_CG11579:2_CG11579:3;Name=arm-in;Parent=FBtr0089990,FBtr0089991,FBtr0089992,FBtr0089989,FBtr0089988;parent_type=mRNA" - - - -	17501	1,792,609 – 1,792,726	-	5	120	92.81	-1.76	0.81	0.515447
12729	dm3.chrX	1,794,528 – 1,794,618	- - - - - - - -	17502	1,794,528 – 1,794,618	+	12	114	57.19	-1.39	0.33	0.879106
12730	dm3.chrX	1,795,561 – 1,795,676	- - CDS="CDS;ID=CDS_FBgn0052803:5_1031;Name=CG32803-cds;Parent=FBtr0070356;parent_type=mRNA" - - - - -	17503	1,795,561 – 1,795,676	-	7	116	67.82	-0.70	0.53	0.704833
12731	dm3.chrX	1,795,716 – 1,795,836	- - CDS="CDS;ID=CDS_FBgn0052803:6_1031;Name=CG32803-cds;Parent=FBtr0070356;parent_type=mRNA" intron="intron;ID=intron_FBgn0052803:6_FBgn0052803:5;Name=CG32803-in;Parent=FBtr0070356;parent_type=mRNA" - - - -	17504	1,795,716 – 1,795,836	+	6	121	72.15	-1.92	0.52	0.965966
12732	dm3.chrX	1,801,978 – 1,802,074	- - - intron="intron;ID=intron_FBgn0023511:10_FBgn0023511:6;Name=Edem1-in;Parent=FBtr0070352;parent_type=mRNA" - - - -	17505	1,801,978 – 1,802,074	-	6	117	72.17	-1.53	0.50	0.636353
12733	dm3.chrX	1,822,073 – 1,822,188	- - - intron="intron;ID=intron_CG11596:7_CG11596:2;Name=CG11596-in;Parent=FBtr0070319;parent_type=mRNA" - - - -	17506	1,822,073 – 1,822,188	+	6	120	69.79	-1.52	0.50	0.891697
12733	dm3.chrX	1,822,073 – 1,822,188		17507	1,822,073 – 1,822,188	-	6	120	69.79	-1.60	0.47	0.868866
12734	dm3.chrX	1,831,627 – 1,831,681	- - - - - - - -	17508	1,831,627 – 1,831,681	+	3	55	70.73	-2.13	0.58	0.930379
12734	dm3.chrX	1,831,627 – 1,831,681	- - - - - - - -	17509	1,831,627 – 1,831,681	-	3	55	70.73	-1.95	0.53	0.768757
12735	dm3.chrX	1,835,366 – 1,835,480	- - - - - - - -	17510	1,835,366 – 1,835,480	-	8	114	68.36	-1.62	0.32	0.719464
12736	dm3.chrX	1,838,216 – 1,838,309	- - - intron="intron;ID=intron_FBgn0026087:1_FBgn0026087:2;Name=CG3600-in;Parent=FBtr0070322,FBtr0299592,FBtr0299593;parent_type=mRNA" - - - -	17511	1,838,216 – 1,838,309	+	5	95	92.22	-2.25	0.82	0.892067
12737	dm3.chrX	1,862,740 – 1,862,844	- - - intron="intron;ID=intron_FBgn0026087:3_FBgn0026087:4;Name=CG3600-in;Parent=FBtr0070322,FBtr0299592,FBtr0299593;parent_type=mRNA" - - - -	17512	1,862,740 – 1,862,844	-	6	110	64.26	-0.99	0.51	0.891784
12738	dm3.chrX	1,872,418 – 1,872,514	- - - intron="intron;ID=intron_FBgn0026087:4_FBgn0026087:5;Name=CG3600-in;Parent=FBtr0070322,FBtr0299592,FBtr0299593;parent_type=mRNA" - - - -	17513	1,872,418 – 1,872,514	-	3	120	79.17	-1.59	0.80	0.821298
12739	dm3.chrX	1,875,348 – 1,875,468	- - - intron="intron;ID=intron_FBgn0026087:4_FBgn0026087:5;Name=CG3600-in;Parent=FBtr0070322,FBtr0299592,FBtr0299593;parent_type=mRNA" - - - -	17514	1,875,348 – 1,875,468	-	3	120	80.83	-1.61	0.78	0.732016
12740	dm3.chrX	1,876,931 – 1,877,023	- - - intron="intron;ID=intron_FBgn0026087:4_FBgn0026087:5;Name=CG3600-in;Parent=FBtr0070322,FBtr0299592,FBtr0299593;parent_type=mRNA" - - - -	17515	1,876,931 – 1,877,023	+	3	106	66.77	-1.70	0.57	0.880893
12741	dm3.chrX	1,877,502 – 1,877,610	- - - intron="intron;ID=intron_FBgn0026087:4_FBgn0026087:5;Name=CG3600-in;Parent=FBtr0070322,FBtr0299592,FBtr0299593;parent_type=mRNA" - - - -	17516	1,877,502 – 1,877,610	-	3	118	86.80	-1.43	0.86	0.620510
12742	dm3.chrX	1,880,976 – 1,881,103	- - - intron="intron;ID=intron_FBgn0026087:5_FBgn0026087:6;Name=CG3600-in;Parent=FBtr0070322;parent_type=mRNA" - - - -	17517	1,880,976 – 1,881,103	+	4	134	72.20	-1.57	0.50	0.505292
12743	dm3.chrX	1,920,400 – 1,920,520	- - CDS="CDS;ID=CDS_FBgn0000667:2_1004;Name=Actn-cds;Parent=FBtr0070345,FBtr0070343,FBtr0070344;parent_type=mRNA" - - - - -	17518	1,920,400 – 1,920,520	-	15	121	78.13	-1.80	0.38	0.628480
12744	dm3.chrX	1,923,245 – 1,923,351	- - - intron="intron;ID=intron_FBgn0000667:9_FBgn0000667:6;Name=Actn-in;Parent=FBtr0070344;parent_type=mRNA" - - - -	17519	1,923,245 – 1,923,351	+	3	120	74.57	-2.07	0.76	0.968337
12745	dm3.chrX	1,926,117 – 1,926,262	- - - intron="intron;ID=intron_FBgn0000667:11_FBgn0000667:10;Name=Actn-in;Parent=FBtr0070345,FBtr0070343,FBtr0070344,FBtr0303048,FBtr0303049;parent_type=mRNA" - - - -	17520	1,926,117 – 1,926,222	+	5	105	94.57	-1.38	0.92	0.663332
12745	dm3.chrX	1,926,117 – 1,926,262		17521	1,926,142 – 1,926,262	+	5	120	89.00	-2.12	0.88	0.959757
12746	dm3.chrX	1,927,814 – 1,927,950	- - - intron="intron;ID=intron_FBgn0000667:11_FBgn0000667:10;Name=Actn-in;Parent=FBtr0070345,FBtr0070343,FBtr0070344,FBtr0303048,FBtr0303049;parent_type=mRNA" - - - -	17522	1,927,814 – 1,927,950	-	6	145	75.14	-1.85	0.54	0.900816
12747	dm3.chrX	1,931,455 – 1,931,553	- - - - - - - -	17523	1,931,455 – 1,931,553	+	9	108	77.56	-2.09	0.39	0.585435
12748	dm3.chrX	1,954,239 – 1,954,350	- - CDS="CDS;ID=CDS_FBgn0025625:8_981;Name=CG4290-cds;Parent=FBtr0070340;parent_type=mRNA" - - - - -	17524	1,954,239 – 1,954,350	-	15	111	77.92	-2.30	0.44	0.975551
12749	dm3.chrX	1,955,333 – 1,955,437	- - - intron="intron;ID=intron_FBgn0025625:9_FBgn0025625:8;Name=CG4290-in;Parent=FBtr0070340;parent_type=mRNA" - - - -	17525	1,955,333 – 1,955,437	-	6	111	80.21	-2.23	0.61	0.936693
12750	dm3.chrX	1,955,989 – 1,956,093	- - - - - - - -	17526	1,955,989 – 1,956,093	+	6	120	77.24	-1.74	0.54	0.603990
12751	dm3.chrX	1,956,445 – 1,956,570	- - - - - - - -	17527	1,956,445 – 1,956,544	-	7	117	64.75	-1.68	0.49	0.969520
				17528	1,956,474 – 1,956,570	-	7	120	65.24	-1.37	0.45	0.712548
				17529	1,956,474 – 1,956,570	-	7	120	65.44	-1.43	0.45	0.742894
12752	dm3.chrX	1,964,866 – 1,964,968	- - - - - - - -	17530	1,964,866 – 1,964,968	-	3	102	94.12	-1.82	0.88	0.757656
12753	dm3.chrX	1,966,782 – 1,966,902	- - - intron="intron;ID=intron_FBgn0025630:1_FBgn0025630:2;Name=CG4061-in;Parent=FBtr0070330;parent_type=mRNA" - - - -	17531	1,966,782 – 1,966,902	-	5	120	87.83	-2.39	0.65	0.783145
12754	dm3.chrX	1,967,503 – 1,967,608	- - - - - - - -	17532	1,967,503 – 1,967,608	+	5	120	75.88	-1.80	0.54	0.630656
12755	dm3.chrX	1,977,199 – 1,977,264	- - - intron="intron;ID=intron_CG3981:7_CG3981:2;Name=Unc-76-in;Parent=FBtr0070377;parent_type=mRNA" - - - -	17533	1,977,199 – 1,977,264	+	5	67	69.18	-1.59	0.49	0.881405
12756	dm3.chrX	1,979,134 – 1,979,216	- - - intron="intron;ID=intron_CG3981:7_CG3981:2;Name=Unc-76-in;Parent=FBtr0070377;parent_type=mRNA" - - - -	17534	1,979,134 – 1,979,216	+	5	86	80.89	-2.69	0.38	0.562523
12757	dm3.chrX	1,984,516 – 1,984,636	- - - intron="intron;ID=intron_CG3981:7_CG3981:2;Name=Unc-76-in;Parent=FBtr0070377;parent_type=mRNA" - - - -	17535	1,984,516 – 1,984,636	+	6	132	71.45	-1.06	0.55	0.618156
12758	dm3.chrX	1,992,161 – 1,992,213	- - - intron="intron;ID=intron_CG3954:3_CG3954:4;Name=csw-in;Parent=FBtr0070378;parent_type=mRNA" - - - -	17536	1,992,161 – 1,992,213	+	6	54	74.68	-1.49	0.62	0.909792
12758	dm3.chrX	1,992,161 – 1,992,213		17537	1,992,161 – 1,992,213	-	6	54	74.68	-2.03	0.50	0.932457
12759	dm3.chrX	1,992,627 – 1,992,867	- - - intron="intron;ID=intron_CG3954:3_CG3954:4;Name=csw-in;Parent=FBtr0070378;parent_type=mRNA" - - - -	17538	1,992,627 – 1,992,747	+	3	120	94.41	-1.71	0.85	0.525572
12759	dm3.chrX	1,992,627 – 1,992,867		17539	1,992,747 – 1,992,867	-	3	120	96.67	-1.19	0.98	0.731040
12760	dm3.chrX	1,993,706 – 1,993,866	- - - intron="intron;ID=intron_CG3954:3_CG3954:4;Name=csw-in;Parent=FBtr0070378;parent_type=mRNA" - - - -	17540	1,993,706 – 1,993,826	-	5	120	85.50	-1.74	0.72	0.639990
12760	dm3.chrX	1,993,706 – 1,993,866		17541	1,993,746 – 1,993,866	-	5	120	93.50	-2.05	0.81	0.730026
12761	dm3.chrX	1,995,998 – 1,996,048	FBnoncoding="snoRNA;ID=FBtr0114319;Name=snoRNA:Me18S-C1024-RA;Parent=FBgn0086043;Dbxref=FlyBase_Annotation_IDs:CR34672-RA,REFSEQ:NR_003726;score_text=Weakly" - - intron="intron;ID=intron_CG3954:3_CG3954:4;Name=csw-in;Parent=FBtr0070378;parent_type=mRNA" - - - -	17542	1,995,998 – 1,996,048	-	5	50	92.00	-1.80	0.85	0.761502
12762	dm3.chrX	2,007,916 – 2,008,055	- - - - - - - -	17543	2,007,916 – 2,008,055	-	5	153	69.97	-2.00	0.51	0.928349
12763	dm3.chrX	2,016,234 – 2,016,332	- - - - - - - -	17544	2,016,234 – 2,016,332	-	6	118	73.41	-1.85	0.43	0.517532
12764	dm3.chrX	2,019,372 – 2,019,471	- - - - - - - -	17545	2,019,372 – 2,019,471	-	4	111	75.56	-1.96	0.57	0.813052
12765	dm3.chrX	2,028,637 – 2,028,749	- - - intron="intron;ID=intron_FBgn0004861:5_FBgn0004861:4;Name=ph-p-in;Parent=FBtr0070432;parent_type=mRNA" - - - -	17546	2,028,637 – 2,028,749	+	5	120	95.06	-1.13	0.96	0.650245
12766	dm3.chrX	2,034,691 – 2,034,791	- - - - - - - -	17547	2,034,691 – 2,034,791	-	7	110	66.44	-1.16	0.43	0.755750
12767	dm3.chrX	2,035,346 – 2,035,454	- - - - - - - -	17548	2,035,346 – 2,035,442	-	5	102	76.80	-2.20	0.67	0.960311
12767	dm3.chrX	2,035,346 – 2,035,454	- - - - - - - -	17549	2,035,356 – 2,035,454	-	4	102	75.14	-2.56	0.71	0.990939
12768	dm3.chrX	2,056,714 – 2,056,815	- - - - - - - -	17550	2,056,714 – 2,056,815	+	4	120	83.41	-1.45	0.78	0.535167
12769	dm3.chrX	2,058,091 – 2,058,221	- - - - - - - -	17551	2,058,091 – 2,058,203	+	4	118	89.18	-0.98	0.97	0.727688
				17552	2,058,091 – 2,058,203	-	4	118	89.18	-1.42	0.86	0.587981
				17553	2,058,124 – 2,058,221	+	4	121	84.78	-0.98	0.97	0.795434
				17554	2,058,124 – 2,058,221	-	4	121	84.78	-2.21	0.87	0.972679
12770	dm3.chrX	2,074,891 – 2,074,949	- - - - - - - -	17555	2,074,891 – 2,074,949	-	7	58	63.55	-1.40	0.44	0.978555
12771	dm3.chrX	2,076,621 – 2,076,679	- - - - - - - -	17556	2,076,621 – 2,076,679	-	5	58	86.90	-1.55	0.82	0.699846
12772	dm3.chrX	2,089,124 – 2,089,229	- - - intron="intron;ID=intron_CG3456:1_CG3456:2;Name=Mct1-in;Parent=FBtr0070393;parent_type=mRNA" - - - -	17557	2,089,124 – 2,089,229	+	5	122	72.25	-2.22	0.67	0.992803
12772	dm3.chrX	2,089,124 – 2,089,229		17558	2,089,124 – 2,089,229	-	5	122	72.25	-1.28	0.70	0.893460
12773	dm3.chrX	2,089,997 – 2,090,112	- - - intron="intron;ID=intron_CG3456:1_CG3456:2;Name=Mct1-in;Parent=FBtr0070393;parent_type=mRNA" - - - -	17559	2,089,997 – 2,090,112	+	3	115	89.28	-2.44	0.84	0.955761
12774	dm3.chrX	2,093,075 – 2,093,135	- - - intron="intron;ID=intron_CG3456:2_CG3456:3;Name=Mct1-in;Parent=FBtr0070393;parent_type=mRNA" - - - -	17560	2,093,075 – 2,093,135	+	4	61	68.87	-1.00	0.69	0.833212
12775	dm3.chrX	2,101,144 – 2,101,225	- - - intron="intron;ID=intron_CG33548:3_CG33548:2;Name=msta-in;Parent=FBtr0070422;parent_type=mRNA" - - - -	17561	2,101,144 – 2,101,225	+	5	87	86.56	-2.80	0.57	0.861549
12775	dm3.chrX	2,101,144 – 2,101,225		17562	2,101,144 – 2,101,225	-	5	87	86.56	-2.96	0.63	0.957675
12776	dm3.chrX	2,112,658 – 2,112,763	- - - intron="intron;ID=intron_CG3299:2_CG3299:3;Name=Vinc-in;Parent=FBtr0070420;parent_type=mRNA" - - - -	17563	2,112,658 – 2,112,763	+	6	120	84.85	-2.20	0.65	0.821010
12777	dm3.chrX	2,116,829 – 2,116,932	- - - - - - - -	17564	2,116,829 – 2,116,932	+	8	117	75.61	-2.22	0.49	0.917672
12778	dm3.chrX	2,119,970 – 2,120,090	- - CDS="CDS;ID=CDS_CG3443:2_911;Name=pcx-cds;Parent=FBtr0070395;parent_type=mRNA" - - - - -	17565	2,119,970 – 2,120,090	+	14	120	75.13	-2.52	0.22	0.607629
12779	dm3.chrX	2,122,958 – 2,123,059	- - CDS="CDS;ID=CDS_CG3443:4_911;Name=pcx-cds;Parent=FBtr0070395;parent_type=mRNA" - - - - -	17566	2,122,958 – 2,123,059	+	12	120	81.49	-1.22	0.69	0.564829
12780	dm3.chrX	2,136,747 – 2,136,837	- - CDS="CDS;ID=CDS_CG3218:1_890;Name=fs(1)K10-cds;Parent=FBtr0070396;parent_type=mRNA" - - - - -	17567	2,136,747 – 2,136,837	-	3	90	57.14	-1.67	0.60	0.985376
12781	dm3.chrX	2,137,675 – 2,137,787	- - - intron="intron;ID=intron_CG3218:1_CG3218:2;Name=fs(1)K10-in;Parent=FBtr0070396;parent_type=mRNA" - - - -	17568	2,137,675 – 2,137,787	+	4	120	82.09	-1.72	0.78	0.827037
12781	dm3.chrX	2,137,675 – 2,137,787		17569	2,137,675 – 2,137,787	-	4	120	82.09	-1.46	0.86	0.849769
12782	dm3.chrX	2,143,591 – 2,143,711	- - CDS="CDS;ID=CDS_FBgn0000377:1_1030;Name=crn-cds;Parent=FBtr0070418;parent_type=mRNA" - - - - -	17570	2,143,591 – 2,143,711	-	15	120	81.85	-1.58	0.56	0.589700
12783	dm3.chrX	2,154,129 – 2,154,232	- - - - - - - -	17571	2,154,129 – 2,154,232	+	6	112	69.76	-2.96	0.19	0.699291
12784	dm3.chrX	2,156,437 – 2,156,567	- - - - - - - -	17572	2,156,437 – 2,156,534	+	6	115	77.02	-2.20	0.55	0.912933
12784	dm3.chrX	2,156,437 – 2,156,567	- - - - - - - -	17573	2,156,464 – 2,156,567	+	5	114	80.06	-1.70	0.81	0.925849
12785	dm3.chrX	2,159,618 – 2,159,669	- - - - - - - -	17574	2,159,618 – 2,159,669	+	3	51	98.69	-1.28	1.01	0.857367
12786	dm3.chrX	2,180,391 – 2,180,499	- - - intron="intron;ID=intron_CG2865:1_CG2865:2;Name=CG2865-in;Parent=FBtr0070408;parent_type=mRNA" - - - -	17575	2,180,391 – 2,180,499	-	4	118	70.14	-1.16	0.67	0.751143
12787	dm3.chrX	2,182,241 – 2,182,312	- - - intron="intron;ID=intron_CG2865:1_CG2865:2;Name=CG2865-in;Parent=FBtr0070408;parent_type=mRNA" - - - -	17576	2,182,241 – 2,182,312	+	4	73	52.30	-2.45	0.11	0.555393
12788	dm3.chrX	2,186,153 – 2,186,262	- - - intron="intron;ID=intron_CG2865:1_CG2865:2;Name=CG2865-in;Parent=FBtr0070408;parent_type=mRNA" - - - -	17577	2,186,153 – 2,186,262	+	5	120	86.21	-1.71	0.72	0.500000
12789	dm3.chrX	2,190,850 – 2,190,949	- - - - - - - -	17578	2,190,850 – 2,190,949	+	3	113	57.72	-2.94	0.19	0.708682
12790	dm3.chrX	2,193,915 – 2,194,020	- - - - - - - -	17579	2,193,915 – 2,194,020	-	3	105	96.82	-1.33	0.95	0.667205
12791	dm3.chrX	2,195,759 – 2,195,865	- - - - - - - -	17580	2,195,759 – 2,195,865	+	11	115	79.26	-1.62	0.53	0.699285
12792	dm3.chrX	2,196,413 – 2,196,513	- - - - - - - -	17581	2,196,413 – 2,196,513	+	6	109	85.44	-2.85	0.62	0.961551
12792	dm3.chrX	2,196,413 – 2,196,513	- - - - - - - -	17582	2,196,413 – 2,196,513	-	6	109	85.44	-2.58	0.66	0.942127
12793	dm3.chrX	2,196,627 – 2,196,723	- - - - - - - -	17583	2,196,627 – 2,196,723	+	3	100	83.00	-1.70	0.74	0.573140
12794	dm3.chrX	2,197,161 – 2,197,262	- - - - - - - -	17584	2,197,161 – 2,197,262	-	5	115	79.27	-2.94	0.60	0.989589
12795	dm3.chrX	2,213,915 – 2,214,082	- - - - - - - -	17585	2,213,915 – 2,214,009	+	4	99	85.38	-1.79	0.77	0.710309
				17586	2,213,949 – 2,214,044	+	5	100	92.39	-2.55	0.93	0.987987
				17587	2,213,975 – 2,214,082	+	5	107	86.52	-1.35	0.82	0.521521
12796	dm3.chrX	2,226,724 – 2,226,846	- - - - - - - -	17588	2,226,724 – 2,226,814	-	3	90	70.15	-1.82	0.58	0.842919
12796	dm3.chrX	2,226,724 – 2,226,846	- - - - - - - -	17589	2,226,742 – 2,226,846	-	3	106	93.67	-2.84	0.87	0.980872
12797	dm3.chrX	2,229,305 – 2,229,427	- - - - - - - -	17590	2,229,305 – 2,229,408	+	3	103	82.59	-1.22	0.86	0.589919
				17591	2,229,305 – 2,229,408	-	3	103	82.59	-1.24	0.85	0.567004
				17592	2,229,327 – 2,229,427	-	4	100	57.88	-1.71	0.35	0.879772
12798	dm3.chrX	2,244,502 – 2,244,601	- - - - - - - -	17593	2,244,502 – 2,244,601	+	6	124	68.18	-1.98	0.47	0.957862
12799	dm3.chrX	2,254,519 – 2,254,578	- - - - - - - -	17594	2,254,519 – 2,254,578	+	8	59	74.91	-1.20	0.61	0.849073
12800	dm3.chrX	2,260,802 – 2,260,986	- - - - - - - -	17595	2,260,802 – 2,260,913	+	3	114	97.08	-1.94	0.98	0.956823
				17596	2,260,802 – 2,260,913	-	3	114	97.08	-1.41	0.99	0.866074
				17597	2,260,876 – 2,260,986	+	3	120	92.78	-1.37	0.99	0.896399
12801	dm3.chrX	2,268,114 – 2,268,234	- - CDS="CDS;ID=CDS_FBgn0040390:9_980;Name=CG14047-cds;Parent=FBtr0301752;parent_type=mRNA" - - - - -	17598	2,268,114 – 2,268,234	-	12	120	85.06	-2.47	0.44	0.511355
12802	dm3.chrX	2,273,191 – 2,273,265	- - CDS="CDS;ID=CDS_FBgn0040387:1_995;Name=PsGEF-cds;Parent=FBtr0070463,FBtr0300879;parent_type=mRNA" - - - - -	17599	2,273,191 – 2,273,265	-	13	79	69.71	-0.65	0.45	0.500000
12803	dm3.chrX	2,284,700 – 2,284,781	- - - - - - - -	17600	2,284,700 – 2,284,781	-	5	101	76.27	-0.85	0.80	0.550010
12804	dm3.chrX	2,290,413 – 2,290,511	- - - - - - - -	17601	2,290,413 – 2,290,511	+	8	108	54.59	-0.86	0.43	0.938066
12805	dm3.chrX	2,307,099 – 2,307,207	- - - - - - - -	17602	2,307,099 – 2,307,207	-	5	110	59.29	-1.19	0.34	0.516151
12806	dm3.chrX	2,308,532 – 2,308,615	- - - - - - - -	17603	2,308,532 – 2,308,615	+	6	88	89.62	-1.83	0.82	0.820868
12807	dm3.chrX	2,332,526 – 2,332,701	- - - - - - - -	17604	2,332,526 – 2,332,624	+	5	98	82.81	-1.99	0.74	0.895525
12807	dm3.chrX	2,332,526 – 2,332,701	- - - - - - - -	17605	2,332,593 – 2,332,701	+	12	119	94.65	-1.86	0.89	0.866132
12808	dm3.chrX	2,338,607 – 2,338,698	- - - - - - - -	17606	2,338,607 – 2,338,698	+	5	117	74.09	-1.20	0.71	0.731353
12809	dm3.chrX	2,347,790 – 2,347,880	- - - intron="intron;ID=intron_FBgn0040388:9_FBgn0040388:8;Name=boi-in;Parent=FBtr0070457,FBtr0114528,FBtr0303886,FBtr0303887;parent_type=mRNA" - - - -	17607	2,347,790 – 2,347,880	+	6	114	66.58	-1.59	0.41	0.724867
12810	dm3.chrX	2,347,918 – 2,348,021	- - - intron="intron;ID=intron_FBgn0040388:9_FBgn0040388:8;Name=boi-in;Parent=FBtr0070457,FBtr0114528,FBtr0303886,FBtr0303887;parent_type=mRNA" - - - -	17608	2,347,918 – 2,348,021	+	6	114	74.50	-1.31	0.58	0.685137
12811	dm3.chrX	2,348,905 – 2,348,975	- - - intron="intron;ID=intron_FBgn0040388:9_FBgn0040388:8;Name=boi-in;Parent=FBtr0070457,FBtr0114528,FBtr0303886,FBtr0303887;parent_type=mRNA" - - - -	17609	2,348,905 – 2,348,975	-	3	70	95.24	-1.94	0.91	0.876034
12812	dm3.chrX	2,358,240 – 2,358,334	- - - intron="intron;ID=intron_FBgn0040388:10_FBgn0040388:9;Name=boi-in;Parent=FBtr0070457,FBtr0114528,FBtr0303886,FBtr0303887;parent_type=mRNA" - - - -	17610	2,358,240 – 2,358,334	-	5	94	79.70	-1.51	0.74	0.834700
12813	dm3.chrX	2,366,382 – 2,366,433	- - - intron="intron;ID=intron_FBgn0261451:2_FBgn0261451:1;Name=trol-in;Parent=FBtr0091965,FBtr0305158,FBtr0305160,FBtr0305161,FBtr0305162,FBtr0305163,FBtr0305164,FBtr0305165,FBtr0305166,FBtr0305167,FBtr0305168,FBtr0305169,FBtr0305170,FBtr0305171,FBtr0305172,FBtr0305173,FBtr0305174,FBtr0305175,FBtr0305176;parent_type=mRNA" - - - -	17611	2,366,382 – 2,366,433	+	5	63	68.01	-1.88	0.59	0.989780
12814	dm3.chrX	2,379,452 – 2,379,568	- - - intron="intron;ID=intron_FBgn0261451:19_FBgn0261451:18;Name=trol-in;Parent=FBtr0305158;parent_type=mRNA" - - - -	17612	2,379,452 – 2,379,555	-	5	105	89.28	-1.78	0.81	0.724009
12814	dm3.chrX	2,379,452 – 2,379,568		17613	2,379,467 – 2,379,568	+	5	107	89.47	-1.75	0.78	0.552120
12815	dm3.chrX	2,392,188 – 2,392,289	- - - intron="intron;ID=intron_FBgn0261451:38_FBgn0261451:37;Name=trol-in;Parent=FBtr0091965,FBtr0305158,FBtr0305159,FBtr0305160,FBtr0305161,FBtr0305162,FBtr0305164,FBtr0305167,FBtr0305170,FBtr0305172,FBtr0305174,FBtr0305176;parent_type=mRNA" - - - -	17614	2,392,188 – 2,392,289	-	4	109	67.72	-1.54	0.63	0.923636
12816	dm3.chrX	2,402,894 – 2,402,952	- - - - - - - -	17615	2,402,894 – 2,402,952	+	6	67	68.13	-2.54	0.51	0.997652
12816	dm3.chrX	2,402,894 – 2,402,952	- - - - - - - -	17616	2,402,894 – 2,402,952	-	6	67	68.13	-2.48	0.26	0.738516
12817	dm3.chrX	2,417,195 – 2,417,315	- - - intron="intron;ID=intron_FBgn0261451:53_FBgn0261451:52;Name=trol-in;Parent=FBtr0305159;parent_type=mRNA" - - - -	17617	2,417,195 – 2,417,315	-	3	120	88.86	-1.99	0.88	0.918391
12818	dm3.chrX	2,425,021 – 2,425,121	- - - intron="intron;ID=intron_FBgn0261451:56_FBgn0261451:55;Name=trol-in;Parent=FBtr0305158,FBtr0305159,FBtr0305160,FBtr0305161,FBtr0305163,FBtr0305167,FBtr0305168,FBtr0305169,FBtr0305170,FBtr0305171,FBtr0305172,FBtr0305173,FBtr0305174,FBtr0305175;parent_type=mRNA" - - - -	17618	2,425,021 – 2,425,121	+	5	120	78.79	-2.07	0.62	0.847090
12819	dm3.chrX	2,428,769 – 2,428,877	- - - intron="intron;ID=intron_FBgn0261451:56_FBgn0261451:55;Name=trol-in;Parent=FBtr0305158,FBtr0305159,FBtr0305160,FBtr0305161,FBtr0305163,FBtr0305167,FBtr0305168,FBtr0305169,FBtr0305170,FBtr0305171,FBtr0305172,FBtr0305173,FBtr0305174,FBtr0305175;parent_type=mRNA" - - - -	17619	2,428,769 – 2,428,877	+	5	108	75.61	-1.45	0.80	0.932812
12820	dm3.chrX	2,430,850 – 2,430,983	- - - intron="intron;ID=intron_FBgn0261451:56_FBgn0261451:55;Name=trol-in;Parent=FBtr0305158,FBtr0305159,FBtr0305160,FBtr0305161,FBtr0305163,FBtr0305167,FBtr0305168,FBtr0305169,FBtr0305170,FBtr0305171,FBtr0305172,FBtr0305173,FBtr0305174,FBtr0305175;parent_type=mRNA" - - - -	17620	2,430,850 – 2,430,943	+	3	98	83.57	-3.21	0.77	0.994105
12820	dm3.chrX	2,430,850 – 2,430,983		17621	2,430,883 – 2,430,983	+	4	109	77.22	-2.53	0.59	0.962916
12821	dm3.chrX	2,440,347 – 2,440,433	- - - - - - - -	17622	2,440,347 – 2,440,433	-	4	99	79.31	-1.63	0.67	0.664865
12822	dm3.chrX	2,441,957 – 2,442,104	- - - - - - - -	17623	2,441,957 – 2,442,064	+	4	120	64.61	-1.97	0.42	0.923754
				17624	2,441,957 – 2,442,064	-	4	120	64.61	-2.32	0.49	0.992765
				17625	2,441,984 – 2,442,104	-	4	120	77.78	-2.15	0.67	0.949033
12823	dm3.chrX	2,463,160 – 2,463,279	- - - intron="intron;ID=intron_FBgn0260753:1_FBgn0260753:2;Name=Pdfr-in;Parent=FBtr0070436;parent_type=mRNA" - - - -	17626	2,463,160 – 2,463,279	+	6	124	58.79	-0.95	0.35	0.520542
12824	dm3.chrX	2,470,598 – 2,470,760	- - - - - - - -	17627	2,470,598 – 2,470,699	+	4	121	82.13	-1.59	0.79	0.749294
				17628	2,470,634 – 2,470,737	+	4	120	85.35	-2.24	0.84	0.963196
				17629	2,470,657 – 2,470,760	+	4	120	85.35	-2.00	0.69	0.605217
12825	dm3.chrX	2,476,152 – 2,476,251	- - - intron="intron;ID=intron_FBgn0040376:1_FBgn0040376:4;Name=CG13759-in;Parent=FBtr0302447;parent_type=mRNA" - - - -	17630	2,476,152 – 2,476,251	+	6	117	63.93	-1.82	0.36	0.878135
12826	dm3.chrX	2,485,831 – 2,485,941	- - - intron="intron;ID=intron_CG9659:1_CG9659:2;Name=egh-in;Parent=FBtr0070439;parent_type=mRNA" - - - -	17631	2,485,831 – 2,485,941	-	5	113	62.25	-1.92	0.40	0.956989
12827	dm3.chrX	2,487,300 – 2,487,433	- - - intron="intron;ID=intron_CG9659:4_CG9659:2;Name=egh-in;Parent=FBtr0070440;parent_type=mRNA" - - - -	17632	2,487,300 – 2,487,393	-	5	102	77.78	-3.10	0.69	0.997559
				17633	2,487,332 – 2,487,433	+	4	101	87.54	-2.08	0.68	0.563733
				17634	2,487,332 – 2,487,433	-	4	101	87.54	-3.15	0.74	0.988928
12828	dm3.chrX	2,489,033 – 2,489,169	- - - intron="intron;ID=intron_CG9659:4_CG9659:2;Name=egh-in;Parent=FBtr0070440;parent_type=mRNA" - - - -	17635	2,489,033 – 2,489,139	+	5	111	72.43	-2.08	0.54	0.974795
12828	dm3.chrX	2,489,033 – 2,489,169		17636	2,489,073 – 2,489,169	+	4	121	60.16	-1.69	0.43	0.883907
12829	dm3.chrX	2,489,889 – 2,490,011	- - - - - - - -	17637	2,489,889 – 2,489,999	+	5	118	83.11	-2.07	0.67	0.806378
12829	dm3.chrX	2,489,889 – 2,490,011	- - - - - - - -	17638	2,489,907 – 2,490,011	+	5	113	81.71	-2.18	0.64	0.851129
12830	dm3.chrX	2,515,968 – 2,516,064	- - - - - - - -	17639	2,515,968 – 2,516,064	+	3	97	61.89	-1.19	0.54	0.676537
12831	dm3.chrX	2,527,943 – 2,528,030	- - - - - - - -	17640	2,527,943 – 2,528,030	-	6	98	72.21	-2.03	0.48	0.923076
12832	dm3.chrX	2,529,991 – 2,530,088	- - - intron="intron;ID=intron_FBgn0003371:5_FBgn0003371:8;Name=sgg-in;Parent=FBtr0070474;parent_type=mRNA" - - - -	17641	2,529,991 – 2,530,088	-	5	114	72.54	-3.31	0.29	0.939908
12833	dm3.chrX	2,530,971 – 2,531,085	- - - intron="intron;ID=intron_FBgn0003371:5_FBgn0003371:8;Name=sgg-in;Parent=FBtr0070474;parent_type=mRNA" - - - -	17642	2,530,971 – 2,531,085	+	5	119	89.73	-1.65	0.83	0.668592
12834	dm3.chrX	2,537,090 – 2,537,206	- - - intron="intron;ID=intron_FBgn0003371:10_FBgn0003371:16;Name=sgg-in;Parent=FBtr0301966;parent_type=mRNA" - - - -	17643	2,537,090 – 2,537,206	-	6	116	73.96	-1.88	0.40	0.605151
12835	dm3.chrX	2,538,157 – 2,538,258	- - - intron="intron;ID=intron_FBgn0003371:12_FBgn0003371:23;Name=sgg-in;Parent=FBtr0070475;parent_type=mRNA" - - - -	17644	2,538,157 – 2,538,258	+	3	102	87.29	-1.04	0.91	0.500000
12836	dm3.chrX	2,545,982 – 2,546,097	- - - intron="intron;ID=intron_FBgn0003371:17_FBgn0003371:23;Name=sgg-in;Parent=FBtr0301966;parent_type=mRNA" - - - -	17645	2,545,982 – 2,546,074	-	3	92	88.19	-0.87	0.95	0.536984
12836	dm3.chrX	2,545,982 – 2,546,097		17646	2,546,002 – 2,546,097	+	5	109	67.70	-1.28	0.46	0.513384
12837	dm3.chrX	2,546,238 – 2,546,334	- - - intron="intron;ID=intron_FBgn0003371:17_FBgn0003371:23;Name=sgg-in;Parent=FBtr0301966;parent_type=mRNA" - - - -	17647	2,546,238 – 2,546,334	+	3	97	80.22	-1.98	0.63	0.500000
12838	dm3.chrX	2,549,198 – 2,549,250	- - - intron="intron;ID=intron_FBgn0003371:17_FBgn0003371:23;Name=sgg-in;Parent=FBtr0301966;parent_type=mRNA" - - - -	17648	2,549,198 – 2,549,250	-	5	53	96.18	-1.52	0.90	0.604710
12839	dm3.chrX	2,557,500 – 2,557,608	- - - intron="intron;ID=intron_FBgn0003371:18_FBgn0003371:23;Name=sgg-in;Parent=FBtr0070471;parent_type=mRNA" - - - -	17649	2,557,500 – 2,557,608	+	5	117	83.79	-2.58	0.74	0.975900
12840	dm3.chrX	2,580,801 – 2,580,895	- - - intron="intron;ID=intron_CG2647:1_CG2647:2;Name=per-in;Parent=FBtr0070477;parent_type=mRNA" - - - -	17650	2,580,801 – 2,580,895	+	3	94	96.45	-1.62	0.92	0.731874
12840	dm3.chrX	2,580,801 – 2,580,895		17651	2,580,801 – 2,580,895	-	3	94	96.45	-2.28	0.95	0.970000
12841	dm3.chrX	2,581,434 – 2,581,530	- - - intron="intron;ID=intron_CG2647:1_CG2647:2;Name=per-in;Parent=FBtr0070477;parent_type=mRNA" - - - -	17652	2,581,434 – 2,581,530	+	6	117	65.71	-0.90	0.49	0.582190
12841	dm3.chrX	2,581,434 – 2,581,530		17653	2,581,434 – 2,581,530	-	6	117	65.71	-1.83	0.64	0.996279
12842	dm3.chrX	2,586,810 – 2,586,913	- - - - - - - -	17654	2,586,810 – 2,586,902	+	4	94	53.24	-1.28	0.33	0.722000
12842	dm3.chrX	2,586,810 – 2,586,913	- - - - - - - -	17655	2,586,820 – 2,586,913	+	3	95	70.92	-2.00	0.59	0.904961
12843	dm3.chrX	2,588,050 – 2,588,140	- - - - - - - -	17656	2,588,050 – 2,588,140	+	5	108	76.26	-1.73	0.52	0.596532
12844	dm3.chrX	2,590,339 – 2,590,431	- - CDS="CDS;ID=CDS_CG2658:4_909;Name=CG2658-cds;Parent=FBtr0070502;parent_type=mRNA" - - - - -	17657	2,590,339 – 2,590,431	-	14	111	69.22	-0.75	0.50	0.617455
12845	dm3.chrX	2,597,137 – 2,597,233	- - - intron="intron;ID=intron_FBgn0024994:3_FBgn0024994:1;Name=Csat-in;Parent=FBtr0273276;parent_type=mRNA" - - - -	17658	2,597,137 – 2,597,233	+	6	99	65.87	-1.18	0.44	0.517518
12845	dm3.chrX	2,597,137 – 2,597,233		17659	2,597,137 – 2,597,233	-	6	99	65.87	-1.41	0.40	0.538821
12846	dm3.chrX	2,597,699 – 2,597,816	- - - - - - - -	17660	2,597,699 – 2,597,816	-	6	122	73.59	-1.43	0.48	0.616325
12847	dm3.chrX	2,597,910 – 2,598,087	- - - - - - - -	17661	2,597,910 – 2,598,028	-	5	120	75.67	-2.17	0.43	0.716151
				17662	2,597,948 – 2,598,068	-	5	120	82.50	-2.02	0.58	0.584584
				17663	2,597,967 – 2,598,087	+	5	120	84.33	-2.27	0.70	0.917607
				17664	2,597,967 – 2,598,087	-	5	120	84.33	-1.69	0.77	0.784800
12848	dm3.chrX	2,608,365 – 2,608,472	- - CDS="CDS;ID=CDS_CG2694:2_913;Name=CG2694-cds;Parent=FBtr0070481;parent_type=mRNA" - - - - -	17665	2,608,365 – 2,608,467	+	4	121	54.11	-0.93	0.40	0.600883
12848	dm3.chrX	2,608,365 – 2,608,472		17666	2,608,370 – 2,608,472	+	4	120	53.98	-1.17	0.39	0.769916
12849	dm3.chrX	2,623,817 – 2,623,933	- - CDS="CDS;ID=CDS_CG2711:3_891;Name=dwg-cds;Parent=FBtr0070487;parent_type=mRNA" - - - - -	17667	2,623,817 – 2,623,933	+	3	116	57.70	-0.69	0.65	0.731978
12849	dm3.chrX	2,623,817 – 2,623,933		17668	2,623,817 – 2,623,933	-	3	116	57.70	-1.04	0.49	0.500000
12850	dm3.chrX	2,632,856 – 2,632,953	- - - - - - - -	17669	2,632,856 – 2,632,953	+	6	103	64.58	-1.71	0.36	0.878447
12851	dm3.chrX	2,642,350 – 2,642,470	- - - - - - - -	17670	2,642,350 – 2,642,470	+	7	128	77.05	-2.71	0.35	0.856163
12852	dm3.chrX	2,642,621 – 2,642,722	- - - - - - - -	17671	2,642,621 – 2,642,722	+	5	101	99.01	-1.16	0.98	0.658999
12852	dm3.chrX	2,642,621 – 2,642,722	- - - - - - - -	17672	2,642,621 – 2,642,722	-	5	101	99.01	-0.98	0.98	0.522803
12853	dm3.chrX	2,655,956 – 2,656,075	- - - - - - - -	17673	2,655,956 – 2,656,075	-	5	121	72.87	-1.14	0.58	0.600564
12854	dm3.chrX	2,664,779 – 2,664,918	- - - - - - - -	17674	2,664,779 – 2,664,918	+	8	152	77.87	-1.88	0.52	0.846662
12855	dm3.chrX	2,665,543 – 2,665,642	- - - - - - - -	17675	2,665,543 – 2,665,642	-	11	119	76.79	-3.25	0.84	0.999208
12856	dm3.chrX	2,666,547 – 2,666,622	- - - - - - - -	17676	2,666,547 – 2,666,622	-	7	83	68.50	-2.13	0.36	0.870950
12857	dm3.chrX	2,699,519 – 2,699,591	- - - - - - - -	17677	2,699,519 – 2,699,591	+	8	85	84.66	-1.98	0.59	0.513150
12858	dm3.chrX	2,701,268 – 2,701,359	- - - - - - - -	17678	2,701,268 – 2,701,359	-	4	91	94.07	-0.92	1.02	0.804333
12859	dm3.chrX	2,702,228 – 2,702,345	- - - - - - - -	17679	2,702,228 – 2,702,345	+	4	118	70.23	-1.86	0.51	0.916207
12859	dm3.chrX	2,702,228 – 2,702,345	- - - - - - - -	17680	2,702,228 – 2,702,345	-	4	118	70.23	-1.56	0.47	0.632505
12860	dm3.chrX	2,725,872 – 2,725,937	- - - - - - - -	17681	2,725,872 – 2,725,937	+	3	65	56.92	-1.17	0.79	0.988137
12860	dm3.chrX	2,725,872 – 2,725,937	- - - - - - - -	17682	2,725,872 – 2,725,937	-	3	65	56.92	-1.19	0.53	0.920880
12861	dm3.chrX	2,733,469 – 2,733,583	- - - - - - - -	17683	2,733,469 – 2,733,583	-	7	117	64.80	-1.14	0.41	0.659502
12862	dm3.chrX	2,736,490 – 2,736,585	- - - - - - - -	17684	2,736,490 – 2,736,585	+	5	95	89.33	-1.32	0.85	0.500000
12863	dm3.chrX	2,749,164 – 2,749,298	- - - - - - - -	17685	2,749,164 – 2,749,281	+	7	117	81.67	-2.59	0.53	0.890752
12863	dm3.chrX	2,749,164 – 2,749,298	- - - - - - - -	17686	2,749,203 – 2,749,298	+	4	105	86.83	-3.07	0.75	0.987598
12864	dm3.chrX	2,774,339 – 2,774,435	- - - - - - - -	17687	2,774,339 – 2,774,435	-	7	119	63.71	-1.69	0.33	0.627542
12865	dm3.chrX	2,790,299 – 2,790,404	- - - - - - - -	17688	2,790,299 – 2,790,404	-	12	119	90.91	-2.11	0.71	0.607450
12866	dm3.chrX	2,812,642 – 2,812,742	- - - - - - - -	17689	2,812,642 – 2,812,742	-	5	101	89.58	-2.78	0.76	0.965245
12867	dm3.chrX	2,813,747 – 2,813,846	- - - - - - - -	17690	2,813,747 – 2,813,846	+	9	102	73.47	-1.15	0.65	0.932184
12868	dm3.chrX	2,836,032 – 2,836,129	- - CDS="CDS;ID=CDS_CG14421:2_896;Name=CG14421-cds;Parent=FBtr0070554;parent_type=mRNA" - - - - -	17691	2,836,032 – 2,836,129	-	5	104	61.70	-1.14	0.40	0.688076
12869	dm3.chrX	2,849,394 – 2,849,486	- - - intron="intron;ID=intron_CG4125:6_CG4125:7;Name=rst-in;Parent=FBtr0070562;parent_type=mRNA" - - - -	17692	2,849,394 – 2,849,486	-	3	120	75.94	-1.94	0.63	0.753249
12870	dm3.chrX	2,853,177 – 2,853,241	- - - intron="intron;ID=intron_CG4125:2_CG4125:3;Name=rst-in;Parent=FBtr0070562;parent_type=mRNA" - - - -	17693	2,853,177 – 2,853,241	-	8	77	75.04	-2.39	0.45	0.926435
12871	dm3.chrX	2,858,464 – 2,858,556	- - - intron="intron;ID=intron_CG4125:2_CG4125:3;Name=rst-in;Parent=FBtr0070562;parent_type=mRNA" - - - -	17694	2,858,464 – 2,858,556	+	3	95	54.12	-1.06	0.67	0.974541
12871	dm3.chrX	2,858,464 – 2,858,556		17695	2,858,464 – 2,858,556	-	3	95	54.12	-0.98	0.59	0.929780
12872	dm3.chrX	2,868,407 – 2,868,645	- - - intron="intron;ID=intron_FBgn0028369:1_FBgn0028369:2;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17696	2,868,407 – 2,868,525	+	5	120	93.89	-1.34	0.91	0.614542
				17697	2,868,485 – 2,868,605	+	5	120	94.25	-2.29	0.88	0.941192
				17698	2,868,485 – 2,868,605	-	5	120	94.25	-1.75	0.88	0.760386
				17699	2,868,525 – 2,868,645	+	5	120	92.58	-3.13	0.77	0.980831
12873	dm3.chrX	2,870,516 – 2,870,622	- - - intron="intron;ID=intron_FBgn0028369:1_FBgn0028369:2;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17700	2,870,516 – 2,870,622	+	6	107	81.32	-1.73	0.77	0.906894
12874	dm3.chrX	2,880,258 – 2,880,352	- - - intron="intron;ID=intron_FBgn0028369:1_FBgn0028369:2;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17701	2,880,258 – 2,880,352	+	4	99	82.87	-1.53	0.79	0.700443
12875	dm3.chrX	2,887,779 – 2,887,879	- - - intron="intron;ID=intron_FBgn0028369:1_FBgn0028369:2;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17702	2,887,779 – 2,887,879	+	11	115	80.50	-1.85	0.60	0.857396
12875	dm3.chrX	2,887,779 – 2,887,879		17703	2,887,779 – 2,887,879	-	11	115	80.50	-2.17	0.60	0.948224
12876	dm3.chrX	2,931,052 – 2,931,144	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17704	2,931,052 – 2,931,144	+	11	93	81.88	-1.64	0.61	0.789552
12877	dm3.chrX	2,932,266 – 2,932,400	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17705	2,932,266 – 2,932,400	+	6	135	85.21	-1.83	0.63	0.500000
12877	dm3.chrX	2,932,266 – 2,932,400		17706	2,932,266 – 2,932,400	-	6	135	85.21	-2.61	0.74	0.982788
12878	dm3.chrX	2,933,405 – 2,933,535	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17707	2,933,405 – 2,933,504	+	7	109	66.13	-1.88	0.29	0.700737
12878	dm3.chrX	2,933,405 – 2,933,535		17708	2,933,435 – 2,933,535	+	6	105	76.41	-1.94	0.52	0.856064
12879	dm3.chrX	2,933,805 – 2,933,877	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17709	2,933,805 – 2,933,877	+	11	72	94.49	-1.07	0.95	0.637344
12879	dm3.chrX	2,933,805 – 2,933,877		17710	2,933,805 – 2,933,877	-	11	72	94.49	-1.89	0.99	0.976742
12880	dm3.chrX	2,944,492 – 2,944,561	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17711	2,944,492 – 2,944,561	-	6	74	90.24	-1.57	0.86	0.725787
12881	dm3.chrX	2,945,217 – 2,945,267	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17712	2,945,217 – 2,945,267	+	7	50	100.00	-1.65	1.00	0.922283
12882	dm3.chrX	2,945,304 – 2,945,400	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17713	2,945,304 – 2,945,400	+	5	114	70.02	-1.00	0.84	0.925618
12883	dm3.chrX	2,947,240 – 2,947,340	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17714	2,947,240 – 2,947,340	-	9	113	89.02	-2.62	0.92	0.993653
12884	dm3.chrX	2,949,443 – 2,949,499	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17715	2,949,443 – 2,949,499	+	4	56	94.44	-2.55	0.88	0.965719
12884	dm3.chrX	2,949,443 – 2,949,499		17716	2,949,443 – 2,949,499	-	4	56	94.44	-1.90	1.12	0.996908
12885	dm3.chrX	2,959,829 – 2,959,930	- - - intron="intron;ID=intron_FBgn0028369:3_FBgn0028369:4;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17717	2,959,829 – 2,959,930	-	12	103	93.69	-2.48	0.90	0.981756
12886	dm3.chrX	2,986,094 – 2,986,163	- - - intron="intron;ID=intron_FBgn0028369:4_FBgn0028369:5;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17718	2,986,094 – 2,986,163	+	5	79	69.96	-2.18	0.48	0.938783
12887	dm3.chrX	2,997,227 – 2,997,341	- - - intron="intron;ID=intron_FBgn0028369:5_FBgn0028369:7;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17719	2,997,227 – 2,997,334	+	6	119	65.90	-1.37	0.43	0.779892
12887	dm3.chrX	2,997,227 – 2,997,341		17720	2,997,234 – 2,997,341	+	5	115	67.33	-1.22	0.60	0.933403
12888	dm3.chrX	3,008,875 – 3,008,938	- - - intron="intron;ID=intron_FBgn0028369:5_FBgn0028369:7;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17721	3,008,875 – 3,008,938	+	6	65	80.17	-1.84	0.59	0.801965
12888	dm3.chrX	3,008,875 – 3,008,938		17722	3,008,875 – 3,008,938	-	6	65	80.17	-1.85	0.68	0.927731
12889	dm3.chrX	3,022,661 – 3,022,740	- - - intron="intron;ID=intron_FBgn0028369:5_FBgn0028369:7;Name=kirre-in;Parent=FBtr0070559;parent_type=mRNA" - - - -	17723	3,022,661 – 3,022,740	-	5	88	71.98	-1.14	0.59	0.709471
12890	dm3.chrX	3,035,526 – 3,035,629	- - - intron="intron;ID=intron_FBgn0004647:1_FBgn0004647:2;Name=N-in;Parent=FBtr0070507,FBtr0304659;parent_type=mRNA" - - - -	17724	3,035,526 – 3,035,622	-	6	97	80.55	-1.45	0.70	0.750768
12890	dm3.chrX	3,035,526 – 3,035,629		17725	3,035,533 – 3,035,629	-	6	119	74.73	-1.35	0.58	0.554133
12891	dm3.chrX	3,037,878 – 3,037,973	- - - intron="intron;ID=intron_FBgn0004647:1_FBgn0004647:2;Name=N-in;Parent=FBtr0070507,FBtr0304659;parent_type=mRNA" - - - -	17726	3,037,878 – 3,037,973	-	3	95	83.94	-2.94	0.48	0.672248
12892	dm3.chrX	3,041,091 – 3,041,167	- - - intron="intron;ID=intron_FBgn0004647:1_FBgn0004647:2;Name=N-in;Parent=FBtr0070507,FBtr0304659;parent_type=mRNA" - - - -	17727	3,041,091 – 3,041,167	+	7	80	73.85	-1.62	0.51	0.788479
12893	dm3.chrX	3,047,653 – 3,047,745	- - - intron="intron;ID=intron_FBgn0004647:2_FBgn0004647:3;Name=N-in;Parent=FBtr0070507,FBtr0304659;parent_type=mRNA" - - - -	17728	3,047,653 – 3,047,745	+	8	95	65.06	-1.46	0.41	0.911605
12893	dm3.chrX	3,047,653 – 3,047,745		17729	3,047,653 – 3,047,745	-	8	95	65.06	-1.39	0.43	0.922691
12894	dm3.chrX	3,051,613 – 3,051,703	- - - intron="intron;ID=intron_FBgn0004647:4_FBgn0004647:5;Name=N-in;Parent=FBtr0070507,FBtr0304659;parent_type=mRNA" - - - -	17730	3,051,613 – 3,051,703	-	8	103	81.01	-2.66	0.58	0.973607
12895	dm3.chrX	3,054,706 – 3,054,808	- - - intron="intron;ID=intron_FBgn0004647:5_FBgn0004647:6;Name=N-in;Parent=FBtr0070507,FBtr0304659;parent_type=mRNA" - - - -	17731	3,054,706 – 3,054,808	+	5	102	78.91	-1.93	0.75	0.953423
12895	dm3.chrX	3,054,706 – 3,054,808		17732	3,054,706 – 3,054,808	-	5	102	78.91	-1.89	0.72	0.932565
12896	dm3.chrX	3,061,743 – 3,061,852	- - CDS="CDS;ID=CDS_FBgn0004647:6_891;Name=N-cds;Parent=FBtr0070507;parent_type=mRNA" - - - - -	17733	3,061,743 – 3,061,852	+	14	121	63.31	-1.27	0.34	0.811024
12897	dm3.chrX	3,064,654 – 3,064,757	- - CDS="CDS;ID=CDS_FBgn0004647:10_891;Name=N-cds;Parent=FBtr0070507;parent_type=mRNA" - - - - -	17734	3,064,654 – 3,064,757	-	12	107	87.34	-1.67	0.79	0.819955
12898	dm3.chrX	3,097,988 – 3,098,038	- - - intron="intron;ID=intron_FBgn0000479:1_FBgn0000479:2;Name=dnc-in;Parent=FBtr0070509;parent_type=mRNA" - - - -	17735	3,097,988 – 3,098,038	-	3	50	93.33	-1.81	0.96	0.938751
12899	dm3.chrX	3,101,146 – 3,101,266	- - - intron="intron;ID=intron_FBgn0000479:1_FBgn0000479:2;Name=dnc-in;Parent=FBtr0070509;parent_type=mRNA" - - - -	17736	3,101,146 – 3,101,265	+	5	120	94.81	-1.79	0.91	0.847899
12899	dm3.chrX	3,101,146 – 3,101,266		17737	3,101,147 – 3,101,266	+	5	120	94.81	-1.85	0.91	0.870281
12900	dm3.chrX	3,105,999 – 3,106,089	- - - intron="intron;ID=intron_FBgn0000479:1_FBgn0000479:2;Name=dnc-in;Parent=FBtr0070509;parent_type=mRNA" - - - -	17738	3,105,999 – 3,106,089	-	7	98	64.48	-1.54	0.40	0.938658
12901	dm3.chrX	3,106,391 – 3,106,496	- - - intron="intron;ID=intron_FBgn0000479:1_FBgn0000479:2;Name=dnc-in;Parent=FBtr0070509;parent_type=mRNA" - - - -	17739	3,106,391 – 3,106,496	+	6	116	76.30	-1.39	0.59	0.619775
12901	dm3.chrX	3,106,391 – 3,106,496		17740	3,106,391 – 3,106,496	-	6	116	76.30	-1.41	0.59	0.637394
12902	dm3.chrX	3,123,999 – 3,124,059	- - - intron="intron;ID=intron_FBgn0000479:1_FBgn0000479:2;Name=dnc-in;Parent=FBtr0070509;parent_type=mRNA" - - - -	17741	3,123,999 – 3,124,059	+	5	60	93.20	-1.51	0.92	0.784521
12903	dm3.chrX	3,144,809 – 3,144,923	- - CDS="CDS;ID=CDS_CG12181:1_911;Name=Sgs4-cds;Parent=FBtr0070524;parent_type=mRNA" intron="intron;ID=intron_FBgn0000479:4_FBgn0000479:14;Name=dnc-in;Parent=FBtr0070509;parent_type=mRNA" - - - -	17742	3,144,809 – 3,144,923	-	3	114	86.05	-2.09	0.81	0.889171
12904	dm3.chrX	3,145,932 – 3,146,035	- - - intron="intron;ID=intron_FBgn0000479:4_FBgn0000479:14;Name=dnc-in;Parent=FBtr0070509;parent_type=mRNA" - - - -	17743	3,145,932 – 3,146,035	+	3	113	61.52	-1.02	0.57	0.723241
12905	dm3.chrX	3,155,847 – 3,155,981	- - - intron="intron;ID=intron_FBgn0000479:7_FBgn0000479:8;Name=dnc-in;Parent=FBtr0070512,FBtr0070513;parent_type=mRNA" - - - -	17744	3,155,847 – 3,155,981	+	12	154	79.49	-2.16	0.51	0.901211
12906	dm3.chrX	3,160,836 – 3,160,905	- - - intron="intron;ID=intron_FBgn0000479:7_FBgn0000479:8;Name=dnc-in;Parent=FBtr0070512,FBtr0070513;parent_type=mRNA" - - - -	17745	3,160,836 – 3,160,905	-	8	70	78.68	-1.06	0.70	0.619165
12907	dm3.chrX	3,161,471 – 3,161,574	- - - intron="intron;ID=intron_FBgn0000479:7_FBgn0000479:8;Name=dnc-in;Parent=FBtr0070512,FBtr0070513;parent_type=mRNA" - - - -	17746	3,161,471 – 3,161,574	-	6	110	83.97	-1.45	0.80	0.765094
12908	dm3.chrX	3,165,085 – 3,165,188	- - - intron="intron;ID=intron_FBgn0000479:7_FBgn0000479:8;Name=dnc-in;Parent=FBtr0070512,FBtr0070513;parent_type=mRNA" - - - -	17747	3,165,085 – 3,165,187	+	5	102	95.63	-2.30	0.98	0.985983
				17748	3,165,085 – 3,165,187	-	5	102	95.63	-1.23	0.99	0.828747
				17749	3,165,086 – 3,165,188	+	5	102	95.63	-2.48	0.98	0.990543
				17750	3,165,086 – 3,165,188	-	5	102	95.63	-1.47	0.99	0.908428
12909	dm3.chrX	3,165,649 – 3,165,741	- - - intron="intron;ID=intron_FBgn0000479:7_FBgn0000479:8;Name=dnc-in;Parent=FBtr0070512,FBtr0070513;parent_type=mRNA" - - - -	17751	3,165,649 – 3,165,741	+	6	108	65.58	-1.43	0.53	0.970866
12910	dm3.chrX	3,190,133 – 3,190,227	- - - intron="intron;ID=intron_FBgn0000479:11_FBgn0000479:14;Name=dnc-in;Parent=FBtr0070518;parent_type=mRNA" - - - -	17752	3,190,133 – 3,190,227	+	7	118	66.95	-1.69	0.35	0.608736
12910	dm3.chrX	3,190,133 – 3,190,227		17753	3,190,133 – 3,190,227	-	7	118	66.95	-1.84	0.39	0.872971
12911	dm3.chrX	3,191,530 – 3,191,632	- - - intron="intron;ID=intron_FBgn0000479:11_FBgn0000479:14;Name=dnc-in;Parent=FBtr0070518;parent_type=mRNA" - - - -	17754	3,191,530 – 3,191,632	+	5	114	71.22	-1.37	0.62	0.868240
12912	dm3.chrX	3,194,809 – 3,194,976	- - - intron="intron;ID=intron_FBgn0000479:11_FBgn0000479:14;Name=dnc-in;Parent=FBtr0070518;parent_type=mRNA" - - - -	17755	3,194,809 – 3,194,976	-	5	182	71.11	-1.99	0.39	0.586700
12913	dm3.chrX	3,205,474 – 3,205,618	- - - intron="intron;ID=intron_FBgn0000479:11_FBgn0000479:14;Name=dnc-in;Parent=FBtr0070518;parent_type=mRNA" - - - -	17756	3,205,474 – 3,205,618	-	7	154	66.90	-1.37	0.35	0.546203
12914	dm3.chrX	3,206,998 – 3,207,060	- - - intron="intron;ID=intron_FBgn0000479:11_FBgn0000479:14;Name=dnc-in;Parent=FBtr0070518;parent_type=mRNA" - - - -	17757	3,206,998 – 3,207,060	+	7	67	64.79	-1.42	0.50	0.982184
12914	dm3.chrX	3,206,998 – 3,207,060		17758	3,206,998 – 3,207,060	-	7	67	64.79	-2.15	0.28	0.891910
12915	dm3.chrX	3,213,996 – 3,214,055	- - - intron="intron;ID=intron_FBgn0000479:13_FBgn0000479:14;Name=dnc-in;Parent=FBtr0070520;parent_type=mRNA" - - - -	17759	3,213,996 – 3,214,055	+	8	66	77.16	-1.08	0.76	0.850590
12916	dm3.chrX	3,233,065 – 3,233,197	- - CDS="CDS;ID=CDS_FBgn0000479:27_975;Name=dnc-cds;Parent=FBtr0070519,FBtr0070520,FBtr0070521,FBtr0070509,FBtr0070511,FBtr0070512,FBtr0070513,FBtr0070515,FBtr0070516;parent_type=mRNA" - - - - -	17760	3,233,065 – 3,233,161	+	4	96	66.84	-1.50	0.61	0.969753
				17761	3,233,065 – 3,233,161	-	4	96	66.84	-2.24	0.62	0.997367
				17762	3,233,084 – 3,233,197	-	8	113	64.15	-1.22	0.37	0.734326
12917	dm3.chrX	3,248,423 – 3,248,514	- - - - - - - -	17763	3,248,423 – 3,248,514	-	4	91	61.57	-1.08	0.44	0.615732
12918	dm3.chrX	3,263,153 – 3,263,280	- - - - - - - -	17764	3,263,153 – 3,263,280	-	3	127	74.93	-2.11	0.51	0.555914
12919	dm3.chrX	3,274,196 – 3,274,294	- - - intron="intron;ID=intron_CG10798:2_CG10798:3;Name=dm-in;Parent=FBtr0070525;parent_type=mRNA" - - - -	17765	3,274,196 – 3,274,294	+	6	104	69.41	-1.42	0.49	0.890962
12920	dm3.chrX	3,274,420 – 3,274,538	- - - intron="intron;ID=intron_CG10798:2_CG10798:3;Name=dm-in;Parent=FBtr0070525;parent_type=mRNA" - - - -	17766	3,274,420 – 3,274,538	+	4	119	73.14	-1.72	0.55	0.788681
12920	dm3.chrX	3,274,420 – 3,274,538		17767	3,274,420 – 3,274,538	-	4	119	73.14	-1.36	0.63	0.742578
12921	dm3.chrX	3,276,058 – 3,276,118	- - - intron="intron;ID=intron_CG10798:2_CG10798:3;Name=dm-in;Parent=FBtr0070525;parent_type=mRNA" - - - -	17768	3,276,058 – 3,276,118	-	9	70	74.65	-1.42	0.54	0.699163
12922	dm3.chrX	3,277,871 – 3,277,970	- - - intron="intron;ID=intron_CG10798:2_CG10798:3;Name=dm-in;Parent=FBtr0070525;parent_type=mRNA" - - - -	17769	3,277,871 – 3,277,970	-	6	105	89.25	-2.36	0.65	0.670365
12923	dm3.chrX	3,278,048 – 3,278,143	- - - intron="intron;ID=intron_CG10798:2_CG10798:3;Name=dm-in;Parent=FBtr0070525;parent_type=mRNA" - - - -	17770	3,278,048 – 3,278,143	+	5	96	83.06	-2.17	0.66	0.857270
12924	dm3.chrX	3,289,671 – 3,289,779	- - - intron="intron;ID=intron_FBgn0029657:3_FBgn0029657:2;Name=CG12535-in;Parent=FBtr0070534;parent_type=mRNA" - - - -	17771	3,289,671 – 3,289,779	-	6	117	75.89	-1.68	0.49	0.588489
12925	dm3.chrX	3,316,104 – 3,316,157	- - - intron="intron;ID=intron_FBgn0029657:3_FBgn0029657:2;Name=CG12535-in;Parent=FBtr0070534;parent_type=mRNA" - - - -	17772	3,316,104 – 3,316,157	-	11	60	76.27	-1.46	0.55	0.728268
12926	dm3.chrX	3,321,474 – 3,321,566	FBnoncoding="tRNA;ID=FBtr0070533;Name=tRNA:CR32493-RA;Parent=FBgn0052493;Alias=CR32493-RA;Dbxref=FlyBase_Annotation_IDs:CR32493-RA;score_text=Weakly" tRNAscann="Gln_chrX_trna26" - intron="intron;ID=intron_FBgn0029657:4_FBgn0029657:3;Name=CG12535-in;Parent=FBtr0070534;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AAPN01190225.1/1900-1971\|2.3e-26" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|2.2e-20" "unique_Noncode_2.0=u183049_mRNAlike\|1.9e-20" -	17773	3,321,474 – 3,321,566	+	11	120	75.75	-2.02	0.95	0.993539
12926	dm3.chrX	3,321,474 – 3,321,566		17774	3,321,474 – 3,321,566	-	11	120	75.75	-1.42	0.95	0.977046
12927	dm3.chrX	3,322,935 – 3,323,013	- - - intron="intron;ID=intron_FBgn0029657:4_FBgn0029657:3;Name=CG12535-in;Parent=FBtr0070534;parent_type=mRNA" - - - -	17775	3,322,935 – 3,323,013	+	6	92	59.13	-0.50	0.50	0.643414
12928	dm3.chrX	3,343,454 – 3,343,546	- - - - - - - -	17776	3,343,454 – 3,343,546	+	4	115	65.55	-2.22	0.61	0.997282
12928	dm3.chrX	3,343,454 – 3,343,546	- - - - - - - -	17777	3,343,454 – 3,343,546	-	4	115	65.55	-2.18	0.38	0.916241
12929	dm3.chrX	3,351,842 – 3,351,908	- - - - - - - -	17778	3,351,842 – 3,351,908	+	6	85	69.53	-0.82	0.60	0.589975
12930	dm3.chrX	3,369,040 – 3,369,142	- - - - - - - -	17779	3,369,040 – 3,369,142	-	6	115	55.76	-1.17	0.29	0.528978
12931	dm3.chrX	3,379,943 – 3,380,054	- - CDS="CDS;ID=CDS_CG10803:1_911;Name=CG10803-cds;Parent=FBtr0070569;parent_type=mRNA" - - - - -	17780	3,379,943 – 3,380,054	+	5	116	70.68	-1.61	0.48	0.818749
12931	dm3.chrX	3,379,943 – 3,380,054		17781	3,379,943 – 3,380,054	-	5	116	70.68	-1.75	0.41	0.668652
12932	dm3.chrX	3,383,225 – 3,383,319	- - - - - - - -	17782	3,383,225 – 3,383,319	-	7	104	75.60	-2.01	0.38	0.537252
12933	dm3.chrX	3,398,451 – 3,398,549	- - - intron="intron;ID=intron_CG14271:1_CG14271:2;Name=Gas8-in;Parent=FBtr0070589;parent_type=mRNA" - - - -	17783	3,398,451 – 3,398,549	+	6	108	78.02	-1.23	0.67	0.601611
12934	dm3.chrX	3,399,298 – 3,399,393	- - - - - - - -	17784	3,399,298 – 3,399,393	+	7	95	77.92	-1.35	0.63	0.568560
12935	dm3.chrX	3,402,967 – 3,403,029	- - - - - - - -	17785	3,402,967 – 3,403,029	+	6	62	92.80	-2.42	0.83	0.940184
12936	dm3.chrX	3,411,364 – 3,411,479	- - - intron="intron;ID=intron_CG32791:6_CG32791:7;Name=CG32791-in;Parent=FBtr0070588;parent_type=mRNA" - - - -	17786	3,411,364 – 3,411,463	+	6	103	81.13	-1.98	0.52	0.564987
				17787	3,411,380 – 3,411,479	+	5	100	93.40	-2.26	0.92	0.968449
				17788	3,411,380 – 3,411,479	-	5	100	93.40	-2.22	0.95	0.978287
12937	dm3.chrX	3,431,975 – 3,432,070	- - - - - - - -	17789	3,431,975 – 3,432,070	+	10	108	67.96	-0.44	0.54	0.551912
12938	dm3.chrX	3,440,727 – 3,440,818	- - - - - - - -	17790	3,440,727 – 3,440,818	-	4	116	71.39	-1.99	0.50	0.850439
12939	dm3.chrX	3,445,075 – 3,445,166	- - - - - - - -	17791	3,445,075 – 3,445,166	-	7	103	83.51	-2.66	0.62	0.967089
12940	dm3.chrX	3,462,106 – 3,462,203	- - - intron="intron;ID=intron_FBgn0052792:2_FBgn0052792:5;Name=CG32792-in;Parent=FBtr0290005;parent_type=mRNA" - - - -	17792	3,462,106 – 3,462,198	+	5	96	72.78	-2.13	0.63	0.979649
12940	dm3.chrX	3,462,106 – 3,462,203		17793	3,462,111 – 3,462,203	+	5	96	72.14	-2.23	0.64	0.988125
12941	dm3.chrX	3,470,695 – 3,470,811	- - - intron="intron;ID=intron_FBgn0028961:1_FBgn0028961:2;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17794	3,470,695 – 3,470,811	+	6	122	62.36	-0.52	0.47	0.509114
12942	dm3.chrX	3,477,254 – 3,477,372	- - - intron="intron;ID=intron_FBgn0028961:1_FBgn0028961:2;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17795	3,477,254 – 3,477,372	+	7	122	79.01	-1.79	0.57	0.762335
12943	dm3.chrX	3,482,425 – 3,482,507	- - - intron="intron;ID=intron_FBgn0028961:1_FBgn0028961:2;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17796	3,482,425 – 3,482,507	-	5	82	92.93	-2.55	0.88	0.976339
12944	dm3.chrX	3,484,418 – 3,484,522	- - - intron="intron;ID=intron_FBgn0028961:1_FBgn0028961:2;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17797	3,484,418 – 3,484,522	+	5	120	78.06	-2.09	0.46	0.627754
12944	dm3.chrX	3,484,418 – 3,484,522		17798	3,484,418 – 3,484,522	-	5	120	78.06	-2.93	0.53	0.989888
12945	dm3.chrX	3,503,238 – 3,503,320	- - - intron="intron;ID=intron_FBgn0028961:1_FBgn0028961:2;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17799	3,503,238 – 3,503,320	+	3	82	52.44	-1.67	0.28	0.528685
12946	dm3.chrX	3,527,146 – 3,527,207	- - - intron="intron;ID=intron_FBgn0028961:2_FBgn0028961:3;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17800	3,527,146 – 3,527,207	+	5	62	62.58	-1.19	0.37	0.537965
12947	dm3.chrX	3,531,496 – 3,531,612	- - - intron="intron;ID=intron_FBgn0028961:2_FBgn0028961:3;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17801	3,531,496 – 3,531,612	-	7	120	74.78	-1.72	0.76	0.982011
12948	dm3.chrX	3,533,859 – 3,533,963	- - - intron="intron;ID=intron_FBgn0028961:2_FBgn0028961:3;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17802	3,533,859 – 3,533,963	-	4	111	90.29	-2.76	0.84	0.981692
12949	dm3.chrX	3,538,122 – 3,538,214	- - - intron="intron;ID=intron_FBgn0028961:2_FBgn0028961:3;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17803	3,538,122 – 3,538,214	-	9	102	67.97	-1.85	0.45	0.979310
12950	dm3.chrX	3,544,522 – 3,544,573	- - - intron="intron;ID=intron_FBgn0028961:3_FBgn0028961:4;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17804	3,544,522 – 3,544,573	+	3	51	90.85	-2.22	1.00	0.990694
12951	dm3.chrX	3,546,456 – 3,546,555	- - - intron="intron;ID=intron_FBgn0028961:3_FBgn0028961:4;Name=AlstR-in;Parent=FBtr0070575;parent_type=mRNA" - - - -	17805	3,546,456 – 3,546,555	+	7	114	73.09	-1.95	0.46	0.882603
12952	dm3.chrX	3,565,511 – 3,565,591	- - - - - - - -	17806	3,565,511 – 3,565,591	+	5	83	87.93	-1.58	0.79	0.557439
12953	dm3.chrX	3,567,692 – 3,567,797	- - - intron="intron;ID=intron_FBgn0023215:1_FBgn0023215:2;Name=Mnt-in;Parent=FBtr0301821;parent_type=mRNA" - - - -	17807	3,567,692 – 3,567,797	-	6	120	69.80	-1.34	0.53	0.850258
12954	dm3.chrX	3,572,399 – 3,572,518	- - - intron="intron;ID=intron_FBgn0023215:1_FBgn0023215:2;Name=Mnt-in;Parent=FBtr0301821;parent_type=mRNA" - - - -	17808	3,572,399 – 3,572,518	+	6	123	67.47	-1.45	0.40	0.800952
12955	dm3.chrX	3,585,806 – 3,585,912	- - - intron="intron;ID=intron_FBgn0023215:5_FBgn0023215:6;Name=Mnt-in;Parent=FBtr0070579,FBtr0301825;parent_type=mRNA" - - - -	17809	3,585,806 – 3,585,912	-	5	122	72.54	-1.76	0.45	0.639680
12956	dm3.chrX	3,588,572 – 3,588,677	- - - intron="intron;ID=intron_FBgn0023215:6_FBgn0023215:7;Name=Mnt-in;Parent=FBtr0301821,FBtr0301823,FBtr0301825;parent_type=mRNA" - - - -	17810	3,588,572 – 3,588,677	-	5	113	62.18	-1.49	0.33	0.500000
12957	dm3.chrX	3,600,482 – 3,600,551	- - - intron="intron;ID=intron_FBgn0015286:2_FBgn0015286:1;Name=Rala-in;Parent=FBtr0070583,FBtr0070584;parent_type=mRNA" - - - -	17811	3,600,482 – 3,600,551	-	5	69	90.14	-1.59	0.93	0.906537
12958	dm3.chrX	3,605,102 – 3,605,155	- - - intron="intron;ID=intron_FBgn0015286:6_FBgn0015286:5;Name=Rala-in;Parent=FBtr0070583;parent_type=mRNA" - - - -	17812	3,605,102 – 3,605,155	-	5	53	94.14	-1.03	1.00	0.792643
12959	dm3.chrX	3,611,390 – 3,611,445	- - - intron="intron;ID=intron_FBgn0015286:7_FBgn0015286:6;Name=Rala-in;Parent=FBtr0070583;parent_type=mRNA" - - - -	17813	3,611,390 – 3,611,445	-	10	59	82.98	-1.90	0.66	0.882325
12960	dm3.chrX	3,613,778 – 3,613,938	- - - - - - - -	17814	3,613,778 – 3,613,898	+	4	120	84.86	-2.58	0.79	0.981818
				17815	3,613,778 – 3,613,898	-	4	120	84.86	-2.36	0.62	0.774059
				17816	3,613,818 – 3,613,938	+	4	120	81.25	-1.67	0.68	0.628923
12961	dm3.chrX	3,613,993 – 3,614,076	- - - - - - - -	17817	3,613,993 – 3,614,076	-	6	85	76.17	-2.12	0.47	0.886527
12962	dm3.chrX	3,614,146 – 3,614,220	- - - intron="intron;ID=intron_FBgn0086899:1_FBgn0086899:4;Name=tlk-in;Parent=FBtr0299580;parent_type=mRNA" - - - -	17818	3,614,146 – 3,614,220	-	7	82	65.86	-1.21	0.49	0.924330
12963	dm3.chrX	3,625,784 – 3,625,901	- - - intron="intron;ID=intron_FBgn0086899:5_FBgn0086899:13;Name=tlk-in;Parent=FBtr0299579;parent_type=mRNA" - - - -	17819	3,625,784 – 3,625,888	-	3	104	89.42	-1.52	0.97	0.927182
12963	dm3.chrX	3,625,784 – 3,625,901		17820	3,625,808 – 3,625,901	-	3	93	94.98	-0.79	0.99	0.530288
12964	dm3.chrX	3,630,303 – 3,630,407	- - - intron="intron;ID=intron_FBgn0086899:5_FBgn0086899:13;Name=tlk-in;Parent=FBtr0299579;parent_type=mRNA" - - - -	17821	3,630,303 – 3,630,407	+	5	106	68.05	-1.35	0.45	0.700328
12965	dm3.chrX	3,633,778 – 3,633,875	- - - intron="intron;ID=intron_FBgn0086899:5_FBgn0086899:13;Name=tlk-in;Parent=FBtr0299579;parent_type=mRNA" - - - -	17822	3,633,778 – 3,633,868	-	4	100	82.83	-2.02	0.67	0.766304
12965	dm3.chrX	3,633,778 – 3,633,875		17823	3,633,784 – 3,633,875	-	4	100	85.69	-2.24	0.78	0.940376
12966	dm3.chrX	3,637,021 – 3,637,085	- - - intron="intron;ID=intron_FBgn0086899:5_FBgn0086899:13;Name=tlk-in;Parent=FBtr0299579;parent_type=mRNA" - - - -	17824	3,637,021 – 3,637,085	-	4	72	81.82	-1.26	0.79	0.511929
12967	dm3.chrX	3,658,233 – 3,658,307	- - - intron="intron;ID=intron_FBgn0086899:8_FBgn0086899:13;Name=tlk-in;Parent=FBtr0112680;parent_type=mRNA" - - - -	17825	3,658,233 – 3,658,307	+	4	74	78.85	-2.98	0.65	0.993502
12967	dm3.chrX	3,658,233 – 3,658,307		17826	3,658,233 – 3,658,307	-	4	74	78.85	-2.13	0.75	0.967460
12968	dm3.chrX	3,665,051 – 3,665,125	- - - intron="intron;ID=intron_FBgn0086899:8_FBgn0086899:13;Name=tlk-in;Parent=FBtr0112680;parent_type=mRNA" - - - -	17827	3,665,051 – 3,665,125	+	6	74	79.54	-1.41	0.83	0.911905
12969	dm3.chrX	3,665,165 – 3,665,297	- - - intron="intron;ID=intron_FBgn0086899:8_FBgn0086899:13;Name=tlk-in;Parent=FBtr0112680;parent_type=mRNA" - - - -	17828	3,665,165 – 3,665,265	+	3	100	85.42	-2.52	0.66	0.807717
12969	dm3.chrX	3,665,165 – 3,665,297		17829	3,665,186 – 3,665,297	+	3	111	90.00	-2.08	0.83	0.839242
12970	dm3.chrX	3,666,904 – 3,667,007	- - - intron="intron;ID=intron_FBgn0086899:8_FBgn0086899:13;Name=tlk-in;Parent=FBtr0112680;parent_type=mRNA" - - - -	17830	3,666,904 – 3,667,007	-	5	104	86.17	-1.87	0.77	0.841873
12971	dm3.chrX	3,678,502 – 3,678,595	- - - - - - - -	17831	3,678,502 – 3,678,595	-	10	99	62.09	-0.08	0.51	0.639338
12972	dm3.chrX	3,693,070 – 3,693,120	- - - - - - - -	17832	3,693,070 – 3,693,120	-	3	50	98.67	-1.39	0.97	0.761045
12973	dm3.chrX	3,700,373 – 3,700,538	- - - intron="intron;ID=intron_FBgn0061173:2_FBgn0061173:3;Name=fd3F-in;Parent=FBtr0070602;parent_type=mRNA" - - - -	17833	3,700,373 – 3,700,538	+	7	172	69.53	-2.75	0.41	0.993120
12974	dm3.chrX	3,706,861 – 3,706,977	- - - intron="intron;ID=intron_FBgn0000542:1_FBgn0000542:2;Name=ec-in;Parent=FBtr0112801;parent_type=mRNA" - - - -	17834	3,706,861 – 3,706,977	+	7	120	65.45	-1.09	0.53	0.910991
12975	dm3.chrX	3,709,075 – 3,709,174	- - - intron="intron;ID=intron_FBgn0000542:1_FBgn0000542:2;Name=ec-in;Parent=FBtr0112801;parent_type=mRNA" - - - -	17835	3,709,075 – 3,709,174	+	6	111	75.39	-1.46	0.56	0.685388
12976	dm3.chrX	3,713,725 – 3,713,812	FBnoncoding="tRNA;ID=FBtr0070603;Name=tRNA:CR32785-RA;Parent=FBgn0052785;Alias=CR32785-RA;Dbxref=FlyBase_Annotation_IDs:CR32785-RA;score_text=Weakly" tRNAscann="Gln_chrX_trna1" - intron="intron;ID=intron_FBgn0000542:1_FBgn0000542:2;Name=ec-in;Parent=FBtr0112801;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;AANI01016231.1/175977-176048\|3.8e-34" "Noncode_2.0=n184899_u183049_AK138213_mRNAlike\|1.3e-24" "unique_Noncode_2.0=u183049_mRNAlike\|1.2e-24" -	17836	3,713,725 – 3,713,812	+	12	99	80.53	-1.57	0.82	0.965025
12976	dm3.chrX	3,713,725 – 3,713,812		17837	3,713,725 – 3,713,812	-	12	99	80.53	-2.81	0.79	0.998214
12977	dm3.chrX	3,716,604 – 3,716,748	- - - intron="intron;ID=intron_FBgn0000542:2_FBgn0000542:4;Name=ec-in;Parent=FBtr0112801;parent_type=mRNA" - - - -	17838	3,716,604 – 3,716,748	-	7	148	75.45	-2.00	0.52	0.938357
12978	dm3.chrX	3,721,653 – 3,721,727	FBnoncoding="tRNA;ID=FBtr0070604;Name=tRNA:P:3E-RA;Parent=FBgn0025118;Dbxref=FlyBase_Annotation_IDs:CR32784-RA;score_text=Weakly" tRNAscann="Pro_chrX_trna2" - intron="intron;ID=intron_FBgn0000542:2_FBgn0000542:4;Name=ec-in;Parent=FBtr0112801;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|1.8e-29" - - -	17839	3,721,653 – 3,721,727	+	12	74	93.37	-1.48	0.99	0.940363
12978	dm3.chrX	3,721,653 – 3,721,727		17840	3,721,653 – 3,721,727	-	12	74	93.37	-2.72	0.93	0.992808
12979	dm3.chrX	3,727,778 – 3,727,876	- - - - - - - -	17841	3,727,778 – 3,727,876	-	7	118	56.89	-1.45	0.37	0.930079
12980	dm3.chrX	3,731,467 – 3,731,557	- - - intron="intron;ID=intron_FBgn0000542:3_FBgn0000542:4;Name=ec-in;Parent=FBtr0070606;parent_type=mRNA" - - - -	17842	3,731,467 – 3,731,557	+	4	97	65.22	-0.80	0.64	0.732426
12981	dm3.chrX	3,740,442 – 3,740,497	- - - intron="intron;ID=intron_FBgn0000542:5_FBgn0000542:6;Name=ec-in;Parent=FBtr0112802;parent_type=mRNA" - - - -	17843	3,740,442 – 3,740,497	+	5	67	85.78	-1.45	0.88	0.804116
12982	dm3.chrX	3,741,330 – 3,741,474	- - - intron="intron;ID=intron_FBgn0000542:5_FBgn0000542:6;Name=ec-in;Parent=FBtr0112802;parent_type=mRNA" - - - -	17844	3,741,330 – 3,741,474	-	6	155	69.79	-1.50	0.44	0.531913
12983	dm3.chrX	3,742,999 – 3,743,110	- - - intron="intron;ID=intron_FBgn0000542:5_FBgn0000542:6;Name=ec-in;Parent=FBtr0112802;parent_type=mRNA" - - - -	17845	3,742,999 – 3,743,110	+	8	116	62.76	-0.76	0.43	0.623984
12984	dm3.chrX	3,743,203 – 3,743,303	- - - intron="intron;ID=intron_FBgn0000542:5_FBgn0000542:6;Name=ec-in;Parent=FBtr0112802;parent_type=mRNA" - - - -	17846	3,743,203 – 3,743,303	-	4	105	74.72	-1.26	0.68	0.665959
12985	dm3.chrX	3,743,839 – 3,743,947	- - - intron="intron;ID=intron_FBgn0000542:5_FBgn0000542:6;Name=ec-in;Parent=FBtr0112802;parent_type=mRNA" - - - -	17847	3,743,839 – 3,743,947	-	8	128	64.79	-1.92	0.29	0.796037
12986	dm3.chrX	3,750,990 – 3,751,106	- - - - - - - -	17848	3,750,990 – 3,751,106	+	5	117	81.62	-2.95	0.68	0.993637
12986	dm3.chrX	3,750,990 – 3,751,106	- - - - - - - -	17849	3,750,990 – 3,751,106	-	5	117	81.62	-1.45	0.68	0.507466
12987	dm3.chrX	3,768,747 – 3,768,886	- - - intron="intron;ID=intron_CG2930:2_CG2930:3;Name=CG2930-in;Parent=FBtr0070608,FBtr0070609,FBtr0070610;parent_type=mRNA" - - - -	17850	3,768,747 – 3,768,860	+	6	120	72.99	-1.70	0.44	0.684298
				17851	3,768,747 – 3,768,860	-	6	120	72.99	-1.42	0.53	0.779832
				17852	3,768,787 – 3,768,886	+	5	106	83.50	-2.53	0.65	0.933681
				17853	3,768,787 – 3,768,886	-	5	106	83.50	-2.09	0.63	0.685434
12988	dm3.chrX	3,769,177 – 3,769,277	- - - intron="intron;ID=intron_CG2930:2_CG2930:3;Name=CG2930-in;Parent=FBtr0070608,FBtr0070609,FBtr0070610;parent_type=mRNA" - - - -	17854	3,769,177 – 3,769,277	+	5	106	93.26	-3.12	0.84	0.989055
12989	dm3.chrX	3,775,634 – 3,775,794	- - CDS="CDS;ID=CDS_CG2934:2_969;Name=VhaAC39-1-cds;Parent=FBtr0070611;parent_type=mRNA" - - - - -	17855	3,775,634 – 3,775,754	+	15	120	83.35	-1.79	0.56	0.609606
12989	dm3.chrX	3,775,634 – 3,775,794		17856	3,775,674 – 3,775,794	+	15	120	84.16	-2.00	0.59	0.815538
12990	dm3.chrX	3,777,256 – 3,777,357	- - - - - - - -	17857	3,777,256 – 3,777,357	+	6	108	77.34	-2.42	0.36	0.629625
12991	dm3.chrX	3,778,719 – 3,778,809	- - - intron="intron;ID=intron_CG15239:1_CG15239:2;Name=CG15239-in;Parent=FBtr0070612;parent_type=mRNA" - - - -	17858	3,778,719 – 3,778,809	+	3	90	97.78	-1.20	0.97	0.657319
12992	dm3.chrX	3,779,395 – 3,779,495	- - - intron="intron;ID=intron_CG15239:1_CG15239:2;Name=CG15239-in;Parent=FBtr0070612;parent_type=mRNA" - - - -	17859	3,779,395 – 3,779,495	-	6	108	80.51	-2.12	0.71	0.957060
12993	dm3.chrX	3,780,292 – 3,780,412	- - - intron="intron;ID=intron_CG15239:1_CG15239:2;Name=CG15239-in;Parent=FBtr0070612;parent_type=mRNA" - - - -	17860	3,780,292 – 3,780,412	+	4	120	90.62	-1.86	0.78	0.577741
12993	dm3.chrX	3,780,292 – 3,780,412		17861	3,780,292 – 3,780,412	-	4	120	90.62	-2.30	0.69	0.609275
12994	dm3.chrX	3,784,520 – 3,784,674	- - - - - - - -	17862	3,784,520 – 3,784,634	+	5	120	89.61	-2.20	0.73	0.756319
12994	dm3.chrX	3,784,520 – 3,784,674	- - - - - - - -	17863	3,784,554 – 3,784,674	-	5	120	90.33	-2.20	0.78	0.854890
12995	dm3.chrX	3,784,937 – 3,785,040	- - - - - - - -	17864	3,784,937 – 3,785,040	-	3	103	94.81	-1.64	0.91	0.745270
12996	dm3.chrX	3,786,133 – 3,786,276	- - - - - - - -	17865	3,786,133 – 3,786,224	+	5	91	97.58	-1.69	0.95	0.860622
12996	dm3.chrX	3,786,133 – 3,786,276	- - - - - - - -	17866	3,786,186 – 3,786,276	+	5	90	98.67	-1.81	0.97	0.920120
12997	dm3.chrX	3,790,470 – 3,790,522	- - CDS="CDS;ID=CDS_FBgn0260658:1_969;Name=CG42541-cds;Parent=FBtr0301100;parent_type=mRNA" - - - - -	17867	3,790,470 – 3,790,522	-	8	52	76.51	-1.90	0.40	0.607088
12998	dm3.chrX	3,794,009 – 3,794,108	- - - intron="intron;ID=intron_FBgn0260658:4_FBgn0260658:3;Name=CG42541-in;Parent=FBtr0301099,FBtr0301100;parent_type=mRNA" - - - -	17868	3,794,009 – 3,794,108	-	3	120	73.75	-1.88	0.75	0.935808
12999	dm3.chrX	3,799,371 – 3,799,476	- - - intron="intron;ID=intron_FBgn0260658:9_FBgn0260658:7;Name=CG42541-in;Parent=FBtr0301099;parent_type=mRNA" - - - -	17869	3,799,371 – 3,799,476	+	6	112	77.35	-2.06	0.42	0.516478
13000	dm3.chrX	3,808,494 – 3,808,587	- - - - - - - -	17870	3,808,494 – 3,808,587	+	5	120	72.90	-1.40	0.57	0.564180
13000	dm3.chrX	3,808,494 – 3,808,587	- - - - - - - -	17871	3,808,494 – 3,808,587	-	5	120	72.90	-1.69	0.58	0.822341
13001	dm3.chrX	3,809,298 – 3,809,394	- - - - - - - -	17872	3,809,298 – 3,809,394	+	5	98	90.51	-1.17	0.97	0.827397
13002	dm3.chrX	3,811,276 – 3,811,366	- - - - - - - -	17873	3,811,276 – 3,811,366	-	3	90	85.93	-2.70	0.64	0.869030
13003	dm3.chrX	3,814,831 – 3,814,975	- - - - - - - -	17874	3,814,831 – 3,814,975	+	4	152	80.56	-1.90	0.61	0.614389
13004	dm3.chrX	3,815,606 – 3,815,701	- - - - - - - -	17875	3,815,606 – 3,815,701	+	4	95	66.19	-1.88	0.62	0.992302
13005	dm3.chrX	3,817,547 – 3,817,657	- - - - - - - -	17876	3,817,547 – 3,817,657	+	5	110	79.23	-1.80	0.63	0.792582
13006	dm3.chrX	3,821,813 – 3,821,905	- - - - - - - -	17877	3,821,813 – 3,821,905	-	4	92	50.27	-1.01	0.38	0.854254
13007	dm3.chrX	3,822,584 – 3,822,676	- - - - - - - -	17878	3,822,584 – 3,822,676	-	6	120	75.92	-1.26	0.67	0.597860
13008	dm3.chrX	3,823,970 – 3,824,084	- - - - - - - -	17879	3,823,970 – 3,824,084	-	6	117	73.43	-1.62	0.47	0.728511
13009	dm3.chrX	3,825,626 – 3,825,721	- - - - - - - -	17880	3,825,626 – 3,825,721	+	4	95	89.74	-2.19	0.86	0.939547
13010	dm3.chrX	3,830,413 – 3,830,482	- - - - - - - -	17881	3,830,413 – 3,830,482	+	6	70	65.38	-1.07	0.53	0.941686
13011	dm3.chrX	3,834,915 – 3,835,023	- - - - - - - -	17882	3,834,915 – 3,835,023	+	6	115	58.96	-1.80	0.36	0.973486
13012	dm3.chrX	3,838,090 – 3,838,141	- - - - - - - -	17883	3,838,090 – 3,838,141	+	5	51	89.78	-1.49	0.85	0.611110
13013	dm3.chrX	3,842,270 – 3,842,381	- - - - - - - -	17884	3,842,270 – 3,842,381	+	5	112	84.36	-1.79	0.68	0.516617
13013	dm3.chrX	3,842,270 – 3,842,381	- - - - - - - -	17885	3,842,270 – 3,842,381	-	5	112	84.36	-1.77	0.71	0.607454
13014	dm3.chrX	3,845,686 – 3,845,786	- - CDS="CDS;ID=CDS_CG5014:4_927;Name=Vap-33-1-cds;Parent=FBtr0070618;parent_type=mRNA" - - - - -	17886	3,845,686 – 3,845,786	-	13	113	77.03	-1.58	0.61	0.949858
13015	dm3.chrX	3,858,256 – 3,858,356	- - CDS="CDS;ID=CDS_CG6450:4_929;Name=lva-cds;Parent=FBtr0070626;parent_type=mRNA" - - - - -	17887	3,858,256 – 3,858,356	-	12	115	67.18	-1.61	0.30	0.596982
13016	dm3.chrX	3,869,911 – 3,870,005	- - - - - - - -	17888	3,869,911 – 3,870,005	+	5	112	83.91	-1.60	0.72	0.603551
13017	dm3.chrX	3,870,026 – 3,870,119	- - - - - - - -	17889	3,870,026 – 3,870,119	-	11	110	71.22	-0.77	0.54	0.539580
13018	dm3.chrX	3,878,810 – 3,878,917	- - - - - - - -	17890	3,878,810 – 3,878,917	+	3	107	66.04	-2.66	0.47	0.987639
13018	dm3.chrX	3,878,810 – 3,878,917	- - - - - - - -	17891	3,878,810 – 3,878,917	-	3	107	66.04	-2.13	0.53	0.969110
13019	dm3.chrX	3,878,957 – 3,879,052	- - - - - - - -	17892	3,878,957 – 3,879,052	-	9	103	79.56	-1.68	0.52	0.584829
13020	dm3.chrX	3,888,182 – 3,888,238	- - - - - - - -	17893	3,888,182 – 3,888,238	+	6	58	62.68	-0.77	0.58	0.947681
13020	dm3.chrX	3,888,182 – 3,888,238	- - - - - - - -	17894	3,888,182 – 3,888,238	-	6	58	62.68	-0.99	0.69	0.990622
13021	dm3.chrX	3,897,045 – 3,897,136	- - - - - - - -	17895	3,897,045 – 3,897,136	-	10	99	75.79	-1.17	0.52	0.527971
13022	dm3.chrX	3,897,257 – 3,897,349	- - - - - - - -	17896	3,897,257 – 3,897,349	-	10	94	81.63	-2.02	0.52	0.788595
13023	dm3.chrX	3,903,753 – 3,903,840	- - - - - - - -	17897	3,903,753 – 3,903,840	+	7	103	73.82	-1.54	0.54	0.818744
13024	dm3.chrX	3,909,302 – 3,909,367	- - - - - - - -	17898	3,909,302 – 3,909,367	+	9	77	84.58	-1.92	0.86	0.964710
13024	dm3.chrX	3,909,302 – 3,909,367	- - - - - - - -	17899	3,909,302 – 3,909,367	-	9	77	84.58	-3.79	0.85	0.999072
13025	dm3.chrX	3,909,527 – 3,909,613	- - - - - - - -	17900	3,909,527 – 3,909,613	+	5	87	76.38	-2.71	0.69	0.997050
13025	dm3.chrX	3,909,527 – 3,909,613	- - - - - - - -	17901	3,909,527 – 3,909,613	-	5	87	76.38	-2.40	0.63	0.989002
13026	dm3.chrX	3,911,737 – 3,911,790	- - - - - - - -	17902	3,911,737 – 3,911,790	-	12	61	91.85	-1.82	0.82	0.741952
13027	dm3.chrX	3,931,056 – 3,931,170	- - - - - - - -	17903	3,931,056 – 3,931,170	+	12	120	82.02	-2.19	0.53	0.766440
13027	dm3.chrX	3,931,056 – 3,931,170	- - - - - - - -	17904	3,931,056 – 3,931,170	-	12	120	82.02	-2.27	0.67	0.963179
13028	dm3.chrX	3,933,582 – 3,933,676	- - - - - - - -	17905	3,933,582 – 3,933,676	-	3	96	80.81	-2.03	0.69	0.728837
13029	dm3.chrX	3,937,349 – 3,937,442	- - - - - - - -	17906	3,937,349 – 3,937,442	+	4	100	88.08	-1.52	0.85	0.680109
13030	dm3.chrX	3,943,940 – 3,944,042	- - - - - - - -	17907	3,943,940 – 3,944,042	+	7	113	75.11	-1.55	0.49	0.601570
13031	dm3.chrX	3,945,002 – 3,945,135	- - - - - - - -	17908	3,945,002 – 3,945,135	+	6	148	74.46	-2.35	0.61	0.991313
13032	dm3.chrX	3,951,449 – 3,951,543	- - - - - - - -	17909	3,951,449 – 3,951,543	+	5	94	61.82	-1.28	0.36	0.558176
13032	dm3.chrX	3,951,449 – 3,951,543	- - - - - - - -	17910	3,951,449 – 3,951,543	-	5	94	61.82	-1.64	0.31	0.612582
13033	dm3.chrX	3,953,811 – 3,953,901	- - - - - - - -	17911	3,953,811 – 3,953,901	+	11	101	75.09	-2.23	0.43	0.933421
13034	dm3.chrX	3,964,573 – 3,964,623	- - - - - - - -	17912	3,964,573 – 3,964,623	+	7	64	70.90	-0.99	0.68	0.834351
13035	dm3.chrX	3,969,239 – 3,969,388	- - - - - - - -	17913	3,969,239 – 3,969,349	-	6	117	66.38	-1.51	0.58	0.983096
				17914	3,969,274 – 3,969,386	+	6	115	68.22	-1.44	0.40	0.671066
				17915	3,969,274 – 3,969,386	-	6	115	68.22	-1.53	0.44	0.871335
				17916	3,969,276 – 3,969,388	+	6	115	68.74	-1.37	0.40	0.525636
				17917	3,969,276 – 3,969,388	-	6	115	68.74	-1.47	0.48	0.889792
13036	dm3.chrX	4,001,128 – 4,001,218	- - - intron="intron;ID=intron_CG4944:6_CG4944:2;Name=cib-in;Parent=FBtr0070641;parent_type=mRNA" - - - -	17918	4,001,128 – 4,001,218	-	5	90	96.00	-1.06	0.96	0.571089
13037	dm3.chrX	4,002,221 – 4,002,307	- - - intron="intron;ID=intron_CG4944:6_CG4944:2;Name=cib-in;Parent=FBtr0070641;parent_type=mRNA" - - - -	17919	4,002,221 – 4,002,307	-	4	88	81.99	-2.10	0.74	0.925946
13038	dm3.chrX	4,002,492 – 4,002,607	- - - intron="intron;ID=intron_CG4944:6_CG4944:2;Name=cib-in;Parent=FBtr0070641;parent_type=mRNA" - - - -	17920	4,002,492 – 4,002,607	-	8	131	67.92	-1.78	0.33	0.654505
13039	dm3.chrX	4,006,788 – 4,006,905	- - CDS="CDS;ID=CDS_FBgn0026079:2_973;Name=CG6133-cds;Parent=FBtr0070669;parent_type=mRNA" - - - - -	17921	4,006,788 – 4,006,905	+	15	120	73.41	-1.61	0.38	0.763195
13040	dm3.chrX	4,023,163 – 4,023,215	- - - - - - - -	17922	4,023,163 – 4,023,215	+	5	52	92.31	-1.71	0.93	0.906742
13041	dm3.chrX	4,024,615 – 4,024,710	- - - - - - - -	17923	4,024,615 – 4,024,710	-	4	115	66.61	-2.15	0.35	0.604746
13042	dm3.chrX	4,042,211 – 4,042,268	- - - intron="intron;ID=intron_CG3665:4_CG3665:5;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17924	4,042,211 – 4,042,268	-	5	59	79.24	-1.78	0.63	0.797395
13043	dm3.chrX	4,047,509 – 4,047,663	- - - intron="intron;ID=intron_CG3665:3_CG3665:4;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17925	4,047,509 – 4,047,663	+	4	174	71.00	-1.10	0.75	0.813146
13044	dm3.chrX	4,049,602 – 4,049,748	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17926	4,049,602 – 4,049,714	+	4	117	92.22	-2.20	0.77	0.720002
				17927	4,049,602 – 4,049,714	-	4	117	92.22	-1.89	0.84	0.750583
				17928	4,049,639 – 4,049,748	+	5	114	92.58	-2.45	0.84	0.944342
13045	dm3.chrX	4,049,777 – 4,049,880	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17929	4,049,777 – 4,049,880	+	3	103	84.80	-2.38	0.63	0.652306
13046	dm3.chrX	4,051,260 – 4,051,369	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17930	4,051,260 – 4,051,369	+	6	120	70.69	-1.74	0.47	0.868541
13047	dm3.chrX	4,061,392 – 4,061,497	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17931	4,061,392 – 4,061,497	-	5	114	77.76	-1.42	0.66	0.657752
13048	dm3.chrX	4,064,580 – 4,064,649	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17932	4,064,580 – 4,064,649	-	7	71	69.48	-1.02	0.52	0.828179
13049	dm3.chrX	4,069,357 – 4,069,433	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17933	4,069,357 – 4,069,433	-	7	97	70.90	-1.82	0.56	0.965383
13050	dm3.chrX	4,084,082 – 4,084,194	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17934	4,084,082 – 4,084,194	+	6	116	66.10	-1.63	0.36	0.749420
13051	dm3.chrX	4,086,931 – 4,087,023	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17935	4,086,931 – 4,087,023	+	7	94	73.18	-1.69	0.52	0.837532
13052	dm3.chrX	4,089,203 – 4,089,297	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17936	4,089,203 – 4,089,297	+	5	116	79.28	-1.79	0.72	0.858305
13053	dm3.chrX	4,091,094 – 4,091,189	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17937	4,091,094 – 4,091,189	+	3	95	84.87	-2.96	0.55	0.835062
13054	dm3.chrX	4,094,236 – 4,094,454	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17938	4,094,236 – 4,094,386	+	4	150	92.00	-2.28	0.75	0.724204
				17939	4,094,236 – 4,094,386	-	4	150	92.00	-2.50	0.73	0.804971
				17940	4,094,386 – 4,094,454	+	6	68	82.94	-2.19	0.75	0.971249
13055	dm3.chrX	4,096,823 – 4,096,917	- - - intron="intron;ID=intron_CG3665:2_CG3665:3;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17941	4,096,823 – 4,096,917	+	5	105	81.70	-2.16	0.56	0.610763
13056	dm3.chrX	4,098,930 – 4,098,982	- - - intron="intron;ID=intron_CG3665:1_CG3665:2;Name=Fas2-in;Parent=FBtr0070665,FBtr0070666,FBtr0070667;parent_type=mRNA" - - - -	17942	4,098,930 – 4,098,982	-	5	57	67.31	-1.25	0.55	0.899973
13057	dm3.chrX	4,100,155 – 4,100,247	- - - - - - - -	17943	4,100,155 – 4,100,247	+	7	109	65.70	-1.36	0.40	0.702335
13057	dm3.chrX	4,100,155 – 4,100,247	- - - - - - - -	17944	4,100,155 – 4,100,247	-	7	109	65.70	-1.86	0.46	0.980770
13058	dm3.chrX	4,100,483 – 4,100,587	- - - - - - - -	17945	4,100,483 – 4,100,587	-	6	108	82.24	-2.31	0.61	0.919656
13059	dm3.chrX	4,120,002 – 4,120,064	- - - - - - - -	17946	4,120,002 – 4,120,064	+	6	62	72.85	-1.20	0.66	0.908005
13060	dm3.chrX	4,131,001 – 4,131,073	- - - - - - - -	17947	4,131,001 – 4,131,073	-	5	73	77.78	-2.47	0.57	0.954487
13061	dm3.chrX	4,136,802 – 4,136,893	- - - - - - - -	17948	4,136,802 – 4,136,893	-	7	92	73.97	-1.83	0.65	0.974144
13062	dm3.chrX	4,138,257 – 4,138,316	- - CDS="CDS;ID=CDS_CG32774:2_938;Name=Muc4B-cds;Parent=FBtr0070662;parent_type=mRNA" - - - - -	17949	4,138,257 – 4,138,316	-	11	61	64.10	-0.58	0.46	0.724120
13063	dm3.chrX	4,148,549 – 4,148,617	- - - - - - - -	17950	4,148,549 – 4,148,617	-	5	69	69.30	-1.55	0.47	0.829693
13064	dm3.chrX	4,151,536 – 4,151,647	- - - - - - - -	17951	4,151,536 – 4,151,647	+	7	121	64.10	-1.42	0.42	0.897544
13065	dm3.chrX	4,152,332 – 4,152,402	- - - - - - - -	17952	4,152,332 – 4,152,402	-	12	75	80.98	-2.29	0.66	0.985444
13066	dm3.chrX	4,153,535 – 4,153,631	- - - - - - - -	17953	4,153,535 – 4,153,631	+	8	100	72.50	-2.01	0.49	0.974321
13066	dm3.chrX	4,153,535 – 4,153,631	- - - - - - - -	17954	4,153,535 – 4,153,631	-	8	100	72.50	-2.12	0.39	0.903184
13067	dm3.chrX	4,158,808 – 4,158,901	- - - - - - - -	17955	4,158,808 – 4,158,901	+	5	99	79.27	-1.33	0.71	0.609441
13068	dm3.chrX	4,163,209 – 4,163,303	- - CDS="CDS;ID=CDS_FBgn0029702:1_925;Name=CG15572-cds;Parent=FBtr0070647;parent_type=mRNA" - - - - -	17956	4,163,209 – 4,163,300	+	6	91	82.78	-2.11	0.60	0.820927
13068	dm3.chrX	4,163,209 – 4,163,303		17957	4,163,212 – 4,163,303	+	6	91	81.61	-2.38	0.60	0.946601
13069	dm3.chrX	4,163,774 – 4,163,837	- - CDS="CDS;ID=CDS_FBgn0029702:1_925;Name=CG15572-cds;Parent=FBtr0070647;parent_type=mRNA" - - - - -	17958	4,163,774 – 4,163,837	+	3	63	68.78	-1.73	0.54	0.759890
13070	dm3.chrX	4,164,637 – 4,164,750	- - - - - - - -	17959	4,164,637 – 4,164,750	-	6	120	80.35	-2.10	0.48	0.564250
13071	dm3.chrX	4,184,771 – 4,184,879	- - - - - - - -	17960	4,184,771 – 4,184,879	+	3	120	68.39	-1.59	0.77	0.962893
13071	dm3.chrX	4,184,771 – 4,184,879	- - - - - - - -	17961	4,184,771 – 4,184,879	-	3	120	68.39	-1.55	0.74	0.947540
13072	dm3.chrX	4,186,632 – 4,186,682	- - - - - - - -	17962	4,186,632 – 4,186,682	-	5	50	98.80	-1.03	1.00	0.688309
13073	dm3.chrX	4,189,355 – 4,189,426	- - - - - - - -	17963	4,189,355 – 4,189,426	+	6	72	84.95	-2.46	0.65	0.934800
13073	dm3.chrX	4,189,355 – 4,189,426	- - - - - - - -	17964	4,189,355 – 4,189,426	-	6	72	84.95	-2.23	0.65	0.864654
13074	dm3.chrX	4,189,985 – 4,190,104	- - - - - - - -	17965	4,189,985 – 4,190,091	-	6	110	78.39	-1.65	0.60	0.786699
13074	dm3.chrX	4,189,985 – 4,190,104	- - - - - - - -	17966	4,189,996 – 4,190,104	-	5	119	93.03	-2.35	0.88	0.959271
13075	dm3.chrX	4,192,999 – 4,193,068	- - - - - - - -	17967	4,192,999 – 4,193,068	+	6	77	60.14	-1.52	0.42	0.980612
13075	dm3.chrX	4,192,999 – 4,193,068	- - - - - - - -	17968	4,192,999 – 4,193,068	-	6	77	60.14	-0.91	0.47	0.930224
13076	dm3.chrX	4,203,115 – 4,203,227	- - - - - - - -	17969	4,203,115 – 4,203,210	+	8	119	74.67	-2.38	0.58	0.986692
13076	dm3.chrX	4,203,115 – 4,203,227	- - - - - - - -	17970	4,203,129 – 4,203,227	+	8	118	71.61	-1.84	0.54	0.962198
13077	dm3.chrX	4,203,771 – 4,203,865	- - - - - - - -	17971	4,203,771 – 4,203,865	+	5	116	59.73	-2.09	0.28	0.800102
13078	dm3.chrX	4,207,567 – 4,207,618	- - - - - - - -	17972	4,207,567 – 4,207,618	+	4	52	95.15	-1.64	0.99	0.939791
13079	dm3.chrX	4,216,549 – 4,216,640	- - - - - - - -	17973	4,216,549 – 4,216,640	+	5	94	81.03	-1.74	0.67	0.749012
13080	dm3.chrX	4,218,547 – 4,218,676	- - - intron="intron;ID=intron_FBgn0004625:1_FBgn0004625:2;Name=norpA-in;Parent=FBtr0301475;parent_type=mRNA" - - - -	17974	4,218,547 – 4,218,641	-	4	94	95.57	-1.43	0.92	0.643821
13080	dm3.chrX	4,218,547 – 4,218,676		17975	4,218,579 – 4,218,676	+	6	102	77.43	-1.80	0.62	0.909999
13081	dm3.chrX	4,218,693 – 4,218,866	- - - intron="intron;ID=intron_FBgn0004625:1_FBgn0004625:2;Name=norpA-in;Parent=FBtr0301475;parent_type=mRNA" - - - -	17976	4,218,693 – 4,218,803	+	5	110	93.51	-1.79	0.85	0.690540
				17977	4,218,732 – 4,218,828	+	5	98	83.78	-2.40	0.70	0.949005
				17978	4,218,732 – 4,218,828	-	5	98	83.78	-1.54	0.80	0.782535
				17979	4,218,764 – 4,218,866	+	5	105	81.07	-0.90	0.85	0.567026
				17980	4,218,764 – 4,218,866	-	5	105	81.07	-1.14	0.84	0.727710
13082	dm3.chrX	4,224,573 – 4,224,684	- - - - - - - -	17981	4,224,573 – 4,224,684	+	6	111	81.02	-1.73	0.59	0.639235
13083	dm3.chrX	4,232,685 – 4,232,836	- - - intron="intron;ID=intron_FBgn0004625:3_FBgn0004625:5;Name=norpA-in;Parent=FBtr0100671,FBtr0070650,FBtr0301475;parent_type=mRNA" - - - -	17982	4,232,685 – 4,232,799	-	6	114	70.69	-1.19	0.67	0.940355
				17983	4,232,725 – 4,232,836	-	5	112	70.35	-0.99	0.64	0.758177
				17984	4,232,725 – 4,232,836	-	5	112	70.35	-0.99	0.64	0.758177
13084	dm3.chrX	4,241,907 – 4,241,986	- - - intron="intron;ID=intron_FBgn0004625:3_FBgn0004625:5;Name=norpA-in;Parent=FBtr0100671,FBtr0070650,FBtr0301475;parent_type=mRNA" - - - -	17985	4,241,907 – 4,241,986	-	7	85	72.42	-2.79	0.49	0.997412
13085	dm3.chrX	4,242,874 – 4,242,976	- - - intron="intron;ID=intron_FBgn0004625:4_FBgn0004625:5;Name=norpA-in;Parent=FBtr0100670,FBtr0070651;parent_type=mRNA" - - - -	17986	4,242,874 – 4,242,976	+	6	117	68.12	-0.88	0.53	0.544356
13086	dm3.chrX	4,258,120 – 4,258,199	- - - - - - - -	17987	4,258,120 – 4,258,199	+	5	94	69.59	-1.08	0.55	0.545666
13087	dm3.chrX	4,260,155 – 4,260,356	FBnoncoding="pre_miRNA;ID=FBtr0304270;Name=mir-303-RM;Parent=FBgn0262390;Alias=CR42924-RM;Dbxref=FlyBase_Annotation_IDs:CR42924-RM,miRBase:MI0000409" - - - - - - "mirBase_v16=dme-mir-303\|2.9e-34"	17988	4,260,155 – 4,260,212	-	3	64	80.00	-1.19	0.82	0.529382
				17989	4,260,212 – 4,260,356	+	5	147	62.77	-1.65	0.36	0.830615
				17990	4,260,212 – 4,260,356	-	5	147	62.77	-2.04	0.32	0.896470
13088	dm3.chrX	4,262,289 – 4,262,456	FBnoncoding="pre_miRNA;ID=FBtr0304309;Name=mir-983-1-RM;Parent=FBgn0262235;Alias=CR42942-RM;Dbxref=FlyBase_Annotation_IDs:CR42942-RM,miRBase:MI0005840" - - intron="intron;ID=intron_CG3626:1_CG3626:2;Name=CG3626-in;Parent=FBtr0070652;parent_type=mRNA" "Rfam_10.0=RF00949;mir-983;AC023742.4/21942-22040\|6.3e-50" - - "mirBase_v16=dme-mir-983-2\|1.2e-51"	17991	4,262,289 – 4,262,456	-	5	172	63.34	-2.22	0.41	0.990117
13089	dm3.chrX	4,265,581 – 4,265,676	- - - - - - - -	17992	4,265,581 – 4,265,676	+	11	112	79.49	-1.38	0.61	0.603265
13090	dm3.chrX	4,274,930 – 4,275,025	- - - - - - - -	17993	4,274,930 – 4,275,025	+	7	101	75.38	-1.00	0.66	0.578014
13091	dm3.chrX	4,278,856 – 4,278,913	- - - - - - - -	17994	4,278,856 – 4,278,913	+	4	57	92.90	-2.22	0.87	0.924653
13092	dm3.chrX	4,279,851 – 4,279,983	- - - - - - - -	17995	4,279,851 – 4,279,962	-	6	115	79.44	-1.07	0.78	0.728867
13092	dm3.chrX	4,279,851 – 4,279,983	- - - - - - - -	17996	4,279,890 – 4,279,983	-	6	105	70.70	-0.82	0.64	0.686813
13093	dm3.chrX	4,288,736 – 4,288,824	- - - - - - - -	17997	4,288,736 – 4,288,824	-	12	104	73.75	-2.11	0.48	0.957944
13094	dm3.chrX	4,289,189 – 4,289,301	- - - - - - - -	17998	4,289,189 – 4,289,301	-	5	115	81.19	-2.15	0.57	0.748874
13095	dm3.chrX	4,289,826 – 4,289,931	- - - - - - - -	17999	4,289,826 – 4,289,926	+	12	119	81.73	-3.20	0.44	0.975895
				18000	4,289,826 – 4,289,926	-	12	119	81.73	-3.06	0.28	0.581477
				18001	4,289,827 – 4,289,931	+	12	119	81.40	-3.01	0.43	0.955078
13096	dm3.chrX	4,291,975 – 4,292,032	- - - - - - - -	18002	4,291,975 – 4,292,032	+	6	58	75.76	-2.09	0.57	0.973444
13097	dm3.chrX	4,298,430 – 4,298,495	- - - - - - - -	18003	4,298,430 – 4,298,495	+	7	73	89.49	-3.26	0.88	0.997000
13097	dm3.chrX	4,298,430 – 4,298,495	- - - - - - - -	18004	4,298,430 – 4,298,495	-	7	73	89.49	-1.76	0.93	0.944753
13098	dm3.chrX	4,300,828 – 4,300,888	- - - - - - - -	18005	4,300,828 – 4,300,888	+	11	72	83.18	-1.47	0.79	0.829706
13099	dm3.chrX	4,303,999 – 4,304,099	- - - - - - - -	18006	4,303,999 – 4,304,099	+	3	100	94.54	-2.05	1.00	0.981979
13099	dm3.chrX	4,303,999 – 4,304,099	- - - - - - - -	18007	4,303,999 – 4,304,099	-	3	100	94.54	-0.86	0.98	0.534263
13100	dm3.chrX	4,306,559 – 4,306,653	- - - - - - - -	18008	4,306,559 – 4,306,653	-	5	108	88.36	-1.42	0.92	0.843240
13101	dm3.chrX	4,306,883 – 4,306,995	- - - - - - - -	18009	4,306,883 – 4,306,995	-	5	120	89.63	-2.04	0.70	0.507979
13102	dm3.chrX	4,310,646 – 4,310,756	- - - intron="intron;ID=intron_FBgn0000179:2_FBgn0000179:4;Name=bi-in;Parent=FBtr0300608;parent_type=mRNA" - - - -	18010	4,310,646 – 4,310,756	-	8	128	76.73	-0.70	0.76	0.515939
13103	dm3.chrX	4,313,635 – 4,313,748	- - - intron="intron;ID=intron_FBgn0000179:2_FBgn0000179:4;Name=bi-in;Parent=FBtr0300608;parent_type=mRNA" - - - -	18011	4,313,635 – 4,313,748	-	6	115	82.30	-2.58	0.50	0.872054
13104	dm3.chrX	4,322,504 – 4,322,623	- - CDS="CDS;ID=CDS_FBgn0000179:4_947;Name=bi-cds;Parent=FBtr0070672,FBtr0300608,FBtr0300609;parent_type=mRNA" - - - - -	18012	4,322,504 – 4,322,623	-	12	120	91.70	-1.84	0.76	0.596210
13105	dm3.chrX	4,329,790 – 4,329,884	- - - intron="intron;ID=intron_FBgn0000179:4_FBgn0000179:5;Name=bi-in;Parent=FBtr0070672,FBtr0300608,FBtr0300609;parent_type=mRNA" - - - -	18013	4,329,790 – 4,329,884	-	12	119	80.52	-1.20	0.73	0.665367
13106	dm3.chrX	4,349,708 – 4,349,830	- - - intron="intron;ID=intron_FBgn0000179:6_FBgn0000179:7;Name=bi-in;Parent=FBtr0070672,FBtr0300608,FBtr0300609;parent_type=mRNA" - - - -	18014	4,349,708 – 4,349,830	+	10	148	77.67	-3.53	0.68	0.999491
13106	dm3.chrX	4,349,708 – 4,349,830		18015	4,349,708 – 4,349,830	-	10	148	77.67	-1.41	0.63	0.763063
13107	dm3.chrX	4,357,667 – 4,357,761	- - - intron="intron;ID=intron_FBgn0000179:6_FBgn0000179:7;Name=bi-in;Parent=FBtr0070672,FBtr0300608,FBtr0300609;parent_type=mRNA" - - - -	18016	4,357,667 – 4,357,761	+	6	104	74.32	-0.98	0.62	0.560252
13108	dm3.chrX	4,366,792 – 4,366,899	- - - intron="intron;ID=intron_FBgn0000179:6_FBgn0000179:7;Name=bi-in;Parent=FBtr0070672,FBtr0300608,FBtr0300609;parent_type=mRNA" - - - -	18017	4,366,792 – 4,366,899	+	7	111	66.36	-0.52	0.47	0.500000
13108	dm3.chrX	4,366,792 – 4,366,899		18018	4,366,792 – 4,366,899	-	7	111	66.36	-1.86	0.35	0.935354
13109	dm3.chrX	4,384,509 – 4,384,599	- - - - - - - -	18019	4,384,509 – 4,384,599	+	10	103	75.69	-1.55	0.68	0.948826
13110	dm3.chrX	4,387,664 – 4,387,764	- - - - - - - -	18020	4,387,664 – 4,387,764	-	5	100	67.02	-1.33	0.57	0.927753
13111	dm3.chrX	4,388,807 – 4,388,930	- - - - - - - -	18021	4,388,807 – 4,388,930	-	5	139	80.47	-1.18	0.79	0.603682
13112	dm3.chrX	4,391,211 – 4,391,308	- - - - - - - -	18022	4,391,211 – 4,391,308	+	8	107	73.09	-2.83	0.29	0.886502
13113	dm3.chrX	4,394,395 – 4,394,457	- - - - - - - -	18023	4,394,395 – 4,394,457	+	11	62	96.89	-1.43	0.98	0.869475
13114	dm3.chrX	4,399,882 – 4,399,982	- - - - - - - -	18024	4,399,882 – 4,399,982	+	11	103	84.86	-2.18	0.65	0.888418
13114	dm3.chrX	4,399,882 – 4,399,982	- - - - - - - -	18025	4,399,882 – 4,399,982	-	11	103	84.86	-1.60	0.66	0.508091
13115	dm3.chrX	4,404,391 – 4,404,481	- - - - - - - -	18026	4,404,391 – 4,404,481	+	12	110	76.00	-1.06	0.62	0.704871
13116	dm3.chrX	4,405,198 – 4,405,304	- - - - - - - -	18027	4,405,198 – 4,405,304	-	6	111	75.60	-1.57	0.52	0.742022
13117	dm3.chrX	4,416,411 – 4,416,503	- - - - - - - -	18028	4,416,411 – 4,416,503	-	3	102	79.87	-1.04	0.90	0.713957
13118	dm3.chrX	4,420,900 – 4,420,988	- - - - - - - -	18029	4,420,900 – 4,420,988	+	5	89	64.23	-1.09	0.50	0.797946
13118	dm3.chrX	4,420,900 – 4,420,988	- - - - - - - -	18030	4,420,900 – 4,420,988	-	5	89	64.23	-0.98	0.57	0.886270
13119	dm3.chrX	4,421,474 – 4,421,586	- - - - - - - -	18031	4,421,474 – 4,421,586	-	5	120	87.24	-2.06	0.66	0.532014
13120	dm3.chrX	4,424,353 – 4,424,471	- - - - - - - -	18032	4,424,353 – 4,424,471	+	5	120	84.59	-2.07	0.61	0.559258
13121	dm3.chrX	4,425,021 – 4,425,197	- - - intron="intron;ID=intron_CG3556:1_CG3556:2;Name=CG3556-in;Parent=FBtr0070674;parent_type=mRNA" - - - -	18033	4,425,021 – 4,425,115	-	6	102	77.50	-1.51	0.58	0.603208
13121	dm3.chrX	4,425,021 – 4,425,197		18034	4,425,115 – 4,425,197	+	5	82	97.07	-1.37	0.96	0.759749
13122	dm3.chrX	4,428,229 – 4,428,339	- - - - - - - -	18035	4,428,229 – 4,428,339	+	6	111	80.47	-1.71	0.56	0.608115
13122	dm3.chrX	4,428,229 – 4,428,339	- - - - - - - -	18036	4,428,229 – 4,428,339	-	6	111	80.47	-2.55	0.49	0.928176
13123	dm3.chrX	4,440,175 – 4,440,228	- - - - - - - -	18037	4,440,175 – 4,440,228	-	6	64	75.53	-1.17	0.64	0.548666
13124	dm3.chrX	4,457,068 – 4,457,167	- - - - - - - -	18038	4,457,068 – 4,457,167	-	5	99	97.96	-1.84	0.88	0.667739
13125	dm3.chrX	4,457,307 – 4,457,403	- - - - - - - -	18039	4,457,307 – 4,457,403	+	6	120	71.17	-1.85	0.49	0.856271
13125	dm3.chrX	4,457,307 – 4,457,403	- - - - - - - -	18040	4,457,307 – 4,457,403	-	6	120	71.17	-1.60	0.57	0.887892
13126	dm3.chrX	4,459,620 – 4,459,687	- - - - - - - -	18041	4,459,620 – 4,459,687	+	8	82	68.76	-1.18	0.46	0.577218
13127	dm3.chrX	4,466,168 – 4,466,227	- - - - - - - -	18042	4,466,168 – 4,466,227	+	5	66	90.30	-1.45	0.94	0.859073
13128	dm3.chrX	4,466,716 – 4,466,809	- - - - - - - -	18043	4,466,716 – 4,466,809	+	8	94	88.42	-2.86	0.78	0.989370
13129	dm3.chrX	4,467,226 – 4,467,369	- - - - - - - -	18044	4,467,226 – 4,467,369	+	6	148	81.67	-1.78	0.56	0.500000
13130	dm3.chrX	4,470,308 – 4,470,404	- - - - - - - -	18045	4,470,308 – 4,470,404	+	8	101	54.98	-1.35	0.33	0.873692
13131	dm3.chrX	4,474,707 – 4,474,802	- - - - - - - -	18046	4,474,707 – 4,474,802	-	6	95	80.95	-1.67	0.58	0.505834
13132	dm3.chrX	4,481,881 – 4,481,971	- - - - - - - -	18047	4,481,881 – 4,481,971	+	9	113	62.95	-1.70	0.32	0.786420
13133	dm3.chrX	4,500,547 – 4,500,637	- - - - - - - -	18048	4,500,547 – 4,500,637	+	5	106	84.23	-2.30	0.69	0.914993
13134	dm3.chrX	4,504,623 – 4,504,679	- - - - - - - -	18049	4,504,623 – 4,504,679	-	10	56	95.72	-0.81	1.00	0.625779
13135	dm3.chrX	4,522,801 – 4,522,886	- - CDS="CDS;ID=CDS_FBgn0025387:4_935;Name=CG12184-cds;Parent=FBtr0070696;parent_type=mRNA" - - - - -	18050	4,522,801 – 4,522,886	+	4	88	70.91	-1.64	0.66	0.951350
13135	dm3.chrX	4,522,801 – 4,522,886		18051	4,522,801 – 4,522,886	-	4	88	70.91	-2.09	0.54	0.957905
13136	dm3.chrX	4,529,669 – 4,529,763	- - CDS="CDS;ID=CDS_FBgn0025388:6_969;Name=CG12179-cds;Parent=FBtr0300754,FBtr0300755;parent_type=mRNA" - - - - -	18052	4,529,669 – 4,529,763	+	7	94	68.70	-0.51	0.60	0.607926
13137	dm3.chrX	4,578,369 – 4,578,422	- - - intron="intron;ID=intron_CG2984:1_CG2984:2;Name=Pp2C1-in;Parent=FBtr0070685;parent_type=mRNA" - - - -	18053	4,578,369 – 4,578,422	+	5	53	94.72	-3.83	0.94	0.998324
13137	dm3.chrX	4,578,369 – 4,578,422		18054	4,578,369 – 4,578,422	-	5	53	94.72	-4.02	0.99	0.998901
13138	dm3.chrX	4,582,070 – 4,582,154	- - - intron="intron;ID=intron_FBgn0011760:1_FBgn0011760:5;Name=ctp-in;Parent=FBtr0070704;parent_type=mRNA" - - - -	18055	4,582,070 – 4,582,154	-	12	96	68.25	-0.88	0.50	0.830828
13139	dm3.chrX	4,593,851 – 4,593,917	- - - - - - - -	18056	4,593,851 – 4,593,917	-	4	69	90.58	-2.11	0.90	0.955008
13140	dm3.chrX	4,598,187 – 4,598,303	- - - - - - - -	18057	4,598,187 – 4,598,303	+	13	117	67.37	-0.31	0.51	0.657697
13141	dm3.chrX	4,627,380 – 4,627,430	- - - - - - - -	18058	4,627,380 – 4,627,430	+	4	50	57.00	-0.73	0.47	0.794274
13141	dm3.chrX	4,627,380 – 4,627,430	- - - - - - - -	18059	4,627,380 – 4,627,430	-	4	50	57.00	-1.02	0.37	0.580299
13142	dm3.chrX	4,635,275 – 4,635,368	- - - - - - - -	18060	4,635,275 – 4,635,368	+	7	108	77.07	-1.24	0.64	0.513726
13142	dm3.chrX	4,635,275 – 4,635,368	- - - - - - - -	18061	4,635,275 – 4,635,368	-	7	108	77.07	-2.24	0.59	0.956193
13143	dm3.chrX	4,638,621 – 4,638,770	- - - - - - - -	18062	4,638,621 – 4,638,735	+	11	120	95.57	-1.77	0.91	0.844667
13143	dm3.chrX	4,638,621 – 4,638,770	- - - - - - - -	18063	4,638,655 – 4,638,770	+	11	125	81.34	-2.22	0.87	0.992837
13144	dm3.chrX	4,639,426 – 4,639,587	- - - - - - - -	18064	4,639,426 – 4,639,587	-	8	169	76.85	-1.72	0.66	0.964172
13145	dm3.chrX	4,643,470 – 4,643,574	- - - - - - - -	18065	4,643,470 – 4,643,574	+	5	115	70.97	-2.57	0.50	0.990874
13146	dm3.chrX	4,661,043 – 4,661,130	- - - - - - - -	18066	4,661,043 – 4,661,130	+	12	87	97.25	-2.47	0.96	0.984910
13146	dm3.chrX	4,661,043 – 4,661,130	- - - - - - - -	18067	4,661,043 – 4,661,130	-	12	87	97.25	-1.97	0.93	0.913668
13147	dm3.chrX	4,668,303 – 4,668,400	- - - - - - - -	18068	4,668,303 – 4,668,400	+	6	101	62.28	-2.07	0.22	0.611249
13148	dm3.chrX	4,673,735 – 4,673,830	- - - - - - - -	18069	4,673,735 – 4,673,830	+	6	107	81.53	-1.71	0.70	0.809748
13148	dm3.chrX	4,673,735 – 4,673,830	- - - - - - - -	18070	4,673,735 – 4,673,830	-	6	107	81.53	-2.25	0.72	0.970000
13149	dm3.chrX	4,673,922 – 4,673,989	- - - - - - - -	18071	4,673,922 – 4,673,989	-	3	67	79.79	-1.50	0.86	0.841924
13150	dm3.chrX	4,679,787 – 4,679,951	- - - - - - - -	18072	4,679,787 – 4,679,886	+	5	110	92.97	-1.84	0.80	0.534596
				18073	4,679,787 – 4,679,886	-	5	110	92.97	-3.15	0.84	0.990284
				18074	4,679,851 – 4,679,951	+	7	119	80.90	-2.01	0.55	0.578236
13151	dm3.chrX	4,683,997 – 4,684,051	- - - - - - - -	18075	4,683,997 – 4,684,051	-	6	63	66.00	-0.86	0.52	0.587401
13152	dm3.chrX	4,687,118 – 4,687,212	- - - - - - - -	18076	4,687,118 – 4,687,212	+	10	120	85.53	-2.20	0.63	0.740043
13153	dm3.chrX	4,687,497 – 4,687,607	- - - - - - - -	18077	4,687,497 – 4,687,607	-	10	114	78.36	-1.69	0.61	0.862133
13154	dm3.chrX	4,688,837 – 4,688,928	- - - - - - - -	18078	4,688,837 – 4,688,928	-	6	102	65.10	-1.65	0.34	0.701318
13155	dm3.chrX	4,703,917 – 4,704,011	- - - - - - - -	18079	4,703,917 – 4,704,011	+	7	96	63.19	-1.97	0.28	0.623666
13156	dm3.chrX	4,712,357 – 4,712,537	- - - - - - - -	18080	4,712,357 – 4,712,462	+	5	124	71.20	-1.58	0.55	0.888711
				18081	4,712,357 – 4,712,462	-	5	124	71.20	-2.28	0.77	0.997439
				18082	4,712,387 – 4,712,502	+	5	115	85.71	-2.19	0.68	0.815158
				18083	4,712,427 – 4,712,537	+	5	115	90.59	-1.63	0.81	0.533387
13157	dm3.chrX	4,714,897 – 4,714,988	- - - - - - - -	18084	4,714,897 – 4,714,988	+	7	104	63.36	-0.97	0.41	0.710113
13158	dm3.chrX	4,719,065 – 4,719,169	- - - - - - - -	18085	4,719,065 – 4,719,169	+	7	106	66.85	-1.32	0.52	0.974707
13159	dm3.chrX	4,719,615 – 4,719,666	- - - - - - - -	18086	4,719,615 – 4,719,666	-	3	51	90.20	-0.59	1.00	0.537219
13160	dm3.chrX	4,721,369 – 4,721,467	- - - - - - - -	18087	4,721,369 – 4,721,467	-	5	102	80.92	-1.98	0.92	0.986347
13161	dm3.chrX	4,732,696 – 4,732,753	- - - - - - - -	18088	4,732,696 – 4,732,753	+	4	57	95.61	-1.80	0.98	0.950104
13162	dm3.chrX	4,744,557 – 4,744,659	- - - - - - - -	18089	4,744,557 – 4,744,659	-	7	113	57.46	-1.70	0.24	0.684411
13163	dm3.chrX	4,747,545 – 4,747,629	- - - - - - - -	18090	4,747,545 – 4,747,629	+	5	84	92.62	-1.23	0.91	0.573818
13164	dm3.chrX	4,755,196 – 4,755,288	- - - - - - - -	18091	4,755,196 – 4,755,288	+	5	113	70.57	-1.36	0.59	0.817182
13164	dm3.chrX	4,755,196 – 4,755,288	- - - - - - - -	18092	4,755,196 – 4,755,288	-	5	113	70.57	-2.36	0.40	0.894217
13165	dm3.chrX	4,759,334 – 4,759,439	- - - - - - - -	18093	4,759,334 – 4,759,439	-	10	116	89.67	-2.17	0.66	0.600762
13166	dm3.chrX	4,780,643 – 4,780,796	- - - - - - - -	18094	4,780,643 – 4,780,697	-	6	61	76.09	-2.41	0.78	0.995915
13166	dm3.chrX	4,780,643 – 4,780,796	- - - - - - - -	18095	4,780,697 – 4,780,796	-	5	118	57.97	-1.81	0.32	0.888206
13167	dm3.chrX	4,781,163 – 4,781,257	- - - - - - - -	18096	4,781,163 – 4,781,257	+	5	100	87.45	-2.81	0.56	0.796264
13167	dm3.chrX	4,781,163 – 4,781,257	- - - - - - - -	18097	4,781,163 – 4,781,257	-	5	100	87.45	-2.80	0.62	0.895959
13168	dm3.chrX	4,799,076 – 4,799,170	- - CDS="CDS;ID=CDS_FBgn0260971:8_980;Name=CG42594-cds;Parent=FBtr0301750;parent_type=mRNA" - - - - -	18098	4,799,076 – 4,799,170	-	6	95	60.65	-0.26	0.59	0.876446
13169	dm3.chrX	4,799,841 – 4,799,934	- - - - - - - -	18099	4,799,841 – 4,799,934	+	6	95	76.63	-1.79	0.65	0.955640
13170	dm3.chrX	4,805,564 – 4,805,679	- - - intron="intron;ID=intron_FBgn0052772:2_FBgn0052772:3;Name=CG32772-in;Parent=FBtr0300997;parent_type=mRNA" - - - -	18100	4,805,564 – 4,805,679	+	6	118	52.83	-1.37	0.27	0.767899
13171	dm3.chrX	4,808,644 – 4,808,708	- - - - - - - -	18101	4,808,644 – 4,808,708	+	5	64	90.62	-0.99	0.98	0.772266
13172	dm3.chrX	4,815,869 – 4,816,006	- - - - - - - -	18102	4,815,869 – 4,816,006	-	5	160	51.17	-2.08	0.22	0.884381
13173	dm3.chrX	4,816,467 – 4,816,572	- - - - - - - -	18103	4,816,467 – 4,816,572	+	3	106	77.67	-3.86	0.70	0.999108
13173	dm3.chrX	4,816,467 – 4,816,572	- - - - - - - -	18104	4,816,467 – 4,816,572	-	3	106	77.67	-3.81	0.76	0.999158
13174	dm3.chrX	4,816,729 – 4,816,862	- - - - - - - -	18105	4,816,729 – 4,816,848	+	3	120	88.33	-4.34	0.89	0.998995
				18106	4,816,729 – 4,816,848	-	3	120	88.33	-4.63	0.91	0.999113
				18107	4,816,743 – 4,816,862	+	3	120	88.33	-6.08	0.92	0.998164
				18108	4,816,743 – 4,816,862	-	3	120	88.33	-6.73	0.92	0.995946
13175	dm3.chrX	4,817,290 – 4,817,449	- - - - - - - -	18109	4,817,290 – 4,817,449	+	3	160	87.50	-3.74	0.90	0.998458
13175	dm3.chrX	4,817,290 – 4,817,449	- - - - - - - -	18110	4,817,290 – 4,817,449	-	3	160	87.50	-3.88	0.87	0.998498
13176	dm3.chrX	4,817,572 – 4,817,730	- - - - - - - -	18111	4,817,572 – 4,817,730	+	3	159	67.92	-3.63	0.83	0.999482
13176	dm3.chrX	4,817,572 – 4,817,730	- - - - - - - -	18112	4,817,572 – 4,817,730	-	3	159	67.92	-4.29	0.75	0.999779
13177	dm3.chrX	4,817,857 – 4,818,021	- - - - - - - -	18113	4,817,857 – 4,818,021	+	3	165	64.85	-3.69	0.83	0.999594
13177	dm3.chrX	4,817,857 – 4,818,021	- - - - - - - -	18114	4,817,857 – 4,818,021	-	3	165	64.85	-4.26	0.72	0.999856
13178	dm3.chrX	4,818,155 – 4,818,277	- - - - - - - -	18115	4,818,155 – 4,818,277	+	3	123	72.01	-2.14	0.74	0.983809
13178	dm3.chrX	4,818,155 – 4,818,277	- - - - - - - -	18116	4,818,155 – 4,818,277	-	3	123	72.01	-2.62	0.71	0.994825
13179	dm3.chrX	4,818,415 – 4,818,534	- - - - - - - -	18117	4,818,415 – 4,818,534	+	3	120	88.33	-6.08	0.92	0.998164
13179	dm3.chrX	4,818,415 – 4,818,534	- - - - - - - -	18118	4,818,415 – 4,818,534	-	3	120	88.33	-6.73	0.92	0.995946
13180	dm3.chrX	4,818,675 – 4,818,834	- - - - - - - -	18119	4,818,675 – 4,818,794	+	3	120	73.33	-2.37	0.77	0.991174
				18120	4,818,675 – 4,818,794	-	3	120	73.33	-2.41	0.74	0.990394
				18121	4,818,714 – 4,818,834	+	3	120	72.78	-3.78	0.87	0.999283
				18122	4,818,714 – 4,818,834	-	3	120	72.78	-4.16	0.83	0.999518
13181	dm3.chrX	4,818,957 – 4,819,108	- - - - - - - -	18123	4,818,957 – 4,819,068	+	3	120	70.17	-2.35	0.66	0.987379
				18124	4,818,957 – 4,819,068	-	3	120	70.17	-1.81	0.69	0.946241
				18125	4,818,989 – 4,819,108	+	3	120	72.22	-4.15	0.88	0.999369
				18126	4,818,989 – 4,819,108	-	3	120	72.22	-5.06	0.82	0.999570
13182	dm3.chrX	4,819,249 – 4,819,378	- - - - - - - -	18127	4,819,249 – 4,819,378	+	3	130	88.72	-4.28	0.88	0.998908
13182	dm3.chrX	4,819,249 – 4,819,378	- - - - - - - -	18128	4,819,249 – 4,819,378	-	3	130	88.72	-4.78	0.90	0.999121
13183	dm3.chrX	4,819,539 – 4,819,628	- - - - - - - -	18129	4,819,539 – 4,819,628	+	3	91	87.50	-2.28	0.81	0.920600
13183	dm3.chrX	4,819,539 – 4,819,628	- - - - - - - -	18130	4,819,539 – 4,819,628	-	3	91	87.50	-1.83	0.82	0.754990
13184	dm3.chrX	4,819,781 – 4,819,939	- - - - - - - -	18131	4,819,781 – 4,819,899	-	3	120	86.55	-2.12	0.80	0.874316
				18132	4,819,821 – 4,819,939	+	3	120	88.30	-3.16	0.83	0.992794
				18133	4,819,821 – 4,819,939	-	3	120	88.30	-3.72	0.83	0.997506
13185	dm3.chrX	4,820,048 – 4,820,207	- - - - - - - -	18134	4,820,048 – 4,820,167	+	3	120	88.27	-2.27	0.85	0.944430
				18135	4,820,048 – 4,820,167	-	3	120	88.27	-2.26	0.88	0.962579
				18136	4,820,088 – 4,820,207	+	3	120	87.22	-3.91	0.81	0.998148
				18137	4,820,088 – 4,820,207	-	3	120	87.22	-3.76	0.89	0.998452
13186	dm3.chrX	4,820,350 – 4,820,469	- - - - - - - -	18138	4,820,350 – 4,820,469	+	3	120	89.44	-4.62	0.89	0.999059
13186	dm3.chrX	4,820,350 – 4,820,469	- - - - - - - -	18139	4,820,350 – 4,820,469	-	3	120	89.44	-5.55	0.89	0.998961
13187	dm3.chrX	4,826,158 – 4,826,220	- - - intron="intron;ID=intron_FBgn0029738:7_FBgn0029738:6;Name=CG4068-in;Parent=FBtr0112950;parent_type=mRNA" - - - -	18140	4,826,158 – 4,826,220	+	3	65	88.54	-3.72	0.84	0.997560
13188	dm3.chrX	4,826,754 – 4,826,823	- - - - - - - -	18141	4,826,754 – 4,826,823	+	4	72	66.67	-2.96	0.60	0.999488
13188	dm3.chrX	4,826,754 – 4,826,823	- - - - - - - -	18142	4,826,754 – 4,826,823	-	4	72	66.67	-2.30	0.46	0.983626
13189	dm3.chrX	4,827,796 – 4,827,863	- - - - - - - -	18143	4,827,796 – 4,827,863	+	3	70	87.44	-3.11	0.84	0.993313
13190	dm3.chrX	4,835,154 – 4,835,247	- - - intron="intron;ID=intron_FBgn0004368:6_FBgn0004368:7;Name=Ptp4E-in;Parent=FBtr0070724,FBtr0070725,FBtr0301793,FBtr0301794,FBtr0301796;parent_type=mRNA" - - - -	18144	4,835,154 – 4,835,247	+	7	104	66.29	-0.47	0.56	0.587277
13191	dm3.chrX	4,838,679 – 4,838,773	- - - intron="intron;ID=intron_FBgn0004368:6_FBgn0004368:7;Name=Ptp4E-in;Parent=FBtr0070724,FBtr0070725,FBtr0301793,FBtr0301794,FBtr0301796;parent_type=mRNA" - - - -	18145	4,838,679 – 4,838,773	+	5	94	89.19	-2.41	0.73	0.866805
13192	dm3.chrX	4,839,028 – 4,839,106	- - - intron="intron;ID=intron_FBgn0004368:6_FBgn0004368:7;Name=Ptp4E-in;Parent=FBtr0070724,FBtr0070725,FBtr0301793,FBtr0301794,FBtr0301796;parent_type=mRNA" - - - -	18146	4,839,028 – 4,839,106	-	6	78	80.43	-1.76	0.63	0.813145
13193	dm3.chrX	4,839,709 – 4,839,870	- - - intron="intron;ID=intron_FBgn0004368:6_FBgn0004368:7;Name=Ptp4E-in;Parent=FBtr0070724,FBtr0070725,FBtr0301793,FBtr0301794,FBtr0301796;parent_type=mRNA" - - - -	18147	4,839,709 – 4,839,870	+	4	163	82.93	-2.41	0.68	0.937131
13193	dm3.chrX	4,839,709 – 4,839,870		18148	4,839,709 – 4,839,870	-	4	163	82.93	-2.68	0.71	0.979550
13194	dm3.chrX	4,860,567 – 4,860,690	- - - - - - - -	18149	4,860,567 – 4,860,662	+	5	98	86.33	-2.71	0.90	0.994202
				18150	4,860,600 – 4,860,690	+	6	116	80.48	-2.27	0.60	0.879277
				18151	4,860,600 – 4,860,690	-	6	116	80.48	-2.30	0.60	0.890408
13195	dm3.chrX	4,868,002 – 4,868,093	- - - - - - - -	18152	4,868,002 – 4,868,093	+	7	109	64.30	-2.11	0.26	0.682767
13196	dm3.chrX	4,868,790 – 4,868,883	- - - - - - - -	18153	4,868,790 – 4,868,883	-	8	97	85.94	-2.07	0.61	0.622763
13197	dm3.chrX	4,873,382 – 4,873,487	- - - - - - - -	18154	4,873,382 – 4,873,487	+	3	105	84.90	-0.92	0.95	0.648743
13197	dm3.chrX	4,873,382 – 4,873,487	- - - - - - - -	18155	4,873,382 – 4,873,487	-	3	105	84.90	-1.96	0.90	0.953166
13198	dm3.chrX	4,881,084 – 4,881,176	- - - - - - - -	18156	4,881,084 – 4,881,176	-	8	97	67.66	-1.30	0.54	0.963810
13199	dm3.chrX	4,883,581 – 4,883,675	- - - - - - - -	18157	4,883,581 – 4,883,675	+	6	110	85.38	-2.14	0.62	0.623475
13199	dm3.chrX	4,883,581 – 4,883,675	- - - - - - - -	18158	4,883,581 – 4,883,675	-	6	110	85.38	-1.79	0.73	0.688341
13200	dm3.chrX	4,889,572 – 4,889,651	- - - - - - - -	18159	4,889,572 – 4,889,651	-	4	90	56.61	-0.76	0.52	0.831622
13201	dm3.chrX	4,913,959 – 4,914,058	- - - - - - - -	18160	4,913,959 – 4,914,058	-	5	99	72.25	-1.94	0.42	0.533125
13202	dm3.chrX	4,921,298 – 4,921,351	- - - - - - - -	18161	4,921,298 – 4,921,351	-	3	68	61.38	-1.36	0.72	0.957292
13203	dm3.chrX	4,942,434 – 4,942,528	- - - - - - - -	18162	4,942,434 – 4,942,528	+	4	94	93.96	-2.02	0.83	0.737405
13204	dm3.chrX	4,946,975 – 4,947,058	- - - intron="intron;ID=intron_FBgn0003028:1_FBgn0003028:5;Name=ovo-in;Parent=FBtr0070738,FBtr0301914;parent_type=mRNA" - - - -	18163	4,946,975 – 4,947,058	+	6	83	73.66	-2.02	0.38	0.559884
13205	dm3.chrX	4,971,549 – 4,971,669	- - CDS="CDS;ID=CDS_FBgn0052767:2_968;Name=CG32767-cds;Parent=FBtr0300994;parent_type=mRNA" - - - - -	18164	4,971,549 – 4,971,669	+	12	120	89.96	-1.30	0.86	0.619639
13206	dm3.chrX	4,987,212 – 4,987,271	- - - intron="intron;ID=intron_FBgn0086911:2_FBgn0086911:3;Name=rg-in;Parent=FBtr0110993,FBtr0290088,FBtr0299589;parent_type=mRNA" - - - -	18165	4,987,212 – 4,987,271	-	5	59	60.99	-0.76	0.71	0.987015
13207	dm3.chrX	5,000,847 – 5,000,949	- - - intron="intron;ID=intron_FBgn0086911:2_FBgn0086911:3;Name=rg-in;Parent=FBtr0110993,FBtr0290088,FBtr0299589;parent_type=mRNA" - - - -	18166	5,000,847 – 5,000,949	+	11	110	69.94	-2.31	0.23	0.697707
13208	dm3.chrX	5,003,897 – 5,004,046	- - - intron="intron;ID=intron_FBgn0086911:2_FBgn0086911:3;Name=rg-in;Parent=FBtr0110993,FBtr0290088,FBtr0299589;parent_type=mRNA" - - - -	18167	5,003,897 – 5,004,006	+	5	109	93.58	-2.03	0.78	0.582641
				18168	5,003,897 – 5,004,006	-	5	109	93.58	-1.98	0.85	0.806993
				18169	5,003,935 – 5,004,046	+	5	111	90.90	-3.18	0.69	0.970412
				18170	5,003,935 – 5,004,046	-	5	111	90.90	-2.67	0.74	0.928958
13209	dm3.chrX	5,010,479 – 5,010,581	- - - intron="intron;ID=intron_FBgn0086911:2_FBgn0086911:3;Name=rg-in;Parent=FBtr0110993,FBtr0290088,FBtr0299589;parent_type=mRNA" - - - -	18171	5,010,479 – 5,010,581	+	6	115	72.91	-1.70	0.51	0.873071
13210	dm3.chrX	5,024,486 – 5,024,593	- - - intron="intron;ID=intron_FBgn0086911:2_FBgn0086911:3;Name=rg-in;Parent=FBtr0110993,FBtr0290088,FBtr0299589;parent_type=mRNA" - - - -	18172	5,024,486 – 5,024,593	+	4	108	82.08	-1.68	0.84	0.903871
13210	dm3.chrX	5,024,486 – 5,024,593		18173	5,024,486 – 5,024,593	-	4	108	82.08	-1.83	0.83	0.930701
13211	dm3.chrX	5,039,815 – 5,039,887	- - - intron="intron;ID=intron_FBgn0086911:2_FBgn0086911:3;Name=rg-in;Parent=FBtr0110993,FBtr0290088,FBtr0299589;parent_type=mRNA" - - - -	18174	5,039,815 – 5,039,887	-	8	79	74.86	-1.52	0.47	0.650537
13212	dm3.chrX	5,041,400 – 5,041,516	- - - intron="intron;ID=intron_FBgn0086911:2_FBgn0086911:3;Name=rg-in;Parent=FBtr0110993,FBtr0290088,FBtr0299589;parent_type=mRNA" - - - -	18175	5,041,400 – 5,041,506	-	8	117	67.85	-1.89	0.33	0.773058
13212	dm3.chrX	5,041,400 – 5,041,516		18176	5,041,412 – 5,041,516	-	8	116	71.32	-1.94	0.40	0.850635
13213	dm3.chrX	5,049,035 – 5,049,087	- - - intron="intron;ID=intron_FBgn0086911:2_FBgn0086911:3;Name=rg-in;Parent=FBtr0110993,FBtr0290088,FBtr0299589;parent_type=mRNA" - - - -	18177	5,049,035 – 5,049,087	+	11	53	94.01	-1.45	0.89	0.662273
13214	dm3.chrX	5,065,977 – 5,066,069	- - - intron="intron;ID=intron_FBgn0029746:1_FBgn0029746:2;Name=CG15465-in;Parent=FBtr0070742;parent_type=mRNA" - - - -	18178	5,065,977 – 5,066,069	-	5	93	62.84	-0.78	0.62	0.930807
13215	dm3.chrX	5,081,620 – 5,081,696	- - - - - - - -	18179	5,081,620 – 5,081,696	+	11	85	70.36	-0.27	0.73	0.684809
13216	dm3.chrX	5,082,096 – 5,082,164	- - - - - - - -	18180	5,082,096 – 5,082,164	-	6	68	81.76	-1.41	0.67	0.556486
13217	dm3.chrX	5,082,559 – 5,082,679	- - - - - - - -	18181	5,082,559 – 5,082,679	+	3	120	65.06	-1.46	0.62	0.821794
13218	dm3.chrX	5,083,530 – 5,083,621	- - - - - - - -	18182	5,083,530 – 5,083,621	+	4	92	54.83	-1.27	0.33	0.610962
13219	dm3.chrX	5,084,235 – 5,084,316	- - - - - - - -	18183	5,084,235 – 5,084,316	-	6	82	79.59	-1.31	0.68	0.648750
13220	dm3.chrX	5,086,903 – 5,086,994	- - - - - - - -	18184	5,086,903 – 5,086,994	+	7	97	79.40	-1.34	0.64	0.623648
13221	dm3.chrX	5,088,654 – 5,088,744	- - - - - - - -	18185	5,088,654 – 5,088,744	+	4	90	70.04	-1.23	0.55	0.557983
13222	dm3.chrX	5,099,584 – 5,099,637	- - - intron="intron;ID=intron_FBgn0086911:3_FBgn0086911:4;Name=rg-in;Parent=FBtr0110993,FBtr0290088,FBtr0299589;parent_type=mRNA" - - - -	18186	5,099,584 – 5,099,637	-	6	59	76.23	-2.22	0.49	0.881498
13223	dm3.chrX	5,122,153 – 5,122,244	- - - intron="intron;ID=intron_FBgn0086911:13_FBgn0086911:14;Name=rg-in;Parent=FBtr0070745,FBtr0110993,FBtr0290088,FBtr0299588;parent_type=mRNA" - - - -	18187	5,122,153 – 5,122,244	+	4	92	88.93	-0.84	1.00	0.775298
13224	dm3.chrX	5,126,494 – 5,126,564	- - - intron="intron;ID=intron_FBgn0086911:16_FBgn0086911:17;Name=rg-in;Parent=FBtr0290088;parent_type=mRNA" - - - -	18188	5,126,494 – 5,126,564	+	6	70	78.00	-1.94	0.57	0.911918
13224	dm3.chrX	5,126,494 – 5,126,564		18189	5,126,494 – 5,126,564	-	6	70	78.00	-2.07	0.56	0.935427
13225	dm3.chrX	5,128,031 – 5,128,143	- - CDS="CDS;ID=CDS_FBgn0086911:20_939;Name=rg-cds;Parent=FBtr0070745;parent_type=mRNA" - - - - -	18190	5,128,031 – 5,128,143	+	14	113	76.36	-1.19	0.52	0.700362
13225	dm3.chrX	5,128,031 – 5,128,143		18191	5,128,031 – 5,128,143	-	14	113	76.36	-1.26	0.49	0.644754
13226	dm3.chrX	5,139,935 – 5,140,027	- - - intron="intron;ID=intron_FBgn0086911:28_FBgn0086911:29;Name=rg-in;Parent=FBtr0299588;parent_type=mRNA" - - - -	18192	5,139,935 – 5,140,027	+	3	92	97.10	-2.03	0.91	0.877653
13227	dm3.chrX	5,171,442 – 5,171,508	- - - - - - - -	18193	5,171,442 – 5,171,508	+	4	66	95.45	-3.63	1.00	0.998594
13227	dm3.chrX	5,171,442 – 5,171,508	- - - - - - - -	18194	5,171,442 – 5,171,508	-	4	66	95.45	-1.64	0.87	0.561637
13228	dm3.chrX	5,182,700 – 5,182,815	- - - - - - - -	18195	5,182,700 – 5,182,815	-	4	119	80.64	-1.76	0.64	0.552467
13229	dm3.chrX	5,193,466 – 5,193,568	- - - intron="intron;ID=intron_FBgn0261803:3_FBgn0261803:4;Name=CG42749-in;Parent=FBtr0303278,FBtr0303279;parent_type=mRNA" - - - -	18196	5,193,466 – 5,193,568	-	4	104	68.25	-2.17	0.48	0.965816
13230	dm3.chrX	5,205,989 – 5,206,118	- - - - - - - -	18197	5,205,989 – 5,206,093	+	5	118	71.05	-1.43	0.63	0.889217
				18198	5,205,989 – 5,206,093	-	5	118	71.05	-1.59	0.50	0.692452
				18199	5,206,014 – 5,206,118	+	5	120	67.63	-1.66	0.55	0.953853
				18200	5,206,014 – 5,206,118	-	5	120	67.63	-1.52	0.46	0.742824
13231	dm3.chrX	5,222,955 – 5,223,046	- - CDS="CDS;ID=CDS_FBgn0029756:2_925;Name=CG3309-cds;Parent=FBtr0070798;parent_type=mRNA" - - - - -	18201	5,222,955 – 5,223,046	-	15	111	60.29	-0.53	0.41	0.734126
13232	dm3.chrX	5,228,679 – 5,228,777	- - - - - - - -	18202	5,228,679 – 5,228,777	-	5	113	65.27	-1.01	0.56	0.852987
13233	dm3.chrX	5,231,915 – 5,232,053	- - - - - - - -	18203	5,231,915 – 5,232,013	+	4	119	71.24	-2.00	0.76	0.989608
13233	dm3.chrX	5,231,915 – 5,232,053	- - - - - - - -	18204	5,231,944 – 5,232,053	+	4	119	85.49	-2.99	0.81	0.993444
13234	dm3.chrX	5,242,627 – 5,242,730	- - - intron="intron;ID=intron_FBgn0029761:2_FBgn0029761:3;Name=SK-in;Parent=FBtr0301950,FBtr0301951,FBtr0301953;parent_type=mRNA" - - - -	18205	5,242,627 – 5,242,730	+	6	106	66.05	-1.63	0.43	0.945237
13234	dm3.chrX	5,242,627 – 5,242,730		18206	5,242,627 – 5,242,730	-	6	106	66.05	-1.49	0.35	0.640586
13235	dm3.chrX	5,244,260 – 5,244,310	- - - intron="intron;ID=intron_FBgn0029761:2_FBgn0029761:3;Name=SK-in;Parent=FBtr0301950,FBtr0301951,FBtr0301953;parent_type=mRNA" - - - -	18207	5,244,260 – 5,244,310	-	3	50	98.67	-0.98	0.98	0.526078
13236	dm3.chrX	5,252,918 – 5,253,033	- - - intron="intron;ID=intron_FBgn0029761:4_FBgn0029761:6;Name=SK-in;Parent=FBtr0301954;parent_type=mRNA" - - - -	18208	5,252,918 – 5,253,033	+	6	132	63.89	-1.93	0.42	0.977068
13236	dm3.chrX	5,252,918 – 5,253,033		18209	5,252,918 – 5,253,033	-	6	132	63.89	-3.27	0.53	0.999885
13237	dm3.chrX	5,255,360 – 5,255,429	- - - intron="intron;ID=intron_FBgn0029761:4_FBgn0029761:6;Name=SK-in;Parent=FBtr0301954;parent_type=mRNA" - - - -	18210	5,255,360 – 5,255,429	-	7	88	60.90	-0.61	0.53	0.771882
13238	dm3.chrX	5,263,239 – 5,263,318	- - - intron="intron;ID=intron_FBgn0029761:5_FBgn0029761:6;Name=SK-in;Parent=FBtr0300467,FBtr0301949,FBtr0301952;parent_type=mRNA" - - - -	18211	5,263,239 – 5,263,318	+	6	83	74.47	-2.59	0.68	0.998018
13238	dm3.chrX	5,263,239 – 5,263,318		18212	5,263,239 – 5,263,318	-	6	83	74.47	-1.43	0.56	0.782150
13239	dm3.chrX	5,269,360 – 5,269,452	- - - intron="intron;ID=intron_FBgn0029761:5_FBgn0029761:6;Name=SK-in;Parent=FBtr0300467,FBtr0301949,FBtr0301952;parent_type=mRNA" - - - -	18213	5,269,360 – 5,269,452	-	5	107	72.86	-1.75	0.77	0.980316
13240	dm3.chrX	5,269,489 – 5,269,602	- - - intron="intron;ID=intron_FBgn0029761:5_FBgn0029761:6;Name=SK-in;Parent=FBtr0300467,FBtr0301949,FBtr0301952;parent_type=mRNA" - - - -	18214	5,269,489 – 5,269,602	-	6	115	71.59	-1.65	0.45	0.680497
13241	dm3.chrX	5,279,230 – 5,279,323	- - - intron="intron;ID=intron_FBgn0029761:11_FBgn0029761:12;Name=SK-in;Parent=FBtr0301949,FBtr0301950,FBtr0301951,FBtr0301952,FBtr0301954;parent_type=mRNA" - - - -	18215	5,279,230 – 5,279,323	+	6	103	81.45	-1.61	0.65	0.596195
13241	dm3.chrX	5,279,230 – 5,279,323		18216	5,279,230 – 5,279,323	-	6	103	81.45	-2.65	0.71	0.989870
13242	dm3.chrX	5,279,861 – 5,280,011	- - - intron="intron;ID=intron_FBgn0029761:11_FBgn0029761:12;Name=SK-in;Parent=FBtr0301949,FBtr0301950,FBtr0301951,FBtr0301952,FBtr0301954;parent_type=mRNA" - - - -	18217	5,279,861 – 5,279,960	+	7	114	68.26	-2.37	0.60	0.998921
				18218	5,279,861 – 5,279,960	-	7	114	68.26	-1.94	0.47	0.980031
				18219	5,279,881 – 5,279,998	+	6	117	85.75	-2.43	0.83	0.985651
				18220	5,279,920 – 5,280,011	+	5	91	99.56	-3.42	1.00	0.997560
13243	dm3.chrX	5,280,522 – 5,280,625	- - - intron="intron;ID=intron_FBgn0029761:11_FBgn0029761:12;Name=SK-in;Parent=FBtr0301949,FBtr0301950,FBtr0301951,FBtr0301952,FBtr0301954;parent_type=mRNA" - - - -	18221	5,280,522 – 5,280,623	-	3	101	89.00	-2.13	0.87	0.935424
13243	dm3.chrX	5,280,522 – 5,280,625		18222	5,280,524 – 5,280,625	-	3	101	88.33	-2.18	0.82	0.896459
13244	dm3.chrX	5,280,675 – 5,280,770	- - - intron="intron;ID=intron_FBgn0029761:11_FBgn0029761:12;Name=SK-in;Parent=FBtr0301949,FBtr0301950,FBtr0301951,FBtr0301952,FBtr0301954;parent_type=mRNA" - - - -	18223	5,280,675 – 5,280,770	+	6	120	62.55	-2.31	0.21	0.538145
13244	dm3.chrX	5,280,675 – 5,280,770		18224	5,280,675 – 5,280,770	-	6	120	62.55	-2.83	0.31	0.988777
13245	dm3.chrX	5,280,919 – 5,281,038	- - - intron="intron;ID=intron_FBgn0029761:11_FBgn0029761:12;Name=SK-in;Parent=FBtr0301949,FBtr0301950,FBtr0301951,FBtr0301952,FBtr0301954;parent_type=mRNA" - - - -	18225	5,280,919 – 5,281,038	+	6	120	77.80	-1.89	0.56	0.873863
13246	dm3.chrX	5,293,641 – 5,293,758	- - CDS="CDS;ID=CDS_FBgn0029761:21_949;Name=SK-cds;Parent=FBtr0300467;parent_type=mRNA" - - - - -	18226	5,293,641 – 5,293,758	+	12	120	97.62	-1.35	0.95	0.699894
13246	dm3.chrX	5,293,641 – 5,293,758		18227	5,293,641 – 5,293,758	-	12	120	97.62	-1.86	0.98	0.951160
13247	dm3.chrX	5,297,004 – 5,297,097	- - - - - - - -	18228	5,297,004 – 5,297,097	+	9	114	76.77	-0.50	0.88	0.594834
13248	dm3.chrX	5,303,157 – 5,303,247	- - - intron="intron;ID=intron_CG3252:1_CG3252:2;Name=NAAT1-in;Parent=FBtr0070797;parent_type=mRNA" - - - -	18229	5,303,157 – 5,303,247	+	5	99	79.39	-2.17	0.62	0.867276
13249	dm3.chrX	5,305,187 – 5,305,285	- - - - - - - -	18230	5,305,187 – 5,305,285	-	4	103	76.18	-1.98	0.58	0.832913
13250	dm3.chrX	5,305,419 – 5,305,517	- - - - - - - -	18231	5,305,419 – 5,305,517	-	4	111	78.65	-1.48	0.69	0.599902
13251	dm3.chrX	5,309,116 – 5,309,176	- - - intron="intron;ID=intron_CG3249:4_CG3249:5;Name=yu-in;Parent=FBtr0070796,FBtr0070794,FBtr0070795;parent_type=mRNA" - - - -	18232	5,309,116 – 5,309,176	+	5	66	58.49	-2.66	0.27	0.983547
13251	dm3.chrX	5,309,116 – 5,309,176		18233	5,309,116 – 5,309,176	-	5	66	58.49	-3.78	0.35	0.999858
13252	dm3.chrX	5,327,027 – 5,327,147	- - - - - - - -	18234	5,327,027 – 5,327,147	+	5	120	79.57	-2.28	0.56	0.876077
13253	dm3.chrX	5,327,300 – 5,327,375	- - - - - - - -	18235	5,327,300 – 5,327,375	-	7	81	61.65	-1.57	0.42	0.958769
13254	dm3.chrX	5,329,392 – 5,329,486	- - - - - - - -	18236	5,329,392 – 5,329,486	+	8	106	64.72	-1.39	0.34	0.542328
13255	dm3.chrX	5,333,470 – 5,333,571	- - - - - - - -	18237	5,333,470 – 5,333,571	+	3	102	74.57	-2.91	0.59	0.987240
13256	dm3.chrX	5,339,291 – 5,339,428	- - - - - - - -	18238	5,339,291 – 5,339,385	+	5	95	72.44	-1.57	0.62	0.923077
				18239	5,339,291 – 5,339,385	-	5	95	72.44	-1.32	0.65	0.872489
				18240	5,339,310 – 5,339,422	-	5	126	67.21	-1.72	0.58	0.955770
				18241	5,339,316 – 5,339,428	-	7	115	62.78	-1.58	0.38	0.892143
13257	dm3.chrX	5,366,207 – 5,366,315	- - - intron="intron;ID=intron_CG16752:2_CG16752:3;Name=SPR-in;Parent=FBtr0070778;parent_type=mRNA" - - - -	18242	5,366,207 – 5,366,315	-	4	109	71.68	-0.92	0.74	0.714444
13258	dm3.chrX	5,367,273 – 5,367,363	- - - intron="intron;ID=intron_CG16752:2_CG16752:3;Name=SPR-in;Parent=FBtr0070778;parent_type=mRNA" - - - -	18243	5,367,273 – 5,367,363	-	6	97	73.81	-0.99	0.72	0.810596
13259	dm3.chrX	5,371,231 – 5,371,360	- - - intron="intron;ID=intron_CG16752:2_CG16752:3;Name=SPR-in;Parent=FBtr0070778;parent_type=mRNA" - - - -	18244	5,371,231 – 5,371,330	+	4	104	60.03	-1.22	0.44	0.748227
				18245	5,371,231 – 5,371,330	-	4	104	60.03	-1.52	0.37	0.682219
				18246	5,371,263 – 5,371,360	+	4	104	56.88	-1.89	0.26	0.596566
13260	dm3.chrX	5,381,381 – 5,381,472	- - CDS="CDS;ID=CDS_CG16752:5_937;Name=SPR-cds;Parent=FBtr0070778;parent_type=mRNA" - - - - -	18247	5,381,381 – 5,381,472	+	14	110	71.71	-1.00	0.57	0.887543
13261	dm3.chrX	5,386,376 – 5,386,503	- - - - - - - -	18248	5,386,376 – 5,386,467	-	6	96	76.69	-1.09	0.63	0.506531
13261	dm3.chrX	5,386,376 – 5,386,503	- - - - - - - -	18249	5,386,395 – 5,386,503	-	6	111	81.36	-1.58	0.77	0.898985
13262	dm3.chrX	5,406,500 – 5,406,628	- - - - - - - -	18250	5,406,500 – 5,406,628	+	6	144	71.19	-1.18	0.61	0.854037
13263	dm3.chrX	5,408,968 – 5,409,068	- - - - - - - -	18251	5,408,968 – 5,409,068	-	7	111	74.17	-2.11	0.40	0.614985
13264	dm3.chrX	5,413,644 – 5,413,702	- - - - - - - -	18252	5,413,644 – 5,413,702	-	3	58	91.91	-0.76	1.09	0.928975
13265	dm3.chrX	5,419,186 – 5,419,287	- - - - - - - -	18253	5,419,186 – 5,419,287	+	5	105	59.27	-1.60	0.64	0.998232
13265	dm3.chrX	5,419,186 – 5,419,287	- - - - - - - -	18254	5,419,186 – 5,419,287	-	5	105	59.27	-1.36	0.52	0.986718
13266	dm3.chrX	5,439,146 – 5,439,265	- - - intron="intron;ID=intron_CG33980:3_CG33980:4;Name=Vsx2-in;Parent=FBtr0100024;parent_type=mRNA" - - - -	18255	5,439,146 – 5,439,265	+	8	123	73.30	-2.03	0.44	0.904025
13266	dm3.chrX	5,439,146 – 5,439,265		18256	5,439,146 – 5,439,265	-	8	123	73.30	-1.12	0.53	0.571185
13267	dm3.chrX	5,442,865 – 5,442,960	- - - intron="intron;ID=intron_CG33980:2_CG33980:3;Name=Vsx2-in;Parent=FBtr0100024;parent_type=mRNA" - - - -	18257	5,442,865 – 5,442,960	-	11	106	89.41	-1.18	0.97	0.881213
13268	dm3.chrX	5,483,984 – 5,484,074	- - - - - - - -	18258	5,483,984 – 5,484,074	+	10	114	74.53	-1.54	0.44	0.611233
13268	dm3.chrX	5,483,984 – 5,484,074	- - - - - - - -	18259	5,483,984 – 5,484,074	-	10	114	74.53	-0.84	0.59	0.557375
13269	dm3.chrX	5,486,837 – 5,486,932	- - - - - - - -	18260	5,486,837 – 5,486,932	-	6	108	74.34	-2.18	0.43	0.855268
13270	dm3.chrX	5,489,312 – 5,489,407	- - - intron="intron;ID=intron_CG4136:1_CG4136:2;Name=Vsx1-in;Parent=FBtr0070781;parent_type=mRNA" - - - -	18261	5,489,312 – 5,489,407	+	4	101	49.92	-1.97	0.18	0.618695
13271	dm3.chrX	5,493,331 – 5,493,393	- - - intron="intron;ID=intron_CG4136:1_CG4136:2;Name=Vsx1-in;Parent=FBtr0070781;parent_type=mRNA" - - - -	18262	5,493,331 – 5,493,393	+	5	76	79.25	-1.86	0.63	0.730988
13272	dm3.chrX	5,496,562 – 5,496,670	- - - intron="intron;ID=intron_CG4136:1_CG4136:2;Name=Vsx1-in;Parent=FBtr0070781;parent_type=mRNA" - - - -	18263	5,496,562 – 5,496,670	+	5	114	92.11	-2.87	0.80	0.974628
13273	dm3.chrX	5,512,653 – 5,512,710	- - CDS="CDS;ID=CDS_CG3208:1_933;Name=RhoGAP5A-cds;Parent=FBtr0070785;parent_type=mRNA" - - - - -	18264	5,512,653 – 5,512,710	-	5	66	83.50	-1.17	0.90	0.772739
13274	dm3.chrX	5,525,668 – 5,525,722	- - - intron="intron;ID=intron_FBgn0259994:5_FBgn0259994:4;Name=CG42492-in;Parent=FBtr0300465,FBtr0300466;parent_type=mRNA" - - - -	18265	5,525,668 – 5,525,722	+	7	57	61.67	-1.08	0.47	0.966360
13274	dm3.chrX	5,525,668 – 5,525,722		18266	5,525,668 – 5,525,722	-	7	57	61.67	-1.38	0.66	0.998596
13275	dm3.chrX	5,533,390 – 5,533,502	- - - - - - - -	18267	5,533,390 – 5,533,502	-	6	117	72.76	-1.47	0.56	0.859382
13276	dm3.chrX	5,535,246 – 5,535,342	- - - - - - - -	18268	5,535,246 – 5,535,342	-	3	96	93.75	-0.66	1.00	0.513443
13277	dm3.chrX	5,553,205 – 5,553,283	- - - intron="intron;ID=intron_FBgn0259150:9_FBgn0259150:8;Name=CG42265-in;Parent=FBtr0299597,FBtr0299598;parent_type=mRNA" - - - -	18269	5,553,205 – 5,553,283	-	5	80	78.93	-1.52	0.61	0.546178
13278	dm3.chrX	5,560,963 – 5,561,082	- - - intron="intron;ID=intron_CG4119:2_CG4119:3;Name=CG4119-in;Parent=FBtr0070799;parent_type=mRNA" - - - -	18270	5,560,963 – 5,561,082	+	4	124	66.18	-1.99	0.49	0.950372
13279	dm3.chrX	5,563,835 – 5,563,955	- - CDS="CDS;ID=CDS_CG4119:5_907;Name=CG4119-cds;Parent=FBtr0070799;parent_type=mRNA" - - - - -	18271	5,563,835 – 5,563,955	+	15	120	85.83	-2.03	0.64	0.831416
13280	dm3.chrX	5,566,419 – 5,566,521	- - - - - - - -	18272	5,566,419 – 5,566,521	-	8	102	59.05	-1.48	0.30	0.776200
13281	dm3.chrX	5,570,363 – 5,570,476	- - - intron="intron;ID=intron_CG3171:1_CG3171:2;Name=Tre1-in;Parent=FBtr0070848;parent_type=mRNA" - - - -	18273	5,570,363 – 5,570,476	-	5	116	80.66	-2.75	0.57	0.962480
13282	dm3.chrX	5,570,541 – 5,570,679	- - - intron="intron;ID=intron_CG3171:1_CG3171:2;Name=Tre1-in;Parent=FBtr0070848;parent_type=mRNA" - - - -	18274	5,570,541 – 5,570,658	-	5	120	76.46	-1.40	0.70	0.747882
13282	dm3.chrX	5,570,541 – 5,570,679		18275	5,570,581 – 5,570,679	-	5	101	76.76	-2.91	0.79	0.997714
13283	dm3.chrX	5,574,254 – 5,574,363	- - - - - - - -	18276	5,574,254 – 5,574,363	-	4	117	75.58	-2.69	0.42	0.882050
13284	dm3.chrX	5,578,784 – 5,578,898	- - - - - - - -	18277	5,578,784 – 5,578,898	+	5	114	79.54	-2.33	0.43	0.608246
13285	dm3.chrX	5,591,869 – 5,591,950	- - - - - - - -	18278	5,591,869 – 5,591,950	+	6	84	71.56	-1.77	0.49	0.915448
13286	dm3.chrX	5,592,102 – 5,592,271	- - - - - - - -	18279	5,592,102 – 5,592,271	-	5	170	71.00	-1.70	0.60	0.972453
13287	dm3.chrX	5,608,013 – 5,608,113	- - - - - - - -	18280	5,608,013 – 5,608,113	+	6	112	54.87	-1.99	0.25	0.935276
13288	dm3.chrX	5,612,936 – 5,613,034	- - - - - - - -	18281	5,612,936 – 5,613,034	+	6	115	77.52	-1.65	0.52	0.510662
13289	dm3.chrX	5,615,311 – 5,615,424	- - - - - - - -	18282	5,615,311 – 5,615,424	-	6	118	73.03	-1.47	0.73	0.974489
13290	dm3.chrX	5,618,740 – 5,618,859	- - - intron="intron;ID=intron_CG32758:1_CG32758:2;Name=CG32758-in;Parent=FBtr0070843;parent_type=mRNA" - - - -	18283	5,618,740 – 5,618,859	+	3	120	87.36	-1.69	0.80	0.579316
13291	dm3.chrX	5,639,549 – 5,639,720	- - - - - - - -	18284	5,639,549 – 5,639,656	+	5	107	96.17	-1.47	0.89	0.505939
				18285	5,639,549 – 5,639,656	-	5	107	96.17	-2.44	0.93	0.975512
				18286	5,639,620 – 5,639,720	-	3	100	92.67	-2.92	0.86	0.984305
13292	dm3.chrX	5,644,804 – 5,644,856	- - - intron="intron;ID=intron_CG4078:4_CG4078:5;Name=CG4078-in;Parent=FBtr0070807;parent_type=mRNA" - - - -	18287	5,644,804 – 5,644,856	+	5	52	84.04	-3.12	0.90	0.997886
13292	dm3.chrX	5,644,804 – 5,644,856		18288	5,644,804 – 5,644,856	-	5	52	84.04	-2.59	0.90	0.994567
13293	dm3.chrX	5,649,065 – 5,649,171	- - - - - - - -	18289	5,649,065 – 5,649,171	+	4	106	95.75	-2.34	0.89	0.939043
13293	dm3.chrX	5,649,065 – 5,649,171	- - - - - - - -	18290	5,649,065 – 5,649,171	-	4	106	95.75	-1.76	0.90	0.773029
13294	dm3.chrX	5,657,432 – 5,657,540	- - - - - - - -	18291	5,657,432 – 5,657,540	+	6	118	77.22	-1.31	0.61	0.574663
13295	dm3.chrX	5,660,932 – 5,661,057	- - - intron="intron;ID=intron_FBgn0029804:2_FBgn0029804:1;Name=CG3097-in;Parent=FBtr0070836;parent_type=mRNA" - - - -	18292	5,660,932 – 5,661,034	-	5	118	68.99	-2.08	0.54	0.987342
13295	dm3.chrX	5,660,932 – 5,661,057		18293	5,660,954 – 5,661,057	+	3	103	74.22	-1.19	0.75	0.509684
13296	dm3.chrX	5,664,758 – 5,664,856	- - - - - - - -	18294	5,664,758 – 5,664,856	-	7	110	73.27	-1.26	0.57	0.787308
13297	dm3.chrX	5,680,528 – 5,680,640	- - - intron="intron;ID=intron_FBgn0261610:4_FBgn0261610:5;Name=CG42699-in;Parent=FBtr0302921;parent_type=mRNA" - - - -	18295	5,680,528 – 5,680,640	-	7	120	81.86	-1.83	0.57	0.642220
13298	dm3.chrX	5,684,823 – 5,684,878	- - - - - - - -	18296	5,684,823 – 5,684,878	+	5	61	75.26	-1.91	0.77	0.981775
13298	dm3.chrX	5,684,823 – 5,684,878	- - - - - - - -	18297	5,684,823 – 5,684,878	-	5	61	75.26	-1.62	0.58	0.739949
13299	dm3.chrX	5,688,478 – 5,688,590	- - - - - - - -	18298	5,688,478 – 5,688,586	-	6	110	86.20	-2.15	0.59	0.573753
13299	dm3.chrX	5,688,478 – 5,688,590	- - - - - - - -	18299	5,688,482 – 5,688,590	+	6	110	86.13	-1.92	0.66	0.624332
13300	dm3.chrX	5,694,989 – 5,695,079	- - - - - - - -	18300	5,694,989 – 5,695,079	-	8	108	70.37	-2.49	0.32	0.872951
13301	dm3.chrX	5,707,057 – 5,707,145	- - - - - - - -	18301	5,707,057 – 5,707,145	+	4	93	66.36	-0.66	0.61	0.516410
13302	dm3.chrX	5,711,146 – 5,711,212	- - - - - - - -	18302	5,711,146 – 5,711,212	-	3	74	70.83	-1.92	0.64	0.921422
13303	dm3.chrX	5,716,309 – 5,716,405	- - - intron="intron;ID=intron_CG15765:2_CG15765:3;Name=CG15765-in;Parent=FBtr0070817;parent_type=mRNA" - - - -	18303	5,716,309 – 5,716,405	-	12	112	71.15	-1.36	0.36	0.511625
13304	dm3.chrX	5,717,442 – 5,717,584	- - - intron="intron;ID=intron_CG15765:2_CG15765:3;Name=CG15765-in;Parent=FBtr0070817;parent_type=mRNA" - - - -	18304	5,717,442 – 5,717,547	+	6	113	70.80	-1.47	0.58	0.930706
				18305	5,717,442 – 5,717,547	-	6	113	70.80	-1.77	0.51	0.936604
				18306	5,717,480 – 5,717,584	+	4	104	87.54	-1.71	0.76	0.531437
				18307	5,717,480 – 5,717,584	-	4	104	87.54	-1.36	0.87	0.668355
13305	dm3.chrX	5,720,714 – 5,720,805	- - - intron="intron;ID=intron_CG15765:2_CG15765:3;Name=CG15765-in;Parent=FBtr0070817;parent_type=mRNA" - - - -	18308	5,720,714 – 5,720,805	-	5	91	86.13	-2.17	0.67	0.780941
13306	dm3.chrX	5,721,765 – 5,721,868	- - - intron="intron;ID=intron_CG15765:2_CG15765:3;Name=CG15765-in;Parent=FBtr0070817;parent_type=mRNA" - - - -	18309	5,721,765 – 5,721,868	-	4	108	76.76	-2.65	0.54	0.966818
13307	dm3.chrX	5,723,468 – 5,723,572	- - - intron="intron;ID=intron_CG15765:2_CG15765:3;Name=CG15765-in;Parent=FBtr0070817;parent_type=mRNA" - - - -	18310	5,723,468 – 5,723,572	-	7	120	74.44	-1.76	0.56	0.837169
13308	dm3.chrX	5,723,862 – 5,723,963	- - - intron="intron;ID=intron_CG15765:2_CG15765:3;Name=CG15765-in;Parent=FBtr0070817;parent_type=mRNA" - - - -	18311	5,723,862 – 5,723,963	-	6	101	74.78	-1.40	0.59	0.784629
13309	dm3.chrX	5,726,135 – 5,726,298	- - - intron="intron;ID=intron_CG15765:2_CG15765:3;Name=CG15765-in;Parent=FBtr0070817;parent_type=mRNA" - - - -	18312	5,726,135 – 5,726,243	+	5	119	75.00	-3.23	0.81	0.999191
				18313	5,726,135 – 5,726,243	-	5	119	75.00	-2.99	0.82	0.998826
				18314	5,726,167 – 5,726,283	+	5	119	78.55	-1.56	0.70	0.841055
				18315	5,726,167 – 5,726,283	-	5	119	78.55	-2.01	0.81	0.983237
				18316	5,726,182 – 5,726,298	+	5	120	72.11	-1.31	0.52	0.587794
				18317	5,726,182 – 5,726,298	-	5	120	72.11	-1.77	0.60	0.960867
13310	dm3.chrX	5,740,517 – 5,740,649	- - - - - - - -	18318	5,740,517 – 5,740,649	-	4	149	57.25	-1.38	0.39	0.630748
13311	dm3.chrX	5,741,131 – 5,741,186	- - - - - - - -	18319	5,741,131 – 5,741,186	+	7	55	73.48	-3.45	0.73	0.999711
13312	dm3.chrX	5,745,741 – 5,745,860	- - - - - - - -	18320	5,745,741 – 5,745,852	-	8	113	74.87	-1.45	0.49	0.641571
13312	dm3.chrX	5,745,741 – 5,745,860	- - - - - - - -	18321	5,745,750 – 5,745,860	-	8	113	68.78	-1.33	0.42	0.795480
13313	dm3.chrX	5,749,051 – 5,749,131	- - - - - - - -	18322	5,749,051 – 5,749,131	+	4	92	62.89	-1.07	0.57	0.848537
13314	dm3.chrX	5,751,085 – 5,751,207	- - - - - - - -	18323	5,751,085 – 5,751,176	-	5	101	81.20	-1.82	0.93	0.977267
13314	dm3.chrX	5,751,085 – 5,751,207	- - - - - - - -	18324	5,751,111 – 5,751,207	-	5	120	77.56	-1.93	0.67	0.904038
13315	dm3.chrX	5,756,154 – 5,756,350	- - - - - - - -	18325	5,756,154 – 5,756,254	-	4	118	82.27	-1.71	0.66	0.540063
				18326	5,756,192 – 5,756,293	+	3	120	74.93	-1.98	0.50	0.500000
				18327	5,756,192 – 5,756,293	-	3	120	74.93	-1.83	0.63	0.795629
				18328	5,756,232 – 5,756,331	+	3	118	71.71	-1.88	0.69	0.947493
				18329	5,756,233 – 5,756,350	+	5	118	78.29	-2.48	0.48	0.873189
				18330	5,756,233 – 5,756,350	-	5	118	78.29	-1.44	0.63	0.544900
13316	dm3.chrX	5,773,403 – 5,773,525	- - CDS="CDS;ID=CDS_CG3016:1_905;Name=CG3016-cds;Parent=FBtr0070828;parent_type=mRNA" - - - - -	18331	5,773,403 – 5,773,525	-	11	138	68.94	-0.84	0.53	0.819323
13317	dm3.chrX	5,778,782 – 5,778,883	- - - - - - - -	18332	5,778,782 – 5,778,883	-	6	117	78.29	-1.44	0.67	0.723829
13318	dm3.chrX	5,783,785 – 5,783,886	- - - - - - - -	18333	5,783,785 – 5,783,886	+	6	113	54.40	-2.02	0.23	0.837008
13319	dm3.chrX	5,786,381 – 5,786,478	- - - - - - - -	18334	5,786,381 – 5,786,478	-	8	106	59.53	-1.98	0.17	0.548380
13320	dm3.chrX	5,787,957 – 5,788,062	- - - - - - - -	18335	5,787,957 – 5,788,062	-	5	118	84.64	-2.32	0.69	0.892671
13321	dm3.chrX	5,790,088 – 5,790,163	- - - - - - - -	18336	5,790,088 – 5,790,163	+	5	78	79.76	-1.75	0.64	0.764483
13322	dm3.chrX	5,810,717 – 5,810,906	- - - - - - - -	18337	5,810,717 – 5,810,831	+	6	116	64.66	-1.80	0.37	0.898220
13322	dm3.chrX	5,810,717 – 5,810,906	- - - - - - - -	18338	5,810,791 – 5,810,906	+	6	116	69.74	-1.19	0.50	0.746180
13323	dm3.chrX	5,815,266 – 5,815,342	- - - intron="intron;ID=intron_CG3726:1_CG3726:2;Name=CG3726-in;Parent=FBtr0070858;parent_type=mRNA" - - - -	18339	5,815,266 – 5,815,342	-	5	81	64.18	-2.63	0.31	0.973421
13324	dm3.chrX	5,828,105 – 5,828,208	- - - intron="intron;ID=intron_CG3726:1_CG3726:2;Name=CG3726-in;Parent=FBtr0070858;parent_type=mRNA" - - - -	18340	5,828,105 – 5,828,208	+	3	119	78.89	-1.52	0.72	0.500000
13325	dm3.chrX	5,828,307 – 5,828,368	- - - intron="intron;ID=intron_CG3726:1_CG3726:2;Name=CG3726-in;Parent=FBtr0070858;parent_type=mRNA" - - - -	18341	5,828,307 – 5,828,368	+	5	61	93.11	-2.32	0.90	0.967113
13325	dm3.chrX	5,828,307 – 5,828,368		18342	5,828,307 – 5,828,368	-	5	61	93.11	-1.73	0.89	0.816500
13326	dm3.chrX	5,859,773 – 5,859,868	- - - - - - - -	18343	5,859,773 – 5,859,868	+	5	100	81.07	-2.76	0.66	0.986039
13326	dm3.chrX	5,859,773 – 5,859,868	- - - - - - - -	18344	5,859,773 – 5,859,868	-	5	100	81.07	-1.28	0.79	0.687815
13327	dm3.chrX	5,859,910 – 5,860,012	- - - - - - - -	18345	5,859,910 – 5,860,012	+	9	106	60.56	-2.55	0.46	0.999829
13327	dm3.chrX	5,859,910 – 5,860,012	- - - - - - - -	18346	5,859,910 – 5,860,012	-	9	106	60.56	-2.57	0.35	0.999033
13328	dm3.chrX	5,868,250 – 5,868,303	- - - intron="intron;ID=intron_CG14447:1_CG14447:2;Name=Grip-in;Parent=FBtr0070865;parent_type=mRNA" - - - -	18347	5,868,250 – 5,868,303	+	6	53	64.27	-0.43	0.84	0.920324
13329	dm3.chrX	5,875,055 – 5,875,105	- - - intron="intron;ID=intron_CG14447:2_CG14447:3;Name=Grip-in;Parent=FBtr0070865;parent_type=mRNA" - - - -	18348	5,875,055 – 5,875,105	+	3	50	80.00	-1.61	0.89	0.932857
13329	dm3.chrX	5,875,055 – 5,875,105		18349	5,875,055 – 5,875,105	-	3	50	80.00	-2.24	0.98	0.993464
13330	dm3.chrX	5,875,243 – 5,875,304	- - - intron="intron;ID=intron_CG14447:2_CG14447:3;Name=Grip-in;Parent=FBtr0070865;parent_type=mRNA" - - - -	18350	5,875,243 – 5,875,304	+	6	63	92.43	-2.13	0.88	0.940136
13331	dm3.chrX	5,883,690 – 5,883,787	- - - intron="intron;ID=intron_CG5966:1_CG5966:2;Name=CG5966-in;Parent=FBtr0070866;parent_type=mRNA" - - - -	18351	5,883,690 – 5,883,787	+	5	120	79.68	-2.07	0.65	0.871008
13332	dm3.chrX	5,899,221 – 5,899,274	- - - - - - - -	18352	5,899,221 – 5,899,274	+	5	53	76.04	-1.58	0.79	0.962971
13333	dm3.chrX	5,910,119 – 5,910,209	- - - - - - - -	18353	5,910,119 – 5,910,209	+	3	90	96.27	-1.63	0.93	0.782002
13333	dm3.chrX	5,910,119 – 5,910,209	- - - - - - - -	18354	5,910,119 – 5,910,209	-	3	90	96.27	-1.73	1.01	0.962227
13334	dm3.chrX	5,914,071 – 5,914,164	- - - - - - - -	18355	5,914,071 – 5,914,164	-	5	94	69.81	-1.41	0.53	0.872091
13335	dm3.chrX	5,916,764 – 5,916,857	- - - - - - - -	18356	5,916,764 – 5,916,857	+	6	104	68.48	-1.70	0.53	0.969089
13336	dm3.chrX	5,919,093 – 5,919,186	- - - - - - - -	18357	5,919,093 – 5,919,186	+	4	98	88.93	-2.66	0.63	0.771381
13337	dm3.chrX	5,925,865 – 5,925,990	- - - - - - - -	18358	5,925,865 – 5,925,990	+	3	125	91.73	-2.87	0.77	0.950388
13337	dm3.chrX	5,925,865 – 5,925,990	- - - - - - - -	18359	5,925,865 – 5,925,990	-	3	125	91.73	-3.37	0.89	0.996049
13338	dm3.chrX	5,929,765 – 5,929,860	- - - - - - - -	18360	5,929,765 – 5,929,860	-	4	97	90.97	-1.18	0.94	0.702141
13339	dm3.chrX	5,931,541 – 5,931,591	- - - - - - - -	18361	5,931,541 – 5,931,591	-	5	55	60.96	-2.56	0.39	0.996580
13340	dm3.chrX	5,935,177 – 5,935,270	- - - intron="intron;ID=intron_FBgn0029834:3_FBgn0029834:4;Name=CG5937-in;Parent=FBtr0305345,FBtr0305346;parent_type=mRNA" - - - -	18362	5,935,177 – 5,935,270	-	4	93	64.87	-1.41	0.41	0.591711
13341	dm3.chrX	5,935,818 – 5,935,881	- - - intron="intron;ID=intron_FBgn0029834:4_FBgn0029834:5;Name=CG5937-in;Parent=FBtr0305345,FBtr0305346;parent_type=mRNA" - - - -	18363	5,935,818 – 5,935,881	-	7	67	76.97	-1.25	0.61	0.657063
13342	dm3.chrX	5,939,960 – 5,940,065	- - CDS="CDS;ID=CDS_FBgn0029834:10_1027;Name=CG5937-cds;Parent=FBtr0305345,FBtr0305346;parent_type=mRNA" - - - - -	18364	5,939,960 – 5,940,065	-	14	116	73.75	-1.88	0.38	0.785000
13343	dm3.chrX	5,948,100 – 5,948,194	- - - intron="intron;ID=intron_FBgn0029835:1_FBgn0029835:2;Name=CG5921-in;Parent=FBtr0305342,FBtr0305343;parent_type=mRNA" - - - -	18365	5,948,100 – 5,948,194	-	4	94	97.16	-2.17	0.98	0.976549
13344	dm3.chrX	5,952,113 – 5,952,187	- - - intron="intron;ID=intron_FBgn0029835:1_FBgn0029835:2;Name=CG5921-in;Parent=FBtr0305342,FBtr0305343;parent_type=mRNA" - - - -	18366	5,952,113 – 5,952,187	+	4	81	70.57	-2.97	0.38	0.953193
13344	dm3.chrX	5,952,113 – 5,952,187		18367	5,952,113 – 5,952,187	-	4	81	70.57	-2.19	0.57	0.963204
13345	dm3.chrX	5,959,125 – 5,959,193	- - - - - - - -	18368	5,959,125 – 5,959,193	+	15	77	72.27	-1.00	0.55	0.918051
13346	dm3.chrX	5,967,259 – 5,967,391	- - - - - - - -	18369	5,967,259 – 5,967,359	+	3	100	98.67	-0.86	1.01	0.622837
13346	dm3.chrX	5,967,259 – 5,967,391	- - - - - - - -	18370	5,967,295 – 5,967,391	+	3	96	93.59	-0.79	0.99	0.559675
13347	dm3.chrX	5,971,207 – 5,971,363	- - - intron="intron;ID=intron_CG4666:1_CG4666:2;Name=CG4666-in;Parent=FBtr0070887;parent_type=mRNA" - - - -	18371	5,971,207 – 5,971,323	+	5	117	77.03	-2.76	0.86	0.997468
				18372	5,971,207 – 5,971,323	-	5	117	77.03	-2.87	0.79	0.997642
				18373	5,971,247 – 5,971,363	+	5	117	86.43	-2.92	0.77	0.990707
				18374	5,971,247 – 5,971,363	-	5	117	86.43	-2.87	0.85	0.994479
13348	dm3.chrX	5,972,570 – 5,972,682	- - - - - - - -	18375	5,972,570 – 5,972,682	+	6	120	66.92	-2.07	0.29	0.654916
13348	dm3.chrX	5,972,570 – 5,972,682	- - - - - - - -	18376	5,972,570 – 5,972,682	-	6	120	66.92	-0.87	0.48	0.517053
13349	dm3.chrX	5,975,978 – 5,976,070	- - - - - - - -	18377	5,975,978 – 5,976,070	-	5	104	77.03	-2.07	0.49	0.659998
13350	dm3.chrX	5,976,450 – 5,976,529	- - - - - - - -	18378	5,976,450 – 5,976,529	-	5	86	77.23	-1.23	0.79	0.818577
13351	dm3.chrX	5,989,310 – 5,989,502	- - - intron="intron;ID=intron_CG5905:10_CG5905:2;Name=Nep1-in;Parent=FBtr0070873;parent_type=mRNA" - - - -	18379	5,989,310 – 5,989,401	-	3	97	73.05	-1.58	0.63	0.624462
13351	dm3.chrX	5,989,310 – 5,989,502		18380	5,989,401 – 5,989,502	-	3	101	79.93	-1.94	0.63	0.505102
13352	dm3.chrX	6,004,043 – 6,004,175	- - - intron="intron;ID=intron_FBgn0029846:3_FBgn0029846:2;Name=Ca-alpha1T-in;Parent=FBtr0089393,FBtr0112953,FBtr0304609,FBtr0304610;parent_type=mRNA" - - - -	18381	6,004,043 – 6,004,175	+	5	133	93.05	-2.50	0.84	0.948819
13352	dm3.chrX	6,004,043 – 6,004,175		18382	6,004,043 – 6,004,175	-	5	133	93.05	-2.88	0.93	0.993801
13353	dm3.chrX	6,008,000 – 6,008,063	- - CDS="CDS;ID=CDS_FBgn0029846:6_880;Name=Ca-alpha1T-cds;Parent=FBtr0089393,FBtr0112953,FBtr0304609,FBtr0304610;parent_type=mRNA" - - - - -	18383	6,008,000 – 6,008,063	+	13	63	79.08	-1.19	0.64	0.810399
13354	dm3.chrX	6,021,615 – 6,021,669	- - - intron="intron;ID=intron_FBgn0029846:17_FBgn0029846:16;Name=Ca-alpha1T-in;Parent=FBtr0089393,FBtr0112953,FBtr0304609;parent_type=mRNA" - - - -	18384	6,021,615 – 6,021,669	-	5	55	68.57	-0.88	0.57	0.701551
13355	dm3.chrX	6,023,272 – 6,023,427	- - - intron="intron;ID=intron_FBgn0029846:19_FBgn0029846:18;Name=Ca-alpha1T-in;Parent=FBtr0304610;parent_type=mRNA" - - - -	18385	6,023,272 – 6,023,427	+	3	155	62.03	-2.39	0.35	0.874130
13356	dm3.chrX	6,030,453 – 6,030,566	- - - intron="intron;ID=intron_FBgn0029846:22_FBgn0029846:21;Name=Ca-alpha1T-in;Parent=FBtr0089393,FBtr0112953,FBtr0304609,FBtr0304610;parent_type=mRNA" - - - -	18386	6,030,453 – 6,030,566	-	5	113	91.73	-1.25	0.89	0.515952
13357	dm3.chrX	6,039,906 – 6,039,996	- - CDS="CDS;ID=CDS_FBgn0029846:25_880;Name=Ca-alpha1T-cds;Parent=FBtr0089393,FBtr0112953,FBtr0304609,FBtr0304610;parent_type=mRNA" - - - - -	18387	6,039,906 – 6,039,996	+	5	93	86.29	-1.78	0.86	0.918692
13358	dm3.chrX	6,056,574 – 6,056,705	- - - intron="intron;ID=intron_FBgn0029846:26_FBgn0029846:25;Name=Ca-alpha1T-in;Parent=FBtr0089393,FBtr0112953,FBtr0304609,FBtr0304610;parent_type=mRNA" - - - -	18388	6,056,574 – 6,056,685	+	3	113	71.17	-1.08	0.75	0.672610
				18389	6,056,574 – 6,056,685	-	3	113	71.17	-3.43	0.79	0.999220
				18390	6,056,614 – 6,056,705	+	4	92	88.38	-3.22	0.77	0.990692
				18391	6,056,614 – 6,056,705	-	4	92	88.38	-2.00	0.81	0.834905
13359	dm3.chrX	6,064,608 – 6,064,701	- - - intron="intron;ID=intron_FBgn0029846:27_FBgn0029846:26;Name=Ca-alpha1T-in;Parent=FBtr0089393,FBtr0112953,FBtr0304609,FBtr0304610;parent_type=mRNA" - - - -	18392	6,064,608 – 6,064,701	+	4	93	99.46	-1.07	1.00	0.697789
13360	dm3.chrX	6,074,195 – 6,074,248	- - - intron="intron;ID=intron_FBgn0029846:27_FBgn0029846:26;Name=Ca-alpha1T-in;Parent=FBtr0089393,FBtr0112953,FBtr0304609,FBtr0304610;parent_type=mRNA" - - - -	18393	6,074,195 – 6,074,248	+	6	53	86.16	-1.81	0.69	0.626989
13361	dm3.chrX	6,079,326 – 6,079,427	- - - intron="intron;ID=intron_FBgn0029846:27_FBgn0029846:26;Name=Ca-alpha1T-in;Parent=FBtr0089393,FBtr0112953,FBtr0304609,FBtr0304610;parent_type=mRNA" - - - -	18394	6,079,326 – 6,079,427	-	3	102	94.10	-1.23	0.92	0.505784
13362	dm3.chrX	6,085,694 – 6,085,793	- - - intron="intron;ID=intron_FBgn0029846:28_FBgn0029846:27;Name=Ca-alpha1T-in;Parent=FBtr0089393,FBtr0112953,FBtr0304609,FBtr0304610;parent_type=mRNA" - - - -	18395	6,085,694 – 6,085,793	+	5	99	98.18	-1.29	0.99	0.808659
13363	dm3.chrX	6,087,137 – 6,087,187	- - - - - - - -	18396	6,087,137 – 6,087,187	+	5	50	88.20	-2.05	0.72	0.707945
13363	dm3.chrX	6,087,137 – 6,087,187	- - - - - - - -	18397	6,087,137 – 6,087,187	-	5	50	88.20	-2.85	0.72	0.971612
13364	dm3.chrX	6,111,014 – 6,111,145	- - - - - - - -	18398	6,111,014 – 6,111,145	-	6	144	66.63	-0.96	0.46	0.649188
13365	dm3.chrX	6,113,455 – 6,113,555	- - - - - - - -	18399	6,113,455 – 6,113,555	-	5	102	69.80	-1.48	0.52	0.871793
13366	dm3.chrX	6,126,347 – 6,126,441	- - - - - - - -	18400	6,126,347 – 6,126,441	+	7	104	65.63	-0.64	0.53	0.513278
13367	dm3.chrX	6,142,903 – 6,143,017	- - CDS="CDS;ID=CDS_FBgn0023458:12_911;Name=Rbcn-3A-cds;Parent=FBtr0303341;parent_type=mRNA" - - - - -	18401	6,142,903 – 6,143,017	-	14	120	77.57	-1.46	0.48	0.596126
13368	dm3.chrX	6,154,573 – 6,154,666	- - - intron="intron;ID=intron_FBgn0040918:7_FBgn0040918:5;Name=schlank-in;Parent=FBtr0070938;parent_type=mRNA" - - - -	18402	6,154,573 – 6,154,666	+	6	103	73.24	-1.93	0.44	0.751260
13368	dm3.chrX	6,154,573 – 6,154,666		18403	6,154,573 – 6,154,666	-	6	103	73.24	-1.65	0.52	0.804216
13369	dm3.chrX	6,154,743 – 6,154,853	- - - intron="intron;ID=intron_FBgn0040918:7_FBgn0040918:5;Name=schlank-in;Parent=FBtr0070938;parent_type=mRNA" - - - -	18404	6,154,743 – 6,154,836	-	5	97	86.96	-2.83	0.62	0.923587
13369	dm3.chrX	6,154,743 – 6,154,853		18405	6,154,749 – 6,154,853	-	5	108	84.14	-2.12	0.64	0.746321
13370	dm3.chrX	6,155,293 – 6,155,347	- - CDS="CDS;ID=CDS_FBgn0029853:1_1005;Name=CG3781-cds;Parent=FBtr0070895;parent_type=mRNA" intron="intron;ID=intron_FBgn0040918:7_FBgn0040918:5;Name=schlank-in;Parent=FBtr0070938;parent_type=mRNA" - - - -	18406	6,155,293 – 6,155,347	+	5	55	71.51	-1.87	0.51	0.932266
13370	dm3.chrX	6,155,293 – 6,155,347		18407	6,155,293 – 6,155,347	-	5	55	71.51	-2.72	0.58	0.998040
13371	dm3.chrX	6,158,233 – 6,158,349	- - - intron="intron;ID=intron_FBgn0040918:7_FBgn0040918:5;Name=schlank-in;Parent=FBtr0070938;parent_type=mRNA" - - - -	18408	6,158,233 – 6,158,349	-	5	119	84.18	-2.77	0.75	0.986658
13372	dm3.chrX	6,173,537 – 6,173,642	- - - - - - - -	18409	6,173,537 – 6,173,642	+	5	105	86.29	-2.12	0.68	0.740669
13373	dm3.chrX	6,188,593 – 6,188,759	- - CDS="CDS;ID=CDS_CG15891:1_887;Name=CG15891-cds;Parent=FBtr0100319;parent_type=mRNA" - - - - -	18410	6,188,593 – 6,188,759	-	10	184	64.54	-0.72	0.43	0.623312
13374	dm3.chrX	6,189,138 – 6,189,250	- - - - - - - -	18411	6,189,138 – 6,189,250	-	4	116	69.71	-1.18	0.58	0.605598
13375	dm3.chrX	6,192,779 – 6,192,912	- - - - - - - -	18412	6,192,779 – 6,192,912	-	5	141	59.25	-2.17	0.27	0.879748
13376	dm3.chrX	6,195,882 – 6,196,050	- - - - - - - -	18413	6,195,882 – 6,195,988	+	6	115	78.10	-1.84	0.67	0.936275
				18414	6,195,882 – 6,195,988	-	6	115	78.10	-2.00	0.69	0.967621
				18415	6,195,917 – 6,196,022	+	6	115	71.31	-2.69	0.62	0.998889
				18416	6,195,917 – 6,196,022	-	6	115	71.31	-2.89	0.60	0.999229
				18417	6,195,948 – 6,196,050	+	6	116	67.41	-2.05	0.55	0.995584
				18418	6,195,948 – 6,196,050	-	6	116	67.41	-2.65	0.42	0.995660
13377	dm3.chrX	6,201,243 – 6,201,369	- - - - - - - -	18419	6,201,243 – 6,201,334	-	7	104	68.63	-1.32	0.60	0.966980
				18420	6,201,267 – 6,201,369	+	7	112	69.28	-0.90	0.55	0.731831
				18421	6,201,267 – 6,201,369	-	7	112	69.28	-1.21	0.65	0.966107
13378	dm3.chrX	6,214,741 – 6,214,852	- - CDS="CDS;ID=CDS_FBgn0029864:2_950;Name=CG15894-cds;Parent=FBtr0112955;parent_type=mRNA" - - - - -	18422	6,214,741 – 6,214,852	+	11	117	75.30	-1.17	0.50	0.554755
13379	dm3.chrX	6,216,310 – 6,216,407	- - - intron="intron;ID=intron_FBgn0029864:3_FBgn0029864:4;Name=CG15894-in;Parent=FBtr0070901,FBtr0112955;parent_type=mRNA" - - - -	18423	6,216,310 – 6,216,407	-	5	114	85.00	-1.99	0.72	0.775124
13380	dm3.chrX	6,217,240 – 6,217,326	- - - intron="intron;ID=intron_FBgn0029864:3_FBgn0029864:4;Name=CG15894-in;Parent=FBtr0070901,FBtr0112955;parent_type=mRNA" - - - -	18424	6,217,240 – 6,217,326	+	3	86	76.47	-1.60	0.77	0.789091
13380	dm3.chrX	6,217,240 – 6,217,326		18425	6,217,240 – 6,217,326	-	3	86	76.47	-1.10	0.81	0.515442
13381	dm3.chrX	6,224,324 – 6,224,475	- - - - - - - -	18426	6,224,324 – 6,224,475	+	6	151	75.54	-1.29	0.60	0.772945
13382	dm3.chrX	6,229,052 – 6,229,157	- - - - - - - -	18427	6,229,052 – 6,229,157	+	5	112	79.61	-1.96	0.50	0.500000
13383	dm3.chrX	6,237,262 – 6,237,352	- - CDS="CDS;ID=CDS_CG3842:2_933;Name=CG3842-cds;Parent=FBtr0070904;parent_type=mRNA" - - - - -	18428	6,237,262 – 6,237,352	+	5	93	77.74	-2.67	0.55	0.972031
13383	dm3.chrX	6,237,262 – 6,237,352		18429	6,237,262 – 6,237,352	-	5	93	77.74	-2.42	0.56	0.942657
13384	dm3.chrX	6,240,434 – 6,240,489	- - - - - - - -	18430	6,240,434 – 6,240,489	-	3	55	90.91	-1.64	0.98	0.947003
13385	dm3.chrX	6,246,550 – 6,246,604	- - - intron="intron;ID=intron_CG3861:4_CG3861:2;Name=kdn-in;Parent=FBtr0070907;parent_type=mRNA" - - - -	18431	6,246,550 – 6,246,604	+	6	62	72.29	-2.30	0.68	0.996691
13385	dm3.chrX	6,246,550 – 6,246,604		18432	6,246,550 – 6,246,604	-	6	62	72.29	-2.62	0.52	0.994580
13386	dm3.chrX	6,246,742 – 6,246,801	- - - intron="intron;ID=intron_CG3861:4_CG3861:2;Name=kdn-in;Parent=FBtr0070907;parent_type=mRNA" - - - -	18433	6,246,742 – 6,246,801	-	7	62	85.15	-1.03	0.92	0.753838
13387	dm3.chrX	6,252,104 – 6,252,187	- - - intron="intron;ID=intron_CG3861:4_CG3861:2;Name=kdn-in;Parent=FBtr0070907;parent_type=mRNA" - - - -	18434	6,252,104 – 6,252,187	+	6	95	52.10	-1.15	0.35	0.885101
13388	dm3.chrX	6,255,419 – 6,255,478	- - - - - - - -	18435	6,255,419 – 6,255,478	-	6	60	61.38	-1.38	0.32	0.656452
13389	dm3.chrX	6,276,698 – 6,276,771	- - - - - - - -	18436	6,276,698 – 6,276,771	-	5	75	63.84	-1.33	0.55	0.979876
13390	dm3.chrX	6,283,078 – 6,283,156	- - - - - - - -	18437	6,283,078 – 6,283,156	+	6	81	71.62	-1.32	0.47	0.606802
13390	dm3.chrX	6,283,078 – 6,283,156	- - - - - - - -	18438	6,283,078 – 6,283,156	-	6	81	71.62	-1.77	0.37	0.547728
13391	dm3.chrX	6,288,855 – 6,288,970	- - - - - - - -	18439	6,288,855 – 6,288,970	+	5	119	53.40	-2.43	0.11	0.658097
13392	dm3.chrX	6,292,338 – 6,292,429	- - - - - - - -	18440	6,292,338 – 6,292,429	+	4	99	64.12	-0.71	0.60	0.617470
13393	dm3.chrX	6,304,577 – 6,304,672	- - - - - - - -	18441	6,304,577 – 6,304,672	+	7	95	84.25	-0.75	0.90	0.544517
13394	dm3.chrX	6,307,881 – 6,307,986	- - - - - - - -	18442	6,307,881 – 6,307,986	+	12	120	87.38	-2.08	0.76	0.909198
13395	dm3.chrX	6,308,855 – 6,308,956	- - - - - - - -	18443	6,308,855 – 6,308,956	+	4	111	80.60	-2.57	0.58	0.901464
13396	dm3.chrX	6,309,711 – 6,309,858	- - - - - - - -	18444	6,309,711 – 6,309,828	+	5	119	79.44	-1.81	0.55	0.570373
13396	dm3.chrX	6,309,711 – 6,309,858	- - - - - - - -	18445	6,309,743 – 6,309,858	+	5	119	82.25	-2.26	0.49	0.500000
13397	dm3.chrX	6,319,568 – 6,319,666	- - - - - - - -	18446	6,319,568 – 6,319,666	-	6	115	71.20	-2.37	0.33	0.769475
13398	dm3.chrX	6,321,551 – 6,321,653	- - - - - - - -	18447	6,321,551 – 6,321,653	-	8	110	76.88	-1.50	0.58	0.790154
13399	dm3.chrX	6,322,749 – 6,322,833	- - - - - - - -	18448	6,322,749 – 6,322,833	-	7	85	89.30	-2.39	0.82	0.960217
13400	dm3.chrX	6,357,753 – 6,357,826	- - - - - - - -	18449	6,357,753 – 6,357,826	-	8	76	80.17	-2.27	0.50	0.873335
13401	dm3.chrX	6,357,912 – 6,358,028	- - - - - - - -	18450	6,357,912 – 6,358,028	+	6	118	70.58	-0.75	0.59	0.682790
13401	dm3.chrX	6,357,912 – 6,358,028	- - - - - - - -	18451	6,357,912 – 6,358,028	-	6	118	70.58	-0.46	0.66	0.627921
13402	dm3.chrX	6,364,233 – 6,364,333	- - - intron="intron;ID=intron_FBgn0259242:2_FBgn0259242:1;Name=CG42340-in;Parent=FBtr0299863;parent_type=mRNA" - - - -	18452	6,364,233 – 6,364,333	-	5	108	81.02	-1.47	0.71	0.588905
13403	dm3.chrX	6,368,485 – 6,368,538	- - - - - - - -	18453	6,368,485 – 6,368,538	-	6	61	65.55	-1.93	0.65	0.995773
13404	dm3.chrX	6,368,784 – 6,368,881	- - - - - - - -	18454	6,368,784 – 6,368,881	+	6	109	72.36	-1.65	0.69	0.978611
13405	dm3.chrX	6,375,103 – 6,375,238	- - - - - - - -	18455	6,375,103 – 6,375,238	+	6	149	72.39	-1.73	0.55	0.928233
13406	dm3.chrX	6,378,688 – 6,378,749	- - - intron="intron;ID=intron_FBgn0259242:5_FBgn0259242:4;Name=CG42340-in;Parent=FBtr0299863;parent_type=mRNA" - - - -	18456	6,378,688 – 6,378,749	+	5	61	73.61	-2.73	0.62	0.997903
13406	dm3.chrX	6,378,688 – 6,378,749		18457	6,378,688 – 6,378,749	-	5	61	73.61	-2.60	0.51	0.990448
13407	dm3.chrX	6,387,229 – 6,387,365	- - - intron="intron;ID=intron_FBgn0259242:6_FBgn0259242:5;Name=CG42340-in;Parent=FBtr0299863;parent_type=mRNA" - - - -	18458	6,387,229 – 6,387,334	+	8	109	73.08	-1.78	0.45	0.859821
13407	dm3.chrX	6,387,229 – 6,387,365		18459	6,387,265 – 6,387,365	+	7	112	76.92	-1.74	0.51	0.550014
13408	dm3.chrX	6,394,160 – 6,394,268	- - - intron="intron;ID=intron_FBgn0259242:6_FBgn0259242:5;Name=CG42340-in;Parent=FBtr0299863;parent_type=mRNA" - - - -	18460	6,394,160 – 6,394,268	-	5	120	81.71	-2.08	0.61	0.726536
13409	dm3.chrX	6,395,224 – 6,395,352	- - - intron="intron;ID=intron_FBgn0259242:6_FBgn0259242:5;Name=CG42340-in;Parent=FBtr0299863;parent_type=mRNA" - - - -	18461	6,395,224 – 6,395,332	+	6	113	83.97	-2.28	0.62	0.862264
13409	dm3.chrX	6,395,224 – 6,395,352		18462	6,395,261 – 6,395,352	+	6	109	78.32	-1.84	0.54	0.591953
13410	dm3.chrX	6,397,743 – 6,397,811	- - - intron="intron;ID=intron_FBgn0259242:6_FBgn0259242:5;Name=CG42340-in;Parent=FBtr0299863;parent_type=mRNA" - - - -	18463	6,397,743 – 6,397,811	-	9	74	81.36	-1.56	0.61	0.654832
13411	dm3.chrX	6,399,499 – 6,399,653	- - - intron="intron;ID=intron_FBgn0259242:6_FBgn0259242:5;Name=CG42340-in;Parent=FBtr0299863;parent_type=mRNA" - - - -	18464	6,399,499 – 6,399,653	-	4	173	74.85	-0.71	0.81	0.560059
13412	dm3.chrX	6,410,494 – 6,410,594	- - - intron="intron;ID=intron_FBgn0259242:7_FBgn0259242:6;Name=CG42340-in;Parent=FBtr0299863;parent_type=mRNA" - - - -	18465	6,410,494 – 6,410,594	+	5	106	71.43	-2.02	0.46	0.864789
13412	dm3.chrX	6,410,494 – 6,410,594		18466	6,410,494 – 6,410,594	-	5	106	71.43	-1.36	0.51	0.535666
13413	dm3.chrX	6,418,759 – 6,418,855	- - CDS="CDS;ID=CDS_FBgn0029873:1_980;Name=CG3918-cds;Parent=FBtr0070912;parent_type=mRNA" - - - - -	18467	6,418,759 – 6,418,855	+	11	113	73.42	-1.45	0.48	0.813010
13414	dm3.chrX	6,428,453 – 6,428,562	- - CDS="CDS;ID=CDS_CG3929:1_909;Name=dx-cds;Parent=FBtr0070914;parent_type=mRNA" - - - - -	18468	6,428,453 – 6,428,562	-	5	109	92.75	-1.34	0.88	0.500000
13415	dm3.chrX	6,430,646 – 6,430,763	- - CDS="CDS;ID=CDS_CG3929:2_909;Name=dx-cds;Parent=FBtr0070914;parent_type=mRNA" - - - - -	18469	6,430,646 – 6,430,763	-	14	120	79.71	-1.87	0.41	0.571553
13416	dm3.chrX	6,444,449 – 6,444,559	- - - intron="intron;ID=intron_FBgn0085446:3_FBgn0085446:4;Name=CG34417-in;Parent=FBtr0303205;parent_type=mRNA" - - - -	18470	6,444,449 – 6,444,559	+	6	116	69.95	-0.93	0.52	0.684660
13417	dm3.chrX	6,445,271 – 6,445,366	- - - intron="intron;ID=intron_FBgn0085446:3_FBgn0085446:4;Name=CG34417-in;Parent=FBtr0303205;parent_type=mRNA" - - - -	18471	6,445,271 – 6,445,366	+	4	95	86.24	-2.81	0.62	0.910624
13418	dm3.chrX	6,445,699 – 6,445,850	- - - intron="intron;ID=intron_FBgn0085446:3_FBgn0085446:4;Name=CG34417-in;Parent=FBtr0303205;parent_type=mRNA" - - - -	18472	6,445,699 – 6,445,810	+	4	117	85.07	-1.88	0.79	0.851058
				18473	6,445,699 – 6,445,810	-	4	117	85.07	-2.13	0.71	0.819310
				18474	6,445,736 – 6,445,850	+	5	120	67.53	-1.38	0.44	0.599471
				18475	6,445,736 – 6,445,850	-	5	120	67.53	-1.48	0.41	0.547458
13419	dm3.chrX	6,446,255 – 6,446,369	- - - - - - - -	18476	6,446,255 – 6,446,369	+	9	130	69.09	-0.97	0.47	0.666921
13420	dm3.chrX	6,452,118 – 6,452,229	- - CDS="CDS;ID=CDS_FBgn0085446:8_1005;Name=CG34417-cds;Parent=FBtr0303206;parent_type=mRNA" - - - - -	18477	6,452,118 – 6,452,229	+	12	114	70.08	-1.86	0.38	0.931479
13421	dm3.chrX	6,468,113 – 6,468,173	- - - intron="intron;ID=intron_FBgn0085446:10_FBgn0085446:11;Name=CG34417-in;Parent=FBtr0301323;parent_type=mRNA" - - - -	18478	6,468,113 – 6,468,173	-	4	63	63.96	-0.52	0.66	0.692361
13422	dm3.chrX	6,468,925 – 6,468,984	- - - intron="intron;ID=intron_FBgn0085446:10_FBgn0085446:11;Name=CG34417-in;Parent=FBtr0301323;parent_type=mRNA" - - - -	18479	6,468,925 – 6,468,984	+	6	71	74.81	-1.57	0.54	0.509629
13423	dm3.chrX	6,470,342 – 6,470,466	- - - intron="intron;ID=intron_FBgn0085446:10_FBgn0085446:11;Name=CG34417-in;Parent=FBtr0301323;parent_type=mRNA" - - - -	18480	6,470,342 – 6,470,435	+	8	117	64.54	-1.88	0.51	0.991173
				18481	6,470,342 – 6,470,435	-	8	117	64.54	-2.10	0.58	0.998081
				18482	6,470,375 – 6,470,466	+	9	114	59.50	-2.46	0.28	0.985896
				18483	6,470,375 – 6,470,466	-	9	114	59.50	-1.27	0.32	0.651208
13424	dm3.chrX	6,472,491 – 6,472,600	- - - intron="intron;ID=intron_FBgn0085446:14_FBgn0085446:17;Name=CG34417-in;Parent=FBtr0301323;parent_type=mRNA" - - - -	18484	6,472,491 – 6,472,600	+	6	109	71.53	-1.67	0.50	0.935439
13424	dm3.chrX	6,472,491 – 6,472,600		18485	6,472,491 – 6,472,600	-	6	109	71.53	-1.73	0.54	0.969857
13425	dm3.chrX	6,482,619 – 6,482,709	- - - - - - - -	18486	6,482,619 – 6,482,709	-	3	90	94.81	-2.16	0.92	0.942312
13426	dm3.chrX	6,486,188 – 6,486,286	- - - intron="intron;ID=intron_CG10695:2_CG10695:3;Name=Pat1-in;Parent=FBtr0070945;parent_type=mRNA" - - - -	18487	6,486,188 – 6,486,286	+	3	98	84.78	-3.37	0.64	0.982207
13426	dm3.chrX	6,486,188 – 6,486,286		18488	6,486,188 – 6,486,286	-	3	98	84.78	-3.14	0.67	0.974721
13427	dm3.chrX	6,487,453 – 6,487,586	- - CDS="CDS;ID=CDS_CG10695:3_904;Name=Pat1-cds;Parent=FBtr0070945;parent_type=mRNA" - - - - -	18489	6,487,453 – 6,487,573	+	12	120	74.22	-1.49	0.44	0.769869
				18490	6,487,493 – 6,487,586	+	12	111	63.43	-0.93	0.35	0.532797
				18491	6,487,493 – 6,487,586	-	12	111	63.43	-1.23	0.33	0.704313
13428	dm3.chrX	6,493,172 – 6,493,291	- - CDS="CDS;ID=CDS_CG14444:5_955;Name=Apc7-cds;Parent=FBtr0070946;parent_type=mRNA" - - - - -	18492	6,493,172 – 6,493,291	+	6	120	69.72	-1.47	0.45	0.783619
13429	dm3.chrX	6,494,190 – 6,494,365	- - - - - - - -	18493	6,494,190 – 6,494,365	+	4	176	96.01	-2.21	0.79	0.619825
13429	dm3.chrX	6,494,190 – 6,494,365	- - - - - - - -	18494	6,494,190 – 6,494,365	-	4	176	96.01	-1.55	0.94	0.795255
13430	dm3.chrX	6,495,794 – 6,495,899	- - - intron="intron;ID=intron_CG3973:1_CG3973:2;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18495	6,495,794 – 6,495,899	+	4	105	80.33	-1.39	0.74	0.524718
13431	dm3.chrX	6,510,204 – 6,510,303	- - - intron="intron;ID=intron_CG3973:2_CG3973:3;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18496	6,510,204 – 6,510,303	+	5	103	85.69	-2.09	0.76	0.902458
13432	dm3.chrX	6,510,947 – 6,511,074	- - - intron="intron;ID=intron_CG3973:2_CG3973:3;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18497	6,510,947 – 6,510,999	+	6	53	92.36	-2.01	0.82	0.807348
13432	dm3.chrX	6,510,947 – 6,511,074		18498	6,510,999 – 6,511,074	-	5	75	97.02	-1.30	1.09	0.978949
13433	dm3.chrX	6,513,524 – 6,513,630	- - - intron="intron;ID=intron_CG3973:2_CG3973:3;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18499	6,513,524 – 6,513,630	-	7	110	73.70	-1.12	0.54	0.649917
13434	dm3.chrX	6,514,022 – 6,514,122	- - - intron="intron;ID=intron_CG3973:2_CG3973:3;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18500	6,514,022 – 6,514,122	+	8	107	73.01	-2.38	0.30	0.593201
13435	dm3.chrX	6,531,112 – 6,531,180	- - - intron="intron;ID=intron_CG3973:3_CG3973:4;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18501	6,531,112 – 6,531,180	+	5	69	97.95	-1.37	0.98	0.813474
13435	dm3.chrX	6,531,112 – 6,531,180		18502	6,531,112 – 6,531,180	-	5	69	97.95	-2.71	0.91	0.976449
13436	dm3.chrX	6,531,209 – 6,531,260	- - - intron="intron;ID=intron_CG3973:3_CG3973:4;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18503	6,531,209 – 6,531,260	+	5	53	92.28	-3.30	0.89	0.996199
13436	dm3.chrX	6,531,209 – 6,531,260		18504	6,531,209 – 6,531,260	-	5	53	92.28	-1.82	0.82	0.656988
13437	dm3.chrX	6,533,774 – 6,533,896	- - - intron="intron;ID=intron_CG3973:3_CG3973:4;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18505	6,533,774 – 6,533,889	-	5	119	90.84	-1.57	0.85	0.635614
13437	dm3.chrX	6,533,774 – 6,533,896		18506	6,533,783 – 6,533,896	-	4	113	87.35	-2.33	0.91	0.984641
13438	dm3.chrX	6,540,802 – 6,540,868	- - - intron="intron;ID=intron_CG3973:6_CG3973:7;Name=pigs-in;Parent=FBtr0070948;parent_type=mRNA" - - - -	18507	6,540,802 – 6,540,868	+	6	74	71.05	-2.52	0.28	0.608440
13439	dm3.chrX	6,548,653 – 6,548,755	- - - - - - - -	18508	6,548,653 – 6,548,755	+	6	118	79.26	-2.22	0.61	0.939059
13439	dm3.chrX	6,548,653 – 6,548,755	- - - - - - - -	18509	6,548,653 – 6,548,755	-	6	118	79.26	-2.04	0.81	0.982343
13440	dm3.chrX	6,586,019 – 6,586,155	- - - intron="intron;ID=intron_FBgn0029893:3_FBgn0029893:1;Name=CG14442-in;Parent=FBtr0070988;parent_type=mRNA" - - - -	18510	6,586,019 – 6,586,127	+	5	108	97.59	-2.11	0.92	0.917277
				18511	6,586,019 – 6,586,127	-	5	108	97.59	-3.11	0.99	0.996667
				18512	6,586,048 – 6,586,155	-	5	107	98.13	-1.74	0.99	0.939434
13441	dm3.chrX	6,587,942 – 6,588,033	- - - - - - - -	18513	6,587,942 – 6,588,033	-	11	99	83.84	-1.69	0.74	0.843951
13442	dm3.chrX	6,598,383 – 6,598,488	- - - intron="intron;ID=intron_FBgn0029895:1_FBgn0029895:2;Name=CG14441-in;Parent=FBtr0070959;parent_type=mRNA" - - - -	18514	6,598,383 – 6,598,488	-	5	108	89.28	-0.73	0.98	0.625266
13443	dm3.chrX	6,599,440 – 6,599,557	- - - intron="intron;ID=intron_FBgn0029895:1_FBgn0029895:2;Name=CG14441-in;Parent=FBtr0070959;parent_type=mRNA" - - - -	18515	6,599,440 – 6,599,557	-	5	117	93.68	-1.83	0.84	0.668414
13444	dm3.chrX	6,602,843 – 6,602,947	- - - intron="intron;ID=intron_FBgn0029895:1_FBgn0029895:2;Name=CG14441-in;Parent=FBtr0070959;parent_type=mRNA" - - - -	18516	6,602,843 – 6,602,947	-	6	105	72.06	-2.11	0.41	0.914441
13445	dm3.chrX	6,604,327 – 6,604,426	- - - intron="intron;ID=intron_FBgn0029895:2_FBgn0029895:3;Name=CG14441-in;Parent=FBtr0070959;parent_type=mRNA" - - - -	18517	6,604,327 – 6,604,426	+	5	111	76.81	-1.71	0.58	0.737113
13446	dm3.chrX	6,615,403 – 6,615,504	- - - - - - - -	18518	6,615,403 – 6,615,504	-	6	110	64.43	-1.90	0.47	0.989721
13447	dm3.chrX	6,615,677 – 6,615,767	- - CDS="CDS;ID=CDS_FBgn0029896:1_944;Name=CG3168-cds;Parent=FBtr0070984,FBtr0070985,FBtr0070986;parent_type=mRNA" - - - - -	18519	6,615,677 – 6,615,767	-	15	120	74.13	-1.45	0.54	0.787424
13448	dm3.chrX	6,618,445 – 6,618,513	- - - intron="intron;ID=intron_FBgn0029896:4_FBgn0029896:3;Name=CG3168-in;Parent=FBtr0070986;parent_type=mRNA" - - - -	18520	6,618,445 – 6,618,513	-	5	69	88.77	-2.26	0.78	0.898312
13449	dm3.chrX	6,619,813 – 6,619,896	- - - intron="intron;ID=intron_FBgn0029896:4_FBgn0029896:3;Name=CG3168-in;Parent=FBtr0070986;parent_type=mRNA" - - - -	18521	6,619,813 – 6,619,896	+	4	90	59.60	-1.22	0.41	0.595757
13450	dm3.chrX	6,629,827 – 6,629,935	- - - - - - - -	18522	6,629,827 – 6,629,935	-	6	116	75.37	-1.04	0.72	0.772651
13451	dm3.chrX	6,630,215 – 6,630,324	- - - - - - - -	18523	6,630,215 – 6,630,324	-	5	114	80.46	-1.84	0.57	0.500000
13452	dm3.chrX	6,630,850 – 6,630,918	- - - - - - - -	18524	6,630,850 – 6,630,918	-	7	73	72.05	-1.49	0.42	0.650819
13453	dm3.chrX	6,632,529 – 6,632,604	- - - - - - - -	18525	6,632,529 – 6,632,604	+	7	82	73.19	-2.25	0.44	0.898072
13453	dm3.chrX	6,632,529 – 6,632,604	- - - - - - - -	18526	6,632,529 – 6,632,604	-	7	82	73.19	-1.72	0.52	0.821120
13454	dm3.chrX	6,638,471 – 6,638,578	FBnoncoding="tRNA;ID=FBtr0070979;Name=tRNA:CR32740-RA;Parent=FBgn0052740;Alias=CR32740-RA;Dbxref=FlyBase_Annotation_IDs:CR32740-RA;score_text=Weakly" tRNAscann="Phe_chrX_trna25" - - "Rfam_10.0=RF00005;tRNA;AAPN01177114.1/5440-5512\|2.8e-26" - - -	18527	6,638,471 – 6,638,578	+	11	112	82.38	-2.80	0.98	0.997590
13454	dm3.chrX	6,638,471 – 6,638,578		18528	6,638,471 – 6,638,578	-	11	112	82.38	-0.97	0.94	0.884714
13455	dm3.chrX	6,640,800 – 6,640,991	- - - - - - - -	18529	6,640,800 – 6,640,911	+	5	114	76.96	-2.44	0.65	0.981764
				18530	6,640,840 – 6,640,951	+	5	114	77.55	-2.13	0.47	0.629301
				18531	6,640,879 – 6,640,991	+	5	115	68.95	-2.36	0.39	0.939998
				18532	6,640,879 – 6,640,991	-	5	115	68.95	-1.83	0.48	0.924682
13456	dm3.chrX	6,642,307 – 6,642,399	- - - intron="intron;ID=intron_FBgn0029898:3_FBgn0029898:4;Name=CG14439-in;Parent=FBtr0302357;parent_type=mRNA" - - - -	18533	6,642,307 – 6,642,399	-	3	106	76.19	-1.56	0.74	0.772950
13457	dm3.chrX	6,643,690 – 6,643,769	- - - intron="intron;ID=intron_FBgn0029898:3_FBgn0029898:4;Name=CG14439-in;Parent=FBtr0302357;parent_type=mRNA" - - - -	18534	6,643,690 – 6,643,769	+	10	90	69.57	-1.90	0.32	0.642474
13457	dm3.chrX	6,643,690 – 6,643,769		18535	6,643,690 – 6,643,769	-	10	90	69.57	-1.87	0.32	0.615748
13458	dm3.chrX	6,664,857 – 6,664,955	- - - - - - - -	18536	6,664,857 – 6,664,955	+	4	116	52.49	-1.13	0.35	0.663157
13458	dm3.chrX	6,664,857 – 6,664,955	- - - - - - - -	18537	6,664,857 – 6,664,955	-	4	116	52.49	-1.08	0.35	0.618146
13459	dm3.chrX	6,669,032 – 6,669,090	- - - intron="intron;ID=intron_CG3135:1_CG3135:2;Name=shf-in;Parent=FBtr0070978;parent_type=mRNA" - - - -	18538	6,669,032 – 6,669,090	-	4	58	70.69	-1.68	0.64	0.954288
13460	dm3.chrX	6,673,240 – 6,673,370	- - - intron="intron;ID=intron_CG3135:1_CG3135:2;Name=shf-in;Parent=FBtr0070978;parent_type=mRNA" - - - -	18539	6,673,240 – 6,673,330	-	4	121	73.13	-2.17	0.62	0.979874
13460	dm3.chrX	6,673,240 – 6,673,370		18540	6,673,260 – 6,673,370	-	5	120	84.78	-1.95	0.65	0.590893
13461	dm3.chrX	6,688,570 – 6,688,690	- - - intron="intron;ID=intron_FBgn0259228:16_FBgn0259228:15;Name=C3G-in;Parent=FBtr0299792,FBtr0299795;parent_type=mRNA" - - - -	18541	6,688,570 – 6,688,690	-	5	120	91.17	-1.93	0.84	0.829323
13462	dm3.chrX	6,689,133 – 6,689,188	- - - intron="intron;ID=intron_FBgn0259228:16_FBgn0259228:15;Name=C3G-in;Parent=FBtr0299792,FBtr0299795;parent_type=mRNA" - - - -	18542	6,689,133 – 6,689,188	+	7	59	79.68	-1.66	0.73	0.919611
13462	dm3.chrX	6,689,133 – 6,689,188		18543	6,689,133 – 6,689,188	-	7	59	79.68	-1.28	0.68	0.619106
13463	dm3.chrX	6,699,450 – 6,699,565	- - - intron="intron;ID=intron_FBgn0029903:4_FBgn0029903:6;Name=pod1-in;Parent=FBtr0070967;parent_type=mRNA" - - - -	18544	6,699,450 – 6,699,565	+	6	121	78.49	-1.28	0.64	0.594124
13464	dm3.chrX	6,707,873 – 6,707,937	- - - - - - - -	18545	6,707,873 – 6,707,937	-	5	64	62.38	-1.46	0.47	0.969775
13465	dm3.chrX	6,716,939 – 6,717,054	- - - - - - - -	18546	6,716,939 – 6,717,054	+	10	116	61.78	-1.22	0.48	0.983982
13465	dm3.chrX	6,716,939 – 6,717,054	- - - - - - - -	18547	6,716,939 – 6,717,054	-	10	116	61.78	-0.94	0.48	0.954287
13466	dm3.chrX	6,721,833 – 6,721,940	- - CDS="CDS;ID=CDS_CG32743:4_893;Name=Smg1-cds;Parent=FBtr0070972;parent_type=mRNA" - - - - -	18548	6,721,833 – 6,721,940	+	14	115	60.48	-1.41	0.26	0.732072
13467	dm3.chrX	6,732,906 – 6,732,999	- - - - - - - -	18549	6,732,906 – 6,732,999	+	5	93	89.96	-1.62	0.96	0.939229
13467	dm3.chrX	6,732,906 – 6,732,999	- - - - - - - -	18550	6,732,906 – 6,732,999	-	5	93	89.96	-2.33	0.71	0.735859
13468	dm3.chrX	6,734,125 – 6,734,235	- - - - - - - -	18551	6,734,125 – 6,734,235	-	5	120	84.92	-2.31	0.78	0.959365
13469	dm3.chrX	6,736,886 – 6,737,059	- - CDS="CDS;ID=CDS_FBgn0029911:8_964;Name=CG14435-cds;Parent=FBtr0071042;parent_type=mRNA" - - - - -	18552	6,736,886 – 6,736,991	+	5	107	68.19	-0.96	0.61	0.868249
				18553	6,736,886 – 6,736,991	-	5	107	68.19	-0.78	0.54	0.546468
				18554	6,736,954 – 6,737,059	+	10	115	63.05	-1.54	0.30	0.740083
				18555	6,736,954 – 6,737,059	-	10	115	63.05	-1.49	0.35	0.889818
13470	dm3.chrX	6,745,009 – 6,745,115	- - CDS="CDS;ID=CDS_FBgn0029914:1_962;Name=CG4558-cds;Parent=FBtr0300177;parent_type=mRNA" - - - - -	18556	6,745,009 – 6,745,115	+	12	111	66.40	-0.90	0.38	0.543974
13471	dm3.chrX	6,753,180 – 6,753,296	- - - - - - - -	18557	6,753,180 – 6,753,296	-	5	116	81.93	-2.20	0.72	0.949715
13472	dm3.chrX	6,755,670 – 6,755,763	- - - - - - - -	18558	6,755,670 – 6,755,763	-	5	93	90.35	-1.49	0.91	0.818562
13473	dm3.chrX	6,765,684 – 6,765,774	- - - intron="intron;ID=intron_CG33692:4_CG33692:5;Name=CG33692-in;Parent=FBtr0091675;parent_type=mRNA" - - - -	18559	6,765,684 – 6,765,774	-	5	95	90.96	-3.12	0.73	0.974222
13474	dm3.chrX	6,767,291 – 6,767,341	- - - intron="intron;ID=intron_CG33692:5_CG33692:6;Name=CG33692-in;Parent=FBtr0091675;parent_type=mRNA" - - - -	18560	6,767,291 – 6,767,341	+	4	55	91.43	-0.81	1.00	0.697660
13474	dm3.chrX	6,767,291 – 6,767,341		18561	6,767,291 – 6,767,341	-	4	55	91.43	-1.02	1.00	0.818148
13475	dm3.chrX	6,780,545 – 6,780,655	- - - - - - - -	18562	6,780,545 – 6,780,655	+	8	113	82.91	-2.47	0.42	0.565599
13476	dm3.chrX	6,782,078 – 6,782,134	- - - - - - - -	18563	6,782,078 – 6,782,134	+	5	59	80.88	-1.25	0.79	0.689654
13477	dm3.chrX	6,784,049 – 6,784,192	- - - - - - - -	18564	6,784,049 – 6,784,192	+	11	164	72.22	-2.56	0.48	0.995302
13477	dm3.chrX	6,784,049 – 6,784,192	- - - - - - - -	18565	6,784,049 – 6,784,192	-	11	164	72.22	-2.03	0.46	0.961454
13478	dm3.chrX	6,795,125 – 6,795,216	- - - - - - - -	18566	6,795,125 – 6,795,216	+	5	99	73.71	-1.31	0.58	0.627657
13479	dm3.chrX	6,799,744 – 6,799,845	- - - - - - - -	18567	6,799,744 – 6,799,845	+	3	106	61.64	-1.18	0.49	0.606811
13480	dm3.chrX	6,806,672 – 6,806,765	- - - - - - - -	18568	6,806,672 – 6,806,765	+	8	110	66.96	-2.15	0.44	0.993082
13480	dm3.chrX	6,806,672 – 6,806,765	- - - - - - - -	18569	6,806,672 – 6,806,765	-	8	110	66.96	-1.81	0.38	0.928241
13481	dm3.chrX	6,810,065 – 6,810,149	- - - - - - - -	18570	6,810,065 – 6,810,149	+	4	84	78.65	-2.00	0.56	0.589071
13482	dm3.chrX	6,812,433 – 6,812,566	- - - intron="intron;ID=intron_FBgn0029922:1_FBgn0029922:2;Name=CG14431-in;Parent=FBtr0304108;parent_type=mRNA" - - - -	18571	6,812,433 – 6,812,526	+	4	94	82.87	-2.97	0.64	0.979155
				18572	6,812,433 – 6,812,526	-	4	94	82.87	-2.35	0.66	0.886336
				18573	6,812,449 – 6,812,566	+	5	123	75.73	-2.46	0.47	0.919848
				18574	6,812,449 – 6,812,566	-	5	123	75.73	-3.20	0.58	0.997863
13483	dm3.chrX	6,814,958 – 6,815,054	- - - intron="intron;ID=intron_FBgn0029922:1_FBgn0029922:2;Name=CG14431-in;Parent=FBtr0304108;parent_type=mRNA" - - - -	18575	6,814,958 – 6,815,054	-	12	120	85.03	-2.71	0.73	0.985545
13484	dm3.chrX	6,831,189 – 6,831,258	- - - intron="intron;ID=intron_FBgn0029922:1_FBgn0029922:2;Name=CG14431-in;Parent=FBtr0304108;parent_type=mRNA" - - - -	18576	6,831,189 – 6,831,258	+	12	78	86.41	-1.57	0.87	0.894080
13485	dm3.chrX	6,837,432 – 6,837,541	- - - intron="intron;ID=intron_FBgn0029922:1_FBgn0029922:2;Name=CG14431-in;Parent=FBtr0304108;parent_type=mRNA" - - - -	18577	6,837,432 – 6,837,541	+	5	118	73.63	-2.15	0.41	0.755635
13486	dm3.chrX	6,837,613 – 6,837,713	- - - intron="intron;ID=intron_FBgn0029922:1_FBgn0029922:2;Name=CG14431-in;Parent=FBtr0304108;parent_type=mRNA" - - - -	18578	6,837,613 – 6,837,713	-	5	118	67.11	-2.08	0.40	0.865277
13487	dm3.chrX	6,840,823 – 6,840,918	- - - intron="intron;ID=intron_FBgn0029922:1_FBgn0029922:2;Name=CG14431-in;Parent=FBtr0304108;parent_type=mRNA" - - - -	18579	6,840,823 – 6,840,918	+	6	99	85.54	-1.80	0.73	0.760805
13488	dm3.chrX	6,844,012 – 6,844,108	- - - intron="intron;ID=intron_FBgn0029922:1_FBgn0029922:2;Name=CG14431-in;Parent=FBtr0304108;parent_type=mRNA" - - - -	18580	6,844,012 – 6,844,108	-	8	111	67.70	-1.19	0.50	0.883116
13489	dm3.chrX	6,874,902 – 6,874,967	- - - - - - - -	18581	6,874,902 – 6,874,967	-	5	65	91.23	-1.90	0.89	0.911065
13490	dm3.chrX	6,876,736 – 6,876,844	- - - - - - - -	18582	6,876,736 – 6,876,844	-	5	108	86.02	-1.88	0.81	0.896593
13491	dm3.chrX	6,879,265 – 6,879,329	- - - - - - - -	18583	6,879,265 – 6,879,329	-	7	65	76.01	-1.04	0.56	0.500000
13492	dm3.chrX	6,881,954 – 6,882,027	- - - - - - - -	18584	6,881,954 – 6,882,027	+	12	84	80.73	-2.17	0.50	0.700363
13492	dm3.chrX	6,881,954 – 6,882,027	- - - - - - - -	18585	6,881,954 – 6,882,027	-	12	84	80.73	-1.38	0.72	0.717425
13493	dm3.chrX	6,884,847 – 6,884,940	- - - - - - - -	18586	6,884,847 – 6,884,940	-	9	114	63.39	-1.14	0.44	0.862596
13494	dm3.chrX	6,901,579 – 6,901,703	- - - intron="intron;ID=intron_FBgn0027106:5_FBgn0027106:4;Name=inx7-in;Parent=FBtr0071034;parent_type=mRNA" - - - -	18587	6,901,579 – 6,901,672	-	7	113	65.34	-2.20	0.45	0.990095
13494	dm3.chrX	6,901,579 – 6,901,703		18588	6,901,611 – 6,901,703	+	6	114	63.68	-1.20	0.42	0.605895
13495	dm3.chrX	6,910,597 – 6,910,687	- - - - - - - -	18589	6,910,597 – 6,910,687	-	5	96	72.62	-2.27	0.71	0.996649
13496	dm3.chrX	6,914,818 – 6,914,924	- - - - - - - -	18590	6,914,818 – 6,914,924	+	4	110	65.90	-1.68	0.37	0.511040
13497	dm3.chrX	6,939,761 – 6,939,866	- - - intron="intron;ID=intron_FBgn0029930:7_FBgn0029930:6;Name=CG12541-in;Parent=FBtr0300759;parent_type=mRNA" - - - -	18591	6,939,761 – 6,939,866	-	6	117	68.99	-1.71	0.61	0.986188
13498	dm3.chrX	6,941,126 – 6,941,231	- - - intron="intron;ID=intron_FBgn0029930:7_FBgn0029930:6;Name=CG12541-in;Parent=FBtr0300759;parent_type=mRNA" - - - -	18592	6,941,126 – 6,941,231	-	6	116	78.74	-1.68	0.61	0.749283
13499	dm3.chrX	6,943,116 – 6,943,209	- - - intron="intron;ID=intron_FBgn0029930:7_FBgn0029930:6;Name=CG12541-in;Parent=FBtr0300759;parent_type=mRNA" - - - -	18593	6,943,116 – 6,943,209	+	6	95	65.22	-1.62	0.35	0.747542
13499	dm3.chrX	6,943,116 – 6,943,209		18594	6,943,116 – 6,943,209	-	6	95	65.22	-1.84	0.34	0.847346
13500	dm3.chrX	6,954,600 – 6,954,697	- - - intron="intron;ID=intron_FBgn0029930:7_FBgn0029930:6;Name=CG12541-in;Parent=FBtr0300759;parent_type=mRNA" - - - -	18595	6,954,600 – 6,954,697	+	6	107	74.17	-1.07	0.68	0.732256
13501	dm3.chrX	6,958,237 – 6,958,348	- - - intron="intron;ID=intron_FBgn0029930:7_FBgn0029930:6;Name=CG12541-in;Parent=FBtr0300759;parent_type=mRNA" - - - -	18596	6,958,237 – 6,958,348	-	4	119	73.48	-2.10	0.44	0.718630
13502	dm3.chrX	6,961,734 – 6,961,799	- - - - - - - -	18597	6,961,734 – 6,961,799	+	6	65	65.95	-2.98	0.54	0.999872
13503	dm3.chrX	6,980,362 – 6,980,458	- - - intron="intron;ID=intron_FBgn0029933:9_FBgn0029933:8;Name=CG14425-in;Parent=FBtr0300771;parent_type=mRNA" - - - -	18598	6,980,362 – 6,980,458	+	8	111	67.37	-1.04	0.46	0.720191
13504	dm3.chrX	6,988,436 – 6,988,538	- - - intron="intron;ID=intron_FBgn0003659:21_FBgn0003659:17;Name=Sxl-in;Parent=FBtr0300839;parent_type=mRNA" - - - -	18599	6,988,436 – 6,988,538	+	5	105	92.54	-1.81	0.80	0.540490
13505	dm3.chrX	6,990,612 – 6,990,662	- - - intron="intron;ID=intron_FBgn0003659:21_FBgn0003659:17;Name=Sxl-in;Parent=FBtr0300839;parent_type=mRNA" - - - -	18600	6,990,612 – 6,990,662	-	4	50	64.67	-1.12	0.54	0.840469
13506	dm3.chrX	7,012,198 – 7,012,264	- - - - - - - -	18601	7,012,198 – 7,012,264	+	4	66	94.70	-1.68	0.91	0.793640
13507	dm3.chrX	7,028,572 – 7,028,630	- - - - - - - -	18602	7,028,572 – 7,028,630	+	4	60	71.14	-1.65	0.67	0.940184
13507	dm3.chrX	7,028,572 – 7,028,630	- - - - - - - -	18603	7,028,572 – 7,028,630	-	4	60	71.14	-1.33	0.56	0.533383
13508	dm3.chrX	7,032,140 – 7,032,212	- - - - - - - -	18604	7,032,140 – 7,032,212	-	3	72	90.74	-1.85	0.97	0.963813
13509	dm3.chrX	7,042,164 – 7,042,258	FBnoncoding="ncRNA;ID=FBtr0071016;Name=CR32730-RA;Parent=FBgn0047092;Alias=CG:X.3:tmp:78-RA;Dbxref=FlyBase_Annotation_IDs:CR32730-RA,REFSEQ:NR_002102;score_text=Moderately" - - - - - - -	18605	7,042,164 – 7,042,258	-	11	100	83.64	-2.18	0.66	0.938936
13510	dm3.chrX	7,053,083 – 7,053,177	- - - - - - - -	18606	7,053,083 – 7,053,177	-	5	96	89.46	-2.15	0.68	0.551923
13511	dm3.chrX	7,057,627 – 7,057,734	- - - - - - - -	18607	7,057,627 – 7,057,734	+	5	111	93.92	-1.44	0.91	0.677174
13512	dm3.chrX	7,080,665 – 7,080,722	- - - - - - - -	18608	7,080,665 – 7,080,722	+	5	61	85.67	-2.49	0.54	0.636785
13513	dm3.chrX	7,084,507 – 7,084,599	- - - - - - - -	18609	7,084,507 – 7,084,599	+	6	95	72.57	-1.37	0.54	0.837035
13514	dm3.chrX	7,087,389 – 7,087,489	- - - intron="intron;ID=intron_FBgn0029939:1_FBgn0029939:2;Name=CG9650-in;Parent=FBtr0301240;parent_type=mRNA" - - - -	18610	7,087,389 – 7,087,489	+	4	107	94.20	-1.72	0.99	0.955215
13515	dm3.chrX	7,089,042 – 7,089,137	- - - intron="intron;ID=intron_FBgn0029939:1_FBgn0029939:2;Name=CG9650-in;Parent=FBtr0301240;parent_type=mRNA" - - - -	18611	7,089,042 – 7,089,137	-	5	95	94.21	-2.09	0.84	0.815486
13516	dm3.chrX	7,092,189 – 7,092,241	- - - intron="intron;ID=intron_FBgn0029939:1_FBgn0029939:2;Name=CG9650-in;Parent=FBtr0301240;parent_type=mRNA" - - - -	18612	7,092,189 – 7,092,241	+	8	53	84.04	-1.82	0.72	0.843211
13517	dm3.chrX	7,106,134 – 7,106,228	- - - intron="intron;ID=intron_FBgn0029939:1_FBgn0029939:2;Name=CG9650-in;Parent=FBtr0301240;parent_type=mRNA" - - - -	18613	7,106,134 – 7,106,228	+	11	110	72.80	-0.85	0.64	0.734924
13518	dm3.chrX	7,132,140 – 7,132,252	- - CDS="CDS;ID=CDS_FBgn0029939:6_969;Name=CG9650-cds;Parent=FBtr0301240,FBtr0301241;parent_type=mRNA" - - - - -	18614	7,132,140 – 7,132,252	+	13	128	70.43	-2.08	0.24	0.587142
13519	dm3.chrX	7,145,355 – 7,145,449	- - - - - - - -	18615	7,145,355 – 7,145,449	+	5	97	64.76	-2.14	0.35	0.867368
13520	dm3.chrX	7,154,602 – 7,154,701	- - - - - - - -	18616	7,154,602 – 7,154,701	+	3	99	76.49	-2.74	0.59	0.965203
13521	dm3.chrX	7,172,717 – 7,172,845	- - - - - - - -	18617	7,172,717 – 7,172,845	-	7	129	78.69	-2.19	0.47	0.849650
13522	dm3.chrX	7,178,850 – 7,178,964	- - - intron="intron;ID=intron_FBgn0029941:6_FBgn0029941:5;Name=CG1677-in;Parent=FBtr0089712;parent_type=mRNA" - - - -	18618	7,178,850 – 7,178,964	+	7	129	59.61	-0.92	0.37	0.601043
13523	dm3.chrX	7,191,891 – 7,191,987	- - - - - - - -	18619	7,191,891 – 7,191,987	+	5	118	81.43	-1.65	0.81	0.869686
13524	dm3.chrX	7,195,552 – 7,195,663	- - - - - - - -	18620	7,195,552 – 7,195,663	-	6	118	70.29	-1.53	0.41	0.638056
13525	dm3.chrX	7,200,098 – 7,200,259	- - - - - - - -	18621	7,200,098 – 7,200,189	+	5	92	67.22	-0.78	0.64	0.800120
				18622	7,200,151 – 7,200,259	+	5	114	81.16	-1.57	0.76	0.830948
				18623	7,200,151 – 7,200,259	-	5	114	81.16	-1.97	0.59	0.699804
13526	dm3.chrX	7,201,625 – 7,201,718	- - - - - - - -	18624	7,201,625 – 7,201,718	+	6	105	87.35	-2.16	0.76	0.888365
13527	dm3.chrX	7,229,705 – 7,229,812	- - - - - - - -	18625	7,229,705 – 7,229,812	+	3	107	84.97	-1.37	0.83	0.500000
13527	dm3.chrX	7,229,705 – 7,229,812	- - - - - - - -	18626	7,229,705 – 7,229,812	-	3	107	84.97	-1.93	0.93	0.965898
13528	dm3.chrX	7,236,255 – 7,236,345	- - - - - - - -	18627	7,236,255 – 7,236,345	-	5	106	74.14	-1.77	0.60	0.842847
13529	dm3.chrX	7,238,463 – 7,238,589	- - - - - - - -	18628	7,238,463 – 7,238,589	+	11	131	76.23	-1.42	0.54	0.761539
13530	dm3.chrX	7,247,240 – 7,247,306	- - - - - - - -	18629	7,247,240 – 7,247,306	-	6	66	98.69	-1.09	0.97	0.562150
13531	dm3.chrX	7,248,877 – 7,248,988	- - - - - - - -	18630	7,248,877 – 7,248,983	+	7	111	69.10	-1.88	0.69	0.997246
				18631	7,248,877 – 7,248,983	-	7	111	69.10	-1.46	0.56	0.968261
				18632	7,248,881 – 7,248,988	+	7	112	66.93	-2.24	0.58	0.998944
				18633	7,248,881 – 7,248,988	-	7	112	66.93	-1.78	0.57	0.995359
13532	dm3.chrX	7,249,691 – 7,249,797	- - - - - - - -	18634	7,249,691 – 7,249,797	+	11	111	67.86	-1.19	0.43	0.887103
13533	dm3.chrX	7,257,776 – 7,257,977	- - - - - - - -	18635	7,257,776 – 7,257,873	-	7	100	76.93	-1.55	0.52	0.585149
13533	dm3.chrX	7,257,776 – 7,257,977	- - - - - - - -	18636	7,257,873 – 7,257,977	+	10	107	70.11	-0.51	0.53	0.639528
13534	dm3.chrX	7,260,733 – 7,260,836	- - - - - - - -	18637	7,260,733 – 7,260,836	-	4	107	66.04	-1.77	0.34	0.507056
13535	dm3.chrX	7,262,703 – 7,262,845	- - - - - - - -	18638	7,262,703 – 7,262,845	-	5	168	83.00	-2.30	0.63	0.851494
13536	dm3.chrX	7,275,616 – 7,275,729	- - - - - - - -	18639	7,275,616 – 7,275,729	-	6	124	66.95	-1.28	0.44	0.742648
13537	dm3.chrX	7,276,009 – 7,276,100	- - - - - - - -	18640	7,276,009 – 7,276,100	+	9	99	68.56	-1.34	0.43	0.834131
13537	dm3.chrX	7,276,009 – 7,276,100	- - - - - - - -	18641	7,276,009 – 7,276,100	-	9	99	68.56	-2.72	0.52	0.999517
13538	dm3.chrX	7,278,255 – 7,278,346	- - - - - - - -	18642	7,278,255 – 7,278,346	-	7	99	72.42	-1.28	0.51	0.744172
13539	dm3.chrX	7,278,618 – 7,278,715	- - - - - - - -	18643	7,278,618 – 7,278,715	+	3	97	95.85	-2.51	0.99	0.991431
13540	dm3.chrX	7,284,286 – 7,284,398	- - - - - - - -	18644	7,284,286 – 7,284,398	+	4	112	65.31	-1.31	0.51	0.740893
13541	dm3.chrX	7,284,583 – 7,284,689	- - - - - - - -	18645	7,284,583 – 7,284,689	+	9	109	81.34	-1.31	0.68	0.614744
13542	dm3.chrX	7,299,685 – 7,299,805	- - - - - - - -	18646	7,299,685 – 7,299,805	+	3	120	90.56	-2.61	0.89	0.982828
13543	dm3.chrX	7,300,819 – 7,300,873	- - - - - - - -	18647	7,300,819 – 7,300,873	+	8	58	88.64	-2.23	0.70	0.791668
13544	dm3.chrX	7,312,883 – 7,312,988	- - CDS="CDS;ID=CDS_FBgn0029950:1_936;Name=CG9657-cds;Parent=FBtr0071057;parent_type=mRNA" - - - - -	18648	7,312,883 – 7,312,988	+	13	120	70.92	-1.24	0.41	0.618763
13545	dm3.chrX	7,322,104 – 7,322,211	- - - - - - - -	18649	7,322,104 – 7,322,211	+	12	112	78.65	-1.64	0.49	0.590842
13546	dm3.chrX	7,323,457 – 7,323,549	- - - - - - - -	18650	7,323,457 – 7,323,549	+	8	93	89.00	-1.35	0.86	0.681814
13547	dm3.chrX	7,326,609 – 7,326,707	- - - - - - - -	18651	7,326,609 – 7,326,707	-	8	98	62.46	-0.97	0.37	0.700722
13548	dm3.chrX	7,331,156 – 7,331,256	- - - - - - - -	18652	7,331,156 – 7,331,256	+	9	121	68.64	-1.51	0.57	0.980591
13549	dm3.chrX	7,333,680 – 7,333,779	- - - - - - - -	18653	7,333,680 – 7,333,779	-	10	101	78.52	-2.15	0.46	0.876749
13550	dm3.chrX	7,337,842 – 7,337,976	- - - - - - - -	18654	7,337,842 – 7,337,976	+	6	157	68.10	-2.28	0.46	0.988343
13550	dm3.chrX	7,337,842 – 7,337,976	- - - - - - - -	18655	7,337,842 – 7,337,976	-	6	157	68.10	-1.55	0.44	0.804042
13551	dm3.chrX	7,349,140 – 7,349,264	- - - - - - - -	18656	7,349,140 – 7,349,233	+	8	100	78.87	-1.87	0.54	0.810466
13551	dm3.chrX	7,349,140 – 7,349,264	- - - - - - - -	18657	7,349,163 – 7,349,264	+	7	111	78.28	-1.78	0.69	0.936761
13552	dm3.chrX	7,356,662 – 7,356,776	- - - - - - - -	18658	7,356,662 – 7,356,759	+	8	102	84.85	-1.78	0.68	0.721090
13552	dm3.chrX	7,356,662 – 7,356,776	- - - - - - - -	18659	7,356,682 – 7,356,776	+	8	102	88.13	-2.13	0.65	0.611318
13553	dm3.chrX	7,369,356 – 7,369,447	- - - - - - - -	18660	7,369,356 – 7,369,447	-	11	110	64.51	-0.87	0.41	0.657764
13554	dm3.chrX	7,377,494 – 7,377,597	- - - - - - - -	18661	7,377,494 – 7,377,597	+	11	112	80.07	-2.74	0.57	0.992670
13555	dm3.chrX	7,402,489 – 7,402,558	- - - - - - - -	18662	7,402,489 – 7,402,558	-	11	70	91.00	-1.67	0.82	0.731113
13556	dm3.chrX	7,407,321 – 7,407,386	- - - - - - - -	18663	7,407,321 – 7,407,386	-	5	69	66.82	-0.46	0.73	0.725959
13557	dm3.chrX	7,408,566 – 7,408,710	- - - - - - - -	18664	7,408,566 – 7,408,710	-	8	145	86.72	-2.37	0.77	0.967455
13558	dm3.chrX	7,409,594 – 7,409,684	- - - - - - - -	18665	7,409,594 – 7,409,684	+	7	99	73.90	-2.39	0.57	0.992536
13559	dm3.chrX	7,410,570 – 7,410,662	- - - - - - - -	18666	7,410,570 – 7,410,662	-	11	98	77.35	-0.99	0.64	0.698915
13560	dm3.chrX	7,417,750 – 7,417,870	- - - - - - - -	18667	7,417,750 – 7,417,870	+	3	120	91.09	-1.81	0.83	0.656958
13560	dm3.chrX	7,417,750 – 7,417,870	- - - - - - - -	18668	7,417,750 – 7,417,870	-	3	120	91.09	-2.91	0.88	0.989994
13561	dm3.chrX	7,420,460 – 7,420,527	- - - - - - - -	18669	7,420,460 – 7,420,527	+	7	77	81.72	-1.88	0.62	0.641899
13562	dm3.chrX	7,430,574 – 7,430,683	- - CDS="CDS;ID=CDS_FBgn0052720:1_1021;Name=CG32720-cds;Parent=FBtr0304870;parent_type=mRNA" - - - - -	18670	7,430,574 – 7,430,683	-	6	115	72.13	-1.52	0.44	0.551487
13563	dm3.chrX	7,445,204 – 7,445,301	- - - - - - - -	18671	7,445,204 – 7,445,301	+	10	110	78.81	-1.42	0.67	0.788790
13563	dm3.chrX	7,445,204 – 7,445,301	- - - - - - - -	18672	7,445,204 – 7,445,301	-	10	110	78.81	-1.16	0.66	0.550782
13564	dm3.chrX	7,452,038 – 7,452,179	- - - - - - - -	18673	7,452,038 – 7,452,179	-	7	164	79.28	-2.52	0.52	0.946099
13565	dm3.chrX	7,458,589 – 7,458,681	- - - - - - - -	18674	7,458,589 – 7,458,681	-	12	117	93.47	-1.85	0.88	0.850616
13566	dm3.chrX	7,464,586 – 7,464,639	- - - - - - - -	18675	7,464,586 – 7,464,639	+	7	63	74.16	-2.14	0.50	0.939471
13567	dm3.chrX	7,465,839 – 7,465,935	- - - - - - - -	18676	7,465,839 – 7,465,935	+	12	115	76.90	-2.38	0.58	0.978988
13567	dm3.chrX	7,465,839 – 7,465,935	- - - - - - - -	18677	7,465,839 – 7,465,935	-	12	115	76.90	-2.47	0.74	0.995597
13568	dm3.chrX	7,470,279 – 7,470,375	- - CDS="CDS;ID=CDS_FBgn0029951:1_982;Name=CG11369-cds;Parent=FBtr0071067;parent_type=mRNA" - - - - -	18678	7,470,279 – 7,470,375	-	8	97	62.20	-0.64	0.41	0.699935
13569	dm3.chrX	7,475,887 – 7,475,981	- - - - - - - -	18679	7,475,887 – 7,475,979	+	11	93	92.12	-2.60	0.81	0.960874
13569	dm3.chrX	7,475,887 – 7,475,981	- - - - - - - -	18680	7,475,889 – 7,475,981	+	11	93	91.17	-2.20	0.84	0.935200
13570	dm3.chrX	7,480,839 – 7,480,931	- - - - - - - -	18681	7,480,839 – 7,480,931	+	11	100	71.91	-1.50	0.53	0.961815
13571	dm3.chrX	7,482,071 – 7,482,163	- - - - - - - -	18682	7,482,071 – 7,482,163	+	5	120	72.77	-2.13	0.74	0.989485
13571	dm3.chrX	7,482,071 – 7,482,163	- - - - - - - -	18683	7,482,071 – 7,482,163	-	5	120	72.77	-1.40	0.82	0.944859
13572	dm3.chrX	7,489,543 – 7,489,631	- - - - - - - -	18684	7,489,543 – 7,489,631	-	7	101	74.03	-1.32	0.58	0.734019
13573	dm3.chrX	7,493,395 – 7,493,451	- - - - - - - -	18685	7,493,395 – 7,493,451	+	5	56	99.29	-1.02	1.01	0.725274
13574	dm3.chrX	7,503,852 – 7,503,947	- - - intron="intron;ID=intron_FBgn0004198:1_FBgn0004198:2;Name=ct-in;Parent=FBtr0114613;parent_type=mRNA" - - - -	18686	7,503,852 – 7,503,947	-	3	105	81.37	-1.54	0.83	0.782032
13575	dm3.chrX	7,530,608 – 7,530,698	- - - intron="intron;ID=intron_FBgn0004198:4_FBgn0004198:6;Name=ct-in;Parent=FBtr0071069;parent_type=mRNA" - - - -	18687	7,530,608 – 7,530,698	-	5	105	73.95	-1.22	0.58	0.588635
13576	dm3.chrX	7,539,514 – 7,539,575	- - - intron="intron;ID=intron_FBgn0004198:4_FBgn0004198:6;Name=ct-in;Parent=FBtr0071069;parent_type=mRNA" - - - -	18688	7,539,514 – 7,539,575	+	11	61	99.70	-1.39	0.97	0.743049
13576	dm3.chrX	7,539,514 – 7,539,575		18689	7,539,514 – 7,539,575	-	11	61	99.70	-1.32	1.00	0.830180
13577	dm3.chrX	7,542,697 – 7,542,804	- - - intron="intron;ID=intron_FBgn0004198:5_FBgn0004198:7;Name=ct-in;Parent=FBtr0071068,FBtr0114613,FBtr0305134;parent_type=mRNA" - - - -	18690	7,542,697 – 7,542,804	-	3	107	91.48	-2.15	0.78	0.700202
13578	dm3.chrX	7,548,400 – 7,548,506	- - - intron="intron;ID=intron_FBgn0004198:5_FBgn0004198:7;Name=ct-in;Parent=FBtr0071068,FBtr0114613,FBtr0305134;parent_type=mRNA" - - - -	18691	7,548,400 – 7,548,506	+	8	116	66.72	-1.74	0.52	0.992210
13579	dm3.chrX	7,551,854 – 7,551,913	- - - intron="intron;ID=intron_FBgn0004198:5_FBgn0004198:7;Name=ct-in;Parent=FBtr0071068,FBtr0114613,FBtr0305134;parent_type=mRNA" - - - -	18692	7,551,854 – 7,551,913	-	8	74	71.27	-2.22	0.59	0.992409
13580	dm3.chrX	7,563,892 – 7,563,996	- - - intron="intron;ID=intron_FBgn0004198:9_FBgn0004198:11;Name=ct-in;Parent=FBtr0114613,FBtr0305134;parent_type=mRNA" - - - -	18693	7,563,892 – 7,563,996	+	6	108	81.53	-1.20	0.82	0.794877
13581	dm3.chrX	7,573,871 – 7,574,023	- - - - - - - -	18694	7,573,871 – 7,573,983	-	3	112	93.75	-1.33	0.95	0.748810
13581	dm3.chrX	7,573,871 – 7,574,023	- - - - - - - -	18695	7,573,911 – 7,574,023	+	4	120	81.03	-1.90	0.65	0.692232
13582	dm3.chrX	7,583,870 – 7,583,961	- - CDS="CDS;ID=CDS_FBgn0029504:5_950;Name=CHES-1-like-cds;Parent=FBtr0112946;parent_type=mRNA" - - - - -	18696	7,583,870 – 7,583,961	+	5	94	75.76	-1.32	0.71	0.826669
13583	dm3.chrX	7,585,778 – 7,585,860	- - - intron="intron;ID=intron_FBgn0029504:6_FBgn0029504:5;Name=CHES-1-like-in;Parent=FBtr0071079;parent_type=mRNA" - - - -	18697	7,585,778 – 7,585,860	+	7	93	61.29	-1.39	0.29	0.514566
13583	dm3.chrX	7,585,778 – 7,585,860		18698	7,585,778 – 7,585,860	-	7	93	61.29	-2.04	0.23	0.751898
13584	dm3.chrX	7,597,510 – 7,597,561	- - - - - - - -	18699	7,597,510 – 7,597,561	+	4	54	96.19	-1.88	0.95	0.925972
13585	dm3.chrX	7,604,863 – 7,604,965	- - - - - - - -	18700	7,604,863 – 7,604,965	+	5	108	62.17	-1.02	0.47	0.826337
13585	dm3.chrX	7,604,863 – 7,604,965	- - - - - - - -	18701	7,604,863 – 7,604,965	-	5	108	62.17	-1.44	0.51	0.978641
13586	dm3.chrX	7,608,967 – 7,609,037	- - - - - - - -	18702	7,608,967 – 7,609,037	-	5	71	82.24	-2.16	0.54	0.660503
13587	dm3.chrX	7,614,099 – 7,614,153	- - - - - - - -	18703	7,614,099 – 7,614,153	+	8	67	83.65	-1.30	0.78	0.559311
13587	dm3.chrX	7,614,099 – 7,614,153	- - - - - - - -	18704	7,614,099 – 7,614,153	-	8	67	83.65	-1.56	0.81	0.827818
13588	dm3.chrX	7,620,102 – 7,620,196	- - - - - - - -	18705	7,620,102 – 7,620,196	-	4	94	92.51	-1.95	0.78	0.534696
13589	dm3.chrX	7,645,901 – 7,645,993	- - - - - - - -	18706	7,645,901 – 7,645,993	+	4	92	92.03	-1.98	0.90	0.924916
13590	dm3.chrX	7,646,349 – 7,646,494	- - - - - - - -	18707	7,646,349 – 7,646,494	-	9	147	68.06	-0.85	0.53	0.899167
13591	dm3.chrX	7,646,811 – 7,646,906	- - - - - - - -	18708	7,646,811 – 7,646,906	+	6	114	60.89	-0.92	0.41	0.584877
13592	dm3.chrX	7,652,048 – 7,652,144	- - - - - - - -	18709	7,652,048 – 7,652,144	+	11	107	77.34	-1.54	0.75	0.949538
13593	dm3.chrX	7,653,366 – 7,653,417	- - - - - - - -	18710	7,653,366 – 7,653,417	-	7	51	92.72	-1.88	0.90	0.909466
13594	dm3.chrX	7,657,456 – 7,657,579	- - - - - - - -	18711	7,657,456 – 7,657,579	+	3	131	69.35	-3.03	0.23	0.513049
13595	dm3.chrX	7,657,767 – 7,657,837	- - - - - - - -	18712	7,657,767 – 7,657,837	+	5	71	92.06	-2.87	0.60	0.730124
13595	dm3.chrX	7,657,767 – 7,657,837	- - - - - - - -	18713	7,657,767 – 7,657,837	-	5	71	92.06	-1.95	0.88	0.897686
13596	dm3.chrX	7,683,511 – 7,683,581	- - - - - - - -	18714	7,683,511 – 7,683,581	+	5	74	77.09	-1.54	0.58	0.636724
13597	dm3.chrX	7,684,740 – 7,684,838	- - - - - - - -	18715	7,684,740 – 7,684,838	+	5	98	76.22	-1.77	0.54	0.779798
13597	dm3.chrX	7,684,740 – 7,684,838	- - - - - - - -	18716	7,684,740 – 7,684,838	-	5	98	76.22	-1.34	0.59	0.582838
13598	dm3.chrX	7,702,135 – 7,702,238	- - - - - - - -	18717	7,702,135 – 7,702,238	-	6	113	76.21	-1.40	0.57	0.620579
13599	dm3.chrX	7,722,948 – 7,723,068	- - - intron="intron;ID=intron_FBgn0029962:1_FBgn0029962:2;Name=CG1402-in;Parent=FBtr0300019;parent_type=mRNA" - - - -	18718	7,722,948 – 7,723,041	+	9	114	85.74	-2.22	0.75	0.940502
13599	dm3.chrX	7,722,948 – 7,723,068		18719	7,722,955 – 7,723,068	+	11	121	90.33	-1.86	0.75	0.616549
13600	dm3.chrX	7,723,235 – 7,723,302	- - - intron="intron;ID=intron_FBgn0029962:1_FBgn0029962:2;Name=CG1402-in;Parent=FBtr0300019;parent_type=mRNA" - - - -	18720	7,723,235 – 7,723,302	-	6	76	77.37	-1.38	0.60	0.622645
13601	dm3.chrX	7,726,728 – 7,726,831	- - - intron="intron;ID=intron_FBgn0029962:1_FBgn0029962:2;Name=CG1402-in;Parent=FBtr0300019;parent_type=mRNA" - - - -	18721	7,726,728 – 7,726,831	-	3	103	87.67	-2.08	0.89	0.946439
13602	dm3.chrX	7,727,943 – 7,727,994	- - - intron="intron;ID=intron_FBgn0029962:1_FBgn0029962:2;Name=CG1402-in;Parent=FBtr0300019;parent_type=mRNA" - - - -	18722	7,727,943 – 7,727,994	+	4	51	71.24	-1.16	0.67	0.793288
13603	dm3.chrX	7,728,271 – 7,728,431	- - - intron="intron;ID=intron_FBgn0029962:1_FBgn0029962:2;Name=CG1402-in;Parent=FBtr0300019;parent_type=mRNA" - - - -	18723	7,728,271 – 7,728,379	+	9	111	75.07	-0.90	0.76	0.896858
				18724	7,728,271 – 7,728,379	-	9	111	75.07	-1.06	0.88	0.957468
				18725	7,728,299 – 7,728,419	+	12	120	91.23	-1.53	0.86	0.715735
				18726	7,728,299 – 7,728,419	-	12	120	91.23	-1.38	0.84	0.510102
				18727	7,728,311 – 7,728,431	+	12	120	94.70	-2.28	0.77	0.752550
13604	dm3.chrX	7,735,541 – 7,735,671	- - - - - - - -	18728	7,735,541 – 7,735,671	+	5	132	81.09	-3.05	0.72	0.996193
13605	dm3.chrX	7,737,923 – 7,737,984	- - - - - - - -	18729	7,737,923 – 7,737,984	-	4	61	69.42	-1.77	0.59	0.961567
13606	dm3.chrX	7,738,762 – 7,738,842	- - - - - - - -	18730	7,738,762 – 7,738,842	-	12	83	85.87	-1.76	0.74	0.823307
13607	dm3.chrX	7,744,189 – 7,744,265	- - - - - - - -	18731	7,744,189 – 7,744,265	-	5	79	82.75	-2.43	0.66	0.944939
13608	dm3.chrX	7,749,412 – 7,749,493	- - - - - - - -	18732	7,749,412 – 7,749,493	+	9	88	74.63	-2.22	0.50	0.985357
13608	dm3.chrX	7,749,412 – 7,749,493	- - - - - - - -	18733	7,749,412 – 7,749,493	-	9	88	74.63	-2.02	0.56	0.987201
13609	dm3.chrX	7,749,793 – 7,749,895	- - - - - - - -	18734	7,749,793 – 7,749,895	+	8	110	57.20	-2.65	0.22	0.991750
13609	dm3.chrX	7,749,793 – 7,749,895	- - - - - - - -	18735	7,749,793 – 7,749,895	-	8	110	57.20	-2.19	0.13	0.680550
13610	dm3.chrX	7,793,628 – 7,793,745	- - - - - - - -	18736	7,793,628 – 7,793,745	+	6	125	80.26	-2.26	0.55	0.883272
13611	dm3.chrX	7,803,998 – 7,804,105	- - - intron="intron;ID=intron_CG1444:2_CG1444:3;Name=CG1444-in;Parent=FBtr0071091;parent_type=mRNA" - - - -	18737	7,803,998 – 7,804,105	-	3	109	56.00	-0.86	0.59	0.882190
13612	dm3.chrX	7,811,058 – 7,811,183	- - CDS="CDS;ID=CDS_CG1514:11_941;Name=snz-cds;Parent=FBtr0071092;parent_type=mRNA" - - - - -	18738	7,811,058 – 7,811,154	+	10	108	68.78	-1.40	0.50	0.926402
13612	dm3.chrX	7,811,058 – 7,811,183		18739	7,811,082 – 7,811,183	+	10	105	66.00	-1.44	0.44	0.953657
13613	dm3.chrX	7,815,858 – 7,816,006	- - - - - - - -	18740	7,815,858 – 7,816,006	+	6	159	73.47	-0.92	0.65	0.720708
13614	dm3.chrX	7,824,729 – 7,824,795	- - - intron="intron;ID=intron_CG10777:1_CG10777:2;Name=CG10777-in;Parent=FBtr0071132;parent_type=mRNA" - - - -	18741	7,824,729 – 7,824,795	-	3	66	85.86	-1.69	0.80	0.644664
13615	dm3.chrX	7,828,592 – 7,828,727	- - - - - - - -	18742	7,828,592 – 7,828,727	+	8	135	70.11	-2.49	0.45	0.995533
13616	dm3.chrX	7,860,303 – 7,860,354	- - - intron="intron;ID=intron_FBgn0003656:13_FBgn0003656:12;Name=sws-in;Parent=FBtr0071125,FBtr0301675;parent_type=mRNA" - - - -	18743	7,860,303 – 7,860,354	+	10	51	93.86	-1.68	0.89	0.809593
13617	dm3.chrX	7,862,120 – 7,862,213	- - - - - - - -	18744	7,862,120 – 7,862,213	+	4	98	64.43	-1.36	0.63	0.974852
13618	dm3.chrX	7,875,484 – 7,875,592	- - - intron="intron;ID=intron_FBgn0003447:6_FBgn0003447:7;Name=sn-in;Parent=FBtr0071101;parent_type=mRNA" - - - -	18745	7,875,484 – 7,875,592	+	5	119	80.67	-2.26	0.57	0.829479
13619	dm3.chrX	7,875,805 – 7,875,917	- - - intron="intron;ID=intron_FBgn0003447:6_FBgn0003447:7;Name=sn-in;Parent=FBtr0071101;parent_type=mRNA" - - - -	18746	7,875,805 – 7,875,917	-	7	127	61.77	-1.88	0.53	0.998257
13620	dm3.chrX	7,883,068 – 7,883,158	- - - - - - - -	18747	7,883,068 – 7,883,158	-	4	103	58.74	-1.77	0.34	0.798921
13621	dm3.chrX	7,885,996 – 7,886,053	- - - - - - - -	18748	7,885,996 – 7,886,053	-	3	58	94.22	-1.91	0.98	0.964592
13622	dm3.chrX	7,891,688 – 7,891,800	- - - intron="intron;ID=intron_CG1543:1_CG1543:10;Name=Tbh-in;Parent=FBtr0089999;parent_type=mRNA" - - - -	18749	7,891,688 – 7,891,800	+	5	114	78.04	-2.25	0.47	0.791950
13623	dm3.chrX	7,900,902 – 7,901,069	- - - intron="intron;ID=intron_CG1543:10_CG1543:4;Name=Tbh-in;Parent=FBtr0089999;parent_type=mRNA" - - - -	18750	7,900,902 – 7,901,069	+	6	167	84.95	-1.47	0.72	0.500000
13624	dm3.chrX	7,901,808 – 7,901,866	- - - intron="intron;ID=intron_CG1543:10_CG1543:4;Name=Tbh-in;Parent=FBtr0089999;parent_type=mRNA" - - - -	18751	7,901,808 – 7,901,866	+	5	62	80.20	-1.30	0.91	0.918756
13625	dm3.chrX	7,902,170 – 7,902,264	- - - intron="intron;ID=intron_CG1543:10_CG1543:4;Name=Tbh-in;Parent=FBtr0089999;parent_type=mRNA" - - - -	18752	7,902,170 – 7,902,264	-	9	120	76.53	-1.47	0.56	0.553421
13626	dm3.chrX	7,914,090 – 7,914,201	- - CDS="CDS;ID=CDS_FBgn0029989:1_949;Name=CG15333-cds;Parent=FBtr0071124;parent_type=mRNA" intron="intron;ID=intron_CG1543:10_CG1543:4;Name=Tbh-in;Parent=FBtr0089999;parent_type=mRNA" - - - -	18753	7,914,090 – 7,914,201	+	5	120	73.57	-1.62	0.59	0.869574
13627	dm3.chrX	7,914,317 – 7,914,375	- - CDS="CDS;ID=CDS_FBgn0029989:1_949;Name=CG15333-cds;Parent=FBtr0071124;parent_type=mRNA" intron="intron;ID=intron_CG1543:10_CG1543:4;Name=Tbh-in;Parent=FBtr0089999;parent_type=mRNA" - - - -	18754	7,914,317 – 7,914,375	+	8	62	62.95	-1.93	0.45	0.996454
13628	dm3.chrX	7,952,825 – 7,952,901	- - - - - - - -	18755	7,952,825 – 7,952,901	+	11	81	80.78	-2.10	0.65	0.972453
13629	dm3.chrX	7,956,448 – 7,956,560	- - - intron="intron;ID=intron_CG1560:1_CG1560:2;Name=mys-in;Parent=FBtr0071105;parent_type=mRNA" - - - -	18756	7,956,448 – 7,956,560	-	5	119	81.90	-1.75	0.72	0.813162
13630	dm3.chrX	7,956,700 – 7,956,767	- - - intron="intron;ID=intron_CG1560:1_CG1560:2;Name=mys-in;Parent=FBtr0071105;parent_type=mRNA" - - - -	18757	7,956,700 – 7,956,767	+	7	74	77.40	-1.63	0.52	0.609605
13631	dm3.chrX	7,969,483 – 7,969,623	- - - - - - - -	18758	7,969,483 – 7,969,586	+	4	104	70.63	-1.58	0.54	0.821645
13631	dm3.chrX	7,969,483 – 7,969,623	- - - - - - - -	18759	7,969,520 – 7,969,623	+	6	120	64.73	-2.03	0.33	0.872641
13632	dm3.chrX	7,969,798 – 7,969,908	- - - - - - - -	18760	7,969,798 – 7,969,908	-	5	116	60.12	-1.15	0.35	0.514083
13633	dm3.chrX	7,980,729 – 7,980,789	- - - intron="intron;ID=intron_FBgn0029995:5_FBgn0029995:4;Name=CG2256-in;Parent=FBtr0301736;parent_type=mRNA" - - - -	18761	7,980,729 – 7,980,789	-	5	61	65.55	-1.62	0.65	0.994808
13634	dm3.chrX	8,000,210 – 8,000,306	- - - - - - - -	18762	8,000,210 – 8,000,306	-	4	119	75.08	-1.29	0.87	0.893377
13635	dm3.chrX	8,001,055 – 8,001,201	- - - - - - - -	18763	8,001,055 – 8,001,201	+	3	149	86.04	-2.24	0.76	0.861798
13635	dm3.chrX	8,001,055 – 8,001,201	- - - - - - - -	18764	8,001,055 – 8,001,201	-	3	149	86.04	-3.63	0.63	0.989434
13636	dm3.chrX	8,014,993 – 8,015,110	- - - - - - - -	18765	8,014,993 – 8,015,110	+	12	119	55.80	-1.43	0.20	0.549339
13637	dm3.chrX	8,015,450 – 8,015,557	- - - - - - - -	18766	8,015,450 – 8,015,557	-	11	114	54.69	-2.29	0.44	0.999753
13638	dm3.chrX	8,044,152 – 8,044,221	- - CDS="CDS;ID=CDS_FBgn0030010:2_980;Name=CG10959-cds;Parent=FBtr0071157;parent_type=mRNA" - - - - -	18767	8,044,152 – 8,044,221	-	12	69	73.09	-0.78	0.53	0.712981
13639	dm3.chrX	8,055,497 – 8,055,594	- - - - - - - -	18768	8,055,497 – 8,055,594	+	3	97	93.10	-2.01	0.85	0.791600
13640	dm3.chrX	8,057,778 – 8,057,873	- - - - - - - -	18769	8,057,778 – 8,057,873	+	6	95	66.15	-0.90	0.45	0.636167
13640	dm3.chrX	8,057,778 – 8,057,873	- - - - - - - -	18770	8,057,778 – 8,057,873	-	6	95	66.15	-0.84	0.44	0.529077
13641	dm3.chrX	8,061,793 – 8,061,913	- - - - - - - -	18771	8,061,793 – 8,061,897	-	12	108	71.58	-1.06	0.50	0.811398
				18772	8,061,821 – 8,061,913	+	12	120	73.26	-1.80	0.51	0.936486
				18773	8,061,821 – 8,061,913	-	12	120	73.26	-1.00	0.54	0.521732
13642	dm3.chrX	8,069,883 – 8,069,988	- - CDS="CDS;ID=CDS_FBgn0030018:8_980;Name=slpr-cds;Parent=FBtr0071184;parent_type=mRNA" - - - - -	18774	8,069,883 – 8,069,988	+	10	105	70.32	-1.21	0.40	0.620996
13643	dm3.chrX	8,082,902 – 8,083,046	- - - intron="intron;ID=intron_FBgn0003349:2_FBgn0003349:3;Name=sdt-in;Parent=FBtr0100376;parent_type=mRNA" - - - -	18775	8,082,902 – 8,083,046	+	3	144	75.06	-2.35	0.50	0.684435
13643	dm3.chrX	8,082,902 – 8,083,046		18776	8,082,902 – 8,083,046	-	3	144	75.06	-2.13	0.65	0.890252
13644	dm3.chrX	8,087,627 – 8,087,734	- - - intron="intron;ID=intron_FBgn0003349:6_FBgn0003349:7;Name=sdt-in;Parent=FBtr0089978;parent_type=mRNA" - - - -	18777	8,087,627 – 8,087,734	-	6	110	71.48	-1.43	0.52	0.738609
13645	dm3.chrX	8,094,563 – 8,094,667	- - - intron="intron;ID=intron_FBgn0003349:6_FBgn0003349:7;Name=sdt-in;Parent=FBtr0089978;parent_type=mRNA" - - - -	18778	8,094,563 – 8,094,667	-	5	108	74.00	-1.54	0.56	0.773699
13646	dm3.chrX	8,095,036 – 8,095,125	- - - intron="intron;ID=intron_FBgn0003349:6_FBgn0003349:7;Name=sdt-in;Parent=FBtr0089978;parent_type=mRNA" - - - -	18779	8,095,036 – 8,095,125	-	5	101	61.74	-2.31	0.18	0.548230
13647	dm3.chrX	8,100,682 – 8,100,777	- - - intron="intron;ID=intron_FBgn0003349:7_FBgn0003349:8;Name=sdt-in;Parent=FBtr0100376;parent_type=mRNA" - - - -	18780	8,100,682 – 8,100,777	-	5	102	86.62	-1.49	0.90	0.876373
13648	dm3.chrX	8,101,928 – 8,102,033	- - - intron="intron;ID=intron_FBgn0003349:7_FBgn0003349:8;Name=sdt-in;Parent=FBtr0100376;parent_type=mRNA" - - - -	18781	8,101,928 – 8,102,033	+	6	107	61.32	-1.85	0.41	0.988765
13648	dm3.chrX	8,101,928 – 8,102,033		18782	8,101,928 – 8,102,033	-	6	107	61.32	-1.17	0.37	0.729589
13649	dm3.chrX	8,108,619 – 8,108,710	- - - intron="intron;ID=intron_FBgn0003349:9_FBgn0003349:13;Name=sdt-in;Parent=FBtr0089978,FBtr0100376,FBtr0100375;parent_type=mRNA" - - - -	18783	8,108,619 – 8,108,710	+	4	105	75.88	-2.30	0.50	0.823446
13650	dm3.chrX	8,109,160 – 8,109,274	- - - intron="intron;ID=intron_FBgn0003349:9_FBgn0003349:13;Name=sdt-in;Parent=FBtr0089978,FBtr0100376,FBtr0100375;parent_type=mRNA" - - - -	18784	8,109,160 – 8,109,272	+	7	117	64.16	-1.16	0.39	0.766850
				18785	8,109,160 – 8,109,272	-	7	117	64.16	-1.52	0.39	0.931595
				18786	8,109,168 – 8,109,274	+	7	117	62.68	-0.92	0.44	0.763473
13651	dm3.chrX	8,112,349 – 8,112,461	- - - intron="intron;ID=intron_FBgn0003349:12_FBgn0003349:13;Name=sdt-in;Parent=FBtr0089977,FBtr0089974;parent_type=mRNA" - - - -	18787	8,112,349 – 8,112,461	-	6	118	64.90	-0.98	0.46	0.758379
13652	dm3.chrX	8,112,695 – 8,112,766	- - - intron="intron;ID=intron_FBgn0003349:12_FBgn0003349:13;Name=sdt-in;Parent=FBtr0089977,FBtr0089974;parent_type=mRNA" - - - -	18788	8,112,695 – 8,112,766	+	8	79	78.38	-3.13	0.42	0.982240
13653	dm3.chrX	8,113,309 – 8,113,387	- - - intron="intron;ID=intron_FBgn0003349:12_FBgn0003349:13;Name=sdt-in;Parent=FBtr0089977,FBtr0089974;parent_type=mRNA" - - - -	18789	8,113,309 – 8,113,387	+	7	78	73.43	-2.12	0.41	0.936881
13653	dm3.chrX	8,113,309 – 8,113,387		18790	8,113,309 – 8,113,387	-	7	78	73.43	-1.76	0.39	0.712786
13654	dm3.chrX	8,114,542 – 8,114,636	- - - intron="intron;ID=intron_FBgn0003349:12_FBgn0003349:13;Name=sdt-in;Parent=FBtr0089977,FBtr0089974;parent_type=mRNA" - - - -	18791	8,114,542 – 8,114,636	+	6	103	85.69	-1.74	0.79	0.835723
13654	dm3.chrX	8,114,542 – 8,114,636		18792	8,114,542 – 8,114,636	-	6	103	85.69	-2.71	0.79	0.989553
13655	dm3.chrX	8,123,444 – 8,123,614	- - - intron="intron;ID=intron_FBgn0003349:16_FBgn0003349:19;Name=sdt-in;Parent=FBtr0089978,FBtr0100376,FBtr0089977,FBtr0111034,FBtr0100375,FBtr0089974;parent_type=mRNA" - - - -	18793	8,123,444 – 8,123,614	-	3	170	76.82	-1.52	0.68	0.576672
13656	dm3.chrX	8,135,252 – 8,135,344	- - CDS="CDS;ID=CDS_CG2147:2_933;Name=CG2147-cds;Parent=FBtr0071166;parent_type=mRNA" - - - - -	18794	8,135,252 – 8,135,344	-	6	112	73.46	-1.84	0.57	0.922849
13657	dm3.chrX	8,138,388 – 8,138,525	- - CDS="CDS;ID=CDS_CG2151:6_934;Name=Trxr-1-cds;Parent=FBtr0071169;parent_type=mRNA" intron="intron;ID=intron_CG2151:5_CG2151:2;Name=Trxr-1-in;Parent=FBtr0071168;parent_type=mRNA" - - - -	18795	8,138,388 – 8,138,525	-	5	138	95.21	-1.74	0.89	0.753774
13658	dm3.chrX	8,139,861 – 8,139,981	- - - intron="intron;ID=intron_CG2151:6_CG2151:2;Name=Trxr-1-in;Parent=FBtr0071169;parent_type=mRNA" - - - -	18796	8,139,861 – 8,139,981	+	4	120	84.58	-2.32	0.66	0.850280
13659	dm3.chrX	8,167,901 – 8,167,952	- - - intron="intron;ID=intron_FBgn0030030:1_FBgn0030030:2;Name=CG1636-in;Parent=FBtr0071171;parent_type=mRNA" - - - -	18797	8,167,901 – 8,167,952	+	6	51	73.33	-0.60	0.70	0.662746
13660	dm3.chrX	8,168,084 – 8,168,142	- - - intron="intron;ID=intron_FBgn0030030:1_FBgn0030030:2;Name=CG1636-in;Parent=FBtr0071171;parent_type=mRNA" - - - -	18798	8,168,084 – 8,168,142	+	6	76	59.39	-2.18	0.61	0.999231
13660	dm3.chrX	8,168,084 – 8,168,142		18799	8,168,084 – 8,168,142	-	6	76	59.39	-1.15	0.61	0.981408
13661	dm3.chrX	8,189,458 – 8,189,600	- - - intron="intron;ID=intron_FBgn0015519:7_FBgn0015519:6;Name=nAcRalpha-7E-in;Parent=FBtr0289988;parent_type=mRNA" - - - -	18800	8,189,458 – 8,189,600	+	4	143	61.42	-1.25	0.53	0.832256
13661	dm3.chrX	8,189,458 – 8,189,600		18801	8,189,458 – 8,189,600	-	4	143	61.42	-1.72	0.56	0.976835
13662	dm3.chrX	8,192,596 – 8,192,650	- - - intron="intron;ID=intron_FBgn0015519:7_FBgn0015519:6;Name=nAcRalpha-7E-in;Parent=FBtr0289988;parent_type=mRNA" - - - -	18802	8,192,596 – 8,192,650	+	4	54	71.21	-1.41	0.74	0.944737
13663	dm3.chrX	8,218,766 – 8,218,863	- - CDS="CDS;ID=CDS_FBgn0030032:1_1001;Name=CG15344-cds;Parent=FBtr0302876;parent_type=mRNA" intron="intron;ID=intron_FBgn0015519:10_FBgn0015519:9;Name=nAcRalpha-7E-in;Parent=FBtr0289988;parent_type=mRNA" - - - -	18803	8,218,766 – 8,218,863	+	4	97	66.31	-1.09	0.54	0.640969
13664	dm3.chrX	8,227,163 – 8,227,271	- - - - - - - -	18804	8,227,163 – 8,227,271	-	7	120	77.14	-1.77	0.50	0.500000
13665	dm3.chrX	8,229,164 – 8,229,220	- - - - - - - -	18805	8,229,164 – 8,229,220	+	6	56	92.13	-1.01	0.96	0.677704
13666	dm3.chrX	8,234,903 – 8,234,955	- - - - - - - -	18806	8,234,903 – 8,234,955	+	5	52	81.89	-1.88	0.71	0.839193
13667	dm3.chrX	8,245,076 – 8,245,187	- - - - - - - -	18807	8,245,076 – 8,245,187	+	5	112	84.38	-1.78	0.67	0.577097
13668	dm3.chrX	8,247,421 – 8,247,492	- - - - - - - -	18808	8,247,421 – 8,247,492	+	4	75	70.70	-0.79	0.71	0.543704
13669	dm3.chrX	8,250,191 – 8,250,285	- - - - - - - -	18809	8,250,191 – 8,250,285	-	11	116	68.99	-0.94	0.48	0.702657
13670	dm3.chrX	8,263,661 – 8,263,727	- - - - - - - -	18810	8,263,661 – 8,263,727	-	3	66	74.49	-1.93	0.54	0.556247
13671	dm3.chrX	8,266,346 – 8,266,439	- - - - - - - -	18811	8,266,346 – 8,266,439	+	4	93	66.11	-2.06	0.45	0.943587
13671	dm3.chrX	8,266,346 – 8,266,439	- - - - - - - -	18812	8,266,346 – 8,266,439	-	4	93	66.11	-1.34	0.47	0.611757
13672	dm3.chrX	8,271,357 – 8,271,449	- - - - - - - -	18813	8,271,357 – 8,271,449	+	5	92	80.75	-2.35	0.60	0.911616
13673	dm3.chrX	8,279,358 – 8,279,437	- - - - - - - -	18814	8,279,358 – 8,279,437	-	4	79	83.33	-1.58	0.76	0.634255
13674	dm3.chrX	8,286,543 – 8,286,643	- - - - - - - -	18815	8,286,543 – 8,286,643	-	7	109	68.15	-1.24	0.41	0.564418
13675	dm3.chrX	8,293,393 – 8,293,446	- - - - - - - -	18816	8,293,393 – 8,293,446	+	12	53	96.51	-3.22	0.89	0.992665
13676	dm3.chrX	8,305,393 – 8,305,605	- - - intron="intron;ID=intron_FBgn0026758:2_FBgn0026758:3;Name=Trf2-in;Parent=FBtr0112927;parent_type=mRNA" - - - -	18817	8,305,393 – 8,305,510	+	5	120	75.69	-2.74	0.49	0.979058
				18818	8,305,393 – 8,305,510	-	5	120	75.69	-3.09	0.56	0.996926
				18819	8,305,470 – 8,305,570	+	4	120	85.76	-2.24	0.62	0.523730
				18820	8,305,470 – 8,305,570	-	4	120	85.76	-3.86	0.75	0.997994
				18821	8,305,510 – 8,305,605	-	5	119	78.60	-2.02	0.52	0.532375
13677	dm3.chrX	8,307,643 – 8,307,744	- - - intron="intron;ID=intron_FBgn0026758:2_FBgn0026758:3;Name=Trf2-in;Parent=FBtr0112927;parent_type=mRNA" - - - -	18822	8,307,643 – 8,307,744	+	5	106	86.72	-1.59	0.77	0.524585
13678	dm3.chrX	8,312,728 – 8,312,830	- - - intron="intron;ID=intron_FBgn0026758:3_FBgn0026758:4;Name=Trf2-in;Parent=FBtr0112927;parent_type=mRNA" - - - -	18823	8,312,728 – 8,312,830	+	6	118	69.38	-1.56	0.46	0.771321
13679	dm3.chrX	8,315,810 – 8,315,929	- - - intron="intron;ID=intron_FBgn0026758:3_FBgn0026758:4;Name=Trf2-in;Parent=FBtr0112927;parent_type=mRNA" - - - -	18824	8,315,810 – 8,315,929	+	5	120	75.74	-1.24	0.59	0.532842
13679	dm3.chrX	8,315,810 – 8,315,929		18825	8,315,810 – 8,315,929	-	5	120	75.74	-1.54	0.66	0.898035
13680	dm3.chrX	8,355,599 – 8,355,651	- - CDS="CDS;ID=CDS_FBgn0023506:1_1002;Name=Es2-cds;Parent=FBtr0071198;parent_type=mRNA" - - - - -	18826	8,355,599 – 8,355,651	+	6	52	64.06	-1.09	0.60	0.982065
13681	dm3.chrX	8,376,948 – 8,377,044	- - CDS="CDS;ID=CDS_FBgn0000360:3_964;Name=Cp38-cds;Parent=FBtr0300448;parent_type=mRNA" - - - - -	18827	8,376,948 – 8,377,044	+	12	120	70.67	-1.67	0.40	0.612913
13682	dm3.chrX	8,379,002 – 8,379,064	- - - - - - - -	18828	8,379,002 – 8,379,064	+	5	62	89.19	-1.52	0.87	0.754601
13683	dm3.chrX	8,383,567 – 8,383,619	- - - - - - - -	18829	8,383,567 – 8,383,619	-	6	52	75.64	-0.93	0.70	0.648310
13684	dm3.chrX	8,386,735 – 8,386,836	- - - intron="intron;ID=intron_FBgn0053181:2_FBgn0053181:5;Name=CG33181-in;Parent=FBtr0113451;parent_type=mRNA" - - - -	18830	8,386,735 – 8,386,836	+	5	115	87.38	-1.65	0.79	0.598354
13685	dm3.chrX	8,391,318 – 8,391,412	- - - intron="intron;ID=intron_FBgn0053181:2_FBgn0053181:5;Name=CG33181-in;Parent=FBtr0113451;parent_type=mRNA" - - - -	18831	8,391,318 – 8,391,412	+	5	105	81.71	-1.37	0.74	0.562972
13686	dm3.chrX	8,392,036 – 8,392,140	- - - intron="intron;ID=intron_FBgn0053181:2_FBgn0053181:5;Name=CG33181-in;Parent=FBtr0113451;parent_type=mRNA" - - - -	18832	8,392,036 – 8,392,140	+	5	112	86.39	-2.07	0.72	0.766694
13687	dm3.chrX	8,395,743 – 8,395,850	- - - intron="intron;ID=intron_FBgn0053181:2_FBgn0053181:5;Name=CG33181-in;Parent=FBtr0113451;parent_type=mRNA" - - - -	18833	8,395,743 – 8,395,850	+	4	133	62.42	-2.37	0.39	0.971986
13688	dm3.chrX	8,401,025 – 8,401,124	- - - intron="intron;ID=intron_FBgn0053181:3_FBgn0053181:5;Name=CG33181-in;Parent=FBtr0113455;parent_type=mRNA" - - - -	18834	8,401,025 – 8,401,124	+	5	110	77.95	-2.61	0.60	0.984305
13688	dm3.chrX	8,401,025 – 8,401,124		18835	8,401,025 – 8,401,124	-	5	110	77.95	-1.95	0.56	0.788327
13689	dm3.chrX	8,402,653 – 8,402,746	- - - intron="intron;ID=intron_FBgn0053181:3_FBgn0053181:5;Name=CG33181-in;Parent=FBtr0113455;parent_type=mRNA" - - - -	18836	8,402,653 – 8,402,746	+	5	93	96.77	-1.40	0.92	0.593527
13690	dm3.chrX	8,405,817 – 8,405,919	- - - intron="intron;ID=intron_FBgn0053181:8_FBgn0053181:9;Name=CG33181-in;Parent=FBtr0113453;parent_type=mRNA" - - - -	18837	8,405,817 – 8,405,919	+	5	102	87.87	-1.52	0.87	0.793944
13691	dm3.chrX	8,411,212 – 8,411,359	- - - - - - - -	18838	8,411,212 – 8,411,359	+	5	148	62.65	-1.40	0.43	0.856554
13691	dm3.chrX	8,411,212 – 8,411,359	- - - - - - - -	18839	8,411,212 – 8,411,359	-	5	148	62.65	-2.23	0.43	0.992016
13692	dm3.chrX	8,413,581 – 8,413,713	- - - intron="intron;ID=intron_FBgn0002968:4_FBgn0002968:5;Name=Nrg-in;Parent=FBtr0301762;parent_type=mRNA" - - - -	18840	8,413,581 – 8,413,713	-	4	155	77.24	-1.66	0.65	0.664094
13693	dm3.chrX	8,427,018 – 8,427,119	- - - intron="intron;ID=intron_FBgn0002968:6_FBgn0002968:7;Name=Nrg-in;Parent=FBtr0071207,FBtr0071208,FBtr0071209,FBtr0301762,FBtr0301763,FBtr0301764,FBtr0305914;parent_type=mRNA" - - - -	18841	8,427,018 – 8,427,119	-	4	102	87.71	-1.37	0.86	0.617865
13694	dm3.chrX	8,430,985 – 8,431,036	- - - intron="intron;ID=intron_FBgn0002968:6_FBgn0002968:7;Name=Nrg-in;Parent=FBtr0071207,FBtr0071208,FBtr0071209,FBtr0301762,FBtr0301763,FBtr0301764,FBtr0305914;parent_type=mRNA" - - - -	18842	8,430,985 – 8,431,036	+	4	54	77.46	-0.80	0.93	0.768768
13695	dm3.chrX	8,452,980 – 8,453,124	- - - - - - - -	18843	8,452,980 – 8,453,085	-	4	120	67.86	-2.27	0.41	0.894803
13695	dm3.chrX	8,452,980 – 8,453,124	- - - - - - - -	18844	8,453,020 – 8,453,124	+	4	120	73.34	-1.46	0.60	0.680825
13696	dm3.chrX	8,466,867 – 8,466,921	- - CDS="CDS;ID=CDS_FBgn0030051:5_969;Name=spirit-cds;Parent=FBtr0071231;parent_type=mRNA" - - - - -	18845	8,466,867 – 8,466,921	-	6	65	68.09	-1.75	0.91	0.992919
13697	dm3.chrX	8,470,880 – 8,470,971	- - - intron="intron;ID=intron_FBgn0030052:4_FBgn0030052:5;Name=CG12065-in;Parent=FBtr0300750;parent_type=mRNA" - - - -	18846	8,470,880 – 8,470,971	+	5	106	56.09	-1.45	0.31	0.694976
13698	dm3.chrX	8,484,977 – 8,485,093	- - - - - - - -	18847	8,484,977 – 8,485,093	+	5	116	90.69	-2.14	0.84	0.916012
13698	dm3.chrX	8,484,977 – 8,485,093	- - - - - - - -	18848	8,484,977 – 8,485,093	-	5	116	90.69	-1.93	0.77	0.635873
13699	dm3.chrX	8,486,177 – 8,486,290	- - - intron="intron;ID=intron_CG12659:1_CG12659:2;Name=CG12659-in;Parent=FBtr0071229;parent_type=mRNA" - - - -	18849	8,486,177 – 8,486,290	+	6	113	80.71	-1.43	0.74	0.813806
13700	dm3.chrX	8,543,939 – 8,544,033	- - - intron="intron;ID=intron_FBgn0004102:4_FBgn0004102:3;Name=oc-in;Parent=FBtr0300106;parent_type=mRNA" - - - -	18850	8,543,939 – 8,544,033	-	5	94	91.59	-1.81	0.80	0.588979
13701	dm3.chrX	8,550,187 – 8,550,249	- - - - - - - -	18851	8,550,187 – 8,550,249	+	5	62	93.75	-2.03	0.78	0.573651
13702	dm3.chrX	8,550,331 – 8,550,461	- - - - - - - -	18852	8,550,331 – 8,550,461	+	10	142	73.31	-2.00	0.33	0.533285
13702	dm3.chrX	8,550,331 – 8,550,461	- - - - - - - -	18853	8,550,331 – 8,550,461	-	10	142	73.31	-1.67	0.41	0.636608
13703	dm3.chrX	8,558,411 – 8,558,476	- - - - - - - -	18854	8,558,411 – 8,558,476	-	8	68	66.54	-1.54	0.47	0.957440
13704	dm3.chrX	8,560,791 – 8,560,853	- - - - - - - -	18855	8,560,791 – 8,560,853	+	6	75	68.37	-2.39	0.32	0.834236
13705	dm3.chrX	8,561,173 – 8,561,270	- - - - - - - -	18856	8,561,173 – 8,561,268	+	4	95	69.57	-1.31	0.54	0.692754
13705	dm3.chrX	8,561,173 – 8,561,270	- - - - - - - -	18857	8,561,175 – 8,561,270	+	4	95	70.46	-1.29	0.55	0.641002
13706	dm3.chrX	8,563,422 – 8,563,567	- - - - - - - -	18858	8,563,422 – 8,563,521	+	5	118	69.79	-2.66	0.59	0.998058
				18859	8,563,422 – 8,563,521	-	5	118	69.79	-1.48	0.56	0.883708
				18860	8,563,453 – 8,563,558	+	11	119	71.67	-2.17	0.51	0.993359
				18861	8,563,459 – 8,563,567	+	7	108	81.36	-1.92	0.68	0.939395
13707	dm3.chrX	8,569,698 – 8,569,800	- - - - - - - -	18862	8,569,698 – 8,569,800	+	6	108	75.49	-1.37	0.52	0.500000
13708	dm3.chrX	8,578,790 – 8,578,842	- - - intron="intron;ID=intron_CG11284:1_CG11284:2;Name=CG11284-in;Parent=FBtr0071222;parent_type=mRNA" - - - -	18863	8,578,790 – 8,578,842	+	6	70	66.17	-1.13	0.55	0.751105
13709	dm3.chrX	8,599,515 – 8,599,614	- - - - - - - -	18864	8,599,515 – 8,599,614	+	9	104	76.11	-1.84	0.42	0.702535
13710	dm3.chrX	8,615,709 – 8,615,853	- - - - - - - -	18865	8,615,709 – 8,615,815	-	5	120	62.04	-1.14	0.48	0.865425
13710	dm3.chrX	8,615,709 – 8,615,853	- - - - - - - -	18866	8,615,735 – 8,615,853	-	5	118	81.04	-1.69	0.61	0.527613
13711	dm3.chrX	8,622,992 – 8,623,103	- - - - - - - -	18867	8,622,992 – 8,623,103	+	7	120	78.67	-1.98	0.53	0.721666
13712	dm3.chrX	8,624,132 – 8,624,207	- - - - - - - -	18868	8,624,132 – 8,624,207	-	3	75	86.16	-1.44	0.85	0.629676
13713	dm3.chrX	8,633,560 – 8,633,613	- - - - - - - -	18869	8,633,560 – 8,633,613	-	8	62	68.01	-1.58	0.59	0.990476
13714	dm3.chrX	8,637,230 – 8,637,320	- - - - - - - -	18870	8,637,230 – 8,637,320	+	11	116	71.69	-1.48	0.42	0.635531
13715	dm3.chrX	8,641,970 – 8,642,085	- - - - - - - -	18871	8,641,970 – 8,642,085	+	9	117	67.68	-1.62	0.43	0.974867
13716	dm3.chrX	8,647,778 – 8,647,876	- - - - - - - -	18872	8,647,778 – 8,647,876	-	11	114	64.51	-1.60	0.28	0.526925
13717	dm3.chrX	8,663,634 – 8,663,698	- - - intron="intron;ID=intron_CG11354:3_CG11354:4;Name=Lim1-in;Parent=FBtr0071279;parent_type=mRNA" - - - -	18873	8,663,634 – 8,663,698	-	12	66	90.57	-1.64	0.85	0.777604
13718	dm3.chrX	8,666,420 – 8,666,479	- - - intron="intron;ID=intron_CG11354:3_CG11354:4;Name=Lim1-in;Parent=FBtr0071279;parent_type=mRNA" - - - -	18874	8,666,420 – 8,666,479	+	11	59	95.59	-0.93	0.97	0.584280
13719	dm3.chrX	8,666,739 – 8,666,835	- - - intron="intron;ID=intron_CG11354:3_CG11354:4;Name=Lim1-in;Parent=FBtr0071279;parent_type=mRNA" - - - -	18875	8,666,739 – 8,666,835	+	8	100	67.51	-0.68	0.50	0.649530
13720	dm3.chrX	8,676,108 – 8,676,163	- - - intron="intron;ID=intron_CG11354:3_CG11354:4;Name=Lim1-in;Parent=FBtr0071279;parent_type=mRNA" - - - -	18876	8,676,108 – 8,676,163	-	7	65	78.61	-1.52	0.78	0.929745
13721	dm3.chrX	8,680,076 – 8,680,152	- - - intron="intron;ID=intron_CG11354:3_CG11354:4;Name=Lim1-in;Parent=FBtr0071279;parent_type=mRNA" - - - -	18877	8,680,076 – 8,680,152	+	9	77	76.67	-1.63	0.70	0.975291
13722	dm3.chrX	8,685,794 – 8,685,895	- - - intron="intron;ID=intron_CG11354:1_CG11354:2;Name=Lim1-in;Parent=FBtr0071279;parent_type=mRNA" - - - -	18878	8,685,794 – 8,685,895	+	10	107	71.39	-1.37	0.43	0.733836
13723	dm3.chrX	8,697,392 – 8,697,484	- - - intron="intron;ID=intron_CG11354:1_CG11354:2;Name=Lim1-in;Parent=FBtr0071279;parent_type=mRNA" - - - -	18879	8,697,392 – 8,697,484	+	6	99	74.45	-2.05	0.40	0.601402
13724	dm3.chrX	8,698,058 – 8,698,108	- - - intron="intron;ID=intron_CG11354:1_CG11354:2;Name=Lim1-in;Parent=FBtr0071279;parent_type=mRNA" - - - -	18880	8,698,058 – 8,698,108	+	4	59	79.10	-1.45	0.72	0.719622
13724	dm3.chrX	8,698,058 – 8,698,108		18881	8,698,058 – 8,698,108	-	4	59	79.10	-2.19	0.84	0.987933
13725	dm3.chrX	8,703,833 – 8,703,911	- - - - - - - -	18882	8,703,833 – 8,703,911	+	3	78	82.40	-2.11	0.73	0.862774
13726	dm3.chrX	8,705,854 – 8,705,992	- - - - - - - -	18883	8,705,854 – 8,705,952	-	8	104	80.92	-2.57	0.46	0.776625
				18884	8,705,887 – 8,705,992	+	5	105	95.81	-1.86	0.94	0.914157
				18885	8,705,887 – 8,705,992	-	5	105	95.81	-2.20	0.79	0.636970
13727	dm3.chrX	8,710,723 – 8,710,783	- - - - - - - -	18886	8,710,723 – 8,710,783	+	9	67	74.73	-2.48	0.61	0.996196
13728	dm3.chrX	8,725,123 – 8,725,226	- - - - - - - -	18887	8,725,123 – 8,725,226	+	4	104	58.54	-0.93	0.45	0.577418
13728	dm3.chrX	8,725,123 – 8,725,226	- - - - - - - -	18888	8,725,123 – 8,725,226	-	4	104	58.54	-0.83	0.51	0.741375
13729	dm3.chrX	8,725,351 – 8,725,446	- - - - - - - -	18889	8,725,351 – 8,725,446	-	9	114	73.84	-2.17	0.36	0.635506
13730	dm3.chrX	8,727,109 – 8,727,165	- - - - - - - -	18890	8,727,109 – 8,727,165	+	8	58	63.54	-0.82	0.38	0.534380
13731	dm3.chrX	8,735,928 – 8,735,987	- - - - - - - -	18891	8,735,928 – 8,735,987	+	12	65	72.69	-1.85	0.49	0.940696
13732	dm3.chrX	8,762,647 – 8,762,751	- - - intron="intron;ID=intron_CG12075:3_CG12075:4;Name=CG12075-in;Parent=FBtr0071253,FBtr0071254;parent_type=mRNA" - - - -	18892	8,762,647 – 8,762,751	-	5	104	97.67	-1.14	0.98	0.691674
13733	dm3.chrX	8,768,457 – 8,768,538	- - - intron="intron;ID=intron_CG10701:11_CG10701:6;Name=Moe-in;Parent=FBtr0071271,FBtr0071272,FBtr0071278,FBtr0071270;parent_type=mRNA" - - - -	18893	8,768,457 – 8,768,538	+	6	81	69.49	-1.09	0.45	0.569798
13734	dm3.chrX	8,770,723 – 8,770,818	- - - - - - - -	18894	8,770,723 – 8,770,818	+	12	95	79.92	-1.28	0.66	0.698848
13735	dm3.chrX	8,773,296 – 8,773,369	- - - - - - - -	18895	8,773,296 – 8,773,369	+	10	76	75.41	-1.76	0.56	0.955194
13736	dm3.chrX	8,780,254 – 8,780,381	- - - intron="intron;ID=intron_CG10701:1_CG10701:2;Name=Moe-in;Parent=FBtr0071278,FBtr0071269;parent_type=mRNA" - - - -	18896	8,780,254 – 8,780,351	-	5	97	85.67	-2.18	0.78	0.938417
13736	dm3.chrX	8,780,254 – 8,780,381		18897	8,780,278 – 8,780,381	-	6	107	77.25	-1.29	0.63	0.655122
13737	dm3.chrX	8,784,268 – 8,784,363	- - - intron="intron;ID=intron_CG10701:1_CG10701:2;Name=Moe-in;Parent=FBtr0071278,FBtr0071269;parent_type=mRNA" - - - -	18898	8,784,268 – 8,784,363	+	4	104	73.36	-1.46	0.62	0.743226
13738	dm3.chrX	8,790,870 – 8,791,026	- - - - - - - -	18899	8,790,870 – 8,790,979	-	6	117	77.59	-1.80	0.62	0.886767
				18900	8,790,907 – 8,791,019	-	6	120	81.08	-2.03	0.57	0.759063
				18901	8,790,914 – 8,791,026	-	6	120	79.39	-1.83	0.55	0.656042
13739	dm3.chrX	8,800,972 – 8,801,070	- - - - - - - -	18902	8,800,972 – 8,801,070	-	9	108	56.43	-1.89	0.16	0.515950
13740	dm3.chrX	8,805,905 – 8,806,008	- - - intron="intron;ID=intron_FBgn0261549:2_FBgn0261549:4;Name=rdgA-in;Parent=FBtr0302663,FBtr0302664;parent_type=mRNA" - - - -	18903	8,805,905 – 8,806,008	+	5	120	63.45	-0.61	0.59	0.818340
13741	dm3.chrX	8,826,310 – 8,826,402	- - - intron="intron;ID=intron_FBgn0261549:5_FBgn0261549:6;Name=rdgA-in;Parent=FBtr0302660,FBtr0302665;parent_type=mRNA" - - - -	18904	8,826,310 – 8,826,402	+	5	94	94.21	-2.02	0.84	0.771773
13742	dm3.chrX	8,831,824 – 8,831,883	- - - intron="intron;ID=intron_FBgn0261549:5_FBgn0261549:6;Name=rdgA-in;Parent=FBtr0302660,FBtr0302665;parent_type=mRNA" - - - -	18905	8,831,824 – 8,831,883	+	6	61	83.72	-1.45	0.76	0.632974
13743	dm3.chrX	8,836,839 – 8,836,941	- - - intron="intron;ID=intron_FBgn0261549:5_FBgn0261549:6;Name=rdgA-in;Parent=FBtr0302660,FBtr0302665;parent_type=mRNA" - - - -	18906	8,836,839 – 8,836,941	+	7	103	72.29	-1.47	0.43	0.611728
13744	dm3.chrX	8,854,219 – 8,854,343	- - - intron="intron;ID=intron_FBgn0261549:5_FBgn0261549:6;Name=rdgA-in;Parent=FBtr0302660,FBtr0302665;parent_type=mRNA" - - - -	18907	8,854,219 – 8,854,343	-	4	124	94.26	-1.29	0.91	0.528054
13745	dm3.chrX	8,873,066 – 8,873,164	- - - - - - - -	18908	8,873,066 – 8,873,164	+	4	99	70.34	-1.49	0.60	0.804922
13745	dm3.chrX	8,873,066 – 8,873,164	- - - - - - - -	18909	8,873,066 – 8,873,164	-	4	99	70.34	-2.13	0.65	0.985318
13746	dm3.chrX	8,875,206 – 8,875,300	- - - intron="intron;ID=intron_CG10962:2_CG10962:3;Name=CG10962-in;Parent=FBtr0071262;parent_type=mRNA" - - - -	18910	8,875,206 – 8,875,300	-	5	111	58.53	-1.47	0.40	0.911378
13747	dm3.chrX	8,876,268 – 8,876,370	- - - intron="intron;ID=intron_CG10962:2_CG10962:3;Name=CG10962-in;Parent=FBtr0071262;parent_type=mRNA" - - - -	18911	8,876,268 – 8,876,370	+	12	122	78.96	-1.61	0.63	0.852620
13747	dm3.chrX	8,876,268 – 8,876,370		18912	8,876,268 – 8,876,370	-	12	122	78.96	-2.14	0.65	0.978169
13748	dm3.chrX	8,880,114 – 8,880,231	- - - intron="intron;ID=intron_CG10962:2_CG10962:3;Name=CG10962-in;Parent=FBtr0071262;parent_type=mRNA" - - - -	18913	8,880,114 – 8,880,231	+	6	118	75.51	-1.64	0.55	0.864937
13748	dm3.chrX	8,880,114 – 8,880,231		18914	8,880,114 – 8,880,231	-	6	118	75.51	-1.34	0.60	0.805784
13749	dm3.chrX	8,886,288 – 8,886,406	- - - intron="intron;ID=intron_CG10962:2_CG10962:3;Name=CG10962-in;Parent=FBtr0071262;parent_type=mRNA" - - - -	18915	8,886,288 – 8,886,406	+	3	118	75.38	-0.91	0.94	0.784658
13750	dm3.chrX	8,886,920 – 8,887,001	- - - intron="intron;ID=intron_CG10962:2_CG10962:3;Name=CG10962-in;Parent=FBtr0071262;parent_type=mRNA" - - - -	18916	8,886,920 – 8,887,001	+	6	95	57.03	-1.83	0.23	0.548930
13751	dm3.chrX	8,887,353 – 8,887,451	FBnoncoding="pre_miRNA;ID=FBtr0304178;Name=mir-31b-RM;Parent=FBgn0262369;Alias=CR42882-RM;Dbxref=FlyBase_Annotation_IDs:CR42882-RM,miRBase:MI0000410" - - intron="intron;ID=intron_CG10962:2_CG10962:3;Name=CG10962-in;Parent=FBtr0071262;parent_type=mRNA" "Rfam_10.0=RF00661;mir-31;AAPQ01005997.1/12172-12293\|4.8e-40" - - "mirBase_v16=dme-mir-31b\|2.6e-51"	18917	8,887,353 – 8,887,451	-	10	112	74.75	-1.30	0.52	0.538010
13752	dm3.chrX	8,899,138 – 8,899,218	- - - intron="intron;ID=intron_FBgn0261549:7_FBgn0261549:9;Name=rdgA-in;Parent=FBtr0302665;parent_type=mRNA" - - - -	18918	8,899,138 – 8,899,218	+	6	80	89.42	-1.86	0.72	0.524754
13753	dm3.chrX	8,903,729 – 8,903,793	- - - intron="intron;ID=intron_FBgn0261549:7_FBgn0261549:9;Name=rdgA-in;Parent=FBtr0302665;parent_type=mRNA" - - - -	18919	8,903,729 – 8,903,793	+	3	66	91.92	-1.72	0.84	0.588200
13754	dm3.chrX	8,904,134 – 8,904,228	- - - intron="intron;ID=intron_FBgn0261549:7_FBgn0261549:9;Name=rdgA-in;Parent=FBtr0302665;parent_type=mRNA" - - - -	18920	8,904,134 – 8,904,228	-	5	94	95.32	-2.51	0.94	0.984343
13755	dm3.chrX	8,912,066 – 8,912,169	- - - intron="intron;ID=intron_FBgn0261549:13_FBgn0261549:14;Name=rdgA-in;Parent=FBtr0302665;parent_type=mRNA" - - - -	18921	8,912,066 – 8,912,158	+	12	118	73.98	-1.49	0.47	0.705970
13755	dm3.chrX	8,912,066 – 8,912,169		18922	8,912,072 – 8,912,169	+	12	116	76.49	-1.81	0.47	0.776690
13756	dm3.chrX	8,914,201 – 8,914,297	- - - intron="intron;ID=intron_FBgn0261549:15_FBgn0261549:16;Name=rdgA-in;Parent=FBtr0302660,FBtr0302661,FBtr0302662,FBtr0302663,FBtr0302664,FBtr0302665;parent_type=mRNA" - - - -	18923	8,914,201 – 8,914,297	+	5	96	71.35	-2.12	0.48	0.966838
13756	dm3.chrX	8,914,201 – 8,914,297		18924	8,914,201 – 8,914,297	-	5	96	71.35	-2.00	0.69	0.994894
13757	dm3.chrX	8,914,360 – 8,914,454	- - - intron="intron;ID=intron_FBgn0261549:15_FBgn0261549:16;Name=rdgA-in;Parent=FBtr0302660,FBtr0302661,FBtr0302662,FBtr0302663,FBtr0302664,FBtr0302665;parent_type=mRNA" - - - -	18925	8,914,360 – 8,914,454	+	4	94	82.39	-3.46	0.81	0.998379
13757	dm3.chrX	8,914,360 – 8,914,454		18926	8,914,360 – 8,914,454	-	4	94	82.39	-4.10	0.82	0.999279
13758	dm3.chrX	8,920,790 – 8,920,892	- - - - - - - -	18927	8,920,790 – 8,920,892	-	5	107	85.62	-1.91	0.66	0.508776
13759	dm3.chrX	8,921,201 – 8,921,258	- - CDS="CDS;ID=CDS_FBgn0052709:1_1029;Name=CG32709-cds;Parent=FBtr0305288;parent_type=mRNA" - - - - -	18928	8,921,201 – 8,921,258	+	5	57	97.89	-1.88	0.84	0.500000
13760	dm3.chrX	8,953,904 – 8,954,003	- - - intron="intron;ID=intron_FBgn0030077:7_FBgn0030077:6;Name=CG15365-in;Parent=FBtr0071357;parent_type=mRNA" - - - -	18929	8,953,904 – 8,954,003	-	5	112	78.69	-1.69	0.67	0.799180
13761	dm3.chrX	8,985,257 – 8,985,353	FBnoncoding="pre_miRNA;ID=FBtr0304369;Name=mir-13b-2-RM;Parent=FBgn0262421;Alias=CR42972-RM;Dbxref=FlyBase_Annotation_IDs:CR42972-RM,miRBase:MI0000135" - - intron="intron;ID=intron_FBgn0030086:3_FBgn0030086:4;Name=CG7033-in;Parent=FBtr0071291,FBtr0071289;parent_type=mRNA" "Rfam_10.0=RF00047;mir-2;AAKO01003387.1/9775-9842\|4.2e-31" "Noncode_2.0=n178676_u177774_NW_045688_miRNA_Anopheles\|2.0e-08" "unique_Noncode_2.0=u177774_miRNA_Anopheles\|1.7e-08" "mirBase_v16=dme-mir-13b-2\|1.3e-34"	18930	8,985,257 – 8,985,347	+	13	110	71.72	-4.71	0.42	0.999926
				18931	8,985,257 – 8,985,347	-	13	110	71.72	-4.03	0.57	0.999930
				18932	8,985,257 – 8,985,353	+	13	104	69.95	-4.34	0.54	0.999977
				18933	8,985,257 – 8,985,353	-	13	104	69.95	-3.66	0.56	0.999956
13762	dm3.chrX	9,002,428 – 9,002,498	- - - - - - - -	18934	9,002,428 – 9,002,498	+	6	74	79.35	-1.89	0.56	0.764021
13763	dm3.chrX	9,013,816 – 9,013,992	- - - - - - - -	18935	9,013,816 – 9,013,926	+	4	120	74.64	-1.08	0.68	0.538489
13763	dm3.chrX	9,013,816 – 9,013,992	- - - - - - - -	18936	9,013,892 – 9,013,992	-	3	110	73.44	-1.64	0.64	0.677993
13764	dm3.chrX	9,018,511 – 9,018,603	- - - - - - - -	18937	9,018,511 – 9,018,603	+	6	94	83.83	-2.03	0.57	0.599136
13765	dm3.chrX	9,021,613 – 9,021,714	- - - intron="intron;ID=intron_CG12664:1_CG12664:2;Name=fend-in;Parent=FBtr0071349;parent_type=mRNA" - - - -	18938	9,021,613 – 9,021,714	-	7	102	67.97	-1.22	0.55	0.928700
13766	dm3.chrX	9,022,499 – 9,022,610	- - - intron="intron;ID=intron_CG12664:1_CG12664:2;Name=fend-in;Parent=FBtr0071349;parent_type=mRNA" - - - -	18939	9,022,499 – 9,022,610	-	6	117	70.63	-1.33	0.46	0.554791
13767	dm3.chrX	9,022,776 – 9,022,829	- - - intron="intron;ID=intron_CG12664:1_CG12664:2;Name=fend-in;Parent=FBtr0071349;parent_type=mRNA" - - - -	18940	9,022,776 – 9,022,829	-	3	53	96.20	-1.80	0.94	0.882819
13768	dm3.chrX	9,025,239 – 9,025,354	- - - intron="intron;ID=intron_CG12664:1_CG12664:2;Name=fend-in;Parent=FBtr0071349;parent_type=mRNA" - - - -	18941	9,025,239 – 9,025,354	+	5	120	92.73	-0.69	0.99	0.534457
13768	dm3.chrX	9,025,239 – 9,025,354		18942	9,025,239 – 9,025,354	-	5	120	92.73	-2.40	0.93	0.982318
13769	dm3.chrX	9,026,278 – 9,026,375	- - - intron="intron;ID=intron_CG12664:1_CG12664:2;Name=fend-in;Parent=FBtr0071349;parent_type=mRNA" - - - -	18943	9,026,278 – 9,026,375	+	5	97	84.90	-1.86	0.66	0.527343
13770	dm3.chrX	9,027,444 – 9,027,528	- - - intron="intron;ID=intron_CG12664:1_CG12664:2;Name=fend-in;Parent=FBtr0071349;parent_type=mRNA" - - - -	18944	9,027,444 – 9,027,528	+	4	89	65.03	-1.05	0.69	0.942529
13770	dm3.chrX	9,027,444 – 9,027,528		18945	9,027,444 – 9,027,528	-	4	89	65.03	-0.79	0.56	0.586354
13771	dm3.chrX	9,048,977 – 9,049,066	- - - - - - - -	18946	9,048,977 – 9,049,066	+	7	94	71.32	-2.20	0.44	0.960843
13771	dm3.chrX	9,048,977 – 9,049,066	- - - - - - - -	18947	9,048,977 – 9,049,066	-	7	94	71.32	-2.31	0.55	0.994677
13772	dm3.chrX	9,074,311 – 9,074,403	- - - - - - - -	18948	9,074,311 – 9,074,403	+	6	98	81.91	-1.48	0.68	0.631886
13773	dm3.chrX	9,105,125 – 9,105,232	- - - - - - - -	18949	9,105,125 – 9,105,232	+	7	114	72.40	-1.07	0.60	0.658850
13773	dm3.chrX	9,105,125 – 9,105,232	- - - - - - - -	18950	9,105,125 – 9,105,232	-	7	114	72.40	-1.70	0.48	0.775702
13774	dm3.chrX	9,108,481 – 9,108,579	- - - - - - - -	18951	9,108,481 – 9,108,579	+	8	109	76.20	-2.11	0.65	0.987222
13774	dm3.chrX	9,108,481 – 9,108,579	- - - - - - - -	18952	9,108,481 – 9,108,579	-	8	109	76.20	-1.53	0.63	0.898640
13775	dm3.chrX	9,120,210 – 9,120,300	- - CDS="CDS;ID=CDS_CG15370:1_896;Name=CG15370-cds;Parent=FBtr0071310;parent_type=mRNA" - - - - -	18953	9,120,210 – 9,120,300	-	6	120	76.60	-1.73	0.56	0.565283
13776	dm3.chrX	9,121,803 – 9,121,960	- - CDS="CDS;ID=CDS_FBgn0030108:1_949;Name=Gr8a-cds;Parent=FBtr0071311;parent_type=mRNA" - - - - -	18954	9,121,803 – 9,121,923	-	12	120	72.42	-1.87	0.33	0.687988
13776	dm3.chrX	9,121,803 – 9,121,960		18955	9,121,843 – 9,121,960	-	12	120	71.41	-1.63	0.33	0.556863
13777	dm3.chrX	9,133,004 – 9,133,106	- - CDS="CDS;ID=CDS_CG12124:5_936;Name=mxc-cds;Parent=FBtr0071332;parent_type=mRNA" - - - - -	18956	9,133,004 – 9,133,106	-	11	114	68.70	-1.59	0.32	0.525159
13778	dm3.chrX	9,145,813 – 9,145,939	- - - intron="intron;ID=intron_CG17754:9_CG17754:3;Name=CG17754-in;Parent=FBtr0071316;parent_type=mRNA" - - - -	18957	9,145,813 – 9,145,939	-	6	130	65.78	-0.90	0.51	0.773641
13779	dm3.chrX	9,160,700 – 9,160,802	- - - intron="intron;ID=intron_FBgn0052703:9_FBgn0052703:8;Name=CG32703-in;Parent=FBtr0302965,FBtr0302966;parent_type=mRNA" - - - -	18958	9,160,700 – 9,160,802	+	5	120	69.28	-1.39	0.65	0.916693
13780	dm3.chrX	9,178,106 – 9,178,226	- - - - - - - -	18959	9,178,106 – 9,178,226	+	5	120	90.06	-1.22	0.87	0.500000
13780	dm3.chrX	9,178,106 – 9,178,226	- - - - - - - -	18960	9,178,106 – 9,178,226	-	5	120	90.06	-1.87	0.90	0.933035
13781	dm3.chrX	9,182,850 – 9,182,943	- - - intron="intron;ID=intron_FBgn0002576:3_FBgn0002576:4;Name=lz-in;Parent=FBtr0071320,FBtr0112814;parent_type=mRNA" - - - -	18961	9,182,850 – 9,182,943	-	6	99	73.15	-2.06	0.62	0.991443
13782	dm3.chrX	9,185,172 – 9,185,266	- - - intron="intron;ID=intron_FBgn0002576:3_FBgn0002576:4;Name=lz-in;Parent=FBtr0071320,FBtr0112814;parent_type=mRNA" - - - -	18962	9,185,172 – 9,185,266	+	7	105	63.44	-2.49	0.31	0.974300
13782	dm3.chrX	9,185,172 – 9,185,266		18963	9,185,172 – 9,185,266	-	7	105	63.44	-2.32	0.40	0.993126
13783	dm3.chrX	9,203,898 – 9,203,990	- - - - - - - -	18964	9,203,898 – 9,203,990	-	7	96	65.07	-1.26	0.35	0.572247
13784	dm3.chrX	9,207,086 – 9,207,152	- - - - - - - -	18965	9,207,086 – 9,207,152	-	4	73	70.86	-1.97	0.54	0.901781
13785	dm3.chrX	9,208,866 – 9,208,965	- - - - - - - -	18966	9,208,866 – 9,208,965	+	9	107	67.72	-1.57	0.34	0.598516
13786	dm3.chrX	9,209,684 – 9,209,783	- - - - - - - -	18967	9,209,684 – 9,209,783	-	6	102	87.50	-1.95	0.72	0.687666
13787	dm3.chrX	9,223,734 – 9,223,797	- - CDS="CDS;ID=CDS_FBgn0085479:1_940;Name=CG34450-cds;Parent=FBtr0112756;parent_type=mRNA" intron="intron;ID=intron_FBgn0085478:4_FBgn0085478:2;Name=CG34449-in;Parent=FBtr0112753,FBtr0112754;parent_type=mRNA" - - - -	18968	9,223,734 – 9,223,797	+	5	75	62.83	-1.90	0.34	0.779884
13788	dm3.chrX	9,225,758 – 9,225,960	- - - intron="intron;ID=intron_FBgn0085478:4_FBgn0085478:3;Name=CG34449-in;Parent=FBtr0112755;parent_type=mRNA" - - - -	18969	9,225,758 – 9,225,865	+	6	119	71.66	-1.82	0.52	0.934187
13788	dm3.chrX	9,225,758 – 9,225,960		18970	9,225,865 – 9,225,960	+	3	110	70.61	-2.80	0.55	0.991996
13789	dm3.chrX	9,234,224 – 9,234,291	- - - intron="intron;ID=intron_FBgn0085478:12_FBgn0085478:11;Name=CG34449-in;Parent=FBtr0112753,FBtr0112754,FBtr0112755;parent_type=mRNA" - - - -	18971	9,234,224 – 9,234,291	-	5	76	69.41	-2.03	0.42	0.835875
13790	dm3.chrX	9,240,872 – 9,240,963	- - - intron="intron;ID=intron_FBgn0085478:12_FBgn0085478:11;Name=CG34449-in;Parent=FBtr0112753,FBtr0112754,FBtr0112755;parent_type=mRNA" - - - -	18972	9,240,872 – 9,240,963	+	5	97	90.44	-1.87	0.81	0.715160
13790	dm3.chrX	9,240,872 – 9,240,963		18973	9,240,872 – 9,240,963	-	5	97	90.44	-2.86	0.87	0.990420
13791	dm3.chrX	9,247,230 – 9,247,356	- - - intron="intron;ID=intron_FBgn0085478:12_FBgn0085478:11;Name=CG34449-in;Parent=FBtr0112753,FBtr0112754,FBtr0112755;parent_type=mRNA" - - - -	18974	9,247,230 – 9,247,332	-	6	110	82.55	-1.60	0.77	0.860987
13791	dm3.chrX	9,247,230 – 9,247,356		18975	9,247,250 – 9,247,356	-	6	110	88.01	-1.73	0.76	0.647822
13792	dm3.chrX	9,250,253 – 9,250,381	- - - - - - - -	18976	9,250,253 – 9,250,381	+	6	134	70.98	-1.79	0.41	0.787695
13793	dm3.chrX	9,256,810 – 9,256,864	- - CDS="CDS;ID=CDS_FBgn0261260:3_905;Name=Megalin-cds;Parent=FBtr0302153;parent_type=mRNA" - - - - -	18977	9,256,810 – 9,256,864	+	10	54	77.12	-1.06	0.63	0.690659
13794	dm3.chrX	9,271,440 – 9,271,495	- - - intron="intron;ID=intron_FBgn0261260:12_FBgn0261260:11;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18978	9,271,440 – 9,271,495	-	6	56	93.01	-1.85	0.97	0.964905
13795	dm3.chrX	9,273,691 – 9,273,784	- - - intron="intron;ID=intron_FBgn0261260:12_FBgn0261260:11;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18979	9,273,691 – 9,273,784	-	6	120	65.15	-1.21	0.53	0.836379
13796	dm3.chrX	9,281,264 – 9,281,373	- - - intron="intron;ID=intron_FBgn0261260:15_FBgn0261260:13;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18980	9,281,264 – 9,281,373	+	11	117	71.05	-1.52	0.45	0.845410
13797	dm3.chrX	9,286,166 – 9,286,260	- - - intron="intron;ID=intron_FBgn0261260:15_FBgn0261260:13;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18981	9,286,166 – 9,286,260	+	4	95	77.84	-1.24	0.71	0.585491
13798	dm3.chrX	9,294,437 – 9,294,519	- - - intron="intron;ID=intron_FBgn0261260:15_FBgn0261260:13;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18982	9,294,437 – 9,294,519	+	3	82	57.32	-1.64	0.37	0.646949
13799	dm3.chrX	9,308,633 – 9,308,684	- - - intron="intron;ID=intron_FBgn0261260:15_FBgn0261260:13;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18983	9,308,633 – 9,308,684	+	5	51	83.53	-1.71	0.66	0.526658
13800	dm3.chrX	9,309,326 – 9,309,457	- - - intron="intron;ID=intron_FBgn0261260:15_FBgn0261260:13;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18984	9,309,326 – 9,309,429	+	5	115	79.36	-1.58	0.69	0.709644
13800	dm3.chrX	9,309,326 – 9,309,457		18985	9,309,356 – 9,309,457	+	5	108	76.87	-1.02	0.73	0.528035
13801	dm3.chrX	9,309,527 – 9,309,662	- - - intron="intron;ID=intron_FBgn0261260:15_FBgn0261260:13;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18986	9,309,527 – 9,309,662	-	5	164	71.59	-1.40	0.57	0.824335
13802	dm3.chrX	9,310,075 – 9,310,167	- - - intron="intron;ID=intron_FBgn0261260:15_FBgn0261260:13;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18987	9,310,075 – 9,310,167	+	4	105	81.05	-1.67	0.76	0.783707
13803	dm3.chrX	9,311,010 – 9,311,111	- - - intron="intron;ID=intron_FBgn0261260:15_FBgn0261260:13;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18988	9,311,010 – 9,311,111	-	5	109	80.06	-2.31	0.51	0.799903
13804	dm3.chrX	9,312,640 – 9,312,694	- - - intron="intron;ID=intron_FBgn0261260:15_FBgn0261260:13;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18989	9,312,640 – 9,312,694	+	4	60	60.53	-2.78	0.47	0.998749
13805	dm3.chrX	9,314,435 – 9,314,544	- - - intron="intron;ID=intron_FBgn0261260:15_FBgn0261260:13;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18990	9,314,435 – 9,314,544	+	4	109	85.27	-1.80	0.79	0.802057
13806	dm3.chrX	9,317,828 – 9,317,883	- - - intron="intron;ID=intron_FBgn0261260:15_FBgn0261260:13;Name=Megalin-in;Parent=FBtr0302153;parent_type=mRNA" - - - -	18991	9,317,828 – 9,317,883	-	7	72	62.69	-1.50	0.50	0.971626
13807	dm3.chrX	9,319,887 – 9,319,945	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	18992	9,319,887 – 9,319,945	-	9	59	81.24	-1.70	0.65	0.852145
13808	dm3.chrX	9,320,947 – 9,321,008	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	18993	9,320,947 – 9,321,008	+	8	64	59.34	-1.76	0.28	0.893198
13808	dm3.chrX	9,320,947 – 9,321,008		18994	9,320,947 – 9,321,008	-	8	64	59.34	-1.67	0.24	0.666944
13809	dm3.chrX	9,323,835 – 9,323,978	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	18995	9,323,835 – 9,323,978	-	4	170	79.47	-1.67	0.70	0.691357
13810	dm3.chrX	9,326,670 – 9,326,772	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	18996	9,326,670 – 9,326,772	-	6	110	66.96	-1.71	0.44	0.946672
13811	dm3.chrX	9,330,307 – 9,330,397	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	18997	9,330,307 – 9,330,397	+	6	96	75.14	-1.54	0.68	0.940404
13812	dm3.chrX	9,330,444 – 9,330,508	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	18998	9,330,444 – 9,330,508	-	6	69	81.50	-0.98	0.88	0.718574
13813	dm3.chrX	9,333,516 – 9,333,657	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	18999	9,333,516 – 9,333,628	+	6	113	83.36	-1.64	0.72	0.790527
				19000	9,333,516 – 9,333,628	-	6	113	83.36	-2.56	0.62	0.964744
				19001	9,333,545 – 9,333,657	+	6	113	87.00	-3.44	0.81	0.997893
				19002	9,333,545 – 9,333,657	-	6	113	87.00	-1.97	0.72	0.788362
13814	dm3.chrX	9,341,966 – 9,342,062	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	19003	9,341,966 – 9,342,062	-	4	98	58.45	-1.35	0.74	0.994192
13815	dm3.chrX	9,344,203 – 9,344,269	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	19004	9,344,203 – 9,344,269	-	5	70	92.46	-1.21	0.94	0.697889
13816	dm3.chrX	9,348,928 – 9,349,028	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	19005	9,348,928 – 9,349,028	+	4	108	94.23	-1.76	0.83	0.509412
13816	dm3.chrX	9,348,928 – 9,349,028		19006	9,348,928 – 9,349,028	-	4	108	94.23	-1.68	0.94	0.879991
13817	dm3.chrX	9,354,375 – 9,354,475	- - - intron="intron;ID=intron_FBgn0261260:16_FBgn0261260:14;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	19007	9,354,375 – 9,354,475	+	3	102	94.06	-0.83	1.01	0.694872
13818	dm3.chrX	9,366,360 – 9,366,503	- - - - - - - -	19008	9,366,360 – 9,366,469	+	11	117	80.87	-2.27	0.58	0.957277
				19009	9,366,360 – 9,366,469	-	11	117	80.87	-2.27	0.62	0.973166
				19010	9,366,398 – 9,366,503	+	8	115	68.80	-2.72	0.50	0.999522
				19011	9,366,398 – 9,366,503	-	8	115	68.80	-2.48	0.56	0.999504
13819	dm3.chrX	9,375,357 – 9,375,448	- - - intron="intron;ID=intron_FBgn0261260:17_FBgn0261260:16;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	19012	9,375,357 – 9,375,448	+	4	91	74.77	-1.08	0.72	0.641716
13819	dm3.chrX	9,375,357 – 9,375,448		19013	9,375,357 – 9,375,448	-	4	91	74.77	-2.59	0.62	0.990916
13820	dm3.chrX	9,382,341 – 9,382,433	- - - intron="intron;ID=intron_FBgn0261260:17_FBgn0261260:16;Name=Megalin-in;Parent=FBtr0302154;parent_type=mRNA" - - - -	19014	9,382,341 – 9,382,433	-	5	111	66.87	-0.77	0.60	0.684271
13821	dm3.chrX	9,390,142 – 9,390,254	- - - - - - - -	19015	9,390,142 – 9,390,254	+	7	122	68.80	-2.08	0.33	0.732292
13821	dm3.chrX	9,390,142 – 9,390,254	- - - - - - - -	19016	9,390,142 – 9,390,254	-	7	122	68.80	-1.80	0.38	0.737227
13822	dm3.chrX	9,393,385 – 9,393,476	- - - - - - - -	19017	9,393,385 – 9,393,476	+	5	110	81.54	-2.09	0.54	0.523970
13823	dm3.chrX	9,398,390 – 9,398,453	- - - - - - - -	19018	9,398,390 – 9,398,453	+	11	64	82.26	-2.99	0.71	0.997732
13823	dm3.chrX	9,398,390 – 9,398,453	- - - - - - - -	19019	9,398,390 – 9,398,453	-	11	64	82.26	-4.14	0.72	0.999663
13824	dm3.chrX	9,399,321 – 9,399,417	- - - - - - - -	19020	9,399,321 – 9,399,417	-	7	114	60.09	-1.47	0.28	0.500000
13825	dm3.chrX	9,424,474 – 9,424,544	- - - - - - - -	19021	9,424,474 – 9,424,544	+	10	80	79.52	-2.05	0.49	0.576159
13826	dm3.chrX	9,426,368 – 9,426,459	- - - - - - - -	19022	9,426,368 – 9,426,459	-	10	103	79.20	-1.32	0.62	0.508504
13827	dm3.chrX	9,432,792 – 9,432,907	- - - - - - - -	19023	9,432,792 – 9,432,907	+	3	115	89.74	-3.05	0.90	0.994680
13828	dm3.chrX	9,439,393 – 9,439,503	- - - - - - - -	19024	9,439,393 – 9,439,503	+	6	120	78.34	-2.21	0.66	0.976112
13829	dm3.chrX	9,439,629 – 9,439,723	- - - - - - - -	19025	9,439,629 – 9,439,723	+	6	95	73.62	-3.00	0.44	0.988730
13829	dm3.chrX	9,439,629 – 9,439,723	- - - - - - - -	19026	9,439,629 – 9,439,723	-	6	95	73.62	-1.82	0.44	0.545321
13830	dm3.chrX	9,442,262 – 9,442,333	- - - - - - - -	19027	9,442,262 – 9,442,333	-	13	78	68.07	-0.88	0.40	0.557644
13831	dm3.chrX	9,445,535 – 9,445,639	- - - - - - - -	19028	9,445,535 – 9,445,639	+	3	104	67.71	-1.70	0.68	0.921752
13832	dm3.chrX	9,448,548 – 9,448,615	- - - - - - - -	19029	9,448,548 – 9,448,615	+	6	67	74.83	-1.70	0.54	0.894769
13832	dm3.chrX	9,448,548 – 9,448,615	- - - - - - - -	19030	9,448,548 – 9,448,615	-	6	67	74.83	-1.54	0.54	0.822628
13833	dm3.chrX	9,452,191 – 9,452,328	FBnoncoding="ncRNA;ID=FBtr0303397;Name=CR42767-RA;Parent=FBgn0261835;Dbxref=FlyBase_Annotation_IDs:CR42767-RA;score_text=Weakly" - - - - - - -	19031	9,452,191 – 9,452,288	+	4	102	64.48	-1.26	0.62	0.947479
				19032	9,452,191 – 9,452,288	-	4	102	64.48	-1.92	0.47	0.959849
				19033	9,452,222 – 9,452,328	+	4	106	70.77	-1.86	0.58	0.949962
				19034	9,452,222 – 9,452,328	-	4	106	70.77	-2.58	0.58	0.995205
13834	dm3.chrX	9,452,511 – 9,452,611	- - - - - - - -	19035	9,452,511 – 9,452,611	-	3	105	89.10	-1.66	0.83	0.602688
13835	dm3.chrX	9,478,679 – 9,478,792	- - - - - - - -	19036	9,478,679 – 9,478,792	+	7	118	63.37	-2.63	0.23	0.908032
13836	dm3.chrX	9,479,254 – 9,479,357	- - - - - - - -	19037	9,479,254 – 9,479,357	-	7	116	73.21	-1.80	0.46	0.670301
13837	dm3.chrX	9,487,180 – 9,487,287	- - - - - - - -	19038	9,487,180 – 9,487,287	+	6	109	72.28	-1.58	0.50	0.821876
13838	dm3.chrX	9,488,534 – 9,488,642	- - - - - - - -	19039	9,488,534 – 9,488,642	+	4	110	80.06	-1.94	0.65	0.782583
13838	dm3.chrX	9,488,534 – 9,488,642	- - - - - - - -	19040	9,488,534 – 9,488,642	-	4	110	80.06	-1.19	0.78	0.559129
13839	dm3.chrX	9,493,280 – 9,493,387	- - - - - - - -	19041	9,493,280 – 9,493,387	+	6	118	73.78	-2.20	0.67	0.993809
13840	dm3.chrX	9,494,054 – 9,494,137	- - - - - - - -	19042	9,494,054 – 9,494,137	+	6	84	83.65	-1.48	0.80	0.819356
13840	dm3.chrX	9,494,054 – 9,494,137	- - - - - - - -	19043	9,494,054 – 9,494,137	-	6	84	83.65	-1.94	0.67	0.821118
13841	dm3.chrX	9,494,496 – 9,494,592	- - - - - - - -	19044	9,494,496 – 9,494,592	-	5	99	94.01	-0.92	0.97	0.577791
13842	dm3.chrX	9,510,561 – 9,510,663	- - - intron="intron;ID=intron_FBgn0261931:4_FBgn0261931:6;Name=CG42797-in;Parent=FBtr0303708,FBtr0303710;parent_type=mRNA" - - - -	19045	9,510,561 – 9,510,663	+	12	118	75.70	-1.36	0.57	0.828081
13843	dm3.chrX	9,529,012 – 9,529,125	- - - intron="intron;ID=intron_FBgn0028341:7_FBgn0028341:5;Name=l(1)G0232-in;Parent=FBtr0071407,FBtr0303559;parent_type=mRNA" - - - -	19046	9,529,012 – 9,529,125	+	6	113	72.55	-1.60	0.55	0.930420
13844	dm3.chrX	9,534,872 – 9,535,036	- - - - - - - -	19047	9,534,872 – 9,534,973	-	3	101	92.74	-2.10	0.97	0.977270
				19048	9,534,909 – 9,535,013	+	6	108	77.91	-2.37	0.53	0.954512
				19049	9,534,909 – 9,535,013	-	6	108	77.91	-3.60	0.68	0.999476
				19050	9,534,938 – 9,535,036	+	7	118	65.34	-2.06	0.31	0.870553
				19051	9,534,938 – 9,535,036	-	7	118	65.34	-2.67	0.42	0.998176
13845	dm3.chrX	9,537,029 – 9,537,126	- - - - - - - -	19052	9,537,029 – 9,537,126	+	4	97	86.92	-1.30	0.87	0.688370
13846	dm3.chrX	9,538,637 – 9,538,908	- - - intron="intron;ID=intron_FBgn0028341:12_FBgn0028341:11;Name=l(1)G0232-in;Parent=FBtr0071406;parent_type=mRNA" - - - -	19053	9,538,637 – 9,538,755	+	5	120	92.75	-2.72	0.73	0.892516
				19054	9,538,637 – 9,538,755	-	5	120	92.75	-2.49	0.69	0.668663
				19055	9,538,677 – 9,538,793	+	5	118	86.77	-2.62	0.57	0.753119
				19056	9,538,677 – 9,538,793	-	5	118	86.77	-2.40	0.67	0.847236
				19057	9,538,717 – 9,538,833	-	5	120	88.58	-2.37	0.67	0.734355
				19058	9,538,793 – 9,538,908	+	5	120	94.19	-2.03	0.87	0.861818
13847	dm3.chrX	9,539,343 – 9,539,462	- - - intron="intron;ID=intron_FBgn0028341:12_FBgn0028341:11;Name=l(1)G0232-in;Parent=FBtr0071406;parent_type=mRNA" - - - -	19059	9,539,343 – 9,539,462	+	5	120	93.05	-1.96	0.77	0.505229
13848	dm3.chrX	9,540,875 – 9,540,967	- - - - - - - -	19060	9,540,875 – 9,540,967	+	6	93	76.39	-2.37	0.70	0.995415
13848	dm3.chrX	9,540,875 – 9,540,967	- - - - - - - -	19061	9,540,875 – 9,540,967	-	6	93	76.39	-1.43	0.56	0.676607
13849	dm3.chrX	9,548,699 – 9,548,760	- - - - - - - -	19062	9,548,699 – 9,548,760	+	5	61	89.34	-1.08	0.91	0.566011
13850	dm3.chrX	9,552,683 – 9,552,743	- - - intron="intron;ID=intron_FBgn0028341:16_FBgn0028341:15;Name=l(1)G0232-in;Parent=FBtr0100193;parent_type=mRNA" - - - -	19063	9,552,683 – 9,552,743	+	6	71	77.70	-1.26	0.81	0.865240
13851	dm3.chrX	9,552,915 – 9,553,012	- - - - - - - -	19064	9,552,915 – 9,553,012	+	7	98	73.90	-2.14	0.39	0.848899
13851	dm3.chrX	9,552,915 – 9,553,012	- - - - - - - -	19065	9,552,915 – 9,553,012	-	7	98	73.90	-2.66	0.54	0.997228
13852	dm3.chrX	9,555,652 – 9,555,767	- - - intron="intron;ID=intron_CG3106:1_CG3106:2;Name=CG3106-in;Parent=FBtr0071403;parent_type=mRNA" - - - -	19066	9,555,652 – 9,555,767	-	6	120	65.68	-1.92	0.31	0.752170
13853	dm3.chrX	9,576,106 – 9,576,206	- - CDS="CDS;ID=CDS_FBgn0015624:13_917;Name=nej-cds;Parent=FBtr0302722,FBtr0302723;parent_type=mRNA" - - - - -	19067	9,576,106 – 9,576,206	-	6	112	82.07	-1.68	0.63	0.532935
13854	dm3.chrX	9,576,226 – 9,576,320	- - CDS="CDS;ID=CDS_FBgn0015624:13_917;Name=nej-cds;Parent=FBtr0302722,FBtr0302723;parent_type=mRNA" - - - - -	19068	9,576,226 – 9,576,320	-	9	99	66.85	-0.87	0.49	0.781585
13855	dm3.chrX	9,578,368 – 9,578,436	- - - intron="intron;ID=intron_FBgn0015624:15_FBgn0015624:14;Name=nej-in;Parent=FBtr0302722,FBtr0071402;parent_type=mRNA" - - - -	19069	9,578,368 – 9,578,436	+	5	73	90.67	-2.33	0.81	0.926175
13855	dm3.chrX	9,578,368 – 9,578,436		19070	9,578,368 – 9,578,436	-	5	73	90.67	-3.75	0.88	0.998256
13856	dm3.chrX	9,583,851 – 9,583,947	- - - - - - - -	19071	9,583,851 – 9,583,947	-	5	96	88.84	-1.46	0.85	0.621574
13857	dm3.chrX	9,584,067 – 9,584,158	- - - - - - - -	19072	9,584,067 – 9,584,158	-	6	101	69.49	-0.84	0.63	0.701132
13858	dm3.chrX	9,584,267 – 9,584,336	- - - - - - - -	19073	9,584,267 – 9,584,336	-	4	70	64.03	-0.78	0.56	0.707458
13859	dm3.chrX	9,592,546 – 9,592,618	- - - - - - - -	19074	9,592,546 – 9,592,618	+	9	80	89.88	-2.02	0.80	0.854493
13860	dm3.chrX	9,594,982 – 9,595,044	- - - - - - - -	19075	9,594,982 – 9,595,044	-	6	62	72.96	-2.55	0.28	0.656425
13861	dm3.chrX	9,606,816 – 9,606,931	- - - - - - - -	19076	9,606,816 – 9,606,931	-	7	121	68.93	-1.47	0.46	0.840095
13862	dm3.chrX	9,607,921 – 9,608,014	- - - - - - - -	19077	9,607,921 – 9,608,014	+	10	115	83.09	-1.34	0.86	0.869576
13863	dm3.chrX	9,615,431 – 9,615,565	- - - - - - - -	19078	9,615,431 – 9,615,539	+	5	108	98.70	-2.46	0.94	0.971032
				19079	9,615,431 – 9,615,539	-	5	108	98.70	-1.14	0.96	0.536703
				19080	9,615,461 – 9,615,565	-	9	120	90.35	-1.72	0.77	0.532887
13864	dm3.chrX	9,621,411 – 9,621,501	- - - - - - - -	19081	9,621,411 – 9,621,501	-	5	90	76.78	-1.71	0.61	0.809078
13865	dm3.chrX	9,635,180 – 9,635,277	- - - intron="intron;ID=intron_FBgn0020378:3_FBgn0020378:5;Name=Sp1-in;Parent=FBtr0071381;parent_type=mRNA" - - - -	19082	9,635,180 – 9,635,277	+	5	98	85.34	-1.77	0.89	0.949170
13866	dm3.chrX	9,635,766 – 9,635,866	- - - intron="intron;ID=intron_FBgn0020378:3_FBgn0020378:5;Name=Sp1-in;Parent=FBtr0071381;parent_type=mRNA" - - - -	19083	9,635,766 – 9,635,866	-	6	109	78.38	-1.60	0.57	0.581894
13867	dm3.chrX	9,653,270 – 9,653,361	- - - - - - - -	19084	9,653,270 – 9,653,361	-	7	119	72.74	-1.18	0.72	0.869811
13868	dm3.chrX	9,661,588 – 9,661,672	- - - - - - - -	19085	9,661,588 – 9,661,672	+	3	84	99.21	-1.26	0.95	0.545808
13868	dm3.chrX	9,661,588 – 9,661,672	- - - - - - - -	19086	9,661,588 – 9,661,672	-	3	84	99.21	-1.05	1.01	0.740631
13869	dm3.chrX	9,670,068 – 9,670,199	- - - - - - - -	19087	9,670,068 – 9,670,199	+	5	132	71.62	-1.56	0.50	0.808344
13870	dm3.chrX	9,677,118 – 9,677,208	- - - - - - - -	19088	9,677,118 – 9,677,208	+	4	92	82.99	-2.13	0.68	0.821813
13871	dm3.chrX	9,678,220 – 9,678,313	- - - - - - - -	19089	9,678,220 – 9,678,313	+	6	101	78.61	-1.63	0.63	0.799824
13871	dm3.chrX	9,678,220 – 9,678,313	- - - - - - - -	19090	9,678,220 – 9,678,313	-	6	101	78.61	-2.84	0.67	0.996566
13872	dm3.chrX	9,688,137 – 9,688,282	- - - intron="intron;ID=intron_CG32698:1_CG32698:2;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19091	9,688,137 – 9,688,244	+	5	108	95.25	-1.66	0.86	0.556428
13872	dm3.chrX	9,688,137 – 9,688,282		19092	9,688,175 – 9,688,282	+	6	111	76.18	-1.64	0.50	0.648415
13873	dm3.chrX	9,691,917 – 9,692,035	- - - intron="intron;ID=intron_CG32698:1_CG32698:2;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19093	9,691,917 – 9,692,035	-	6	120	81.74	-2.21	0.60	0.902301
13874	dm3.chrX	9,693,013 – 9,693,069	- - - intron="intron;ID=intron_CG32698:1_CG32698:2;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19094	9,693,013 – 9,693,069	-	3	59	60.92	-1.41	0.62	0.960858
13875	dm3.chrX	9,707,063 – 9,707,154	- - - intron="intron;ID=intron_CG32698:2_CG32698:3;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19095	9,707,063 – 9,707,154	+	5	91	75.60	-1.57	0.65	0.760354
13876	dm3.chrX	9,709,301 – 9,709,398	- - - intron="intron;ID=intron_CG32698:2_CG32698:3;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19096	9,709,301 – 9,709,398	-	8	111	65.42	-2.25	0.29	0.928123
13877	dm3.chrX	9,710,762 – 9,710,816	- - - intron="intron;ID=intron_CG32698:2_CG32698:3;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19097	9,710,762 – 9,710,816	-	3	54	91.98	-1.32	0.95	0.781859
13878	dm3.chrX	9,714,350 – 9,714,411	- - - intron="intron;ID=intron_CG32698:2_CG32698:3;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19098	9,714,350 – 9,714,411	-	9	64	72.66	-1.11	0.48	0.525521
13879	dm3.chrX	9,722,612 – 9,722,718	- - - intron="intron;ID=intron_CG32698:2_CG32698:3;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19099	9,722,612 – 9,722,718	+	5	111	71.80	-0.52	0.70	0.510462
13880	dm3.chrX	9,722,787 – 9,722,857	- - - intron="intron;ID=intron_CG32698:2_CG32698:3;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19100	9,722,787 – 9,722,857	+	5	70	68.49	-0.84	0.95	0.945498
13881	dm3.chrX	9,731,199 – 9,731,290	- - - intron="intron;ID=intron_CG32698:5_CG32698:6;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19101	9,731,199 – 9,731,290	+	11	99	84.86	-1.10	0.79	0.545573
13882	dm3.chrX	9,733,169 – 9,733,280	- - - intron="intron;ID=intron_CG32698:5_CG32698:6;Name=CG32698-in;Parent=FBtr0071386;parent_type=mRNA" - - - -	19102	9,733,169 – 9,733,280	-	6	115	78.52	-1.96	0.59	0.904649
13883	dm3.chrX	9,744,369 – 9,744,462	- - - - - - - -	19103	9,744,369 – 9,744,462	-	12	97	80.31	-1.37	0.63	0.643073
13884	dm3.chrX	9,747,218 – 9,747,363	- - - - - - - -	19104	9,747,218 – 9,747,363	-	12	149	89.04	-1.31	0.84	0.628202
13885	dm3.chrX	9,752,990 – 9,753,123	- - - - - - - -	19105	9,752,990 – 9,753,123	-	5	156	65.58	-0.78	0.57	0.766863
13886	dm3.chrX	9,767,037 – 9,767,133	- - - - - - - -	19106	9,767,037 – 9,767,133	+	7	100	70.03	-1.58	0.42	0.620520
13887	dm3.chrX	9,768,091 – 9,768,198	- - - - - - - -	19107	9,768,091 – 9,768,198	+	6	126	67.28	-1.49	0.50	0.890750
13888	dm3.chrX	9,780,118 – 9,780,217	- - - - - - - -	19108	9,780,118 – 9,780,217	-	6	106	73.41	-3.03	0.30	0.936468
13889	dm3.chrX	9,786,286 – 9,786,404	- - - - - - - -	19109	9,786,286 – 9,786,404	+	5	120	73.42	-2.28	0.47	0.951678
13889	dm3.chrX	9,786,286 – 9,786,404	- - - - - - - -	19110	9,786,286 – 9,786,404	-	5	120	73.42	-1.63	0.46	0.589390
13890	dm3.chrX	9,792,072 – 9,792,162	- - - - - - - -	19111	9,792,072 – 9,792,162	+	4	90	84.34	-1.86	0.70	0.621996
13891	dm3.chrX	9,799,468 – 9,799,604	- - - - - - - -	19112	9,799,468 – 9,799,604	+	5	139	47.67	-2.42	0.17	0.962170
13891	dm3.chrX	9,799,468 – 9,799,604	- - - - - - - -	19113	9,799,468 – 9,799,604	-	5	139	47.67	-2.38	0.05	0.546537
13892	dm3.chrX	9,821,935 – 9,822,008	- - - - - - - -	19114	9,821,935 – 9,822,008	+	5	73	72.05	-1.99	0.49	0.937453
13893	dm3.chrX	9,829,353 – 9,829,443	- - - - - - - -	19115	9,829,353 – 9,829,443	-	9	103	66.88	-0.83	0.51	0.825242
13894	dm3.chrX	9,832,762 – 9,832,822	- - - - - - - -	19116	9,832,762 – 9,832,822	+	12	68	78.55	-1.91	0.51	0.817701
13895	dm3.chrX	9,836,145 – 9,836,236	- - - - - - - -	19117	9,836,145 – 9,836,236	-	7	99	76.38	-2.07	0.44	0.633010
13896	dm3.chrX	9,838,509 – 9,838,611	- - - - - - - -	19118	9,838,509 – 9,838,611	+	7	103	86.88	-2.49	0.60	0.843476
13897	dm3.chrX	9,840,070 – 9,840,172	- - - - - - - -	19119	9,840,070 – 9,840,172	+	7	109	56.43	-1.05	0.33	0.741439
13898	dm3.chrX	9,844,618 – 9,844,717	- - - - - - - -	19120	9,844,618 – 9,844,717	+	6	104	58.87	-1.26	0.31	0.658484
13899	dm3.chrX	9,847,739 – 9,847,802	- - - - - - - -	19121	9,847,739 – 9,847,802	+	5	72	87.08	-2.19	0.69	0.776571
13899	dm3.chrX	9,847,739 – 9,847,802	- - - - - - - -	19122	9,847,739 – 9,847,802	-	5	72	87.08	-4.27	0.86	0.999175
13900	dm3.chrX	9,852,274 – 9,852,366	- - - - - - - -	19123	9,852,274 – 9,852,366	-	5	99	67.37	-0.93	0.53	0.616891
13901	dm3.chrX	9,859,446 – 9,859,510	- - CDS="CDS;ID=CDS_FBgn0030164:1_950;Name=CG1889-cds;Parent=FBtr0112969;parent_type=mRNA" - - - - -	19124	9,859,446 – 9,859,510	-	9	68	73.11	-0.86	0.68	0.661460
13902	dm3.chrX	9,870,743 – 9,870,847	- - - - - - - -	19125	9,870,743 – 9,870,847	-	6	115	62.58	-1.16	0.37	0.600335
13903	dm3.chrX	9,876,493 – 9,876,622	- - - - - - - -	19126	9,876,493 – 9,876,606	-	5	114	96.10	-1.75	0.85	0.539753
13903	dm3.chrX	9,876,493 – 9,876,622	- - - - - - - -	19127	9,876,520 – 9,876,622	-	5	103	96.07	-1.65	0.90	0.707016
13904	dm3.chrX	9,890,390 – 9,890,486	- - - intron="intron;ID=intron_CG32694:2_CG32694:3;Name=CG32694-in;Parent=FBtr0071410,FBtr0071411,FBtr0071412,FBtr0071413;parent_type=mRNA" - - - -	19128	9,890,390 – 9,890,486	+	4	96	83.68	-1.96	0.63	0.517044
13905	dm3.chrX	9,892,919 – 9,893,017	- - - intron="intron;ID=intron_CG32694:2_CG32694:3;Name=CG32694-in;Parent=FBtr0071410,FBtr0071411,FBtr0071412,FBtr0071413;parent_type=mRNA" - - - -	19129	9,892,919 – 9,893,017	-	5	107	87.73	-3.48	0.79	0.996649
13906	dm3.chrX	9,895,036 – 9,895,140	- - CDS="CDS;ID=CDS_CG32694:10_920;Name=CG32694-cds;Parent=FBtr0071410;parent_type=mRNA" - - - - -	19130	9,895,036 – 9,895,140	-	5	104	88.37	-2.66	0.63	0.857954
13907	dm3.chrX	9,899,684 – 9,899,774	- - CDS="CDS;ID=CDS_CG32694:7_920;Name=CG32694-cds;Parent=FBtr0071411,FBtr0071412;parent_type=mRNA" - - - - -	19131	9,899,684 – 9,899,774	-	13	115	65.03	-0.66	0.45	0.657639
13908	dm3.chrX	9,915,664 – 9,915,756	- - - - - - - -	19132	9,915,664 – 9,915,756	+	5	92	85.51	-0.97	0.91	0.612928
13909	dm3.chrX	9,917,620 – 9,917,727	- - - - - - - -	19133	9,917,620 – 9,917,727	-	7	111	78.30	-1.38	0.64	0.656621
13910	dm3.chrX	9,935,928 – 9,936,035	- - CDS="CDS;ID=CDS_FBgn0030171:13_936;Name=Cht6-cds;Parent=FBtr0112972;parent_type=mRNA" - - - - -	19134	9,935,928 – 9,936,035	+	3	107	99.38	-2.35	0.98	0.979618
13910	dm3.chrX	9,935,928 – 9,936,035		19135	9,935,928 – 9,936,035	-	3	107	99.38	-1.12	0.98	0.615922
13911	dm3.chrX	9,960,040 – 9,960,159	- - - - - - - -	19136	9,960,040 – 9,960,159	+	5	120	90.70	-1.73	0.94	0.937628
13912	dm3.chrX	9,963,035 – 9,963,132	- - - - - - - -	19137	9,963,035 – 9,963,132	+	4	97	90.83	-1.41	0.86	0.519313
13913	dm3.chrX	9,965,663 – 9,965,763	- - - - - - - -	19138	9,965,663 – 9,965,763	+	6	110	66.71	-1.59	0.48	0.961747
13914	dm3.chrX	9,972,367 – 9,972,420	- - - intron="intron;ID=intron_CG32685:2_CG32685:3;Name=CG32685-in;Parent=FBtr0071489;parent_type=mRNA" - - - -	19139	9,972,367 – 9,972,420	+	5	59	75.49	-2.61	0.47	0.960033
13914	dm3.chrX	9,972,367 – 9,972,420		19140	9,972,367 – 9,972,420	-	5	59	75.49	-2.62	0.51	0.978578
13915	dm3.chrX	9,980,382 – 9,980,489	- - - - - - - -	19141	9,980,382 – 9,980,489	-	5	107	75.51	-2.26	0.48	0.909779
13916	dm3.chrX	9,982,193 – 9,982,313	- - - intron="intron;ID=intron_FBgn0083940:2_FBgn0083940:3;Name=CG34104-in;Parent=FBtr0110782,FBtr0110783;parent_type=mRNA" - - - -	19142	9,982,193 – 9,982,313	+	3	120	93.82	-1.43	0.93	0.720180
13917	dm3.chrX	9,985,311 – 9,985,389	- - - intron="intron;ID=intron_FBgn0083940:2_FBgn0083940:3;Name=CG34104-in;Parent=FBtr0110782,FBtr0110783;parent_type=mRNA" - - - -	19143	9,985,311 – 9,985,389	+	5	84	66.19	-1.55	0.41	0.601761
13917	dm3.chrX	9,985,311 – 9,985,389		19144	9,985,311 – 9,985,389	-	5	84	66.19	-1.22	0.49	0.656775
13918	dm3.chrX	9,988,744 – 9,988,839	- - - intron="intron;ID=intron_FBgn0083940:2_FBgn0083940:3;Name=CG34104-in;Parent=FBtr0110782,FBtr0110783;parent_type=mRNA" - - - -	19145	9,988,744 – 9,988,839	+	3	95	97.19	-3.65	0.98	0.998055
13919	dm3.chrX	10,001,355 – 10,001,471	- - - intron="intron;ID=intron_FBgn0083940:3_FBgn0083940:4;Name=CG34104-in;Parent=FBtr0110782,FBtr0110783;parent_type=mRNA" - - - -	19146	10,001,355 – 10,001,471	+	4	116	88.92	-2.01	0.85	0.905084
13920	dm3.chrX	10,001,925 – 10,002,033	- - - intron="intron;ID=intron_FBgn0083940:3_FBgn0083940:4;Name=CG34104-in;Parent=FBtr0110782,FBtr0110783;parent_type=mRNA" - - - -	19147	10,001,925 – 10,002,033	+	6	115	68.02	-2.30	0.40	0.984938
13920	dm3.chrX	10,001,925 – 10,002,033		19148	10,001,925 – 10,002,033	-	6	115	68.02	-2.66	0.46	0.998310
13921	dm3.chrX	10,007,266 – 10,007,366	- - - intron="intron;ID=intron_FBgn0083940:3_FBgn0083940:4;Name=CG34104-in;Parent=FBtr0110782,FBtr0110783;parent_type=mRNA" - - - -	19149	10,007,266 – 10,007,366	-	4	111	62.56	-1.49	0.40	0.650645
13922	dm3.chrX	10,011,370 – 10,011,555	- - - intron="intron;ID=intron_FBgn0083940:3_FBgn0083940:4;Name=CG34104-in;Parent=FBtr0110782,FBtr0110783;parent_type=mRNA" - - - -	19150	10,011,370 – 10,011,487	+	5	120	83.06	-1.08	1.01	0.928785
13922	dm3.chrX	10,011,370 – 10,011,555		19151	10,011,447 – 10,011,555	-	5	120	82.69	-2.66	0.84	0.994792
13923	dm3.chrX	10,023,066 – 10,023,198	- - - intron="intron;ID=intron_FBgn0083940:4_FBgn0083940:5;Name=CG34104-in;Parent=FBtr0110782,FBtr0110783;parent_type=mRNA" - - - -	19152	10,023,066 – 10,023,180	+	5	120	84.41	-1.41	0.78	0.528178
				19153	10,023,066 – 10,023,180	-	5	120	84.41	-1.80	0.82	0.886203
				19154	10,023,106 – 10,023,198	+	5	98	96.61	-1.30	0.98	0.808943
				19155	10,023,106 – 10,023,198	-	5	98	96.61	-1.29	0.94	0.617010
13924	dm3.chrX	10,025,947 – 10,026,059	- - - intron="intron;ID=intron_FBgn0083940:4_FBgn0083940:5;Name=CG34104-in;Parent=FBtr0110782,FBtr0110783;parent_type=mRNA" - - - -	19156	10,025,947 – 10,026,059	+	6	120	60.86	-2.19	0.22	0.630522
13925	dm3.chrX	10,041,386 – 10,041,496	- - - intron="intron;ID=intron_FBgn0083940:9_FBgn0083940:10;Name=CG34104-in;Parent=FBtr0110783;parent_type=mRNA" - - - -	19157	10,041,386 – 10,041,496	+	5	119	83.17	-1.83	0.66	0.592495
13926	dm3.chrX	10,062,206 – 10,062,302	- - - - - - - -	19158	10,062,206 – 10,062,302	+	6	117	67.40	-1.07	0.52	0.826389
13927	dm3.chrX	10,064,020 – 10,064,109	- - - - - - - -	19159	10,064,020 – 10,064,109	-	5	89	94.87	-1.22	0.93	0.571773
13928	dm3.chrX	10,064,974 – 10,065,026	- - - - - - - -	19160	10,064,974 – 10,065,026	+	6	52	93.72	-2.32	1.00	0.992402
13929	dm3.chrX	10,071,470 – 10,071,588	- - - - - - - -	19161	10,071,470 – 10,071,588	+	5	118	84.50	-1.73	0.84	0.886938
13930	dm3.chrX	10,072,459 – 10,072,567	- - - - - - - -	19162	10,072,459 – 10,072,567	+	5	119	75.80	-2.87	0.46	0.973828
13930	dm3.chrX	10,072,459 – 10,072,567	- - - - - - - -	19163	10,072,459 – 10,072,567	-	5	119	75.80	-2.49	0.36	0.611837
13931	dm3.chrX	10,076,157 – 10,076,249	- - - - - - - -	19164	10,076,157 – 10,076,249	+	6	108	65.59	-1.67	0.42	0.895006
13931	dm3.chrX	10,076,157 – 10,076,249	- - - - - - - -	19165	10,076,157 – 10,076,249	-	6	108	65.59	-2.15	0.51	0.995419
13932	dm3.chrX	10,077,128 – 10,077,227	- - - - - - - -	19166	10,077,128 – 10,077,227	-	6	119	74.45	-2.10	0.51	0.905025
13933	dm3.chrX	10,092,436 – 10,092,537	- - - - - - - -	19167	10,092,436 – 10,092,537	+	4	107	74.33	-1.25	0.62	0.517491
13934	dm3.chrX	10,094,388 – 10,094,504	- - - - - - - -	19168	10,094,388 – 10,094,504	-	4	119	71.73	-1.39	0.65	0.752507
13935	dm3.chrX	10,094,726 – 10,094,779	- - - - - - - -	19169	10,094,726 – 10,094,779	+	9	54	90.74	-2.29	0.73	0.829165
13936	dm3.chrX	10,094,954 – 10,095,055	- - - - - - - -	19170	10,094,954 – 10,095,055	-	3	102	93.77	-1.46	0.89	0.552415
13937	dm3.chrX	10,102,144 – 10,102,237	- - - - - - - -	19171	10,102,144 – 10,102,237	+	9	99	61.73	-1.45	0.36	0.914861
13938	dm3.chrX	10,106,581 – 10,106,676	- - - - - - - -	19172	10,106,581 – 10,106,676	-	3	96	88.15	-1.03	0.92	0.526465
13939	dm3.chrX	10,125,239 – 10,125,336	- - CDS="CDS;ID=CDS_CG2961:2_904;Name=Ipod-cds;Parent=FBtr0071484;parent_type=mRNA" - - - - -	19173	10,125,239 – 10,125,336	-	7	121	58.16	-1.80	0.32	0.883536
13940	dm3.chrX	10,140,085 – 10,140,245	- - - - - - - -	19174	10,140,085 – 10,140,245	+	4	178	69.25	-2.62	0.44	0.975678
13941	dm3.chrX	10,146,859 – 10,146,993	- - - - - - - -	19175	10,146,859 – 10,146,954	+	4	105	78.80	-1.43	0.75	0.685399
				19176	10,146,859 – 10,146,954	-	4	105	78.80	-2.01	0.90	0.983875
				19177	10,146,896 – 10,146,993	-	5	106	83.15	-1.43	0.78	0.638675
13942	dm3.chrX	10,147,592 – 10,147,705	- - - - - - - -	19178	10,147,592 – 10,147,705	+	5	113	91.68	-1.66	0.83	0.602952
13943	dm3.chrX	10,150,791 – 10,150,933	- - - - - - - -	19179	10,150,791 – 10,150,933	+	5	157	78.84	-1.49	0.64	0.576011
13943	dm3.chrX	10,150,791 – 10,150,933	- - - - - - - -	19180	10,150,791 – 10,150,933	-	5	157	78.84	-2.86	0.59	0.989014
13944	dm3.chrX	10,176,351 – 10,176,478	- - - intron="intron;ID=intron_FBgn0259170:7_FBgn0259170:6;Name=alpha-Man-I-in;Parent=FBtr0300512;parent_type=mRNA" - - - -	19181	10,176,351 – 10,176,446	-	7	96	73.29	-0.95	0.63	0.778413
				19182	10,176,378 – 10,176,478	+	7	106	81.32	-0.84	0.82	0.565657
				19183	10,176,378 – 10,176,478	-	7	106	81.32	-1.75	0.80	0.956084
13945	dm3.chrX	10,177,852 – 10,177,966	- - - intron="intron;ID=intron_FBgn0259170:7_FBgn0259170:6;Name=alpha-Man-I-in;Parent=FBtr0300512;parent_type=mRNA" - - - -	19184	10,177,852 – 10,177,966	-	5	120	93.32	-1.44	0.87	0.507116
13946	dm3.chrX	10,186,694 – 10,186,786	- - - - - - - -	19185	10,186,694 – 10,186,786	+	3	95	91.52	-1.51	0.90	0.707711
13947	dm3.chrX	10,200,965 – 10,201,074	- - - - - - - -	19186	10,200,965 – 10,201,074	+	6	115	70.95	-2.03	0.35	0.745712
13948	dm3.chrX	10,206,697 – 10,206,790	- - - - - - - -	19187	10,206,697 – 10,206,790	+	7	115	66.56	-2.86	0.32	0.978895
13949	dm3.chrX	10,228,329 – 10,228,427	- - - - - - - -	19188	10,228,329 – 10,228,427	+	4	110	68.47	-1.66	0.44	0.541949
13950	dm3.chrX	10,228,879 – 10,229,000	- - - - - - - -	19189	10,228,879 – 10,228,975	+	3	101	87.46	-3.02	0.92	0.996178
				19190	10,228,879 – 10,228,975	-	3	101	87.46	-1.65	0.87	0.798513
				19191	10,228,897 – 10,229,000	+	5	105	80.15	-1.46	0.68	0.638941
				19192	10,228,897 – 10,229,000	-	5	105	80.15	-1.99	0.77	0.967010
13951	dm3.chrX	10,230,731 – 10,230,829	- - - intron="intron;ID=intron_FBgn0030192:1_FBgn0030192:2;Name=CG15307-in;Parent=FBtr0071442;parent_type=mRNA" - - - -	19193	10,230,731 – 10,230,829	-	4	104	76.99	-1.50	0.70	0.704372
13952	dm3.chrX	10,230,937 – 10,231,057	- - - intron="intron;ID=intron_FBgn0030192:1_FBgn0030192:2;Name=CG15307-in;Parent=FBtr0071442;parent_type=mRNA" - - - -	19194	10,230,937 – 10,231,057	+	5	120	90.52	-1.53	0.86	0.670510
13953	dm3.chrX	10,233,644 – 10,233,743	- - - intron="intron;ID=intron_FBgn0030192:1_FBgn0030192:2;Name=CG15307-in;Parent=FBtr0071442;parent_type=mRNA" - - - -	19195	10,233,644 – 10,233,743	+	5	115	65.33	-0.39	0.61	0.568523
13954	dm3.chrX	10,239,962 – 10,240,099	- - - intron="intron;ID=intron_FBgn0030192:2_FBgn0030192:3;Name=CG15307-in;Parent=FBtr0071442;parent_type=mRNA" - - - -	19196	10,239,962 – 10,240,099	+	4	137	96.59	-1.51	0.98	0.885399
13955	dm3.chrX	10,255,154 – 10,255,258	- - - intron="intron;ID=intron_CG2221:1_CG2221:2;Name=l(1)G0289-in;Parent=FBtr0071470;parent_type=mRNA" - - - -	19197	10,255,154 – 10,255,258	-	5	105	94.94	-2.23	0.78	0.671678
13956	dm3.chrX	10,258,167 – 10,258,278	- - - intron="intron;ID=intron_CG2221:1_CG2221:2;Name=l(1)G0289-in;Parent=FBtr0071470;parent_type=mRNA" - - - -	19198	10,258,167 – 10,258,278	-	5	118	83.48	-1.55	0.75	0.651144
13957	dm3.chrX	10,262,518 – 10,262,616	- - CDS="CDS;ID=CDS_CG17841:1_909;Name=CG17841-cds;Parent=FBtr0071444;parent_type=mRNA" - - - - -	19199	10,262,518 – 10,262,616	+	13	119	71.36	-0.54	0.62	0.592040
13958	dm3.chrX	10,262,937 – 10,263,034	- - - intron="intron;ID=intron_CG17841:1_CG17841:2;Name=CG17841-in;Parent=FBtr0071444;parent_type=mRNA" - - - -	19200	10,262,937 – 10,263,034	-	5	120	77.59	-1.67	0.73	0.876874
13959	dm3.chrX	10,271,746 – 10,271,843	- - CDS="CDS;ID=CDS_CG32681:1_900;Name=CG32681-cds;Parent=FBtr0071466;parent_type=mRNA" - - - - -	19201	10,271,746 – 10,271,843	+	6	120	74.01	-1.47	0.53	0.523269
13960	dm3.chrX	10,274,410 – 10,274,588	- - CDS="CDS;ID=CDS_CG32681:1_900;Name=CG32681-cds;Parent=FBtr0071466;parent_type=mRNA" - - - - -	19202	10,274,410 – 10,274,588	+	12	188	70.42	-2.77	0.23	0.906432
13960	dm3.chrX	10,274,410 – 10,274,588		19203	10,274,410 – 10,274,588	-	12	188	70.42	-3.01	0.28	0.986256
13961	dm3.chrX	10,279,896 – 10,280,102	- - - - - - - -	19204	10,279,896 – 10,280,015	-	5	120	83.16	-1.65	0.71	0.608587
13961	dm3.chrX	10,279,896 – 10,280,102	- - - - - - - -	19205	10,280,015 – 10,280,102	-	5	87	97.24	-1.93	1.00	0.971530
13962	dm3.chrX	10,280,983 – 10,281,085	- - - intron="intron;ID=intron_CG2096:1_CG2096:2;Name=flw-in;Parent=FBtr0071446;parent_type=mRNA" - - - -	19206	10,280,983 – 10,281,085	+	6	105	77.28	-2.06	0.40	0.542228
13963	dm3.chrX	10,282,000 – 10,282,062	- - - intron="intron;ID=intron_CG2096:1_CG2096:2;Name=flw-in;Parent=FBtr0071446;parent_type=mRNA" - - - -	19207	10,282,000 – 10,282,062	-	5	62	86.27	-1.18	0.89	0.671142
13964	dm3.chrX	10,293,481 – 10,293,611	- - - intron="intron;ID=intron_CG2096:2_CG2096:3;Name=flw-in;Parent=FBtr0071446;parent_type=mRNA" - - - -	19208	10,293,481 – 10,293,587	+	3	110	82.05	-2.29	0.71	0.876459
				19209	10,293,514 – 10,293,611	+	3	100	82.98	-1.30	0.90	0.768859
				19210	10,293,514 – 10,293,611	-	3	100	82.98	-1.57	0.78	0.550038
13965	dm3.chrX	10,295,377 – 10,295,428	- - - intron="intron;ID=intron_CG2096:2_CG2096:3;Name=flw-in;Parent=FBtr0071446;parent_type=mRNA" - - - -	19211	10,295,377 – 10,295,428	-	5	52	95.33	-0.90	1.00	0.694662
13966	dm3.chrX	10,304,036 – 10,304,176	- - - - - - - -	19212	10,304,036 – 10,304,176	-	5	165	74.80	-1.78	0.54	0.685990
13967	dm3.chrX	10,317,467 – 10,317,559	- - - intron="intron;ID=intron_CG32683:5_CG32683:6;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19213	10,317,467 – 10,317,559	+	5	118	48.96	-1.56	0.26	0.659218
13968	dm3.chrX	10,318,053 – 10,318,156	- - - intron="intron;ID=intron_CG32683:5_CG32683:6;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19214	10,318,053 – 10,318,156	-	3	120	82.50	-1.82	0.77	0.782000
13969	dm3.chrX	10,322,730 – 10,322,792	- - - intron="intron;ID=intron_CG32683:2_CG32683:3;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19215	10,322,730 – 10,322,792	+	5	67	55.21	-1.60	0.37	0.949090
13969	dm3.chrX	10,322,730 – 10,322,792		19216	10,322,730 – 10,322,792	-	5	67	55.21	-1.20	0.33	0.598849
13970	dm3.chrX	10,324,937 – 10,325,040	- - - intron="intron;ID=intron_CG32683:2_CG32683:3;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19217	10,324,937 – 10,325,040	-	5	105	69.47	-1.25	0.46	0.508875
13971	dm3.chrX	10,336,309 – 10,336,417	- - - intron="intron;ID=intron_CG32683:2_CG32683:3;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19218	10,336,309 – 10,336,417	+	5	110	89.28	-3.20	0.58	0.934091
13972	dm3.chrX	10,336,735 – 10,336,873	- - - intron="intron;ID=intron_CG32683:2_CG32683:3;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19219	10,336,735 – 10,336,873	+	4	148	86.73	-1.80	0.74	0.554548
13973	dm3.chrX	10,337,843 – 10,337,937	- - - intron="intron;ID=intron_CG32683:2_CG32683:3;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19220	10,337,843 – 10,337,937	+	5	115	60.50	-1.12	0.47	0.834242
13973	dm3.chrX	10,337,843 – 10,337,937		19221	10,337,843 – 10,337,937	-	5	115	60.50	-0.42	0.62	0.776378
13974	dm3.chrX	10,339,530 – 10,339,614	- - - intron="intron;ID=intron_CG32683:2_CG32683:3;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19222	10,339,530 – 10,339,614	+	5	90	71.99	-0.77	0.65	0.562294
13975	dm3.chrX	10,341,960 – 10,342,051	- - - intron="intron;ID=intron_CG32683:2_CG32683:3;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19223	10,341,960 – 10,342,051	+	3	91	82.05	-2.27	0.61	0.679221
13976	dm3.chrX	10,342,943 – 10,343,050	- - - intron="intron;ID=intron_CG32683:2_CG32683:3;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19224	10,342,943 – 10,343,050	-	4	109	80.00	-2.83	0.69	0.990188
13977	dm3.chrX	10,347,372 – 10,347,483	- - - intron="intron;ID=intron_CG32683:1_CG32683:2;Name=CG32683-in;Parent=FBtr0071463;parent_type=mRNA" - - - -	19225	10,347,372 – 10,347,483	+	3	111	92.77	-2.19	0.77	0.645787
13978	dm3.chrX	10,350,493 – 10,350,590	- - - - - - - -	19226	10,350,493 – 10,350,590	-	3	97	81.63	-2.34	0.74	0.940081
13979	dm3.chrX	10,360,421 – 10,360,516	- - CDS="CDS;ID=CDS_FBgn0030205:3_1005;Name=nocte-cds;Parent=FBtr0071460,FBtr0071461;parent_type=mRNA" - - - - -	19227	10,360,421 – 10,360,516	-	13	115	73.95	-1.84	0.36	0.559403
13980	dm3.chrX	10,381,032 – 10,381,143	- - - - - - - -	19228	10,381,032 – 10,381,143	-	5	112	84.80	-2.67	0.74	0.982114
13981	dm3.chrX	10,387,742 – 10,387,837	- - - - - - - -	19229	10,387,742 – 10,387,837	+	6	107	82.54	-2.12	0.57	0.629632
13982	dm3.chrX	10,388,053 – 10,388,163	- - - - - - - -	19230	10,388,053 – 10,388,163	-	6	131	49.29	-1.47	0.26	0.752339
13983	dm3.chrX	10,388,524 – 10,388,630	- - - - - - - -	19231	10,388,524 – 10,388,630	+	4	115	72.38	-1.30	0.64	0.698037
13984	dm3.chrX	10,400,076 – 10,400,176	- - - intron="intron;ID=intron_FBgn0085443:9_FBgn0085443:8;Name=spri-in;Parent=FBtr0112688,FBtr0112689;parent_type=mRNA" - - - -	19232	10,400,076 – 10,400,176	-	3	117	52.40	-1.79	0.30	0.630396
13985	dm3.chrX	10,413,028 – 10,413,153	- - - intron="intron;ID=intron_FBgn0085443:11_FBgn0085443:9;Name=spri-in;Parent=FBtr0112688,FBtr0112689;parent_type=mRNA" - - - -	19233	10,413,028 – 10,413,153	+	6	136	73.11	-2.14	0.49	0.964597
13985	dm3.chrX	10,413,028 – 10,413,153		19234	10,413,028 – 10,413,153	-	6	136	73.11	-2.71	0.45	0.990346
13986	dm3.chrX	10,427,755 – 10,427,828	- - - intron="intron;ID=intron_FBgn0085443:13_FBgn0085443:12;Name=spri-in;Parent=FBtr0112689;parent_type=mRNA" - - - -	19235	10,427,755 – 10,427,828	-	8	76	66.83	-1.70	0.38	0.880943
13987	dm3.chrX	10,431,129 – 10,431,274	- - - intron="intron;ID=intron_FBgn0085443:13_FBgn0085443:12;Name=spri-in;Parent=FBtr0112689;parent_type=mRNA" - - - -	19236	10,431,129 – 10,431,249	-	5	120	88.85	-1.54	0.83	0.640107
13987	dm3.chrX	10,431,129 – 10,431,274		19237	10,431,154 – 10,431,274	-	5	120	85.13	-1.95	0.84	0.942729
13988	dm3.chrX	10,431,446 – 10,431,578	- - - intron="intron;ID=intron_FBgn0085443:13_FBgn0085443:12;Name=spri-in;Parent=FBtr0112689;parent_type=mRNA" - - - -	19238	10,431,446 – 10,431,565	-	4	120	75.56	-2.54	0.63	0.988430
				19239	10,431,459 – 10,431,578	+	4	120	73.16	-2.24	0.43	0.768312
				19240	10,431,459 – 10,431,578	-	4	120	73.16	-1.88	0.49	0.701828
13989	dm3.chrX	10,432,522 – 10,432,711	- - - intron="intron;ID=intron_FBgn0085443:13_FBgn0085443:12;Name=spri-in;Parent=FBtr0112689;parent_type=mRNA" - - - -	19241	10,432,522 – 10,432,632	+	5	116	86.54	-2.83	0.73	0.980173
13989	dm3.chrX	10,432,522 – 10,432,711		19242	10,432,602 – 10,432,711	+	4	111	70.11	-1.14	0.68	0.781528
13990	dm3.chrX	10,434,613 – 10,434,704	- - - intron="intron;ID=intron_FBgn0085443:13_FBgn0085443:12;Name=spri-in;Parent=FBtr0112689;parent_type=mRNA" - - - -	19243	10,434,613 – 10,434,704	-	5	96	82.49	-2.07	0.66	0.834463
13991	dm3.chrX	10,447,318 – 10,447,459	- - - - - - - -	19244	10,447,318 – 10,447,424	+	6	118	68.53	-2.17	0.44	0.971403
				19245	10,447,318 – 10,447,424	-	6	118	68.53	-1.32	0.51	0.832348
				19246	10,447,346 – 10,447,459	+	6	115	82.29	-1.81	0.61	0.668859
13992	dm3.chrX	10,452,630 – 10,452,703	- - - - - - - -	19247	10,452,630 – 10,452,703	-	5	73	89.65	-2.76	0.65	0.870025
13993	dm3.chrX	10,457,082 – 10,457,225	- - - - - - - -	19248	10,457,082 – 10,457,188	-	6	113	83.19	-2.23	0.77	0.972804
13993	dm3.chrX	10,457,082 – 10,457,225	- - - - - - - -	19249	10,457,114 – 10,457,225	-	6	114	76.30	-1.46	0.61	0.802339
13994	dm3.chrX	10,460,474 – 10,460,544	- - - - - - - -	19250	10,460,474 – 10,460,544	-	9	75	59.61	-0.55	0.39	0.564412
13995	dm3.chrX	10,465,491 – 10,465,625	- - - - - - - -	19251	10,465,491 – 10,465,625	+	5	142	83.95	-2.25	0.66	0.886090
13995	dm3.chrX	10,465,491 – 10,465,625	- - - - - - - -	19252	10,465,491 – 10,465,625	-	5	142	83.95	-2.37	0.63	0.890020
13996	dm3.chrX	10,473,752 – 10,473,843	- - - intron="intron;ID=intron_FBgn0085443:17_FBgn0085443:16;Name=spri-in;Parent=FBtr0112688;parent_type=mRNA" - - - -	19253	10,473,752 – 10,473,843	+	5	110	83.98	-1.78	0.87	0.936074
13997	dm3.chrX	10,480,882 – 10,480,983	- - - - - - - -	19254	10,480,882 – 10,480,983	-	5	115	83.24	-1.36	0.80	0.627531
13998	dm3.chrX	10,495,307 – 10,495,427	- - CDS="CDS;ID=CDS_CG1628:2_896;Name=CG1628-cds;Parent=FBtr0071510;parent_type=mRNA" - - - - -	19255	10,495,307 – 10,495,427	-	15	120	74.02	-1.52	0.36	0.514779
13999	dm3.chrX	10,495,795 – 10,495,885	- - - intron="intron;ID=intron_CG1628:1_CG1628:2;Name=CG1628-in;Parent=FBtr0071510;parent_type=mRNA" - - - -	19256	10,495,795 – 10,495,885	-	5	95	82.18	-2.70	0.75	0.990372
14000	dm3.chrX	10,523,161 – 10,523,257	- - - - - - - -	19257	10,523,161 – 10,523,257	-	6	110	68.79	-2.06	0.39	0.893484
14001	dm3.chrX	10,534,386 – 10,534,501	- - - intron="intron;ID=intron_FBgn0052677:2_FBgn0052677:3;Name=X11Lbeta-in;Parent=FBtr0071493;parent_type=mRNA" - - - -	19258	10,534,386 – 10,534,501	-	5	116	88.50	-1.60	0.87	0.827919
14002	dm3.chrX	10,535,464 – 10,535,599	- - - intron="intron;ID=intron_FBgn0052677:2_FBgn0052677:3;Name=X11Lbeta-in;Parent=FBtr0071493;parent_type=mRNA" - - - -	19259	10,535,464 – 10,535,566	+	7	121	58.66	-0.92	0.37	0.613910
				19260	10,535,464 – 10,535,566	-	7	121	58.66	-0.88	0.39	0.685757
				19261	10,535,502 – 10,535,594	+	7	111	57.95	-0.86	0.48	0.933528
				19262	10,535,502 – 10,535,594	-	7	111	57.95	-1.10	0.42	0.915552
				19263	10,535,508 – 10,535,599	+	7	111	58.40	-0.82	0.46	0.864553
				19264	10,535,508 – 10,535,599	-	7	111	58.40	-0.92	0.42	0.804732
14003	dm3.chrX	10,541,327 – 10,541,381	- - - intron="intron;ID=intron_FBgn0052677:2_FBgn0052677:3;Name=X11Lbeta-in;Parent=FBtr0071493;parent_type=mRNA" - - - -	19265	10,541,327 – 10,541,381	+	7	58	73.75	-1.60	0.67	0.978256
14004	dm3.chrX	10,548,577 – 10,548,679	- - - intron="intron;ID=intron_FBgn0052677:2_FBgn0052677:3;Name=X11Lbeta-in;Parent=FBtr0071493;parent_type=mRNA" - - - -	19266	10,548,577 – 10,548,679	-	7	104	81.16	-1.80	0.57	0.531362
14005	dm3.chrX	10,558,539 – 10,558,610	- - - - - - - -	19267	10,558,539 – 10,558,610	-	5	71	84.38	-1.83	0.65	0.529961
14006	dm3.chrX	10,567,429 – 10,567,489	- - - - - - - -	19268	10,567,429 – 10,567,489	-	5	67	63.28	-1.00	0.65	0.954994
14007	dm3.chrX	10,568,282 – 10,568,373	- - - - - - - -	19269	10,568,282 – 10,568,373	+	7	110	63.34	-2.33	0.33	0.973434
14007	dm3.chrX	10,568,282 – 10,568,373	- - - - - - - -	19270	10,568,282 – 10,568,373	-	7	110	63.34	-2.04	0.40	0.983234
14008	dm3.chrX	10,575,837 – 10,575,954	- - - intron="intron;ID=intron_FBgn0052677:3_FBgn0052677:4;Name=X11Lbeta-in;Parent=FBtr0071493;parent_type=mRNA" - - - -	19271	10,575,837 – 10,575,954	-	5	120	78.16	-2.12	0.57	0.906551
14009	dm3.chrX	10,593,232 – 10,593,326	- - - - - - - -	19272	10,593,232 – 10,593,326	+	6	109	68.43	-0.28	0.65	0.556964
14010	dm3.chrX	10,598,769 – 10,598,842	- - CDS="CDS;ID=CDS_FBgn0052677:10_936;Name=X11Lbeta-cds;Parent=FBtr0071493;parent_type=mRNA" - - - - -	19273	10,598,769 – 10,598,842	+	12	74	73.38	-0.43	0.61	0.609421
14011	dm3.chrX	10,599,838 – 10,599,901	- - CDS="CDS;ID=CDS_FBgn0052677:10_936;Name=X11Lbeta-cds;Parent=FBtr0071493;parent_type=mRNA" - - - - -	19274	10,599,838 – 10,599,901	+	5	75	65.95	-1.54	0.53	0.948478
14012	dm3.chrX	10,612,175 – 10,612,336	- - - intron="intron;ID=intron_CG32676:2_CG32676:3;Name=CG32676-in;Parent=FBtr0071503;parent_type=mRNA" - - - -	19275	10,612,175 – 10,612,336	-	4	161	80.62	-2.40	0.65	0.940419
14013	dm3.chrX	10,638,699 – 10,638,802	- - - intron="intron;ID=intron_FBgn0003204:1_FBgn0003204:2;Name=ras-in;Parent=FBtr0071494,FBtr0071495;parent_type=mRNA" - - - -	19276	10,638,699 – 10,638,802	+	3	105	95.56	-0.93	0.99	0.626959
14014	dm3.chrX	10,638,999 – 10,639,112	- - - - - - - -	19277	10,638,999 – 10,639,112	+	6	114	71.12	-1.41	0.46	0.739441
14015	dm3.chrX	10,639,375 – 10,639,491	- - - - - - - -	19278	10,639,375 – 10,639,491	-	5	117	85.03	-1.89	0.78	0.861566
14016	dm3.chrX	10,641,230 – 10,641,297	- - - intron="intron;ID=intron_FBgn0003204:7_FBgn0003204:8;Name=ras-in;Parent=FBtr0071494,FBtr0071495,FBtr0071496;parent_type=mRNA" - - - -	19279	10,641,230 – 10,641,297	-	5	69	70.01	-2.26	0.49	0.981354
14017	dm3.chrX	10,642,390 – 10,642,539	- - - - - - - -	19280	10,642,390 – 10,642,506	-	5	119	87.20	-2.65	0.80	0.982770
14017	dm3.chrX	10,642,390 – 10,642,539	- - - - - - - -	19281	10,642,427 – 10,642,539	-	5	114	89.27	-1.72	0.79	0.608089
14018	dm3.chrX	10,644,642 – 10,644,784	- - - intron="intron;ID=intron_FBgn0030230:3_FBgn0030230:2;Name=Rph-in;Parent=FBtr0071502,FBtr0301558;parent_type=mRNA" - - - -	19282	10,644,642 – 10,644,759	+	6	117	76.30	-1.26	0.63	0.766153
14018	dm3.chrX	10,644,642 – 10,644,784		19283	10,644,670 – 10,644,784	+	5	114	94.69	-1.27	0.95	0.715969
14019	dm3.chrX	10,646,422 – 10,646,474	- - - - - - - -	19284	10,646,422 – 10,646,474	-	5	52	100.00	-1.58	1.00	0.907217
14020	dm3.chrX	10,649,402 – 10,649,493	- - - intron="intron;ID=intron_FBgn0030230:7_FBgn0030230:6;Name=Rph-in;Parent=FBtr0071502,FBtr0301558;parent_type=mRNA" - - - -	19285	10,649,402 – 10,649,493	-	5	100	75.81	-1.32	0.61	0.530829
14021	dm3.chrX	10,657,571 – 10,657,626	- - - intron="intron;ID=intron_FBgn0052675:7_FBgn0052675:5;Name=Tango5-in;Parent=FBtr0300569;parent_type=mRNA" - - - -	19286	10,657,571 – 10,657,626	+	6	55	52.80	-0.48	0.41	0.647223
14022	dm3.chrX	10,658,116 – 10,658,227	- - - - - - - -	19287	10,658,116 – 10,658,227	+	5	118	70.74	-1.32	0.55	0.792379
14023	dm3.chrX	10,691,231 – 10,691,324	- - CDS="CDS;ID=CDS_FBgn0030235:3_920;Name=Imp-cds;Parent=FBtr0073419;parent_type=mRNA" - - - - -	19288	10,691,231 – 10,691,324	+	7	99	63.16	-0.65	0.55	0.889880
14023	dm3.chrX	10,691,231 – 10,691,324		19289	10,691,231 – 10,691,324	-	7	99	63.16	-1.39	0.53	0.989158
14024	dm3.chrX	10,693,854 – 10,693,963	- - CDS="CDS;ID=CDS_FBgn0030235:8_1021;Name=Imp-cds;Parent=FBtr0305149,FBtr0305150;parent_type=mRNA" - - - - -	19290	10,693,854 – 10,693,963	-	14	116	79.31	-2.13	0.39	0.695916
14025	dm3.chrX	10,696,433 – 10,696,503	- - - intron="intron;ID=intron_FBgn0030235:9_FBgn0030235:8;Name=Imp-in;Parent=FBtr0305149;parent_type=mRNA" - - - -	19291	10,696,433 – 10,696,503	+	5	83	70.78	-1.08	0.67	0.867845
14026	dm3.chrX	10,697,447 – 10,697,519	- - - intron="intron;ID=intron_FBgn0030235:9_FBgn0030235:8;Name=Imp-in;Parent=FBtr0305149;parent_type=mRNA" - - - -	19292	10,697,447 – 10,697,519	+	5	89	77.46	-1.77	0.62	0.722495
14027	dm3.chrX	10,699,096 – 10,699,210	- - - intron="intron;ID=intron_FBgn0030235:9_FBgn0030235:8;Name=Imp-in;Parent=FBtr0305149;parent_type=mRNA" - - - -	19293	10,699,096 – 10,699,210	-	5	120	92.87	-1.47	0.90	0.696241
14028	dm3.chrX	10,701,518 – 10,701,579	- - - - - - - -	19294	10,701,518 – 10,701,579	-	6	61	75.74	-1.03	0.69	0.778342
14029	dm3.chrX	10,702,068 – 10,702,187	- - - - - - - -	19295	10,702,068 – 10,702,169	-	5	119	62.46	-0.99	0.47	0.771079
14029	dm3.chrX	10,702,068 – 10,702,187	- - - - - - - -	19296	10,702,092 – 10,702,187	-	5	119	79.35	-1.64	0.70	0.728369
14030	dm3.chrX	10,706,805 – 10,706,964	- - - - - - - -	19297	10,706,805 – 10,706,964	+	3	162	69.43	-1.95	0.52	0.724194
14030	dm3.chrX	10,706,805 – 10,706,964	- - - - - - - -	19298	10,706,805 – 10,706,964	-	3	162	69.43	-1.25	0.68	0.629731
14031	dm3.chrX	10,711,517 – 10,711,568	- - - - - - - -	19299	10,711,517 – 10,711,568	-	6	66	75.48	-1.23	0.74	0.780578
14032	dm3.chrX	10,718,864 – 10,718,956	- - - - - - - -	19300	10,718,864 – 10,718,956	-	3	102	75.51	-1.36	0.74	0.639420
14033	dm3.chrX	10,719,194 – 10,719,294	- - - - - - - -	19301	10,719,194 – 10,719,294	+	5	105	71.57	-2.08	0.56	0.976408
14034	dm3.chrX	10,719,327 – 10,719,447	- - - - - - - -	19302	10,719,327 – 10,719,425	+	4	106	71.06	-2.45	0.33	0.690481
14034	dm3.chrX	10,719,327 – 10,719,447	- - - - - - - -	19303	10,719,356 – 10,719,447	+	5	105	74.24	-2.43	0.54	0.979576
14035	dm3.chrX	10,731,957 – 10,732,019	- - - intron="intron;ID=intron_FBgn0003321:8_FBgn0003321:7;Name=sbr-in;Parent=FBtr0073411;parent_type=mRNA" - - - -	19304	10,731,957 – 10,732,019	+	5	64	68.85	-1.69	0.50	0.924434
14036	dm3.chrX	10,739,308 – 10,739,403	- - - - - - - -	19305	10,739,308 – 10,739,403	-	5	99	83.85	-1.81	0.68	0.634158
14037	dm3.chrX	10,747,390 – 10,747,448	- - CDS="CDS;ID=CDS_CG11207:1_899;Name=feo-cds;Parent=FBtr0073410;parent_type=mRNA" - - - - -	19306	10,747,390 – 10,747,448	+	10	58	74.02	-0.63	0.60	0.711211
14038	dm3.chrX	10,752,461 – 10,752,584	- - CDS="CDS;ID=CDS_CG2186:3_893;Name=CG2186-cds;Parent=FBtr0073381;parent_type=mRNA" - - - - -	19307	10,752,461 – 10,752,584	-	7	140	72.38	-1.88	0.46	0.901269
14039	dm3.chrX	10,758,599 – 10,758,691	- - - - - - - -	19308	10,758,599 – 10,758,691	-	6	102	87.25	-2.22	0.68	0.778967
14040	dm3.chrX	10,759,014 – 10,759,105	- - - - - - - -	19309	10,759,014 – 10,759,105	-	6	92	69.98	-1.62	0.42	0.702143
14041	dm3.chrX	10,760,181 – 10,760,286	- - - - - - - -	19310	10,760,181 – 10,760,286	+	7	111	90.05	-2.90	0.64	0.903461
14042	dm3.chrX	10,781,121 – 10,781,227	- - - intron="intron;ID=intron_FBgn0017561:7_FBgn0017561:6;Name=Ork1-in;Parent=FBtr0073404;parent_type=mRNA" - - - -	19311	10,781,121 – 10,781,227	-	4	110	65.71	-1.39	0.45	0.534972
14043	dm3.chrX	10,796,691 – 10,796,786	- - - - - - - -	19312	10,796,691 – 10,796,786	-	3	95	85.02	-1.22	0.88	0.576221
14044	dm3.chrX	10,798,510 – 10,798,617	- - - - - - - -	19313	10,798,510 – 10,798,617	+	3	110	85.23	-0.91	0.94	0.608985
14045	dm3.chrX	10,799,044 – 10,799,135	- - - - - - - -	19314	10,799,044 – 10,799,135	-	3	91	99.26	-1.54	0.95	0.744483
14046	dm3.chrX	10,804,930 – 10,805,033	- - - - - - - -	19315	10,804,930 – 10,805,033	+	12	114	84.41	-1.49	0.80	0.828166
14047	dm3.chrX	10,810,845 – 10,810,950	- - CDS="CDS;ID=CDS_FBgn0030249:7_950;Name=CG11203-cds;Parent=FBtr0112978;parent_type=mRNA" - - - - -	19316	10,810,845 – 10,810,950	+	13	109	74.50	-1.49	0.54	0.939769
14048	dm3.chrX	10,814,895 – 10,814,997	- - - - - - - -	19317	10,814,895 – 10,814,997	+	5	103	91.72	-1.31	0.89	0.574821
14049	dm3.chrX	10,821,595 – 10,821,694	- - CDS="CDS;ID=CDS_CG2145:1_896;Name=CG2145-cds;Parent=FBtr0073387;parent_type=mRNA" - - - - -	19318	10,821,595 – 10,821,694	+	10	109	68.31	-1.37	0.51	0.974093
14050	dm3.chrX	10,827,471 – 10,827,575	- - - - - - - -	19319	10,827,471 – 10,827,575	-	5	104	90.48	-1.88	0.75	0.515931
14051	dm3.chrX	10,827,719 – 10,827,816	- - - - - - - -	19320	10,827,719 – 10,827,816	+	5	108	82.15	-1.09	0.82	0.545240
14052	dm3.chrX	10,851,640 – 10,851,733	- - - intron="intron;ID=intron_FBgn0030252:3_FBgn0030252:4;Name=Myo10A-in;Parent=FBtr0273266,FBtr0273267;parent_type=mRNA" - - - -	19321	10,851,640 – 10,851,733	+	7	93	78.46	-2.40	0.45	0.825628
14052	dm3.chrX	10,851,640 – 10,851,733		19322	10,851,640 – 10,851,733	-	7	93	78.46	-2.00	0.51	0.734155
14053	dm3.chrX	10,852,092 – 10,852,279	- - - intron="intron;ID=intron_FBgn0030252:3_FBgn0030252:4;Name=Myo10A-in;Parent=FBtr0273266,FBtr0273267;parent_type=mRNA" - - - -	19323	10,852,092 – 10,852,188	-	5	97	95.53	-2.40	0.76	0.697273
14053	dm3.chrX	10,852,092 – 10,852,279		19324	10,852,188 – 10,852,279	-	5	105	80.53	-2.18	0.83	0.981055
14054	dm3.chrX	10,854,668 – 10,854,767	- - CDS="CDS;ID=CDS_FBgn0030252:4_941;Name=Myo10A-cds;Parent=FBtr0273266,FBtr0273267;parent_type=mRNA" - - - - -	19325	10,854,668 – 10,854,767	+	12	111	73.10	-1.59	0.46	0.912488
14054	dm3.chrX	10,854,668 – 10,854,767		19326	10,854,668 – 10,854,767	-	12	111	73.10	-0.74	0.53	0.566097
14055	dm3.chrX	10,862,156 – 10,862,293	- - - - - - - -	19327	10,862,156 – 10,862,259	+	5	119	85.28	-2.08	0.71	0.785895
14055	dm3.chrX	10,862,156 – 10,862,293	- - - - - - - -	19328	10,862,186 – 10,862,293	+	6	114	73.23	-1.67	0.52	0.889976
14056	dm3.chrX	10,872,569 – 10,872,629	- - - intron="intron;ID=intron_FBgn0259241:4_FBgn0259241:3;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19329	10,872,569 – 10,872,629	+	3	60	91.06	-1.43	0.87	0.517212
14057	dm3.chrX	10,876,661 – 10,876,822	- - - intron="intron;ID=intron_FBgn0259241:4_FBgn0259241:3;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19330	10,876,661 – 10,876,822	+	3	161	87.47	-1.84	0.86	0.857681
14058	dm3.chrX	10,881,475 – 10,881,596	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19331	10,881,475 – 10,881,589	+	6	120	82.99	-2.12	0.70	0.930480
				19332	10,881,475 – 10,881,589	-	6	120	82.99	-1.40	0.73	0.595065
				19333	10,881,496 – 10,881,596	+	5	101	95.02	-1.86	0.90	0.850289
				19334	10,881,496 – 10,881,596	-	5	101	95.02	-1.32	0.93	0.648058
14059	dm3.chrX	10,898,157 – 10,898,215	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19335	10,898,157 – 10,898,215	-	5	58	92.59	-0.94	0.95	0.540234
14060	dm3.chrX	10,904,225 – 10,904,317	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19336	10,904,225 – 10,904,317	+	10	103	67.52	-1.13	0.53	0.958887
14060	dm3.chrX	10,904,225 – 10,904,317		19337	10,904,225 – 10,904,317	-	10	103	67.52	-1.20	0.44	0.863712
14061	dm3.chrX	10,904,442 – 10,904,493	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19338	10,904,442 – 10,904,493	-	3	51	97.39	-2.99	0.96	0.993821
14062	dm3.chrX	10,915,366 – 10,915,458	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19339	10,915,366 – 10,915,458	-	3	92	94.93	-1.58	0.93	0.785072
14063	dm3.chrX	10,915,486 – 10,915,594	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19340	10,915,486 – 10,915,594	+	5	108	97.59	-1.63	0.92	0.725641
14063	dm3.chrX	10,915,486 – 10,915,594		19341	10,915,486 – 10,915,594	-	5	108	97.59	-1.99	0.98	0.962614
14064	dm3.chrX	10,922,478 – 10,922,589	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19342	10,922,478 – 10,922,589	+	5	112	92.46	-1.64	0.83	0.522033
14065	dm3.chrX	10,923,128 – 10,923,228	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19343	10,923,128 – 10,923,228	-	3	102	88.89	-1.96	0.80	0.731287
14066	dm3.chrX	10,926,656 – 10,926,725	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19344	10,926,656 – 10,926,725	+	4	70	57.35	-0.36	0.63	0.877883
14066	dm3.chrX	10,926,656 – 10,926,725		19345	10,926,656 – 10,926,725	-	4	70	57.35	-0.17	0.62	0.758976
14067	dm3.chrX	10,929,559 – 10,929,625	- - - intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19346	10,929,559 – 10,929,625	+	9	68	81.69	-1.68	0.72	0.904942
14068	dm3.chrX	10,930,166 – 10,930,217	- - CDS="CDS;ID=CDS_FBgn0259241:5_961;Name=CG42339-cds;Parent=FBtr0299861;parent_type=mRNA" intron="intron;ID=intron_FBgn0259241:6_FBgn0259241:4;Name=CG42339-in;Parent=FBtr0299862;parent_type=mRNA" - - - -	19347	10,930,166 – 10,930,217	+	5	51	95.69	-1.88	1.01	0.977640
14069	dm3.chrX	10,936,801 – 10,936,917	- - - - - - - -	19348	10,936,801 – 10,936,917	+	4	116	95.69	-1.05	0.95	0.500000
14070	dm3.chrX	10,937,336 – 10,937,430	- - - - - - - -	19349	10,937,336 – 10,937,430	+	5	96	71.40	-1.16	0.54	0.698694
14070	dm3.chrX	10,937,336 – 10,937,430	- - - - - - - -	19350	10,937,336 – 10,937,430	-	5	96	71.40	-1.53	0.61	0.958619
14071	dm3.chrX	10,939,737 – 10,939,886	- - - intron="intron;ID=intron_CG11160:1_CG11160:2;Name=CG11160-in;Parent=FBtr0073390,FBtr0073391;parent_type=mRNA" - - - -	19351	10,939,737 – 10,939,886	+	7	165	80.92	-3.18	0.59	0.995884
14071	dm3.chrX	10,939,737 – 10,939,886		19352	10,939,737 – 10,939,886	-	7	165	80.92	-2.68	0.45	0.886417
14072	dm3.chrX	10,942,020 – 10,942,127	- - CDS="CDS;ID=CDS_CG11160:2_911;Name=CG11160-cds;Parent=FBtr0073390,FBtr0073391;parent_type=mRNA" - - - - -	19353	10,942,020 – 10,942,127	+	14	110	72.49	-3.22	0.33	0.997843
14072	dm3.chrX	10,942,020 – 10,942,127		19354	10,942,020 – 10,942,127	-	14	110	72.49	-2.49	0.38	0.992137
14073	dm3.chrX	10,942,335 – 10,942,482	- - - intron="intron;ID=intron_CG11160:2_CG11160:6;Name=CG11160-in;Parent=FBtr0073391;parent_type=mRNA" - - - -	19355	10,942,335 – 10,942,482	-	5	147	69.73	-1.71	0.46	0.736925
14074	dm3.chrX	10,944,294 – 10,944,385	- - - - - - - -	19356	10,944,294 – 10,944,385	-	6	107	77.44	-1.02	0.75	0.678308
14075	dm3.chrX	10,948,421 – 10,948,534	- - - - - - - -	19357	10,948,421 – 10,948,534	+	5	113	95.74	-1.40	0.94	0.724063
14076	dm3.chrX	10,950,864 – 10,950,962	- - - - - - - -	19358	10,950,864 – 10,950,962	-	3	103	94.08	-1.36	0.93	0.660648
14077	dm3.chrX	10,958,794 – 10,958,894	- - - - - - - -	19359	10,958,794 – 10,958,891	+	9	121	73.29	-1.39	0.53	0.649611
				19360	10,958,794 – 10,958,891	-	9	121	73.29	-1.50	0.50	0.634843
				19361	10,958,797 – 10,958,894	+	9	121	75.03	-1.17	0.62	0.649234
				19362	10,958,797 – 10,958,894	-	9	121	75.03	-1.56	0.52	0.656441
14078	dm3.chrX	10,980,616 – 10,980,713	- - - - - - - -	19363	10,980,616 – 10,980,713	-	3	97	85.61	-2.18	0.78	0.871949
14079	dm3.chrX	10,981,824 – 10,981,921	- - - - - - - -	19364	10,981,824 – 10,981,921	-	5	110	85.40	-2.40	0.67	0.870093
14080	dm3.chrX	10,982,381 – 10,982,486	- - - - - - - -	19365	10,982,381 – 10,982,486	+	5	105	74.35	-1.20	0.67	0.808829
14081	dm3.chrX	10,985,288 – 10,985,388	- - - - - - - -	19366	10,985,288 – 10,985,388	+	13	116	60.93	-1.01	0.37	0.722144
14082	dm3.chrX	11,014,736 – 11,014,835	- - CDS="CDS;ID=CDS_CG11122:2_907;Name=CG11122-cds;Parent=FBtr0073481;parent_type=mRNA" - - - - -	19367	11,014,736 – 11,014,835	-	6	99	67.19	-1.53	0.40	0.828794
14083	dm3.chrX	11,018,572 – 11,018,666	- - - - - - - -	19368	11,018,572 – 11,018,666	-	6	94	77.78	-1.82	0.59	0.853589
14084	dm3.chrX	11,039,759 – 11,039,879	- - CDS="CDS;ID=CDS_CG1404:3_904;Name=ran-cds;Parent=FBtr0073471,FBtr0073472;parent_type=mRNA" - - - - -	19369	11,039,759 – 11,039,879	-	15	120	84.44	-2.22	0.48	0.610571
14085	dm3.chrX	11,042,229 – 11,042,349	- - - intron="intron;ID=intron_CG1404:1_CG1404:2;Name=ran-in;Parent=FBtr0073471;parent_type=mRNA" - - - -	19370	11,042,229 – 11,042,349	-	5	120	80.00	-1.37	0.69	0.572475
14086	dm3.chrX	11,054,004 – 11,054,096	- - - - - - - -	19371	11,054,004 – 11,054,096	+	6	103	79.91	-2.23	0.72	0.979962
14087	dm3.chrX	11,055,307 – 11,055,443	- - - - - - - -	19372	11,055,307 – 11,055,403	+	13	101	66.65	-1.65	0.65	0.999198
				19373	11,055,307 – 11,055,403	-	13	101	66.65	-2.07	0.33	0.981068
				19374	11,055,327 – 11,055,443	+	14	121	78.35	-1.54	0.52	0.770552
				19375	11,055,327 – 11,055,443	-	14	121	78.35	-1.78	0.46	0.752287
14088	dm3.chrX	11,067,003 – 11,067,099	- - - - - - - -	19376	11,067,003 – 11,067,097	-	5	105	60.08	-0.90	0.44	0.634267
14088	dm3.chrX	11,067,003 – 11,067,099	- - - - - - - -	19377	11,067,005 – 11,067,099	+	4	94	74.82	-1.45	0.56	0.500000
14089	dm3.chrX	11,067,277 – 11,067,362	- - - - - - - -	19378	11,067,277 – 11,067,362	-	6	85	81.58	-2.27	0.87	0.991430
14090	dm3.chrX	11,076,378 – 11,076,474	- - - - - - - -	19379	11,076,378 – 11,076,474	+	12	110	78.12	-2.85	0.46	0.986972
14090	dm3.chrX	11,076,378 – 11,076,474	- - - - - - - -	19380	11,076,378 – 11,076,474	-	12	110	78.12	-2.18	0.45	0.859112
14091	dm3.chrX	11,099,515 – 11,099,617	- - - - - - - -	19381	11,099,515 – 11,099,617	+	5	120	78.54	-1.81	0.59	0.654896
14092	dm3.chrX	11,104,495 – 11,104,598	- - - - - - - -	19382	11,104,495 – 11,104,598	-	10	115	65.13	-1.30	0.38	0.829073
14093	dm3.chrX	11,104,815 – 11,104,909	- - - - - - - -	19383	11,104,815 – 11,104,909	+	9	114	61.86	-1.12	0.52	0.972125
14093	dm3.chrX	11,104,815 – 11,104,909	- - - - - - - -	19384	11,104,815 – 11,104,909	-	9	114	61.86	-0.71	0.45	0.666836
14094	dm3.chrX	11,108,859 – 11,108,958	- - - - - - - -	19385	11,108,859 – 11,108,958	+	5	109	63.05	-1.61	0.40	0.859826
14095	dm3.chrX	11,125,623 – 11,125,759	- - - intron="intron;ID=intron_FBgn0261569:5_FBgn0261569:4;Name=CG42683-in;Parent=FBtr0302838,FBtr0302839,FBtr0303042;parent_type=mRNA" - - - -	19386	11,125,623 – 11,125,759	+	6	145	76.44	-2.32	0.59	0.986251
14096	dm3.chrX	11,127,551 – 11,127,623	- - - intron="intron;ID=intron_FBgn0261569:6_FBgn0261569:5;Name=CG42683-in;Parent=FBtr0302838,FBtr0302839,FBtr0303042;parent_type=mRNA" - - - -	19387	11,127,551 – 11,127,623	-	6	76	57.90	-1.51	0.24	0.510545
14097	dm3.chrX	11,133,240 – 11,133,331	- - - intron="intron;ID=intron_FBgn0261569:7_FBgn0261569:6;Name=CG42683-in;Parent=FBtr0303042;parent_type=mRNA" - - - -	19388	11,133,240 – 11,133,331	+	7	115	62.58	-1.21	0.42	0.719293
14098	dm3.chrX	11,139,635 – 11,139,738	- - - intron="intron;ID=intron_FBgn0261569:7_FBgn0261569:6;Name=CG42683-in;Parent=FBtr0303042;parent_type=mRNA" - - - -	19389	11,139,635 – 11,139,738	-	6	118	56.06	-2.83	0.35	0.999260
14099	dm3.chrX	11,139,927 – 11,140,020	- - - intron="intron;ID=intron_FBgn0261569:7_FBgn0261569:6;Name=CG42683-in;Parent=FBtr0303042;parent_type=mRNA" - - - -	19390	11,139,927 – 11,140,020	+	6	115	64.29	-1.98	0.28	0.601231
14099	dm3.chrX	11,139,927 – 11,140,020		19391	11,139,927 – 11,140,020	-	6	115	64.29	-2.96	0.49	0.999553
14100	dm3.chrX	11,146,363 – 11,146,464	- - - - - - - -	19392	11,146,363 – 11,146,464	+	5	101	90.64	-2.03	0.87	0.920976
14100	dm3.chrX	11,146,363 – 11,146,464	- - - - - - - -	19393	11,146,363 – 11,146,464	-	5	101	90.64	-1.20	0.93	0.703066
14101	dm3.chrX	11,154,940 – 11,155,036	- - - - - - - -	19394	11,154,940 – 11,155,036	+	5	106	64.26	-1.92	0.34	0.801335
14101	dm3.chrX	11,154,940 – 11,155,036	- - - - - - - -	19395	11,154,940 – 11,155,036	-	5	106	64.26	-1.55	0.38	0.701121
14102	dm3.chrX	11,158,273 – 11,158,368	- - - - - - - -	19396	11,158,273 – 11,158,368	+	7	117	63.29	-1.06	0.58	0.934587
14102	dm3.chrX	11,158,273 – 11,158,368	- - - - - - - -	19397	11,158,273 – 11,158,368	-	7	117	63.29	-1.91	0.36	0.871146
14103	dm3.chrX	11,158,520 – 11,158,619	- - - - - - - -	19398	11,158,520 – 11,158,619	-	4	119	70.99	-1.81	0.56	0.895253
14104	dm3.chrX	11,160,733 – 11,160,921	- - - - - - - -	19399	11,160,733 – 11,160,847	+	5	117	66.10	-1.37	0.45	0.619477
				19400	11,160,733 – 11,160,847	-	5	117	66.10	-2.11	0.47	0.974332
				19401	11,160,808 – 11,160,921	-	5	113	68.99	-1.53	0.46	0.745600
14105	dm3.chrX	11,174,454 – 11,174,564	- - - - - - - -	19402	11,174,454 – 11,174,564	+	5	110	96.36	-0.92	0.97	0.509433
14106	dm3.chrX	11,180,333 – 11,180,481	- - - - - - - -	19403	11,180,333 – 11,180,442	+	4	115	84.12	-3.48	0.80	0.997870
				19404	11,180,333 – 11,180,442	-	4	115	84.12	-3.92	0.83	0.998971
				19405	11,180,368 – 11,180,481	+	6	120	64.68	-3.24	0.36	0.999071
				19406	11,180,368 – 11,180,481	-	6	120	64.68	-3.29	0.53	0.999901
14107	dm3.chrX	11,181,626 – 11,181,717	- - - - - - - -	19407	11,181,626 – 11,181,717	+	6	119	77.46	-2.26	0.43	0.566837
14108	dm3.chrX	11,183,703 – 11,183,795	- - - - - - - -	19408	11,183,703 – 11,183,795	+	5	96	87.21	-2.35	0.89	0.983057
14109	dm3.chrX	11,205,751 – 11,205,871	- - - - - - - -	19409	11,205,751 – 11,205,871	-	5	120	93.83	-1.59	0.88	0.663176
14110	dm3.chrX	11,242,296 – 11,242,398	- - CDS="CDS;ID=CDS_CG11756:1_918;Name=CG11756-cds;Parent=FBtr0073450;parent_type=mRNA" - - - - -	19410	11,242,296 – 11,242,398	-	5	120	74.47	-2.17	0.55	0.944878
14111	dm3.chrX	11,249,325 – 11,249,423	- - - - - - - -	19411	11,249,325 – 11,249,423	-	5	103	89.10	-2.00	0.72	0.565153
14112	dm3.chrX	11,261,746 – 11,261,837	- - - - - - - -	19412	11,261,746 – 11,261,837	+	5	120	69.73	-0.71	0.63	0.500000
14113	dm3.chrX	11,274,039 – 11,274,129	- - - intron="intron;ID=intron_FBgn0001624:8_FBgn0001624:9;Name=dlg1-in;Parent=FBtr0073483,FBtr0073490,FBtr0073488,FBtr0073492,FBtr0073484,FBtr0073491,FBtr0112813,FBtr0301288,FBtr0302114;parent_type=mRNA" - - - -	19413	11,274,039 – 11,274,129	+	5	90	84.13	-3.80	0.72	0.998664
14113	dm3.chrX	11,274,039 – 11,274,129		19414	11,274,039 – 11,274,129	-	5	90	84.13	-3.22	0.67	0.993487
14114	dm3.chrX	11,274,440 – 11,274,550	- - - intron="intron;ID=intron_FBgn0001624:8_FBgn0001624:9;Name=dlg1-in;Parent=FBtr0073483,FBtr0073490,FBtr0073488,FBtr0073492,FBtr0073484,FBtr0073491,FBtr0112813,FBtr0301288,FBtr0302114;parent_type=mRNA" - - - -	19415	11,274,440 – 11,274,535	+	5	112	82.96	-2.35	0.79	0.975455
14114	dm3.chrX	11,274,440 – 11,274,550		19416	11,274,448 – 11,274,550	+	5	112	84.20	-2.43	0.86	0.988051
14115	dm3.chrX	11,277,676 – 11,277,809	- - - intron="intron;ID=intron_FBgn0001624:10_FBgn0001624:12;Name=dlg1-in;Parent=FBtr0073488,FBtr0073484;parent_type=mRNA" - - - -	19417	11,277,676 – 11,277,809	+	3	137	81.77	-2.23	0.62	0.642737
14115	dm3.chrX	11,277,676 – 11,277,809		19418	11,277,676 – 11,277,809	-	3	137	81.77	-1.89	0.67	0.507747
14116	dm3.chrX	11,279,719 – 11,279,871	- - - intron="intron;ID=intron_FBgn0001624:10_FBgn0001624:12;Name=dlg1-in;Parent=FBtr0073488,FBtr0073484;parent_type=mRNA" - - - -	19419	11,279,719 – 11,279,838	+	4	119	95.80	-1.78	0.97	0.936733
14116	dm3.chrX	11,279,719 – 11,279,871		19420	11,279,759 – 11,279,871	+	4	112	92.55	-2.26	0.89	0.952187
14117	dm3.chrX	11,280,648 – 11,280,749	- - - intron="intron;ID=intron_FBgn0001624:10_FBgn0001624:12;Name=dlg1-in;Parent=FBtr0073488,FBtr0073484;parent_type=mRNA" - - - -	19421	11,280,648 – 11,280,749	-	4	102	84.27	-2.35	0.68	0.876933
14118	dm3.chrX	11,282,886 – 11,282,994	- - - - - - - -	19422	11,282,886 – 11,282,994	-	6	121	79.54	-1.93	0.57	0.728379
14119	dm3.chrX	11,290,638 – 11,290,784	- - - intron="intron;ID=intron_FBgn0001624:23_FBgn0001624:24;Name=dlg1-in;Parent=FBtr0073489,FBtr0073487,FBtr0073485,FBtr0073486,FBtr0301289;parent_type=mRNA" - - - -	19423	11,290,638 – 11,290,784	+	6	163	75.40	-2.41	0.67	0.994082
14120	dm3.chrX	11,290,938 – 11,291,088	- - - intron="intron;ID=intron_FBgn0001624:23_FBgn0001624:24;Name=dlg1-in;Parent=FBtr0073489,FBtr0073487,FBtr0073485,FBtr0073486,FBtr0301289;parent_type=mRNA" - - - -	19424	11,290,938 – 11,291,050	+	6	112	72.81	-3.78	0.40	0.999044
14120	dm3.chrX	11,290,938 – 11,291,088		19425	11,290,970 – 11,291,088	+	5	120	83.38	-2.65	0.74	0.981774
14121	dm3.chrX	11,298,005 – 11,298,070	- - - intron="intron;ID=intron_FBgn0001624:30_FBgn0001624:32;Name=dlg1-in;Parent=FBtr0112813;parent_type=mRNA" - - - -	19426	11,298,005 – 11,298,070	+	5	65	91.67	-1.70	0.81	0.524513
14122	dm3.chrX	11,304,955 – 11,305,126	- - CDS="CDS;ID=CDS_FBgn0030296:3_973;Name=CG15196-cds;Parent=FBtr0300849;parent_type=mRNA" - - - - -	19427	11,304,955 – 11,305,066	-	6	117	76.92	-1.11	0.67	0.583868
				19428	11,304,995 – 11,305,097	+	6	117	73.28	-1.83	0.64	0.967501
				19429	11,304,995 – 11,305,097	-	6	117	73.28	-1.81	0.62	0.957056
				19430	11,305,026 – 11,305,126	-	6	121	70.53	-1.39	0.59	0.888871
14123	dm3.chrX	11,317,136 – 11,317,233	- - - intron="intron;ID=intron_CG1743:1_CG1743:2;Name=Gs2-in;Parent=FBtr0073494;parent_type=mRNA" - - - -	19431	11,317,136 – 11,317,233	+	3	97	78.80	-2.84	0.92	0.996999
14123	dm3.chrX	11,317,136 – 11,317,233		19432	11,317,136 – 11,317,233	-	3	97	78.80	-1.53	0.73	0.586610
14124	dm3.chrX	11,341,288 – 11,341,390	- - - - - - - -	19433	11,341,288 – 11,341,390	+	6	112	80.57	-2.49	0.43	0.677396
14124	dm3.chrX	11,341,288 – 11,341,390	- - - - - - - -	19434	11,341,288 – 11,341,390	-	6	112	80.57	-1.62	0.62	0.585641
14125	dm3.chrX	11,344,538 – 11,344,638	- - - - - - - -	19435	11,344,538 – 11,344,638	+	4	105	80.33	-3.80	0.65	0.998522
14126	dm3.chrX	11,344,650 – 11,344,721	- - - - - - - -	19436	11,344,650 – 11,344,721	-	5	72	76.33	-1.66	0.58	0.797889
14127	dm3.chrX	11,345,549 – 11,345,599	- - - - - - - -	19437	11,345,549 – 11,345,599	+	3	50	98.67	-1.02	0.98	0.558399
14127	dm3.chrX	11,345,549 – 11,345,599	- - - - - - - -	19438	11,345,549 – 11,345,599	-	3	50	98.67	-1.67	0.97	0.880524
14128	dm3.chrX	11,349,105 – 11,349,156	- - CDS="CDS;ID=CDS_CG1745:1_938;Name=HP5-cds;Parent=FBtr0073499;parent_type=mRNA" - - - - -	19439	11,349,105 – 11,349,156	+	5	51	94.90	-1.33	0.92	0.609257
14129	dm3.chrX	11,350,948 – 11,350,999	- - CDS="CDS;ID=CDS_CG1745:3_938;Name=HP5-cds;Parent=FBtr0073499;parent_type=mRNA" - - - - -	19440	11,350,948 – 11,350,999	+	3	51	92.81	-1.37	0.92	0.666566
14129	dm3.chrX	11,350,948 – 11,350,999		19441	11,350,948 – 11,350,999	-	3	51	92.81	-2.67	0.85	0.966868
14130	dm3.chrX	11,358,219 – 11,358,269	- - - intron="intron;ID=intron_FBgn0262685:1_FBgn0262685:2;Name=CG43155-in;Parent=FBtr0305607;parent_type=mRNA" - - - -	19442	11,358,219 – 11,358,269	+	6	57	74.72	-1.51	0.98	0.979043
14131	dm3.chrX	11,359,023 – 11,359,091	- - - intron="intron;ID=intron_FBgn0262685:1_FBgn0262685:2;Name=CG43155-in;Parent=FBtr0305607;parent_type=mRNA" - - - -	19443	11,359,023 – 11,359,091	+	4	68	97.06	-2.40	0.95	0.977401
14132	dm3.chrX	11,386,995 – 11,387,210	- - - - - - - -	19444	11,386,995 – 11,387,115	+	5	120	65.53	-0.78	0.52	0.549327
				19445	11,387,035 – 11,387,155	+	5	120	81.57	-2.27	0.68	0.944600
				19446	11,387,035 – 11,387,155	-	5	120	81.57	-2.15	0.68	0.922111
				19447	11,387,090 – 11,387,210	-	5	120	87.92	-2.20	0.70	0.757238
14133	dm3.chrX	11,391,110 – 11,391,163	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19448	11,391,110 – 11,391,163	+	5	53	95.85	-1.33	1.02	0.925584
14134	dm3.chrX	11,395,987 – 11,396,104	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19449	11,395,987 – 11,396,104	+	3	118	83.57	-1.43	0.81	0.629452
14135	dm3.chrX	11,398,374 – 11,398,484	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19450	11,398,374 – 11,398,484	+	3	116	83.92	-2.54	0.78	0.967902
14135	dm3.chrX	11,398,374 – 11,398,484		19451	11,398,374 – 11,398,484	-	3	116	83.92	-2.64	0.70	0.939739
14136	dm3.chrX	11,401,917 – 11,402,034	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19452	11,401,917 – 11,402,034	+	4	117	86.15	-2.00	0.72	0.678752
14136	dm3.chrX	11,401,917 – 11,402,034		19453	11,401,917 – 11,402,034	-	4	117	86.15	-2.30	0.65	0.694823
14137	dm3.chrX	11,402,762 – 11,402,819	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19454	11,402,762 – 11,402,819	-	9	64	82.40	-1.36	0.78	0.796847
14138	dm3.chrX	11,406,484 – 11,406,575	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19455	11,406,484 – 11,406,575	+	6	91	76.04	-1.46	0.65	0.837482
14139	dm3.chrX	11,412,030 – 11,412,127	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19456	11,412,030 – 11,412,127	-	3	99	87.80	-1.63	0.89	0.837306
14140	dm3.chrX	11,420,456 – 11,420,519	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19457	11,420,456 – 11,420,519	+	3	63	81.28	-2.20	0.74	0.924296
14141	dm3.chrX	11,421,716 – 11,421,815	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19458	11,421,716 – 11,421,815	+	7	112	73.05	-3.34	0.33	0.981672
14141	dm3.chrX	11,421,716 – 11,421,815		19459	11,421,716 – 11,421,815	-	7	112	73.05	-3.20	0.32	0.964974
14142	dm3.chrX	11,438,287 – 11,438,401	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19460	11,438,287 – 11,438,401	+	4	115	85.04	-1.81	0.82	0.862923
14143	dm3.chrX	11,438,478 – 11,438,636	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19461	11,438,478 – 11,438,586	+	3	115	78.59	-1.46	0.92	0.931299
				19462	11,438,586 – 11,438,636	+	5	50	99.20	-2.24	1.00	0.982812
				19463	11,438,586 – 11,438,636	-	5	50	99.20	-1.21	0.99	0.743001
14144	dm3.chrX	11,443,614 – 11,443,778	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19464	11,443,614 – 11,443,778	-	5	183	62.70	-1.75	0.30	0.553749
14145	dm3.chrX	11,443,875 – 11,443,990	- - - intron="intron;ID=intron_FBgn0052666:3_FBgn0052666:4;Name=Drak-in;Parent=FBtr0073507,FBtr0073508,FBtr0301020,FBtr0301021;parent_type=mRNA" - - - -	19465	11,443,875 – 11,443,985	+	5	119	62.43	-1.95	0.38	0.931959
				19466	11,443,875 – 11,443,985	-	5	119	62.43	-1.35	0.43	0.795251
				19467	11,443,880 – 11,443,990	+	5	119	66.08	-1.52	0.40	0.511205
				19468	11,443,880 – 11,443,990	-	5	119	66.08	-1.92	0.41	0.861771
14146	dm3.chrX	11,454,839 – 11,454,974	- - - - - - - -	19469	11,454,839 – 11,454,955	+	6	121	68.41	-0.89	0.59	0.822691
				19470	11,454,839 – 11,454,955	-	6	121	68.41	-1.97	0.55	0.992376
				19471	11,454,854 – 11,454,974	-	6	120	74.41	-2.08	0.38	0.661857
14147	dm3.chrX	11,455,642 – 11,455,717	- - - - - - - -	19472	11,455,642 – 11,455,717	-	5	93	71.05	-0.53	0.77	0.566947
14148	dm3.chrX	11,461,253 – 11,461,373	- - CDS="CDS;ID=CDS_CG1554:2_893;Name=RpII215-cds;Parent=FBtr0073542;parent_type=mRNA" - - - - -	19473	11,461,253 – 11,461,373	-	15	120	85.68	-2.11	0.59	0.765969
14149	dm3.chrX	11,466,500 – 11,466,593	- - - - - - - -	19474	11,466,500 – 11,466,593	-	7	101	57.39	-1.89	0.23	0.816761
14150	dm3.chrX	11,473,823 – 11,473,895	FBnoncoding="ncRNA;ID=FBtr0073515;Name=roX2-RB;Parent=FBgn0019660;Dbxref=FlyBase_Annotation_IDs:CR32665-RB,REFSEQ:NR_002104;score_text=Weakly" - - - - "Noncode_2.0=n5303_u4666_U85981_roX\|3.0e-34" "unique_Noncode_2.0=u4666_roX\|2.6e-34" -	19475	11,473,823 – 11,473,895	+	7	79	62.97	-2.63	0.18	0.816256
14151	dm3.chrX	11,474,049 – 11,474,253	FBnoncoding="ncRNA;ID=FBtr0073515;Name=roX2-RB;Parent=FBgn0019660;Dbxref=FlyBase_Annotation_IDs:CR32665-RB,REFSEQ:NR_002104;score_text=Weakly" - - - - "Noncode_2.0=n5303_u4666_U85981_roX\|2e-112" "unique_Noncode_2.0=u4666_roX\|1e-112" -	19476	11,474,049 – 11,474,154	+	9	115	73.06	-3.29	0.50	0.999247
				19477	11,474,120 – 11,474,223	+	8	112	73.51	-2.20	0.36	0.749154
				19478	11,474,120 – 11,474,223	-	8	112	73.51	-2.33	0.29	0.508973
				19479	11,474,154 – 11,474,253	-	8	109	74.05	-2.37	0.33	0.690181
14152	dm3.chrX	11,494,958 – 11,495,072	- - - intron="intron;ID=intron_FBgn0030318:1_FBgn0030318:2;Name=rho-4-in;Parent=FBtr0073519;parent_type=mRNA" - - - -	19480	11,494,958 – 11,495,072	-	5	118	74.57	-2.27	0.53	0.948750
14153	dm3.chrX	11,496,154 – 11,496,251	- - - intron="intron;ID=intron_FBgn0030318:1_FBgn0030318:2;Name=rho-4-in;Parent=FBtr0073519;parent_type=mRNA" - - - -	19481	11,496,154 – 11,496,251	+	4	113	75.31	-2.45	0.55	0.957148
14154	dm3.chrX	11,503,695 – 11,503,785	- - - - - - - -	19482	11,503,695 – 11,503,785	-	6	118	69.24	-0.77	0.64	0.566706
14155	dm3.chrX	11,505,670 – 11,505,770	- - - - - - - -	19483	11,505,670 – 11,505,770	+	5	104	83.95	-2.43	0.61	0.870267
14156	dm3.chrX	11,511,797 – 11,511,914	- - CDS="CDS;ID=CDS_FBgn0002723:1_1005;Name=Met-cds;Parent=FBtr0073521;parent_type=mRNA" - - - - -	19484	11,511,797 – 11,511,914	-	9	118	68.23	-2.21	0.28	0.911201
14157	dm3.chrX	11,520,138 – 11,520,244	- - - intron="intron;ID=intron_FBgn0004370:5_FBgn0004370:6;Name=Ptp10D-in;Parent=FBtr0073522,FBtr0273235;parent_type=mRNA" - - - -	19485	11,520,138 – 11,520,244	+	5	107	93.40	-1.50	0.95	0.862331
14157	dm3.chrX	11,520,138 – 11,520,244		19486	11,520,138 – 11,520,244	-	5	107	93.40	-3.22	0.82	0.988941
14158	dm3.chrX	11,521,118 – 11,521,228	- - - intron="intron;ID=intron_FBgn0004370:5_FBgn0004370:6;Name=Ptp10D-in;Parent=FBtr0073522,FBtr0273235;parent_type=mRNA" - - - -	19487	11,521,118 – 11,521,228	+	5	116	58.12	-1.39	0.35	0.741779
14159	dm3.chrX	11,526,903 – 11,526,987	- - - intron="intron;ID=intron_FBgn0004370:5_FBgn0004370:6;Name=Ptp10D-in;Parent=FBtr0073522,FBtr0273235;parent_type=mRNA" - - - -	19488	11,526,903 – 11,526,987	-	5	91	80.91	-1.35	0.85	0.846028
14160	dm3.chrX	11,545,543 – 11,545,641	- - - intron="intron;ID=intron_FBgn0004370:5_FBgn0004370:6;Name=Ptp10D-in;Parent=FBtr0073522,FBtr0273235;parent_type=mRNA" - - - -	19489	11,545,543 – 11,545,641	-	4	111	75.73	-1.41	0.68	0.696124
14161	dm3.chrX	11,546,216 – 11,546,366	- - - intron="intron;ID=intron_FBgn0004370:5_FBgn0004370:6;Name=Ptp10D-in;Parent=FBtr0073522,FBtr0273235;parent_type=mRNA" - - - -	19490	11,546,216 – 11,546,327	-	6	118	82.53	-2.05	0.63	0.831393
14161	dm3.chrX	11,546,216 – 11,546,366		19491	11,546,256 – 11,546,366	+	6	120	81.23	-1.91	0.59	0.689696
14162	dm3.chrX	11,551,971 – 11,552,029	- - - intron="intron;ID=intron_FBgn0004370:5_FBgn0004370:6;Name=Ptp10D-in;Parent=FBtr0073522,FBtr0273235;parent_type=mRNA" - - - -	19492	11,551,971 – 11,552,029	+	4	58	85.34	-1.90	0.82	0.899173
14163	dm3.chrX	11,554,124 – 11,554,217	- - - intron="intron;ID=intron_FBgn0004370:5_FBgn0004370:6;Name=Ptp10D-in;Parent=FBtr0073522,FBtr0273235;parent_type=mRNA" - - - -	19493	11,554,124 – 11,554,217	-	4	93	94.62	-1.61	0.91	0.756477
14164	dm3.chrX	11,560,301 – 11,560,459	- - - intron="intron;ID=intron_FBgn0004370:6_FBgn0004370:7;Name=Ptp10D-in;Parent=FBtr0073525,FBtr0073522,FBtr0073524,FBtr0273235;parent_type=mRNA" - - - -	19494	11,560,301 – 11,560,407	-	6	113	72.43	-1.76	0.46	0.748542
				19495	11,560,335 – 11,560,443	+	6	116	70.59	-1.83	0.58	0.975455
				19496	11,560,335 – 11,560,443	-	6	116	70.59	-2.86	0.53	0.998244
				19497	11,560,368 – 11,560,459	+	5	100	76.11	-1.83	0.73	0.966289
				19498	11,560,368 – 11,560,459	-	5	100	76.11	-1.80	0.50	0.592259
14165	dm3.chrX	11,567,231 – 11,567,327	- - CDS="CDS;ID=CDS_FBgn0004370:13_941;Name=Ptp10D-cds;Parent=FBtr0073524,FBtr0273235;parent_type=mRNA" - - - - -	19499	11,567,231 – 11,567,327	-	12	98	76.12	-0.83	0.65	0.799529
14166	dm3.chrX	11,567,977 – 11,568,082	- - - intron="intron;ID=intron_FBgn0004370:15_FBgn0004370:17;Name=Ptp10D-in;Parent=FBtr0073525,FBtr0073524;parent_type=mRNA" - - - -	19500	11,567,977 – 11,568,082	+	12	119	72.55	-4.71	0.36	0.999867
14166	dm3.chrX	11,567,977 – 11,568,082		19501	11,567,977 – 11,568,082	-	12	119	72.55	-3.14	0.26	0.967274
14167	dm3.chrX	11,572,943 – 11,573,037	- - - - - - - -	19502	11,572,943 – 11,573,037	+	6	113	70.50	-1.18	0.54	0.626856
14167	dm3.chrX	11,572,943 – 11,573,037	- - - - - - - -	19503	11,572,943 – 11,573,037	-	6	113	70.50	-1.76	0.60	0.970329
14168	dm3.chrX	11,579,234 – 11,579,343	- - - intron="intron;ID=intron_CG1822:3_CG1822:4;Name=bif-in;Parent=FBtr0073526,FBtr0073527;parent_type=mRNA" - - - -	19504	11,579,234 – 11,579,343	-	3	109	89.60	-1.43	0.87	0.575014
14169	dm3.chrX	11,582,222 – 11,582,277	- - - intron="intron;ID=intron_CG1822:4_CG1822:5;Name=bif-in;Parent=FBtr0073526,FBtr0073527;parent_type=mRNA" - - - -	19505	11,582,222 – 11,582,277	-	5	55	85.56	-2.71	0.61	0.925524
14170	dm3.chrX	11,583,336 – 11,583,483	- - CDS="CDS;ID=CDS_CG1822:5_897;Name=bif-cds;Parent=FBtr0073526,FBtr0073527;parent_type=mRNA" - - - - -	19506	11,583,336 – 11,583,452	+	6	117	84.18	-1.93	0.71	0.862227
				19507	11,583,336 – 11,583,452	-	6	117	84.18	-1.99	0.75	0.925104
				19508	11,583,376 – 11,583,483	+	6	110	83.83	-1.64	0.67	0.574140
				19509	11,583,376 – 11,583,483	-	6	110	83.83	-2.21	0.71	0.943632
14171	dm3.chrX	11,591,843 – 11,591,934	- - - intron="intron;ID=intron_FBgn0011754:9_FBgn0011754:10;Name=PhKgamma-in;Parent=FBtr0090002,FBtr0301500,FBtr0301501;parent_type=mRNA" - - - -	19510	11,591,843 – 11,591,934	-	5	91	88.46	-3.10	0.79	0.992417
14172	dm3.chrX	11,596,444 – 11,596,584	- - - intron="intron;ID=intron_FBgn0011754:13_FBgn0011754:14;Name=PhKgamma-in;Parent=FBtr0301500,FBtr0301501;parent_type=mRNA" - - - -	19511	11,596,444 – 11,596,551	+	11	118	92.06	-3.30	0.67	0.973880
				19512	11,596,444 – 11,596,551	-	11	118	92.06	-1.93	0.81	0.762276
				19513	11,596,476 – 11,596,584	+	11	117	93.52	-1.66	0.90	0.827722
14173	dm3.chrX	11,608,916 – 11,609,054	- - - intron="intron;ID=intron_FBgn0030328:12_FBgn0030328:10;Name=Amun-in;Parent=FBtr0303338;parent_type=mRNA" - - - -	19514	11,608,916 – 11,609,028	-	5	114	92.02	-1.54	0.86	0.596146
14173	dm3.chrX	11,608,916 – 11,609,054		19515	11,608,950 – 11,609,054	-	5	106	94.27	-2.39	0.88	0.953701
14174	dm3.chrX	11,610,426 – 11,610,518	- - - - - - - -	19516	11,610,426 – 11,610,518	+	6	113	79.60	-1.91	0.68	0.888127
14175	dm3.chrX	11,617,522 – 11,617,616	- - - - - - - -	19517	11,617,522 – 11,617,616	-	4	105	63.50	-1.79	0.39	0.804597
14176	dm3.chrX	11,637,003 – 11,637,099	- - - - - - - -	19518	11,637,003 – 11,637,099	+	12	109	83.12	-1.96	0.60	0.781847
14177	dm3.chrX	11,650,271 – 11,650,367	- - - intron="intron;ID=intron_CG9369:2_CG9369:3;Name=m-in;Parent=FBtr0073555;parent_type=mRNA" - - - -	19519	11,650,271 – 11,650,367	+	12	109	83.12	-1.96	0.60	0.781847
14178	dm3.chrX	11,657,182 – 11,657,340	- - CDS="CDS;ID=CDS_CG9369:3_905;Name=m-cds;Parent=FBtr0073555;parent_type=mRNA" - - - - -	19520	11,657,182 – 11,657,340	+	11	175	73.93	-1.43	0.66	0.973976
14178	dm3.chrX	11,657,182 – 11,657,340		19521	11,657,182 – 11,657,340	-	11	175	73.93	-1.35	0.52	0.834399
14179	dm3.chrX	11,659,542 – 11,659,665	- - - - - - - -	19522	11,659,542 – 11,659,665	+	3	149	61.71	-1.26	0.69	0.947080
14179	dm3.chrX	11,659,542 – 11,659,665	- - - - - - - -	19523	11,659,542 – 11,659,665	-	3	149	61.71	-1.31	0.59	0.884610
14180	dm3.chrX	11,659,906 – 11,660,035	- - - - - - - -	19524	11,659,906 – 11,660,003	+	8	103	63.80	-0.92	0.42	0.732628
				19525	11,659,941 – 11,660,035	+	7	98	70.77	-1.53	0.65	0.979064
				19526	11,659,941 – 11,660,035	-	7	98	70.77	-1.47	0.41	0.500000
14181	dm3.chrX	11,682,943 – 11,683,040	- - CDS="CDS;ID=CDS_CG4139:1_909;Name=Karl-cds;Parent=FBtr0073556,FBtr0073557;parent_type=mRNA" - - - - -	19527	11,682,943 – 11,683,040	-	6	107	72.62	-1.49	0.48	0.655048
14182	dm3.chrX	11,686,487 – 11,686,600	- - - - - - - -	19528	11,686,487 – 11,686,600	+	5	113	84.42	-1.95	0.80	0.933705
14183	dm3.chrX	11,711,721 – 11,711,835	- - - - - - - -	19529	11,711,721 – 11,711,835	-	8	122	62.05	-1.07	0.34	0.500000
14184	dm3.chrX	11,716,989 – 11,717,117	- - - intron="intron;ID=intron_FBgn0262684:3_FBgn0262684:4;Name=CG43154-in;Parent=FBtr0305605;parent_type=mRNA" - - - -	19530	11,716,989 – 11,717,088	-	6	103	60.51	-0.49	0.46	0.630212
14184	dm3.chrX	11,716,989 – 11,717,117		19531	11,717,015 – 11,717,117	+	6	108	60.57	-0.56	0.44	0.516935
14185	dm3.chrX	11,731,975 – 11,732,094	- - - - - - - -	19532	11,731,975 – 11,732,094	+	3	125	70.43	-1.33	0.66	0.750029
14186	dm3.chrX	11,732,840 – 11,732,941	- - - - - - - -	19533	11,732,840 – 11,732,941	+	4	116	61.85	-1.21	0.50	0.829678
14187	dm3.chrX	11,751,167 – 11,751,313	- - - intron="intron;ID=intron_FBgn0030343:1_FBgn0030343:2;Name=ATP7-in;Parent=FBtr0273257;parent_type=mRNA" - - - -	19534	11,751,167 – 11,751,313	+	3	152	77.70	-1.74	0.67	0.571269
14188	dm3.chrX	11,771,222 – 11,771,358	- - - - - - - -	19535	11,771,222 – 11,771,358	+	4	136	79.80	-2.53	0.70	0.980224
14188	dm3.chrX	11,771,222 – 11,771,358	- - - - - - - -	19536	11,771,222 – 11,771,358	-	4	136	79.80	-4.08	0.73	0.999404
14189	dm3.chrX	11,780,919 – 11,781,011	- - - intron="intron;ID=intron_FBgn0030349:11_FBgn0030349:10;Name=CG10353-in;Parent=FBtr0114452;parent_type=mRNA" - - - -	19537	11,780,919 – 11,781,011	-	5	98	89.48	-1.89	0.81	0.781845
14190	dm3.chrX	11,781,194 – 11,781,248	- - - - - - - -	19538	11,781,194 – 11,781,248	-	5	56	71.72	-0.63	0.68	0.564927
14191	dm3.chrX	11,781,891 – 11,782,057	- - - - "Rfam_10.0=RF00031;SECIS;AAGH01001964.1/2115-2182\|2.7e-18" - - -	19539	11,781,891 – 11,781,995	+	12	122	50.59	-2.13	0.43	0.999598
				19540	11,781,891 – 11,781,995	-	12	122	50.59	-2.02	0.32	0.995759
				19541	11,781,995 – 11,782,057	+	10	71	69.47	-2.44	0.81	0.999174
				19542	11,781,995 – 11,782,057	-	10	71	69.47	-1.31	0.42	0.626749
14192	dm3.chrX	11,814,219 – 11,814,390	FBnoncoding="ncRNA;ID=FBtr0073592;Name=CR32660-RA;Parent=FBgn0052660;Dbxref=FlyBase_Annotation_IDs:CR32660-RA,REFSEQ:NR_002107;score_text=Weakly" - - - - - - -	19543	11,814,219 – 11,814,390	-	5	179	68.98	-2.31	0.56	0.995714
14193	dm3.chrX	11,814,842 – 11,814,941	- - - - - - - -	19544	11,814,842 – 11,814,941	-	3	99	93.94	-1.60	0.86	0.500000
14194	dm3.chrX	11,817,389 – 11,817,482	- - - - - - - -	19545	11,817,389 – 11,817,482	-	3	93	100.00	-1.11	1.00	0.709659
14195	dm3.chrX	11,830,272 – 11,830,365	- - CDS="CDS;ID=CDS_FBgn0005563:2_1021;Name=cac-cds;Parent=FBtr0100302,FBtr0304584,FBtr0304585;parent_type=mRNA" - - - - -	19546	11,830,272 – 11,830,365	-	10	108	73.66	-1.15	0.51	0.701332
14196	dm3.chrX	11,833,765 – 11,833,897	- - CDS="CDS;ID=CDS_FBgn0005563:5_904;Name=cac-cds;Parent=FBtr0073585;parent_type=mRNA" - - - - -	19547	11,833,765 – 11,833,874	+	14	115	84.09	-2.20	0.60	0.925125
				19548	11,833,765 – 11,833,874	-	14	115	84.09	-2.01	0.65	0.920873
				19549	11,833,802 – 11,833,897	+	14	111	76.49	-1.28	0.54	0.769438
14197	dm3.chrX	11,857,291 – 11,857,382	- - - intron="intron;ID=intron_FBgn0005563:19_FBgn0005563:18;Name=cac-in;Parent=FBtr0100302,FBtr0100303,FBtr0100304,FBtr0100305,FBtr0073586,FBtr0073584,FBtr0073587,FBtr0073589,FBtr0073585,FBtr0073588,FBtr0304584,FBtr0304585;parent_type=mRNA" - - - -	19550	11,857,291 – 11,857,382	+	9	101	80.70	-2.48	0.48	0.867164
14197	dm3.chrX	11,857,291 – 11,857,382		19551	11,857,291 – 11,857,382	-	9	101	80.70	-2.07	0.52	0.720174
14198	dm3.chrX	11,864,590 – 11,864,711	- - CDS="CDS;ID=CDS_FBgn0005563:22_904;Name=cac-cds;Parent=FBtr0073585;parent_type=mRNA" - - - - -	19552	11,864,590 – 11,864,706	+	15	120	84.89	-2.75	0.65	0.988108
				19553	11,864,590 – 11,864,706	-	15	120	84.89	-2.79	0.71	0.993549
				19554	11,864,595 – 11,864,711	-	15	120	82.23	-1.62	0.56	0.585789
14199	dm3.chrX	11,895,373 – 11,895,469	- - - intron="intron;ID=intron_FBgn0001083:14_FBgn0001083:13;Name=fw-in;Parent=FBtr0073580;parent_type=mRNA" - - - -	19555	11,895,373 – 11,895,469	-	5	108	83.38	-1.14	0.84	0.600541
14200	dm3.chrX	11,896,808 – 11,896,870	- - - intron="intron;ID=intron_FBgn0001083:15_FBgn0001083:14;Name=fw-in;Parent=FBtr0073580;parent_type=mRNA" - - - -	19556	11,896,808 – 11,896,870	+	7	69	72.40	-1.85	0.51	0.938475
14201	dm3.chrX	11,900,010 – 11,900,108	- - - - - - - -	19557	11,900,010 – 11,900,108	+	6	98	79.34	-1.26	0.68	0.642460
14202	dm3.chrX	11,900,852 – 11,900,906	- - - - - - - -	19558	11,900,852 – 11,900,906	-	4	72	76.98	-1.26	0.84	0.799818
14203	dm3.chrX	11,902,164 – 11,902,260	- - - - - - - -	19559	11,902,164 – 11,902,260	-	5	110	60.51	-0.25	0.55	0.570108
14204	dm3.chrX	11,915,181 – 11,915,276	- - CDS="CDS;ID=CDS_CG1796:1_925;Name=Tango4-cds;Parent=FBtr0073622;parent_type=mRNA" - - - - -	19560	11,915,181 – 11,915,276	-	14	105	71.24	-1.10	0.46	0.748346
14205	dm3.chrX	11,933,127 – 11,933,196	- - - - - - - -	19561	11,933,127 – 11,933,196	+	10	69	92.01	-2.58	0.89	0.988380
14206	dm3.chrX	11,935,258 – 11,935,385	- - - - - - - -	19562	11,935,258 – 11,935,385	+	11	145	84.70	-2.87	0.53	0.948268
14207	dm3.chrX	11,935,437 – 11,935,498	- - - - - - - -	19563	11,935,437 – 11,935,498	-	3	61	81.71	-1.84	0.91	0.958828
14208	dm3.chrX	11,935,831 – 11,935,904	- - - - - - - -	19564	11,935,831 – 11,935,904	+	6	88	64.44	-3.01	0.34	0.996403
14209	dm3.chrX	11,939,894 – 11,939,985	- - - - - - - -	19565	11,939,894 – 11,939,985	+	5	100	90.59	-2.15	0.85	0.925198
14209	dm3.chrX	11,939,894 – 11,939,985	- - - - - - - -	19566	11,939,894 – 11,939,985	-	5	100	90.59	-1.65	0.83	0.628780
14210	dm3.chrX	11,942,547 – 11,942,607	- - - - - - - -	19567	11,942,547 – 11,942,607	-	8	62	88.43	-2.31	0.60	0.581245
14211	dm3.chrX	11,951,274 – 11,951,366	- - - - - - - -	19568	11,951,274 – 11,951,366	+	6	102	83.15	-2.15	0.60	0.755491
14212	dm3.chrX	11,962,577 – 11,962,656	- - - - - - - -	19569	11,962,577 – 11,962,656	+	5	81	93.61	-2.25	0.79	0.785947
14213	dm3.chrX	11,963,275 – 11,963,373	- - - - - - - -	19570	11,963,275 – 11,963,373	+	3	98	96.60	-1.48	0.90	0.517152
14214	dm3.chrX	11,964,812 – 11,964,907	- - CDS="CDS;ID=CDS_FBgn0085352:2_1005;Name=CG34323-cds;Parent=FBtr0112525;parent_type=mRNA" - - - - -	19571	11,964,812 – 11,964,907	+	6	114	62.96	-1.80	0.34	0.833112
14214	dm3.chrX	11,964,812 – 11,964,907		19572	11,964,812 – 11,964,907	-	6	114	62.96	-1.11	0.56	0.958306
14215	dm3.chrX	11,968,750 – 11,968,849	- - - - - - - -	19573	11,968,750 – 11,968,849	+	9	109	67.70	-1.54	0.66	0.996402
14216	dm3.chrX	11,974,326 – 11,974,424	- - - - - - - -	19574	11,974,326 – 11,974,424	-	12	117	69.17	-0.97	0.52	0.855443
14217	dm3.chrX	11,981,375 – 11,981,453	FBnoncoding="ncRNA;ID=FBtr0073625;Name=CR32657-RA;Parent=FBgn0052657;Dbxref=FlyBase_Annotation_IDs:CR32657-RA,REFSEQ:NR_002108;score_text=Weakly" - - - - - - -	19575	11,981,375 – 11,981,453	+	5	87	70.65	-3.29	0.63	0.999677
14217	dm3.chrX	11,981,375 – 11,981,453		19576	11,981,375 – 11,981,453	-	5	87	70.65	-2.85	0.67	0.999304
14218	dm3.chrX	11,985,592 – 11,985,700	FBnoncoding="ncRNA;ID=FBtr0073628;Name=CR32658-RC;Parent=FBgn0040859;Dbxref=FlyBase_Annotation_IDs:CR32658-RC,REFSEQ:NR_002109;score_text=Weakly" - - - - - - -	19577	11,985,592 – 11,985,700	+	3	108	83.92	-1.54	0.82	0.650946
14219	dm3.chrX	11,989,865 – 11,989,958	- - - - - - - -	19578	11,989,865 – 11,989,958	+	9	97	74.52	-1.14	0.61	0.824225
14220	dm3.chrX	11,999,128 – 11,999,199	- - - - - - - -	19579	11,999,128 – 11,999,199	+	6	71	69.20	-0.93	0.47	0.508974
14221	dm3.chrX	12,000,568 – 12,000,698	- - - - - - - -	19580	12,000,568 – 12,000,698	+	12	147	86.05	-1.78	0.75	0.842378
14221	dm3.chrX	12,000,568 – 12,000,698	- - - - - - - -	19581	12,000,568 – 12,000,698	-	12	147	86.05	-2.84	0.72	0.990708
14222	dm3.chrX	12,014,656 – 12,014,710	- - - - - - - -	19582	12,014,656 – 12,014,710	+	7	54	81.66	-2.20	0.66	0.932246
14222	dm3.chrX	12,014,656 – 12,014,710	- - - - - - - -	19583	12,014,656 – 12,014,710	-	7	54	81.66	-1.89	0.89	0.978454
14223	dm3.chrX	12,016,155 – 12,016,250	- - - - - - - -	19584	12,016,155 – 12,016,250	+	8	117	71.55	-0.89	0.67	0.702421
14224	dm3.chrX	12,020,716 – 12,020,845	- - - - - - - -	19585	12,020,716 – 12,020,845	-	4	136	80.23	-1.63	0.71	0.684433
14225	dm3.chrX	12,026,439 – 12,026,537	- - - - - - - -	19586	12,026,439 – 12,026,537	-	7	110	71.07	-1.72	0.40	0.577234
14226	dm3.chrX	12,028,336 – 12,028,433	- - - - - - - -	19587	12,028,336 – 12,028,433	-	5	107	67.70	-1.71	0.42	0.832342
14227	dm3.chrX	12,031,296 – 12,031,391	- - - - - - - -	19588	12,031,296 – 12,031,391	+	6	95	82.27	-1.59	0.64	0.573777
14227	dm3.chrX	12,031,296 – 12,031,391	- - - - - - - -	19589	12,031,296 – 12,031,391	-	6	95	82.27	-2.66	0.61	0.976843
14228	dm3.chrX	12,049,842 – 12,049,962	- - - - - - - -	19590	12,049,842 – 12,049,962	+	11	139	83.58	-3.70	0.50	0.995249
14228	dm3.chrX	12,049,842 – 12,049,962	- - - - - - - -	19591	12,049,842 – 12,049,962	-	11	139	83.58	-2.73	0.56	0.954976
14229	dm3.chrX	12,053,509 – 12,053,606	- - - - - - - -	19592	12,053,509 – 12,053,606	+	7	110	67.95	-2.16	0.33	0.875362
14229	dm3.chrX	12,053,509 – 12,053,606	- - - - - - - -	19593	12,053,509 – 12,053,606	-	7	110	67.95	-2.16	0.37	0.942401
14230	dm3.chrX	12,078,402 – 12,078,491	- - - - - - - -	19594	12,078,402 – 12,078,491	-	6	91	71.69	-1.72	0.60	0.984922
14231	dm3.chrX	12,079,259 – 12,079,325	- - - - - - - -	19595	12,079,259 – 12,079,325	+	4	69	94.07	-1.39	0.96	0.824603
14231	dm3.chrX	12,079,259 – 12,079,325	- - - - - - - -	19596	12,079,259 – 12,079,325	-	4	69	94.07	-2.16	0.96	0.975886
14232	dm3.chrX	12,081,491 – 12,081,564	- - - - - - - -	19597	12,081,491 – 12,081,564	+	5	86	62.26	-1.95	0.30	0.749981
14233	dm3.chrX	12,085,219 – 12,085,272	- - - - - - - -	19598	12,085,219 – 12,085,272	+	6	63	81.78	-2.78	0.83	0.995613
14233	dm3.chrX	12,085,219 – 12,085,272	- - - - - - - -	19599	12,085,219 – 12,085,272	-	6	63	81.78	-1.88	0.77	0.921947
14234	dm3.chrX	12,086,089 – 12,086,186	- - - - - - - -	19600	12,086,089 – 12,086,186	+	4	101	79.09	-2.32	0.62	0.923205
14235	dm3.chrX	12,089,032 – 12,089,145	- - - intron="intron;ID=intron_FBgn0259240:1_FBgn0259240:2;Name=Ten-a-in;Parent=FBtr0299859,FBtr0299860;parent_type=mRNA" - - - -	19601	12,089,032 – 12,089,145	-	6	120	91.73	-1.97	0.82	0.803941
14236	dm3.chrX	12,095,194 – 12,095,249	- - - intron="intron;ID=intron_FBgn0259240:3_FBgn0259240:4;Name=Ten-a-in;Parent=FBtr0300203;parent_type=mRNA" - - - -	19602	12,095,194 – 12,095,249	-	6	57	92.76	-2.66	0.80	0.951862
14237	dm3.chrX	12,095,404 – 12,095,494	- - - intron="intron;ID=intron_FBgn0259240:3_FBgn0259240:4;Name=Ten-a-in;Parent=FBtr0300203;parent_type=mRNA" - - - -	19603	12,095,404 – 12,095,494	-	6	107	74.61	-1.94	0.51	0.869479
14238	dm3.chrX	12,097,931 – 12,098,028	- - - intron="intron;ID=intron_FBgn0259240:3_FBgn0259240:4;Name=Ten-a-in;Parent=FBtr0300203;parent_type=mRNA" - - - -	19604	12,097,931 – 12,098,028	-	5	103	93.78	-2.48	0.72	0.690638
14239	dm3.chrX	12,098,369 – 12,098,427	- - - - - - - -	19605	12,098,369 – 12,098,427	-	6	60	75.12	-1.43	0.66	0.888062
14240	dm3.chrX	12,106,037 – 12,106,102	- - - intron="intron;ID=intron_FBgn0259240:4_FBgn0259240:5;Name=Ten-a-in;Parent=FBtr0300203;parent_type=mRNA" - - - -	19606	12,106,037 – 12,106,102	+	6	65	68.60	-2.05	0.29	0.682059
14241	dm3.chrX	12,112,115 – 12,112,178	- - - intron="intron;ID=intron_FBgn0259240:4_FBgn0259240:5;Name=Ten-a-in;Parent=FBtr0300203;parent_type=mRNA" - - - -	19607	12,112,115 – 12,112,178	+	5	63	97.78	-1.50	0.99	0.892455
14241	dm3.chrX	12,112,115 – 12,112,178		19608	12,112,115 – 12,112,178	-	5	63	97.78	-2.73	0.99	0.993686
14242	dm3.chrX	12,115,318 – 12,115,461	- - - intron="intron;ID=intron_FBgn0259240:4_FBgn0259240:5;Name=Ten-a-in;Parent=FBtr0300203;parent_type=mRNA" - - - -	19609	12,115,318 – 12,115,422	-	6	112	73.84	-1.88	0.61	0.978587
14242	dm3.chrX	12,115,318 – 12,115,461		19610	12,115,358 – 12,115,461	-	5	106	89.52	-1.54	0.84	0.655309
14243	dm3.chrX	12,119,154 – 12,119,273	- - - intron="intron;ID=intron_FBgn0259240:4_FBgn0259240:5;Name=Ten-a-in;Parent=FBtr0300203;parent_type=mRNA" - - - -	19611	12,119,154 – 12,119,251	+	6	99	76.22	-1.95	0.53	0.908286
				19612	12,119,154 – 12,119,251	-	6	99	76.22	-1.63	0.50	0.639072
				19613	12,119,181 – 12,119,273	+	6	100	75.31	-2.50	0.54	0.985546
				19614	12,119,181 – 12,119,273	-	6	100	75.31	-2.29	0.48	0.933326
14244	dm3.chrX	12,119,560 – 12,119,611	- - - intron="intron;ID=intron_FBgn0259240:4_FBgn0259240:5;Name=Ten-a-in;Parent=FBtr0300203;parent_type=mRNA" - - - -	19615	12,119,560 – 12,119,611	-	3	63	65.43	-0.72	0.86	0.850773
14245	dm3.chrX	12,123,234 – 12,123,467	- - - intron="intron;ID=intron_FBgn0259240:4_FBgn0259240:5;Name=Ten-a-in;Parent=FBtr0300203;parent_type=mRNA" - - - -	19616	12,123,234 – 12,123,348	-	7	122	65.23	-1.73	0.30	0.692086
				19617	12,123,348 – 12,123,467	+	3	119	97.75	-1.67	0.93	0.770254
				19618	12,123,348 – 12,123,467	-	3	119	97.75	-2.17	0.85	0.750478
14246	dm3.chrX	12,124,750 – 12,124,812	- - - intron="intron;ID=intron_FBgn0259240:7_FBgn0259240:8;Name=Ten-a-in;Parent=FBtr0299858;parent_type=mRNA" - - - -	19619	12,124,750 – 12,124,812	-	5	62	98.06	-1.37	0.93	0.570054
14247	dm3.chrX	12,129,770 – 12,129,836	- - - - - - - -	19620	12,129,770 – 12,129,836	+	5	74	80.84	-1.81	0.75	0.897767
14247	dm3.chrX	12,129,770 – 12,129,836	- - - - - - - -	19621	12,129,770 – 12,129,836	-	5	74	80.84	-1.49	0.87	0.918894
14248	dm3.chrX	12,132,450 – 12,132,589	- - - - - - - -	19622	12,132,450 – 12,132,550	-	6	121	68.91	-0.87	0.59	0.540102
14248	dm3.chrX	12,132,450 – 12,132,589	- - - - - - - -	19623	12,132,490 – 12,132,589	+	6	117	71.73	-1.42	0.53	0.649445
14249	dm3.chrX	12,132,688 – 12,132,796	- - - - - - - -	19624	12,132,688 – 12,132,796	-	5	118	79.67	-1.77	0.62	0.617874
14250	dm3.chrX	12,136,879 – 12,136,996	- - - - - - - -	19625	12,136,879 – 12,136,996	-	4	127	83.38	-2.47	0.74	0.960751
14251	dm3.chrX	12,144,472 – 12,144,539	- - - - - - - -	19626	12,144,472 – 12,144,539	-	12	70	90.39	-2.06	0.89	0.966910
14252	dm3.chrX	12,154,593 – 12,154,724	- - - - - - - -	19627	12,154,593 – 12,154,724	+	7	140	74.03	-2.94	0.40	0.987770
14253	dm3.chrX	12,157,272 – 12,157,362	- - - - - - - -	19628	12,157,272 – 12,157,362	+	4	96	83.21	-3.36	0.69	0.994316
14253	dm3.chrX	12,157,272 – 12,157,362	- - - - - - - -	19629	12,157,272 – 12,157,362	-	4	96	83.21	-2.78	0.53	0.819353
14254	dm3.chrX	12,159,591 – 12,159,681	- - - - - - - -	19630	12,159,591 – 12,159,681	-	8	120	74.41	-1.64	0.63	0.916802
14255	dm3.chrX	12,170,798 – 12,170,890	- - - intron="intron;ID=intron_FBgn0259240:9_FBgn0259240:10;Name=Ten-a-in;Parent=FBtr0300201,FBtr0300202,FBtr0300203,FBtr0300204,FBtr0299858,FBtr0299859,FBtr0299860;parent_type=mRNA" - - - -	19631	12,170,798 – 12,170,890	+	5	92	93.36	-2.69	0.91	0.988191
14256	dm3.chrX	12,174,816 – 12,174,906	- - - intron="intron;ID=intron_FBgn0259240:9_FBgn0259240:10;Name=Ten-a-in;Parent=FBtr0300201,FBtr0300202,FBtr0300203,FBtr0300204,FBtr0299858,FBtr0299859,FBtr0299860;parent_type=mRNA" - - - -	19632	12,174,816 – 12,174,906	-	10	115	92.59	-1.48	0.88	0.650223
14257	dm3.chrX	12,177,035 – 12,177,142	- - - intron="intron;ID=intron_FBgn0259240:9_FBgn0259240:10;Name=Ten-a-in;Parent=FBtr0300201,FBtr0300202,FBtr0300203,FBtr0300204,FBtr0299858,FBtr0299859,FBtr0299860;parent_type=mRNA" - - - -	19633	12,177,035 – 12,177,142	-	4	107	77.83	-1.45	0.76	0.772700
14258	dm3.chrX	12,200,677 – 12,200,783	- - - intron="intron;ID=intron_FBgn0259240:15_FBgn0259240:16;Name=Ten-a-in;Parent=FBtr0300201,FBtr0300202,FBtr0300203,FBtr0300204,FBtr0299858,FBtr0299859,FBtr0299860;parent_type=mRNA" - - - -	19634	12,200,677 – 12,200,783	-	6	110	53.08	-1.64	0.27	0.908815
14259	dm3.chrX	12,202,618 – 12,202,717	- - - intron="intron;ID=intron_FBgn0259240:15_FBgn0259240:16;Name=Ten-a-in;Parent=FBtr0300201,FBtr0300202,FBtr0300203,FBtr0300204,FBtr0299858,FBtr0299859,FBtr0299860;parent_type=mRNA" - - - -	19635	12,202,618 – 12,202,717	+	11	113	73.62	-1.51	0.48	0.785008
14260	dm3.chrX	12,203,414 – 12,203,468	- - - intron="intron;ID=intron_FBgn0259240:15_FBgn0259240:16;Name=Ten-a-in;Parent=FBtr0300201,FBtr0300202,FBtr0300203,FBtr0300204,FBtr0299858,FBtr0299859,FBtr0299860;parent_type=mRNA" - - - -	19636	12,203,414 – 12,203,468	-	6	54	94.69	-1.48	0.89	0.604058
14261	dm3.chrX	12,211,724 – 12,211,831	- - - intron="intron;ID=intron_FBgn0259240:18_FBgn0259240:19;Name=Ten-a-in;Parent=FBtr0300201,FBtr0300202,FBtr0300203,FBtr0300204,FBtr0299858,FBtr0299859,FBtr0299860;parent_type=mRNA" - - - -	19637	12,211,724 – 12,211,831	-	6	114	66.77	-2.12	0.35	0.942902
14262	dm3.chrX	12,220,355 – 12,220,462	- - - intron="intron;ID=intron_FBgn0259240:20_FBgn0259240:22;Name=Ten-a-in;Parent=FBtr0300202,FBtr0300203,FBtr0300204,FBtr0299859,FBtr0299860;parent_type=mRNA" - - - -	19638	12,220,355 – 12,220,462	+	6	110	78.07	-0.66	0.83	0.584467
14262	dm3.chrX	12,220,355 – 12,220,462		19639	12,220,355 – 12,220,462	-	6	110	78.07	-1.96	0.75	0.980806
14263	dm3.chrX	12,237,860 – 12,237,994	- - - - - - - -	19640	12,237,860 – 12,237,963	+	10	114	82.86	-1.85	0.57	0.572429
14263	dm3.chrX	12,237,860 – 12,237,994	- - - - - - - -	19641	12,237,892 – 12,237,994	+	6	113	86.75	-2.05	0.78	0.897362
14264	dm3.chrX	12,238,861 – 12,238,954	- - - - - - - -	19642	12,238,861 – 12,238,954	+	9	102	66.80	-0.80	0.47	0.700493
14265	dm3.chrX	12,246,751 – 12,246,865	- - - - - - - -	19643	12,246,751 – 12,246,865	-	4	115	76.49	-2.63	0.60	0.977908
14266	dm3.chrX	12,249,540 – 12,249,641	- - - - - - - -	19644	12,249,540 – 12,249,641	-	4	107	58.69	-2.33	0.35	0.982750
14267	dm3.chrX	12,254,545 – 12,254,679	- - - - - - - -	19645	12,254,545 – 12,254,679	+	10	147	78.88	-2.81	0.44	0.961620
14268	dm3.chrX	12,260,836 – 12,260,934	- - - - - - - -	19646	12,260,836 – 12,260,934	-	8	117	82.87	-2.09	0.67	0.878667
14269	dm3.chrX	12,269,440 – 12,269,535	- - - - - - - -	19647	12,269,440 – 12,269,535	+	4	97	65.38	-1.26	0.49	0.695244
14270	dm3.chrX	12,274,943 – 12,275,008	- - - - - - - -	19648	12,274,943 – 12,275,008	-	5	76	77.95	-2.00	0.54	0.655775
14271	dm3.chrX	12,281,774 – 12,281,833	- - - - - - - -	19649	12,281,774 – 12,281,833	+	4	59	88.70	-1.95	0.72	0.514322
14271	dm3.chrX	12,281,774 – 12,281,833	- - - - - - - -	19650	12,281,774 – 12,281,833	-	4	59	88.70	-1.98	0.72	0.542621
14272	dm3.chrX	12,289,582 – 12,289,640	- - - - - - - -	19651	12,289,582 – 12,289,640	+	7	68	69.55	-1.65	0.38	0.649177
14273	dm3.chrX	12,296,318 – 12,296,409	- - - - - - - -	19652	12,296,318 – 12,296,409	+	4	92	78.44	-2.05	0.64	0.900027
14274	dm3.chrX	12,300,592 – 12,300,789	- - CDS="CDS;ID=CDS_CG32651:1_918;Name=CG32651-cds;Parent=FBtr0073672;parent_type=mRNA" - - - - -	19653	12,300,592 – 12,300,712	-	6	120	77.94	-3.02	0.38	0.951097
				19654	12,300,632 – 12,300,752	-	6	120	77.39	-1.95	0.49	0.763498
				19655	12,300,672 – 12,300,789	-	6	120	73.67	-2.37	0.43	0.950870
14275	dm3.chrX	12,305,563 – 12,305,619	- - CDS="CDS;ID=CDS_CG32652:4_934;Name=CG32652-cds;Parent=FBtr0073671;parent_type=mRNA" - - - - -	19656	12,305,563 – 12,305,619	+	5	56	88.39	-1.41	0.90	0.810384
14276	dm3.chrX	12,306,485 – 12,306,562	- - - - - - - -	19657	12,306,485 – 12,306,562	-	5	78	91.53	-2.11	0.76	0.695894
14277	dm3.chrX	12,309,028 – 12,309,124	- - - - - - - -	19658	12,309,028 – 12,309,124	-	5	114	77.44	-2.12	0.73	0.980897
14278	dm3.chrX	12,314,301 – 12,314,417	- - - - - - - -	19659	12,314,301 – 12,314,417	-	4	116	79.77	-2.47	0.50	0.801014
14279	dm3.chrX	12,314,466 – 12,314,593	- - - - - - - -	19660	12,314,466 – 12,314,564	+	6	112	79.67	-1.98	0.70	0.935806
14279	dm3.chrX	12,314,466 – 12,314,593	- - - - - - - -	19661	12,314,494 – 12,314,593	+	6	118	83.18	-2.66	0.66	0.970224
14280	dm3.chrX	12,316,056 – 12,316,134	- - - - - - - -	19662	12,316,056 – 12,316,134	+	9	97	74.04	-2.27	0.33	0.519200
14281	dm3.chrX	12,319,113 – 12,319,206	- - - - - - - -	19663	12,319,113 – 12,319,206	+	11	93	100.00	-1.80	1.00	0.944448
14282	dm3.chrX	12,324,222 – 12,324,332	- - - - - - - -	19664	12,324,222 – 12,324,332	+	8	137	67.33	-1.19	0.46	0.583332
14282	dm3.chrX	12,324,222 – 12,324,332	- - - - - - - -	19665	12,324,222 – 12,324,332	-	8	137	67.33	-1.35	0.64	0.971723
14283	dm3.chrX	12,324,586 – 12,324,700	- - - - - - - -	19666	12,324,586 – 12,324,700	+	8	118	85.34	-2.50	0.68	0.966787
14284	dm3.chrX	12,345,097 – 12,345,191	- - CDS="CDS;ID=CDS_FBgn0259680:14_961;Name=Pkcdelta-cds;Parent=FBtr0299935,FBtr0299936,FBtr0299937;parent_type=mRNA" - - - - -	19667	12,345,097 – 12,345,191	-	14	111	82.62	-1.56	0.65	0.726228
14285	dm3.chrX	12,356,396 – 12,356,448	- - - intron="intron;ID=intron_CG1900:1_CG1900:2;Name=Rab40-in;Parent=FBtr0073668,FBtr0073669;parent_type=mRNA" - - - -	19668	12,356,396 – 12,356,448	-	4	52	97.44	-1.21	0.99	0.784438
14286	dm3.chrX	12,360,331 – 12,360,427	- - - intron="intron;ID=intron_FBgn0259143:2_FBgn0259143:4;Name=CG42258-in;Parent=FBtr0299558;parent_type=mRNA" - - - -	19669	12,360,331 – 12,360,427	+	5	102	58.67	-0.98	0.40	0.700231
14287	dm3.chrX	12,361,196 – 12,361,305	- - - intron="intron;ID=intron_FBgn0259143:2_FBgn0259143:4;Name=CG42258-in;Parent=FBtr0299558;parent_type=mRNA" - - - -	19670	12,361,196 – 12,361,305	+	10	126	75.41	-2.33	0.41	0.861414
14287	dm3.chrX	12,361,196 – 12,361,305		19671	12,361,196 – 12,361,305	-	10	126	75.41	-2.31	0.37	0.723072
14288	dm3.chrX	12,362,785 – 12,362,847	- - - intron="intron;ID=intron_FBgn0259143:2_FBgn0259143:4;Name=CG42258-in;Parent=FBtr0299558;parent_type=mRNA" - - - -	19672	12,362,785 – 12,362,847	-	5	66	93.93	-1.50	0.96	0.878442
14289	dm3.chrX	12,367,064 – 12,367,119	- - - intron="intron;ID=intron_FBgn0259143:3_FBgn0259143:4;Name=CG42258-in;Parent=FBtr0299559;parent_type=mRNA" - - - -	19673	12,367,064 – 12,367,119	+	4	55	94.83	-4.01	0.98	0.998794
14289	dm3.chrX	12,367,064 – 12,367,119		19674	12,367,064 – 12,367,119	-	4	55	94.83	-2.29	0.98	0.986109
14290	dm3.chrX	12,388,545 – 12,388,663	- - CDS="CDS;ID=CDS_CG15730:1_904;Name=CG15730-cds;Parent=FBtr0073667;parent_type=mRNA" - - - - -	19675	12,388,545 – 12,388,663	+	8	119	61.97	-1.15	0.32	0.567927
14291	dm3.chrX	12,390,692 – 12,390,783	- - - - - - - -	19676	12,390,692 – 12,390,783	-	6	94	71.65	-1.69	0.45	0.775102
14292	dm3.chrX	12,396,935 – 12,397,050	- - - intron="intron;ID=intron_CG2556:1_CG2556:2;Name=CG2556-in;Parent=FBtr0073652;parent_type=mRNA" - - - -	19677	12,396,935 – 12,397,050	+	5	117	72.87	-1.05	0.62	0.571645
14292	dm3.chrX	12,396,935 – 12,397,050		19678	12,396,935 – 12,397,050	-	5	117	72.87	-2.06	0.67	0.987874
14293	dm3.chrX	12,397,284 – 12,397,375	- - - intron="intron;ID=intron_CG2556:1_CG2556:2;Name=CG2556-in;Parent=FBtr0073652;parent_type=mRNA" - - - -	19679	12,397,284 – 12,397,375	+	5	107	89.66	-2.28	0.86	0.954812
14294	dm3.chrX	12,408,017 – 12,408,114	- - - intron="intron;ID=intron_CG2556:1_CG2556:2;Name=CG2556-in;Parent=FBtr0073652;parent_type=mRNA" - - - -	19680	12,408,017 – 12,408,114	-	4	97	95.51	-1.86	0.98	0.956553
14295	dm3.chrX	12,409,728 – 12,409,822	- - CDS="CDS;ID=CDS_CG2556:3_904;Name=CG2556-cds;Parent=FBtr0073652;parent_type=mRNA" - - - - -	19681	12,409,728 – 12,409,822	-	11	103	65.75	-0.27	0.47	0.500000
14296	dm3.chrX	12,424,473 – 12,424,568	- - - intron="intron;ID=intron_FBgn0259109:9_FBgn0259109:8;Name=CG42251-in;Parent=FBtr0299532;parent_type=mRNA" - - - -	19682	12,424,473 – 12,424,568	-	6	105	72.79	-1.40	0.52	0.732382
14297	dm3.chrX	12,429,183 – 12,429,286	- - - - - - - -	19683	12,429,183 – 12,429,286	+	6	103	75.15	-1.46	0.64	0.920359
14297	dm3.chrX	12,429,183 – 12,429,286	- - - - - - - -	19684	12,429,183 – 12,429,286	-	6	103	75.15	-1.87	0.67	0.983864
14298	dm3.chrX	12,429,357 – 12,429,453	- - - - - - - -	19685	12,429,357 – 12,429,453	-	12	109	78.00	-1.22	0.81	0.933137
14299	dm3.chrX	12,429,693 – 12,429,788	- - - - - - - -	19686	12,429,693 – 12,429,788	+	5	100	83.37	-1.48	0.72	0.510034
14299	dm3.chrX	12,429,693 – 12,429,788	- - - - - - - -	19687	12,429,693 – 12,429,788	-	5	100	83.37	-1.34	0.79	0.625894
14300	dm3.chrX	12,435,619 – 12,435,706	- - - - - - - -	19688	12,435,619 – 12,435,706	+	7	102	71.36	-0.87	0.76	0.866580
14300	dm3.chrX	12,435,619 – 12,435,706	- - - - - - - -	19689	12,435,619 – 12,435,706	-	7	102	71.36	-2.32	0.63	0.996132
14301	dm3.chrX	12,436,474 – 12,436,579	- - - - - - - -	19690	12,436,474 – 12,436,579	+	5	120	76.52	-2.88	0.51	0.982352
14302	dm3.chrX	12,444,683 – 12,444,792	- - - - - - - -	19691	12,444,683 – 12,444,792	+	5	109	86.12	-2.37	0.79	0.963531
14303	dm3.chrX	12,447,900 – 12,447,992	- - - intron="intron;ID=intron_CG2555:2_CG2555:3;Name=Cpr11B-in;Parent=FBtr0073653;parent_type=mRNA" - - - -	19692	12,447,900 – 12,447,992	-	4	119	64.90	-1.71	0.41	0.551128
14304	dm3.chrX	12,452,878 – 12,452,969	- - - - - - - -	19693	12,452,878 – 12,452,969	-	9	92	69.74	-1.70	0.56	0.991698
14305	dm3.chrX	12,455,661 – 12,455,734	- - - - - - - -	19694	12,455,661 – 12,455,734	-	9	73	70.19	-0.98	0.54	0.872097
14306	dm3.chrX	12,459,512 – 12,459,596	- - - - - - - -	19695	12,459,512 – 12,459,596	+	3	84	98.41	-1.46	1.02	0.928964
14307	dm3.chrX	12,475,774 – 12,475,865	- - CDS="CDS;ID=CDS_FBgn0030400:6_941;Name=CG11138-cds;Parent=FBtr0073662,FBtr0273245;parent_type=mRNA" - - - - -	19696	12,475,774 – 12,475,865	-	7	97	58.13	-0.70	0.41	0.778791
14308	dm3.chrX	12,485,356 – 12,485,477	- - - intron="intron;ID=intron_FBgn0041203:10_FBgn0041203:9;Name=LIMK1-in;Parent=FBtr0073660,FBtr0301830;parent_type=mRNA" - - - -	19697	12,485,356 – 12,485,477	-	6	124	60.98	-1.16	0.40	0.814172
14309	dm3.chrX	12,515,646 – 12,515,739	- - - - - - - -	19698	12,515,646 – 12,515,739	-	8	99	69.12	-1.39	0.39	0.602627
14310	dm3.chrX	12,522,686 – 12,522,779	- - CDS="CDS;ID=CDS_FBgn0030410:1_896;Name=CG15727-cds;Parent=FBtr0073709;parent_type=mRNA" - - - - -	19699	12,522,686 – 12,522,779	+	7	102	59.08	-0.75	0.36	0.505236
14311	dm3.chrX	12,523,130 – 12,523,232	- - CDS="CDS;ID=CDS_FBgn0030410:1_896;Name=CG15727-cds;Parent=FBtr0073709;parent_type=mRNA" - - - - -	19700	12,523,130 – 12,523,232	+	12	114	71.42	-1.03	0.46	0.587886
14312	dm3.chrX	12,530,384 – 12,530,481	FBnoncoding="pre_miRNA;ID=FBtr0304203;Name=mir-970-RM;Parent=FBgn0262187;Alias=CR42894-RM;Dbxref=FlyBase_Annotation_IDs:CR42894-RM,miRBase:MI0005827" - - intron="intron;ID=intron_FBgn0030412:4_FBgn0030412:5;Name=tomosyn-in;Parent=FBtr0073677,FBtr0073678,FBtr0073679,FBtr0073676,FBtr0300375,FBtr0300376;parent_type=mRNA" - - - "mirBase_v16=dme-mir-970\|5.6e-40"	19701	12,530,384 – 12,530,481	+	12	104	72.81	-1.53	0.73	0.990369
14313	dm3.chrX	12,537,097 – 12,537,184	- - - intron="intron;ID=intron_FBgn0030412:16_FBgn0030412:19;Name=tomosyn-in;Parent=FBtr0073677,FBtr0073676;parent_type=mRNA" - - - -	19702	12,537,097 – 12,537,184	-	6	91	68.58	-1.82	0.45	0.939368
14314	dm3.chrX	12,549,293 – 12,549,393	- - CDS="CDS;ID=CDS_FBgn0015024:4_944;Name=CkIalpha-cds;Parent=FBtr0073680,FBtr0073681,FBtr0073682,FBtr0300380;parent_type=mRNA" intron="intron;ID=intron_FBgn0015024:4_FBgn0015024:5;Name=CkIalpha-in;Parent=FBtr0073680,FBtr0073681,FBtr0073682,FBtr0300380;parent_type=mRNA" - - - -	19703	12,549,293 – 12,549,393	-	9	108	67.44	-0.82	0.43	0.539703
14315	dm3.chrX	12,558,443 – 12,558,560	- - - intron="intron;ID=intron_CG4070:6_CG4070:3;Name=Tis11-in;Parent=FBtr0073683;parent_type=mRNA" - - - -	19704	12,558,443 – 12,558,557	+	3	114	98.25	-2.78	1.00	0.994539
				19705	12,558,443 – 12,558,557	-	3	114	98.25	-1.42	0.92	0.525415
				19706	12,558,446 – 12,558,560	+	3	114	98.25	-2.74	0.99	0.993168
14316	dm3.chrX	12,562,134 – 12,562,251	- - - intron="intron;ID=intron_CG4070:6_CG4070:3;Name=Tis11-in;Parent=FBtr0073683;parent_type=mRNA" - - - -	19707	12,562,134 – 12,562,251	+	5	118	84.18	-2.29	0.69	0.904201
14317	dm3.chrX	12,562,314 – 12,562,409	- - - intron="intron;ID=intron_CG4070:6_CG4070:3;Name=Tis11-in;Parent=FBtr0073683;parent_type=mRNA" - - - -	19708	12,562,314 – 12,562,409	-	4	114	85.65	-2.50	0.66	0.845407
14318	dm3.chrX	12,563,362 – 12,563,505	- - - intron="intron;ID=intron_CG4070:6_CG4070:3;Name=Tis11-in;Parent=FBtr0073683;parent_type=mRNA" - - - -	19709	12,563,362 – 12,563,474	+	5	120	87.70	-2.48	0.73	0.916028
				19710	12,563,362 – 12,563,474	-	5	120	87.70	-2.97	0.72	0.977413
				19711	12,563,398 – 12,563,505	-	5	120	86.44	-2.50	0.66	0.865060
14319	dm3.chrX	12,568,451 – 12,568,543	- - - intron="intron;ID=intron_CG4070:6_CG4070:3;Name=Tis11-in;Parent=FBtr0073683;parent_type=mRNA" - - - -	19712	12,568,451 – 12,568,543	-	6	111	69.37	-1.58	0.51	0.892046
14320	dm3.chrX	12,587,700 – 12,587,755	- - - intron="intron;ID=intron_CG4013:6_CG4013:7;Name=Smr-in;Parent=FBtr0073706,FBtr0073707,FBtr0073708;parent_type=mRNA" - - - -	19713	12,587,700 – 12,587,755	-	8	57	92.82	-2.35	1.02	0.994980
14321	dm3.chrX	12,616,247 – 12,616,342	- - - intron="intron;ID=intron_CG4013:2_CG4013:3;Name=Smr-in;Parent=FBtr0073706;parent_type=mRNA" - - - -	19714	12,616,247 – 12,616,341	-	7	105	64.51	-0.90	0.44	0.584752
14321	dm3.chrX	12,616,247 – 12,616,342		19715	12,616,248 – 12,616,342	-	7	105	64.81	-0.88	0.44	0.539332
14322	dm3.chrX	12,620,126 – 12,620,216	- - - intron="intron;ID=intron_CG4013:2_CG4013:3;Name=Smr-in;Parent=FBtr0073706;parent_type=mRNA" - - - -	19716	12,620,126 – 12,620,216	-	5	102	60.62	-1.79	0.40	0.967454
14323	dm3.chrX	12,624,749 – 12,624,813	- - - intron="intron;ID=intron_CG4013:2_CG4013:3;Name=Smr-in;Parent=FBtr0073706;parent_type=mRNA" - - - -	19717	12,624,749 – 12,624,813	+	3	65	95.85	-2.47	0.91	0.965256
14323	dm3.chrX	12,624,749 – 12,624,813		19718	12,624,749 – 12,624,813	-	3	65	95.85	-2.97	0.98	0.995747
14324	dm3.chrX	12,639,994 – 12,640,134	- - - intron="intron;ID=intron_CG4004:3_CG4004:4;Name=CG4004-in;Parent=FBtr0073687;parent_type=mRNA" - - - -	19719	12,639,994 – 12,640,134	+	3	140	81.38	-3.21	0.76	0.995681
14324	dm3.chrX	12,639,994 – 12,640,134		19720	12,639,994 – 12,640,134	-	3	140	81.38	-3.95	0.70	0.998632
14325	dm3.chrX	12,642,259 – 12,642,323	- - - - - - - -	19721	12,642,259 – 12,642,323	+	4	64	67.57	-0.21	0.89	0.515022
14326	dm3.chrX	12,660,718 – 12,660,824	- - - intron="intron;ID=intron_CG3812:5_CG3812:2;Name=CG3812-in;Parent=FBtr0073689;parent_type=mRNA" - - - -	19722	12,660,718 – 12,660,824	-	5	109	83.57	-2.44	0.49	0.588992
14327	dm3.chrX	12,664,489 – 12,664,589	- - CDS="CDS;ID=CDS_CG3812:4_908;Name=CG3812-cds;Parent=FBtr0073688,FBtr0073689;parent_type=mRNA" - - - - -	19723	12,664,489 – 12,664,589	+	10	111	53.91	-1.15	0.26	0.597924
14328	dm3.chrX	12,670,188 – 12,670,278	- - - - - - - -	19724	12,670,188 – 12,670,278	+	5	95	76.13	-1.46	0.65	0.797423
14329	dm3.chrX	12,675,050 – 12,675,160	- - - intron="intron;ID=intron_CG32647:2_CG32647:3;Name=CG32647-in;Parent=FBtr0073702,FBtr0073703;parent_type=mRNA" - - - -	19725	12,675,050 – 12,675,160	-	3	110	75.30	-2.66	0.61	0.979648
14330	dm3.chrX	12,676,220 – 12,676,348	- - - intron="intron;ID=intron_CG32647:2_CG32647:3;Name=CG32647-in;Parent=FBtr0073702,FBtr0073703;parent_type=mRNA" - - - -	19726	12,676,220 – 12,676,322	-	4	102	85.36	-2.04	0.64	0.511100
14330	dm3.chrX	12,676,220 – 12,676,348		19727	12,676,258 – 12,676,348	-	5	93	73.55	-1.85	0.60	0.953530
14331	dm3.chrX	12,707,675 – 12,707,767	- - - intron="intron;ID=intron_FBgn0259171:10_FBgn0259171:9;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19728	12,707,675 – 12,707,767	+	5	98	86.43	-1.66	0.84	0.838182
14331	dm3.chrX	12,707,675 – 12,707,767		19729	12,707,675 – 12,707,767	-	5	98	86.43	-2.06	0.67	0.642574
14332	dm3.chrX	12,711,962 – 12,712,017	- - - intron="intron;ID=intron_FBgn0259171:10_FBgn0259171:9;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19730	12,711,962 – 12,712,017	-	5	55	93.82	-1.76	0.98	0.955722
14333	dm3.chrX	12,719,388 – 12,719,439	- - - intron="intron;ID=intron_FBgn0259171:10_FBgn0259171:9;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19731	12,719,388 – 12,719,439	+	3	58	55.88	-1.49	0.60	0.988102
14333	dm3.chrX	12,719,388 – 12,719,439		19732	12,719,388 – 12,719,439	-	3	58	55.88	-0.91	0.48	0.620956
14334	dm3.chrX	12,720,009 – 12,720,117	- - - intron="intron;ID=intron_FBgn0259171:10_FBgn0259171:9;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19733	12,720,009 – 12,720,117	+	6	110	60.40	-2.22	0.20	0.814926
14335	dm3.chrX	12,723,412 – 12,723,509	- - - intron="intron;ID=intron_FBgn0259171:10_FBgn0259171:9;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19734	12,723,412 – 12,723,509	-	5	107	72.34	-1.31	0.54	0.541530
14336	dm3.chrX	12,733,523 – 12,733,627	- - - intron="intron;ID=intron_FBgn0259171:11_FBgn0259171:10;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19735	12,733,523 – 12,733,624	-	5	118	61.32	-1.58	0.42	0.915197
14336	dm3.chrX	12,733,523 – 12,733,627		19736	12,733,526 – 12,733,627	-	5	118	60.43	-1.49	0.44	0.939987
14337	dm3.chrX	12,741,419 – 12,741,568	- - - intron="intron;ID=intron_FBgn0259171:11_FBgn0259171:10;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19737	12,741,419 – 12,741,519	-	5	100	96.58	-1.39	0.92	0.589201
14337	dm3.chrX	12,741,419 – 12,741,568		19738	12,741,456 – 12,741,568	+	6	119	78.82	-2.45	0.51	0.935759
14338	dm3.chrX	12,752,684 – 12,752,763	- - - intron="intron;ID=intron_FBgn0259171:11_FBgn0259171:10;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19739	12,752,684 – 12,752,763	+	4	80	74.34	-1.87	0.67	0.927195
14339	dm3.chrX	12,764,449 – 12,764,662	- - - intron="intron;ID=intron_FBgn0259171:11_FBgn0259171:10;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19740	12,764,449 – 12,764,548	-	3	100	98.00	-1.61	0.91	0.627982
				19741	12,764,548 – 12,764,660	+	5	118	67.66	-2.08	0.36	0.848168
				19742	12,764,548 – 12,764,660	-	5	118	67.66	-2.47	0.53	0.997461
				19743	12,764,550 – 12,764,662	+	5	119	65.76	-2.14	0.36	0.923121
				19744	12,764,550 – 12,764,662	-	5	119	65.76	-2.45	0.43	0.992984
14340	dm3.chrX	12,765,856 – 12,766,008	- - - intron="intron;ID=intron_FBgn0259171:11_FBgn0259171:10;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19745	12,765,856 – 12,766,008	-	6	159	77.20	-2.65	0.59	0.990460
14341	dm3.chrX	12,766,057 – 12,766,159	- - - intron="intron;ID=intron_FBgn0259171:11_FBgn0259171:10;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19746	12,766,057 – 12,766,159	+	8	110	79.11	-2.28	0.40	0.575838
14341	dm3.chrX	12,766,057 – 12,766,159		19747	12,766,057 – 12,766,159	-	8	110	79.11	-1.86	0.52	0.683147
14342	dm3.chrX	12,770,360 – 12,770,460	- - - intron="intron;ID=intron_FBgn0259171:11_FBgn0259171:10;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19748	12,770,360 – 12,770,460	-	4	100	95.33	-2.10	0.83	0.735099
14343	dm3.chrX	12,775,481 – 12,775,571	- - - intron="intron;ID=intron_FBgn0259171:11_FBgn0259171:10;Name=Pde9-in;Parent=FBtr0299635,FBtr0300517;parent_type=mRNA" - - - -	19749	12,775,481 – 12,775,571	+	6	91	58.28	-0.56	0.47	0.563266
14344	dm3.chrX	12,783,009 – 12,783,112	- - - - - - - -	19750	12,783,009 – 12,783,112	-	6	105	75.29	-1.62	0.46	0.525477
14345	dm3.chrX	12,786,062 – 12,786,164	- - - - - - - -	19751	12,786,062 – 12,786,164	-	7	114	78.24	-1.67	0.57	0.559966
14346	dm3.chrX	12,807,473 – 12,807,545	- - - - - - - -	19752	12,807,473 – 12,807,545	+	8	77	84.95	-1.76	0.78	0.864917
14347	dm3.chrX	12,821,622 – 12,821,714	- - - - - - - -	19753	12,821,622 – 12,821,714	+	5	98	90.69	-1.68	0.80	0.529189
14348	dm3.chrX	12,829,858 – 12,829,965	- - - - - - - -	19754	12,829,858 – 12,829,965	-	4	107	50.64	-2.15	0.22	0.882289
14349	dm3.chrX	12,842,210 – 12,842,283	- - - - - - - -	19755	12,842,210 – 12,842,283	-	9	86	67.53	-0.96	0.51	0.771549
14350	dm3.chrX	12,847,871 – 12,847,943	- - - intron="intron;ID=intron_FBgn0030437:9_FBgn0030437:8;Name=CG4395-in;Parent=FBtr0073753;parent_type=mRNA" - - - -	19756	12,847,871 – 12,847,943	-	6	72	64.03	-0.87	0.57	0.939447
14351	dm3.chrX	12,851,479 – 12,851,592	- - - - - - - -	19757	12,851,479 – 12,851,592	-	6	113	70.07	-2.49	0.44	0.992003
14352	dm3.chrX	12,853,093 – 12,853,184	- - - - - - - -	19758	12,853,093 – 12,853,184	+	5	117	68.83	-1.40	0.55	0.762557
14353	dm3.chrX	12,860,351 – 12,860,449	- - - - - - - -	19759	12,860,351 – 12,860,449	+	5	102	92.18	-1.58	0.88	0.709520
14354	dm3.chrX	12,865,675 – 12,865,808	- - CDS="CDS;ID=CDS_FBgn0030438:3_1027;Name=CG15721-cds;Parent=FBtr0305600;parent_type=mRNA" - - - - -	19760	12,865,675 – 12,865,786	-	3	111	88.59	-2.09	0.86	0.920550
14354	dm3.chrX	12,865,675 – 12,865,808		19761	12,865,715 – 12,865,808	-	3	111	76.51	-1.62	0.79	0.850758
14355	dm3.chrX	12,869,334 – 12,869,424	- - CDS="CDS;ID=CDS_FBgn0030439:1_1027;Name=CG12716-cds;Parent=FBtr0073752;parent_type=mRNA" - - - - -	19762	12,869,334 – 12,869,424	+	7	99	60.03	-1.56	0.35	0.928708
14356	dm3.chrX	12,876,611 – 12,876,704	- - - - - - - -	19763	12,876,611 – 12,876,704	-	6	100	62.93	-1.06	0.39	0.507404
14357	dm3.chrX	12,884,100 – 12,884,199	- - - - - - - -	19764	12,884,100 – 12,884,199	+	6	118	69.21	-2.15	0.51	0.971688
14357	dm3.chrX	12,884,100 – 12,884,199	- - - - - - - -	19765	12,884,100 – 12,884,199	-	6	118	69.21	-2.43	0.32	0.735957
14358	dm3.chrX	12,885,318 – 12,885,396	- - - - - - - -	19766	12,885,318 – 12,885,396	+	9	78	84.87	-1.62	0.72	0.710685
14359	dm3.chrX	12,885,511 – 12,885,607	- - - - - - - -	19767	12,885,511 – 12,885,607	+	6	117	73.32	-2.27	0.43	0.844691
14359	dm3.chrX	12,885,511 – 12,885,607	- - - - - - - -	19768	12,885,511 – 12,885,607	-	6	117	73.32	-3.52	0.43	0.997036
14360	dm3.chrX	12,887,591 – 12,887,708	- - - - - - - -	19769	12,887,591 – 12,887,708	+	4	120	92.41	-1.77	0.85	0.699992
14361	dm3.chrX	12,887,775 – 12,887,870	- - - - - - - -	19770	12,887,775 – 12,887,870	+	3	97	88.24	-2.34	0.84	0.947837
14362	dm3.chrX	12,890,450 – 12,890,567	- - - - - - - -	19771	12,890,450 – 12,890,567	+	5	119	75.32	-1.70	0.50	0.663004
14362	dm3.chrX	12,890,450 – 12,890,567	- - - - - - - -	19772	12,890,450 – 12,890,567	-	5	119	75.32	-1.63	0.53	0.713058
14363	dm3.chrX	12,891,237 – 12,891,340	- - - - - - - -	19773	12,891,237 – 12,891,340	+	6	107	68.64	-1.21	0.42	0.516107
14364	dm3.chrX	12,893,711 – 12,893,785	- - - - - - - -	19774	12,893,711 – 12,893,785	+	9	90	74.61	-1.39	0.49	0.518318
14365	dm3.chrX	12,897,902 – 12,898,008	- - - - - - - -	19775	12,897,902 – 12,898,008	-	3	106	91.03	-1.68	0.86	0.670317
14366	dm3.chrX	12,899,933 – 12,900,043	- - - - - - - -	19776	12,899,933 – 12,900,043	-	6	117	68.62	-1.13	0.46	0.622912
14367	dm3.chrX	12,905,418 – 12,905,568	- - - - - - - -	19777	12,905,418 – 12,905,530	+	6	120	71.05	-1.86	0.60	0.983891
				19778	12,905,418 – 12,905,530	-	6	120	71.05	-1.37	0.66	0.953658
				19779	12,905,452 – 12,905,568	+	6	120	61.90	-2.60	0.44	0.999193
				19780	12,905,452 – 12,905,568	-	6	120	61.90	-1.17	0.50	0.962371
14368	dm3.chrX	12,915,574 – 12,915,629	- - - - - - - -	19781	12,915,574 – 12,915,629	+	4	55	95.45	-1.01	1.03	0.859943
14369	dm3.chrX	12,919,202 – 12,919,321	- - - - - - - -	19782	12,919,202 – 12,919,321	+	5	119	78.40	-1.25	0.66	0.542567
14370	dm3.chrX	12,922,415 – 12,922,518	- - - - - - - -	19783	12,922,415 – 12,922,518	-	6	107	79.53	-2.12	0.48	0.707925
14371	dm3.chrX	12,924,270 – 12,924,334	- - - - - - - -	19784	12,924,270 – 12,924,334	+	6	65	78.76	-2.03	0.59	0.925621
14371	dm3.chrX	12,924,270 – 12,924,334	- - - - - - - -	19785	12,924,270 – 12,924,334	-	6	65	78.76	-2.20	0.50	0.864094
14372	dm3.chrX	12,927,420 – 12,927,528	- - CDS="CDS;ID=CDS_FBgn0261351:4_937;Name=rad-cds;Parent=FBtr0302269;parent_type=mRNA" - - - - -	19786	12,927,420 – 12,927,528	+	8	111	70.68	-0.89	0.54	0.649256
14373	dm3.chrX	12,929,277 – 12,929,385	- - - - - - - -	19787	12,929,277 – 12,929,385	-	3	108	92.45	-1.88	0.91	0.892999
14374	dm3.chrX	12,935,068 – 12,935,133	- - - intron="intron;ID=intron_FBgn0261352:1_FBgn0261352:2;Name=CG42629-in;Parent=FBtr0302270;parent_type=mRNA" - - - -	19788	12,935,068 – 12,935,133	+	3	67	67.01	-1.64	0.58	0.817881
14374	dm3.chrX	12,935,068 – 12,935,133		19789	12,935,068 – 12,935,133	-	3	67	67.01	-1.24	0.67	0.760307
14375	dm3.chrX	12,937,121 – 12,937,230	- - - intron="intron;ID=intron_FBgn0261352:1_FBgn0261352:2;Name=CG42629-in;Parent=FBtr0302270;parent_type=mRNA" - - - -	19790	12,937,121 – 12,937,230	+	4	111	78.33	-1.62	0.70	0.744380
14376	dm3.chrX	12,956,085 – 12,956,190	FBnoncoding="pre_miRNA;ID=FBtr0304281;Name=mir-971-RM;Parent=FBgn0262222;Alias=CR42929-RM;Dbxref=FlyBase_Annotation_IDs:CR42929-RM,miRBase:MI0005828" - - - - - - "mirBase_v16=dme-mir-971\|4.1e-44"	19791	12,956,085 – 12,956,190	+	11	117	70.86	-2.65	0.68	0.999407
14376	dm3.chrX	12,956,085 – 12,956,190		19792	12,956,085 – 12,956,190	-	11	117	70.86	-1.09	0.61	0.906252
14377	dm3.chrX	12,956,321 – 12,956,414	- - - - - - - -	19793	12,956,321 – 12,956,414	+	5	96	86.52	-7.07	0.88	0.994812
14377	dm3.chrX	12,956,321 – 12,956,414	- - - - - - - -	19794	12,956,321 – 12,956,414	-	5	96	86.52	-4.70	0.94	0.999137
14378	dm3.chrX	12,983,553 – 12,983,643	- - CDS="CDS;ID=CDS_CG4353:1_917;Name=hep-cds;Parent=FBtr0073747;parent_type=mRNA" - - - - -	19795	12,983,553 – 12,983,643	+	7	103	67.80	-1.07	0.51	0.712659
14379	dm3.chrX	12,991,654 – 12,991,765	- - CDS="CDS;ID=CDS_CG4351:5_912;Name=CG4351-cds;Parent=FBtr0073746;parent_type=mRNA" - - - - -	19796	12,991,654 – 12,991,765	+	14	116	69.24	-0.93	0.40	0.541029
14380	dm3.chrX	12,996,219 – 12,996,354	- - - - - - - -	19797	12,996,219 – 12,996,354	+	4	138	84.61	-1.82	0.79	0.823212
14381	dm3.chrX	13,002,249 – 13,002,340	- - - - - - - -	19798	13,002,249 – 13,002,340	+	4	99	86.84	-1.72	0.83	0.789705
14382	dm3.chrX	13,008,862 – 13,008,919	- - - - - - - -	19799	13,008,862 – 13,008,919	+	7	74	55.52	-0.67	0.43	0.830319
14383	dm3.chrX	13,012,601 – 13,012,777	- - - intron="intron;ID=intron_CG4346:1_CG4346:2;Name=CG42237-in;Parent=FBtr0073722;parent_type=mRNA" - - - -	19800	13,012,601 – 13,012,718	+	6	120	65.94	-0.91	0.48	0.662669
				19801	13,012,678 – 13,012,777	+	5	99	86.14	-1.48	0.89	0.860819
				19802	13,012,678 – 13,012,777	-	5	99	86.14	-0.98	0.90	0.576039
14384	dm3.chrX	13,013,076 – 13,013,221	- - - intron="intron;ID=intron_CG4346:1_CG4346:2;Name=CG42237-in;Parent=FBtr0073722;parent_type=mRNA" - - - -	19803	13,013,076 – 13,013,221	-	3	148	75.29	-1.92	0.66	0.849789
14385	dm3.chrX	13,013,709 – 13,013,834	- - - intron="intron;ID=intron_CG4346:1_CG4346:2;Name=CG42237-in;Parent=FBtr0073722;parent_type=mRNA" - - - -	19804	13,013,709 – 13,013,799	+	5	96	84.15	-1.74	0.67	0.500000
				19805	13,013,709 – 13,013,799	-	5	96	84.15	-2.18	0.74	0.926790
				19806	13,013,734 – 13,013,834	+	6	110	77.91	-1.80	0.51	0.571883
14386	dm3.chrX	13,015,245 – 13,015,305	- - - intron="intron;ID=intron_CG4346:2_CG4346:3;Name=CG42237-in;Parent=FBtr0073722;parent_type=mRNA" - - - -	19807	13,015,245 – 13,015,305	-	5	60	68.67	-0.27	0.70	0.589788
14387	dm3.chrX	13,017,363 – 13,017,414	- - - - - - - -	19808	13,017,363 – 13,017,414	-	5	59	81.37	-1.21	0.80	0.600590
14388	dm3.chrX	13,019,975 – 13,020,077	- - - intron="intron;ID=intron_FBgn0052638:3_FBgn0052638:2;Name=CG32638-in;Parent=FBtr0300453;parent_type=mRNA" - - - -	19809	13,019,975 – 13,020,070	+	5	116	75.48	-2.06	0.61	0.938267
				19810	13,019,975 – 13,020,070	-	5	116	75.48	-1.79	0.61	0.850905
				19811	13,019,975 – 13,020,077	+	6	122	63.07	-1.70	0.31	0.606348
14389	dm3.chrX	13,027,927 – 13,028,026	- - CDS="CDS;ID=CDS_CG4330:2_893;Name=CG4330-cds;Parent=FBtr0073724;parent_type=mRNA" - - - - -	19812	13,027,927 – 13,028,026	+	15	117	72.69	-2.25	0.34	0.880016
14390	dm3.chrX	13,032,080 – 13,032,154	- - - - - - - -	19813	13,032,080 – 13,032,154	+	8	77	57.46	-2.97	0.01	0.500000
14390	dm3.chrX	13,032,080 – 13,032,154	- - - - - - - -	19814	13,032,080 – 13,032,154	-	8	77	57.46	-2.21	0.14	0.581565
14391	dm3.chrX	13,035,548 – 13,035,638	- - - intron="intron;ID=intron_CG32645:1_CG32645:2;Name=CG32645-in;Parent=FBtr0073725;parent_type=mRNA" - - - -	19815	13,035,548 – 13,035,638	+	5	90	66.56	-1.25	0.43	0.636071
14392	dm3.chrX	13,042,169 – 13,042,283	- - - intron="intron;ID=intron_CG32645:1_CG32645:2;Name=CG32645-in;Parent=FBtr0073725;parent_type=mRNA" - - - -	19816	13,042,169 – 13,042,283	+	4	120	77.92	-2.13	0.50	0.612931
14393	dm3.chrX	13,043,134 – 13,043,231	- - - intron="intron;ID=intron_CG32645:1_CG32645:2;Name=CG32645-in;Parent=FBtr0073725;parent_type=mRNA" - - - -	19817	13,043,134 – 13,043,231	+	5	97	68.32	-2.28	0.42	0.980032
14393	dm3.chrX	13,043,134 – 13,043,231		19818	13,043,134 – 13,043,231	-	5	97	68.32	-1.87	0.37	0.797570
14394	dm3.chrX	13,044,042 – 13,044,137	- - CDS="CDS;ID=CDS_CG32645:2_925;Name=CG32645-cds;Parent=FBtr0073725;parent_type=mRNA" - - - - -	19819	13,044,042 – 13,044,137	-	10	110	67.52	-1.43	0.36	0.609409
14395	dm3.chrX	13,048,973 – 13,049,066	- - - - - - - -	19820	13,048,973 – 13,049,066	-	4	99	81.72	-2.05	0.65	0.740168
14396	dm3.chrX	13,051,148 – 13,051,240	- - - - - - - -	19821	13,051,148 – 13,051,240	+	4	106	79.56	-1.36	0.75	0.658990
14397	dm3.chrX	13,075,897 – 13,075,980	- - - - - - - -	19822	13,075,897 – 13,075,980	+	6	85	66.88	-0.88	0.50	0.777959
14398	dm3.chrX	13,080,889 – 13,080,985	- - - - - - - -	19823	13,080,889 – 13,080,985	-	5	110	76.06	-1.38	0.63	0.724494
14399	dm3.chrX	13,099,188 – 13,099,278	- - - intron="intron;ID=intron_FBgn0005410:14_FBgn0005410:13;Name=sno-in;Parent=FBtr0073736,FBtr0112848,FBtr0112849;parent_type=mRNA" - - - -	19824	13,099,188 – 13,099,278	+	3	107	79.44	-2.20	0.56	0.603889
14400	dm3.chrX	13,102,432 – 13,102,514	- - - intron="intron;ID=intron_FBgn0005410:15_FBgn0005410:14;Name=sno-in;Parent=FBtr0073735,FBtr0073736,FBtr0112848,FBtr0112849;parent_type=mRNA" - - - -	19825	13,102,432 – 13,102,514	-	6	90	65.50	-1.34	0.40	0.742985
14401	dm3.chrX	13,103,938 – 13,104,034	- - - intron="intron;ID=intron_FBgn0005410:15_FBgn0005410:14;Name=sno-in;Parent=FBtr0073735,FBtr0073736,FBtr0112848,FBtr0112849;parent_type=mRNA" - - - -	19826	13,103,938 – 13,104,034	+	6	101	73.13	-1.47	0.61	0.911634
14401	dm3.chrX	13,103,938 – 13,104,034		19827	13,103,938 – 13,104,034	-	6	101	73.13	-1.72	0.47	0.762105
14402	dm3.chrX	13,113,007 – 13,113,095	- - - intron="intron;ID=intron_FBgn0004456:6_FBgn0004456:5;Name=mew-in;Parent=FBtr0073731,FBtr0073732;parent_type=mRNA" - - - -	19828	13,113,007 – 13,113,095	+	5	97	87.35	-1.99	0.71	0.626912
14403	dm3.chrX	13,121,158 – 13,121,254	- - - intron="intron;ID=intron_FBgn0004456:9_FBgn0004456:8;Name=mew-in;Parent=FBtr0073731;parent_type=mRNA" - - - -	19829	13,121,158 – 13,121,254	+	3	109	81.48	-2.97	0.61	0.965450
14403	dm3.chrX	13,121,158 – 13,121,254		19830	13,121,158 – 13,121,254	-	3	109	81.48	-2.47	0.55	0.681206
14404	dm3.chrX	13,121,574 – 13,121,675	- - - intron="intron;ID=intron_FBgn0004456:9_FBgn0004456:8;Name=mew-in;Parent=FBtr0073731;parent_type=mRNA" - - - -	19831	13,121,574 – 13,121,675	-	5	119	73.22	-1.36	0.67	0.768166
14405	dm3.chrX	13,127,824 – 13,127,917	- - - intron="intron;ID=intron_FBgn0004456:9_FBgn0004456:8;Name=mew-in;Parent=FBtr0073731;parent_type=mRNA" - - - -	19832	13,127,824 – 13,127,917	+	5	93	86.32	-2.21	0.80	0.951860
14406	dm3.chrX	13,129,034 – 13,129,111	- - - intron="intron;ID=intron_FBgn0004456:9_FBgn0004456:8;Name=mew-in;Parent=FBtr0073731;parent_type=mRNA" - - - -	19833	13,129,034 – 13,129,111	-	8	86	72.67	-1.07	0.57	0.718966
14407	dm3.chrX	13,134,072 – 13,134,163	- - - intron="intron;ID=intron_FBgn0004456:11_FBgn0004456:9;Name=mew-in;Parent=FBtr0073731;parent_type=mRNA" - - - -	19834	13,134,072 – 13,134,163	-	3	91	97.79	-1.41	0.92	0.532526
14408	dm3.chrX	13,139,707 – 13,139,802	- - - intron="intron;ID=intron_FBgn0004456:11_FBgn0004456:9;Name=mew-in;Parent=FBtr0073731;parent_type=mRNA" - - - -	19835	13,139,707 – 13,139,802	+	4	120	71.78	-2.52	0.65	0.992375
14408	dm3.chrX	13,139,707 – 13,139,802		19836	13,139,707 – 13,139,802	-	4	120	71.78	-1.05	0.70	0.591894
14409	dm3.chrX	13,148,886 – 13,148,985	- - - intron="intron;ID=intron_FBgn0004456:11_FBgn0004456:9;Name=mew-in;Parent=FBtr0073731;parent_type=mRNA" - - - -	19837	13,148,886 – 13,148,985	-	4	120	79.00	-2.27	0.63	0.899027
14410	dm3.chrX	13,168,417 – 13,168,483	- - - - - - - -	19838	13,168,417 – 13,168,483	+	6	72	90.39	-2.33	0.78	0.903078
14411	dm3.chrX	13,175,278 – 13,175,374	- - - intron="intron;ID=intron_FBgn0041210:14_FBgn0041210:13;Name=HDAC4-in;Parent=FBtr0301298,FBtr0301299;parent_type=mRNA" - - - -	19839	13,175,278 – 13,175,374	+	4	100	88.40	-1.59	0.82	0.613998
14411	dm3.chrX	13,175,278 – 13,175,374		19840	13,175,278 – 13,175,374	-	4	100	88.40	-3.18	0.80	0.992875
14412	dm3.chrX	13,177,415 – 13,177,466	- - - intron="intron;ID=intron_FBgn0041210:15_FBgn0041210:14;Name=HDAC4-in;Parent=FBtr0301298,FBtr0301299;parent_type=mRNA" - - - -	19841	13,177,415 – 13,177,466	+	7	55	65.18	-0.78	0.45	0.618058
14413	dm3.chrX	13,177,959 – 13,178,046	- - - intron="intron;ID=intron_FBgn0041210:15_FBgn0041210:14;Name=HDAC4-in;Parent=FBtr0301298,FBtr0301299;parent_type=mRNA" - - - -	19842	13,177,959 – 13,178,046	+	6	89	81.29	-1.93	0.52	0.517554
14414	dm3.chrX	13,182,250 – 13,182,346	- - - - - - - -	19843	13,182,250 – 13,182,346	+	5	105	65.10	-2.09	0.57	0.994820
14415	dm3.chrX	13,195,517 – 13,195,645	- - - - - - - -	19844	13,195,517 – 13,195,607	-	3	94	65.47	-1.36	0.50	0.526843
14415	dm3.chrX	13,195,517 – 13,195,645	- - - - - - - -	19845	13,195,541 – 13,195,645	-	5	104	61.80	-1.33	0.34	0.521208
14416	dm3.chrX	13,195,845 – 13,195,936	- - - - - - - -	19846	13,195,845 – 13,195,936	+	4	95	71.15	-3.32	0.51	0.998535
14416	dm3.chrX	13,195,845 – 13,195,936	- - - - - - - -	19847	13,195,845 – 13,195,936	-	4	95	71.15	-4.19	0.43	0.999501
14417	dm3.chrX	13,207,311 – 13,207,451	- - - - - - - -	19848	13,207,311 – 13,207,421	+	7	120	74.98	-1.89	0.41	0.616416
14417	dm3.chrX	13,207,311 – 13,207,451	- - - - - - - -	19849	13,207,346 – 13,207,451	-	6	114	77.44	-1.11	0.63	0.500000
14418	dm3.chrX	13,223,843 – 13,223,906	- - - - - - - -	19850	13,223,843 – 13,223,906	+	9	75	62.88	-1.05	0.37	0.517347
14419	dm3.chrX	13,225,752 – 13,225,855	- - - - - - - -	19851	13,225,752 – 13,225,855	+	7	117	60.96	-1.18	0.44	0.917003
14420	dm3.chrX	13,230,356 – 13,230,447	- - - - - - - -	19852	13,230,356 – 13,230,447	-	14	97	70.43	-0.36	0.62	0.864879
14421	dm3.chrX	13,242,549 – 13,242,639	- - - - - - - -	19853	13,242,549 – 13,242,639	+	7	96	66.02	-0.84	0.61	0.939644
14422	dm3.chrX	13,242,824 – 13,242,904	- - - - - - - -	19854	13,242,824 – 13,242,904	-	3	94	81.21	-2.79	0.63	0.957557
14423	dm3.chrX	13,245,182 – 13,245,300	- - - - - - - -	19855	13,245,182 – 13,245,300	+	5	120	95.68	-2.63	0.95	0.989084
14423	dm3.chrX	13,245,182 – 13,245,300	- - - - - - - -	19856	13,245,182 – 13,245,300	-	5	120	95.68	-1.74	0.91	0.805721
14424	dm3.chrX	13,247,650 – 13,247,737	- - - - - - - -	19857	13,247,650 – 13,247,737	+	6	91	85.42	-1.90	0.67	0.655086
14424	dm3.chrX	13,247,650 – 13,247,737	- - - - - - - -	19858	13,247,650 – 13,247,737	-	6	91	85.42	-1.76	0.68	0.565133
14425	dm3.chrX	13,247,763 – 13,247,815	- - - - - - - -	19859	13,247,763 – 13,247,815	+	6	59	90.80	-2.41	0.71	0.791342
14425	dm3.chrX	13,247,763 – 13,247,815	- - - - - - - -	19860	13,247,763 – 13,247,815	-	6	59	90.80	-3.05	0.67	0.947967
14426	dm3.chrX	13,257,059 – 13,257,118	- - - intron="intron;ID=intron_CG10617:1_CG10617:2;Name=Syt12-in;Parent=FBtr0073767;parent_type=mRNA" - - - -	19861	13,257,059 – 13,257,118	-	9	71	74.53	-2.35	0.44	0.946430
14427	dm3.chrX	13,267,230 – 13,267,325	- - - intron="intron;ID=intron_CG1640:13_CG1640:2;Name=CG1640-in;Parent=FBtr0073774;parent_type=mRNA" - - - -	19862	13,267,230 – 13,267,325	-	4	114	69.23	-2.06	0.58	0.969338
14428	dm3.chrX	13,271,166 – 13,271,225	- - - intron="intron;ID=intron_CG1640:3_CG1640:4;Name=CG1640-in;Parent=FBtr0073769,FBtr0073770,FBtr0073771,FBtr0073772,FBtr0073773,FBtr0073774;parent_type=mRNA" - - - -	19863	13,271,166 – 13,271,225	+	5	59	63.64	-1.24	0.50	0.903139
14429	dm3.chrX	13,279,412 – 13,279,463	- - - - - - - -	19864	13,279,412 – 13,279,463	-	5	51	67.65	-0.42	0.73	0.779059
14430	dm3.chrX	13,285,315 – 13,285,425	- - - - - - - -	19865	13,285,315 – 13,285,425	+	6	135	50.50	-1.75	0.27	0.908848
14430	dm3.chrX	13,285,315 – 13,285,425	- - - - - - - -	19866	13,285,315 – 13,285,425	-	6	135	50.50	-1.82	0.24	0.859624
14431	dm3.chrX	13,288,919 – 13,289,059	- - - - - - - -	19867	13,288,919 – 13,289,059	+	3	143	84.83	-1.70	0.84	0.810588
14431	dm3.chrX	13,288,919 – 13,289,059	- - - - - - - -	19868	13,288,919 – 13,289,059	-	3	143	84.83	-2.97	0.75	0.984883
14432	dm3.chrX	13,291,996 – 13,292,141	- - - intron="intron;ID=intron_CG1673:1_CG1673:2;Name=CG1673-in;Parent=FBtr0073777;parent_type=mRNA" - - - -	19869	13,291,996 – 13,292,105	+	7	113	70.24	-2.65	0.48	0.996155
				19870	13,291,996 – 13,292,105	-	7	113	70.24	-2.69	0.40	0.987537
				19871	13,292,042 – 13,292,141	-	6	112	72.87	-1.67	0.45	0.659102
14433	dm3.chrX	13,297,143 – 13,297,248	- - - - - - - -	19872	13,297,143 – 13,297,248	+	3	105	78.71	-1.63	0.71	0.624962
14434	dm3.chrX	13,299,720 – 13,299,853	- - - intron="intron;ID=intron_CG1681:1_CG1681:2;Name=CG1681-in;Parent=FBtr0073778;parent_type=mRNA" - - - -	19873	13,299,720 – 13,299,853	-	4	154	63.55	-2.30	0.32	0.747919
14435	dm3.chrX	13,300,546 – 13,300,619	- - - intron="intron;ID=intron_CG1681:1_CG1681:2;Name=CG1681-in;Parent=FBtr0073778;parent_type=mRNA" - - - -	19874	13,300,546 – 13,300,619	-	7	80	80.85	-1.68	0.68	0.832473
14436	dm3.chrX	13,301,780 – 13,301,957	- - - intron="intron;ID=intron_CG1681:1_CG1681:2;Name=CG1681-in;Parent=FBtr0073778;parent_type=mRNA" - - - -	19875	13,301,780 – 13,301,884	-	3	104	88.46	-1.89	0.83	0.800529
14436	dm3.chrX	13,301,780 – 13,301,957		19876	13,301,848 – 13,301,957	-	6	114	67.92	-1.40	0.38	0.529014
14437	dm3.chrX	13,304,832 – 13,304,927	- - - intron="intron;ID=intron_FBgn0030485:5_FBgn0030485:3;Name=CG1998-in;Parent=FBtr0301560;parent_type=mRNA" - - - -	19877	13,304,832 – 13,304,927	-	6	96	61.33	-1.00	0.43	0.733551
14438	dm3.chrX	13,317,233 – 13,317,328	- - - - - - - -	19878	13,317,233 – 13,317,328	+	3	95	52.28	-1.74	0.45	0.981068
14438	dm3.chrX	13,317,233 – 13,317,328	- - - - - - - -	19879	13,317,233 – 13,317,328	-	3	95	52.28	-1.62	0.50	0.987531
14439	dm3.chrX	13,325,444 – 13,325,534	- - - - - - - -	19880	13,325,444 – 13,325,534	+	5	95	78.93	-2.25	0.45	0.561305
14440	dm3.chrX	13,332,635 – 13,332,749	- - - - - - - -	19881	13,332,635 – 13,332,749	+	3	114	84.80	-1.79	0.83	0.820151
14441	dm3.chrX	13,338,922 – 13,339,037	- - - - - - - -	19882	13,338,922 – 13,339,037	+	6	118	75.32	-1.47	0.63	0.878626
14442	dm3.chrX	13,341,848 – 13,341,905	- - - intron="intron;ID=intron_CG32635:1_CG32635:2;Name=CG32635-in;Parent=FBtr0073780;parent_type=mRNA" - - - -	19883	13,341,848 – 13,341,905	+	5	61	88.05	-2.01	0.69	0.541928
14443	dm3.chrX	13,367,987 – 13,368,056	- - - - - - - -	19884	13,367,987 – 13,368,056	-	7	72	73.02	-0.99	0.70	0.913246
14444	dm3.chrX	13,374,088 – 13,374,212	- - - - - - - -	19885	13,374,088 – 13,374,195	-	12	119	85.96	-1.60	0.78	0.801529
				19886	13,374,121 – 13,374,212	+	11	97	87.11	-1.88	0.87	0.958320
				19887	13,374,121 – 13,374,212	-	11	97	87.11	-1.91	0.81	0.930353
14445	dm3.chrX	13,376,285 – 13,376,363	- - - - - - - -	19888	13,376,285 – 13,376,363	-	6	78	80.18	-1.22	0.74	0.638602
14446	dm3.chrX	13,398,820 – 13,398,918	- - - intron="intron;ID=intron_CG32635:9_CG32635:10;Name=CG32635-in;Parent=FBtr0073780;parent_type=mRNA" - - - -	19889	13,398,820 – 13,398,918	+	7	98	90.17	-2.06	0.74	0.684903
14447	dm3.chrX	13,404,333 – 13,404,423	- - - intron="intron;ID=intron_CG32635:10_CG32635:11;Name=CG32635-in;Parent=FBtr0073780;parent_type=mRNA" - - - -	19890	13,404,333 – 13,404,423	-	6	95	65.80	-1.74	0.31	0.525087
14448	dm3.chrX	13,415,803 – 13,415,899	- - - intron="intron;ID=intron_FBgn0030491:2_FBgn0030491:3;Name=CG15753-in;Parent=FBtr0273441;parent_type=mRNA" - - - -	19891	13,415,803 – 13,415,899	-	5	117	79.07	-3.30	0.63	0.996468
14449	dm3.chrX	13,421,152 – 13,421,252	- - - - - - - -	19892	13,421,152 – 13,421,252	+	3	101	70.65	-2.06	0.51	0.753592
14450	dm3.chrX	13,422,251 – 13,422,359	- - CDS="CDS;ID=CDS_FBgn0030492:1_1005;Name=CG15754-cds;Parent=FBtr0073782;parent_type=mRNA" - - - - -	19893	13,422,251 – 13,422,359	-	10	118	71.74	-1.22	0.43	0.567080
14451	dm3.chrX	13,427,257 – 13,427,381	- - - - - - - -	19894	13,427,257 – 13,427,381	-	4	125	82.27	-1.26	0.81	0.578694
14452	dm3.chrX	13,428,169 – 13,428,235	- - - - - - - -	19895	13,428,169 – 13,428,235	+	5	70	70.12	-1.77	0.57	0.967943
14453	dm3.chrX	13,432,676 – 13,432,743	- - - - - - - -	19896	13,432,676 – 13,432,743	+	6	80	73.36	-1.55	0.59	0.849877
14453	dm3.chrX	13,432,676 – 13,432,743	- - - - - - - -	19897	13,432,676 – 13,432,743	-	6	80	73.36	-2.22	0.66	0.991490
14454	dm3.chrX	13,444,418 – 13,444,507	- - - - - - - -	19898	13,444,418 – 13,444,507	+	3	89	86.47	-1.64	0.79	0.532193
14455	dm3.chrX	13,461,007 – 13,461,097	- - - intron="intron;ID=intron_FBgn0052632:1_FBgn0052632:2;Name=Tango13-in;Parent=FBtr0113443;parent_type=mRNA" - - - -	19899	13,461,007 – 13,461,097	-	5	114	72.40	-1.01	0.65	0.587138
14456	dm3.chrX	13,463,668 – 13,463,771	- - - intron="intron;ID=intron_FBgn0052632:1_FBgn0052632:2;Name=Tango13-in;Parent=FBtr0113443;parent_type=mRNA" - - - -	19900	13,463,668 – 13,463,771	-	4	120	73.72	-1.87	0.51	0.677649
14457	dm3.chrX	13,464,408 – 13,464,512	- - - intron="intron;ID=intron_FBgn0052632:1_FBgn0052632:2;Name=Tango13-in;Parent=FBtr0113443;parent_type=mRNA" - - - -	19901	13,464,408 – 13,464,512	+	3	106	75.08	-1.66	0.61	0.514430
14458	dm3.chrX	13,465,381 – 13,465,497	- - - intron="intron;ID=intron_FBgn0052632:1_FBgn0052632:2;Name=Tango13-in;Parent=FBtr0113443;parent_type=mRNA" - - - -	19902	13,465,381 – 13,465,495	-	5	120	87.49	-1.88	0.90	0.947170
14458	dm3.chrX	13,465,381 – 13,465,497		19903	13,465,383 – 13,465,497	-	5	120	87.83	-1.92	0.90	0.950404
14459	dm3.chrX	13,465,875 – 13,465,948	- - - intron="intron;ID=intron_FBgn0052632:1_FBgn0052632:2;Name=Tango13-in;Parent=FBtr0113443;parent_type=mRNA" - - - -	19904	13,465,875 – 13,465,948	-	6	81	60.88	-1.88	0.27	0.789502
14460	dm3.chrX	13,469,055 – 13,469,174	- - - intron="intron;ID=intron_FBgn0052632:1_FBgn0052632:2;Name=Tango13-in;Parent=FBtr0113443;parent_type=mRNA" - - - -	19905	13,469,055 – 13,469,174	+	6	120	76.09	-1.42	0.54	0.599422
14461	dm3.chrX	13,476,540 – 13,476,597	- - - intron="intron;ID=intron_FBgn0052632:5_FBgn0052632:6;Name=Tango13-in;Parent=FBtr0073803,FBtr0113443;parent_type=mRNA" - - - -	19906	13,476,540 – 13,476,597	+	4	57	97.37	-2.11	0.90	0.884579
14461	dm3.chrX	13,476,540 – 13,476,597		19907	13,476,540 – 13,476,597	-	4	57	97.37	-2.45	0.98	0.987420
14462	dm3.chrX	13,477,058 – 13,477,158	- - - intron="intron;ID=intron_FBgn0052632:5_FBgn0052632:6;Name=Tango13-in;Parent=FBtr0073803,FBtr0113443;parent_type=mRNA" - - - -	19908	13,477,058 – 13,477,158	-	6	111	76.59	-1.70	0.50	0.573577
14463	dm3.chrX	13,481,053 – 13,481,183	- - - intron="intron;ID=intron_FBgn0052632:10_FBgn0052632:12;Name=Tango13-in;Parent=FBtr0073803;parent_type=mRNA" - - - -	19909	13,481,053 – 13,481,168	-	6	118	67.30	-2.10	0.39	0.961727
14463	dm3.chrX	13,481,053 – 13,481,183		19910	13,481,091 – 13,481,183	-	5	95	79.02	-2.62	0.68	0.987966
14464	dm3.chrX	13,485,151 – 13,485,245	- - - - - - - -	19911	13,485,151 – 13,485,245	+	6	109	70.08	-1.93	0.38	0.659436
14465	dm3.chrX	13,511,782 – 13,511,834	- - - intron="intron;ID=intron_CG11176:1_CG11176:2;Name=Tango2-in;Parent=FBtr0073807;parent_type=mRNA" - - - -	19912	13,511,782 – 13,511,834	+	4	52	86.73	0.03	1.13	0.750457
14466	dm3.chrX	13,514,678 – 13,514,773	- - CDS="CDS;ID=CDS_CG2691:7_899;Name=CG2691-cds;Parent=FBtr0073848;parent_type=mRNA" - - - - -	19913	13,514,678 – 13,514,773	+	7	102	67.14	-1.33	0.38	0.554096
14467	dm3.chrX	13,531,443 – 13,531,544	- - - intron="intron;ID=intron_FBgn0030505:1_FBgn0030505:4;Name=NFAT-in;Parent=FBtr0073808,FBtr0301450;parent_type=mRNA" - - - -	19914	13,531,443 – 13,531,544	-	4	114	54.24	-1.20	0.33	0.507210
14468	dm3.chrX	13,534,032 – 13,534,098	- - - intron="intron;ID=intron_FBgn0030505:1_FBgn0030505:4;Name=NFAT-in;Parent=FBtr0073808,FBtr0301450;parent_type=mRNA" - - - -	19915	13,534,032 – 13,534,098	-	7	70	65.83	-1.11	0.43	0.714693
14469	dm3.chrX	13,535,366 – 13,535,477	- - - intron="intron;ID=intron_FBgn0030505:1_FBgn0030505:4;Name=NFAT-in;Parent=FBtr0073808,FBtr0301450;parent_type=mRNA" - - - -	19916	13,535,366 – 13,535,477	-	6	120	88.26	-1.83	0.81	0.828370
14470	dm3.chrX	13,540,800 – 13,540,905	- - - intron="intron;ID=intron_FBgn0030505:3_FBgn0030505:4;Name=NFAT-in;Parent=FBtr0301451;parent_type=mRNA" - - - -	19917	13,540,800 – 13,540,905	-	4	105	75.72	-2.25	0.51	0.827219
14471	dm3.chrX	13,541,777 – 13,541,870	- - - intron="intron;ID=intron_FBgn0030505:3_FBgn0030505:4;Name=NFAT-in;Parent=FBtr0301451;parent_type=mRNA" - - - -	19918	13,541,777 – 13,541,870	-	5	121	63.35	-0.81	0.55	0.686446
14472	dm3.chrX	13,543,195 – 13,543,337	- - - intron="intron;ID=intron_FBgn0030505:3_FBgn0030505:4;Name=NFAT-in;Parent=FBtr0301451;parent_type=mRNA" - - - -	19919	13,543,195 – 13,543,337	-	5	147	87.46	-1.91	0.82	0.865642
14473	dm3.chrX	13,543,443 – 13,543,562	- - CDS="CDS;ID=CDS_FBgn0030505:4_975;Name=NFAT-cds;Parent=FBtr0301451;parent_type=mRNA" - - - - -	19920	13,543,443 – 13,543,562	+	12	119	76.03	-1.48	0.65	0.964495
14474	dm3.chrX	13,552,133 – 13,552,223	- - CDS="CDS;ID=CDS_FBgn0030505:11_975;Name=NFAT-cds;Parent=FBtr0301451;parent_type=mRNA" - - - - -	19921	13,552,133 – 13,552,223	+	7	120	87.40	-2.72	1.00	0.997174
14475	dm3.chrX	13,556,364 – 13,556,414	- - CDS="CDS;ID=CDS_FBgn0030505:12_959;Name=NFAT-cds;Parent=FBtr0301449;parent_type=mRNA" - - - - -	19922	13,556,364 – 13,556,414	-	3	50	86.67	-1.54	0.82	0.563980
14476	dm3.chrX	13,563,335 – 13,563,406	- - - - - - - -	19923	13,563,335 – 13,563,406	+	4	76	67.34	-2.16	0.62	0.994500
14476	dm3.chrX	13,563,335 – 13,563,406	- - - - - - - -	19924	13,563,335 – 13,563,406	-	4	76	67.34	-0.94	0.77	0.914441
14477	dm3.chrX	13,578,152 – 13,578,204	- - - - - - - -	19925	13,578,152 – 13,578,204	-	5	53	83.78	-1.96	0.60	0.511682
14478	dm3.chrX	13,582,134 – 13,582,232	- - - - - - - -	19926	13,582,134 – 13,582,232	-	13	110	62.14	-0.50	0.45	0.726189
14479	dm3.chrX	13,583,976 – 13,584,073	- - - intron="intron;ID=intron_CG9940:2_CG9940:3;Name=CG9940-in;Parent=FBtr0073844,FBtr0073845;parent_type=mRNA" - - - -	19927	13,583,976 – 13,584,073	-	7	110	58.07	-2.33	0.22	0.921093
14480	dm3.chrX	13,588,331 – 13,588,463	- - - intron="intron;ID=intron_FBgn0052627:1_FBgn0052627:6;Name=NnaD-in;Parent=FBtr0304971;parent_type=mRNA" - - - -	19928	13,588,331 – 13,588,423	-	5	97	74.71	-1.99	0.66	0.978678
14480	dm3.chrX	13,588,331 – 13,588,463		19929	13,588,361 – 13,588,463	+	5	104	67.83	-1.51	0.48	0.870434
14481	dm3.chrX	13,588,915 – 13,589,080	- - - intron="intron;ID=intron_FBgn0052627:1_FBgn0052627:6;Name=NnaD-in;Parent=FBtr0304971;parent_type=mRNA" - - - -	19930	13,588,915 – 13,589,014	+	5	102	81.26	-2.30	0.58	0.884813
14481	dm3.chrX	13,588,915 – 13,589,080		19931	13,588,978 – 13,589,080	-	5	105	80.06	-0.88	0.85	0.592324
14482	dm3.chrX	13,606,587 – 13,606,639	- - - intron="intron;ID=intron_FBgn0052627:12_FBgn0052627:13;Name=NnaD-in;Parent=FBtr0073813,FBtr0073814,FBtr0073815,FBtr0113441,FBtr0304971,FBtr0304972,FBtr0304973;parent_type=mRNA" - - - -	19932	13,606,587 – 13,606,639	+	3	52	90.38	-0.50	1.11	0.907821
14483	dm3.chrX	13,607,310 – 13,607,427	- - CDS="CDS;ID=CDS_FBgn0052627:15_1026;Name=NnaD-cds;Parent=FBtr0113441;parent_type=mRNA" - - - - -	19933	13,607,310 – 13,607,409	+	13	114	67.37	-0.86	0.44	0.738480
14483	dm3.chrX	13,607,310 – 13,607,427		19934	13,607,328 – 13,607,427	+	9	110	62.27	-0.64	0.43	0.624459
14484	dm3.chrX	13,614,402 – 13,614,473	- - - intron="intron;ID=intron_CG9941:1_CG9941:2;Name=CG9941-in;Parent=FBtr0073843;parent_type=mRNA" - - - -	19935	13,614,402 – 13,614,473	-	11	73	50.88	-0.42	0.36	0.514464
14485	dm3.chrX	13,618,002 – 13,618,096	- - CDS="CDS;ID=CDS_CG11156:1_921;Name=mus101-cds;Parent=FBtr0073817;parent_type=mRNA" - - - - -	19936	13,618,002 – 13,618,096	+	7	112	73.48	-1.20	0.69	0.838873
14486	dm3.chrX	13,620,443 – 13,620,545	- - CDS="CDS;ID=CDS_CG11156:1_921;Name=mus101-cds;Parent=FBtr0073817;parent_type=mRNA" - - - - -	19937	13,620,443 – 13,620,545	+	13	119	63.40	-1.45	0.32	0.755191
14487	dm3.chrX	13,622,021 – 13,622,143	- - - - - - - -	19938	13,622,021 – 13,622,115	+	11	111	64.47	-0.96	0.38	0.538214
14487	dm3.chrX	13,622,021 – 13,622,143	- - - - - - - -	19939	13,622,051 – 13,622,143	+	10	105	64.83	-1.53	0.33	0.704992
14488	dm3.chrX	13,628,219 – 13,628,478	- - - intron="intron;ID=intron_CG10986:2_CG10986:3;Name=g-in;Parent=FBtr0073842;parent_type=mRNA" - - - -	19940	13,628,219 – 13,628,337	+	3	118	54.31	-1.28	0.40	0.618644
				19941	13,628,219 – 13,628,337	-	3	118	54.31	-1.03	0.46	0.677961
				19942	13,628,337 – 13,628,456	+	7	120	62.20	-0.67	0.45	0.739309
				19943	13,628,377 – 13,628,478	+	6	119	70.60	-0.96	0.53	0.540180
14489	dm3.chrX	13,629,857 – 13,629,954	- - - intron="intron;ID=intron_CG10986:1_CG10986:2;Name=g-in;Parent=FBtr0073842;parent_type=mRNA" - - - -	19944	13,629,857 – 13,629,954	-	7	107	66.94	-1.49	0.38	0.706056
14490	dm3.chrX	13,630,851 – 13,630,948	- - - - - - - -	19945	13,630,851 – 13,630,943	+	4	114	84.26	-2.21	0.73	0.875661
14490	dm3.chrX	13,630,851 – 13,630,948	- - - - - - - -	19946	13,630,857 – 13,630,948	+	4	114	81.99	-2.11	0.79	0.944714
14491	dm3.chrX	13,652,909 – 13,653,008	- - - - - - - -	19947	13,652,909 – 13,653,008	+	6	117	66.81	-0.66	0.58	0.729458
14492	dm3.chrX	13,680,678 – 13,680,805	- - - intron="intron;ID=intron_FBgn0053174:3_FBgn0053174:4;Name=inaE-in;Parent=FBtr0073825,FBtr0073826,FBtr0290302,FBtr0290303;parent_type=mRNA" - - - -	19948	13,680,678 – 13,680,805	-	3	127	92.13	-2.69	0.81	0.947746
14493	dm3.chrX	13,681,677 – 13,681,813	- - - intron="intron;ID=intron_FBgn0053174:3_FBgn0053174:4;Name=inaE-in;Parent=FBtr0073825,FBtr0073826,FBtr0290302,FBtr0290303;parent_type=mRNA" - - - -	19949	13,681,677 – 13,681,773	-	4	108	66.34	-1.50	0.44	0.542958
14493	dm3.chrX	13,681,677 – 13,681,813		19950	13,681,714 – 13,681,813	+	5	105	82.00	-2.47	0.46	0.584954
14494	dm3.chrX	13,681,978 – 13,682,034	- - - intron="intron;ID=intron_FBgn0053174:3_FBgn0053174:4;Name=inaE-in;Parent=FBtr0073825,FBtr0073826,FBtr0290302,FBtr0290303;parent_type=mRNA" - - - -	19951	13,681,978 – 13,682,034	+	6	56	78.93	-1.94	0.67	0.955646
14495	dm3.chrX	13,688,715 – 13,688,792	- - - - - - - -	19952	13,688,715 – 13,688,792	-	6	77	91.00	-2.34	0.79	0.913199
14496	dm3.chrX	13,689,156 – 13,689,276	- - - - - - - -	19953	13,689,156 – 13,689,276	+	5	120	76.18	-1.67	0.50	0.560258
14497	dm3.chrX	13,695,421 – 13,695,557	- - - - - - - -	19954	13,695,421 – 13,695,515	+	6	110	65.04	-3.85	0.62	0.999946
				19955	13,695,421 – 13,695,515	-	6	110	65.04	-3.60	0.66	0.999925
				19956	13,695,453 – 13,695,553	+	6	119	48.35	-3.52	0.38	0.999968
				19957	13,695,453 – 13,695,553	-	6	119	48.35	-4.35	0.32	0.999983
				19958	13,695,457 – 13,695,557	+	7	115	52.09	-3.96	0.49	0.999994
				19959	13,695,457 – 13,695,557	-	7	115	52.09	-4.89	0.46	0.999996
14498	dm3.chrX	13,709,106 – 13,709,203	- - - intron="intron;ID=intron_CG10997:1_CG10997:2;Name=Clic-in;Parent=FBtr0073835;parent_type=mRNA" - - - -	19960	13,709,106 – 13,709,203	+	7	110	74.64	-1.63	0.46	0.568378
14499	dm3.chrX	13,709,870 – 13,709,969	- - - intron="intron;ID=intron_CG10997:1_CG10997:2;Name=Clic-in;Parent=FBtr0073835;parent_type=mRNA" - - - -	19961	13,709,870 – 13,709,969	+	5	99	97.94	-2.71	0.83	0.920778
14499	dm3.chrX	13,709,870 – 13,709,969		19962	13,709,870 – 13,709,969	-	5	99	97.94	-4.38	0.83	0.997163
14500	dm3.chrX	13,710,020 – 13,710,123	- - - intron="intron;ID=intron_CG10997:1_CG10997:2;Name=Clic-in;Parent=FBtr0073835;parent_type=mRNA" - - - -	19963	13,710,020 – 13,710,123	+	6	117	65.62	-1.35	0.55	0.978018
14500	dm3.chrX	13,710,020 – 13,710,123		19964	13,710,020 – 13,710,123	-	6	117	65.62	-0.44	0.55	0.591895
14501	dm3.chrX	13,711,540 – 13,711,600	- - - intron="intron;ID=intron_CG10997:1_CG10997:2;Name=Clic-in;Parent=FBtr0073835;parent_type=mRNA" - - - -	19965	13,711,540 – 13,711,600	+	3	73	78.97	-1.42	0.85	0.835575
14502	dm3.chrX	13,712,194 – 13,712,286	- - - intron="intron;ID=intron_CG10997:1_CG10997:2;Name=Clic-in;Parent=FBtr0073835;parent_type=mRNA" - - - -	19966	13,712,194 – 13,712,286	-	6	103	80.07	-1.22	0.70	0.520288
14503	dm3.chrX	13,721,042 – 13,721,178	- - CDS="CDS;ID=CDS_FBgn0030530:4_955;Name=jub-cds;Parent=FBtr0303419;parent_type=mRNA" - - - - -	19967	13,721,042 – 13,721,146	+	11	108	67.55	-1.28	0.44	0.944091
				19968	13,721,042 – 13,721,146	-	11	108	67.55	-0.89	0.54	0.957109
				19969	13,721,062 – 13,721,178	+	8	117	72.77	-1.59	0.54	0.905307
				19970	13,721,062 – 13,721,178	-	8	117	72.77	-1.44	0.62	0.940234
14504	dm3.chrX	13,727,714 – 13,727,833	- - - intron="intron;ID=intron_FBgn0052626:9_FBgn0052626:8;Name=CG32626-in;Parent=FBtr0303292;parent_type=mRNA" - - - -	19971	13,727,714 – 13,727,833	-	4	119	82.16	-1.45	0.75	0.596665
14505	dm3.chrX	13,729,828 – 13,729,937	- - - - - - - -	19972	13,729,828 – 13,729,937	-	4	115	59.38	-1.56	0.35	0.718860
14506	dm3.chrX	13,738,926 – 13,739,022	- - - - - - - -	19973	13,738,926 – 13,739,022	+	4	98	75.04	-2.60	0.44	0.898302
14507	dm3.chrX	13,746,827 – 13,746,917	- - - - - - - -	19974	13,746,827 – 13,746,917	-	5	90	98.22	-1.32	0.98	0.781862
14508	dm3.chrX	13,783,558 – 13,783,624	- - - intron="intron;ID=intron_FBgn0085375:9_FBgn0085375:8;Name=mamo-in;Parent=FBtr0112554,FBtr0112555,FBtr0303571;parent_type=mRNA" - - - -	19975	13,783,558 – 13,783,624	-	6	67	79.31	-0.87	0.77	0.510643
14509	dm3.chrX	13,790,068 – 13,790,160	- - - intron="intron;ID=intron_FBgn0085375:9_FBgn0085375:8;Name=mamo-in;Parent=FBtr0112554,FBtr0112555,FBtr0303571;parent_type=mRNA" - - - -	19976	13,790,068 – 13,790,160	-	6	98	73.35	-1.41	0.54	0.732528
14510	dm3.chrX	13,801,316 – 13,801,376	- - - intron="intron;ID=intron_FBgn0085375:10_FBgn0085375:9;Name=mamo-in;Parent=FBtr0303571;parent_type=mRNA" - - - -	19977	13,801,316 – 13,801,376	+	5	65	88.60	-2.71	0.84	0.985622
14510	dm3.chrX	13,801,316 – 13,801,376		19978	13,801,316 – 13,801,376	-	5	65	88.60	-2.80	0.85	0.989621
14511	dm3.chrX	13,808,018 – 13,808,117	- - - intron="intron;ID=intron_FBgn0085375:10_FBgn0085375:9;Name=mamo-in;Parent=FBtr0303571;parent_type=mRNA" - - - -	19979	13,808,018 – 13,808,117	-	6	99	78.96	-1.91	0.57	0.862214
14512	dm3.chrX	13,813,236 – 13,813,297	- - - intron="intron;ID=intron_FBgn0085375:10_FBgn0085375:9;Name=mamo-in;Parent=FBtr0303571;parent_type=mRNA" - - - -	19980	13,813,236 – 13,813,297	+	8	62	74.23	-1.94	0.49	0.964760
14513	dm3.chrX	13,815,834 – 13,815,903	- - - intron="intron;ID=intron_FBgn0085375:10_FBgn0085375:9;Name=mamo-in;Parent=FBtr0303571;parent_type=mRNA" - - - -	19981	13,815,834 – 13,815,903	+	5	69	80.29	-2.75	0.64	0.989590
14513	dm3.chrX	13,815,834 – 13,815,903		19982	13,815,834 – 13,815,903	-	5	69	80.29	-2.04	0.66	0.922244
14514	dm3.chrX	13,821,434 – 13,821,527	- - - intron="intron;ID=intron_FBgn0085375:10_FBgn0085375:9;Name=mamo-in;Parent=FBtr0303571;parent_type=mRNA" - - - -	19983	13,821,434 – 13,821,527	-	12	117	83.47	-1.59	0.67	0.500000
14515	dm3.chrX	13,828,825 – 13,828,921	- - - - - - - -	19984	13,828,825 – 13,828,921	+	7	112	71.98	-1.56	0.72	0.987321
14516	dm3.chrX	13,842,175 – 13,842,266	- - - - - - - -	19985	13,842,175 – 13,842,266	+	8	107	71.78	-1.78	0.40	0.734823
14517	dm3.chrX	13,866,146 – 13,866,206	- - - - - - - -	19986	13,866,146 – 13,866,206	+	7	60	77.86	-1.23	0.62	0.646656
14517	dm3.chrX	13,866,146 – 13,866,206	- - - - - - - -	19987	13,866,146 – 13,866,206	-	7	60	77.86	-1.14	0.62	0.565359
14518	dm3.chrX	13,867,866 – 13,867,958	- - - - - - - -	19988	13,867,866 – 13,867,958	-	5	93	90.40	-1.56	0.83	0.593335
14519	dm3.chrX	13,868,373 – 13,868,502	- - - - - - - -	19989	13,868,373 – 13,868,502	+	11	150	69.61	-1.54	0.39	0.765654
14520	dm3.chrX	13,870,748 – 13,870,892	- - - - - - - -	19990	13,870,748 – 13,870,892	+	7	168	80.92	-2.32	0.49	0.639677
14521	dm3.chrX	13,872,201 – 13,872,291	- - - - - - - -	19991	13,872,201 – 13,872,291	+	6	109	72.16	-1.28	0.63	0.865872
14522	dm3.chrX	13,872,396 – 13,872,491	- - - - - - - -	19992	13,872,396 – 13,872,491	-	3	105	74.59	-1.69	0.64	0.678282
14523	dm3.chrX	13,883,067 – 13,883,185	- - - - - - - -	19993	13,883,067 – 13,883,185	+	6	133	65.15	-1.51	0.35	0.685020
14524	dm3.chrX	13,885,713 – 13,885,854	- - - - - - - -	19994	13,885,713 – 13,885,854	+	4	142	62.92	-1.39	0.43	0.650314
14525	dm3.chrX	13,887,506 – 13,887,563	- - - - - - - -	19995	13,887,506 – 13,887,563	+	7	58	76.18	-2.64	0.66	0.997813
14525	dm3.chrX	13,887,506 – 13,887,563	- - - - - - - -	19996	13,887,506 – 13,887,563	-	7	58	76.18	-2.17	0.53	0.966905
14526	dm3.chrX	13,895,306 – 13,895,424	- - - - - - - -	19997	13,895,306 – 13,895,424	-	3	142	71.06	-2.67	0.61	0.990915
14527	dm3.chrX	13,908,213 – 13,908,293	- - - - - - - -	19998	13,908,213 – 13,908,293	-	3	80	88.89	-1.30	0.89	0.576318
14528	dm3.chrX	13,908,833 – 13,908,924	FBnoncoding="tRNA;ID=FBtr0073857;Name=tRNA:R:12Ee-RA;Parent=FBgn0011952;Dbxref=FlyBase_Annotation_IDs:CR32624-RA;score_text=Weakly" tRNAscann="Arg_chrX_trna5" - - "Rfam_10.0=RF00005;tRNA;AAJJ01004069.1/7732-7804\|2.5e-32" - - -	19999	13,908,833 – 13,908,924	+	13	110	71.03	-1.24	0.57	0.953585
14528	dm3.chrX	13,908,833 – 13,908,924		20000	13,908,833 – 13,908,924	-	13	110	71.03	-1.75	0.53	0.986851
14529	dm3.chrX	13,910,222 – 13,910,329	FBnoncoding="tRNA;ID=FBtr0073860;Name=tRNA:R:12Ea-RA;Parent=FBgn0011948;Dbxref=FlyBase_Annotation_IDs:CR32622-RA;score_text=Weakly" tRNAscann="Arg_chrX_trna8" - - "Rfam_10.0=RF00005;tRNA;AAJJ01004069.1/7732-7804\|7.4e-30" - - -	20001	13,910,222 – 13,910,329	+	9	120	66.61	-0.97	0.90	0.980598
14529	dm3.chrX	13,910,222 – 13,910,329		20002	13,910,222 – 13,910,329	-	9	120	66.61	-1.84	0.83	0.998035
14530	dm3.chrX	13,911,250 – 13,911,341	FBnoncoding="tRNA;ID=FBtr0073863;Name=tRNA:R:12Ed-RA;Parent=FBgn0011951;Dbxref=FlyBase_Annotation_IDs:CR32617-RA;score_text=Weakly" tRNAscann="Arg_chrX_trna11" - - "Rfam_10.0=RF00005;tRNA;AAJJ01004069.1/7732-7804\|2.3e-26" - - -	20003	13,911,250 – 13,911,341	+	11	100	55.29	-0.42	0.66	0.984407
14530	dm3.chrX	13,911,250 – 13,911,341		20004	13,911,250 – 13,911,341	-	11	100	55.29	-1.06	0.85	0.997163
14531	dm3.chrX	13,931,837 – 13,931,894	- - - - - - - -	20005	13,931,837 – 13,931,894	+	5	66	53.80	-0.73	0.39	0.553224
14532	dm3.chrX	13,934,113 – 13,934,182	- - - - - - - -	20006	13,934,113 – 13,934,182	+	5	69	71.88	-1.10	0.65	0.834380
14533	dm3.chrX	13,938,521 – 13,938,641	- - - - - - - -	20007	13,938,521 – 13,938,641	+	12	120	96.21	-2.30	0.88	0.931875
14533	dm3.chrX	13,938,521 – 13,938,641	- - - - - - - -	20008	13,938,521 – 13,938,641	-	12	120	96.21	-1.36	0.95	0.755763
14534	dm3.chrX	13,947,131 – 13,947,189	- - CDS="CDS;ID=CDS_FBgn0053242:1_960;Name=Ste:CG33242-cds;Parent=FBtr0300091;parent_type=mRNA" - - - - -	20009	13,947,131 – 13,947,189	+	3	59	69.49	-1.97	0.72	0.980807
14535	dm3.chrX	13,967,919 – 13,968,067	- - - - - - - -	20010	13,967,919 – 13,968,028	-	10	118	84.71	-1.44	0.72	0.623786
14535	dm3.chrX	13,967,919 – 13,968,067	- - - - - - - -	20011	13,967,959 – 13,968,067	+	9	109	70.55	-1.42	0.43	0.862458
14536	dm3.chrX	13,970,961 – 13,971,069	- - - - - - - -	20012	13,970,961 – 13,971,069	+	3	108	72.81	-1.73	0.66	0.870017
14537	dm3.chrX	13,976,906 – 13,976,999	- - - - - - - -	20013	13,976,906 – 13,976,999	+	6	117	57.27	-0.71	0.46	0.744028
14538	dm3.chrX	13,982,193 – 13,982,291	- - - - - - - -	20014	13,982,193 – 13,982,291	+	6	114	74.11	-2.22	0.46	0.904486
14538	dm3.chrX	13,982,193 – 13,982,291	- - - - - - - -	20015	13,982,193 – 13,982,291	-	6	114	74.11	-2.59	0.47	0.976163
14539	dm3.chrX	13,983,539 – 13,983,644	- - - - - - - -	20016	13,983,539 – 13,983,644	+	3	105	77.52	-1.69	0.75	0.828395
14540	dm3.chrX	13,985,182 – 13,985,280	- - - - - - - -	20017	13,985,182 – 13,985,280	+	7	99	73.78	-1.23	0.58	0.620200
14541	dm3.chrX	13,986,098 – 13,986,191	- - - - - - - -	20018	13,986,098 – 13,986,191	+	9	108	74.05	-1.40	0.56	0.826612
14542	dm3.chrX	13,987,532 – 13,987,592	- - - - - - - -	20019	13,987,532 – 13,987,592	+	5	61	73.08	-1.46	1.00	0.979212
14542	dm3.chrX	13,987,532 – 13,987,592	- - - - - - - -	20020	13,987,532 – 13,987,592	-	5	61	73.08	-0.90	0.80	0.812364
14543	dm3.chrX	13,989,086 – 13,989,190	- - - - - - - -	20021	13,989,086 – 13,989,190	+	5	116	85.27	-2.08	0.84	0.959522
14544	dm3.chrX	13,991,269 – 13,991,361	- - - - - - - -	20022	13,991,269 – 13,991,361	-	7	93	90.52	-1.75	0.85	0.818840
14545	dm3.chrX	13,993,524 – 13,993,614	- - - - - - - -	20023	13,993,524 – 13,993,614	-	6	93	74.65	-2.30	0.42	0.888934
14546	dm3.chrX	13,997,395 – 13,997,490	FBnoncoding="tRNA;ID=FBtr0073872;Name=tRNA:S4:12Ee-RA;Parent=FBgn0011977;Dbxref=FlyBase_Annotation_IDs:CR32608-RA;score_text=Weakly" tRNAscann="Ser_chrX_trna22" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000077.1/46163-46244\|4.6e-40" - - -	20024	13,997,395 – 13,997,490	+	13	96	83.64	-1.14	0.90	0.912631
14546	dm3.chrX	13,997,395 – 13,997,490		20025	13,997,395 – 13,997,490	-	13	96	83.64	-1.40	0.86	0.942589
14547	dm3.chrX	13,998,012 – 13,998,067	- - - - - - - -	20026	13,998,012 – 13,998,067	+	8	55	75.23	-1.62	0.65	0.966164
14547	dm3.chrX	13,998,012 – 13,998,067	- - - - - - - -	20027	13,998,012 – 13,998,067	-	8	55	75.23	-1.63	0.44	0.582875
14548	dm3.chrX	13,998,680 – 13,998,763	FBnoncoding="tRNA;ID=FBtr0073866;Name=tRNA:S774:12Ef-RA;Parent=FBgn0011981;Dbxref=FlyBase_Annotation_IDs:CR32618-RA;score_text=Weakly" tRNAscann="Ser_chrX_trna13" - - "Rfam_10.0=RF00005;tRNA;AAJJ01000077.1/46163-46244\|2.3e-35" - - -	20028	13,998,680 – 13,998,763	+	11	83	93.49	-1.48	0.91	0.788236
14548	dm3.chrX	13,998,680 – 13,998,763		20029	13,998,680 – 13,998,763	-	11	83	93.49	-1.39	0.87	0.560994
14549	dm3.chrX	14,011,761 – 14,011,868	FBnoncoding="tRNA;ID=FBtr0073870;Name=tRNA:S7:12Eg-RA;Parent=FBgn0011983;Dbxref=FlyBase_Annotation_IDs:CR32609-RA;score_text=Weakly" tRNAscann="Ser_chrX_trna20" - - "Rfam_10.0=RF00005;tRNA;BABH01061698.1/19-99\|3.1e-35" - - -	20030	14,011,761 – 14,011,868	+	12	111	83.10	-1.12	0.93	0.911777
14549	dm3.chrX	14,011,761 – 14,011,868		20031	14,011,761 – 14,011,868	-	12	111	83.10	-1.23	0.98	0.950966
14550	dm3.chrX	14,019,365 – 14,019,433	- - - - - - - -	20032	14,019,365 – 14,019,433	+	5	82	66.85	-2.31	0.42	0.965280
14550	dm3.chrX	14,019,365 – 14,019,433	- - - - - - - -	20033	14,019,365 – 14,019,433	-	5	82	66.85	-2.28	0.41	0.953506
14551	dm3.chrX	14,020,370 – 14,020,441	- - - - - - - -	20034	14,020,370 – 14,020,441	+	5	79	68.46	-0.93	0.53	0.514842
14552	dm3.chrX	14,036,784 – 14,036,888	- - - - - - - -	20035	14,036,784 – 14,036,883	-	9	114	69.17	-1.43	0.48	0.925977
14552	dm3.chrX	14,036,784 – 14,036,888	- - - - - - - -	20036	14,036,791 – 14,036,888	-	9	112	71.53	-1.89	0.40	0.888361
14553	dm3.chrX	14,081,917 – 14,082,013	- - - - - - - -	20037	14,081,917 – 14,082,013	-	7	101	61.05	-1.00	0.36	0.692765
14554	dm3.chrX	14,086,846 – 14,086,920	- - - - - - - -	20038	14,086,846 – 14,086,920	-	6	74	63.74	-2.59	0.42	0.998710
14555	dm3.chrX	14,099,606 – 14,099,736	- - - intron="intron;ID=intron_FBgn0040153:3_FBgn0040153:1;Name=l(1)G0469-in;Parent=FBtr0113318;parent_type=mRNA" - - - -	20039	14,099,606 – 14,099,719	-	5	120	87.83	-2.75	0.77	0.977394
14555	dm3.chrX	14,099,606 – 14,099,736		20040	14,099,623 – 14,099,736	-	5	120	85.81	-4.66	0.79	0.999406
14556	dm3.chrX	14,102,075 – 14,102,167	- - - intron="intron;ID=intron_FBgn0040153:6_FBgn0040153:4;Name=l(1)G0469-in;Parent=FBtr0073927;parent_type=mRNA" - - - -	20041	14,102,075 – 14,102,167	-	6	99	72.77	-2.56	0.50	0.991587
14557	dm3.chrX	14,109,344 – 14,109,497	- - - intron="intron;ID=intron_CG32604:5_CG32604:3;Name=l(1)G0007-in;Parent=FBtr0073901;parent_type=mRNA" - - - -	20042	14,109,344 – 14,109,497	+	5	174	69.12	-1.22	0.61	0.821804
14558	dm3.chrX	14,113,326 – 14,113,420	- - - intron="intron;ID=intron_CG32604:5_CG32604:3;Name=l(1)G0007-in;Parent=FBtr0073901;parent_type=mRNA" - - - -	20043	14,113,326 – 14,113,420	-	8	111	72.36	-1.33	0.55	0.768505
14559	dm3.chrX	14,115,435 – 14,115,640	- - - intron="intron;ID=intron_CG32604:5_CG32604:3;Name=l(1)G0007-in;Parent=FBtr0073901;parent_type=mRNA" - - - -	20044	14,115,435 – 14,115,532	+	3	97	89.32	-1.36	0.93	0.773857
				20045	14,115,512 – 14,115,605	+	4	118	64.32	-0.76	0.68	0.700263
				20046	14,115,532 – 14,115,640	+	6	114	83.93	-2.02	0.65	0.790389
				20047	14,115,532 – 14,115,640	-	6	114	83.93	-1.66	0.72	0.718485
14560	dm3.chrX	14,116,276 – 14,116,395	- - - intron="intron;ID=intron_CG32604:5_CG32604:3;Name=l(1)G0007-in;Parent=FBtr0073901;parent_type=mRNA" - - - -	20048	14,116,276 – 14,116,395	-	5	120	89.03	-2.13	0.74	0.766806
14561	dm3.chrX	14,116,714 – 14,116,810	- - - intron="intron;ID=intron_CG32604:5_CG32604:3;Name=l(1)G0007-in;Parent=FBtr0073901;parent_type=mRNA" - - - -	20049	14,116,714 – 14,116,810	-	7	106	69.87	-1.29	0.45	0.659278
14562	dm3.chrX	14,124,125 – 14,124,236	- - CDS="CDS;ID=CDS_FBgn0259166:3_961;Name=CG42271-cds;Parent=FBtr0299615;parent_type=mRNA" - - - - -	20050	14,124,125 – 14,124,236	+	13	115	79.38	-2.14	0.39	0.643377
14563	dm3.chrX	14,129,819 – 14,129,916	- - - intron="intron;ID=intron_CG1839:4_CG1839:5;Name=Fbxl4-in;Parent=FBtr0073923;parent_type=mRNA" - - - -	20051	14,129,819 – 14,129,916	+	12	106	60.19	-0.25	0.51	0.825285
14563	dm3.chrX	14,129,819 – 14,129,916		20052	14,129,819 – 14,129,916	-	12	106	60.19	-0.52	0.42	0.695245
14564	dm3.chrX	14,140,237 – 14,140,372	- - CDS="CDS;ID=CDS_FBgn0260482:4_980;Name=CG32599-cds;Parent=FBtr0073904;parent_type=mRNA" - - - - -	20053	14,140,237 – 14,140,336	-	4	99	66.50	-1.43	0.58	0.944879
14564	dm3.chrX	14,140,237 – 14,140,372		20054	14,140,259 – 14,140,372	+	5	113	65.04	-1.27	0.47	0.902567
14565	dm3.chrX	14,165,319 – 14,165,374	- - - intron="intron;ID=intron_FBgn0002917:7_FBgn0002917:8;Name=na-in;Parent=FBtr0112815;parent_type=mRNA" - - - -	20055	14,165,319 – 14,165,374	-	6	55	96.97	-1.89	0.96	0.939680
14566	dm3.chrX	14,186,097 – 14,186,189	- - - intron="intron;ID=intron_FBgn0030562:4_FBgn0030562:3;Name=CG9400-in;Parent=FBtr0112982;parent_type=mRNA" - - - -	20056	14,186,097 – 14,186,189	-	3	100	68.47	-1.88	0.51	0.792291
14567	dm3.chrX	14,191,369 – 14,191,440	- - - intron="intron;ID=intron_FBgn0030562:4_FBgn0030562:3;Name=CG9400-in;Parent=FBtr0112982;parent_type=mRNA" - - - -	20057	14,191,369 – 14,191,440	+	9	77	79.44	-1.84	0.51	0.641353
14568	dm3.chrX	14,193,140 – 14,193,235	- - - intron="intron;ID=intron_FBgn0030562:4_FBgn0030562:3;Name=CG9400-in;Parent=FBtr0112982;parent_type=mRNA" - - - -	20058	14,193,140 – 14,193,235	-	7	113	67.16	-2.30	0.40	0.981332
14569	dm3.chrX	14,193,305 – 14,193,409	- - - intron="intron;ID=intron_FBgn0030562:4_FBgn0030562:3;Name=CG9400-in;Parent=FBtr0112982;parent_type=mRNA" - - - -	20059	14,193,305 – 14,193,409	+	6	106	81.84	-2.06	0.53	0.629078
14570	dm3.chrX	14,206,652 – 14,206,769	- - - - - - - -	20060	14,206,652 – 14,206,769	-	3	117	96.58	-3.51	0.97	0.997637
14571	dm3.chrX	14,206,987 – 14,207,092	- - - - - - - -	20061	14,206,987 – 14,207,092	+	3	108	84.69	-2.44	0.57	0.542179
14571	dm3.chrX	14,206,987 – 14,207,092	- - - - - - - -	20062	14,206,987 – 14,207,092	-	3	108	84.69	-4.10	0.66	0.997935
14572	dm3.chrX	14,212,163 – 14,212,272	- - - - - - - -	20063	14,212,163 – 14,212,272	-	5	118	86.32	-1.50	0.77	0.513946
14573	dm3.chrX	14,214,562 – 14,214,675	- - - - - - - -	20064	14,214,562 – 14,214,675	-	3	113	80.56	-2.24	0.77	0.940822
14574	dm3.chrX	14,216,840 – 14,216,941	- - - - - - - -	20065	14,216,840 – 14,216,941	+	5	111	75.83	-1.70	0.56	0.710480
14575	dm3.chrX	14,221,700 – 14,221,860	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20066	14,221,700 – 14,221,820	+	5	120	93.92	-2.33	0.83	0.900210
				20067	14,221,700 – 14,221,820	-	5	120	93.92	-3.12	0.82	0.985668
				20068	14,221,740 – 14,221,860	-	5	120	97.17	-1.15	0.98	0.712272
14576	dm3.chrX	14,224,600 – 14,224,661	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20069	14,224,600 – 14,224,661	-	8	67	78.24	-1.98	0.55	0.891673
14577	dm3.chrX	14,224,709 – 14,224,819	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20070	14,224,709 – 14,224,819	+	5	110	85.40	-2.02	0.66	0.655366
14578	dm3.chrX	14,226,029 – 14,226,082	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20071	14,226,029 – 14,226,082	+	8	60	75.15	-0.98	0.59	0.554769
14579	dm3.chrX	14,226,563 – 14,226,659	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20072	14,226,563 – 14,226,659	+	7	104	69.18	-0.72	0.52	0.557978
14579	dm3.chrX	14,226,563 – 14,226,659		20073	14,226,563 – 14,226,659	-	7	104	69.18	-1.61	0.57	0.986433
14580	dm3.chrX	14,226,927 – 14,227,022	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20074	14,226,927 – 14,227,022	+	5	101	81.48	-1.39	0.80	0.758081
14581	dm3.chrX	14,234,422 – 14,234,577	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20075	14,234,422 – 14,234,577	-	6	163	81.97	-1.72	0.59	0.520676
14582	dm3.chrX	14,236,413 – 14,236,504	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20076	14,236,413 – 14,236,504	+	5	121	70.15	-1.68	0.79	0.979321
14582	dm3.chrX	14,236,413 – 14,236,504		20077	14,236,413 – 14,236,504	-	5	121	70.15	-1.32	0.68	0.861089
14583	dm3.chrX	14,237,362 – 14,237,480	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20078	14,237,362 – 14,237,480	+	4	120	82.35	-1.60	0.73	0.670019
14584	dm3.chrX	14,239,432 – 14,239,540	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20079	14,239,432 – 14,239,540	-	6	120	73.05	-1.68	0.60	0.949306
14585	dm3.chrX	14,244,250 – 14,244,303	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20080	14,244,250 – 14,244,303	-	6	54	78.62	-1.59	0.59	0.705496
14586	dm3.chrX	14,245,736 – 14,245,846	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20081	14,245,736 – 14,245,833	+	5	117	71.51	-1.59	0.48	0.683165
14586	dm3.chrX	14,245,736 – 14,245,846		20082	14,245,739 – 14,245,846	+	4	116	88.50	-1.86	0.76	0.606348
14587	dm3.chrX	14,246,494 – 14,246,596	- - - intron="intron;ID=intron_CG32600:2_CG32600:3;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20083	14,246,494 – 14,246,596	+	6	113	75.09	-1.81	0.56	0.908613
14588	dm3.chrX	14,251,524 – 14,251,632	- - - intron="intron;ID=intron_CG32600:3_CG32600:4;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20084	14,251,524 – 14,251,632	+	5	119	79.11	-2.25	0.57	0.894128
14589	dm3.chrX	14,254,136 – 14,254,330	- - - intron="intron;ID=intron_CG32600:3_CG32600:4;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" "Rfam_10.0=RF00136;SNORD81;AASW01047298.1/2708-2783\|1.9e-13" - - -	20085	14,254,136 – 14,254,254	-	5	121	81.42	-2.14	0.68	0.927012
				20086	14,254,174 – 14,254,290	-	5	120	77.77	-2.20	0.62	0.953791
				20087	14,254,214 – 14,254,330	-	5	120	75.69	-1.54	0.60	0.747406
14590	dm3.chrX	14,263,095 – 14,263,218	- - - intron="intron;ID=intron_CG32600:3_CG32600:4;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20088	14,263,095 – 14,263,218	-	5	124	75.93	-1.67	0.58	0.821232
14591	dm3.chrX	14,264,807 – 14,264,926	- - - intron="intron;ID=intron_CG32600:3_CG32600:4;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20089	14,264,807 – 14,264,926	-	4	119	82.07	-1.70	0.69	0.621241
14592	dm3.chrX	14,265,299 – 14,265,404	- - - intron="intron;ID=intron_CG32600:3_CG32600:4;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20090	14,265,299 – 14,265,404	-	3	105	84.19	-2.72	0.68	0.941224
14593	dm3.chrX	14,271,281 – 14,271,422	- - - intron="intron;ID=intron_CG32600:3_CG32600:4;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20091	14,271,281 – 14,271,396	-	6	119	73.33	-1.27	0.64	0.890883
14593	dm3.chrX	14,271,281 – 14,271,422		20092	14,271,319 – 14,271,422	-	6	105	70.59	-1.91	0.42	0.892914
14594	dm3.chrX	14,275,180 – 14,275,325	- - CDS="CDS;ID=CDS_FBgn0030566:2_1027;Name=betaNACtes4-cds;Parent=FBtr0073915;parent_type=mRNA" - - - - -	20093	14,275,180 – 14,275,325	-	7	187	55.58	-2.31	0.15	0.592563
14595	dm3.chrX	14,282,771 – 14,282,966	- - - - - - - -	20094	14,282,771 – 14,282,874	+	5	103	93.29	-1.29	0.90	0.550086
14595	dm3.chrX	14,282,771 – 14,282,966	- - - - - - - -	20095	14,282,874 – 14,282,966	-	6	118	82.21	-2.60	0.66	0.966001
14596	dm3.chrX	14,295,203 – 14,295,262	- - - intron="intron;ID=intron_CG32600:4_CG32600:5;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20096	14,295,203 – 14,295,262	-	3	59	94.32	-0.66	1.06	0.815386
14597	dm3.chrX	14,298,287 – 14,298,396	- - - intron="intron;ID=intron_CG32600:4_CG32600:5;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20097	14,298,287 – 14,298,396	+	6	117	72.12	-1.21	0.52	0.657545
14598	dm3.chrX	14,306,890 – 14,306,982	- - - intron="intron;ID=intron_CG32600:5_CG32600:6;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20098	14,306,890 – 14,306,982	-	7	112	69.13	-1.26	0.68	0.965746
14599	dm3.chrX	14,308,165 – 14,308,241	- - - intron="intron;ID=intron_CG32600:5_CG32600:6;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20099	14,308,165 – 14,308,241	+	5	82	77.81	-2.41	0.59	0.972066
14599	dm3.chrX	14,308,165 – 14,308,241		20100	14,308,165 – 14,308,241	-	5	82	77.81	-1.85	0.62	0.878174
14600	dm3.chrX	14,318,175 – 14,318,279	- - - intron="intron;ID=intron_CG32600:5_CG32600:6;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20101	14,318,175 – 14,318,279	+	9	115	82.67	-2.53	0.51	0.868088
14600	dm3.chrX	14,318,175 – 14,318,279		20102	14,318,175 – 14,318,279	-	9	115	82.67	-3.05	0.57	0.988259
14601	dm3.chrX	14,326,301 – 14,326,492	- - - intron="intron;ID=intron_CG32600:6_CG32600:7;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20103	14,326,301 – 14,326,404	+	6	103	91.97	-2.62	0.79	0.951665
				20104	14,326,301 – 14,326,404	-	6	103	91.97	-2.50	0.77	0.914747
				20105	14,326,313 – 14,326,416	+	6	103	91.33	-2.61	0.74	0.922739
				20106	14,326,416 – 14,326,492	-	4	85	76.40	-1.01	0.81	0.688067
14602	dm3.chrX	14,334,919 – 14,335,028	- - - intron="intron;ID=intron_CG32600:6_CG32600:7;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20107	14,334,919 – 14,335,028	+	6	109	77.55	-1.25	0.61	0.644781
14603	dm3.chrX	14,335,494 – 14,335,640	- - - intron="intron;ID=intron_CG32600:6_CG32600:7;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20108	14,335,494 – 14,335,640	-	5	162	80.30	-1.55	0.67	0.619978
14604	dm3.chrX	14,336,034 – 14,336,171	- - - intron="intron;ID=intron_CG32600:6_CG32600:7;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20109	14,336,034 – 14,336,171	+	5	140	69.05	-1.22	0.48	0.647502
14604	dm3.chrX	14,336,034 – 14,336,171		20110	14,336,034 – 14,336,171	-	5	140	69.05	-1.63	0.58	0.975160
14605	dm3.chrX	14,345,329 – 14,345,456	- - - intron="intron;ID=intron_CG32600:7_CG32600:8;Name=dpr8-in;Parent=FBtr0073913;parent_type=mRNA" - - - -	20111	14,345,329 – 14,345,456	+	4	132	67.25	-0.97	0.64	0.711978
14606	dm3.chrX	14,355,218 – 14,355,319	- - - - - - - -	20112	14,355,218 – 14,355,319	+	3	101	95.38	-0.88	0.99	0.593247
14607	dm3.chrX	14,358,262 – 14,358,357	- - - - - - - -	20113	14,358,262 – 14,358,357	+	3	118	83.05	-1.86	0.68	0.500000
14608	dm3.chrX	14,368,442 – 14,368,501	- - CDS="CDS;ID=CDS_CG9411:3_911;Name=CG9411-cds;Parent=FBtr0073916;parent_type=mRNA" - - - - -	20114	14,368,442 – 14,368,501	+	6	65	60.24	-1.31	0.41	0.912263
14609	dm3.chrX	14,375,900 – 14,376,009	- - - - - - - -	20115	14,375,900 – 14,376,009	+	6	118	65.10	-3.31	0.37	0.998872
14609	dm3.chrX	14,375,900 – 14,376,009	- - - - - - - -	20116	14,375,900 – 14,376,009	-	6	118	65.10	-2.11	0.33	0.882502
14610	dm3.chrX	14,376,817 – 14,376,911	- - - - - - - -	20117	14,376,817 – 14,376,911	+	5	94	83.83	-1.52	0.84	0.868982
14611	dm3.chrX	14,381,771 – 14,381,864	- - - - - - - -	20118	14,381,771 – 14,381,864	-	5	106	70.05	-2.28	0.53	0.990310
14612	dm3.chrX	14,385,820 – 14,385,956	- - - - - - - -	20119	14,385,820 – 14,385,956	-	4	144	76.97	-1.86	0.56	0.602220
14613	dm3.chrX	14,387,440 – 14,387,572	- - - - - - - -	20120	14,387,440 – 14,387,545	+	5	109	70.15	-1.03	0.58	0.748358
14613	dm3.chrX	14,387,440 – 14,387,572	- - - - - - - -	20121	14,387,460 – 14,387,572	+	6	113	71.64	-1.25	0.51	0.682613
14614	dm3.chrX	14,397,373 – 14,397,468	- - - - - - - -	20122	14,397,373 – 14,397,468	+	6	112	71.98	-1.83	0.40	0.578286
14615	dm3.chrX	14,397,899 – 14,398,007	- - - - - - - -	20123	14,397,899 – 14,398,007	+	5	111	71.79	-2.05	0.41	0.819748
14615	dm3.chrX	14,397,899 – 14,398,007	- - - - - - - -	20124	14,397,899 – 14,398,007	-	5	111	71.79	-1.87	0.65	0.986513
14616	dm3.chrX	14,400,586 – 14,400,727	- - - - - - - -	20125	14,400,586 – 14,400,706	+	5	120	79.15	-1.69	0.65	0.807905
				20126	14,400,626 – 14,400,727	+	4	118	76.26	-1.80	0.62	0.762852
				20127	14,400,626 – 14,400,727	-	4	118	76.26	-2.31	0.61	0.945431
14617	dm3.chrX	14,405,473 – 14,405,572	- - - - - - - -	20128	14,405,473 – 14,405,572	-	5	109	68.77	-1.04	0.48	0.505457
14618	dm3.chrX	14,405,756 – 14,405,847	- - - - - - - -	20129	14,405,756 – 14,405,847	+	6	95	72.43	-1.64	0.47	0.763441
14619	dm3.chrX	14,412,360 – 14,412,459	- - - - - - - -	20130	14,412,360 – 14,412,459	+	6	112	63.44	-1.38	0.48	0.971600
14620	dm3.chrX	14,416,331 – 14,416,423	- - - - - - - -	20131	14,416,331 – 14,416,423	+	6	104	71.41	-3.46	0.72	0.999717
14620	dm3.chrX	14,416,331 – 14,416,423	- - - - - - - -	20132	14,416,331 – 14,416,423	-	6	104	71.41	-1.94	0.63	0.986837
14621	dm3.chrX	14,422,146 – 14,422,297	- - - - - - - -	20133	14,422,146 – 14,422,297	+	4	154	97.38	-1.90	0.94	0.902343
14621	dm3.chrX	14,422,146 – 14,422,297	- - - - - - - -	20134	14,422,146 – 14,422,297	-	4	154	97.38	-1.98	0.96	0.943231
14622	dm3.chrX	14,426,125 – 14,426,243	- - - - - - - -	20135	14,426,125 – 14,426,243	-	4	118	89.80	-2.09	0.90	0.954455
14623	dm3.chrX	14,431,619 – 14,431,719	- - - - - - - -	20136	14,431,619 – 14,431,719	-	4	100	89.88	-2.08	0.74	0.627591
14624	dm3.chrX	14,433,877 – 14,434,021	- - - - - - - -	20137	14,433,877 – 14,434,021	+	5	150	80.90	-2.27	0.48	0.614932
14624	dm3.chrX	14,433,877 – 14,434,021	- - - - - - - -	20138	14,433,877 – 14,434,021	-	5	150	80.90	-2.31	0.68	0.965013
14625	dm3.chrX	14,438,020 – 14,438,121	- - - - - - - -	20139	14,438,020 – 14,438,121	-	6	105	82.91	-1.46	0.69	0.551690
14626	dm3.chrX	14,439,210 – 14,439,318	- - - - - - - -	20140	14,439,210 – 14,439,318	-	6	116	61.48	-0.83	0.45	0.790763
14627	dm3.chrX	14,459,220 – 14,459,336	- - - - - - - -	20141	14,459,220 – 14,459,336	+	9	138	75.13	-1.07	0.65	0.725767
14627	dm3.chrX	14,459,220 – 14,459,336	- - - - - - - -	20142	14,459,220 – 14,459,336	-	9	138	75.13	-1.34	0.69	0.916197
14628	dm3.chrX	14,465,145 – 14,465,245	- - - - - - - -	20143	14,465,145 – 14,465,245	+	6	105	68.48	-1.80	0.36	0.708415
14629	dm3.chrX	14,468,385 – 14,468,500	- - - - - - - -	20144	14,468,385 – 14,468,484	+	7	99	78.92	-0.71	0.79	0.602833
14629	dm3.chrX	14,468,385 – 14,468,500	- - - - - - - -	20145	14,468,408 – 14,468,500	+	5	96	67.96	-1.64	0.60	0.975110
14630	dm3.chrX	14,469,033 – 14,469,147	- - - - - - - -	20146	14,469,033 – 14,469,147	-	8	120	84.63	-1.44	0.73	0.523690
14631	dm3.chrX	14,481,818 – 14,481,948	- - - intron="intron;ID=intron_FBgn0030574:5_FBgn0030574:4;Name=CG9413-in;Parent=FBtr0073943,FBtr0073944;parent_type=mRNA" - - - -	20147	14,481,818 – 14,481,948	+	5	142	63.74	-1.59	0.51	0.973498
14631	dm3.chrX	14,481,818 – 14,481,948		20148	14,481,818 – 14,481,948	-	5	142	63.74	-2.67	0.53	0.999322
14632	dm3.chrX	14,483,045 – 14,483,144	- - - intron="intron;ID=intron_FBgn0030574:7_FBgn0030574:6;Name=CG9413-in;Parent=FBtr0073943,FBtr0073944;parent_type=mRNA" - - - -	20149	14,483,045 – 14,483,144	-	5	104	68.04	-1.33	0.49	0.824430
14633	dm3.chrX	14,489,980 – 14,490,096	- - - - - - - -	20150	14,489,980 – 14,490,096	-	6	117	71.82	-1.15	0.50	0.611089
14634	dm3.chrX	14,490,468 – 14,490,534	- - - - - - - -	20151	14,490,468 – 14,490,534	-	8	70	57.10	-1.84	0.21	0.713062
14635	dm3.chrX	14,494,365 – 14,494,475	- - - - - - - -	20152	14,494,365 – 14,494,466	-	5	102	90.04	-1.22	0.88	0.539913
14635	dm3.chrX	14,494,365 – 14,494,475	- - - - - - - -	20153	14,494,372 – 14,494,475	-	5	103	91.84	-1.96	0.79	0.694144
14636	dm3.chrX	14,494,936 – 14,495,031	- - - - - - - -	20154	14,494,936 – 14,495,031	-	5	95	65.96	-0.67	0.62	0.857728
14637	dm3.chrX	14,510,132 – 14,510,242	- - - intron="intron;ID=intron_FBgn0015773:6_FBgn0015773:5;Name=NetA-in;Parent=FBtr0073942;parent_type=mRNA" - - - -	20155	14,510,132 – 14,510,242	-	12	118	80.06	-1.00	0.64	0.529270
14638	dm3.chrX	14,511,697 – 14,511,752	- - - intron="intron;ID=intron_FBgn0015773:6_FBgn0015773:5;Name=NetA-in;Parent=FBtr0073942;parent_type=mRNA" - - - -	20156	14,511,697 – 14,511,752	+	7	57	75.06	-1.66	0.72	0.978726
14639	dm3.chrX	14,512,732 – 14,512,838	- - - intron="intron;ID=intron_FBgn0015773:6_FBgn0015773:5;Name=NetA-in;Parent=FBtr0073942;parent_type=mRNA" - - - -	20157	14,512,732 – 14,512,838	+	5	114	65.48	-1.24	0.44	0.665077
14640	dm3.chrX	14,519,854 – 14,519,944	- - - intron="intron;ID=intron_FBgn0015773:7_FBgn0015773:6;Name=NetA-in;Parent=FBtr0073942;parent_type=mRNA" - - - -	20158	14,519,854 – 14,519,944	+	7	91	80.41	-2.28	0.78	0.989591
14641	dm3.chrX	14,536,532 – 14,536,583	- - - intron="intron;ID=intron_FBgn0015773:7_FBgn0015773:6;Name=NetA-in;Parent=FBtr0073942;parent_type=mRNA" - - - -	20159	14,536,532 – 14,536,583	+	5	51	99.22	-2.14	0.98	0.968008
14641	dm3.chrX	14,536,532 – 14,536,583		20160	14,536,532 – 14,536,583	-	5	51	99.22	-2.99	1.01	0.996396
14642	dm3.chrX	14,541,305 – 14,541,406	- - - intron="intron;ID=intron_FBgn0015773:7_FBgn0015773:6;Name=NetA-in;Parent=FBtr0073942;parent_type=mRNA" - - - -	20161	14,541,305 – 14,541,406	-	5	120	53.83	-1.91	0.25	0.796817
14643	dm3.chrX	14,545,466 – 14,545,581	- - - intron="intron;ID=intron_FBgn0015773:7_FBgn0015773:6;Name=NetA-in;Parent=FBtr0073942;parent_type=mRNA" - - - -	20162	14,545,466 – 14,545,559	-	6	97	77.60	-1.75	0.49	0.523587
14643	dm3.chrX	14,545,466 – 14,545,581		20163	14,545,472 – 14,545,581	-	7	113	65.70	-1.60	0.31	0.631697
14644	dm3.chrX	14,561,773 – 14,561,880	- - - - - - - -	20164	14,561,773 – 14,561,880	-	7	114	63.56	-2.29	0.20	0.574444
14645	dm3.chrX	14,568,319 – 14,568,418	- - - - - - - -	20165	14,568,319 – 14,568,418	+	7	109	69.15	-0.96	0.47	0.508521
14646	dm3.chrX	14,571,192 – 14,571,289	- - - - - - - -	20166	14,571,192 – 14,571,289	+	6	100	69.02	-0.84	0.55	0.679001
14647	dm3.chrX	14,576,052 – 14,576,144	- - - - - - - -	20167	14,576,052 – 14,576,144	+	3	92	97.10	-1.87	0.98	0.948079
14648	dm3.chrX	14,577,092 – 14,577,183	- - - - - - - -	20168	14,577,092 – 14,577,183	-	9	92	85.50	-2.10	0.66	0.799121
14649	dm3.chrX	14,578,584 – 14,578,678	- - - - - - - -	20169	14,578,584 – 14,578,678	+	3	122	72.30	-1.68	0.63	0.838645
14650	dm3.chrX	14,585,674 – 14,585,781	- - CDS="CDS;ID=CDS_FBgn0015774:2_1021;Name=NetB-cds;Parent=FBtr0304874,FBtr0304875;parent_type=mRNA" - - - - -	20170	14,585,674 – 14,585,781	-	12	108	80.73	-1.05	0.75	0.747927
14651	dm3.chrX	14,590,776 – 14,590,910	- - - intron="intron;ID=intron_FBgn0015774:7_FBgn0015774:6;Name=NetB-in;Parent=FBtr0073940,FBtr0302016,FBtr0302017,FBtr0302018,FBtr0304874,FBtr0304875;parent_type=mRNA" - - - -	20171	14,590,776 – 14,590,866	-	5	107	64.88	-1.23	0.63	0.970997
14651	dm3.chrX	14,590,776 – 14,590,910		20172	14,590,820 – 14,590,910	+	7	90	76.07	-1.61	0.50	0.526791
14652	dm3.chrX	14,592,692 – 14,592,742	- - - intron="intron;ID=intron_FBgn0015774:7_FBgn0015774:6;Name=NetB-in;Parent=FBtr0073940,FBtr0302016,FBtr0302017,FBtr0302018,FBtr0304874,FBtr0304875;parent_type=mRNA" - - - -	20173	14,592,692 – 14,592,742	+	3	50	94.67	-1.87	0.91	0.860471
14653	dm3.chrX	14,593,243 – 14,593,341	- - - intron="intron;ID=intron_FBgn0015774:7_FBgn0015774:6;Name=NetB-in;Parent=FBtr0073940,FBtr0302016,FBtr0302017,FBtr0302018,FBtr0304874,FBtr0304875;parent_type=mRNA" - - - -	20174	14,593,243 – 14,593,341	+	5	117	90.15	-2.01	0.93	0.964216
14653	dm3.chrX	14,593,243 – 14,593,341		20175	14,593,243 – 14,593,341	-	5	117	90.15	-1.86	0.95	0.960518
14654	dm3.chrX	14,604,582 – 14,604,672	- - - - - - - -	20176	14,604,582 – 14,604,672	+	8	100	53.80	-0.58	0.40	0.731458
14655	dm3.chrX	14,609,799 – 14,609,914	- - - - - - - -	20177	14,609,799 – 14,609,914	-	5	118	92.78	-2.17	0.80	0.802546
14656	dm3.chrX	14,621,918 – 14,622,050	- - - - - - - -	20178	14,621,918 – 14,622,050	-	6	140	75.25	-1.16	0.58	0.548765
14657	dm3.chrX	14,624,443 – 14,624,550	- - - - - - - -	20179	14,624,443 – 14,624,550	+	6	114	69.29	-1.43	0.43	0.722085
14657	dm3.chrX	14,624,443 – 14,624,550	- - - - - - - -	20180	14,624,443 – 14,624,550	-	6	114	69.29	-2.35	0.53	0.997161
14658	dm3.chrX	14,626,831 – 14,626,941	- - - - - - - -	20181	14,626,831 – 14,626,941	+	6	120	70.68	-2.12	0.74	0.995775
14659	dm3.chrX	14,627,047 – 14,627,154	- - - - - - - -	20182	14,627,047 – 14,627,154	-	4	108	97.98	-2.14	0.96	0.959187
14660	dm3.chrX	14,631,119 – 14,631,211	- - - - - - - -	20183	14,631,119 – 14,631,211	-	11	112	77.56	-2.91	0.57	0.996332
14661	dm3.chrX	14,633,544 – 14,633,606	- - - - - - - -	20184	14,633,544 – 14,633,606	-	9	70	75.59	-1.57	0.60	0.869442
14662	dm3.chrX	14,633,657 – 14,633,750	- - - - - - - -	20185	14,633,657 – 14,633,750	+	5	117	82.55	-1.76	0.71	0.718444
14663	dm3.chrX	14,643,444 – 14,643,501	- - - - - - - -	20186	14,643,444 – 14,643,501	-	6	57	81.40	-2.62	0.68	0.989593
14664	dm3.chrX	14,652,237 – 14,652,331	- - CDS="CDS;ID=CDS_CG15890:5_896;Name=CG15890-cds;Parent=FBtr0073939;parent_type=mRNA" - - - - -	20187	14,652,237 – 14,652,331	+	14	108	67.60	-1.93	0.25	0.595046
14665	dm3.chrX	14,655,878 – 14,655,996	- - - intron="intron;ID=intron_CG15890:1_CG15890:2;Name=CG15890-in;Parent=FBtr0073939;parent_type=mRNA" - - - -	20188	14,655,878 – 14,655,973	+	6	95	63.71	-0.86	0.40	0.513035
14665	dm3.chrX	14,655,878 – 14,655,996		20189	14,655,896 – 14,655,996	-	6	101	65.59	-1.84	0.27	0.507416
14666	dm3.chrX	14,656,142 – 14,656,197	- - - intron="intron;ID=intron_CG15890:1_CG15890:2;Name=CG15890-in;Parent=FBtr0073939;parent_type=mRNA" - - - -	20190	14,656,142 – 14,656,197	-	6	55	68.09	-0.36	0.69	0.655337
14667	dm3.chrX	14,657,440 – 14,657,581	- - - intron="intron;ID=intron_CG15890:1_CG15890:2;Name=CG15890-in;Parent=FBtr0073939;parent_type=mRNA" - - - -	20191	14,657,440 – 14,657,549	+	4	111	53.81	-0.86	0.44	0.785768
				20192	14,657,440 – 14,657,549	-	4	111	53.81	-0.90	0.39	0.586081
				20193	14,657,473 – 14,657,581	-	5	110	60.78	-1.23	0.40	0.798520
14668	dm3.chrX	14,683,909 – 14,684,029	- - CDS="CDS;ID=CDS_FBgn0003301:2_1027;Name=rut-cds;Parent=FBtr0073992;parent_type=mRNA" - - - - -	20194	14,683,909 – 14,684,029	-	13	120	85.96	-1.57	0.73	0.700705
14669	dm3.chrX	14,686,057 – 14,686,170	- - CDS="CDS;ID=CDS_FBgn0003301:4_1031;Name=rut-cds;Parent=FBtr0305581;parent_type=mRNA" - - - - -	20195	14,686,057 – 14,686,155	-	14	120	75.20	-2.00	0.41	0.792928
				20196	14,686,065 – 14,686,170	+	14	120	77.58	-2.78	0.29	0.761137
				20197	14,686,065 – 14,686,170	-	14	120	77.58	-2.36	0.45	0.938942
14670	dm3.chrX	14,699,310 – 14,699,426	- - - intron="intron;ID=intron_FBgn0003301:19_FBgn0003301:18;Name=rut-in;Parent=FBtr0073992,FBtr0305581;parent_type=mRNA" - - - -	20198	14,699,310 – 14,699,426	+	5	120	76.58	-1.42	0.62	0.637720
14671	dm3.chrX	14,699,603 – 14,699,708	- - - intron="intron;ID=intron_FBgn0003301:19_FBgn0003301:18;Name=rut-in;Parent=FBtr0073992,FBtr0305581;parent_type=mRNA" - - - -	20199	14,699,603 – 14,699,708	-	3	105	83.71	-2.60	0.74	0.956969
14672	dm3.chrX	14,703,480 – 14,703,600	- - - intron="intron;ID=intron_FBgn0003301:19_FBgn0003301:18;Name=rut-in;Parent=FBtr0073992,FBtr0305581;parent_type=mRNA" - - - -	20200	14,703,480 – 14,703,600	+	5	120	89.03	-1.57	0.79	0.506500
14672	dm3.chrX	14,703,480 – 14,703,600		20201	14,703,480 – 14,703,600	-	5	120	89.03	-1.70	0.90	0.905666
14673	dm3.chrX	14,720,024 – 14,720,134	- - - - - - - -	20202	14,720,024 – 14,720,134	-	5	110	86.51	-1.32	0.82	0.547979
14674	dm3.chrX	14,736,466 – 14,736,521	- - - intron="intron;ID=intron_FBgn0024753:3_FBgn0024753:4;Name=Flo-2-in;Parent=FBtr0073949,FBtr0073950,FBtr0073951,FBtr0073952;parent_type=mRNA" - - - -	20203	14,736,466 – 14,736,521	-	5	55	73.82	-1.99	0.45	0.815251
14675	dm3.chrX	14,747,764 – 14,747,872	- - - - - - - -	20204	14,747,764 – 14,747,862	-	7	108	58.26	-1.44	0.37	0.954622
14675	dm3.chrX	14,747,764 – 14,747,872	- - - - - - - -	20205	14,747,774 – 14,747,872	-	7	105	60.54	-1.66	0.29	0.841061
14676	dm3.chrX	14,750,934 – 14,751,001	- - - - - - - -	20206	14,750,934 – 14,751,001	+	4	70	83.45	-1.52	0.81	0.736443
14677	dm3.chrX	14,757,440 – 14,757,533	- - - - - - - -	20207	14,757,440 – 14,757,533	-	5	93	84.59	-1.68	0.74	0.668385
14678	dm3.chrX	14,777,993 – 14,778,083	- - - - - - - -	20208	14,777,993 – 14,778,083	+	5	90	96.44	-2.32	0.91	0.951068
14679	dm3.chrX	14,786,599 – 14,786,731	- - - intron="intron;ID=intron_FBgn0030592:3_FBgn0030592:2;Name=CG9514-in;Parent=FBtr0073980;parent_type=mRNA" - - - -	20209	14,786,599 – 14,786,695	-	5	96	83.74	-2.50	0.66	0.948500
14679	dm3.chrX	14,786,599 – 14,786,731		20210	14,786,635 – 14,786,731	-	5	100	93.56	-2.96	0.83	0.981255
14680	dm3.chrX	14,786,869 – 14,786,977	- - - intron="intron;ID=intron_FBgn0030592:3_FBgn0030592:2;Name=CG9514-in;Parent=FBtr0073980;parent_type=mRNA" - - - -	20211	14,786,869 – 14,786,977	+	5	111	85.05	-2.16	0.75	0.923253
14681	dm3.chrX	14,792,043 – 14,792,154	- - - - - - - -	20212	14,792,043 – 14,792,154	-	5	111	90.90	-1.20	0.90	0.578856
14682	dm3.chrX	14,792,194 – 14,792,301	- - - - - - - -	20213	14,792,194 – 14,792,301	-	5	119	92.78	-3.38	0.80	0.991947
14683	dm3.chrX	14,792,902 – 14,792,963	- - - - - - - -	20214	14,792,902 – 14,792,963	+	8	61	86.66	-2.73	0.70	0.974811
14683	dm3.chrX	14,792,902 – 14,792,963	- - - - - - - -	20215	14,792,902 – 14,792,963	-	8	61	86.66	-1.76	0.68	0.506778
14684	dm3.chrX	14,793,590 – 14,793,756	- - - - - - - -	20216	14,793,590 – 14,793,690	+	7	113	70.51	-2.30	0.30	0.682074
				20217	14,793,628 – 14,793,729	-	8	117	69.84	-1.38	0.51	0.937984
				20218	14,793,650 – 14,793,756	-	6	114	86.56	-2.10	0.76	0.908955
14685	dm3.chrX	14,822,263 – 14,822,379	- - CDS="CDS;ID=CDS_FBgn0052591:1_964;Name=CG32591-cds;Parent=FBtr0073973;parent_type=mRNA" intron="intron;ID=intron_FBgn0024753:7_FBgn0024753:12;Name=Flo-2-in;Parent=FBtr0073949,FBtr0073950,FBtr0073951,FBtr0073952;parent_type=mRNA" - - - -	20219	14,822,263 – 14,822,379	-	3	120	91.57	-1.81	0.82	0.582442
14686	dm3.chrX	14,840,789 – 14,840,909	- - - intron="intron;ID=intron_FBgn0027601:6_FBgn0027601:4;Name=CG9009-in;Parent=FBtr0303294;parent_type=mRNA" - - - -	20220	14,840,789 – 14,840,909	-	5	120	69.70	-2.46	0.48	0.990206
14687	dm3.chrX	14,846,841 – 14,846,905	- - - - - - - -	20221	14,846,841 – 14,846,905	+	3	67	46.46	-1.19	0.37	0.811962
14688	dm3.chrX	14,852,563 – 14,852,650	- - - intron="intron;ID=intron_FBgn0000535:2_FBgn0000535:3;Name=eag-in;Parent=FBtr0111009,FBtr0073955,FBtr0303285,FBtr0303286;parent_type=mRNA" - - - -	20222	14,852,563 – 14,852,650	+	4	102	78.17	-1.97	0.61	0.786262
14689	dm3.chrX	14,852,759 – 14,852,886	- - - intron="intron;ID=intron_FBgn0000535:2_FBgn0000535:3;Name=eag-in;Parent=FBtr0111009,FBtr0073955,FBtr0303285,FBtr0303286;parent_type=mRNA" - - - -	20223	14,852,759 – 14,852,886	+	5	155	51.42	-1.25	0.31	0.757031
14690	dm3.chrX	14,855,939 – 14,855,992	- - - intron="intron;ID=intron_FBgn0000535:2_FBgn0000535:3;Name=eag-in;Parent=FBtr0111009,FBtr0073955,FBtr0303285,FBtr0303286;parent_type=mRNA" - - - -	20224	14,855,939 – 14,855,992	-	6	67	64.51	-1.39	0.48	0.854305
14691	dm3.chrX	14,857,376 – 14,857,429	- - - intron="intron;ID=intron_FBgn0000535:2_FBgn0000535:3;Name=eag-in;Parent=FBtr0111009,FBtr0073955,FBtr0303285,FBtr0303286;parent_type=mRNA" - - - -	20225	14,857,376 – 14,857,429	-	6	58	73.34	-0.98	0.61	0.594558
14692	dm3.chrX	14,858,309 – 14,858,384	- - - intron="intron;ID=intron_FBgn0000535:2_FBgn0000535:3;Name=eag-in;Parent=FBtr0111009,FBtr0073955,FBtr0303285,FBtr0303286;parent_type=mRNA" - - - -	20226	14,858,309 – 14,858,384	+	4	76	68.81	-1.36	0.49	0.630537
14693	dm3.chrX	14,874,576 – 14,874,650	- - - intron="intron;ID=intron_FBgn0000535:3_FBgn0000535:5;Name=eag-in;Parent=FBtr0111009,FBtr0073955,FBtr0303285;parent_type=mRNA" - - - -	20227	14,874,576 – 14,874,650	-	6	89	66.12	-0.80	0.54	0.542878
14694	dm3.chrX	14,876,401 – 14,876,484	- - - intron="intron;ID=intron_FBgn0000535:3_FBgn0000535:5;Name=eag-in;Parent=FBtr0111009,FBtr0073955,FBtr0303285;parent_type=mRNA" - - - -	20228	14,876,401 – 14,876,484	+	8	84	61.48	-1.20	0.29	0.552434
14695	dm3.chrX	14,876,942 – 14,877,040	- - - intron="intron;ID=intron_FBgn0000535:3_FBgn0000535:5;Name=eag-in;Parent=FBtr0111009,FBtr0073955,FBtr0303285;parent_type=mRNA" - - - -	20229	14,876,942 – 14,877,040	+	5	107	83.64	-1.69	0.72	0.659697
14696	dm3.chrX	14,880,971 – 14,881,070	- - - intron="intron;ID=intron_FBgn0000535:5_FBgn0000535:6;Name=eag-in;Parent=FBtr0111009,FBtr0073955,FBtr0303285;parent_type=mRNA" - - - -	20230	14,880,971 – 14,881,070	+	5	99	90.65	-1.33	0.94	0.820204
14697	dm3.chrX	14,885,078 – 14,885,153	- - - intron="intron;ID=intron_FBgn0000535:6_FBgn0000535:7;Name=eag-in;Parent=FBtr0111009,FBtr0073955,FBtr0303286;parent_type=mRNA" - - - -	20231	14,885,078 – 14,885,153	+	6	80	73.73	-0.65	0.78	0.775410
14697	dm3.chrX	14,885,078 – 14,885,153		20232	14,885,078 – 14,885,153	-	6	80	73.73	-1.50	0.61	0.935087
14698	dm3.chrX	14,889,416 – 14,889,522	- - - intron="intron;ID=intron_FBgn0000535:10_FBgn0000535:11;Name=eag-in;Parent=FBtr0111009,FBtr0073955,FBtr0303285,FBtr0303286;parent_type=mRNA" - - - -	20233	14,889,416 – 14,889,512	+	7	102	62.86	-1.23	0.32	0.554601
14698	dm3.chrX	14,889,416 – 14,889,522		20234	14,889,426 – 14,889,522	+	6	102	71.74	-1.37	0.47	0.661411
14699	dm3.chrX	14,896,442 – 14,896,534	- - - intron="intron;ID=intron_FBgn0000535:19_FBgn0000535:20;Name=eag-in;Parent=FBtr0111009,FBtr0303286;parent_type=mRNA" - - - -	20235	14,896,442 – 14,896,534	+	4	103	88.74	-1.49	0.87	0.714759
14700	dm3.chrX	14,905,559 – 14,905,649	- - - - - - - -	20236	14,905,559 – 14,905,649	-	11	96	65.23	-0.90	0.46	0.915672
14701	dm3.chrX	14,920,905 – 14,921,003	- - - intron="intron;ID=intron_CG32594:1_CG32594:2;Name=be-in;Parent=FBtr0073956,FBtr0073957;parent_type=mRNA" - - - -	20237	14,920,905 – 14,921,003	+	7	120	63.04	-1.67	0.32	0.657008
14702	dm3.chrX	14,922,275 – 14,922,378	- - - intron="intron;ID=intron_CG32594:1_CG32594:2;Name=be-in;Parent=FBtr0073956,FBtr0073957;parent_type=mRNA" - - - -	20238	14,922,275 – 14,922,377	+	6	116	66.44	-1.44	0.42	0.787807
14702	dm3.chrX	14,922,275 – 14,922,378		20239	14,922,275 – 14,922,378	+	6	116	66.75	-1.56	0.44	0.895016
14703	dm3.chrX	14,923,702 – 14,923,841	- - - intron="intron;ID=intron_CG32594:1_CG32594:2;Name=be-in;Parent=FBtr0073956,FBtr0073957;parent_type=mRNA" - - - -	20240	14,923,702 – 14,923,841	+	5	145	62.77	-2.06	0.39	0.949659
14704	dm3.chrX	14,935,716 – 14,935,815	- - - - - - - -	20241	14,935,716 – 14,935,815	-	4	119	82.13	-1.76	0.78	0.836310
14705	dm3.chrX	14,941,431 – 14,941,529	- - - intron="intron;ID=intron_CG5541:1_CG5541:2;Name=CG5541-in;Parent=FBtr0073958;parent_type=mRNA" - - - -	20242	14,941,431 – 14,941,529	+	5	98	75.05	-0.54	0.84	0.535682
14706	dm3.chrX	14,945,206 – 14,945,309	- - - - - - - -	20243	14,945,206 – 14,945,309	+	5	106	89.09	-1.72	0.88	0.875439
14707	dm3.chrX	14,954,538 – 14,954,631	- - CDS="CDS;ID=CDS_FBgn0030600:22_933;Name=hiw-cds;Parent=FBtr0073970;parent_type=mRNA" - - - - -	20244	14,954,538 – 14,954,631	-	6	104	65.77	-1.24	0.45	0.642818
14708	dm3.chrX	14,955,628 – 14,955,730	- - - intron="intron;ID=intron_FBgn0030600:23_FBgn0030600:22;Name=hiw-in;Parent=FBtr0073970;parent_type=mRNA" - - - -	20245	14,955,628 – 14,955,730	-	6	119	75.11	-1.82	0.60	0.921368
14709	dm3.chrX	14,959,350 – 14,959,445	- - - - - - - -	20246	14,959,350 – 14,959,445	+	4	95	93.86	-1.76	0.85	0.637265
14709	dm3.chrX	14,959,350 – 14,959,445	- - - - - - - -	20247	14,959,350 – 14,959,445	-	4	95	93.86	-3.29	0.86	0.993055
14710	dm3.chrX	14,972,146 – 14,972,241	- - - - - - - -	20248	14,972,146 – 14,972,241	+	4	110	78.29	-2.26	0.67	0.962498
14711	dm3.chrX	14,973,219 – 14,973,317	- - - - - - - -	20249	14,973,219 – 14,973,317	-	5	98	62.77	-1.00	0.45	0.604354
14712	dm3.chrX	14,984,730 – 14,984,840	- - - - - - - -	20250	14,984,730 – 14,984,840	-	6	120	81.58	-3.39	0.78	0.998777
14713	dm3.chrX	14,985,940 – 14,986,037	- - - - - - - -	20251	14,985,940 – 14,986,037	-	7	104	61.48	-1.29	0.32	0.655197
14714	dm3.chrX	14,986,344 – 14,986,514	- - - - - - - -	20252	14,986,344 – 14,986,458	+	6	120	68.42	-3.13	0.50	0.999598
				20253	14,986,344 – 14,986,458	-	6	120	68.42	-2.00	0.40	0.939498
				20254	14,986,381 – 14,986,488	+	5	120	85.29	-3.79	0.68	0.997674
				20255	14,986,381 – 14,986,488	-	5	120	85.29	-2.69	0.64	0.934274
				20256	14,986,418 – 14,986,514	+	6	109	72.45	-2.22	0.51	0.978491
14715	dm3.chrX	14,990,339 – 14,990,433	- - - intron="intron;ID=intron_FBgn0030613:8_FBgn0030613:11;Name=rab3-GEF-in;Parent=FBtr0073993;parent_type=mRNA" - - - -	20257	14,990,339 – 14,990,433	+	6	98	72.57	-2.29	0.81	0.997792
14716	dm3.chrX	14,992,609 – 14,992,747	- - CDS="CDS;ID=CDS_FBgn0030613:11_907;Name=rab3-GEF-cds;Parent=FBtr0073993;parent_type=mRNA" - - - - -	20258	14,992,609 – 14,992,747	-	11	138	71.06	-1.49	0.37	0.632399
14717	dm3.chrX	15,022,995 – 15,023,115	- - - intron="intron;ID=intron_CG33968:1_CG33968:2;Name=drd-in;Parent=FBtr0100009;parent_type=mRNA" - - - -	20259	15,022,995 – 15,023,115	+	5	120	82.79	-1.81	0.70	0.745625
14718	dm3.chrX	15,025,983 – 15,026,138	- - - intron="intron;ID=intron_CG33968:2_CG33968:3;Name=drd-in;Parent=FBtr0100009;parent_type=mRNA" - - - -	20260	15,025,983 – 15,026,138	+	7	157	78.77	-1.94	0.49	0.639183
14718	dm3.chrX	15,025,983 – 15,026,138		20261	15,025,983 – 15,026,138	-	7	157	78.77	-2.44	0.52	0.947715
14719	dm3.chrX	15,027,087 – 15,027,180	- - - intron="intron;ID=intron_CG33968:2_CG33968:3;Name=drd-in;Parent=FBtr0100009;parent_type=mRNA" - - - -	20262	15,027,087 – 15,027,180	-	4	93	82.93	-1.83	0.65	0.500000
14720	dm3.chrX	15,053,177 – 15,053,281	- - - intron="intron;ID=intron_FBgn0030617:11_FBgn0030617:10;Name=CG9095-in;Parent=FBtr0074026,FBtr0112984;parent_type=mRNA" - - - -	20263	15,053,177 – 15,053,281	-	7	115	81.24	-2.37	0.53	0.793818
14721	dm3.chrX	15,072,576 – 15,072,717	- - CDS="CDS;ID=CDS_FBgn0030618:1_908;Name=CG15028-cds;Parent=FBtr0073996;parent_type=mRNA" - - - - -	20264	15,072,576 – 15,072,717	+	6	149	73.22	-1.61	0.59	0.936665
14722	dm3.chrX	15,074,339 – 15,074,442	- - CDS="CDS;ID=CDS_FBgn0030618:2_950;Name=CG15028-cds;Parent=FBtr0112985;parent_type=mRNA" - - - - -	20265	15,074,339 – 15,074,442	+	5	103	79.20	-1.93	0.56	0.665016
14723	dm3.chrX	15,078,305 – 15,078,402	- - - intron="intron;ID=intron_CG15029:2_CG15029:3;Name=CG15029-in;Parent=FBtr0073998;parent_type=mRNA" - - - -	20266	15,078,305 – 15,078,402	-	6	97	75.33	-1.54	0.49	0.679311
14724	dm3.chrX	15,080,933 – 15,081,024	- - CDS="CDS;ID=CDS_CG15029:4_896;Name=CG15029-cds;Parent=FBtr0073998;parent_type=mRNA" - - - - -	20267	15,080,933 – 15,081,024	-	5	100	69.56	-1.70	0.57	0.952643
14725	dm3.chrX	15,091,953 – 15,092,059	- - - - - - - -	20268	15,091,953 – 15,092,059	+	6	120	69.91	-1.20	0.46	0.500000
14726	dm3.chrX	15,092,133 – 15,092,233	- - - - - - - -	20269	15,092,133 – 15,092,233	+	6	120	60.69	-1.69	0.39	0.941569
14727	dm3.chrX	15,106,358 – 15,106,448	- - - - - - - -	20270	15,106,358 – 15,106,448	+	6	106	74.35	-1.33	0.55	0.580669
14727	dm3.chrX	15,106,358 – 15,106,448	- - - - - - - -	20271	15,106,358 – 15,106,448	-	6	106	74.35	-1.96	0.57	0.950655
14728	dm3.chrX	15,107,717 – 15,107,814	- - - - - - - -	20272	15,107,717 – 15,107,814	-	6	104	81.48	-1.81	0.62	0.724781
14729	dm3.chrX	15,112,265 – 15,112,367	- - - - - - - -	20273	15,112,265 – 15,112,367	-	4	102	85.71	-2.50	0.72	0.938686
14730	dm3.chrX	15,125,589 – 15,125,748	- - - - - - - -	20274	15,125,589 – 15,125,748	-	3	174	66.86	-2.30	0.48	0.941002
14731	dm3.chrX	15,128,121 – 15,128,225	- - - - - - - -	20275	15,128,121 – 15,128,225	+	7	115	76.66	-2.11	0.67	0.988933
14731	dm3.chrX	15,128,121 – 15,128,225	- - - - - - - -	20276	15,128,121 – 15,128,225	-	7	115	76.66	-1.51	0.56	0.758472
14732	dm3.chrX	15,133,404 – 15,133,522	- - - - - - - -	20277	15,133,404 – 15,133,522	-	6	121	78.94	-2.11	0.73	0.983437
14733	dm3.chrX	15,147,719 – 15,147,819	- - - - - - - -	20278	15,147,719 – 15,147,819	-	5	102	56.66	-2.03	0.24	0.853062
14734	dm3.chrX	15,149,486 – 15,149,623	- - - - - - - -	20279	15,149,486 – 15,149,594	-	10	115	71.09	-0.63	0.65	0.878327
14734	dm3.chrX	15,149,486 – 15,149,623	- - - - - - - -	20280	15,149,514 – 15,149,623	-	8	120	69.59	-0.36	0.61	0.500000
14735	dm3.chrX	15,156,127 – 15,156,230	- - - - - - - -	20281	15,156,127 – 15,156,230	-	11	112	70.15	-1.43	0.60	0.990362
14736	dm3.chrX	15,157,644 – 15,157,779	- - - - - - - -	20282	15,157,644 – 15,157,742	+	9	103	80.52	-1.14	0.65	0.526220
14736	dm3.chrX	15,157,644 – 15,157,779	- - - - - - - -	20283	15,157,673 – 15,157,779	-	10	117	75.69	-1.79	0.44	0.690621
14737	dm3.chrX	15,161,105 – 15,161,182	- - - - - - - -	20284	15,161,105 – 15,161,182	+	10	81	70.42	-1.89	0.49	0.977590
14737	dm3.chrX	15,161,105 – 15,161,182	- - - - - - - -	20285	15,161,105 – 15,161,182	-	10	81	70.42	-1.01	0.47	0.519992
14738	dm3.chrX	15,161,321 – 15,161,435	- - - - - - - -	20286	15,161,321 – 15,161,435	+	5	114	81.44	-1.82	0.74	0.893863
14739	dm3.chrX	15,162,630 – 15,162,733	- - - - - - - -	20287	15,162,630 – 15,162,733	+	5	103	77.71	-1.94	0.59	0.756099
14739	dm3.chrX	15,162,630 – 15,162,733	- - - - - - - -	20288	15,162,630 – 15,162,733	-	5	103	77.71	-1.99	0.52	0.563471
14740	dm3.chrX	15,167,700 – 15,167,786	- - - - - - - -	20289	15,167,700 – 15,167,786	-	5	91	78.56	-2.13	0.72	0.972857
14741	dm3.chrX	15,169,331 – 15,169,439	- - - - - - - -	20290	15,169,331 – 15,169,439	+	5	113	73.67	-1.53	0.48	0.522437
14742	dm3.chrX	15,171,074 – 15,171,258	- - - - - - - -	20291	15,171,074 – 15,171,258	+	4	184	91.93	-1.81	0.80	0.539605
14743	dm3.chrX	15,175,084 – 15,175,177	- - - - - - - -	20292	15,175,084 – 15,175,177	-	10	102	79.35	-0.70	0.79	0.587535
14744	dm3.chrX	15,184,813 – 15,184,885	- - - - - - - -	20293	15,184,813 – 15,184,885	+	8	73	82.76	-1.75	0.72	0.892564
14745	dm3.chrX	15,185,598 – 15,185,690	- - - - - - - -	20294	15,185,598 – 15,185,690	-	4	92	72.73	-1.54	0.73	0.923633
14746	dm3.chrX	15,192,623 – 15,192,746	- - - - - - - -	20295	15,192,623 – 15,192,746	-	6	129	76.83	-1.59	0.67	0.904545
14747	dm3.chrX	15,193,826 – 15,193,944	- - - intron="intron;ID=intron_FBgn0261703:1_FBgn0261703:4;Name=gce-in;Parent=FBtr0303198;parent_type=mRNA" - - - -	20296	15,193,826 – 15,193,944	-	5	120	78.86	-1.93	0.63	0.847097
14748	dm3.chrX	15,195,939 – 15,196,068	- - - intron="intron;ID=intron_FBgn0261703:2_FBgn0261703:3;Name=gce-in;Parent=FBtr0303199;parent_type=mRNA" - - - -	20297	15,195,939 – 15,196,068	-	8	152	74.32	-2.09	0.49	0.917171
14749	dm3.chrX	15,197,014 – 15,197,115	- - - intron="intron;ID=intron_FBgn0261703:2_FBgn0261703:3;Name=gce-in;Parent=FBtr0303199;parent_type=mRNA" - - - -	20298	15,197,014 – 15,197,115	+	3	102	87.54	-2.03	0.71	0.505778
14750	dm3.chrX	15,217,695 – 15,217,793	- - - intron="intron;ID=intron_CG6146:9_CG6146:2;Name=Top1-in;Parent=FBtr0074005,FBtr0100294;parent_type=mRNA" - - - -	20299	15,217,695 – 15,217,793	+	7	119	65.69	-1.30	0.44	0.769206
14751	dm3.chrX	15,236,138 – 15,236,225	- - - - - - - -	20300	15,236,138 – 15,236,225	+	5	89	65.00	-4.10	0.42	0.999914
14751	dm3.chrX	15,236,138 – 15,236,225	- - - - - - - -	20301	15,236,138 – 15,236,225	-	5	89	65.00	-2.52	0.30	0.952958
14752	dm3.chrX	15,239,904 – 15,239,957	- - - intron="intron;ID=intron_CG6227:2_CG6227:3;Name=CG6227-in;Parent=FBtr0074011;parent_type=mRNA" - - - -	20302	15,239,904 – 15,239,957	+	3	63	54.75	-1.90	0.42	0.939191
14753	dm3.chrX	15,250,942 – 15,251,045	- - - intron="intron;ID=intron_FBgn0000028:8_FBgn0000028:7;Name=acj6-in;Parent=FBtr0074015,FBtr0100328,FBtr0290063,FBtr0290064,FBtr0305191,FBtr0305195;parent_type=mRNA" - - - -	20303	15,250,942 – 15,251,045	-	7	108	63.38	-1.27	0.35	0.607105
14754	dm3.chrX	15,261,079 – 15,261,198	- - - - - - - -	20304	15,261,079 – 15,261,179	-	11	109	65.94	-1.68	0.31	0.754950
14754	dm3.chrX	15,261,079 – 15,261,198	- - - - - - - -	20305	15,261,107 – 15,261,198	-	12	108	62.69	-0.94	0.37	0.521616
14755	dm3.chrX	15,272,231 – 15,272,473	- - CDS="CDS;ID=CDS_FBgn0000028:11_955;Name=acj6-cds;Parent=FBtr0290063,FBtr0290064,FBtr0305195;parent_type=mRNA" - - - - -	20306	15,272,231 – 15,272,351	+	13	120	92.22	-2.56	0.70	0.881488
				20307	15,272,303 – 15,272,423	+	13	120	92.84	-2.15	0.73	0.667957
				20308	15,272,423 – 15,272,473	+	9	57	81.13	-2.28	0.70	0.968419
14756	dm3.chrX	15,277,020 – 15,277,115	- - - intron="intron;ID=intron_CG9164:8_CG9164:2;Name=CG9164-in;Parent=FBtr0074014;parent_type=mRNA" - - - -	20309	15,277,020 – 15,277,115	-	4	102	85.19	-2.48	0.62	0.801989
14757	dm3.chrX	15,281,454 – 15,281,561	- - - - - - - -	20310	15,281,454 – 15,281,558	+	6	116	65.43	-1.66	0.34	0.693044
				20311	15,281,454 – 15,281,558	-	6	116	65.43	-2.18	0.23	0.527631
				20312	15,281,455 – 15,281,561	+	6	116	65.79	-1.90	0.32	0.790408
				20313	15,281,455 – 15,281,561	-	6	116	65.79	-2.38	0.22	0.660068
14758	dm3.chrX	15,285,207 – 15,285,325	- - - intron="intron;ID=intron_CG9176:12_CG9176:13;Name=cngl-in;Parent=FBtr0089293;parent_type=mRNA" - - - -	20314	15,285,207 – 15,285,325	-	4	122	85.83	-1.80	0.79	0.778807
14759	dm3.chrX	15,294,966 – 15,295,056	- - - intron="intron;ID=intron_CG9176:15_CG9176:17;Name=cngl-in;Parent=FBtr0089294,FBtr0089293;parent_type=mRNA" - - - -	20315	15,294,966 – 15,295,056	+	7	97	70.45	-0.70	0.61	0.568357
14759	dm3.chrX	15,294,966 – 15,295,056		20316	15,294,966 – 15,295,056	-	7	97	70.45	-1.25	0.64	0.936772
14760	dm3.chrX	15,298,932 – 15,299,033	- - - - - - - -	20317	15,298,932 – 15,299,033	+	5	109	72.18	-1.31	0.55	0.622685
14761	dm3.chrX	15,305,183 – 15,305,323	- - - intron="intron;ID=intron_CG18210:3_CG18210:4;Name=CG18210-in;Parent=FBtr0074081;parent_type=mRNA" - - - -	20318	15,305,183 – 15,305,323	-	6	168	67.74	-1.93	0.42	0.898102
14762	dm3.chrX	15,321,116 – 15,321,208	- - - intron="intron;ID=intron_CG18210:1_CG18210:2;Name=CG18210-in;Parent=FBtr0074081;parent_type=mRNA" - - - -	20319	15,321,116 – 15,321,208	-	6	102	71.23	-1.44	0.55	0.909186
14763	dm3.chrX	15,330,748 – 15,330,822	- - - intron="intron;ID=intron_CG18210:1_CG18210:2;Name=CG18210-in;Parent=FBtr0074081;parent_type=mRNA" - - - -	20320	15,330,748 – 15,330,822	-	7	83	63.80	-1.36	0.40	0.782250
14764	dm3.chrX	15,332,307 – 15,332,424	- - - intron="intron;ID=intron_CG18210:1_CG18210:2;Name=CG18210-in;Parent=FBtr0074081;parent_type=mRNA" - - - -	20321	15,332,307 – 15,332,424	+	3	118	93.50	-1.73	0.87	0.679840
14765	dm3.chrX	15,333,775 – 15,333,865	- - - intron="intron;ID=intron_CG18210:1_CG18210:2;Name=CG18210-in;Parent=FBtr0074081;parent_type=mRNA" - - - -	20322	15,333,775 – 15,333,865	+	8	96	73.31	-0.90	0.63	0.731431
14766	dm3.chrX	15,343,036 – 15,343,152	- - - intron="intron;ID=intron_FBgn0040285:4_FBgn0040285:3;Name=Scamp-in;Parent=FBtr0074079;parent_type=mRNA" - - - -	20323	15,343,036 – 15,343,152	-	4	120	79.72	-2.15	0.54	0.628696
14767	dm3.chrX	15,344,211 – 15,344,318	- - - - - - - -	20324	15,344,211 – 15,344,318	-	6	108	70.80	-1.13	0.54	0.801690
14768	dm3.chrX	15,346,514 – 15,346,582	- - - - - - - -	20325	15,346,514 – 15,346,582	-	6	68	70.54	-1.33	0.71	0.980401
14769	dm3.chrX	15,354,880 – 15,354,970	- - - - - - - -	20326	15,354,880 – 15,354,970	-	11	107	62.97	-0.99	0.42	0.850432
14770	dm3.chrX	15,355,680 – 15,355,800	- - CDS="CDS;ID=CDS_CG9198:1_917;Name=shtd-cds;Parent=FBtr0074077;parent_type=mRNA" - - - - -	20327	15,355,680 – 15,355,800	-	12	120	72.31	-1.07	0.42	0.500000
14771	dm3.chrX	15,370,076 – 15,370,196	- - - - - - - -	20328	15,370,076 – 15,370,196	+	4	120	79.03	-2.07	0.57	0.725297
14771	dm3.chrX	15,370,076 – 15,370,196	- - - - - - - -	20329	15,370,076 – 15,370,196	-	4	120	79.03	-2.34	0.64	0.945136
14772	dm3.chrX	15,370,331 – 15,370,440	- - - - - - - -	20330	15,370,331 – 15,370,440	-	4	117	51.47	-1.02	0.34	0.537495
14773	dm3.chrX	15,371,189 – 15,371,249	- - - - - - - -	20331	15,371,189 – 15,371,249	+	4	60	72.41	-1.02	0.65	0.508629
14774	dm3.chrX	15,371,543 – 15,371,608	- - - - - - - -	20332	15,371,543 – 15,371,608	+	4	72	64.39	-1.09	0.52	0.648050
14775	dm3.chrX	15,372,856 – 15,372,945	- - CDS="CDS;ID=CDS_CG6324:1_909;Name=CG6324-cds;Parent=FBtr0074037;parent_type=mRNA" - - - - -	20333	15,372,856 – 15,372,945	-	5	89	60.91	-1.22	0.47	0.798713
14776	dm3.chrX	15,377,592 – 15,377,667	- - - intron="intron;ID=intron_FBgn0030648:3_FBgn0030648:5;Name=CG6340-in;Parent=FBtr0074038;parent_type=mRNA" - - - -	20334	15,377,592 – 15,377,667	+	7	85	59.96	-1.03	0.42	0.877365
14776	dm3.chrX	15,377,592 – 15,377,667		20335	15,377,592 – 15,377,667	-	7	85	59.96	-1.31	0.35	0.814480
14777	dm3.chrX	15,380,891 – 15,380,985	- - - - - - - -	20336	15,380,891 – 15,380,985	+	3	101	92.57	-2.56	1.00	0.994717
14778	dm3.chrX	15,381,138 – 15,381,189	- - - - - - - -	20337	15,381,138 – 15,381,189	-	3	51	88.24	-2.31	0.94	0.985646
14779	dm3.chrX	15,381,745 – 15,381,795	- - - intron="intron;ID=intron_FBgn0027287:2_FBgn0027287:4;Name=Gmap-in;Parent=FBtr0074042;parent_type=mRNA" - - - -	20338	15,381,745 – 15,381,795	+	5	50	91.60	-0.77	0.98	0.584463
14779	dm3.chrX	15,381,745 – 15,381,795		20339	15,381,745 – 15,381,795	-	5	50	91.60	-1.38	0.97	0.889455
14780	dm3.chrX	15,389,915 – 15,389,970	- - - intron="intron;ID=intron_FBgn0027287:2_FBgn0027287:4;Name=Gmap-in;Parent=FBtr0074042;parent_type=mRNA" - - - -	20340	15,389,915 – 15,389,970	+	4	55	76.32	-1.64	0.65	0.771130
14781	dm3.chrX	15,397,109 – 15,397,203	- - - intron="intron;ID=intron_FBgn0027287:3_FBgn0027287:4;Name=Gmap-in;Parent=FBtr0074043;parent_type=mRNA" - - - -	20341	15,397,109 – 15,397,203	+	7	102	64.38	-1.80	0.33	0.847417
14782	dm3.chrX	15,397,255 – 15,397,366	- - - intron="intron;ID=intron_FBgn0027287:3_FBgn0027287:4;Name=Gmap-in;Parent=FBtr0074043;parent_type=mRNA" - - - -	20342	15,397,255 – 15,397,366	+	5	111	81.11	-1.09	0.79	0.611422
14782	dm3.chrX	15,397,255 – 15,397,366		20343	15,397,255 – 15,397,366	-	5	111	81.11	-1.34	0.75	0.705065
14783	dm3.chrX	15,414,644 – 15,414,762	- - - intron="intron;ID=intron_CG9210:1_CG9210:2;Name=Ac13E-in;Parent=FBtr0074073,FBtr0100142;parent_type=mRNA" - - - -	20344	15,414,644 – 15,414,762	+	5	120	76.71	-1.26	0.73	0.730361
14784	dm3.chrX	15,417,907 – 15,417,999	- - - - - - - -	20345	15,417,907 – 15,417,999	+	7	112	72.27	-2.91	0.43	0.983208
14784	dm3.chrX	15,417,907 – 15,417,999	- - - - - - - -	20346	15,417,907 – 15,417,999	-	7	112	72.27	-3.70	0.61	0.999648
14785	dm3.chrX	15,420,399 – 15,420,490	- - - - - - - -	20347	15,420,399 – 15,420,490	-	4	105	64.70	-1.24	0.46	0.541332
14786	dm3.chrX	15,425,491 – 15,425,610	- - - - - - - -	20348	15,425,491 – 15,425,596	+	4	116	83.79	-2.12	0.62	0.629502
14786	dm3.chrX	15,425,491 – 15,425,610	- - - - - - - -	20349	15,425,505 – 15,425,610	+	4	116	83.21	-2.18	0.58	0.581488
14787	dm3.chrX	15,427,202 – 15,427,306	- - - - - - - -	20350	15,427,202 – 15,427,306	+	5	109	61.64	-0.76	0.45	0.574764
14788	dm3.chrX	15,440,207 – 15,440,347	- - - - - - - -	20351	15,440,207 – 15,440,314	-	5	107	70.93	-1.86	0.44	0.856291
14788	dm3.chrX	15,440,207 – 15,440,347	- - - - - - - -	20352	15,440,247 – 15,440,347	-	6	118	70.09	-2.73	0.30	0.887495
14789	dm3.chrX	15,442,957 – 15,443,090	- - - - - - - -	20353	15,442,957 – 15,443,090	+	5	154	60.57	-1.36	0.38	0.657599
14789	dm3.chrX	15,442,957 – 15,443,090	- - - - - - - -	20354	15,442,957 – 15,443,090	-	5	154	60.57	-2.80	0.41	0.998344
14790	dm3.chrX	15,444,641 – 15,444,767	- - - - - - - -	20355	15,444,641 – 15,444,749	-	5	108	96.30	-2.14	0.91	0.925198
				20356	15,444,673 – 15,444,767	+	5	116	86.77	-1.48	0.85	0.701865
				20357	15,444,673 – 15,444,767	-	5	116	86.77	-1.48	0.82	0.587785
14791	dm3.chrX	15,445,749 – 15,445,841	- - - - - - - -	20358	15,445,749 – 15,445,841	-	6	104	63.89	-0.51	0.57	0.826020
14792	dm3.chrX	15,458,310 – 15,458,408	- - - - - - - -	20359	15,458,310 – 15,458,408	-	6	98	77.25	-1.72	0.62	0.920128
14793	dm3.chrX	15,459,455 – 15,459,546	- - - - - - - -	20360	15,459,455 – 15,459,546	-	5	100	85.35	-1.93	0.82	0.923703
14794	dm3.chrX	15,487,270 – 15,487,383	- - - - - - - -	20361	15,487,270 – 15,487,383	+	3	114	92.98	-1.65	0.88	0.678256
14795	dm3.chrX	15,492,808 – 15,492,873	- - - - - - - -	20362	15,492,808 – 15,492,873	-	8	78	59.02	-1.78	0.44	0.995201
14796	dm3.chrX	15,507,334 – 15,507,427	- - - - - - - -	20363	15,507,334 – 15,507,427	-	8	106	60.28	-1.05	0.35	0.500000
14797	dm3.chrX	15,511,220 – 15,511,313	- - - intron="intron;ID=intron_CG9224:1_CG9224:2;Name=sog-in;Parent=FBtr0074063;parent_type=mRNA" - - - -	20364	15,511,220 – 15,511,313	+	5	102	73.10	-2.48	0.52	0.977731
14797	dm3.chrX	15,511,220 – 15,511,313		20365	15,511,220 – 15,511,313	-	5	102	73.10	-3.10	0.61	0.998572
14798	dm3.chrX	15,516,568 – 15,516,647	- - - intron="intron;ID=intron_CG9224:1_CG9224:2;Name=sog-in;Parent=FBtr0074063;parent_type=mRNA" - - - -	20366	15,516,568 – 15,516,647	-	11	79	79.48	-1.83	0.60	0.938914
14799	dm3.chrX	15,534,775 – 15,534,876	- - - - - - - -	20367	15,534,775 – 15,534,876	+	5	101	96.63	-1.60	0.99	0.928019
14800	dm3.chrX	15,566,558 – 15,566,661	- - - - - - - -	20368	15,566,558 – 15,566,655	-	5	97	73.23	-1.20	0.69	0.865380
14800	dm3.chrX	15,566,558 – 15,566,661	- - - - - - - -	20369	15,566,558 – 15,566,661	-	7	112	66.99	-0.83	0.52	0.756976
14801	dm3.chrX	15,568,894 – 15,569,004	- - - - - - - -	20370	15,568,894 – 15,569,004	+	6	120	82.89	-2.69	0.59	0.943234
14802	dm3.chrX	15,571,475 – 15,571,566	- - CDS="CDS;ID=CDS_FBgn0030666:4_912;Name=CG12708-cds;Parent=FBtr0074052;parent_type=mRNA" - - - - -	20371	15,571,475 – 15,571,566	+	11	103	64.38	-0.95	0.36	0.553867
14802	dm3.chrX	15,571,475 – 15,571,566		20372	15,571,475 – 15,571,566	-	11	103	64.38	-1.48	0.31	0.756532
14803	dm3.chrX	15,575,336 – 15,575,449	- - - - - - - -	20373	15,575,336 – 15,575,449	+	4	114	59.45	-1.27	0.40	0.692157
14803	dm3.chrX	15,575,336 – 15,575,449	- - - - - - - -	20374	15,575,336 – 15,575,449	-	4	114	59.45	-2.24	0.67	0.999417
14804	dm3.chrX	15,586,613 – 15,586,707	- - - - - - - -	20375	15,586,613 – 15,586,707	+	7	101	72.15	-1.16	0.51	0.526824
14804	dm3.chrX	15,586,613 – 15,586,707	- - - - - - - -	20376	15,586,613 – 15,586,707	-	7	101	72.15	-1.91	0.47	0.911403
14805	dm3.chrX	15,588,278 – 15,588,388	- - - - - - - -	20377	15,588,278 – 15,588,388	+	5	114	88.66	-2.36	0.73	0.863995
14806	dm3.chrX	15,591,870 – 15,591,971	- - - intron="intron;ID=intron_CG8128:1_CG8128:2;Name=CG8128-in;Parent=FBtr0074053;parent_type=mRNA" - - - -	20378	15,591,870 – 15,591,971	-	6	117	77.02	-1.65	0.69	0.917624
14807	dm3.chrX	15,596,123 – 15,596,236	- - CDS="CDS;ID=CDS_CG9245:5_936;Name=Pis-cds;Parent=FBtr0074058;parent_type=mRNA" - - - - -	20379	15,596,123 – 15,596,236	+	14	120	70.72	-0.79	0.46	0.659612
14808	dm3.chrX	15,606,806 – 15,606,886	- - - - - - - -	20380	15,606,806 – 15,606,886	+	4	80	69.17	-2.42	0.35	0.830435
14809	dm3.chrX	15,643,743 – 15,643,803	- - - intron="intron;ID=intron_CG8239:2_CG8239:3;Name=CG8239-in;Parent=FBtr0074087;parent_type=mRNA" - - - -	20381	15,643,743 – 15,643,803	-	4	60	75.00	-1.61	0.66	0.865062
14810	dm3.chrX	15,652,905 – 15,653,008	- - - - - - - -	20382	15,652,905 – 15,653,008	-	3	107	87.38	-1.91	0.77	0.650679
14811	dm3.chrX	15,653,851 – 15,653,941	- - - - - - - -	20383	15,653,851 – 15,653,941	+	5	101	70.37	-1.68	0.63	0.959380
14812	dm3.chrX	15,654,415 – 15,654,557	- - - intron="intron;ID=intron_CG8948:1_CG8948:18;Name=Graf-in;Parent=FBtr0074198;parent_type=mRNA" - - - -	20384	15,654,415 – 15,654,509	+	5	94	100.00	-0.95	1.00	0.596133
				20385	15,654,432 – 15,654,548	+	6	120	79.48	-2.52	0.58	0.978114
				20386	15,654,432 – 15,654,548	-	6	120	79.48	-1.20	0.71	0.659322
				20387	15,654,441 – 15,654,557	+	6	117	81.55	-2.34	0.67	0.972736
				20388	15,654,441 – 15,654,557	-	6	117	81.55	-1.91	0.72	0.936944
14813	dm3.chrX	15,656,716 – 15,656,857	- - - - - - - -	20389	15,656,716 – 15,656,819	+	4	108	65.62	-1.00	0.53	0.661663
				20390	15,656,716 – 15,656,819	-	4	108	65.62	-1.77	0.49	0.949114
				20391	15,656,750 – 15,656,857	+	4	113	64.66	-1.52	0.60	0.979406
				20392	15,656,750 – 15,656,857	-	4	113	64.66	-1.40	0.45	0.757007
14814	dm3.chrX	15,680,632 – 15,680,790	- - - intron="intron;ID=intron_FBgn0030692:1_FBgn0030692:2;Name=mRpS30-in;Parent=FBtr0074094;parent_type=mRNA" - - - -	20393	15,680,632 – 15,680,750	+	5	120	85.61	-2.16	0.72	0.869243
				20394	15,680,632 – 15,680,750	-	5	120	85.61	-2.30	0.75	0.939450
				20395	15,680,670 – 15,680,790	+	5	120	83.83	-2.06	0.64	0.740212
				20396	15,680,670 – 15,680,790	-	5	120	83.83	-3.10	0.70	0.993669
14815	dm3.chrX	15,683,439 – 15,683,539	- - - intron="intron;ID=intron_CG8497:13_CG8497:2;Name=Rhp-in;Parent=FBtr0074096;parent_type=mRNA" - - - -	20397	15,683,439 – 15,683,539	+	5	116	85.32	-2.68	0.87	0.993084
14816	dm3.chrX	15,690,044 – 15,690,187	- - - - - - - -	20398	15,690,044 – 15,690,187	+	4	144	64.05	-2.21	0.30	0.713857
14816	dm3.chrX	15,690,044 – 15,690,187	- - - - - - - -	20399	15,690,044 – 15,690,187	-	4	144	64.05	-2.23	0.28	0.623538
14817	dm3.chrX	15,690,652 – 15,690,728	- - - - - - - -	20400	15,690,652 – 15,690,728	+	5	76	80.70	-1.44	0.69	0.530330
14818	dm3.chrX	15,692,700 – 15,692,801	- - - intron="intron;ID=intron_FBgn0052581:4_FBgn0052581:3;Name=CG32581-in;Parent=FBtr0074184;parent_type=mRNA" - - - -	20401	15,692,700 – 15,692,801	-	6	116	71.10	-2.10	0.46	0.947674
14819	dm3.chrX	15,697,362 – 15,697,454	- - - - - - - -	20402	15,697,362 – 15,697,454	-	3	93	90.65	-2.35	0.80	0.879758
14820	dm3.chrX	15,697,830 – 15,697,992	- - - - - - - -	20403	15,697,830 – 15,697,941	+	3	111	85.53	-1.87	0.80	0.764906
				20404	15,697,830 – 15,697,941	-	3	111	85.53	-2.16	0.77	0.847827
				20405	15,697,868 – 15,697,980	+	3	112	83.80	-0.81	0.95	0.589914
				20406	15,697,880 – 15,697,992	+	3	112	89.63	-1.82	0.90	0.891518
				20407	15,697,880 – 15,697,992	-	3	112	89.63	-2.11	0.78	0.731845
14821	dm3.chrX	15,698,221 – 15,698,382	- - - - - - - -	20408	15,698,221 – 15,698,382	+	5	171	76.46	-2.47	0.49	0.923489
14821	dm3.chrX	15,698,221 – 15,698,382	- - - - - - - -	20409	15,698,221 – 15,698,382	-	5	171	76.46	-2.78	0.45	0.949075
14822	dm3.chrX	15,699,082 – 15,699,194	- - - - - - - -	20410	15,699,082 – 15,699,194	+	5	117	84.41	-2.33	0.69	0.903873
14823	dm3.chrX	15,705,581 – 15,705,699	- - - intron="intron;ID=intron_FBgn0003345:1_FBgn0003345:9;Name=sd-in;Parent=FBtr0112824;parent_type=mRNA" - - - -	20411	15,705,581 – 15,705,699	+	5	120	76.39	-1.56	0.56	0.641880
14824	dm3.chrX	15,706,512 – 15,706,602	- - - intron="intron;ID=intron_FBgn0003345:2_FBgn0003345:7;Name=sd-in;Parent=FBtr0112826,FBtr0301544;parent_type=mRNA" - - - -	20412	15,706,512 – 15,706,602	+	5	103	87.29	-2.29	0.65	0.671923
14825	dm3.chrX	15,708,203 – 15,708,351	- - CDS="CDS;ID=CDS_FBgn0003345:5_977;Name=sd-cds;Parent=FBtr0112825,FBtr0301543;parent_type=mRNA" - - - - -	20413	15,708,203 – 15,708,292	+	11	89	89.58	-1.42	0.84	0.638151
14825	dm3.chrX	15,708,203 – 15,708,351		20414	15,708,292 – 15,708,351	-	5	67	71.60	-1.09	0.54	0.519210
14826	dm3.chrX	15,708,440 – 15,708,551	- - - intron="intron;ID=intron_FBgn0003345:7_FBgn0003345:9;Name=sd-in;Parent=FBtr0112826,FBtr0301544;parent_type=mRNA" - - - -	20415	15,708,440 – 15,708,551	-	4	113	83.98	-2.27	0.65	0.794095
14827	dm3.chrX	15,712,443 – 15,712,570	- - - intron="intron;ID=intron_FBgn0003345:7_FBgn0003345:9;Name=sd-in;Parent=FBtr0112826,FBtr0301544;parent_type=mRNA" - - - -	20416	15,712,443 – 15,712,544	-	12	118	69.29	-1.60	0.40	0.794554
14827	dm3.chrX	15,712,443 – 15,712,570		20417	15,712,458 – 15,712,570	-	12	117	71.60	-1.10	0.46	0.602215
14828	dm3.chrX	15,712,785 – 15,712,882	- - - intron="intron;ID=intron_FBgn0003345:8_FBgn0003345:9;Name=sd-in;Parent=FBtr0074101;parent_type=mRNA" - - - -	20418	15,712,785 – 15,712,882	-	3	98	88.97	-2.78	0.64	0.801472
14829	dm3.chrX	15,713,113 – 15,713,284	- - - intron="intron;ID=intron_FBgn0003345:8_FBgn0003345:9;Name=sd-in;Parent=FBtr0074101;parent_type=mRNA" - - - -	20419	15,713,113 – 15,713,284	+	3	196	70.91	-1.59	0.54	0.530005
14830	dm3.chrX	15,716,174 – 15,716,294	- - - intron="intron;ID=intron_FBgn0003345:11_FBgn0003345:12;Name=sd-in;Parent=FBtr0074099,FBtr0074100,FBtr0074101,FBtr0112824,FBtr0112825,FBtr0112826,FBtr0112827,FBtr0301543,FBtr0301544;parent_type=mRNA" - - - -	20420	15,716,174 – 15,716,294	+	3	120	95.00	-1.30	0.96	0.743174
14831	dm3.chrX	15,716,494 – 15,716,654	- - - intron="intron;ID=intron_FBgn0003345:11_FBgn0003345:12;Name=sd-in;Parent=FBtr0074099,FBtr0074100,FBtr0074101,FBtr0112824,FBtr0112825,FBtr0112826,FBtr0112827,FBtr0301543,FBtr0301544;parent_type=mRNA" - - - -	20421	15,716,494 – 15,716,614	+	4	120	87.36	-2.85	0.64	0.925146
				20422	15,716,494 – 15,716,614	-	4	120	87.36	-3.71	0.70	0.996067
				20423	15,716,534 – 15,716,654	+	4	120	86.92	-2.09	0.71	0.707465
				20424	15,716,534 – 15,716,654	-	4	120	86.92	-4.34	0.77	0.999055
14832	dm3.chrX	15,735,083 – 15,735,134	- - - - - - - -	20425	15,735,083 – 15,735,134	-	3	58	66.67	-0.91	0.67	0.572144
14833	dm3.chrX	15,740,795 – 15,740,946	- - - intron="intron;ID=intron_CG8578:5_CG8578:6;Name=CG8578-in;Parent=FBtr0074104;parent_type=mRNA" - - - -	20426	15,740,795 – 15,740,946	+	5	159	88.58	-2.17	0.95	0.985202
14834	dm3.chrX	15,742,217 – 15,742,317	- - - intron="intron;ID=intron_FBgn0014391:2_FBgn0014391:1;Name=sun-in;Parent=FBtr0074177;parent_type=mRNA" - - - -	20427	15,742,217 – 15,742,317	+	5	100	93.90	-1.42	0.89	0.567712
14835	dm3.chrX	15,754,646 – 15,754,754	- - - intron="intron;ID=intron_CG10545:4_CG10545:10;Name=Gbeta13F-in;Parent=FBtr0074111;parent_type=mRNA" - - - -	20428	15,754,646 – 15,754,754	+	12	115	64.07	-1.34	0.35	0.857950
14836	dm3.chrX	15,755,004 – 15,755,107	- - - intron="intron;ID=intron_CG10545:4_CG10545:10;Name=Gbeta13F-in;Parent=FBtr0074111;parent_type=mRNA" - - - -	20429	15,755,004 – 15,755,107	-	6	107	75.96	-2.13	0.70	0.991703
14837	dm3.chrX	15,763,177 – 15,763,294	- - CDS="CDS;ID=CDS_FBgn0001092:3_970;Name=Gapdh2-cds;Parent=FBtr0074112;parent_type=mRNA" - - - - -	20430	15,763,177 – 15,763,294	+	15	117	77.62	-1.48	0.45	0.559177
14838	dm3.chrX	15,765,158 – 15,765,292	- - - intron="intron;ID=intron_FBgn0030701:4_FBgn0030701:5;Name=CG16952-in;Parent=FBtr0074116;parent_type=mRNA" - - - -	20431	15,765,158 – 15,765,253	+	5	100	88.87	-2.07	0.82	0.893402
				20432	15,765,186 – 15,765,292	+	6	113	79.66	-2.57	0.67	0.991112
				20433	15,765,186 – 15,765,292	-	6	113	79.66	-2.29	0.61	0.961077
14839	dm3.chrX	15,769,679 – 15,769,771	- - - - - - - -	20434	15,769,679 – 15,769,771	+	5	98	68.37	-1.18	0.57	0.831560
14840	dm3.chrX	15,781,405 – 15,781,483	- - - - - - - -	20435	15,781,405 – 15,781,483	-	5	78	82.69	-1.48	0.77	0.758609
14841	dm3.chrX	15,788,044 – 15,788,162	- - - intron="intron;ID=intron_FBgn0003392:8_FBgn0003392:9;Name=shi-in;Parent=FBtr0074119,FBtr0301596;parent_type=mRNA" - - - -	20436	15,788,044 – 15,788,162	+	5	118	95.93	-1.86	0.92	0.877554
14842	dm3.chrX	15,792,047 – 15,792,167	- - - intron="intron;ID=intron_FBgn0003392:15_FBgn0003392:16;Name=shi-in;Parent=FBtr0111036,FBtr0111037,FBtr0074118,FBtr0074119,FBtr0074121,FBtr0074122,FBtr0074123,FBtr0074124,FBtr0301594,FBtr0301595,FBtr0301596,FBtr0301597;parent_type=mRNA" - - - -	20437	15,792,047 – 15,792,167	-	5	120	87.52	-1.67	0.87	0.861586
14843	dm3.chrX	15,796,230 – 15,796,357	- - CDS="CDS;ID=CDS_FBgn0003392:22_936;Name=shi-cds;Parent=FBtr0074118;parent_type=mRNA" - - - - -	20438	15,796,230 – 15,796,323	+	13	111	73.94	-1.18	0.49	0.568173
				20439	15,796,246 – 15,796,357	+	12	118	75.70	-1.60	0.45	0.763739
				20440	15,796,246 – 15,796,357	-	12	118	75.70	-1.42	0.47	0.698612
14844	dm3.chrX	15,803,867 – 15,803,990	- - - - - - - -	20441	15,803,867 – 15,803,984	-	4	118	78.30	-2.93	0.59	0.989263
14844	dm3.chrX	15,803,867 – 15,803,990	- - - - - - - -	20442	15,803,873 – 15,803,990	-	4	118	77.30	-3.00	0.59	0.993142
14845	dm3.chrX	15,804,612 – 15,804,770	- - - - - - - -	20443	15,804,612 – 15,804,770	+	5	164	77.81	-2.66	0.52	0.967740
14846	dm3.chrX	15,804,875 – 15,805,108	- - - - - - - -	20444	15,804,875 – 15,804,993	-	6	120	86.33	-1.89	0.66	0.554538
14846	dm3.chrX	15,804,875 – 15,805,108	- - - - - - - -	20445	15,804,993 – 15,805,108	-	6	118	74.37	-1.90	0.47	0.879832
14847	dm3.chrX	15,813,416 – 15,813,553	- - - intron="intron;ID=intron_FBgn0030706:12_FBgn0030706:13;Name=CG8909-in;Parent=FBtr0074125,FBtr0301666;parent_type=mRNA" - - - -	20446	15,813,416 – 15,813,553	+	3	163	67.16	-1.74	0.48	0.626925
14848	dm3.chrX	15,815,293 – 15,815,413	- - - - - - - -	20447	15,815,293 – 15,815,413	+	4	120	78.21	-2.46	0.54	0.918228
14849	dm3.chrX	15,816,216 – 15,816,318	- - - intron="intron;ID=intron_FBgn0030707:1_FBgn0030707:3;Name=CG8916-in;Parent=FBtr0301232;parent_type=mRNA" - - - -	20448	15,816,216 – 15,816,316	-	5	100	82.88	-1.68	0.77	0.844873
14849	dm3.chrX	15,816,216 – 15,816,318		20449	15,816,218 – 15,816,318	-	5	100	82.88	-1.83	0.83	0.943772
14850	dm3.chrX	15,827,657 – 15,827,707	- - - - - - - -	20450	15,827,657 – 15,827,707	+	5	50	94.20	-1.48	0.94	0.811364
14851	dm3.chrX	15,859,990 – 15,860,084	FBnoncoding="pre_miRNA;ID=FBtr0304254;Name=mir-927-RM;Parent=FBgn0262210;Alias=CR42917-RM;Dbxref=FlyBase_Annotation_IDs:CR42917-RM,miRBase:MI0005843" - - intron="intron;ID=intron_FBgn0259110:26_FBgn0259110:25;Name=mmd-in;Parent=FBtr0299534,FBtr0299535,FBtr0299536;parent_type=mRNA" "Rfam_10.0=RF00950;mir-927;AABU01002771.1/5147408-5147485\|6.8e-36" - - "mirBase_v16=dme-mir-927\|3.4e-41"	20451	15,859,990 – 15,860,084	+	14	96	76.17	-4.82	0.81	0.999711
14851	dm3.chrX	15,859,990 – 15,860,084		20452	15,859,990 – 15,860,084	-	14	96	76.17	-4.08	0.88	0.999450
14852	dm3.chrX	15,876,370 – 15,876,449	- - - - - - - -	20453	15,876,370 – 15,876,449	+	11	86	65.69	-0.69	0.47	0.815601
14853	dm3.chrX	15,876,565 – 15,876,681	- - - - - - - -	20454	15,876,565 – 15,876,681	+	5	120	92.53	-2.41	0.81	0.914255
14853	dm3.chrX	15,876,565 – 15,876,681	- - - - - - - -	20455	15,876,565 – 15,876,681	-	5	120	92.53	-2.75	0.82	0.970035
14854	dm3.chrX	15,876,759 – 15,876,934	- - - - - - - -	20456	15,876,759 – 15,876,868	+	5	120	94.36	-2.14	0.86	0.872601
				20457	15,876,759 – 15,876,868	-	5	120	94.36	-2.19	0.86	0.888824
				20458	15,876,799 – 15,876,908	+	5	120	93.32	-2.67	0.80	0.938903
				20459	15,876,833 – 15,876,934	+	5	120	86.26	-1.93	0.89	0.953091
14855	dm3.chrX	15,951,536 – 15,951,666	- - CDS="CDS;ID=CDS_CG32580:11_935;Name=Muc14A-cds;Parent=FBtr0074205;parent_type=mRNA" - - - - -	20460	15,951,536 – 15,951,666	+	5	148	70.76	-1.92	0.48	0.883037
14856	dm3.chrX	15,952,098 – 15,952,212	- - CDS="CDS;ID=CDS_CG32580:12_935;Name=Muc14A-cds;Parent=FBtr0074205;parent_type=mRNA" - - - - -	20461	15,952,098 – 15,952,212	-	5	120	81.47	-2.16	0.70	0.940124
14857	dm3.chrX	15,952,471 – 15,952,588	- - CDS="CDS;ID=CDS_CG32580:12_935;Name=Muc14A-cds;Parent=FBtr0074205;parent_type=mRNA" - - - - -	20462	15,952,471 – 15,952,588	-	5	120	81.02	-1.69	0.68	0.736442
14858	dm3.chrX	15,953,717 – 15,953,805	- - CDS="CDS;ID=CDS_CG32580:12_935;Name=Muc14A-cds;Parent=FBtr0074205;parent_type=mRNA" - - - - -	20463	15,953,717 – 15,953,805	-	5	88	76.93	-1.98	0.52	0.800307
14859	dm3.chrX	15,957,547 – 15,957,690	- - - - - - - -	20464	15,957,547 – 15,957,690	+	7	144	68.85	-2.10	0.45	0.981067
14860	dm3.chrX	15,966,504 – 15,966,628	- - - intron="intron;ID=intron_CG9212:8_CG9212:3;Name=Nipsnap-in;Parent=FBtr0074258;parent_type=mRNA" - - - -	20465	15,966,504 – 15,966,609	+	5	106	84.54	-2.31	0.66	0.882283
				20466	15,966,504 – 15,966,609	-	5	106	84.54	-2.10	0.64	0.725263
				20467	15,966,529 – 15,966,628	+	5	104	79.01	-1.93	0.64	0.874157
				20468	15,966,529 – 15,966,628	-	5	104	79.01	-2.20	0.55	0.847590
14861	dm3.chrX	15,972,172 – 15,972,224	- - - - - - - -	20469	15,972,172 – 15,972,224	-	3	52	98.72	-1.59	0.93	0.695936
14862	dm3.chrX	15,980,104 – 15,980,215	- - - - - - - -	20470	15,980,104 – 15,980,215	+	4	112	88.20	-1.68	0.81	0.660846
14863	dm3.chrX	15,980,249 – 15,980,367	- - - - - - - -	20471	15,980,249 – 15,980,367	+	4	118	76.46	-1.43	0.72	0.809184
14864	dm3.chrX	15,980,494 – 15,980,567	- - - - - - - -	20472	15,980,494 – 15,980,567	+	6	73	70.41	-2.10	0.41	0.952344
14865	dm3.chrX	15,980,689 – 15,980,792	- - - - - - - -	20473	15,980,689 – 15,980,792	-	7	115	72.45	-1.15	0.56	0.545072
14866	dm3.chrX	15,984,811 – 15,984,901	- - - - - - - -	20474	15,984,811 – 15,984,901	+	4	90	88.05	-1.81	0.78	0.637867
14867	dm3.chrX	15,986,631 – 15,986,751	- - - - - - - -	20475	15,986,631 – 15,986,751	+	7	120	67.87	-1.66	0.36	0.510569
14868	dm3.chrX	15,988,205 – 15,988,296	- - CDS="CDS;ID=CDS_FBgn0259700:2_955;Name=CG42354-cds;Parent=FBtr0299951;parent_type=mRNA" - - - - -	20476	15,988,205 – 15,988,296	-	8	120	63.85	-1.45	0.36	0.596677
14869	dm3.chrX	15,988,373 – 15,988,474	- - CDS="CDS;ID=CDS_FBgn0259700:2_955;Name=CG42354-cds;Parent=FBtr0299951;parent_type=mRNA" - - - - -	20477	15,988,373 – 15,988,474	+	4	110	68.72	-1.98	0.42	0.764717
14870	dm3.chrX	15,990,365 – 15,990,420	- - - intron="intron;ID=intron_FBgn0259700:4_FBgn0259700:3;Name=CG42354-in;Parent=FBtr0299949;parent_type=mRNA" - - - -	20478	15,990,365 – 15,990,420	-	3	55	91.30	-3.14	0.99	0.997814
14871	dm3.chrX	15,995,333 – 15,995,392	- - - intron="intron;ID=intron_FBgn0259700:7_FBgn0259700:6;Name=CG42354-in;Parent=FBtr0299951;parent_type=mRNA" - - - -	20479	15,995,333 – 15,995,392	+	5	60	94.44	-2.63	0.93	0.987875
14871	dm3.chrX	15,995,333 – 15,995,392		20480	15,995,333 – 15,995,392	-	5	60	94.44	-1.06	0.94	0.517210
14872	dm3.chrX	15,999,928 – 16,000,081	- - - - - - - -	20481	15,999,928 – 16,000,046	+	3	119	93.84	-2.62	0.90	0.978405
				20482	15,999,928 – 16,000,046	-	3	119	93.84	-3.34	0.86	0.992715
				20483	15,999,967 – 16,000,081	+	3	114	85.84	-2.11	0.89	0.962319
				20484	15,999,967 – 16,000,081	-	3	114	85.84	-3.69	0.88	0.998373
14873	dm3.chrX	16,001,993 – 16,002,053	- - - - - - - -	20485	16,001,993 – 16,002,053	+	5	66	83.97	-1.66	0.70	0.516587
14874	dm3.chrX	16,009,510 – 16,009,615	- - - - - - - -	20486	16,009,510 – 16,009,615	-	5	119	80.17	-1.34	0.83	0.874748
14875	dm3.chrX	16,009,655 – 16,009,754	- - - - - - - -	20487	16,009,655 – 16,009,754	+	3	112	63.78	-1.65	0.47	0.649667
14876	dm3.chrX	16,022,375 – 16,022,436	- - - intron="intron;ID=intron_FBgn0042650:3_FBgn0042650:2;Name=disco-r-in;Parent=FBtr0074251;parent_type=mRNA" - - - -	20488	16,022,375 – 16,022,436	+	6	76	80.40	-1.78	0.64	0.697279
14877	dm3.chrX	16,028,404 – 16,028,500	- - - intron="intron;ID=intron_FBgn0042650:4_FBgn0042650:3;Name=disco-r-in;Parent=FBtr0074251;parent_type=mRNA" - - - -	20489	16,028,404 – 16,028,500	+	3	107	86.92	-2.36	0.71	0.799645
14877	dm3.chrX	16,028,404 – 16,028,500		20490	16,028,404 – 16,028,500	-	3	107	86.92	-1.91	0.82	0.818368
14878	dm3.chrX	16,030,761 – 16,030,855	- - - intron="intron;ID=intron_FBgn0042650:4_FBgn0042650:3;Name=disco-r-in;Parent=FBtr0074251;parent_type=mRNA" - - - -	20491	16,030,761 – 16,030,855	-	5	109	63.98	-2.13	0.29	0.680180
14879	dm3.chrX	16,031,262 – 16,031,359	- - - intron="intron;ID=intron_FBgn0042650:4_FBgn0042650:3;Name=disco-r-in;Parent=FBtr0074251;parent_type=mRNA" - - - -	20492	16,031,262 – 16,031,359	+	12	98	77.32	-0.98	0.56	0.500000
14880	dm3.chrX	16,035,936 – 16,036,088	- - - intron="intron;ID=intron_FBgn0042650:4_FBgn0042650:3;Name=disco-r-in;Parent=FBtr0074251;parent_type=mRNA" - - - -	20493	16,035,936 – 16,036,049	+	5	120	95.51	-2.43	1.01	0.993471
				20494	16,035,936 – 16,036,049	-	5	120	95.51	-2.48	1.00	0.993121
				20495	16,035,969 – 16,036,088	-	5	119	93.33	-1.53	0.96	0.899992
14881	dm3.chrX	16,036,673 – 16,036,766	- - - intron="intron;ID=intron_FBgn0042650:4_FBgn0042650:3;Name=disco-r-in;Parent=FBtr0074251;parent_type=mRNA" - - - -	20496	16,036,673 – 16,036,766	+	3	93	86.31	-2.02	0.88	0.939859
14882	dm3.chrX	16,036,999 – 16,037,075	- - - intron="intron;ID=intron_FBgn0042650:4_FBgn0042650:3;Name=disco-r-in;Parent=FBtr0074251;parent_type=mRNA" - - - -	20497	16,036,999 – 16,037,075	+	5	76	97.36	-3.10	0.99	0.996704
14883	dm3.chrX	16,037,388 – 16,037,441	- - - intron="intron;ID=intron_FBgn0042650:4_FBgn0042650:3;Name=disco-r-in;Parent=FBtr0074251;parent_type=mRNA" - - - -	20498	16,037,388 – 16,037,441	-	3	53	98.74	-1.36	0.97	0.742040
14884	dm3.chrX	16,038,394 – 16,038,515	- - - intron="intron;ID=intron_FBgn0042650:4_FBgn0042650:3;Name=disco-r-in;Parent=FBtr0074251;parent_type=mRNA" - - - -	20499	16,038,394 – 16,038,496	+	3	116	78.38	-2.50	0.54	0.777141
14884	dm3.chrX	16,038,394 – 16,038,515		20500	16,038,416 – 16,038,515	+	3	114	69.97	-1.54	0.58	0.566407
14885	dm3.chrX	16,061,815 – 16,061,994	- - - - - - - -	20501	16,061,815 – 16,061,928	+	4	115	79.34	-2.73	0.70	0.989410
				20502	16,061,815 – 16,061,928	-	4	115	79.34	-1.77	0.69	0.784425
				20503	16,061,895 – 16,061,994	+	4	103	83.84	-1.25	0.82	0.517923
14886	dm3.chrX	16,067,763 – 16,067,882	- - - - - - - -	20504	16,067,763 – 16,067,868	-	6	105	74.38	-1.31	0.74	0.935144
14886	dm3.chrX	16,067,763 – 16,067,882	- - - - - - - -	20505	16,067,771 – 16,067,882	-	5	111	94.79	-1.87	0.90	0.856855
14887	dm3.chrX	16,068,315 – 16,068,409	- - - - - - - -	20506	16,068,315 – 16,068,409	-	11	111	70.07	-1.51	0.56	0.947571
14888	dm3.chrX	16,068,501 – 16,068,566	- - - - - - - -	20507	16,068,501 – 16,068,566	+	6	65	78.77	-1.72	0.58	0.793608
14889	dm3.chrX	16,077,219 – 16,077,427	- - - - - - - -	20508	16,077,219 – 16,077,337	+	12	118	82.82	-1.62	0.69	0.871287
				20509	16,077,219 – 16,077,337	-	12	118	82.82	-1.06	0.76	0.659856
				20510	16,077,257 – 16,077,372	+	12	120	88.77	-2.07	0.64	0.598757
				20511	16,077,319 – 16,077,427	-	10	115	76.91	-1.62	0.58	0.834508
14890	dm3.chrX	16,084,114 – 16,084,189	- - - - - - - -	20512	16,084,114 – 16,084,189	+	7	76	68.25	-0.83	0.51	0.633116
14891	dm3.chrX	16,085,259 – 16,085,375	FBnoncoding="pre_miRNA;ID=FBtr0304408;Name=mir-985-RM;Parent=FBgn0262283;Alias=CR42990-RM;Dbxref=FlyBase_Annotation_IDs:CR42990-RM,miRBase:MI0005844" - - - - - - "mirBase_v16=dme-mir-985\|4.6e-44"	20513	16,085,259 – 16,085,375	+	5	116	80.68	-4.01	0.69	0.999310
14891	dm3.chrX	16,085,259 – 16,085,375		20514	16,085,259 – 16,085,375	-	5	116	80.68	-4.60	0.78	0.999593
14892	dm3.chrX	16,098,958 – 16,099,070	- - - - - - - -	20515	16,098,958 – 16,099,070	+	3	116	79.13	-2.50	0.51	0.716013
14892	dm3.chrX	16,098,958 – 16,099,070	- - - - - - - -	20516	16,098,958 – 16,099,070	-	3	116	79.13	-2.46	0.54	0.773564
14893	dm3.chrX	16,107,999 – 16,108,085	- - - intron="intron;ID=intron_CG9908:3_CG9908:4;Name=disco-in;Parent=FBtr0100384;parent_type=mRNA" - - - -	20517	16,107,999 – 16,108,085	+	5	87	95.60	-0.95	1.00	0.716647
14894	dm3.chrX	16,124,664 – 16,124,729	- - - - - - - -	20518	16,124,664 – 16,124,729	+	3	65	57.95	-0.97	0.77	0.973565
14894	dm3.chrX	16,124,664 – 16,124,729	- - - - - - - -	20519	16,124,664 – 16,124,729	-	3	65	57.95	-1.30	0.55	0.946643
14895	dm3.chrX	16,127,853 – 16,127,922	- - - - - - - -	20520	16,127,853 – 16,127,922	+	7	78	73.22	-1.33	0.48	0.579552
14896	dm3.chrX	16,138,087 – 16,138,180	- - - - - - - -	20521	16,138,087 – 16,138,180	+	6	109	75.52	-1.69	0.59	0.789510
14897	dm3.chrX	16,143,080 – 16,143,146	- - - - - - - -	20522	16,143,080 – 16,143,146	-	6	67	75.90	-1.61	0.57	0.865412
14898	dm3.chrX	16,148,700 – 16,148,915	FBnoncoding="snRNA;ID=FBtr0074208;Name=snRNA:U2:14B-RA;Parent=FBgn0003920;Dbxref=FlyBase_Annotation_IDs:CR32913-RA,REFSEQ:NR_002130;score_text=Weakly" - - - "Rfam_10.0=RF00004;U2;AANI01017247.1/37186-37381\|2.1e-87" "Noncode_2.0=n356_u336_AE003501_snRNA_Drosophila\|3e-105" "unique_Noncode_2.0=u336_snRNA_Drosophila\|2e-105" -	20523	16,148,700 – 16,148,820	+	13	120	96.88	-3.39	1.01	0.998384
				20524	16,148,700 – 16,148,820	-	13	120	96.88	-5.66	0.95	0.998418
				20525	16,148,740 – 16,148,860	+	13	120	95.56	-2.68	1.03	0.997103
				20526	16,148,740 – 16,148,860	-	13	120	95.56	-5.02	0.91	0.998956
				20527	16,148,799 – 16,148,915	+	12	117	90.94	-1.22	0.95	0.829499
14899	dm3.chrX	16,153,454 – 16,153,546	- - - - - - - -	20528	16,153,454 – 16,153,546	-	5	93	84.58	-1.75	0.83	0.865829
14900	dm3.chrX	16,153,955 – 16,154,066	- - - - - - - -	20529	16,153,955 – 16,154,066	-	3	118	86.08	-2.50	0.61	0.648924
14901	dm3.chrX	16,161,281 – 16,161,429	- - - - - - - -	20530	16,161,281 – 16,161,376	+	6	99	86.71	-1.99	0.65	0.582860
14901	dm3.chrX	16,161,281 – 16,161,429	- - - - - - - -	20531	16,161,332 – 16,161,429	-	6	97	90.24	-1.28	0.92	0.772594
14902	dm3.chrX	16,172,827 – 16,172,986	- - - intron="intron;ID=intron_CG3525:1_CG3525:2;Name=eas-in;Parent=FBtr0074215,FBtr0074211;parent_type=mRNA" - - - -	20532	16,172,827 – 16,172,946	+	5	120	91.83	-2.36	0.87	0.961239
14902	dm3.chrX	16,172,827 – 16,172,986		20533	16,172,867 – 16,172,986	+	5	120	88.83	-2.60	0.85	0.983602
14903	dm3.chrX	16,176,302 – 16,176,417	- - - intron="intron;ID=intron_CG3525:12_CG3525:3;Name=eas-in;Parent=FBtr0074215;parent_type=mRNA" - - - -	20534	16,176,302 – 16,176,417	-	5	121	70.05	-0.91	0.64	0.577125
14904	dm3.chrX	16,183,154 – 16,183,246	- - - intron="intron;ID=intron_FBgn0011571:2_FBgn0011571:3;Name=caz-in;Parent=FBtr0074217;parent_type=mRNA" - - - -	20535	16,183,154 – 16,183,246	-	12	97	57.46	-0.46	0.39	0.585921
14905	dm3.chrX	16,185,564 – 16,185,658	- - - intron="intron;ID=intron_FBgn0011571:4_FBgn0011571:5;Name=caz-in;Parent=FBtr0074217;parent_type=mRNA" - - - -	20536	16,185,564 – 16,185,658	-	5	112	82.86	-1.02	0.88	0.623743
14906	dm3.chrX	16,192,795 – 16,192,914	- - - - - - - -	20537	16,192,795 – 16,192,914	+	10	137	62.62	-1.24	0.32	0.586405
14907	dm3.chrX	16,200,248 – 16,200,394	- - - - - - - -	20538	16,200,248 – 16,200,363	-	6	116	71.87	-1.29	0.65	0.926884
14907	dm3.chrX	16,200,248 – 16,200,394	- - - - - - - -	20539	16,200,288 – 16,200,394	-	6	108	86.31	-2.52	0.70	0.951019
14908	dm3.chrX	16,214,380 – 16,214,473	- - - - - - - -	20540	16,214,380 – 16,214,473	+	5	96	93.10	-1.68	0.97	0.939909
14908	dm3.chrX	16,214,380 – 16,214,473	- - - - - - - -	20541	16,214,380 – 16,214,473	-	5	96	93.10	-1.78	0.92	0.897134
14909	dm3.chrX	16,216,836 – 16,216,916	- - CDS="CDS;ID=CDS_CG9917:1_914;Name=CG9917-cds;Parent=FBtr0074237;parent_type=mRNA" - - - - -	20542	16,216,836 – 16,216,916	+	10	86	67.22	-1.88	0.29	0.782178
14910	dm3.chrX	16,227,763 – 16,227,860	- - - intron="intron;ID=intron_FBgn0011764:2_FBgn0011764:6;Name=Dsp1-in;Parent=FBtr0089260;parent_type=mRNA" - - - -	20543	16,227,763 – 16,227,860	-	5	97	97.11	-1.48	0.92	0.639404
14911	dm3.chrX	16,229,432 – 16,229,537	- - - intron="intron;ID=intron_FBgn0011764:6_FBgn0011764:8;Name=Dsp1-in;Parent=FBtr0089263;parent_type=mRNA" - - - -	20544	16,229,432 – 16,229,537	+	8	118	70.65	-1.09	0.51	0.658225
14912	dm3.chrX	16,243,361 – 16,243,425	- - - - - - - -	20545	16,243,361 – 16,243,425	+	3	64	57.29	-0.92	0.77	0.972692
14912	dm3.chrX	16,243,361 – 16,243,425	- - - - - - - -	20546	16,243,361 – 16,243,425	-	3	64	57.29	-1.31	0.55	0.956033
14913	dm3.chrX	16,267,442 – 16,267,533	- - - intron="intron;ID=intron_FBgn0004598:5_FBgn0004598:6;Name=Fur2-in;Parent=FBtr0074265,FBtr0074266;parent_type=mRNA" - - - -	20547	16,267,442 – 16,267,533	-	5	99	86.93	-2.18	0.78	0.914064
14914	dm3.chrX	16,267,726 – 16,267,897	- - - intron="intron;ID=intron_FBgn0004598:5_FBgn0004598:6;Name=Fur2-in;Parent=FBtr0074265,FBtr0074266;parent_type=mRNA" - - - -	20548	16,267,726 – 16,267,829	-	7	114	61.42	-1.33	0.36	0.793698
14914	dm3.chrX	16,267,726 – 16,267,897		20549	16,267,795 – 16,267,897	-	6	115	67.93	-1.92	0.44	0.960084
14915	dm3.chrX	16,278,598 – 16,278,753	- - - - - - - -	20550	16,278,598 – 16,278,718	+	5	120	91.33	-2.37	0.75	0.842184
14915	dm3.chrX	16,278,598 – 16,278,753	- - - - - - - -	20551	16,278,638 – 16,278,753	+	5	120	88.46	-1.85	0.77	0.689568
14916	dm3.chrX	16,279,299 – 16,279,418	- - - - - - - -	20552	16,279,299 – 16,279,418	-	4	120	91.35	-2.13	0.82	0.850094
14917	dm3.chrX	16,281,044 – 16,281,161	- - CDS="CDS;ID=CDS_CG4239:2_914;Name=CG4239-cds;Parent=FBtr0074268,FBtr0074269,FBtr0074270;parent_type=mRNA" - - - - -	20553	16,281,044 – 16,281,161	+	15	117	85.86	-2.29	0.62	0.898040
14918	dm3.chrX	16,312,220 – 16,312,357	- - CDS="CDS;ID=CDS_CG9968:5_917;Name=Anxb11-cds;Parent=FBtr0074302,FBtr0074303;parent_type=mRNA" - - - - -	20554	16,312,220 – 16,312,328	-	14	108	77.47	-1.07	0.53	0.535961
14918	dm3.chrX	16,312,220 – 16,312,357		20555	16,312,248 – 16,312,357	-	12	112	70.80	-0.65	0.58	0.829365
14919	dm3.chrX	16,316,642 – 16,316,748	- - - - - - - -	20556	16,316,642 – 16,316,748	-	5	108	82.54	-1.70	0.69	0.689751
14920	dm3.chrX	16,322,563 – 16,322,624	- - - intron="intron;ID=intron_FBgn0026575:1_FBgn0026575:3;Name=hang-in;Parent=FBtr0290069;parent_type=mRNA" - - - -	20557	16,322,563 – 16,322,624	-	8	71	70.27	-1.57	0.47	0.865767
14921	dm3.chrX	16,324,455 – 16,324,584	- - - intron="intron;ID=intron_FBgn0026575:3_FBgn0026575:4;Name=hang-in;Parent=FBtr0290069;parent_type=mRNA" - - - -	20558	16,324,455 – 16,324,548	+	5	93	95.81	-1.82	0.94	0.906811
14921	dm3.chrX	16,324,455 – 16,324,584		20559	16,324,472 – 16,324,584	+	5	112	94.18	-1.54	0.86	0.500000
14922	dm3.chrX	16,329,597 – 16,329,705	- - CDS="CDS;ID=CDS_FBgn0026575:9_933;Name=hang-cds;Parent=FBtr0074276;parent_type=mRNA" - - - - -	20560	16,329,597 – 16,329,705	+	11	116	76.94	-1.62	0.48	0.680545
14923	dm3.chrX	16,350,557 – 16,350,711	- - - - - - - -	20561	16,350,557 – 16,350,711	-	8	163	70.46	-1.28	0.44	0.668073
14924	dm3.chrX	16,362,551 – 16,362,644	- - - intron="intron;ID=intron_FBgn0260993:3_FBgn0260993:2;Name=para-in;Parent=FBtr0074298,FBtr0111022,FBtr0111023,FBtr0290121,FBtr0303655,FBtr0303656,FBtr0303657,FBtr0303658,FBtr0303659,FBtr0303660,FBtr0303661,FBtr0303662,FBtr0303663,FBtr0303664,FBtr0303665,FBtr0303666,FBtr0303667,FBtr0303668,FBtr0303669,FBtr0303670,FBtr0303671,FBtr0303672,FBtr0303673,FBtr0303674,FBtr0303675,FBtr0303676,FBtr0303677,FBtr0303678,FBtr0303679,FBtr0303680,FBtr0303681,FBtr0303682,FBtr0303683,FBtr0303684,FBtr0303685,FBtr0303686,FBtr0303687,FBtr0303688,FBtr0303689,FBtr0303690,FBtr0303691,FBtr0303692,FBtr0303693,FBtr0303694,FBtr0303695,FBtr0303696,FBtr0303697,FBtr0303698,FBtr0303699,FBtr0303700,FBtr0303701,FBtr0303702,FBtr0303703,FBtr0303704,FBtr0303705,FBtr0303706,FBtr0303707;parent_type=mRNA" - - - -	20562	16,362,551 – 16,362,644	-	11	108	62.30	-2.25	0.36	0.993016
14925	dm3.chrX	16,375,989 – 16,376,089	- - - intron="intron;ID=intron_FBgn0260993:11_FBgn0260993:9;Name=para-in;Parent=FBtr0290121,FBtr0303674,FBtr0303675,FBtr0303686,FBtr0303688,FBtr0303690,FBtr0303694,FBtr0303701,FBtr0303702,FBtr0303703,FBtr0303707;parent_type=mRNA" - - - -	20563	16,375,989 – 16,376,089	+	11	103	61.55	-1.43	0.38	0.972205
14925	dm3.chrX	16,375,989 – 16,376,089		20564	16,375,989 – 16,376,089	-	11	103	61.55	-2.65	0.50	0.999920
14926	dm3.chrX	16,376,737 – 16,376,851	- - CDS="CDS;ID=CDS_FBgn0260993:10_960;Name=para-cds;Parent=FBtr0303696;parent_type=mRNA" - - - - -	20565	16,376,737 – 16,376,851	-	14	117	85.60	-1.21	0.73	0.500000
14927	dm3.chrX	16,393,039 – 16,393,134	- - - intron="intron;ID=intron_FBgn0260993:26_FBgn0260993:25;Name=para-in;Parent=FBtr0074298,FBtr0111022,FBtr0111023,FBtr0290121,FBtr0303655,FBtr0303656,FBtr0303658,FBtr0303660,FBtr0303661,FBtr0303663,FBtr0303666,FBtr0303667,FBtr0303670,FBtr0303671,FBtr0303674,FBtr0303675,FBtr0303676,FBtr0303677,FBtr0303678,FBtr0303679,FBtr0303681,FBtr0303682,FBtr0303684,FBtr0303686,FBtr0303687,FBtr0303689,FBtr0303690,FBtr0303691,FBtr0303695,FBtr0303700,FBtr0303701,FBtr0303703,FBtr0303704,FBtr0303706,FBtr0303707;parent_type=mRNA" - - - -	20566	16,393,039 – 16,393,134	+	4	103	91.83	-1.73	0.88	0.788131
14928	dm3.chrX	16,393,876 – 16,393,966	- - - intron="intron;ID=intron_FBgn0260993:26_FBgn0260993:25;Name=para-in;Parent=FBtr0074298,FBtr0111022,FBtr0111023,FBtr0290121,FBtr0303655,FBtr0303656,FBtr0303658,FBtr0303660,FBtr0303661,FBtr0303663,FBtr0303666,FBtr0303667,FBtr0303670,FBtr0303671,FBtr0303674,FBtr0303675,FBtr0303676,FBtr0303677,FBtr0303678,FBtr0303679,FBtr0303681,FBtr0303682,FBtr0303684,FBtr0303686,FBtr0303687,FBtr0303689,FBtr0303690,FBtr0303691,FBtr0303695,FBtr0303700,FBtr0303701,FBtr0303703,FBtr0303704,FBtr0303706,FBtr0303707;parent_type=mRNA" - - - -	20567	16,393,876 – 16,393,966	+	5	93	96.89	-1.67	1.06	0.984231
14929	dm3.chrX	16,398,221 – 16,398,333	- - CDS="CDS;ID=CDS_FBgn0260993:28_955;Name=para-cds;Parent=FBtr0303661,FBtr0303667,FBtr0303676,FBtr0303677,FBtr0303678,FBtr0303679,FBtr0303689;parent_type=mRNA" - - - - -	20568	16,398,221 – 16,398,333	+	9	112	87.95	-1.86	0.68	0.553574
14929	dm3.chrX	16,398,221 – 16,398,333		20569	16,398,221 – 16,398,333	-	9	112	87.95	-2.12	0.82	0.950940
14930	dm3.chrX	16,399,226 – 16,399,351	- - - intron="intron;ID=intron_FBgn0260993:29_FBgn0260993:28;Name=para-in;Parent=FBtr0303661,FBtr0303667,FBtr0303676,FBtr0303677,FBtr0303678,FBtr0303679,FBtr0303689,FBtr0303699,FBtr0303705;parent_type=mRNA" - - - -	20570	16,399,226 – 16,399,351	-	8	129	83.60	-3.30	0.73	0.997402
14931	dm3.chrX	16,399,534 – 16,399,633	- - CDS="CDS;ID=CDS_FBgn0260993:29_1001;Name=para-cds;Parent=FBtr0303698;parent_type=mRNA" - - - - -	20571	16,399,534 – 16,399,633	+	15	120	88.11	-2.03	0.78	0.905629
14932	dm3.chrX	16,406,837 – 16,406,946	- - - intron="intron;ID=intron_FBgn0260993:33_FBgn0260993:32;Name=para-in;Parent=FBtr0074298,FBtr0111022,FBtr0111023,FBtr0290121,FBtr0303655,FBtr0303656,FBtr0303657,FBtr0303658,FBtr0303659,FBtr0303660,FBtr0303661,FBtr0303662,FBtr0303663,FBtr0303664,FBtr0303665,FBtr0303666,FBtr0303667,FBtr0303668,FBtr0303669,FBtr0303670,FBtr0303671,FBtr0303672,FBtr0303673,FBtr0303674,FBtr0303675,FBtr0303676,FBtr0303677,FBtr0303678,FBtr0303679,FBtr0303680,FBtr0303681,FBtr0303682,FBtr0303683,FBtr0303684,FBtr0303685,FBtr0303686,FBtr0303687,FBtr0303688,FBtr0303689,FBtr0303690,FBtr0303691,FBtr0303692,FBtr0303693,FBtr0303699,FBtr0303700,FBtr0303701,FBtr0303702,FBtr0303703,FBtr0303704,FBtr0303705,FBtr0303706,FBtr0303707;parent_type=mRNA" - - - -	20572	16,406,837 – 16,406,946	-	5	114	88.74	-1.17	0.88	0.543604
14933	dm3.chrX	16,410,715 – 16,410,828	- - - intron="intron;ID=intron_FBgn0260993:35_FBgn0260993:34;Name=para-in;Parent=FBtr0074298,FBtr0111022,FBtr0111023,FBtr0303655,FBtr0303656,FBtr0303657,FBtr0303659,FBtr0303660,FBtr0303661,FBtr0303662,FBtr0303663,FBtr0303664,FBtr0303665,FBtr0303666,FBtr0303667,FBtr0303668,FBtr0303669,FBtr0303670,FBtr0303671,FBtr0303672,FBtr0303673,FBtr0303674,FBtr0303675,FBtr0303676,FBtr0303677,FBtr0303678,FBtr0303679,FBtr0303681,FBtr0303690,FBtr0303691,FBtr0303692,FBtr0303693;parent_type=mRNA" - - - -	20573	16,410,715 – 16,410,828	+	5	115	82.46	-2.67	0.67	0.978316
14933	dm3.chrX	16,410,715 – 16,410,828		20574	16,410,715 – 16,410,828	-	5	115	82.46	-2.91	0.73	0.993510
14934	dm3.chrX	16,411,624 – 16,411,763	- - - intron="intron;ID=intron_FBgn0260993:35_FBgn0260993:34;Name=para-in;Parent=FBtr0074298,FBtr0111022,FBtr0111023,FBtr0303655,FBtr0303656,FBtr0303657,FBtr0303659,FBtr0303660,FBtr0303661,FBtr0303662,FBtr0303663,FBtr0303664,FBtr0303665,FBtr0303666,FBtr0303667,FBtr0303668,FBtr0303669,FBtr0303670,FBtr0303671,FBtr0303672,FBtr0303673,FBtr0303674,FBtr0303675,FBtr0303676,FBtr0303677,FBtr0303678,FBtr0303679,FBtr0303681,FBtr0303690,FBtr0303691,FBtr0303692,FBtr0303693;parent_type=mRNA" - - - -	20575	16,411,624 – 16,411,763	+	6	150	69.50	-1.17	0.48	0.530463
14935	dm3.chrX	16,443,030 – 16,443,130	- - - - - - - -	20576	16,443,030 – 16,443,130	-	6	103	57.62	-0.35	0.47	0.620047
14936	dm3.chrX	16,451,995 – 16,452,066	- - CDS="CDS;ID=CDS_FBgn0011826:2_1031;Name=Pp2B-14D-cds;Parent=FBtr0074294;parent_type=mRNA" - - - - -	20577	16,451,995 – 16,452,066	-	15	71	84.99	-2.04	0.60	0.870337
14937	dm3.chrX	16,458,925 – 16,459,021	- - - - - - - -	20578	16,458,925 – 16,459,021	-	4	110	75.65	-2.58	0.44	0.823254
14938	dm3.chrX	16,469,938 – 16,470,033	- - - intron="intron;ID=intron_FBgn0030758:3_FBgn0030758:1;Name=CanA-14F-in;Parent=FBtr0305198;parent_type=mRNA" - - - -	20579	16,469,938 – 16,470,033	-	3	109	63.30	-1.66	0.42	0.616240
14939	dm3.chrX	16,477,562 – 16,477,695	- - - intron="intron;ID=intron_FBgn0030758:3_FBgn0030758:1;Name=CanA-14F-in;Parent=FBtr0305198;parent_type=mRNA" - - - -	20580	16,477,562 – 16,477,655	+	4	120	75.15	-2.18	0.61	0.929710
14939	dm3.chrX	16,477,562 – 16,477,695		20581	16,477,601 – 16,477,695	+	3	101	87.79	-1.61	0.90	0.850349
14940	dm3.chrX	16,478,391 – 16,478,486	- - - intron="intron;ID=intron_FBgn0030758:3_FBgn0030758:1;Name=CanA-14F-in;Parent=FBtr0305198;parent_type=mRNA" - - - -	20582	16,478,391 – 16,478,486	+	6	110	79.86	-2.12	0.58	0.853857
14940	dm3.chrX	16,478,391 – 16,478,486		20583	16,478,391 – 16,478,486	-	6	110	79.86	-1.98	0.56	0.719468
14941	dm3.chrX	16,479,090 – 16,479,210	- - - intron="intron;ID=intron_FBgn0030758:3_FBgn0030758:1;Name=CanA-14F-in;Parent=FBtr0305198;parent_type=mRNA" - - - -	20584	16,479,090 – 16,479,210	+	5	120	95.32	-1.50	0.93	0.757295
14942	dm3.chrX	16,479,626 – 16,479,728	- - - intron="intron;ID=intron_FBgn0030758:3_FBgn0030758:1;Name=CanA-14F-in;Parent=FBtr0305198;parent_type=mRNA" - - - -	20585	16,479,626 – 16,479,728	+	4	106	83.02	-2.37	0.78	0.973499
14942	dm3.chrX	16,479,626 – 16,479,728		20586	16,479,626 – 16,479,728	-	4	106	83.02	-2.59	0.65	0.945583
14943	dm3.chrX	16,481,973 – 16,482,138	- - - - - - - -	20587	16,481,973 – 16,482,138	+	5	166	82.86	-2.26	0.72	0.952391
14943	dm3.chrX	16,481,973 – 16,482,138	- - - - - - - -	20588	16,481,973 – 16,482,138	-	5	166	82.86	-1.88	0.69	0.796010
14944	dm3.chrX	16,486,968 – 16,487,029	- - CDS="CDS;ID=CDS_CG9802:3_914;Name=Cap-cds;Parent=FBtr0074290;parent_type=mRNA" - - - - -	20589	16,486,968 – 16,487,029	-	13	61	82.80	-1.39	0.64	0.598260
14945	dm3.chrX	16,487,776 – 16,487,836	- - - - - - - -	20590	16,487,776 – 16,487,836	+	6	60	82.27	-1.32	0.87	0.893938
14946	dm3.chrX	16,489,612 – 16,489,895	- - - - - - - -	20591	16,489,612 – 16,489,723	+	6	123	70.19	-2.52	0.43	0.985446
				20592	16,489,648 – 16,489,756	+	5	115	79.55	-2.59	0.63	0.981588
				20593	16,489,648 – 16,489,756	-	5	115	79.55	-2.11	0.61	0.893393
				20594	16,489,688 – 16,489,796	+	4	115	81.38	-2.30	0.74	0.957445
				20595	16,489,756 – 16,489,876	+	5	121	75.05	-2.29	0.45	0.755451
				20596	16,489,775 – 16,489,895	+	5	120	81.17	-2.30	0.65	0.922742
14947	dm3.chrX	16,507,260 – 16,507,374	- - - intron="intron;ID=intron_FBgn0025743:2_FBgn0025743:3;Name=mbt-in;Parent=FBtr0074285;parent_type=mRNA" - - - -	20597	16,507,260 – 16,507,374	+	6	117	71.62	-2.16	0.34	0.749021
14948	dm3.chrX	16,515,056 – 16,515,107	- - - intron="intron;ID=intron_FBgn0030763:3_FBgn0030763:2;Name=CG9782-in;Parent=FBtr0074288;parent_type=mRNA" - - - -	20598	16,515,056 – 16,515,107	+	3	52	94.87	-1.47	0.95	0.800716
14948	dm3.chrX	16,515,056 – 16,515,107		20599	16,515,056 – 16,515,107	-	3	52	94.87	-0.90	1.00	0.676752
14949	dm3.chrX	16,530,618 – 16,530,723	- - - - - - - -	20600	16,530,618 – 16,530,723	-	6	110	72.56	-1.38	0.63	0.924592
14950	dm3.chrX	16,534,855 – 16,534,962	- - - - - - - -	20601	16,534,855 – 16,534,962	-	5	120	80.95	-2.10	0.76	0.954342
14951	dm3.chrX	16,549,565 – 16,549,666	- - - - - - - -	20602	16,549,565 – 16,549,666	-	5	108	89.02	-1.98	0.93	0.967988
14952	dm3.chrX	16,564,369 – 16,564,459	- - - intron="intron;ID=intron_FBgn0030769:4_FBgn0030769:3;Name=CG13012-in;Parent=FBtr0290216;parent_type=mRNA" - - - -	20603	16,564,369 – 16,564,459	+	3	90	88.15	-1.92	0.98	0.979422
14953	dm3.chrX	16,567,261 – 16,567,372	- - - - - - - -	20604	16,567,261 – 16,567,372	-	5	120	71.18	-2.41	0.50	0.984952
14954	dm3.chrX	16,568,358 – 16,568,472	- - - - - - - -	20605	16,568,358 – 16,568,472	+	6	116	76.02	-1.27	0.57	0.536136
14955	dm3.chrX	16,568,501 – 16,568,605	- - - - - - - -	20606	16,568,501 – 16,568,595	+	5	97	68.87	-3.01	0.57	0.999548
				20607	16,568,501 – 16,568,595	-	5	97	68.87	-1.65	0.66	0.989996
				20608	16,568,501 – 16,568,605	+	6	115	71.73	-2.46	0.46	0.984273
14956	dm3.chrX	16,588,065 – 16,588,115	- - CDS="CDS;ID=CDS_CG9699:12_938;Name=Sep4-cds;Parent=FBtr0074370;parent_type=mRNA" - - - - -	20609	16,588,065 – 16,588,115	-	9	56	72.23	-1.12	0.54	0.724908
14957	dm3.chrX	16,617,041 – 16,617,283	- - - intron="intron;ID=intron_CG32572:2_CG32572:3;Name=CG32572-in;Parent=FBtr0074324;parent_type=mRNA" - - - -	20610	16,617,041 – 16,617,142	-	5	114	85.80	-2.04	0.73	0.825947
				20611	16,617,064 – 16,617,182	-	5	118	97.46	-1.63	0.92	0.726871
				20612	16,617,142 – 16,617,257	+	5	120	91.11	-3.55	0.94	0.998319
				20613	16,617,182 – 16,617,283	+	5	120	74.61	-1.00	0.69	0.586287
14958	dm3.chrX	16,643,579 – 16,643,673	- - - intron="intron;ID=intron_CG9634:1_CG9634:2;Name=CG9634-in;Parent=FBtr0074359;parent_type=mRNA" - - - -	20614	16,643,579 – 16,643,673	+	5	94	79.16	-1.75	0.79	0.940727
14959	dm3.chrX	16,660,946 – 16,661,042	- - - intron="intron;ID=intron_FBgn0001250:9_FBgn0001250:8;Name=if-in;Parent=FBtr0074357,FBtr0301352,FBtr0301353,FBtr0301354;parent_type=mRNA" - - - -	20615	16,660,946 – 16,661,042	+	5	109	60.21	-1.75	0.31	0.559432
14960	dm3.chrX	16,662,725 – 16,662,787	- - - intron="intron;ID=intron_FBgn0001250:9_FBgn0001250:8;Name=if-in;Parent=FBtr0074357,FBtr0301352,FBtr0301353,FBtr0301354;parent_type=mRNA" - - - -	20616	16,662,725 – 16,662,787	+	9	70	79.27	-1.66	0.70	0.903799
14961	dm3.chrX	16,671,992 – 16,672,119	- - - intron="intron;ID=intron_FBgn0001250:11_FBgn0001250:10;Name=if-in;Parent=FBtr0074357,FBtr0301352,FBtr0301353,FBtr0301354;parent_type=mRNA" - - - -	20617	16,671,992 – 16,672,083	+	9	117	69.85	-1.68	0.44	0.825117
				20618	16,671,992 – 16,672,083	-	9	117	69.85	-2.00	0.51	0.980427
				20619	16,672,023 – 16,672,119	+	8	107	75.17	-1.76	0.48	0.697350
14962	dm3.chrX	16,673,644 – 16,673,734	- - - intron="intron;ID=intron_FBgn0001250:11_FBgn0001250:10;Name=if-in;Parent=FBtr0074357,FBtr0301352,FBtr0301353,FBtr0301354;parent_type=mRNA" - - - -	20620	16,673,644 – 16,673,734	-	5	99	79.85	-1.85	0.59	0.666853
14963	dm3.chrX	16,674,409 – 16,674,467	- - - intron="intron;ID=intron_FBgn0001250:12_FBgn0001250:11;Name=if-in;Parent=FBtr0301354;parent_type=mRNA" - - - -	20621	16,674,409 – 16,674,467	+	6	69	73.62	-2.27	0.59	0.986787
14964	dm3.chrX	16,675,146 – 16,675,236	- - - - - - - -	20622	16,675,146 – 16,675,236	-	5	98	87.81	-2.59	0.74	0.944049
14965	dm3.chrX	16,692,834 – 16,692,945	- - CDS="CDS;ID=CDS_FBgn0030791:3_1032;Name=CG9132-cds;Parent=FBtr0074354;parent_type=mRNA" - - - - -	20623	16,692,834 – 16,692,945	+	12	114	68.10	-1.49	0.31	0.611800
14966	dm3.chrX	16,694,043 – 16,694,124	- - - intron="intron;ID=intron_FBgn0030791:6_FBgn0030791:4;Name=CG9132-in;Parent=FBtr0074354;parent_type=mRNA" - - - -	20624	16,694,043 – 16,694,124	-	5	81	94.20	-1.62	0.90	0.748884
14967	dm3.chrX	16,713,929 – 16,714,028	- - - intron="intron;ID=intron_FBgn0030796:4_FBgn0030796:5;Name=CG4829-in;Parent=FBtr0112994;parent_type=mRNA" - - - -	20625	16,713,929 – 16,714,027	+	5	98	97.14	-1.47	0.98	0.870197
14967	dm3.chrX	16,713,929 – 16,714,028		20626	16,713,930 – 16,714,028	+	5	98	97.14	-1.36	0.98	0.827982
14968	dm3.chrX	16,714,313 – 16,714,408	- - - intron="intron;ID=intron_FBgn0030796:4_FBgn0030796:5;Name=CG4829-in;Parent=FBtr0112994;parent_type=mRNA" - - - -	20627	16,714,313 – 16,714,408	+	6	99	72.32	-1.39	0.45	0.513189
14968	dm3.chrX	16,714,313 – 16,714,408		20628	16,714,313 – 16,714,408	-	6	99	72.32	-2.83	0.29	0.901157
14969	dm3.chrX	16,720,319 – 16,720,410	- - - - - - - -	20629	16,720,319 – 16,720,410	-	4	91	95.97	-2.57	0.96	0.988538
14970	dm3.chrX	16,722,833 – 16,722,924	- - - - - - - -	20630	16,722,833 – 16,722,924	-	7	92	73.29	-2.01	0.39	0.846578
14971	dm3.chrX	16,724,773 – 16,724,864	- - - - - - - -	20631	16,724,773 – 16,724,864	-	5	109	83.20	-1.60	0.82	0.823787
14972	dm3.chrX	16,725,138 – 16,725,245	- - - - - - - -	20632	16,725,138 – 16,725,245	+	5	116	91.81	-2.01	0.79	0.682775
14973	dm3.chrX	16,725,861 – 16,725,978	- - - - - - - -	20633	16,725,861 – 16,725,978	+	7	128	65.30	-1.01	0.42	0.619803
14974	dm3.chrX	16,736,340 – 16,736,447	- - CDS="CDS;ID=CDS_FBgn0024941:5_933;Name=RSG7-cds;Parent=FBtr0074350;parent_type=mRNA" - - - - -	20634	16,736,340 – 16,736,447	+	14	120	70.72	-1.59	0.50	0.949657
14974	dm3.chrX	16,736,340 – 16,736,447		20635	16,736,340 – 16,736,447	-	14	120	70.72	-1.80	0.55	0.988305
14975	dm3.chrX	16,741,900 – 16,742,003	- - CDS="CDS;ID=CDS_FBgn0030798:3_963;Name=CG13003-cds;Parent=FBtr0074349;parent_type=mRNA" - - - - -	20636	16,741,900 – 16,742,003	-	6	107	66.50	-1.42	0.38	0.719420
14976	dm3.chrX	16,742,695 – 16,742,809	- - CDS="CDS;ID=CDS_FBgn0030798:3_963;Name=CG13003-cds;Parent=FBtr0074349;parent_type=mRNA" - - - - -	20637	16,742,695 – 16,742,809	+	7	117	73.81	-1.53	0.42	0.528943
14977	dm3.chrX	16,745,746 – 16,745,865	- - - intron="intron;ID=intron_FBgn0030798:5_FBgn0030798:3;Name=CG13003-in;Parent=FBtr0074349;parent_type=mRNA" - - - -	20638	16,745,746 – 16,745,855	+	5	120	90.52	-1.76	0.80	0.594659
				20639	16,745,746 – 16,745,865	+	5	120	94.33	-1.99	0.80	0.598107
				20640	16,745,746 – 16,745,865	-	5	120	94.33	-1.71	0.84	0.545377
14978	dm3.chrX	16,769,276 – 16,769,363	- - - - - - - -	20641	16,769,276 – 16,769,363	-	5	97	90.22	-0.88	0.96	0.602204
14979	dm3.chrX	16,770,545 – 16,770,599	- - - - - - - -	20642	16,770,545 – 16,770,599	-	11	66	67.37	-1.12	0.54	0.927383
14980	dm3.chrX	16,778,623 – 16,778,716	- - CDS="CDS;ID=CDS_CG4875:4_980;Name=Rcp-cds;Parent=FBtr0074341;parent_type=mRNA" intron="intron;ID=intron_CG4875:4_CG4875:5;Name=Rcp-in;Parent=FBtr0074341;parent_type=mRNA" - - - -	20643	16,778,623 – 16,778,716	-	6	94	64.23	-1.16	0.36	0.500000
14981	dm3.chrX	16,787,291 – 16,787,411	- - - - - - - -	20644	16,787,291 – 16,787,411	+	3	120	81.11	-2.11	0.66	0.753013
14982	dm3.chrX	16,788,647 – 16,788,719	- - - - - - - -	20645	16,788,647 – 16,788,719	-	7	89	57.59	-1.15	0.41	0.881551
14983	dm3.chrX	16,800,933 – 16,801,037	- - - - - - - -	20646	16,800,933 – 16,801,037	-	6	113	79.75	-1.84	0.54	0.572808
14984	dm3.chrX	16,811,627 – 16,811,714	- - - intron="intron;ID=intron_CG4928:1_CG4928:2;Name=CG4928-in;Parent=FBtr0074344;parent_type=mRNA" - - - -	20647	16,811,627 – 16,811,714	+	12	99	70.66	-1.17	0.47	0.647008
14985	dm3.chrX	16,813,265 – 16,813,357	- - - intron="intron;ID=intron_CG4928:1_CG4928:2;Name=CG4928-in;Parent=FBtr0074344;parent_type=mRNA" - - - -	20648	16,813,265 – 16,813,357	-	4	93	76.45	-1.45	0.71	0.747209
14986	dm3.chrX	16,815,272 – 16,815,405	- - - intron="intron;ID=intron_CG4928:1_CG4928:2;Name=CG4928-in;Parent=FBtr0074344;parent_type=mRNA" - - - -	20649	16,815,272 – 16,815,383	+	7	111	77.39	-1.37	0.72	0.875072
14986	dm3.chrX	16,815,272 – 16,815,405		20650	16,815,304 – 16,815,405	+	12	110	70.15	-2.19	0.62	0.999236
14987	dm3.chrX	16,828,538 – 16,828,676	- - - intron="intron;ID=intron_CG4928:4_CG4928:5;Name=CG4928-in;Parent=FBtr0074344,FBtr0074345;parent_type=mRNA" - - - -	20651	16,828,538 – 16,828,641	+	5	110	78.30	-2.30	0.68	0.977246
				20652	16,828,538 – 16,828,641	-	5	110	78.30	-2.47	0.59	0.965726
				20653	16,828,574 – 16,828,676	+	7	113	65.99	-1.50	0.34	0.563840
14988	dm3.chrX	16,830,841 – 16,830,952	- - - - - - - -	20654	16,830,841 – 16,830,952	+	4	112	87.44	-2.60	0.84	0.983389
14989	dm3.chrX	16,836,551 – 16,836,622	- - CDS="CDS;ID=CDS_CG13001:1_929;Name=CG13001-cds;Parent=FBtr0074417;parent_type=mRNA" - - - - -	20655	16,836,551 – 16,836,622	+	11	72	87.28	-2.49	0.87	0.990939
14989	dm3.chrX	16,836,551 – 16,836,622		20656	16,836,551 – 16,836,622	-	11	72	87.28	-3.11	0.40	0.756518
14990	dm3.chrX	16,840,469 – 16,840,619	- - - - - - - -	20657	16,840,469 – 16,840,583	+	5	115	77.71	-2.24	0.59	0.955744
14990	dm3.chrX	16,840,469 – 16,840,619	- - - - - - - -	20658	16,840,508 – 16,840,619	+	5	114	70.77	-1.77	0.46	0.854248
14991	dm3.chrX	16,840,775 – 16,840,838	- - - - - - - -	20659	16,840,775 – 16,840,838	+	6	66	81.04	-2.32	0.71	0.980705
14992	dm3.chrX	16,858,022 – 16,858,120	- - - intron="intron;ID=intron_CG9086:2_CG9086:3;Name=CG9086-in;Parent=FBtr0074415;parent_type=mRNA" - - - -	20660	16,858,022 – 16,858,120	+	7	106	62.59	-2.41	0.32	0.971864
14993	dm3.chrX	16,858,841 – 16,858,938	- - - intron="intron;ID=intron_CG9086:2_CG9086:3;Name=CG9086-in;Parent=FBtr0074415;parent_type=mRNA" - - - -	20661	16,858,841 – 16,858,938	+	3	97	94.50	-1.26	0.95	0.681926
14994	dm3.chrX	16,867,008 – 16,867,065	- - - intron="intron;ID=intron_FBgn0030810:3_FBgn0030810:2;Name=CG9059-in;Parent=FBtr0074413,FBtr0299584;parent_type=mRNA" - - - -	20662	16,867,008 – 16,867,065	-	13	59	88.57	-2.63	0.71	0.974120
14995	dm3.chrX	16,876,293 – 16,876,348	- - - intron="intron;ID=intron_FBgn0030810:11_FBgn0030810:10;Name=CG9059-in;Parent=FBtr0074413,FBtr0299585;parent_type=mRNA" - - - -	20663	16,876,293 – 16,876,348	+	4	55	57.58	-1.13	0.44	0.853988
14996	dm3.chrX	16,894,207 – 16,894,306	- - - - - - - -	20664	16,894,207 – 16,894,306	+	7	103	65.36	-0.68	0.44	0.554915
14997	dm3.chrX	16,895,165 – 16,895,260	- - - - - - - -	20665	16,895,165 – 16,895,260	+	5	96	90.99	-2.93	0.86	0.991097
14998	dm3.chrX	16,897,604 – 16,897,694	- - - - - - - -	20666	16,897,604 – 16,897,694	+	7	102	57.19	-2.51	0.32	0.996642
14999	dm3.chrX	16,901,702 – 16,901,786	- - - - - - - -	20667	16,901,702 – 16,901,786	+	9	94	77.49	-1.52	0.49	0.500000
15000	dm3.chrX	16,903,667 – 16,903,816	- - - - - - - -	20668	16,903,667 – 16,903,776	-	5	109	96.31	-1.84	0.88	0.735243
				20669	16,903,697 – 16,903,816	+	6	119	79.21	-1.53	0.65	0.773654
				20670	16,903,697 – 16,903,816	-	6	119	79.21	-1.89	0.66	0.934131
15001	dm3.chrX	16,905,965 – 16,906,037	- - - - - - - -	20671	16,905,965 – 16,906,037	+	6	75	85.94	-1.80	0.72	0.689255
15002	dm3.chrX	16,907,029 – 16,907,103	- - - - - - - -	20672	16,907,029 – 16,907,103	-	6	92	69.32	-1.44	0.62	0.939182
15003	dm3.chrX	16,914,002 – 16,914,114	- - - - - - - -	20673	16,914,002 – 16,914,112	-	5	112	91.47	-2.45	0.80	0.927926
15003	dm3.chrX	16,914,002 – 16,914,114	- - - - - - - -	20674	16,914,004 – 16,914,114	-	5	112	91.47	-2.23	0.80	0.864671
15004	dm3.chrX	16,915,349 – 16,915,446	- - - - - - - -	20675	16,915,349 – 16,915,446	-	5	110	73.44	-0.89	0.68	0.544213
15005	dm3.chrX	16,917,092 – 16,917,208	- - CDS="CDS;ID=CDS_FBgn0030811:1_955;Name=CG12433-cds;Parent=FBtr0299578;parent_type=mRNA" - - - - -	20676	16,917,092 – 16,917,208	-	5	116	71.72	-0.94	0.56	0.510556
15006	dm3.chrX	16,924,870 – 16,924,967	- - - - - - - -	20677	16,924,870 – 16,924,967	+	5	97	93.71	-2.12	0.84	0.849430
15007	dm3.chrX	16,938,339 – 16,938,415	- - - - - - - -	20678	16,938,339 – 16,938,415	+	11	90	82.82	-1.88	0.59	0.627171
15008	dm3.chrX	16,938,739 – 16,938,841	- - - - - - - -	20679	16,938,739 – 16,938,841	-	5	105	74.81	-1.51	0.55	0.677333
15009	dm3.chrX	16,947,948 – 16,948,048	- - - - - - - -	20680	16,947,948 – 16,948,048	+	7	106	58.88	-1.83	0.26	0.857431
15009	dm3.chrX	16,947,948 – 16,948,048	- - - - - - - -	20681	16,947,948 – 16,948,048	-	7	106	58.88	-1.06	0.41	0.912556
15010	dm3.chrX	16,952,673 – 16,952,785	- - - - - - - -	20682	16,952,673 – 16,952,785	-	3	114	95.91	-1.57	0.91	0.663921
15011	dm3.chrX	16,954,304 – 16,954,396	- - - - - - - -	20683	16,954,304 – 16,954,396	+	3	109	51.16	-0.52	0.68	0.885300
15012	dm3.chrX	16,958,936 – 16,959,046	- - - - - - - -	20684	16,958,936 – 16,959,046	-	4	127	76.08	-2.23	0.67	0.950677
15013	dm3.chrX	16,962,789 – 16,962,883	- - - - - - - -	20685	16,962,789 – 16,962,883	-	6	101	89.97	-1.62	0.83	0.669677
15014	dm3.chrX	16,970,947 – 16,971,012	- - CDS="CDS;ID=CDS_FBgn0030812:16_1021;Name=CG8949-cds;Parent=FBtr0074412,FBtr0304839,FBtr0304840;parent_type=mRNA" - - - - -	20686	16,970,947 – 16,971,012	+	13	73	81.19	-1.41	0.77	0.908631
15015	dm3.chrX	16,975,640 – 16,975,757	- - CDS="CDS;ID=CDS_CG4955:1_929;Name=CG4955-cds;Parent=FBtr0074382;parent_type=mRNA" intron="intron;ID=intron_CG8945:3_CG8945:4;Name=CG8945-in;Parent=FBtr0074411;parent_type=mRNA" - - - -	20687	16,975,640 – 16,975,757	+	4	117	87.61	-2.18	0.77	0.876117
15016	dm3.chrX	16,976,208 – 16,976,313	- - CDS="CDS;ID=CDS_CG4955:1_929;Name=CG4955-cds;Parent=FBtr0074382;parent_type=mRNA" intron="intron;ID=intron_CG8945:3_CG8945:4;Name=CG8945-in;Parent=FBtr0074411;parent_type=mRNA" - - - -	20688	16,976,208 – 16,976,313	-	6	114	63.17	-0.95	0.45	0.752179
15017	dm3.chrX	16,976,427 – 16,976,528	- - CDS="CDS;ID=CDS_CG4955:1_929;Name=CG4955-cds;Parent=FBtr0074382;parent_type=mRNA" intron="intron;ID=intron_CG8945:3_CG8945:4;Name=CG8945-in;Parent=FBtr0074411;parent_type=mRNA" - - - -	20689	16,976,427 – 16,976,528	+	6	101	73.40	-1.41	0.56	0.870222
15018	dm3.chrX	16,983,050 – 16,983,103	- - - - - - - -	20690	16,983,050 – 16,983,103	+	6	66	63.49	-0.94	0.78	0.967316
15018	dm3.chrX	16,983,050 – 16,983,103	- - - - - - - -	20691	16,983,050 – 16,983,103	-	6	66	63.49	-0.81	0.60	0.826462
15019	dm3.chrX	16,987,843 – 16,987,948	- - - intron="intron;ID=intron_CG16700:1_CG16700:2;Name=CG16700-in;Parent=FBtr0074383;parent_type=mRNA" - - - -	20692	16,987,843 – 16,987,948	-	4	108	70.65	-1.94	0.56	0.953136
15020	dm3.chrX	17,016,343 – 17,016,434	- - - intron="intron;ID=intron_FBgn0260748:1_FBgn0260748:2;Name=CG5004-in;Parent=FBtr0074386;parent_type=mRNA" - - - -	20693	17,016,343 – 17,016,434	+	3	97	79.15	-2.10	0.63	0.739704
15021	dm3.chrX	17,037,083 – 17,037,176	- - - - - - - -	20694	17,037,083 – 17,037,176	+	3	93	82.35	-2.09	0.68	0.704981
15022	dm3.chrX	17,037,941 – 17,038,066	FBnoncoding="snoRNA;ID=FBtr0113563;Name=snoRNA:Psi28S-1192d-RA;Parent=FBgn0082998;Dbxref=FlyBase_Annotation_IDs:CR34594-RA,REFSEQ:NR_003736;score_text=Weakly" - - intron="intron;ID=intron_CG8922:4_CG8922:5;Name=RpS5a-in;Parent=FBtr0074406;parent_type=mRNA" "Rfam_10.0=RF00542;snopsi28S-1192;AAPQ01006005.1/2860-2997\|1.4e-28" - - -	20695	17,037,941 – 17,038,066	-	12	130	71.10	-0.77	0.56	0.813542
15023	dm3.chrX	17,038,172 – 17,038,274	FBnoncoding="snoRNA;ID=FBtr0113564;Name=snoRNA:Psi28S-1192c-RA;Parent=FBgn0082999;Dbxref=FlyBase_Annotation_IDs:CR34595-RA,REFSEQ:NR_003737;score_text=Weakly" - - intron="intron;ID=intron_CG8922:4_CG8922:5;Name=RpS5a-in;Parent=FBtr0074406;parent_type=mRNA" "Rfam_10.0=RF00542;snopsi28S-1192;AAPQ01006005.1/2860-2997\|1.3e-40" - - -	20696	17,038,172 – 17,038,274	-	12	116	72.39	-1.28	0.49	0.853790
15024	dm3.chrX	17,038,364 – 17,038,451	FBnoncoding="snoRNA;ID=FBtr0113565;Name=snoRNA:Psi28S-1192b-RA;Parent=FBgn0083000;Dbxref=FlyBase_Annotation_IDs:CR34596-RA,REFSEQ:NR_003738;score_text=Weakly" - - intron="intron;ID=intron_CG8922:4_CG8922:5;Name=RpS5a-in;Parent=FBtr0074406;parent_type=mRNA" "Rfam_10.0=RF00542;snopsi28S-1192;AC010921.12/27346-27486\|4.3e-43" - - -	20697	17,038,364 – 17,038,451	-	12	94	81.46	-1.20	0.75	0.789242
15025	dm3.chrX	17,039,414 – 17,039,911	FBnoncoding="snoRNA;ID=FBtr0113568;Name=snoRNA:Psi28S-1135f-RA;Parent=FBgn0083007;Dbxref=FlyBase_Annotation_IDs:CR34599-RA,REFSEQ:NR_003741;score_text=Weakly" - - intron="intron;ID=intron_CG8922:2_CG8922:3;Name=RpS5a-in;Parent=FBtr0074406;parent_type=mRNA" "Rfam_10.0=RF00540;snopsi18S-1854;AC012160.7/77140-77294\|1.5e-62" - - -	20698	17,039,414 – 17,039,515	-	12	115	72.49	-1.35	0.63	0.969761
				20699	17,039,486 – 17,039,583	+	11	108	54.15	-2.08	0.30	0.994059
				20700	17,039,486 – 17,039,583	-	11	108	54.15	-2.18	0.23	0.980124
				20701	17,039,488 – 17,039,583	+	10	105	57.35	-2.03	0.38	0.997683
				20702	17,039,488 – 17,039,583	-	10	105	57.35	-2.17	0.46	0.999620
				20703	17,039,583 – 17,039,642	-	12	62	76.91	-0.90	0.79	0.883298
				20704	17,039,642 – 17,039,753	-	12	137	68.49	-2.66	0.83	0.999350
				20705	17,039,753 – 17,039,911	+	12	182	65.24	-1.69	0.31	0.805812
				20706	17,039,753 – 17,039,911	-	12	182	65.24	-2.01	0.39	0.988616
15026	dm3.chrX	17,040,020 – 17,040,082	FBnoncoding="snoRNA;ID=FBtr0113571;Name=snoRNA:Psi18S-1854a-RA;Parent=FBgn0083042;Dbxref=FlyBase_Annotation_IDs:CR34602-RA,REFSEQ:NR_003744;score_text=Weakly" - - intron="intron;ID=intron_CG8922:2_CG8922:3;Name=RpS5a-in;Parent=FBtr0074406;parent_type=mRNA" "Rfam_10.0=RF00540;snopsi18S-1854;AABU01002771.1/6317023-6317176\|2.3e-28" - - -	20707	17,040,020 – 17,040,082	-	12	75	73.55	-2.58	0.92	0.997959
15027	dm3.chrX	17,040,609 – 17,040,718	- - - intron="intron;ID=intron_CG8922:2_CG8922:3;Name=RpS5a-in;Parent=FBtr0074406;parent_type=mRNA" - - - -	20708	17,040,609 – 17,040,718	+	11	114	61.91	-0.42	0.49	0.710006
15027	dm3.chrX	17,040,609 – 17,040,718		20709	17,040,609 – 17,040,718	-	11	114	61.91	-1.24	0.70	0.997672
15028	dm3.chrX	17,045,667 – 17,045,744	- - - - - - - -	20710	17,045,667 – 17,045,744	+	4	77	98.05	-0.99	0.97	0.500000
15029	dm3.chrX	17,046,244 – 17,046,374	- - CDS="CDS;ID=CDS_FBgn0016080:1_938;Name=xmas-1-cds;Parent=FBtr0074405;parent_type=mRNA" - - - - -	20711	17,046,244 – 17,046,340	-	6	119	65.79	-1.34	0.44	0.645930
15029	dm3.chrX	17,046,244 – 17,046,374		20712	17,046,278 – 17,046,374	-	5	96	85.42	-1.71	0.71	0.521210
15030	dm3.chrX	17,047,276 – 17,047,385	- - CDS="CDS;ID=CDS_FBgn0016080:2_938;Name=xmas-1-cds;Parent=FBtr0074405;parent_type=mRNA" - - - - -	20713	17,047,276 – 17,047,385	+	5	109	88.17	-1.44	0.85	0.680685
15031	dm3.chrX	17,056,240 – 17,056,297	- - - intron="intron;ID=intron_FBgn0000163:1_FBgn0000163:3;Name=baz-in;Parent=FBtr0074388;parent_type=mRNA" - - - -	20714	17,056,240 – 17,056,297	+	7	58	83.36	-2.23	0.72	0.951170
15032	dm3.chrX	17,058,374 – 17,058,477	- - - intron="intron;ID=intron_FBgn0000163:1_FBgn0000163:3;Name=baz-in;Parent=FBtr0074388;parent_type=mRNA" - - - -	20715	17,058,374 – 17,058,474	+	5	102	72.38	-1.29	0.56	0.612498
				20716	17,058,374 – 17,058,474	-	5	102	72.38	-1.40	0.72	0.940342
				20717	17,058,377 – 17,058,477	-	5	102	72.84	-1.46	0.70	0.952518
15033	dm3.chrX	17,058,637 – 17,058,722	- - - intron="intron;ID=intron_FBgn0000163:1_FBgn0000163:3;Name=baz-in;Parent=FBtr0074388;parent_type=mRNA" - - - -	20718	17,058,637 – 17,058,722	+	5	89	90.73	-2.81	0.85	0.987616
15034	dm3.chrX	17,059,515 – 17,059,644	- - - intron="intron;ID=intron_FBgn0000163:1_FBgn0000163:3;Name=baz-in;Parent=FBtr0074388;parent_type=mRNA" - - - -	20719	17,059,515 – 17,059,633	-	5	119	92.81	-1.43	0.90	0.666520
				20720	17,059,526 – 17,059,644	+	5	119	92.81	-1.60	0.89	0.746116
				20721	17,059,526 – 17,059,644	-	5	119	92.81	-1.72	0.92	0.883868
15035	dm3.chrX	17,060,228 – 17,060,304	- - - intron="intron;ID=intron_FBgn0000163:1_FBgn0000163:3;Name=baz-in;Parent=FBtr0074388;parent_type=mRNA" - - - -	20722	17,060,228 – 17,060,304	-	5	77	69.69	-1.28	0.48	0.613279
15036	dm3.chrX	17,060,603 – 17,060,701	- - - intron="intron;ID=intron_FBgn0000163:1_FBgn0000163:3;Name=baz-in;Parent=FBtr0074388;parent_type=mRNA" - - - -	20723	17,060,603 – 17,060,701	-	6	107	67.62	-1.58	0.36	0.515343
15037	dm3.chrX	17,063,355 – 17,063,429	- - - intron="intron;ID=intron_FBgn0000163:1_FBgn0000163:3;Name=baz-in;Parent=FBtr0074388;parent_type=mRNA" - - - -	20724	17,063,355 – 17,063,429	+	5	77	91.59	-1.52	0.90	0.762751
15038	dm3.chrX	17,075,334 – 17,075,399	- - - intron="intron;ID=intron_FBgn0000163:1_FBgn0000163:3;Name=baz-in;Parent=FBtr0074388;parent_type=mRNA" - - - -	20725	17,075,334 – 17,075,399	-	5	66	91.47	-1.75	0.87	0.793649
15039	dm3.chrX	17,079,367 – 17,079,476	- - - intron="intron;ID=intron_FBgn0000163:1_FBgn0000163:3;Name=baz-in;Parent=FBtr0074388;parent_type=mRNA" - - - -	20726	17,079,367 – 17,079,476	-	4	111	66.51	-1.03	0.58	0.648336
15040	dm3.chrX	17,105,018 – 17,105,118	- - - - - - - -	20727	17,105,018 – 17,105,118	+	5	117	82.66	-2.22	0.73	0.933047
15040	dm3.chrX	17,105,018 – 17,105,118	- - - - - - - -	20728	17,105,018 – 17,105,118	-	5	117	82.66	-1.56	0.73	0.571686
15041	dm3.chrX	17,115,219 – 17,115,310	- - - - - - - -	20729	17,115,219 – 17,115,310	+	8	99	70.31	-2.50	0.52	0.997346
15042	dm3.chrX	17,117,951 – 17,118,045	- - - - - - - -	20730	17,117,951 – 17,118,045	+	7	104	64.11	-0.28	0.56	0.672354
15043	dm3.chrX	17,121,046 – 17,121,119	- - - - - - - -	20731	17,121,046 – 17,121,119	-	6	74	85.00	-2.04	0.63	0.692529
15044	dm3.chrX	17,129,805 – 17,129,885	- - - intron="intron;ID=intron_FBgn0262111:1_FBgn0262111:2;Name=f-in;Parent=FBtr0304067;parent_type=mRNA" - - - -	20732	17,129,805 – 17,129,885	+	6	93	69.88	-1.42	0.47	0.692622
15044	dm3.chrX	17,129,805 – 17,129,885		20733	17,129,805 – 17,129,885	-	6	93	69.88	-1.50	0.51	0.861176
15045	dm3.chrX	17,133,917 – 17,134,096	- - - intron="intron;ID=intron_FBgn0262111:1_FBgn0262111:2;Name=f-in;Parent=FBtr0304067;parent_type=mRNA" - - - -	20734	17,133,917 – 17,134,023	+	7	118	74.57	-1.85	0.45	0.582260
				20735	17,133,944 – 17,134,057	+	5	119	83.19	-1.52	0.80	0.811920
				20736	17,133,984 – 17,134,096	+	5	118	78.16	-1.72	0.61	0.759877
15046	dm3.chrX	17,135,848 – 17,135,973	- - CDS="CDS;ID=CDS_FBgn0030833:1_980;Name=CG8915-cds;Parent=FBtr0074447;parent_type=mRNA" intron="intron;ID=intron_FBgn0262111:1_FBgn0262111:2;Name=f-in;Parent=FBtr0304067;parent_type=mRNA" - - - -	20737	17,135,848 – 17,135,973	-	7	126	66.21	-2.21	0.36	0.985213
15047	dm3.chrX	17,142,448 – 17,142,545	- - - - - - - -	20738	17,142,448 – 17,142,545	-	5	97	82.27	-1.65	0.69	0.650182
15048	dm3.chrX	17,144,917 – 17,145,020	- - - intron="intron;ID=intron_FBgn0262111:2_FBgn0262111:5;Name=f-in;Parent=FBtr0304067;parent_type=mRNA" - - - -	20739	17,144,917 – 17,145,020	-	6	111	71.50	-1.62	0.49	0.887004
15049	dm3.chrX	17,157,699 – 17,157,799	- - - intron="intron;ID=intron_FBgn0262111:5_FBgn0262111:9;Name=f-in;Parent=FBtr0304061;parent_type=mRNA" - - - -	20740	17,157,699 – 17,157,799	-	10	115	62.03	-0.68	0.51	0.909780
15050	dm3.chrX	17,161,568 – 17,161,672	- - - intron="intron;ID=intron_FBgn0262111:7_FBgn0262111:9;Name=f-in;Parent=FBtr0304068;parent_type=mRNA" - - - -	20741	17,161,568 – 17,161,672	-	5	116	66.55	-1.20	0.44	0.549670
15051	dm3.chrX	17,174,279 – 17,174,339	- - CDS="CDS;ID=CDS_FBgn0262111:22_980;Name=f-cds;Parent=FBtr0304063,FBtr0304064,FBtr0304066;parent_type=mRNA" - - - - -	20742	17,174,279 – 17,174,339	+	4	68	58.59	-1.19	0.71	0.990686
15052	dm3.chrX	17,181,683 – 17,181,817	- - - intron="intron;ID=intron_CG8649:2_CG8649:3;Name=Fim-in;Parent=FBtr0074441,FBtr0074442,FBtr0074443;parent_type=mRNA" - - - -	20743	17,181,683 – 17,181,786	+	4	104	73.26	-1.49	0.69	0.896984
15052	dm3.chrX	17,181,683 – 17,181,817		20744	17,181,707 – 17,181,817	+	5	120	76.26	-1.20	0.69	0.665697
15053	dm3.chrX	17,188,318 – 17,188,421	- - - - - - - -	20745	17,188,318 – 17,188,421	+	6	105	68.23	-0.94	0.53	0.744388
15054	dm3.chrX	17,192,983 – 17,193,083	- - - intron="intron;ID=intron_CG8649:6_CG8649:7;Name=Fim-in;Parent=FBtr0074442;parent_type=mRNA" - - - -	20746	17,192,983 – 17,193,083	+	8	109	69.10	-1.27	0.47	0.781469
15055	dm3.chrX	17,194,317 – 17,194,430	- - - intron="intron;ID=intron_CG8649:6_CG8649:7;Name=Fim-in;Parent=FBtr0074442;parent_type=mRNA" - - - -	20747	17,194,317 – 17,194,430	-	5	119	85.71	-1.83	0.75	0.764898
15056	dm3.chrX	17,195,820 – 17,195,978	- - - - - - - -	20748	17,195,820 – 17,195,940	-	5	120	97.00	-1.38	0.97	0.805872
15056	dm3.chrX	17,195,820 – 17,195,978	- - - - - - - -	20749	17,195,860 – 17,195,978	-	5	120	96.97	-1.09	0.96	0.563687
15057	dm3.chrX	17,207,203 – 17,207,309	- - - - - - - -	20750	17,207,203 – 17,207,309	+	4	106	83.23	-1.42	0.80	0.695103
15058	dm3.chrX	17,208,922 – 17,209,013	- - CDS="CDS;ID=CDS_CG5488:1_904;Name=B-H2-cds;Parent=FBtr0074429;parent_type=mRNA" - - - - -	20751	17,208,922 – 17,209,013	-	9	114	70.57	-1.38	0.45	0.512704
15059	dm3.chrX	17,213,165 – 17,213,259	- - - intron="intron;ID=intron_CG5488:1_CG5488:2;Name=B-H2-in;Parent=FBtr0074429;parent_type=mRNA" - - - -	20752	17,213,165 – 17,213,258	-	4	93	97.31	-1.17	0.95	0.546143
15059	dm3.chrX	17,213,165 – 17,213,259		20753	17,213,165 – 17,213,259	-	4	94	96.81	-1.19	0.95	0.580098
15060	dm3.chrX	17,216,809 – 17,216,923	- - CDS="CDS;ID=CDS_CG5488:3_904;Name=B-H2-cds;Parent=FBtr0074429;parent_type=mRNA" - - - - -	20754	17,216,809 – 17,216,923	-	10	120	67.15	-1.71	0.36	0.936371
15061	dm3.chrX	17,219,102 – 17,219,193	- - - - - - - -	20755	17,219,102 – 17,219,193	+	9	110	68.07	-1.80	0.39	0.847280
15062	dm3.chrX	17,233,246 – 17,233,345	- - - - - - - -	20756	17,233,246 – 17,233,345	+	10	102	92.18	-1.36	0.98	0.907799
15063	dm3.chrX	17,234,137 – 17,234,229	- - - - - - - -	20757	17,234,137 – 17,234,229	+	9	96	81.67	-1.67	0.70	0.853822
15064	dm3.chrX	17,236,038 – 17,236,099	- - - - - - - -	20758	17,236,038 – 17,236,099	-	5	70	58.15	-1.17	0.43	0.917632
15065	dm3.chrX	17,240,515 – 17,240,625	- - - - - - - -	20759	17,240,515 – 17,240,625	+	5	110	95.09	-1.68	0.96	0.913456
15065	dm3.chrX	17,240,515 – 17,240,625	- - - - - - - -	20760	17,240,515 – 17,240,625	-	5	110	95.09	-2.09	0.88	0.885021
15066	dm3.chrX	17,248,588 – 17,248,686	- - - - - - - -	20761	17,248,588 – 17,248,686	-	12	120	79.51	-1.92	0.49	0.627138
15067	dm3.chrX	17,252,478 – 17,252,591	- - - - - - - -	20762	17,252,478 – 17,252,591	-	6	113	81.00	-1.97	0.63	0.895258
15068	dm3.chrX	17,257,096 – 17,257,186	- - - - - - - -	20763	17,257,096 – 17,257,186	+	5	93	74.53	-2.84	0.26	0.540086
15069	dm3.chrX	17,263,291 – 17,263,410	- - - - - - - -	20764	17,263,291 – 17,263,410	-	7	119	70.79	-1.67	0.39	0.710703
15070	dm3.chrX	17,264,981 – 17,265,087	- - - - - - - -	20765	17,264,981 – 17,265,087	+	7	106	70.69	-1.46	0.51	0.939142
15070	dm3.chrX	17,264,981 – 17,265,087	- - - - - - - -	20766	17,264,981 – 17,265,087	-	7	106	70.69	-1.92	0.45	0.968330
15071	dm3.chrX	17,274,193 – 17,274,243	- - - - - - - -	20767	17,274,193 – 17,274,243	+	4	50	98.00	-5.16	0.99	0.998620
15071	dm3.chrX	17,274,193 – 17,274,243	- - - - - - - -	20768	17,274,193 – 17,274,243	-	4	50	98.00	-2.45	1.00	0.990356
15072	dm3.chrX	17,274,347 – 17,274,437	- - - - - - - -	20769	17,274,347 – 17,274,437	+	6	94	76.79	-2.87	0.55	0.991932
15073	dm3.chrX	17,289,235 – 17,289,352	- - - - - - - -	20770	17,289,235 – 17,289,352	+	12	120	96.20	-1.04	1.00	0.778019
15073	dm3.chrX	17,289,235 – 17,289,352	- - - - - - - -	20771	17,289,235 – 17,289,352	+	12	119	96.48	-1.10	1.00	0.805006
15074	dm3.chrX	17,295,962 – 17,296,058	- - CDS="CDS;ID=CDS_CG5529:3_905;Name=B-H1-cds;Parent=FBtr0074430;parent_type=mRNA" - - - - -	20772	17,295,962 – 17,296,058	+	7	117	61.61	-1.68	0.42	0.973390
15075	dm3.chrX	17,297,457 – 17,297,566	- - - - - - - -	20773	17,297,457 – 17,297,566	+	9	111	94.58	-1.80	0.93	0.914700
15076	dm3.chrX	17,305,018 – 17,305,126	- - - - - - - -	20774	17,305,018 – 17,305,126	+	9	115	81.95	-1.10	0.72	0.536600
15077	dm3.chrX	17,305,850 – 17,305,944	- - - - - - - -	20775	17,305,850 – 17,305,944	+	13	102	77.87	-1.36	0.49	0.566626
15078	dm3.chrX	17,317,820 – 17,317,938	- - - intron="intron;ID=intron_FBgn0040877:3_FBgn0040877:2;Name=CG12994-in;Parent=FBtr0074438;parent_type=mRNA" - - - -	20776	17,317,820 – 17,317,938	-	6	128	66.88	-1.05	0.47	0.763417
15079	dm3.chrX	17,321,069 – 17,321,181	- - - intron="intron;ID=intron_CG5613:3_CG5613:4;Name=CG5613-in;Parent=FBtr0074431,FBtr0074432;parent_type=mRNA" - - - -	20777	17,321,069 – 17,321,181	-	5	120	79.15	-1.97	0.51	0.557849
15080	dm3.chrX	17,326,406 – 17,326,497	- - - - - - - -	20778	17,326,406 – 17,326,497	+	6	106	71.94	-1.61	0.47	0.732264
15080	dm3.chrX	17,326,406 – 17,326,497	- - - - - - - -	20779	17,326,406 – 17,326,497	-	6	106	71.94	-0.95	0.57	0.516492
15081	dm3.chrX	17,332,012 – 17,332,197	- - - - - - - -	20780	17,332,012 – 17,332,126	+	4	115	90.83	-1.65	0.85	0.679687
				20781	17,332,012 – 17,332,126	-	4	115	90.83	-2.50	0.85	0.967087
				20782	17,332,052 – 17,332,155	+	4	115	86.22	-2.60	0.88	0.990395
				20783	17,332,052 – 17,332,155	-	4	115	86.22	-2.86	0.82	0.990912
				20784	17,332,092 – 17,332,194	-	4	115	84.82	-2.30	0.70	0.872403
				20785	17,332,095 – 17,332,197	-	4	115	84.38	-2.10	0.63	0.575128
15082	dm3.chrX	17,333,255 – 17,333,346	- - - - - - - -	20786	17,333,255 – 17,333,346	-	5	92	93.76	-1.81	0.83	0.618120
15083	dm3.chrX	17,333,645 – 17,333,745	- - - - - - - -	20787	17,333,645 – 17,333,745	+	4	100	85.50	-2.73	0.80	0.987213
15083	dm3.chrX	17,333,645 – 17,333,745	- - - - - - - -	20788	17,333,645 – 17,333,745	-	4	100	85.50	-2.26	0.63	0.682173
15084	dm3.chrX	17,334,239 – 17,334,351	- - - - - - - -	20789	17,334,239 – 17,334,351	-	5	116	82.68	-2.51	0.65	0.943879
15085	dm3.chrX	17,344,656 – 17,344,709	- - CDS="CDS;ID=CDS_CG8568:2_924;Name=CG8568-cds;Parent=FBtr0074436;parent_type=mRNA" - - - - -	20790	17,344,656 – 17,344,709	+	3	53	86.79	-1.90	0.82	0.823646
15086	dm3.chrX	17,347,897 – 17,348,017	- - - - - - - -	20791	17,347,897 – 17,348,017	-	4	120	90.97	-1.41	0.89	0.658978
15087	dm3.chrX	17,351,427 – 17,351,579	- - - - - - - -	20792	17,351,427 – 17,351,579	-	5	166	75.82	-1.70	0.69	0.936106
15088	dm3.chrX	17,352,184 – 17,352,301	- - - - - - - -	20793	17,352,184 – 17,352,301	-	13	118	79.98	-2.10	0.67	0.991661
15089	dm3.chrX	17,354,398 – 17,354,495	- - CDS="CDS;ID=CDS_FBgn0030842:1_959;Name=CG8557-cds;Parent=FBtr0300436;parent_type=mRNA" - - - - -	20794	17,354,398 – 17,354,495	-	13	101	75.53	-0.38	0.65	0.548543
15090	dm3.chrX	17,359,904 – 17,359,999	- - - intron="intron;ID=intron_FBgn0030842:6_FBgn0030842:5;Name=CG8557-in;Parent=FBtr0074434;parent_type=mRNA" - - - -	20795	17,359,904 – 17,359,999	-	6	110	81.20	-2.34	0.64	0.942604
15091	dm3.chrX	17,362,578 – 17,362,677	- - - intron="intron;ID=intron_FBgn0030842:6_FBgn0030842:5;Name=CG8557-in;Parent=FBtr0074434;parent_type=mRNA" - - - -	20796	17,362,578 – 17,362,677	+	5	116	75.50	-2.38	0.68	0.991172
15092	dm3.chrX	17,366,867 – 17,366,962	- - - intron="intron;ID=intron_FBgn0030842:6_FBgn0030842:5;Name=CG8557-in;Parent=FBtr0074434;parent_type=mRNA" - - - -	20797	17,366,867 – 17,366,962	+	3	95	64.00	-3.18	0.26	0.897311
15092	dm3.chrX	17,366,867 – 17,366,962		20798	17,366,867 – 17,366,962	-	3	95	64.00	-2.94	0.29	0.878228
15093	dm3.chrX	17,372,961 – 17,373,039	- - - intron="intron;ID=intron_FBgn0030842:6_FBgn0030842:5;Name=CG8557-in;Parent=FBtr0074434;parent_type=mRNA" - - - -	20799	17,372,961 – 17,373,039	+	5	85	68.94	-1.16	0.51	0.628159
15094	dm3.chrX	17,373,832 – 17,373,908	- - - intron="intron;ID=intron_FBgn0030842:6_FBgn0030842:5;Name=CG8557-in;Parent=FBtr0074434;parent_type=mRNA" - - - -	20800	17,373,832 – 17,373,908	-	9	77	78.79	-2.09	0.54	0.964597
15095	dm3.chrX	17,374,823 – 17,374,937	- - - intron="intron;ID=intron_FBgn0030842:6_FBgn0030842:5;Name=CG8557-in;Parent=FBtr0074434;parent_type=mRNA" - - - -	20801	17,374,823 – 17,374,937	+	5	114	82.91	-2.16	0.74	0.943487
15096	dm3.chrX	17,379,288 – 17,379,389	- - - intron="intron;ID=intron_FBgn0030842:6_FBgn0030842:5;Name=CG8557-in;Parent=FBtr0074434;parent_type=mRNA" - - - -	20802	17,379,288 – 17,379,389	-	4	111	73.06	-2.61	0.40	0.856874
15097	dm3.chrX	17,384,956 – 17,385,043	- - - - - - - -	20803	17,384,956 – 17,385,043	+	6	104	76.45	-2.91	0.82	0.998374
15097	dm3.chrX	17,384,956 – 17,385,043	- - - - - - - -	20804	17,384,956 – 17,385,043	-	6	104	76.45	-1.67	0.69	0.917121
15098	dm3.chrX	17,391,194 – 17,391,287	- - - intron="intron;ID=intron_FBgn0030842:8_FBgn0030842:7;Name=CG8557-in;Parent=FBtr0300436;parent_type=mRNA" - - - -	20805	17,391,194 – 17,391,287	+	6	100	73.79	-1.95	0.55	0.956825
15099	dm3.chrX	17,391,745 – 17,391,842	- - - intron="intron;ID=intron_FBgn0030842:8_FBgn0030842:7;Name=CG8557-in;Parent=FBtr0300436;parent_type=mRNA" - - - -	20806	17,391,745 – 17,391,842	-	5	100	95.45	-2.20	0.80	0.695236
15100	dm3.chrX	17,392,314 – 17,392,384	- - - intron="intron;ID=intron_FBgn0030842:8_FBgn0030842:7;Name=CG8557-in;Parent=FBtr0300436;parent_type=mRNA" - - - -	20807	17,392,314 – 17,392,384	-	4	70	95.95	-1.44	0.91	0.592943
15101	dm3.chrX	17,397,782 – 17,397,889	- - - - - - - -	20808	17,397,782 – 17,397,888	-	7	115	71.71	-1.06	0.59	0.650071
15101	dm3.chrX	17,397,782 – 17,397,889	- - - - - - - -	20809	17,397,783 – 17,397,889	-	7	115	71.01	-1.10	0.59	0.737655
15102	dm3.chrX	17,398,122 – 17,398,242	- - - - - - - -	20810	17,398,122 – 17,398,242	+	5	120	86.13	-1.73	0.81	0.822961
15103	dm3.chrX	17,399,646 – 17,399,749	- - - - - - - -	20811	17,399,646 – 17,399,749	+	4	110	79.01	-2.08	0.65	0.884631
15104	dm3.chrX	17,401,095 – 17,401,207	- - - - - - - -	20812	17,401,095 – 17,401,207	-	4	113	97.78	-1.12	0.96	0.549701
15105	dm3.chrX	17,411,339 – 17,411,449	- - - - - - - -	20813	17,411,339 – 17,411,449	+	6	120	69.22	-1.74	0.38	0.694698
15106	dm3.chrX	17,416,213 – 17,416,326	- - - - - - - -	20814	17,416,213 – 17,416,326	+	4	118	71.72	-1.98	0.46	0.783300
15106	dm3.chrX	17,416,213 – 17,416,326	- - - - - - - -	20815	17,416,213 – 17,416,326	-	4	118	71.72	-1.52	0.52	0.623634
15107	dm3.chrX	17,418,450 – 17,418,504	- - - - - - - -	20816	17,418,450 – 17,418,504	+	5	54	94.44	-2.74	0.86	0.974824
15108	dm3.chrX	17,436,015 – 17,436,255	- - - - - - - -	20817	17,436,015 – 17,436,135	+	4	120	80.00	-2.18	0.58	0.799816
				20818	17,436,135 – 17,436,255	+	5	120	90.58	-2.06	0.84	0.895757
				20819	17,436,135 – 17,436,255	-	5	120	90.58	-2.56	0.77	0.937520
15109	dm3.chrX	17,438,441 – 17,438,552	- - - - - - - -	20820	17,438,441 – 17,438,541	+	7	110	73.80	-1.97	0.67	0.991449
15109	dm3.chrX	17,438,441 – 17,438,552	- - - - - - - -	20821	17,438,459 – 17,438,552	+	6	93	83.58	-2.26	0.72	0.963618
15110	dm3.chrX	17,445,382 – 17,445,477	- - - - - - - -	20822	17,445,382 – 17,445,477	+	7	105	68.79	-1.79	0.63	0.994991
15110	dm3.chrX	17,445,382 – 17,445,477	- - - - - - - -	20823	17,445,382 – 17,445,477	-	7	105	68.79	-1.36	0.48	0.862355
15111	dm3.chrX	17,446,520 – 17,446,592	- - - - - - - -	20824	17,446,520 – 17,446,592	+	9	74	75.38	-1.72	0.41	0.520573
15112	dm3.chrX	17,451,132 – 17,451,251	- - - - - - - -	20825	17,451,132 – 17,451,251	+	3	120	52.37	-1.26	0.43	0.882738
15113	dm3.chrX	17,455,123 – 17,455,174	- - - - - - - -	20826	17,455,123 – 17,455,174	-	3	51	92.16	-0.87	1.02	0.791919
15114	dm3.chrX	17,456,351 – 17,456,441	- - - - - - - -	20827	17,456,351 – 17,456,441	-	7	104	78.65	-1.52	0.64	0.802338
15115	dm3.chrX	17,461,429 – 17,461,557	- - CDS="CDS;ID=CDS_FBgn0030844:4_951;Name=ppk23-cds;Parent=FBtr0112998;parent_type=mRNA" - - - - -	20828	17,461,429 – 17,461,557	-	12	144	64.29	-1.19	0.37	0.803573
15116	dm3.chrX	17,469,627 – 17,469,720	- - CDS="CDS;ID=CDS_FBgn0028343:7_973;Name=l(1)G0222-cds;Parent=FBtr0301413,FBtr0301414,FBtr0301415;parent_type=mRNA" - - - - -	20829	17,469,627 – 17,469,720	-	6	94	73.00	-1.05	0.58	0.670980
15117	dm3.chrX	17,474,496 – 17,474,663	- - - intron="intron;ID=intron_CG12991:1_CG12991:2;Name=CG12991-in;Parent=FBtr0074448;parent_type=mRNA" - - - -	20830	17,474,496 – 17,474,663	-	5	167	94.91	-1.53	0.89	0.620271
15118	dm3.chrX	17,477,050 – 17,477,211	- - - intron="intron;ID=intron_CG12991:1_CG12991:2;Name=CG12991-in;Parent=FBtr0074448;parent_type=mRNA" - - - -	20831	17,477,050 – 17,477,211	+	4	162	91.21	-1.59	0.83	0.523191
15119	dm3.chrX	17,484,292 – 17,484,466	- - CDS="CDS;ID=CDS_FBgn0030846:1_969;Name=CG12992-cds;Parent=FBtr0300778;parent_type=mRNA" intron="intron;ID=intron_CG12991:2_CG12991:3;Name=CG12991-in;Parent=FBtr0074448,FBtr0074449;parent_type=mRNA" - - - -	20832	17,484,292 – 17,484,357	+	6	65	79.18	-2.17	0.54	0.883298
				20833	17,484,357 – 17,484,466	+	5	120	68.72	-1.78	0.43	0.728328
				20834	17,484,357 – 17,484,466	-	5	120	68.72	-1.91	0.49	0.928684
15120	dm3.chrX	17,486,468 – 17,486,568	- - - - - - - -	20835	17,486,468 – 17,486,568	+	3	100	79.79	-1.73	0.73	0.676791
15121	dm3.chrX	17,490,025 – 17,490,137	- - - - - - - -	20836	17,490,025 – 17,490,137	-	6	114	74.50	-2.04	0.59	0.982870
15122	dm3.chrX	17,491,002 – 17,491,111	- - CDS="CDS;ID=CDS_CG12991:4_896;Name=CG12991-cds;Parent=FBtr0074448,FBtr0074449;parent_type=mRNA" - - - - -	20837	17,491,002 – 17,491,111	+	5	109	76.06	-1.23	0.64	0.664256
15122	dm3.chrX	17,491,002 – 17,491,111		20838	17,491,002 – 17,491,111	-	5	109	76.06	-1.19	0.70	0.779859
15123	dm3.chrX	17,503,091 – 17,503,203	- - - - - - - -	20839	17,503,091 – 17,503,203	+	6	120	72.46	-1.88	0.60	0.981319
15123	dm3.chrX	17,503,091 – 17,503,203	- - - - - - - -	20840	17,503,091 – 17,503,203	-	6	120	72.46	-0.91	0.59	0.570724
15124	dm3.chrX	17,505,078 – 17,505,232	- - - - - - - -	20841	17,505,078 – 17,505,192	+	5	116	94.43	-2.85	0.68	0.803204
15124	dm3.chrX	17,505,078 – 17,505,232	- - - - - - - -	20842	17,505,112 – 17,505,232	+	6	120	72.06	-1.31	0.54	0.879682
15125	dm3.chrX	17,506,345 – 17,506,408	- - - - - - - -	20843	17,506,345 – 17,506,408	-	4	63	87.04	-2.58	0.93	0.993548
15126	dm3.chrX	17,514,320 – 17,514,440	- - - - - - - -	20844	17,514,320 – 17,514,440	+	5	120	85.92	-1.89	0.74	0.764092
15127	dm3.chrX	17,522,779 – 17,522,874	- - CDS="CDS;ID=CDS_CG8326:2_900;Name=CG8326-cds;Parent=FBtr0074486;parent_type=mRNA" - - - - -	20845	17,522,779 – 17,522,874	-	6	111	75.68	-2.01	0.56	0.917558
15128	dm3.chrX	17,524,019 – 17,524,124	- - - - - - - -	20846	17,524,019 – 17,524,124	-	5	105	82.81	-1.81	0.63	0.528986
15129	dm3.chrX	17,524,224 – 17,524,333	- - CDS="CDS;ID=CDS_CG8316:4_896;Name=CG8316-cds;Parent=FBtr0074485;parent_type=mRNA" - - - - -	20847	17,524,224 – 17,524,333	+	6	119	64.20	-0.73	0.46	0.511570
15130	dm3.chrX	17,527,067 – 17,527,162	- - CDS="CDS;ID=CDS_CG5703:3_903;Name=CG5703-cds;Parent=FBtr0074452;parent_type=mRNA" - - - - -	20848	17,527,067 – 17,527,162	-	14	116	73.49	-1.39	0.52	0.660690
15131	dm3.chrX	17,527,824 – 17,527,934	- - - - - - - -	20849	17,527,824 – 17,527,934	+	3	110	96.97	-2.15	0.88	0.852531
15132	dm3.chrX	17,530,395 – 17,530,490	- - CDS="CDS;ID=CDS_CG5800:1_912;Name=CG5800-cds;Parent=FBtr0074453;parent_type=mRNA" - - - - -	20850	17,530,395 – 17,530,490	+	7	101	67.80	-1.39	0.54	0.976278
15132	dm3.chrX	17,530,395 – 17,530,490		20851	17,530,395 – 17,530,490	-	7	101	67.80	-1.67	0.56	0.993036
15133	dm3.chrX	17,536,191 – 17,536,283	- - CDS="CDS;ID=CDS_CG32555:12_920;Name=RhoGAPp190-cds;Parent=FBtr0074482,FBtr0074483;parent_type=mRNA" - - - - -	20852	17,536,191 – 17,536,283	+	15	107	67.76	-1.44	0.31	0.578325
15134	dm3.chrX	17,539,036 – 17,539,140	- - - intron="intron;ID=intron_CG32555:7_CG32555:8;Name=RhoGAPp190-in;Parent=FBtr0074481,FBtr0074482,FBtr0074483;parent_type=mRNA" - - - -	20853	17,539,036 – 17,539,126	+	4	102	81.93	-1.89	0.74	0.832895
15134	dm3.chrX	17,539,036 – 17,539,140		20854	17,539,043 – 17,539,140	+	4	101	85.88	-2.03	0.77	0.857871
15135	dm3.chrX	17,546,015 – 17,546,093	- - - - - - - -	20855	17,546,015 – 17,546,093	+	4	78	93.38	-2.08	0.80	0.690664
15135	dm3.chrX	17,546,015 – 17,546,093	- - - - - - - -	20856	17,546,015 – 17,546,093	-	4	78	93.38	-1.40	0.89	0.550956
15136	dm3.chrX	17,549,799 – 17,549,919	- - CDS="CDS;ID=CDS_CG8211:1_900;Name=CG8211-cds;Parent=FBtr0074480;parent_type=mRNA" - - - - -	20857	17,549,799 – 17,549,919	+	13	120	73.47	-1.98	0.37	0.838687
15137	dm3.chrX	17,551,341 – 17,551,404	- - - - - - - -	20858	17,551,341 – 17,551,404	+	6	80	53.75	-1.52	0.28	0.737305
15138	dm3.chrX	17,553,969 – 17,554,084	- - - intron="intron;ID=intron_CG5870:1_CG5870:2;Name=beta-Spec-in;Parent=FBtr0074454;parent_type=mRNA" - - - -	20859	17,553,969 – 17,554,084	+	6	119	76.14	-1.66	0.52	0.721074
15139	dm3.chrX	17,554,171 – 17,554,261	- - - intron="intron;ID=intron_CG5870:1_CG5870:2;Name=beta-Spec-in;Parent=FBtr0074454;parent_type=mRNA" - - - -	20860	17,554,171 – 17,554,261	+	5	94	92.99	-0.97	0.95	0.541483
15140	dm3.chrX	17,556,517 – 17,556,623	- - CDS="CDS;ID=CDS_CG5870:2_906;Name=beta-Spec-cds;Parent=FBtr0074454;parent_type=mRNA" - - - - -	20861	17,556,517 – 17,556,623	+	15	108	80.53	-1.53	0.53	0.640879
15141	dm3.chrX	17,561,834 – 17,561,930	- - - intron="intron;ID=intron_CG5870:4_CG5870:5;Name=beta-Spec-in;Parent=FBtr0074454;parent_type=mRNA" - - - -	20862	17,561,834 – 17,561,930	-	3	107	72.56	-1.95	0.63	0.905214
15142	dm3.chrX	17,564,628 – 17,564,721	- - - - - - - -	20863	17,564,628 – 17,564,721	+	5	93	76.86	-1.58	0.72	0.868828
15143	dm3.chrX	17,573,386 – 17,573,482	- - - intron="intron;ID=intron_CG32556:10_CG32556:6;Name=CG32556-in;Parent=FBtr0074478;parent_type=mRNA" - - - -	20864	17,573,386 – 17,573,482	+	5	103	90.28	-1.50	0.83	0.509509
15144	dm3.chrX	17,584,836 – 17,584,886	- - - intron="intron;ID=intron_CG32556:2_CG32556:3;Name=CG32556-in;Parent=FBtr0074477;parent_type=mRNA" - - - -	20865	17,584,836 – 17,584,886	-	5	51	94.44	-2.39	0.76	0.747283
15145	dm3.chrX	17,586,007 – 17,586,105	- - - intron="intron;ID=intron_CG32556:2_CG32556:3;Name=CG32556-in;Parent=FBtr0074477;parent_type=mRNA" - - - -	20866	17,586,007 – 17,586,105	+	5	120	75.00	-1.54	0.70	0.881080
15145	dm3.chrX	17,586,007 – 17,586,105		20867	17,586,007 – 17,586,105	-	5	120	75.00	-1.72	0.74	0.950920
15146	dm3.chrX	17,593,399 – 17,593,511	- - - - - - - -	20868	17,593,399 – 17,593,511	+	5	118	95.80	-2.09	0.91	0.920992
15146	dm3.chrX	17,593,399 – 17,593,511	- - - - - - - -	20869	17,593,399 – 17,593,511	-	5	118	95.80	-1.60	0.89	0.624807
15147	dm3.chrX	17,599,659 – 17,599,768	- - - - - - - -	20870	17,599,659 – 17,599,768	-	6	118	68.78	-1.82	0.50	0.968339
15148	dm3.chrX	17,604,012 – 17,604,205	- - - - - - - -	20871	17,604,012 – 17,604,125	-	5	120	79.08	-2.14	0.70	0.960271
				20872	17,604,045 – 17,604,165	+	5	120	86.22	-3.50	0.72	0.996284
				20873	17,604,045 – 17,604,165	-	5	120	86.22	-3.66	0.65	0.995687
				20874	17,604,085 – 17,604,205	+	5	120	90.28	-2.52	0.84	0.969312
				20875	17,604,085 – 17,604,205	-	5	120	90.28	-2.39	0.82	0.942049
15149	dm3.chrX	17,605,607 – 17,605,723	- - - intron="intron;ID=intron_FBgn0261570:1_FBgn0261570:2;Name=CG42684-in;Parent=FBtr0302834,FBtr0302835,FBtr0302837;parent_type=mRNA" - - - -	20876	17,605,607 – 17,605,723	+	5	117	87.93	-2.59	0.68	0.899512
15149	dm3.chrX	17,605,607 – 17,605,723		20877	17,605,607 – 17,605,723	-	5	117	87.93	-2.56	0.66	0.860384
15150	dm3.chrX	17,608,500 – 17,608,565	- - - intron="intron;ID=intron_FBgn0261570:1_FBgn0261570:2;Name=CG42684-in;Parent=FBtr0302834,FBtr0302835,FBtr0302837;parent_type=mRNA" - - - -	20878	17,608,500 – 17,608,565	-	6	66	81.12	-1.54	0.68	0.726518
15151	dm3.chrX	17,618,351 – 17,618,409	- - - intron="intron;ID=intron_FBgn0261570:5_FBgn0261570:6;Name=CG42684-in;Parent=FBtr0302836;parent_type=mRNA" - - - -	20879	17,618,351 – 17,618,409	+	7	62	82.64	-1.28	0.75	0.702135
15151	dm3.chrX	17,618,351 – 17,618,409		20880	17,618,351 – 17,618,409	-	7	62	82.64	-1.86	0.75	0.943749
15152	dm3.chrX	17,623,244 – 17,623,361	- - - intron="intron;ID=intron_FBgn0261570:5_FBgn0261570:6;Name=CG42684-in;Parent=FBtr0302836;parent_type=mRNA" - - - -	20881	17,623,244 – 17,623,361	+	5	120	86.82	-2.42	0.68	0.869858
15153	dm3.chrX	17,623,575 – 17,623,673	- - - intron="intron;ID=intron_FBgn0261570:5_FBgn0261570:6;Name=CG42684-in;Parent=FBtr0302836;parent_type=mRNA" - - - -	20882	17,623,575 – 17,623,673	-	4	107	76.49	-1.58	0.65	0.720566
15154	dm3.chrX	17,627,706 – 17,627,806	- - - intron="intron;ID=intron_FBgn0261570:5_FBgn0261570:6;Name=CG42684-in;Parent=FBtr0302836;parent_type=mRNA" - - - -	20883	17,627,706 – 17,627,806	+	5	108	73.77	-1.36	0.65	0.841727
15155	dm3.chrX	17,629,819 – 17,629,915	- - - intron="intron;ID=intron_FBgn0261570:6_FBgn0261570:7;Name=CG42684-in;Parent=FBtr0302836;parent_type=mRNA" - - - -	20884	17,629,819 – 17,629,915	-	4	96	86.24	-2.16	0.84	0.954150
15156	dm3.chrX	17,632,087 – 17,632,204	- - - intron="intron;ID=intron_FBgn0261570:7_FBgn0261570:9;Name=CG42684-in;Parent=FBtr0302835,FBtr0302836,FBtr0302837;parent_type=mRNA" - - - -	20885	17,632,087 – 17,632,204	+	4	126	73.35	-1.45	0.62	0.741824
15157	dm3.chrX	17,633,934 – 17,634,041	- - CDS="CDS;ID=CDS_FBgn0261570:8_955;Name=CG42684-cds;Parent=FBtr0302833;parent_type=mRNA" intron="intron;ID=intron_FBgn0261570:7_FBgn0261570:9;Name=CG42684-in;Parent=FBtr0302835,FBtr0302836,FBtr0302837;parent_type=mRNA" - - - -	20886	17,633,934 – 17,634,041	-	8	120	74.79	-1.27	0.57	0.529529
15158	dm3.chrX	17,637,665 – 17,637,771	- - - intron="intron;ID=intron_FBgn0261570:8_FBgn0261570:9;Name=CG42684-in;Parent=FBtr0302833;parent_type=mRNA" - - - -	20887	17,637,665 – 17,637,771	-	3	106	83.16	-1.96	0.81	0.877867
15159	dm3.chrX	17,638,302 – 17,638,357	- - - intron="intron;ID=intron_FBgn0261570:8_FBgn0261570:9;Name=CG42684-in;Parent=FBtr0302833;parent_type=mRNA" - - - -	20888	17,638,302 – 17,638,357	+	6	55	80.97	-1.57	0.69	0.804702
15160	dm3.chrX	17,639,923 – 17,640,013	- - - intron="intron;ID=intron_FBgn0261570:8_FBgn0261570:9;Name=CG42684-in;Parent=FBtr0302833;parent_type=mRNA" - - - -	20889	17,639,923 – 17,640,013	-	5	91	81.09	-2.41	0.63	0.951421
15161	dm3.chrX	17,643,976 – 17,644,069	- - CDS="CDS;ID=CDS_FBgn0261570:11_958;Name=CG42684-cds;Parent=FBtr0302837;parent_type=mRNA" - - - - -	20890	17,643,976 – 17,644,069	-	11	97	75.87	-1.60	0.44	0.676557
15162	dm3.chrX	17,648,092 – 17,648,188	- - - - - - - -	20891	17,648,092 – 17,648,188	+	11	115	88.82	-2.22	0.76	0.906399
15163	dm3.chrX	17,651,671 – 17,651,770	- - - - - - - -	20892	17,651,671 – 17,651,770	+	7	100	74.55	-1.14	0.63	0.773203
15164	dm3.chrX	17,655,116 – 17,655,201	- - - - - - - -	20893	17,655,116 – 17,655,201	+	11	86	77.57	-1.56	0.56	0.820680
15165	dm3.chrX	17,669,044 – 17,669,135	- - - intron="intron;ID=intron_CG6269:1_CG6269:2;Name=unc-4-in;Parent=FBtr0074460;parent_type=mRNA" - - - -	20894	17,669,044 – 17,669,135	+	6	106	60.83	-1.05	0.44	0.824370
15166	dm3.chrX	17,675,932 – 17,675,998	- - - - - - - -	20895	17,675,932 – 17,675,998	-	4	76	67.61	-1.38	0.61	0.887085
15167	dm3.chrX	17,700,310 – 17,700,424	- - - intron="intron;ID=intron_CG6352:1_CG6352:2;Name=OdsH-in;Parent=FBtr0074461;parent_type=mRNA" - - - -	20896	17,700,310 – 17,700,424	+	9	120	95.29	-1.47	0.88	0.527429
15168	dm3.chrX	17,709,581 – 17,709,651	- - - - - - - -	20897	17,709,581 – 17,709,651	-	8	72	75.70	-0.84	0.67	0.727953
15169	dm3.chrX	17,724,638 – 17,724,722	- - - - - - - -	20898	17,724,638 – 17,724,722	-	3	84	89.68	-2.52	0.81	0.942164
15170	dm3.chrX	17,725,638 – 17,725,730	- - - intron="intron;ID=intron_CG6398:1_CG6398:2;Name=CG6398-in;Parent=FBtr0074462;parent_type=mRNA" - - - -	20899	17,725,638 – 17,725,730	-	6	109	75.40	-1.86	0.48	0.672075
15171	dm3.chrX	17,726,739 – 17,726,792	- - - intron="intron;ID=intron_CG6398:1_CG6398:2;Name=CG6398-in;Parent=FBtr0074462;parent_type=mRNA" - - - -	20900	17,726,739 – 17,726,792	+	5	53	91.13	-2.98	0.73	0.965265
15172	dm3.chrX	17,730,383 – 17,730,437	- - - intron="intron;ID=intron_CG6398:1_CG6398:2;Name=CG6398-in;Parent=FBtr0074462;parent_type=mRNA" - - - -	20901	17,730,383 – 17,730,437	-	3	57	60.71	-1.67	0.39	0.623427
15173	dm3.chrX	17,733,600 – 17,733,717	- - - intron="intron;ID=intron_CG6398:1_CG6398:2;Name=CG6398-in;Parent=FBtr0074462;parent_type=mRNA" - - - -	20902	17,733,600 – 17,733,717	-	4	120	73.73	-1.76	0.65	0.939150
15174	dm3.chrX	17,752,367 – 17,752,463	- - - - - - - -	20903	17,752,367 – 17,752,463	+	4	103	67.01	-1.41	0.46	0.532370
15174	dm3.chrX	17,752,367 – 17,752,463	- - - - - - - -	20904	17,752,367 – 17,752,463	-	4	103	67.01	-2.55	0.41	0.970259
15175	dm3.chrX	17,766,100 – 17,766,208	- - - intron="intron;ID=intron_FBgn0259168:9_FBgn0259168:8;Name=mnb-in;Parent=FBtr0300508,FBtr0300509,FBtr0300510,FBtr0299619;parent_type=mRNA" - - - -	20905	17,766,100 – 17,766,208	+	5	110	94.39	-2.27	0.78	0.730074
15175	dm3.chrX	17,766,100 – 17,766,208		20906	17,766,100 – 17,766,208	-	5	110	94.39	-2.01	0.93	0.941981
15176	dm3.chrX	17,771,154 – 17,771,252	- - - - - - - -	20907	17,771,154 – 17,771,252	-	3	102	89.87	-2.21	0.76	0.741791
15177	dm3.chrX	17,775,489 – 17,775,627	- - - intron="intron;ID=intron_FBgn0259168:13_FBgn0259168:12;Name=mnb-in;Parent=FBtr0300508,FBtr0300509,FBtr0299619;parent_type=mRNA" - - - -	20908	17,775,489 – 17,775,627	-	6	142	68.16	-1.52	0.42	0.812701
15178	dm3.chrX	17,797,374 – 17,797,484	- - - - - - - -	20909	17,797,374 – 17,797,484	+	6	115	73.51	-1.74	0.41	0.567782
15179	dm3.chrX	17,800,536 – 17,800,640	- - - intron="intron;ID=intron_FBgn0030883:2_FBgn0030883:1;Name=CG7772-in;Parent=FBtr0074540;parent_type=mRNA" - - - -	20910	17,800,536 – 17,800,640	+	4	118	75.73	-1.86	0.55	0.709933
15180	dm3.chrX	17,801,654 – 17,801,756	- - - - - - - -	20911	17,801,654 – 17,801,756	+	5	105	87.02	-1.93	0.82	0.890988
15180	dm3.chrX	17,801,654 – 17,801,756	- - - - - - - -	20912	17,801,654 – 17,801,756	-	5	105	87.02	-2.25	0.78	0.930651
15181	dm3.chrX	17,804,936 – 17,805,027	- - - - - - - -	20913	17,804,936 – 17,805,027	-	6	109	68.49	-0.97	0.52	0.568797
15182	dm3.chrX	17,805,794 – 17,805,876	- - - intron="intron;ID=intron_CG6847:1_CG6847:2;Name=CG6847-in;Parent=FBtr0074505;parent_type=mRNA" - - - -	20914	17,805,794 – 17,805,876	-	5	84	92.90	-1.24	0.91	0.560351
15183	dm3.chrX	17,809,528 – 17,809,625	- - - intron="intron;ID=intron_CG6847:1_CG6847:2;Name=CG6847-in;Parent=FBtr0074505;parent_type=mRNA" - - - -	20915	17,809,528 – 17,809,625	+	4	97	84.88	-1.21	0.83	0.506234
15184	dm3.chrX	17,827,737 – 17,827,839	- - - intron="intron;ID=intron_FBgn0003380:8_FBgn0003380:4;Name=Sh-in;Parent=FBtr0089660,FBtr0089658;parent_type=mRNA" - - - -	20916	17,827,737 – 17,827,839	+	5	112	68.88	-2.06	0.43	0.922444
15185	dm3.chrX	17,827,960 – 17,828,102	- - - intron="intron;ID=intron_FBgn0003380:8_FBgn0003380:4;Name=Sh-in;Parent=FBtr0089660,FBtr0089658;parent_type=mRNA" - - - -	20917	17,827,960 – 17,828,072	-	5	113	72.30	-1.42	0.54	0.771704
15185	dm3.chrX	17,827,960 – 17,828,102		20918	17,828,000 – 17,828,102	+	5	120	69.87	-1.69	0.45	0.670407
15186	dm3.chrX	17,835,071 – 17,835,194	- - CDS="CDS;ID=CDS_FBgn0003380:6_995;Name=Sh-cds;Parent=FBtr0089657;parent_type=mRNA" - - - - -	20919	17,835,071 – 17,835,184	-	13	116	82.96	-1.75	0.82	0.966544
15186	dm3.chrX	17,835,071 – 17,835,194		20920	17,835,077 – 17,835,194	-	13	120	87.03	-1.66	0.82	0.888137
15187	dm3.chrX	17,847,802 – 17,847,915	- - - intron="intron;ID=intron_FBgn0003380:17_FBgn0003380:16;Name=Sh-in;Parent=FBtr0089657,FBtr0089658,FBtr0089663;parent_type=mRNA" - - - -	20921	17,847,802 – 17,847,915	-	8	120	87.74	-1.99	0.68	0.602627
15188	dm3.chrX	17,864,147 – 17,864,289	- - - intron="intron;ID=intron_FBgn0003380:17_FBgn0003380:16;Name=Sh-in;Parent=FBtr0089657,FBtr0089658,FBtr0089663;parent_type=mRNA" - - - -	20922	17,864,147 – 17,864,265	-	6	120	78.25	-2.79	0.73	0.997356
15188	dm3.chrX	17,864,147 – 17,864,289		20923	17,864,187 – 17,864,289	-	6	110	74.76	-3.09	0.58	0.998530
15189	dm3.chrX	17,864,762 – 17,864,858	- - - intron="intron;ID=intron_FBgn0003380:17_FBgn0003380:16;Name=Sh-in;Parent=FBtr0089657,FBtr0089658,FBtr0089663;parent_type=mRNA" - - - -	20924	17,864,762 – 17,864,858	+	5	97	93.17	-1.01	0.98	0.722869
15190	dm3.chrX	17,869,022 – 17,869,120	- - - intron="intron;ID=intron_FBgn0003380:17_FBgn0003380:16;Name=Sh-in;Parent=FBtr0089657,FBtr0089658,FBtr0089663;parent_type=mRNA" - - - -	20925	17,869,022 – 17,869,120	+	5	113	65.78	-1.98	0.35	0.793977
15191	dm3.chrX	17,870,934 – 17,871,053	- - - intron="intron;ID=intron_FBgn0003380:18_FBgn0003380:17;Name=Sh-in;Parent=FBtr0089657,FBtr0089658;parent_type=mRNA" - - - -	20926	17,870,934 – 17,871,053	-	5	120	80.37	-1.71	0.70	0.835558
15192	dm3.chrX	17,875,359 – 17,875,453	- - - intron="intron;ID=intron_FBgn0003380:18_FBgn0003380:17;Name=Sh-in;Parent=FBtr0089657,FBtr0089658;parent_type=mRNA" - - - -	20927	17,875,359 – 17,875,453	-	8	118	79.13	-2.80	0.45	0.923532
15193	dm3.chrX	17,877,369 – 17,877,456	- - - intron="intron;ID=intron_FBgn0003380:18_FBgn0003380:17;Name=Sh-in;Parent=FBtr0089657,FBtr0089658;parent_type=mRNA" - - - -	20928	17,877,369 – 17,877,456	+	7	95	66.38	-1.75	0.39	0.917707
15194	dm3.chrX	17,878,857 – 17,878,971	- - - intron="intron;ID=intron_FBgn0003380:18_FBgn0003380:17;Name=Sh-in;Parent=FBtr0089657,FBtr0089658;parent_type=mRNA" - - - -	20929	17,878,857 – 17,878,971	+	3	117	79.27	-0.84	0.92	0.599796
15195	dm3.chrX	17,879,607 – 17,879,661	- - - intron="intron;ID=intron_FBgn0003380:18_FBgn0003380:17;Name=Sh-in;Parent=FBtr0089657,FBtr0089658;parent_type=mRNA" - - - -	20930	17,879,607 – 17,879,661	+	5	54	96.30	-2.11	0.99	0.980543
15195	dm3.chrX	17,879,607 – 17,879,661		20931	17,879,607 – 17,879,661	-	5	54	96.30	-1.88	0.96	0.938972
15196	dm3.chrX	17,882,981 – 17,883,096	- - - intron="intron;ID=intron_FBgn0003380:18_FBgn0003380:17;Name=Sh-in;Parent=FBtr0089657,FBtr0089658;parent_type=mRNA" - - - -	20932	17,882,981 – 17,883,096	+	4	115	84.37	-1.64	0.83	0.826207
15197	dm3.chrX	17,883,603 – 17,883,659	- - - intron="intron;ID=intron_FBgn0003380:18_FBgn0003380:17;Name=Sh-in;Parent=FBtr0089657,FBtr0089658;parent_type=mRNA" - - - -	20933	17,883,603 – 17,883,659	+	9	70	66.40	-1.43	0.57	0.984056
15198	dm3.chrX	17,890,475 – 17,890,570	- - - - - - - -	20934	17,890,475 – 17,890,570	-	5	95	69.16	-2.20	0.43	0.968088
15199	dm3.chrX	17,893,109 – 17,893,203	- - - - - - - -	20935	17,893,109 – 17,893,203	-	7	109	70.13	-2.13	0.38	0.904659
15200	dm3.chrX	17,896,985 – 17,897,041	- - - - - - - -	20936	17,896,985 – 17,897,041	+	4	56	86.01	-2.08	0.91	0.975594
15201	dm3.chrX	17,899,484 – 17,899,581	- - - - - - - -	20937	17,899,484 – 17,899,581	-	6	106	76.11	-1.25	0.60	0.606573
15202	dm3.chrX	17,906,487 – 17,906,591	- - - - - - - -	20938	17,906,487 – 17,906,591	+	6	115	59.12	-1.59	0.50	0.995379
15202	dm3.chrX	17,906,487 – 17,906,591	- - - - - - - -	20939	17,906,487 – 17,906,591	-	6	115	59.12	-1.08	0.44	0.918840
15203	dm3.chrX	17,909,275 – 17,909,357	- - - - - - - -	20940	17,909,275 – 17,909,357	+	6	83	83.48	-2.81	0.77	0.994226
15203	dm3.chrX	17,909,275 – 17,909,357	- - - - - - - -	20941	17,909,275 – 17,909,357	-	6	83	83.48	-2.32	0.68	0.947418
15204	dm3.chrX	17,912,603 – 17,912,690	- - - - - - - -	20942	17,912,603 – 17,912,690	+	5	87	85.06	-1.49	0.82	0.762097
15205	dm3.chrX	17,916,310 – 17,916,543	- - - - - - - -	20943	17,916,310 – 17,916,418	-	6	109	79.14	-1.84	0.59	0.846060
				20944	17,916,379 – 17,916,493	-	4	115	83.75	-1.15	0.87	0.625004
				20945	17,916,418 – 17,916,528	+	4	116	82.49	-1.76	0.86	0.929691
				20946	17,916,418 – 17,916,528	-	4	116	82.49	-2.65	0.73	0.978660
				20947	17,916,435 – 17,916,543	+	5	115	69.78	-1.83	0.58	0.968839
				20948	17,916,435 – 17,916,543	-	5	115	69.78	-2.67	0.56	0.997301
15206	dm3.chrX	17,924,406 – 17,924,496	- - - - - - - -	20949	17,924,406 – 17,924,496	+	6	101	76.76	-1.47	0.62	0.782668
15207	dm3.chrX	17,926,800 – 17,926,944	- - - - - - - -	20950	17,926,800 – 17,926,944	-	3	144	84.84	-1.66	0.81	0.665305
15208	dm3.chrX	17,928,379 – 17,928,472	- - - - - - - -	20951	17,928,379 – 17,928,472	+	3	119	82.07	-2.97	0.89	0.996577
15209	dm3.chrX	17,928,726 – 17,928,791	- - - - - - - -	20952	17,928,726 – 17,928,791	+	3	67	86.93	-2.05	0.71	0.553111
15210	dm3.chrX	17,932,778 – 17,932,861	- - - - - - - -	20953	17,932,778 – 17,932,861	+	5	100	48.39	-0.85	0.44	0.930867
15211	dm3.chrX	17,933,183 – 17,933,303	- - - - - - - -	20954	17,933,183 – 17,933,303	-	11	124	78.44	-1.02	0.70	0.732380
15212	dm3.chrX	17,935,260 – 17,935,340	- - - intron="intron;ID=intron_FBgn0003380:25_FBgn0003380:24;Name=Sh-in;Parent=FBtr0302902,FBtr0302903;parent_type=mRNA" - - - -	20955	17,935,260 – 17,935,340	-	5	80	89.94	-1.63	0.87	0.786464
15213	dm3.chrX	17,937,277 – 17,937,343	- - - intron="intron;ID=intron_FBgn0003380:25_FBgn0003380:24;Name=Sh-in;Parent=FBtr0302902,FBtr0302903;parent_type=mRNA" - - - -	20956	17,937,277 – 17,937,343	+	5	82	57.40	-0.86	0.42	0.523261
15214	dm3.chrX	17,937,578 – 17,937,675	- - - intron="intron;ID=intron_FBgn0003380:25_FBgn0003380:24;Name=Sh-in;Parent=FBtr0302902,FBtr0302903;parent_type=mRNA" - - - -	20957	17,937,578 – 17,937,675	+	5	120	85.93	-1.97	0.71	0.670100
15215	dm3.chrX	17,947,010 – 17,947,061	- - - - - - - -	20958	17,947,010 – 17,947,061	-	4	51	84.31	-2.15	0.61	0.597926
15216	dm3.chrX	17,978,820 – 17,978,925	- - - intron="intron;ID=intron_CG7536:8_CG7536:2;Name=CG7536-in;Parent=FBtr0074531;parent_type=mRNA" - - - -	20959	17,978,820 – 17,978,925	-	4	106	90.36	-2.06	0.79	0.769482
15217	dm3.chrX	17,986,955 – 17,987,059	- - - - - - - -	20960	17,986,955 – 17,987,059	-	5	119	67.88	-2.23	0.67	0.997752
15218	dm3.chrX	18,007,461 – 18,007,611	- - CDS="CDS;ID=CDS_CG7178:3_900;Name=wupA-cds;Parent=FBtr0074520,FBtr0074521,FBtr0074522,FBtr0074523,FBtr0074524,FBtr0074525,FBtr0074526;parent_type=mRNA" - - - - -	20961	18,007,461 – 18,007,611	-	10	172	83.57	-1.63	0.71	0.793750
15219	dm3.chrX	18,012,492 – 18,012,558	- - - - - - - -	20962	18,012,492 – 18,012,558	+	4	70	88.94	-3.04	0.72	0.972180
15219	dm3.chrX	18,012,492 – 18,012,558	- - - - - - - -	20963	18,012,492 – 18,012,558	-	4	70	88.94	-2.72	0.59	0.687641
15220	dm3.chrX	18,013,103 – 18,013,202	- - - - - - - -	20964	18,013,103 – 18,013,202	-	4	99	90.91	-2.30	0.74	0.757302
15221	dm3.chrX	18,018,383 – 18,018,475	FBnoncoding="pre_miRNA;ID=FBtr0304365;Name=mir-969-RM;Parent=FBgn0262263;Alias=CR42970-RM;Dbxref=FlyBase_Annotation_IDs:CR42970-RM,miRBase:MI0005826" - - - - - - "mirBase_v16=dsi-mir-969\|9.1e-48"	20965	18,018,383 – 18,018,475	+	12	115	76.08	-2.59	0.86	0.998094
15222	dm3.chrX	18,022,248 – 18,022,349	FBnoncoding="pre_miRNA;ID=FBtr0304410;Name=mir-210-RM;Parent=FBgn0262433;Alias=CR42991-RM;Dbxref=FlyBase_Annotation_IDs:CR42991-RM,miRBase:MI0000376" - - - "Rfam_10.0=RF00679;mir-210;AANI01015309.1/4756-4850\|4.6e-34" "Noncode_2.0=n178690_u177788_NW_045813_miRNA_Anopheles\|3.5e-13" "unique_Noncode_2.0=u177788_miRNA_Anopheles\|3.1e-13" "mirBase_v16=dme-mir-210\|2.7e-51"	20966	18,022,248 – 18,022,349	+	15	115	79.95	-3.25	0.94	0.998677
15222	dm3.chrX	18,022,248 – 18,022,349		20967	18,022,248 – 18,022,349	-	15	115	79.95	-2.16	0.83	0.994956
15223	dm3.chrX	18,031,142 – 18,031,261	- - - intron="intron;ID=intron_FBgn0017418:11_FBgn0017418:9;Name=ari-1-in;Parent=FBtr0089508;parent_type=mRNA" - - - -	20968	18,031,142 – 18,031,239	+	5	98	79.03	-1.85	0.59	0.725527
				20969	18,031,171 – 18,031,261	+	5	99	84.84	-2.39	0.65	0.862894
				20970	18,031,171 – 18,031,261	-	5	99	84.84	-1.97	0.68	0.667127
15224	dm3.chrX	18,031,612 – 18,031,743	- - - - - - - -	20971	18,031,612 – 18,031,674	+	5	66	89.20	-1.42	0.98	0.932496
15224	dm3.chrX	18,031,612 – 18,031,743	- - - - - - - -	20972	18,031,674 – 18,031,743	-	6	74	75.09	-2.60	0.67	0.997005
15225	dm3.chrX	18,034,116 – 18,034,216	- - - - - - - -	20973	18,034,116 – 18,034,216	-	3	100	78.17	-1.56	0.72	0.564607
15226	dm3.chrX	18,037,954 – 18,038,071	- - - - - - - -	20974	18,037,954 – 18,038,071	+	6	120	88.53	-1.92	0.74	0.701420
15227	dm3.chrX	18,043,125 – 18,043,274	- - - - - - - -	20975	18,043,125 – 18,043,220	+	5	110	90.07	-2.08	0.74	0.628266
15227	dm3.chrX	18,043,125 – 18,043,274	- - - - - - - -	20976	18,043,183 – 18,043,274	-	3	91	80.69	-1.17	0.88	0.683088
15228	dm3.chrX	18,054,174 – 18,054,274	- - - intron="intron;ID=intron_CG5744:1_CG5744:10;Name=Frq1-in;Parent=FBtr0100239;parent_type=mRNA" - - - -	20977	18,054,174 – 18,054,274	+	9	116	68.21	-1.21	0.43	0.625604
15229	dm3.chrX	18,055,058 – 18,055,149	- - - - - - - -	20978	18,055,058 – 18,055,149	+	7	110	69.10	-1.81	0.56	0.985195
15229	dm3.chrX	18,055,058 – 18,055,149	- - - - - - - -	20979	18,055,058 – 18,055,149	-	7	110	69.10	-2.44	0.60	0.998565
15230	dm3.chrX	18,065,815 – 18,065,869	- - - - - - - -	20980	18,065,815 – 18,065,869	+	3	54	98.77	-2.09	1.00	0.976156
15231	dm3.chrX	18,069,816 – 18,069,913	- - - - - - - -	20981	18,069,816 – 18,069,913	+	11	113	71.28	-2.23	0.43	0.952862
15231	dm3.chrX	18,069,816 – 18,069,913	- - - - - - - -	20982	18,069,816 – 18,069,913	-	11	113	71.28	-2.38	0.53	0.993949
15232	dm3.chrX	18,075,419 – 18,075,545	- - - - - - - -	20983	18,075,419 – 18,075,519	-	10	102	77.46	-2.01	0.64	0.976762
				20984	18,075,433 – 18,075,545	+	6	112	82.98	-1.13	0.82	0.525605
				20985	18,075,433 – 18,075,545	-	6	112	82.98	-1.25	0.80	0.561398
15233	dm3.chrX	18,084,168 – 18,084,271	- - - intron="intron;ID=intron_FBgn0083228:4_FBgn0083228:5;Name=Frq2-in;Parent=FBtr0301627;parent_type=mRNA" - - - -	20986	18,084,168 – 18,084,271	+	5	124	64.91	-2.40	0.44	0.992731
15234	dm3.chrX	18,084,447 – 18,084,555	- - - intron="intron;ID=intron_FBgn0083228:4_FBgn0083228:5;Name=Frq2-in;Parent=FBtr0301627;parent_type=mRNA" - - - -	20987	18,084,447 – 18,084,555	-	5	112	84.12	-1.99	0.61	0.560485
15235	dm3.chrX	18,085,724 – 18,085,844	- - - intron="intron;ID=intron_FBgn0083228:4_FBgn0083228:5;Name=Frq2-in;Parent=FBtr0301627;parent_type=mRNA" - - - -	20988	18,085,724 – 18,085,844	+	5	120	91.42	-2.57	0.60	0.500000
15235	dm3.chrX	18,085,724 – 18,085,844		20989	18,085,724 – 18,085,844	-	5	120	91.42	-2.34	0.72	0.732489
15236	dm3.chrX	18,086,797 – 18,086,963	- - - intron="intron;ID=intron_FBgn0083228:5_FBgn0083228:6;Name=Frq2-in;Parent=FBtr0074546,FBtr0301627,FBtr0301628;parent_type=mRNA" - - - -	20990	18,086,797 – 18,086,963	+	5	167	71.69	-1.15	0.53	0.572309
15237	dm3.chrX	18,087,678 – 18,087,796	- - - intron="intron;ID=intron_FBgn0083228:5_FBgn0083228:6;Name=Frq2-in;Parent=FBtr0074546,FBtr0301627,FBtr0301628;parent_type=mRNA" - - - -	20991	18,087,678 – 18,087,796	+	8	130	73.49	-1.95	0.41	0.738254
15238	dm3.chrX	18,089,746 – 18,089,859	- - - intron="intron;ID=intron_FBgn0083228:5_FBgn0083228:6;Name=Frq2-in;Parent=FBtr0074546,FBtr0301627,FBtr0301628;parent_type=mRNA" - - - -	20992	18,089,746 – 18,089,859	+	6	116	69.46	-1.22	0.53	0.888422
15239	dm3.chrX	18,092,451 – 18,092,533	- - - intron="intron;ID=intron_FBgn0083228:5_FBgn0083228:6;Name=Frq2-in;Parent=FBtr0074546,FBtr0301627,FBtr0301628;parent_type=mRNA" - - - -	20993	18,092,451 – 18,092,533	+	6	85	72.37	-1.03	0.79	0.938718
15240	dm3.chrX	18,100,270 – 18,100,405	- - - - - - - -	20994	18,100,270 – 18,100,373	-	6	114	70.17	-0.77	0.56	0.512075
15240	dm3.chrX	18,100,270 – 18,100,405	- - - - - - - -	20995	18,100,299 – 18,100,405	-	7	115	62.72	-1.62	0.34	0.745288
15241	dm3.chrX	18,105,918 – 18,106,030	- - - - - - - -	20996	18,105,918 – 18,106,030	-	5	112	97.77	-1.75	0.89	0.659993
15242	dm3.chrX	18,113,393 – 18,113,500	- - - intron="intron;ID=intron_FBgn0053639:6_FBgn0053639:5;Name=CG33639-in;Parent=FBtr0091616,FBtr0302908,FBtr0302909;parent_type=mRNA" - - - -	20997	18,113,393 – 18,113,500	-	4	118	69.59	-1.41	0.54	0.716193
15243	dm3.chrX	18,120,158 – 18,120,259	- - - - - - - -	20998	18,120,158 – 18,120,259	-	8	109	61.61	-1.86	0.34	0.969951
15244	dm3.chrX	18,120,905 – 18,120,962	- - - - - - - -	20999	18,120,905 – 18,120,962	+	5	63	88.55	-1.80	0.80	0.730194
15244	dm3.chrX	18,120,905 – 18,120,962	- - - - - - - -	21000	18,120,905 – 18,120,962	-	5	63	88.55	-2.29	0.89	0.977497
15245	dm3.chrX	18,122,855 – 18,122,959	- - - - - - - -	21001	18,122,855 – 18,122,959	+	5	104	91.25	-1.84	0.81	0.699006
15246	dm3.chrX	18,123,790 – 18,123,885	- - - - - - - -	21002	18,123,790 – 18,123,885	+	4	107	79.84	-2.04	0.67	0.859279
15247	dm3.chrX	18,124,039 – 18,124,194	- - - - - - - -	21003	18,124,039 – 18,124,136	+	6	113	73.12	-2.66	0.41	0.962506
15247	dm3.chrX	18,124,039 – 18,124,194	- - - - - - - -	21004	18,124,097 – 18,124,194	-	7	112	71.42	-1.59	0.44	0.646058
15248	dm3.chrX	18,124,357 – 18,124,461	- - - - - - - -	21005	18,124,357 – 18,124,461	+	3	104	85.62	-1.41	0.86	0.659066
15249	dm3.chrX	18,126,032 – 18,126,145	- - - - - - - -	21006	18,126,032 – 18,126,145	-	5	113	79.64	-1.94	0.69	0.932680
15250	dm3.chrX	18,126,413 – 18,126,526	- - - - - - - -	21007	18,126,413 – 18,126,526	+	5	120	94.82	-1.37	0.96	0.810839
15251	dm3.chrX	18,131,028 – 18,131,133	- - - - - - - -	21008	18,131,028 – 18,131,133	+	8	109	88.91	-1.90	0.74	0.738544
15252	dm3.chrX	18,132,500 – 18,132,650	- - - - - - - -	21009	18,132,500 – 18,132,614	+	5	115	82.59	-2.28	0.65	0.918099
				21010	18,132,500 – 18,132,614	-	5	115	82.59	-2.62	0.74	0.987949
				21011	18,132,540 – 18,132,650	-	6	115	72.56	-2.13	0.44	0.941852
15253	dm3.chrX	18,133,677 – 18,133,781	- - - - - - - -	21012	18,133,677 – 18,133,781	+	4	104	80.49	-2.27	0.76	0.973372
15253	dm3.chrX	18,133,677 – 18,133,781	- - - - - - - -	21013	18,133,677 – 18,133,781	-	4	104	80.49	-2.72	0.84	0.995337
15254	dm3.chrX	18,133,962 – 18,134,132	- - - - - - - -	21014	18,133,962 – 18,134,061	+	5	100	89.13	-1.76	0.76	0.532034
				21015	18,133,962 – 18,134,061	-	5	100	89.13	-1.91	0.86	0.903559
				21016	18,134,025 – 18,134,132	+	6	116	70.23	-1.86	0.51	0.975612
				21017	18,134,025 – 18,134,132	-	6	116	70.23	-1.70	0.36	0.555863
15255	dm3.chrX	18,136,331 – 18,136,427	- - - intron="intron;ID=intron_FBgn0030904:3_FBgn0030904:2;Name=upd2-in;Parent=FBtr0300182;parent_type=mRNA" - - - -	21018	18,136,331 – 18,136,427	-	3	101	86.90	-1.96	0.94	0.967651
15256	dm3.chrX	18,139,913 – 18,140,012	- - - - - - - -	21019	18,139,913 – 18,140,012	+	3	100	73.45	-1.48	0.72	0.761594
15257	dm3.chrX	18,140,147 – 18,140,218	- - - - - - - -	21020	18,140,147 – 18,140,218	-	4	83	77.06	-1.09	0.81	0.685096
15258	dm3.chrX	18,148,660 – 18,148,721	- - - - - - - -	21021	18,148,660 – 18,148,721	+	6	63	79.82	-2.11	0.67	0.957767
15259	dm3.chrX	18,152,838 – 18,152,942	- - - - - - - -	21022	18,152,838 – 18,152,942	+	6	116	63.91	-4.58	0.40	0.999959
15259	dm3.chrX	18,152,838 – 18,152,942	- - - - - - - -	21023	18,152,838 – 18,152,942	-	6	116	63.91	-4.01	0.52	0.999966
15260	dm3.chrX	18,169,311 – 18,169,406	- - - - - - - -	21024	18,169,311 – 18,169,406	+	6	107	71.21	-1.12	0.55	0.657245
15260	dm3.chrX	18,169,311 – 18,169,406	- - - - - - - -	21025	18,169,311 – 18,169,406	-	6	107	71.21	-0.54	0.73	0.655351
15261	dm3.chrX	18,170,387 – 18,170,502	- - - - - - - -	21026	18,170,387 – 18,170,502	+	5	120	79.29	-1.35	0.68	0.592499
15262	dm3.chrX	18,175,524 – 18,175,651	- - - intron="intron;ID=intron_FBgn0053542:3_FBgn0053542:4;Name=upd3-in;Parent=FBtr0113465;parent_type=mRNA" - - - -	21027	18,175,524 – 18,175,641	-	5	117	69.32	-0.69	0.69	0.613707
15262	dm3.chrX	18,175,524 – 18,175,651		21028	18,175,547 – 18,175,651	-	5	117	67.83	-1.51	0.64	0.946111
15263	dm3.chrX	18,186,158 – 18,186,258	- - - - - - - -	21029	18,186,158 – 18,186,258	-	6	110	70.40	-1.06	0.54	0.701609
15264	dm3.chrX	18,189,491 – 18,189,599	- - - - - - - -	21030	18,189,491 – 18,189,599	-	4	119	86.18	-2.32	0.76	0.919495
15265	dm3.chrX	18,193,435 – 18,193,550	- - - - - - - -	21031	18,193,435 – 18,193,550	+	10	120	69.92	-0.12	0.63	0.524896
15266	dm3.chrX	18,195,074 – 18,195,166	- - - - - - - -	21032	18,195,074 – 18,195,166	-	11	97	68.52	-1.26	0.65	0.990094
15267	dm3.chrX	18,201,148 – 18,201,241	- - - - - - - -	21033	18,201,148 – 18,201,241	-	8	100	73.35	-1.08	0.59	0.739195
15268	dm3.chrX	18,203,111 – 18,203,209	- - - - - - - -	21034	18,203,111 – 18,203,209	-	12	111	73.01	-0.69	0.64	0.660722
15269	dm3.chrX	18,206,508 – 18,206,610	- - - - - - - -	21035	18,206,508 – 18,206,610	+	5	123	60.50	-1.23	0.38	0.562397
15270	dm3.chrX	18,206,665 – 18,206,782	- - - - - - - -	21036	18,206,665 – 18,206,782	-	4	117	94.87	-1.49	0.90	0.618923
15271	dm3.chrX	18,207,586 – 18,207,658	- - - - - - - -	21037	18,207,586 – 18,207,658	+	3	76	85.71	-2.73	0.83	0.985371
15272	dm3.chrX	18,207,763 – 18,207,904	- - - - - - - -	21038	18,207,763 – 18,207,871	+	4	108	88.87	-1.76	0.77	0.542490
15272	dm3.chrX	18,207,763 – 18,207,904	- - - - - - - -	21039	18,207,803 – 18,207,904	+	4	109	73.37	-1.46	0.66	0.842486
15273	dm3.chrX	18,216,101 – 18,216,218	- - - - - - - -	21040	18,216,101 – 18,216,218	+	3	130	69.23	-2.17	0.41	0.584566
15274	dm3.chrX	18,224,284 – 18,224,384	- - - intron="intron;ID=intron_FBgn0030913:4_FBgn0030913:3;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21041	18,224,284 – 18,224,384	+	5	100	88.90	-2.47	0.76	0.937096
15275	dm3.chrX	18,225,690 – 18,225,810	- - - intron="intron;ID=intron_FBgn0030913:5_FBgn0030913:4;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21042	18,225,690 – 18,225,810	+	8	127	86.06	-1.47	0.75	0.572274
15276	dm3.chrX	18,231,434 – 18,231,531	- - - intron="intron;ID=intron_FBgn0030913:5_FBgn0030913:4;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21043	18,231,434 – 18,231,531	-	4	120	59.34	-1.01	0.66	0.952264
15277	dm3.chrX	18,232,058 – 18,232,124	- - - intron="intron;ID=intron_FBgn0030913:5_FBgn0030913:4;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21044	18,232,058 – 18,232,124	-	6	67	76.81	-1.71	0.60	0.891481
15278	dm3.chrX	18,234,018 – 18,234,109	- - - intron="intron;ID=intron_FBgn0030913:5_FBgn0030913:4;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21045	18,234,018 – 18,234,109	+	6	95	81.52	-1.50	0.71	0.577049
15279	dm3.chrX	18,236,518 – 18,236,578	- - - intron="intron;ID=intron_FBgn0030913:5_FBgn0030913:4;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21046	18,236,518 – 18,236,578	-	7	60	68.43	-0.64	0.52	0.515895
15280	dm3.chrX	18,239,319 – 18,239,386	- - - intron="intron;ID=intron_FBgn0030913:5_FBgn0030913:4;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21047	18,239,319 – 18,239,386	+	10	77	75.37	-1.59	0.67	0.977960
15281	dm3.chrX	18,245,181 – 18,245,273	- - - intron="intron;ID=intron_FBgn0030913:5_FBgn0030913:4;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21048	18,245,181 – 18,245,273	+	5	116	67.65	-1.15	0.47	0.568636
15282	dm3.chrX	18,247,094 – 18,247,184	- - - intron="intron;ID=intron_FBgn0030913:5_FBgn0030913:4;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21049	18,247,094 – 18,247,184	+	5	91	77.46	-2.14	0.57	0.873563
15282	dm3.chrX	18,247,094 – 18,247,184		21050	18,247,094 – 18,247,184	-	5	91	77.46	-2.26	0.62	0.951112
15283	dm3.chrX	18,249,474 – 18,249,579	- - - intron="intron;ID=intron_FBgn0030913:6_FBgn0030913:5;Name=CG6123-in;Parent=FBtr0074578;parent_type=mRNA" - - - -	21051	18,249,474 – 18,249,579	+	5	120	79.57	-1.70	0.63	0.581453
15284	dm3.chrX	18,264,535 – 18,264,625	- - - intron="intron;ID=intron_FBgn0014467:2_FBgn0014467:7;Name=CrebB-17A-in;Parent=FBtr0300206;parent_type=mRNA" - - - -	21052	18,264,535 – 18,264,625	+	5	94	69.80	-1.60	0.42	0.667494
15285	dm3.chrX	18,269,474 – 18,269,617	- - - intron="intron;ID=intron_FBgn0014467:11_FBgn0014467:12;Name=CrebB-17A-in;Parent=FBtr0074554,FBtr0074555,FBtr0074556,FBtr0112878;parent_type=mRNA" - - - -	21053	18,269,474 – 18,269,580	+	5	120	78.61	-2.21	0.59	0.905495
				21054	18,269,474 – 18,269,580	-	5	120	78.61	-2.48	0.58	0.954703
				21055	18,269,513 – 18,269,617	+	4	116	79.55	-3.73	0.77	0.999060
				21056	18,269,513 – 18,269,617	-	4	116	79.55	-3.07	0.70	0.995300
15286	dm3.chrX	18,273,873 – 18,273,975	- - - - - - - -	21057	18,273,873 – 18,273,975	-	5	111	50.87	-1.83	0.21	0.802385
15287	dm3.chrX	18,280,227 – 18,280,321	- - - - - - - -	21058	18,280,227 – 18,280,321	+	8	114	56.60	-1.59	0.30	0.886485
15288	dm3.chrX	18,288,992 – 18,289,166	- - - intron="intron;ID=intron_CG32549:9_CG32549:3;Name=CG32549-in;Parent=FBtr0074571;parent_type=mRNA" - - - -	21059	18,288,992 – 18,289,088	-	3	96	77.27	-2.31	0.77	0.969410
15288	dm3.chrX	18,288,992 – 18,289,166		21060	18,289,048 – 18,289,166	-	4	120	68.55	-1.31	0.56	0.737892
15289	dm3.chrX	18,290,290 – 18,290,385	- - - intron="intron;ID=intron_CG32549:9_CG32549:3;Name=CG32549-in;Parent=FBtr0074571;parent_type=mRNA" - - - -	21061	18,290,290 – 18,290,385	+	6	116	72.83	-1.41	0.56	0.716777
15290	dm3.chrX	18,294,925 – 18,295,027	- - - intron="intron;ID=intron_CG32549:9_CG32549:3;Name=CG32549-in;Parent=FBtr0074571;parent_type=mRNA" - - - -	21062	18,294,925 – 18,295,027	+	6	107	66.80	-1.90	0.33	0.782016
15291	dm3.chrX	18,297,147 – 18,297,253	- - - intron="intron;ID=intron_CG32549:9_CG32549:3;Name=CG32549-in;Parent=FBtr0074571;parent_type=mRNA" - - - -	21063	18,297,147 – 18,297,253	-	5	120	74.28	-1.19	0.61	0.500000
15292	dm3.chrX	18,297,478 – 18,297,643	- - - intron="intron;ID=intron_CG32549:9_CG32549:3;Name=CG32549-in;Parent=FBtr0074571;parent_type=mRNA" - - - -	21064	18,297,478 – 18,297,568	+	3	93	89.86	-1.12	0.95	0.693591
15292	dm3.chrX	18,297,478 – 18,297,643		21065	18,297,532 – 18,297,643	-	3	111	91.59	-2.09	0.76	0.563644
15293	dm3.chrX	18,298,931 – 18,298,987	- - - - - - - -	21066	18,298,931 – 18,298,987	-	5	56	78.75	-1.03	0.81	0.738416
15294	dm3.chrX	18,315,008 – 18,315,174	- - - - - - - -	21067	18,315,008 – 18,315,114	-	6	115	71.35	-0.82	0.65	0.742584
15294	dm3.chrX	18,315,008 – 18,315,174	- - - - - - - -	21068	18,315,081 – 18,315,174	+	3	107	66.88	-2.11	0.40	0.622474
15295	dm3.chrX	18,320,018 – 18,320,137	- - - intron="intron;ID=intron_FBgn0259223:3_FBgn0259223:5;Name=CG42323-in;Parent=FBtr0299776;parent_type=mRNA" - - - -	21069	18,320,018 – 18,320,137	-	6	124	77.36	-1.35	0.62	0.708897
15296	dm3.chrX	18,321,757 – 18,321,857	- - - - - - - -	21070	18,321,757 – 18,321,857	-	5	114	61.29	-0.66	0.49	0.528661
15297	dm3.chrX	18,323,304 – 18,323,401	- - - - - - - -	21071	18,323,304 – 18,323,401	-	3	97	86.62	-1.74	0.80	0.639642
15298	dm3.chrX	18,329,127 – 18,329,284	- - - - - - - -	21072	18,329,127 – 18,329,245	+	4	120	77.40	-1.48	0.77	0.816804
				21073	18,329,127 – 18,329,245	-	4	120	77.40	-1.56	0.73	0.786116
				21074	18,329,165 – 18,329,280	+	4	115	71.12	-1.15	0.75	0.847459
				21075	18,329,169 – 18,329,284	+	3	115	81.54	-1.75	0.85	0.892667
				21076	18,329,169 – 18,329,284	-	3	115	81.54	-1.50	0.81	0.662685
15299	dm3.chrX	18,329,461 – 18,329,560	- - - - - - - -	21077	18,329,461 – 18,329,560	+	5	120	69.60	-2.05	0.54	0.964213
15299	dm3.chrX	18,329,461 – 18,329,560	- - - - - - - -	21078	18,329,461 – 18,329,560	-	5	120	69.60	-1.65	0.55	0.881758
15300	dm3.chrX	18,330,388 – 18,330,500	- - CDS="CDS;ID=CDS_CG32548:2_935;Name=CG32548-cds;Parent=FBtr0074568,FBtr0074569;parent_type=mRNA" - - - - -	21079	18,330,388 – 18,330,500	-	11	114	68.17	-1.37	0.38	0.804680
15301	dm3.chrX	18,332,375 – 18,332,491	- - - - - - - -	21080	18,332,375 – 18,332,491	-	3	116	78.31	-1.68	0.83	0.895955
15302	dm3.chrX	18,332,515 – 18,332,614	- - - - - - - -	21081	18,332,515 – 18,332,614	-	3	108	85.09	-1.91	0.73	0.602295
15303	dm3.chrX	18,333,492 – 18,333,604	- - - - - - - -	21082	18,333,492 – 18,333,604	-	7	116	58.48	-1.49	0.29	0.746009
15304	dm3.chrX	18,338,588 – 18,338,687	- - CDS="CDS;ID=CDS_FBgn0052547:1_947;Name=CG32547-cds;Parent=FBtr0290002;parent_type=mRNA" - - - - -	21083	18,338,588 – 18,338,687	-	4	99	98.15	-1.06	0.97	0.554078
15305	dm3.chrX	18,340,843 – 18,340,941	- - - intron="intron;ID=intron_FBgn0052547:3_FBgn0052547:2;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21084	18,340,843 – 18,340,941	+	5	108	57.81	-0.72	0.48	0.641387
15306	dm3.chrX	18,347,696 – 18,347,801	- - - intron="intron;ID=intron_FBgn0052547:5_FBgn0052547:4;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21085	18,347,696 – 18,347,801	+	5	116	70.29	-1.39	0.50	0.690012
15307	dm3.chrX	18,349,053 – 18,349,148	- - - intron="intron;ID=intron_FBgn0052547:5_FBgn0052547:4;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21086	18,349,053 – 18,349,148	+	7	116	65.30	-0.83	0.47	0.665846
15307	dm3.chrX	18,349,053 – 18,349,148		21087	18,349,053 – 18,349,148	-	7	116	65.30	-0.75	0.62	0.936757
15308	dm3.chrX	18,354,322 – 18,354,423	- - - intron="intron;ID=intron_FBgn0052547:6_FBgn0052547:5;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21088	18,354,322 – 18,354,423	+	5	120	78.60	-1.94	0.76	0.962058
15309	dm3.chrX	18,354,500 – 18,354,592	- - - intron="intron;ID=intron_FBgn0052547:6_FBgn0052547:5;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21089	18,354,500 – 18,354,592	+	4	119	69.47	-2.24	0.38	0.623274
15310	dm3.chrX	18,356,734 – 18,356,830	- - - intron="intron;ID=intron_FBgn0052547:7_FBgn0052547:6;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21090	18,356,734 – 18,356,830	+	3	99	83.16	-1.72	0.73	0.500000
15311	dm3.chrX	18,357,077 – 18,357,175	- - - intron="intron;ID=intron_FBgn0052547:7_FBgn0052547:6;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21091	18,357,077 – 18,357,175	+	3	98	66.55	-1.96	0.45	0.659561
15311	dm3.chrX	18,357,077 – 18,357,175		21092	18,357,077 – 18,357,175	-	3	98	66.55	-1.92	0.53	0.865961
15312	dm3.chrX	18,357,828 – 18,357,944	- - - intron="intron;ID=intron_FBgn0052547:7_FBgn0052547:6;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21093	18,357,828 – 18,357,944	-	5	120	72.07	-1.35	0.50	0.516199
15313	dm3.chrX	18,367,446 – 18,367,536	- - - intron="intron;ID=intron_FBgn0052547:7_FBgn0052547:6;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21094	18,367,446 – 18,367,536	+	6	98	55.00	-1.50	0.28	0.717607
15313	dm3.chrX	18,367,446 – 18,367,536		21095	18,367,446 – 18,367,536	-	6	98	55.00	-1.90	0.36	0.988245
15314	dm3.chrX	18,371,504 – 18,371,647	- - - intron="intron;ID=intron_FBgn0052547:7_FBgn0052547:6;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21096	18,371,504 – 18,371,574	+	4	70	86.91	-1.80	0.83	0.834353
				21097	18,371,574 – 18,371,647	+	7	92	70.75	-0.93	0.65	0.777644
				21098	18,371,574 – 18,371,647	-	7	92	70.75	-0.90	0.74	0.880217
15315	dm3.chrX	18,372,776 – 18,372,869	- - - intron="intron;ID=intron_FBgn0052547:7_FBgn0052547:6;Name=CG32547-in;Parent=FBtr0290002;parent_type=mRNA" - - - -	21099	18,372,776 – 18,372,869	+	6	93	78.12	-1.66	0.56	0.787178
15315	dm3.chrX	18,372,776 – 18,372,869		21100	18,372,776 – 18,372,869	-	6	93	78.12	-1.34	0.62	0.715476
15316	dm3.chrX	18,375,792 – 18,375,891	- - CDS="CDS;ID=CDS_FBgn0030925:5_951;Name=CG6361-cds;Parent=FBtr0113000;parent_type=mRNA" - - - - -	21101	18,375,792 – 18,375,891	+	5	126	60.68	-1.07	0.41	0.570127
15317	dm3.chrX	18,376,718 – 18,376,813	- - - intron="intron;ID=intron_FBgn0030925:8_FBgn0030925:7;Name=CG6361-in;Parent=FBtr0074630,FBtr0113000;parent_type=mRNA" - - - -	21102	18,376,718 – 18,376,813	-	4	95	85.92	-1.37	0.83	0.577589
15318	dm3.chrX	18,402,813 – 18,402,912	- - - intron="intron;ID=intron_CG6461:1_CG6461:2;Name=CG6461-in;Parent=FBtr0074622;parent_type=mRNA" - - - -	21103	18,402,813 – 18,402,912	+	5	119	76.01	-2.45	0.48	0.888600
15319	dm3.chrX	18,403,420 – 18,403,550	- - - intron="intron;ID=intron_CG6461:1_CG6461:2;Name=CG6461-in;Parent=FBtr0074622;parent_type=mRNA" - - - -	21104	18,403,420 – 18,403,519	+	6	107	64.60	-2.32	0.27	0.844333
15319	dm3.chrX	18,403,420 – 18,403,550		21105	18,403,455 – 18,403,550	+	6	105	62.91	-1.36	0.39	0.745053
15320	dm3.chrX	18,405,110 – 18,405,227	- - - intron="intron;ID=intron_CG6461:1_CG6461:2;Name=CG6461-in;Parent=FBtr0074622;parent_type=mRNA" - - - -	21106	18,405,110 – 18,405,227	+	5	120	82.36	-2.07	0.53	0.512490
15320	dm3.chrX	18,405,110 – 18,405,227		21107	18,405,110 – 18,405,227	-	5	120	82.36	-2.57	0.51	0.843884
15321	dm3.chrX	18,414,574 – 18,414,692	- - - - - - - -	21108	18,414,574 – 18,414,692	+	4	123	68.09	-1.00	0.82	0.934648
15322	dm3.chrX	18,416,069 – 18,416,165	- - CDS="CDS;ID=CDS_CG6481:1_911;Name=CG6481-cds;Parent=FBtr0074620;parent_type=mRNA" - - - - -	21109	18,416,069 – 18,416,165	+	5	110	61.14	-0.98	0.46	0.618201
15322	dm3.chrX	18,416,069 – 18,416,165		21110	18,416,069 – 18,416,165	-	5	110	61.14	-0.62	0.52	0.541147
15323	dm3.chrX	18,419,218 – 18,419,295	- - - - - - - -	21111	18,419,218 – 18,419,295	+	6	83	58.71	-1.43	0.30	0.591058
15324	dm3.chrX	18,425,199 – 18,425,311	- - - - - - - -	21112	18,425,199 – 18,425,311	-	5	113	86.89	-1.48	0.81	0.605239
15325	dm3.chrX	18,431,864 – 18,431,971	- - - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" - - - -	21113	18,431,864 – 18,431,971	+	6	107	85.78	-2.55	0.54	0.779073
15326	dm3.chrX	18,433,146 – 18,433,227	- - - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" - - - -	21114	18,433,146 – 18,433,227	-	11	84	91.20	-1.96	0.89	0.940690
15327	dm3.chrX	18,435,442 – 18,435,550	- - - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" - - - -	21115	18,435,442 – 18,435,550	-	6	118	76.22	-1.79	0.56	0.853472
15328	dm3.chrX	18,437,241 – 18,437,343	- - - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" - - - -	21116	18,437,241 – 18,437,337	+	3	107	68.25	-2.10	0.52	0.910328
15328	dm3.chrX	18,437,241 – 18,437,343		21117	18,437,249 – 18,437,343	+	3	109	68.57	-2.27	0.49	0.901145
15329	dm3.chrX	18,442,522 – 18,442,594	- - - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" - - - -	21118	18,442,522 – 18,442,594	+	4	72	66.51	-1.22	0.56	0.823541
15329	dm3.chrX	18,442,522 – 18,442,594		21119	18,442,522 – 18,442,594	-	4	72	66.51	-1.17	0.59	0.854419
15330	dm3.chrX	18,443,471 – 18,443,576	- - - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" - - - -	21120	18,443,471 – 18,443,576	+	3	117	89.37	-2.71	0.82	0.971942
15330	dm3.chrX	18,443,471 – 18,443,576		21121	18,443,471 – 18,443,576	-	3	117	89.37	-1.73	0.86	0.765995
15331	dm3.chrX	18,443,937 – 18,444,046	- - - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" - - - -	21122	18,443,937 – 18,444,046	-	11	122	79.73	-2.30	0.74	0.991426
15332	dm3.chrX	18,449,333 – 18,449,402	- - - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" - - - -	21123	18,449,333 – 18,449,402	+	4	72	80.33	-1.40	0.78	0.742898
15333	dm3.chrX	18,459,796 – 18,459,891	FBnoncoding="tRNA;ID=FBtr0074600;Name=tRNA:CR32546-RA;Parent=FBgn0052546;Alias=CR32546-RA;Dbxref=FlyBase_Annotation_IDs:CR32546-RA;score_text=Weakly" tRNAscann="Pro_chrX_trna14" - intron="intron;ID=intron_CG6500:7_CG6500:2;Name=Bx-in;Parent=FBtr0074599;parent_type=mRNA" "Rfam_10.0=RF00005;tRNA;ABJB010899613.1/3592-3663\|2.5e-29" - - -	21124	18,459,796 – 18,459,891	+	10	104	72.22	-0.90	0.91	0.969103
15333	dm3.chrX	18,459,796 – 18,459,891		21125	18,459,796 – 18,459,891	-	10	104	72.22	-2.28	0.87	0.998562
15334	dm3.chrX	18,471,091 – 18,471,189	- - - - - - - -	21126	18,471,091 – 18,471,189	-	9	109	80.03	-2.54	0.62	0.981207
15335	dm3.chrX	18,474,386 – 18,474,467	- - - - - - - -	21127	18,474,386 – 18,474,467	+	12	90	65.32	-1.76	0.40	0.978484
15335	dm3.chrX	18,474,386 – 18,474,467	- - - - - - - -	21128	18,474,386 – 18,474,467	-	12	90	65.32	-1.35	0.34	0.704729
15336	dm3.chrX	18,484,818 – 18,484,896	- - - - - - - -	21129	18,484,818 – 18,484,896	+	5	90	75.24	-2.04	0.61	0.940366
15337	dm3.chrX	18,486,142 – 18,486,212	- - - - - - - -	21130	18,486,142 – 18,486,212	+	9	73	82.68	-1.94	0.59	0.657457
15338	dm3.chrX	18,489,469 – 18,489,583	- - - - - - - -	21131	18,489,469 – 18,489,583	-	6	126	75.23	-1.15	0.62	0.589330
15339	dm3.chrX	18,505,608 – 18,505,724	- - CDS="CDS;ID=CDS_CG15040:1_904;Name=CG15040-cds;Parent=FBtr0074618;parent_type=mRNA" - - - - -	21132	18,505,608 – 18,505,724	-	5	116	68.54	-1.04	0.52	0.717833
15340	dm3.chrX	18,506,485 – 18,506,645	- - CDS="CDS;ID=CDS_CG15040:1_904;Name=CG15040-cds;Parent=FBtr0074618;parent_type=mRNA" - - - - -	21133	18,506,485 – 18,506,605	+	3	120	87.22	-2.31	0.81	0.933297
15340	dm3.chrX	18,506,485 – 18,506,645		21134	18,506,525 – 18,506,645	+	3	120	83.33	-1.80	0.70	0.500000
15341	dm3.chrX	18,510,195 – 18,510,286	- - - - - - - -	21135	18,510,195 – 18,510,286	+	6	99	84.28	-1.82	0.69	0.680200
15342	dm3.chrX	18,517,779 – 18,517,834	- - - - - - - -	21136	18,517,779 – 18,517,834	-	5	55	91.64	-2.16	0.91	0.964004
15343	dm3.chrX	18,519,515 – 18,519,607	- - - intron="intron;ID=intron_CG6531:4_CG6531:5;Name=wgn-in;Parent=FBtr0074617;parent_type=mRNA" - - - -	21137	18,519,515 – 18,519,607	+	5	105	66.07	-0.99	0.65	0.898016
15344	dm3.chrX	18,525,934 – 18,526,027	- - - intron="intron;ID=intron_CG6531:1_CG6531:2;Name=wgn-in;Parent=FBtr0074617;parent_type=mRNA" - - - -	21138	18,525,934 – 18,526,027	+	4	96	81.36	-1.86	0.74	0.876165
15345	dm3.chrX	18,533,331 – 18,533,422	- - CDS="CDS;ID=CDS_FBgn0027335:6_977;Name=Rip11-cds;Parent=FBtr0074616;parent_type=mRNA" - - - - -	21139	18,533,331 – 18,533,422	+	5	97	89.50	-2.36	0.85	0.962883
15346	dm3.chrX	18,535,019 – 18,535,126	- - - intron="intron;ID=intron_FBgn0027335:9_FBgn0027335:8;Name=Rip11-in;Parent=FBtr0074616,FBtr0301545;parent_type=mRNA" - - - -	21140	18,535,019 – 18,535,119	+	5	115	80.90	-2.37	0.72	0.974313
				21141	18,535,034 – 18,535,126	+	4	107	76.57	-1.40	0.68	0.634252
				21142	18,535,034 – 18,535,126	-	4	107	76.57	-2.04	0.52	0.670487
15347	dm3.chrX	18,537,190 – 18,537,284	- - - intron="intron;ID=intron_FBgn0027335:9_FBgn0027335:8;Name=Rip11-in;Parent=FBtr0074616,FBtr0301545;parent_type=mRNA" - - - -	21143	18,537,190 – 18,537,284	+	5	100	55.72	-1.35	0.36	0.864744
15348	dm3.chrX	18,540,132 – 18,540,185	- - - intron="intron;ID=intron_FBgn0027335:9_FBgn0027335:8;Name=Rip11-in;Parent=FBtr0074616,FBtr0301545;parent_type=mRNA" - - - -	21144	18,540,132 – 18,540,185	+	5	57	77.29	-1.70	0.60	0.738182
15349	dm3.chrX	18,546,053 – 18,546,149	- - CDS="CDS;ID=CDS_CG6632:2_896;Name=Ing3-cds;Parent=FBtr0074614;parent_type=mRNA" - - - - -	21145	18,546,053 – 18,546,149	+	10	111	57.09	-1.07	0.32	0.606409
15350	dm3.chrX	18,562,465 – 18,562,577	- - - - - - - -	21146	18,562,465 – 18,562,577	+	5	112	98.12	-1.73	0.95	0.865680
15350	dm3.chrX	18,562,465 – 18,562,577	- - - - - - - -	21147	18,562,465 – 18,562,577	-	5	112	98.12	-0.95	0.98	0.532524
15351	dm3.chrX	18,566,283 – 18,566,377	- - - - - - - -	21148	18,566,283 – 18,566,377	+	6	116	65.62	-1.42	0.40	0.587375
15352	dm3.chrX	18,570,552 – 18,570,669	- - - - - - - -	21149	18,570,552 – 18,570,650	+	7	119	80.68	-1.62	0.76	0.887964
				21150	18,570,565 – 18,570,669	+	4	106	73.09	-0.91	0.73	0.596263
				21151	18,570,565 – 18,570,669	-	4	106	73.09	-1.14	0.72	0.756060
15353	dm3.chrX	18,574,593 – 18,574,701	- - - - - - - -	21152	18,574,593 – 18,574,701	-	3	108	75.58	-2.01	0.76	0.940916
15354	dm3.chrX	18,577,146 – 18,577,196	- - - - - - - -	21153	18,577,146 – 18,577,196	+	3	50	100.00	-1.29	1.00	0.808687
15355	dm3.chrX	18,583,032 – 18,583,083	- - - - - - - -	21154	18,583,032 – 18,583,083	+	3	51	93.46	-4.00	0.99	0.998887
15355	dm3.chrX	18,583,032 – 18,583,083	- - - - - - - -	21155	18,583,032 – 18,583,083	-	3	51	93.46	-4.21	1.01	0.999044
15356	dm3.chrX	18,587,085 – 18,587,179	- - - - - - - -	21156	18,587,085 – 18,587,179	-	5	102	63.17	-0.69	0.54	0.557143
15357	dm3.chrX	18,592,765 – 18,592,878	- - - - - - - -	21157	18,592,765 – 18,592,878	+	3	114	85.21	-2.26	0.70	0.779981
15357	dm3.chrX	18,592,765 – 18,592,878	- - - - - - - -	21158	18,592,765 – 18,592,878	-	3	114	85.21	-2.60	0.69	0.910246
15358	dm3.chrX	18,599,132 – 18,599,227	- - - - - - - -	21159	18,599,132 – 18,599,227	-	4	104	85.26	-2.47	0.86	0.985514
15359	dm3.chrX	18,599,387 – 18,599,481	- - - - - - - -	21160	18,599,387 – 18,599,481	-	3	99	84.41	-2.64	0.62	0.838643
15360	dm3.chrX	18,602,095 – 18,602,210	- - - - - - - -	21161	18,602,095 – 18,602,210	+	3	115	87.98	-2.88	0.79	0.979260
15361	dm3.chrX	18,608,506 – 18,608,616	- - - intron="intron;ID=intron_FBgn0259197:5_FBgn0259197:4;Name=CCKLR-17D1-in;Parent=FBtr0299681;parent_type=mRNA" - - - -	21162	18,608,506 – 18,608,616	+	4	113	86.67	-2.46	0.81	0.964087
15361	dm3.chrX	18,608,506 – 18,608,616		21163	18,608,506 – 18,608,616	-	4	113	86.67	-1.80	0.75	0.563445
15362	dm3.chrX	18,619,021 – 18,619,164	- - - intron="intron;ID=intron_FBgn0259197:5_FBgn0259197:4;Name=CCKLR-17D1-in;Parent=FBtr0299681;parent_type=mRNA" - - - -	21164	18,619,021 – 18,619,164	-	3	143	82.23	-2.08	0.67	0.685080
15363	dm3.chrX	18,630,709 – 18,630,825	- - - - - - - -	21165	18,630,709 – 18,630,825	-	5	120	86.99	-1.36	0.82	0.541802
15364	dm3.chrX	18,641,416 – 18,641,528	- - CDS="CDS;ID=CDS_CG12609:4_899;Name=CG12609-cds;Parent=FBtr0074606;parent_type=mRNA" - - - - -	21166	18,641,416 – 18,641,528	+	7	112	63.74	-1.15	0.38	0.757219
15365	dm3.chrX	18,642,592 – 18,642,706	- - - - - - - -	21167	18,642,592 – 18,642,706	+	7	119	64.83	-1.94	0.24	0.590936
15365	dm3.chrX	18,642,592 – 18,642,706	- - - - - - - -	21168	18,642,592 – 18,642,706	-	7	119	64.83	-2.02	0.23	0.603809
15366	dm3.chrX	18,643,101 – 18,643,208	- - - - - - - -	21169	18,643,101 – 18,643,208	+	4	118	84.51	-2.23	0.58	0.511741
15367	dm3.chrX	18,653,099 – 18,653,158	- - - - - - - -	21170	18,653,099 – 18,653,158	+	5	67	57.23	-0.13	0.62	0.798837
15368	dm3.chrX	18,654,034 – 18,654,167	- - - - - - - -	21171	18,654,034 – 18,654,134	+	6	104	67.70	-1.62	0.38	0.744738
15368	dm3.chrX	18,654,034 – 18,654,167	- - - - - - - -	21172	18,654,062 – 18,654,167	-	6	115	60.62	-2.51	0.26	0.958972
15369	dm3.chrX	18,661,661 – 18,661,711	- - - intron="intron;ID=intron_FBgn0030954:5_FBgn0030954:4;Name=CCKLR-17D3-in;Parent=FBtr0113003;parent_type=mRNA" - - - -	21173	18,661,661 – 18,661,711	+	4	51	79.87	-0.96	0.86	0.653803
15369	dm3.chrX	18,661,661 – 18,661,711		21174	18,661,661 – 18,661,711	-	4	51	79.87	-1.50	0.88	0.932434
15370	dm3.chrX	18,665,651 – 18,665,746	- - - intron="intron;ID=intron_FBgn0030954:5_FBgn0030954:4;Name=CCKLR-17D3-in;Parent=FBtr0113003;parent_type=mRNA" - - - -	21175	18,665,651 – 18,665,746	+	5	109	55.15	-0.99	0.39	0.810869
15371	dm3.chrX	18,666,332 – 18,666,422	- - - intron="intron;ID=intron_FBgn0030954:5_FBgn0030954:4;Name=CCKLR-17D3-in;Parent=FBtr0113003;parent_type=mRNA" - - - -	21176	18,666,332 – 18,666,422	-	5	110	58.14	-0.88	0.47	0.781558
15372	dm3.chrX	18,671,079 – 18,671,196	- - - intron="intron;ID=intron_CG6891:1_CG6891:2;Name=CG6891-in;Parent=FBtr0074631;parent_type=mRNA" - - - -	21177	18,671,079 – 18,671,196	+	5	117	82.19	-1.44	0.71	0.508451
15373	dm3.chrX	18,674,151 – 18,674,245	- - - intron="intron;ID=intron_CG6891:4_CG6891:2;Name=CG6891-in;Parent=FBtr0074632;parent_type=mRNA" - - - -	21178	18,674,151 – 18,674,245	-	5	110	66.47	-2.08	0.34	0.756116
15374	dm3.chrX	18,686,710 – 18,686,806	- - - intron="intron;ID=intron_CG7001:6_CG7001:7;Name=Pk17E-in;Parent=FBtr0074634;parent_type=mRNA" - - - -	21179	18,686,710 – 18,686,806	-	6	97	75.55	-1.97	0.48	0.776464
15375	dm3.chrX	18,690,925 – 18,691,025	- - - - - - - -	21180	18,690,925 – 18,691,025	-	5	109	45.76	-1.85	0.23	0.936660
15376	dm3.chrX	18,707,447 – 18,707,552	- - - - - - - -	21181	18,707,447 – 18,707,552	+	4	105	90.63	-1.03	0.94	0.605804
15377	dm3.chrX	18,708,783 – 18,708,895	- - - - - - - -	21182	18,708,783 – 18,708,895	-	5	120	88.35	-2.07	0.79	0.855056
15378	dm3.chrX	18,713,540 – 18,713,638	- - - - - - - -	21183	18,713,540 – 18,713,638	-	4	120	79.75	-1.53	0.65	0.500000
15379	dm3.chrX	18,721,651 – 18,721,739	- - - - - - - -	21184	18,721,651 – 18,721,739	+	7	94	75.89	-1.25	0.68	0.855583
15380	dm3.chrX	18,731,313 – 18,731,365	- - - intron="intron;ID=intron_FBgn0030964:2_FBgn0030964:3;Name=Pvf1-in;Parent=FBtr0074640;parent_type=mRNA" - - - -	21185	18,731,313 – 18,731,365	+	3	52	97.40	-1.12	0.97	0.608613
15381	dm3.chrX	18,750,554 – 18,750,701	- - - intron="intron;ID=intron_CG7322:1_CG7322:2;Name=CG7322-in;Parent=FBtr0074654;parent_type=mRNA" - - - -	21186	18,750,554 – 18,750,661	+	5	109	91.61	-1.51	0.89	0.724284
				21187	18,750,554 – 18,750,661	-	5	109	91.61	-1.44	0.87	0.584026
				21188	18,750,590 – 18,750,701	+	5	112	89.26	-2.68	0.78	0.969022
				21189	18,750,590 – 18,750,701	-	5	112	89.26	-2.01	0.84	0.903757
15382	dm3.chrX	18,758,992 – 18,759,097	- - - - - - - -	21190	18,758,992 – 18,759,097	-	4	110	78.29	-1.39	0.82	0.873826
15383	dm3.chrX	18,761,808 – 18,761,923	- - - intron="intron;ID=intron_FBgn0085430:1_FBgn0085430:2;Name=CG34401-in;Parent=FBtr0112653;parent_type=mRNA" - - - -	21191	18,761,808 – 18,761,923	+	5	115	76.54	-2.68	0.33	0.618019
15384	dm3.chrX	18,771,291 – 18,771,382	- - CDS="CDS;ID=CDS_FBgn0085430:5_950;Name=CG34401-cds;Parent=FBtr0112653;parent_type=mRNA" - - - - -	21192	18,771,291 – 18,771,382	-	9	95	73.82	-1.62	0.65	0.982552
15385	dm3.chrX	18,776,230 – 18,776,308	- - - - - - - -	21193	18,776,230 – 18,776,308	+	6	78	76.53	-1.49	0.59	0.756374
15386	dm3.chrX	18,779,297 – 18,779,384	- - - intron="intron;ID=intron_CG7332:1_CG7332:2;Name=CG7332-in;Parent=FBtr0074647;parent_type=mRNA" - - - -	21194	18,779,297 – 18,779,384	+	6	87	81.07	-0.96	0.79	0.594549
15387	dm3.chrX	18,784,768 – 18,784,870	- - CDS="CDS;ID=CDS_CG7358:3_904;Name=CG7358-cds;Parent=FBtr0074652;parent_type=mRNA" - - - - -	21195	18,784,768 – 18,784,870	+	11	113	73.20	-1.27	0.50	0.793051
15388	dm3.chrX	18,785,960 – 18,786,020	- - - intron="intron;ID=intron_CG7358:2_CG7358:3;Name=CG7358-in;Parent=FBtr0074652;parent_type=mRNA" - - - -	21196	18,785,960 – 18,786,020	+	4	64	74.66	-2.48	0.35	0.507710
15388	dm3.chrX	18,785,960 – 18,786,020		21197	18,785,960 – 18,786,020	-	4	64	74.66	-2.70	0.53	0.979638
15389	dm3.chrX	18,792,619 – 18,792,739	- - - - - - - -	21198	18,792,619 – 18,792,739	-	3	120	95.00	-1.61	0.93	0.799153
15390	dm3.chrX	18,795,818 – 18,795,918	- - - intron="intron;ID=intron_FBgn0030976:2_FBgn0030976:3;Name=CG7378-in;Parent=FBtr0113004;parent_type=mRNA" - - - -	21199	18,795,818 – 18,795,918	+	6	101	79.72	-1.69	0.66	0.863463
15391	dm3.chrX	18,796,058 – 18,796,145	- - - intron="intron;ID=intron_FBgn0030976:2_FBgn0030976:3;Name=CG7378-in;Parent=FBtr0113004;parent_type=mRNA" - - - -	21200	18,796,058 – 18,796,145	-	3	87	90.23	-1.41	0.96	0.871218
15392	dm3.chrX	18,808,455 – 18,808,513	- - - - - - - -	21201	18,808,455 – 18,808,513	-	3	58	93.10	-0.93	0.96	0.514187
15393	dm3.chrX	18,814,001 – 18,814,153	- - - - - - - -	21202	18,814,001 – 18,814,153	-	5	153	73.31	-1.93	0.42	0.575747
15394	dm3.chrX	18,816,301 – 18,816,393	- - - - - - - -	21203	18,816,301 – 18,816,393	-	5	113	76.35	-1.73	0.66	0.852583
15395	dm3.chrX	18,827,715 – 18,827,831	- - - intron="intron;ID=intron_FBgn0260232:1_FBgn0260232:2;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21204	18,827,715 – 18,827,831	-	5	126	70.20	-1.47	0.53	0.856845
15396	dm3.chrX	18,830,136 – 18,830,236	- - - intron="intron;ID=intron_FBgn0260232:1_FBgn0260232:2;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21205	18,830,136 – 18,830,236	-	5	100	90.89	-2.78	0.66	0.864506
15397	dm3.chrX	18,841,533 – 18,841,644	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21206	18,841,533 – 18,841,644	+	6	115	78.64	-1.62	0.57	0.635581
15397	dm3.chrX	18,841,533 – 18,841,644		21207	18,841,533 – 18,841,644	-	6	115	78.64	-1.48	0.63	0.705717
15398	dm3.chrX	18,849,416 – 18,849,498	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21208	18,849,416 – 18,849,498	-	6	82	70.51	-1.83	0.40	0.789750
15399	dm3.chrX	18,849,725 – 18,849,854	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21209	18,849,725 – 18,849,817	+	3	92	90.23	-2.52	0.92	0.985733
				21210	18,849,725 – 18,849,817	-	3	92	90.23	-2.12	0.80	0.776688
				21211	18,849,752 – 18,849,854	+	3	102	91.22	-3.10	0.93	0.995797
15400	dm3.chrX	18,860,039 – 18,860,114	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21212	18,860,039 – 18,860,114	+	7	81	71.06	-1.04	0.49	0.569855
15401	dm3.chrX	18,868,911 – 18,869,060	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21213	18,868,911 – 18,869,060	+	7	170	80.11	-1.83	0.74	0.946862
15402	dm3.chrX	18,870,905 – 18,871,011	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21214	18,870,905 – 18,871,011	+	5	117	88.37	-1.02	0.90	0.500000
15403	dm3.chrX	18,875,515 – 18,875,632	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21215	18,875,515 – 18,875,631	+	11	117	80.31	-2.02	0.56	0.935330
15403	dm3.chrX	18,875,515 – 18,875,632		21216	18,875,515 – 18,875,632	+	11	117	80.32	-2.02	0.56	0.937660
15404	dm3.chrX	18,878,541 – 18,878,658	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21217	18,878,541 – 18,878,643	-	10	113	90.75	-1.07	0.90	0.531883
				21218	18,878,563 – 18,878,658	+	10	121	86.70	-1.06	0.93	0.779825
				21219	18,878,563 – 18,878,658	-	10	121	86.70	-2.19	0.80	0.957555
15405	dm3.chrX	18,880,014 – 18,880,088	- - - intron="intron;ID=intron_FBgn0260232:2_FBgn0260232:3;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21220	18,880,014 – 18,880,088	+	7	83	61.25	-1.77	0.34	0.943070
15405	dm3.chrX	18,880,014 – 18,880,088		21221	18,880,014 – 18,880,088	-	7	83	61.25	-1.48	0.46	0.986212
15406	dm3.chrX	18,891,372 – 18,891,490	- - - intron="intron;ID=intron_FBgn0260232:3_FBgn0260232:4;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21222	18,891,372 – 18,891,490	+	5	122	86.82	-2.36	0.75	0.936613
15407	dm3.chrX	18,892,143 – 18,892,256	- - - intron="intron;ID=intron_FBgn0260232:3_FBgn0260232:4;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21223	18,892,143 – 18,892,237	+	11	103	86.03	-2.10	0.65	0.829306
15407	dm3.chrX	18,892,143 – 18,892,256		21224	18,892,150 – 18,892,256	+	11	116	86.98	-1.83	0.74	0.809976
15408	dm3.chrX	18,892,699 – 18,892,789	- - - intron="intron;ID=intron_FBgn0260232:3_FBgn0260232:4;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21225	18,892,699 – 18,892,789	+	9	105	65.29	-1.25	0.39	0.734178
15409	dm3.chrX	18,894,625 – 18,894,724	- - - intron="intron;ID=intron_FBgn0260232:3_FBgn0260232:4;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21226	18,894,625 – 18,894,724	-	6	99	80.84	-1.41	0.66	0.607188
15410	dm3.chrX	18,896,917 – 18,896,977	- - - intron="intron;ID=intron_FBgn0260232:3_FBgn0260232:4;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21227	18,896,917 – 18,896,977	+	5	60	98.67	-1.89	0.94	0.883692
15410	dm3.chrX	18,896,917 – 18,896,977		21228	18,896,917 – 18,896,977	-	5	60	98.67	-1.38	1.00	0.868929
15411	dm3.chrX	18,900,663 – 18,900,754	- - - intron="intron;ID=intron_FBgn0260232:4_FBgn0260232:5;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21229	18,900,663 – 18,900,754	-	4	96	70.80	-1.17	0.70	0.841615
15412	dm3.chrX	18,901,944 – 18,902,037	- - - intron="intron;ID=intron_FBgn0260232:4_FBgn0260232:5;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21230	18,901,944 – 18,902,037	-	8	112	73.74	-1.27	0.61	0.807366
15413	dm3.chrX	18,914,520 – 18,914,614	- - - intron="intron;ID=intron_FBgn0260232:6_FBgn0260232:7;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21231	18,914,520 – 18,914,614	-	3	94	77.78	-0.96	0.84	0.537146
15414	dm3.chrX	18,916,226 – 18,916,378	- - - intron="intron;ID=intron_FBgn0260232:6_FBgn0260232:7;Name=CG42506-in;Parent=FBtr0300640;parent_type=mRNA" - - - -	21232	18,916,226 – 18,916,378	-	5	169	66.46	-1.64	0.36	0.597822
15415	dm3.chrX	18,926,785 – 18,926,893	- - - - - - - -	21233	18,926,785 – 18,926,893	-	4	118	91.59	-2.61	0.89	0.982989
15416	dm3.chrX	18,936,907 – 18,937,002	- - - - - - - -	21234	18,936,907 – 18,937,002	+	5	95	82.79	-1.20	0.89	0.807170
15416	dm3.chrX	18,936,907 – 18,937,002	- - - - - - - -	21235	18,936,907 – 18,937,002	-	5	95	82.79	-2.27	0.82	0.980129
15417	dm3.chrX	18,937,340 – 18,937,545	- - - - - - - -	21236	18,937,340 – 18,937,437	+	3	118	70.78	-0.65	0.84	0.507377
15417	dm3.chrX	18,937,340 – 18,937,545	- - - - - - - -	21237	18,937,437 – 18,937,545	+	4	113	63.36	-1.81	0.34	0.614979
15418	dm3.chrX	18,938,518 – 18,938,632	- - - - - - - -	21238	18,938,518 – 18,938,615	+	11	112	74.90	-1.72	0.56	0.950179
15418	dm3.chrX	18,938,518 – 18,938,632	- - - - - - - -	21239	18,938,531 – 18,938,632	+	9	113	78.37	-1.78	0.67	0.938703
15419	dm3.chrX	18,947,690 – 18,947,771	- - - - - - - -	21240	18,947,690 – 18,947,771	+	5	95	72.74	-1.26	0.62	0.754882
15420	dm3.chrX	18,948,573 – 18,948,664	- - - - - - - -	21241	18,948,573 – 18,948,664	+	3	91	92.57	-1.27	0.93	0.636944
15421	dm3.chrX	18,951,925 – 18,951,975	- - - - - - - -	21242	18,951,925 – 18,951,975	-	4	50	99.00	-1.33	0.98	0.768267
15422	dm3.chrX	18,965,411 – 18,965,572	- - - - - - - -	21243	18,965,411 – 18,965,572	+	4	166	62.46	-3.09	0.36	0.991485
15422	dm3.chrX	18,965,411 – 18,965,572	- - - - - - - -	21244	18,965,411 – 18,965,572	-	4	166	62.46	-2.65	0.36	0.963468
15423	dm3.chrX	18,972,940 – 18,973,031	- - - - - - - -	21245	18,972,940 – 18,973,031	+	3	105	70.00	-2.23	0.56	0.945896
15423	dm3.chrX	18,972,940 – 18,973,031	- - - - - - - -	21246	18,972,940 – 18,973,031	-	3	105	70.00	-2.52	0.39	0.769307
15424	dm3.chrX	18,973,182 – 18,973,288	- - - - - - - -	21247	18,973,182 – 18,973,288	+	4	109	88.16	-1.57	0.80	0.532346
15425	dm3.chrX	18,974,493 – 18,974,592	- - - - - - - -	21248	18,974,493 – 18,974,586	+	6	117	66.75	-1.40	0.46	0.795718
				21249	18,974,493 – 18,974,586	-	6	117	66.75	-1.73	0.53	0.976801
				21250	18,974,493 – 18,974,592	+	6	119	69.87	-1.97	0.51	0.965550
				21251	18,974,493 – 18,974,592	-	6	119	69.87	-2.10	0.47	0.959124
15426	dm3.chrX	18,975,423 – 18,975,540	- - - - - - - -	21252	18,975,423 – 18,975,540	+	3	117	87.76	-2.38	0.66	0.624680
15426	dm3.chrX	18,975,423 – 18,975,540	- - - - - - - -	21253	18,975,423 – 18,975,540	-	3	117	87.76	-2.37	0.77	0.892975
15427	dm3.chrX	18,980,874 – 18,980,934	- - - - - - - -	21254	18,980,874 – 18,980,934	-	4	62	82.79	-1.71	0.80	0.851739
15428	dm3.chrX	18,981,277 – 18,981,418	- - - - - - - -	21255	18,981,277 – 18,981,389	+	4	115	87.96	-1.63	0.82	0.662657
				21256	18,981,277 – 18,981,389	-	4	115	87.96	-2.11	0.72	0.693272
				21257	18,981,303 – 18,981,418	+	4	115	91.16	-2.02	0.86	0.888947
				21258	18,981,303 – 18,981,418	-	4	115	91.16	-1.93	0.83	0.782399
15429	dm3.chrX	18,987,297 – 18,987,411	- - - - - - - -	21259	18,987,297 – 18,987,411	+	5	114	64.43	-1.94	0.31	0.778717
15430	dm3.chrX	18,987,672 – 18,987,724	- - - - - - - -	21260	18,987,672 – 18,987,724	+	3	52	92.26	-2.20	0.85	0.887878
15431	dm3.chrX	18,990,944 – 18,991,062	- - - - - - - -	21261	18,990,944 – 18,991,062	-	4	120	78.55	-1.74	0.58	0.541905
15432	dm3.chrX	18,994,552 – 18,994,604	- - - - - - - -	21262	18,994,552 – 18,994,604	-	3	54	90.12	-0.76	0.97	0.506359
15433	dm3.chrX	18,996,802 – 18,996,869	- - - - - - - -	21263	18,996,802 – 18,996,869	+	9	89	86.21	-4.01	0.41	0.982084
15433	dm3.chrX	18,996,802 – 18,996,869	- - - - - - - -	21264	18,996,802 – 18,996,869	-	9	89	86.21	-2.99	0.59	0.955517
15434	dm3.chrX	18,998,909 – 18,998,961	- - - - - - - -	21265	18,998,909 – 18,998,961	+	3	52	97.44	-1.51	0.92	0.624114
15435	dm3.chrX	19,005,188 – 19,005,341	- - - - - - - -	21266	19,005,188 – 19,005,341	+	5	169	73.85	-1.22	0.59	0.590834
15436	dm3.chrX	19,006,955 – 19,007,055	- - - - - - - -	21267	19,006,955 – 19,007,055	+	5	105	80.86	-1.83	0.62	0.708177
15437	dm3.chrX	19,013,959 – 19,014,085	- - - - - - - -	21268	19,013,959 – 19,014,059	+	8	106	65.82	-1.32	0.35	0.596554
				21269	19,013,984 – 19,014,085	+	8	104	64.85	-1.83	0.35	0.922034
				21270	19,013,984 – 19,014,085	-	8	104	64.85	-2.58	0.38	0.996865
15438	dm3.chrX	19,028,894 – 19,028,984	- - - - - - - -	21271	19,028,894 – 19,028,984	-	7	103	69.28	-1.40	0.46	0.796313
15439	dm3.chrX	19,030,874 – 19,030,950	- - - intron="intron;ID=intron_FBgn0259169:4_FBgn0259169:1;Name=RhoGAP18B-in;Parent=FBtr0299623;parent_type=mRNA" - - - -	21272	19,030,874 – 19,030,950	+	6	84	60.67	-1.27	0.63	0.995872
15439	dm3.chrX	19,030,874 – 19,030,950		21273	19,030,874 – 19,030,950	-	6	84	60.67	-0.96	0.47	0.903847
15440	dm3.chrX	19,045,537 – 19,045,631	- - CDS="CDS;ID=CDS_FBgn0259169:8_961;Name=RhoGAP18B-cds;Parent=FBtr0299623,FBtr0299624;parent_type=mRNA" - - - - -	21274	19,045,537 – 19,045,631	-	10	96	72.53	-1.08	0.46	0.555344
15441	dm3.chrX	19,051,775 – 19,051,905	- - - - - - - -	21275	19,051,775 – 19,051,886	+	6	113	78.51	-1.88	0.62	0.874889
				21276	19,051,775 – 19,051,886	-	6	113	78.51	-1.64	0.55	0.500000
				21277	19,051,809 – 19,051,905	+	6	100	78.69	-1.70	0.66	0.829130
				21278	19,051,809 – 19,051,905	-	6	100	78.69	-1.67	0.66	0.812892
15442	dm3.chrX	19,057,752 – 19,057,849	- - - - - - - -	21279	19,057,752 – 19,057,849	+	3	120	59.59	-1.83	0.48	0.940341
15443	dm3.chrX	19,078,254 – 19,078,341	- - - intron="intron;ID=intron_FBgn0030992:1_FBgn0030992:2;Name=CG33253-in;Parent=FBtr0074668;parent_type=mRNA" - - - -	21280	19,078,254 – 19,078,341	+	4	91	69.36	-1.78	0.47	0.772547
15444	dm3.chrX	19,087,504 – 19,087,624	- - - - - - - -	21281	19,087,504 – 19,087,597	+	6	95	68.89	-2.68	0.40	0.994759
				21282	19,087,504 – 19,087,597	-	6	95	68.89	-2.57	0.40	0.992514
				21283	19,087,522 – 19,087,624	+	7	113	59.12	-2.34	0.17	0.766777
				21284	19,087,522 – 19,087,624	-	7	113	59.12	-1.69	0.25	0.667513
15445	dm3.chrX	19,089,585 – 19,089,680	- - - - - - - -	21285	19,089,585 – 19,089,680	-	7	110	58.78	-0.46	0.51	0.684760
15446	dm3.chrX	19,091,138 – 19,091,206	- - - - - - - -	21286	19,091,138 – 19,091,206	+	4	68	85.05	-2.50	0.68	0.918682
15447	dm3.chrX	19,101,727 – 19,101,879	- - - - - - - -	21287	19,101,727 – 19,101,840	-	5	120	83.64	-1.84	0.73	0.798576
15447	dm3.chrX	19,101,727 – 19,101,879	- - - - - - - -	21288	19,101,767 – 19,101,879	-	5	116	69.61	-1.32	0.46	0.507076
15448	dm3.chrX	19,104,279 – 19,104,390	- - CDS="CDS;ID=CDS_FBgn0030998:3_1001;Name=CG14195-cds;Parent=FBtr0074692;parent_type=mRNA" - - - - -	21289	19,104,279 – 19,104,390	-	13	111	72.58	-0.90	0.47	0.554107
15449	dm3.chrX	19,104,857 – 19,105,017	- - CDS="CDS;ID=CDS_FBgn0030998:4_1001;Name=CG14195-cds;Parent=FBtr0074692;parent_type=mRNA" - - - - -	21290	19,104,857 – 19,104,977	+	12	120	81.21	-2.24	0.47	0.791751
				21291	19,104,857 – 19,104,977	-	12	120	81.21	-2.78	0.57	0.990307
				21292	19,104,897 – 19,105,017	+	12	120	82.37	-2.03	0.49	0.613068
15450	dm3.chrX	19,111,960 – 19,112,077	- - - - - - - -	21293	19,111,960 – 19,112,077	-	4	135	76.35	-1.36	0.65	0.500000
15451	dm3.chrX	19,114,431 – 19,114,493	- - - - - - - -	21294	19,114,431 – 19,114,493	-	11	65	83.43	-1.92	0.66	0.865891
15452	dm3.chrX	19,121,979 – 19,122,106	- - - intron="intron;ID=intron_CG7884:1_CG7884:2;Name=CG7884-in;Parent=FBtr0074674;parent_type=mRNA" - - - -	21295	19,121,979 – 19,122,093	-	5	114	92.65	-1.85	0.84	0.730202
15452	dm3.chrX	19,121,979 – 19,122,106		21296	19,122,015 – 19,122,106	-	4	91	95.13	-2.64	0.82	0.927809
15453	dm3.chrX	19,125,862 – 19,125,979	- - - intron="intron;ID=intron_CG7884:1_CG7884:2;Name=CG7884-in;Parent=FBtr0074674;parent_type=mRNA" - - - -	21297	19,125,862 – 19,125,979	-	3	118	86.36	-1.77	0.79	0.647224
15454	dm3.chrX	19,137,769 – 19,137,924	- - CDS="CDS;ID=CDS_CG7889:1_921;Name=CG7889-cds;Parent=FBtr0074675;parent_type=mRNA" intron="intron;ID=intron_CG7889:1_CG7889:2;Name=CG7889-in;Parent=FBtr0074675;parent_type=mRNA" - - - -	21298	19,137,769 – 19,137,924	+	11	180	62.73	-1.20	0.31	0.506778
15455	dm3.chrX	19,155,852 – 19,155,937	- - - - - - - -	21299	19,155,852 – 19,155,937	+	6	88	70.70	-1.87	0.43	0.904896
15456	dm3.chrX	19,159,421 – 19,159,551	- - - intron="intron;ID=intron_FBgn0040068:4_FBgn0040068:5;Name=vav-in;Parent=FBtr0113316;parent_type=mRNA" - - - -	21300	19,159,421 – 19,159,551	+	4	146	77.08	-1.98	0.55	0.645167
15456	dm3.chrX	19,159,421 – 19,159,551		21301	19,159,421 – 19,159,551	-	4	146	77.08	-2.24	0.51	0.730879
15457	dm3.chrX	19,160,029 – 19,160,230	- - - intron="intron;ID=intron_FBgn0040068:4_FBgn0040068:5;Name=vav-in;Parent=FBtr0113316;parent_type=mRNA" - - - -	21302	19,160,029 – 19,160,121	+	3	110	78.23	-2.96	0.57	0.966322
				21303	19,160,029 – 19,160,121	-	3	110	78.23	-3.45	0.69	0.997205
				21304	19,160,047 – 19,160,155	-	4	114	68.34	-1.55	0.54	0.851204
				21305	19,160,121 – 19,160,230	-	3	110	82.97	-1.87	0.72	0.632635
15458	dm3.chrX	19,160,313 – 19,160,419	- - - intron="intron;ID=intron_FBgn0040068:4_FBgn0040068:5;Name=vav-in;Parent=FBtr0113316;parent_type=mRNA" - - - -	21306	19,160,313 – 19,160,419	-	5	111	59.77	-0.41	0.58	0.847783
15459	dm3.chrX	19,162,840 – 19,163,004	- - - - - - - -	21307	19,162,840 – 19,162,954	+	5	118	90.22	-2.15	0.76	0.773085
				21308	19,162,840 – 19,162,954	-	5	118	90.22	-3.24	0.84	0.994814
				21309	19,162,876 – 19,162,991	+	6	115	73.97	-0.98	0.63	0.724112
				21310	19,162,876 – 19,162,991	-	6	115	73.97	-2.18	0.65	0.994845
				21311	19,162,888 – 19,163,004	+	6	118	72.69	-0.67	0.67	0.679446
				21312	19,162,888 – 19,163,004	-	6	118	72.69	-2.55	0.57	0.997703
15460	dm3.chrX	19,170,433 – 19,170,493	- - - - - - - -	21313	19,170,433 – 19,170,493	-	5	60	61.72	-0.59	0.52	0.500000
15461	dm3.chrX	19,172,574 – 19,172,637	- - - intron="intron;ID=intron_FBgn0031010:4_FBgn0031010:2;Name=CG8028-in;Parent=FBtr0074685;parent_type=mRNA" - - - -	21314	19,172,574 – 19,172,637	+	3	68	64.77	-3.20	0.82	0.999285
15461	dm3.chrX	19,172,574 – 19,172,637		21315	19,172,574 – 19,172,637	-	3	68	64.77	-2.49	0.71	0.997193
15462	dm3.chrX	19,189,293 – 19,189,393	- - - intron="intron;ID=intron_FBgn0031011:5_FBgn0031011:3;Name=CG8034-in;Parent=FBtr0074684;parent_type=mRNA" - - - -	21316	19,189,293 – 19,189,393	+	6	107	70.07	-3.77	0.32	0.997554
15463	dm3.chrX	19,193,665 – 19,193,818	- - - - - - - -	21317	19,193,665 – 19,193,818	+	4	191	61.11	-1.58	0.48	0.914994
15464	dm3.chrX	19,197,662 – 19,197,712	- - CDS="CDS;ID=CDS_CG8051:2_903;Name=CG8051-cds;Parent=FBtr0074683;parent_type=mRNA" - - - - -	21318	19,197,662 – 19,197,712	-	12	50	78.58	-0.68	0.69	0.544801
15465	dm3.chrX	19,200,893 – 19,200,992	- - - intron="intron;ID=intron_CG8051:1_CG8051:2;Name=CG8051-in;Parent=FBtr0074683;parent_type=mRNA" - - - -	21319	19,200,893 – 19,200,992	+	5	101	69.62	-1.64	0.45	0.829406
15466	dm3.chrX	19,202,695 – 19,202,787	- - - - - - - -	21320	19,202,695 – 19,202,787	+	3	93	84.27	-2.89	0.64	0.936241
15467	dm3.chrX	19,204,920 – 19,204,976	- - - - - - - -	21321	19,204,920 – 19,204,976	+	5	58	67.26	-2.26	0.49	0.993166
15468	dm3.chrX	19,208,133 – 19,208,269	- - - intron="intron;ID=intron_CG8062:1_CG8062:2;Name=out-in;Parent=FBtr0074682;parent_type=mRNA" - - - -	21322	19,208,133 – 19,208,234	-	5	120	75.87	-1.65	0.73	0.933386
15468	dm3.chrX	19,208,133 – 19,208,269		21323	19,208,156 – 19,208,269	-	5	115	82.98	-1.85	0.65	0.662222
15469	dm3.chrX	19,217,359 – 19,217,463	- - - - - - - -	21324	19,217,359 – 19,217,461	-	5	117	77.06	-1.62	0.62	0.765854
15469	dm3.chrX	19,217,359 – 19,217,463	- - - - - - - -	21325	19,217,361 – 19,217,463	-	5	117	78.18	-1.61	0.60	0.630886
15470	dm3.chrX	19,218,369 – 19,218,498	- - - - - - - -	21326	19,218,369 – 19,218,468	-	4	106	54.70	-1.65	0.32	0.830467
				21327	19,218,404 – 19,218,498	+	4	110	53.68	-1.60	0.37	0.909570
				21328	19,218,404 – 19,218,498	-	4	110	53.68	-1.80	0.35	0.932129
15471	dm3.chrX	19,219,534 – 19,219,734	- - - - - - - -	21329	19,219,534 – 19,219,632	+	3	98	90.44	-2.01	0.83	0.803385
				21330	19,219,596 – 19,219,699	-	5	114	77.90	-2.39	0.47	0.827084
				21331	19,219,632 – 19,219,734	-	4	109	68.05	-1.14	0.58	0.643261
15472	dm3.chrX	19,219,786 – 19,219,876	- - - - - - - -	21332	19,219,786 – 19,219,876	+	3	90	87.04	-3.81	0.79	0.997687
15472	dm3.chrX	19,219,786 – 19,219,876	- - - - - - - -	21333	19,219,786 – 19,219,876	-	3	90	87.04	-4.58	0.81	0.999134
15473	dm3.chrX	19,248,566 – 19,248,702	- - - intron="intron;ID=intron_FBgn0031016:1_FBgn0031016:3;Name=kek5-in;Parent=FBtr0074707;parent_type=mRNA" - - - -	21334	19,248,566 – 19,248,686	-	3	120	95.56	-1.14	0.94	0.500000
15473	dm3.chrX	19,248,566 – 19,248,702		21335	19,248,588 – 19,248,702	+	4	120	83.62	-2.46	0.67	0.919426
15474	dm3.chrX	19,253,217 – 19,253,336	- - - intron="intron;ID=intron_FBgn0031016:1_FBgn0031016:3;Name=kek5-in;Parent=FBtr0074707;parent_type=mRNA" - - - -	21336	19,253,217 – 19,253,336	-	4	120	76.93	-2.44	0.55	0.956344
15475	dm3.chrX	19,253,369 – 19,253,478	- - - intron="intron;ID=intron_FBgn0031016:1_FBgn0031016:3;Name=kek5-in;Parent=FBtr0074707;parent_type=mRNA" - - - -	21337	19,253,369 – 19,253,478	-	4	117	82.25	-1.56	0.73	0.555986
15476	dm3.chrX	19,253,719 – 19,253,810	- - - intron="intron;ID=intron_FBgn0031016:1_FBgn0031016:3;Name=kek5-in;Parent=FBtr0074707;parent_type=mRNA" - - - -	21338	19,253,719 – 19,253,810	-	5	111	69.13	-1.78	0.42	0.539697
15477	dm3.chrX	19,256,682 – 19,256,775	- - - intron="intron;ID=intron_FBgn0031016:1_FBgn0031016:3;Name=kek5-in;Parent=FBtr0074707;parent_type=mRNA" - - - -	21339	19,256,682 – 19,256,775	-	4	97	88.11	-1.52	0.88	0.788524
15478	dm3.chrX	19,256,815 – 19,256,932	- - - intron="intron;ID=intron_FBgn0031016:1_FBgn0031016:3;Name=kek5-in;Parent=FBtr0074707;parent_type=mRNA" - - - -	21340	19,256,815 – 19,256,932	+	3	119	74.22	-3.22	0.44	0.973892
15479	dm3.chrX	19,259,556 – 19,259,669	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21341	19,259,556 – 19,259,669	+	6	119	63.27	-1.15	0.39	0.645208
15480	dm3.chrX	19,260,634 – 19,260,768	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21342	19,260,634 – 19,260,768	-	5	150	73.81	-2.59	0.43	0.928381
15481	dm3.chrX	19,268,249 – 19,268,359	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21343	19,268,249 – 19,268,359	+	4	116	75.96	-2.91	0.53	0.986272
15481	dm3.chrX	19,268,249 – 19,268,359		21344	19,268,249 – 19,268,359	-	4	116	75.96	-2.92	0.55	0.989555
15482	dm3.chrX	19,270,965 – 19,271,085	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21345	19,270,965 – 19,271,085	-	3	120	82.96	-1.92	0.72	0.700716
15483	dm3.chrX	19,271,948 – 19,272,053	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21346	19,271,948 – 19,272,053	+	5	120	88.45	-1.62	0.86	0.796058
15483	dm3.chrX	19,271,948 – 19,272,053		21347	19,271,948 – 19,272,053	-	5	120	88.45	-1.72	0.82	0.741269
15484	dm3.chrX	19,280,133 – 19,280,235	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21348	19,280,133 – 19,280,235	+	4	102	90.33	-1.10	0.92	0.577981
15485	dm3.chrX	19,282,579 – 19,282,699	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21349	19,282,579 – 19,282,699	+	5	120	96.83	-1.66	0.92	0.765959
15486	dm3.chrX	19,283,711 – 19,283,774	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21350	19,283,711 – 19,283,774	+	6	67	81.94	-1.98	0.57	0.662280
15487	dm3.chrX	19,286,075 – 19,286,189	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21351	19,286,075 – 19,286,189	+	5	118	75.13	-1.56	0.53	0.515666
15488	dm3.chrX	19,286,324 – 19,286,424	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21352	19,286,324 – 19,286,424	-	3	101	83.84	-2.54	0.58	0.702231
15489	dm3.chrX	19,288,540 – 19,288,630	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21353	19,288,540 – 19,288,630	+	3	97	87.63	-2.98	0.48	0.541099
15490	dm3.chrX	19,290,554 – 19,290,699	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21354	19,290,554 – 19,290,659	+	4	106	91.65	-1.89	0.90	0.908873
				21355	19,290,554 – 19,290,659	-	4	106	91.65	-2.18	0.95	0.979925
				21356	19,290,579 – 19,290,699	+	5	120	94.30	-2.17	0.92	0.955106
				21357	19,290,579 – 19,290,699	-	5	120	94.30	-1.47	0.90	0.635026
15491	dm3.chrX	19,292,649 – 19,292,754	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21358	19,292,649 – 19,292,754	+	4	120	85.25	-1.37	0.89	0.783598
15491	dm3.chrX	19,292,649 – 19,292,754		21359	19,292,649 – 19,292,754	-	4	120	85.25	-2.04	0.90	0.968851
15492	dm3.chrX	19,293,396 – 19,293,491	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21360	19,293,396 – 19,293,491	+	3	100	78.45	-1.44	0.78	0.716585
15493	dm3.chrX	19,293,507 – 19,293,601	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21361	19,293,507 – 19,293,601	+	4	110	66.24	-2.40	0.68	0.998141
15494	dm3.chrX	19,293,923 – 19,294,022	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21362	19,293,923 – 19,294,022	-	4	120	73.50	-1.43	0.59	0.568432
15495	dm3.chrX	19,296,317 – 19,296,383	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21363	19,296,317 – 19,296,383	-	5	66	95.45	-1.67	0.90	0.734385
15496	dm3.chrX	19,299,542 – 19,299,676	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21364	19,299,542 – 19,299,646	+	5	120	85.54	-1.66	0.83	0.796696
15496	dm3.chrX	19,299,542 – 19,299,676		21365	19,299,568 – 19,299,676	+	6	118	69.71	-1.04	0.65	0.891679
15497	dm3.chrX	19,303,266 – 19,303,417	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21366	19,303,266 – 19,303,382	+	5	120	90.17	-2.70	0.95	0.994682
				21367	19,303,266 – 19,303,382	-	5	120	90.17	-3.06	0.84	0.992372
				21368	19,303,301 – 19,303,417	-	5	121	85.06	-1.96	0.67	0.631536
15498	dm3.chrX	19,309,318 – 19,309,419	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21369	19,309,318 – 19,309,419	+	3	101	78.72	-4.91	0.74	0.999589
15498	dm3.chrX	19,309,318 – 19,309,419		21370	19,309,318 – 19,309,419	-	3	101	78.72	-3.36	0.77	0.997428
15499	dm3.chrX	19,309,465 – 19,309,558	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21371	19,309,465 – 19,309,558	-	5	108	56.68	-2.25	0.30	0.944191
15500	dm3.chrX	19,309,904 – 19,310,048	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21372	19,309,904 – 19,310,048	+	5	146	85.24	-1.25	0.88	0.717631
15501	dm3.chrX	19,312,335 – 19,312,442	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21373	19,312,335 – 19,312,442	-	5	120	89.48	-2.40	0.78	0.915847
15502	dm3.chrX	19,312,807 – 19,312,926	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21374	19,312,807 – 19,312,926	-	3	119	79.01	-1.28	0.90	0.850679
15503	dm3.chrX	19,312,966 – 19,313,187	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21375	19,312,966 – 19,313,084	-	4	120	77.69	-1.19	0.81	0.713810
				21376	19,313,006 – 19,313,108	+	5	120	86.92	-2.00	0.87	0.948161
				21377	19,313,084 – 19,313,187	-	5	120	87.48	-1.01	0.90	0.500000
15504	dm3.chrX	19,316,339 – 19,316,397	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21378	19,316,339 – 19,316,397	+	4	60	80.73	-2.72	0.62	0.970179
15505	dm3.chrX	19,318,161 – 19,318,276	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21379	19,318,161 – 19,318,276	+	4	115	67.18	-2.20	0.46	0.951766
15506	dm3.chrX	19,319,487 – 19,319,595	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21380	19,319,487 – 19,319,595	-	4	108	95.83	-1.94	0.83	0.594716
15507	dm3.chrX	19,319,722 – 19,319,853	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21381	19,319,722 – 19,319,840	+	5	118	91.62	-1.48	0.91	0.774208
15507	dm3.chrX	19,319,722 – 19,319,853		21382	19,319,759 – 19,319,853	+	5	120	80.32	-1.80	0.73	0.834907
15508	dm3.chrX	19,319,893 – 19,320,013	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21383	19,319,893 – 19,320,013	+	3	120	79.17	-2.12	0.72	0.912562
15509	dm3.chrX	19,322,713 – 19,322,771	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21384	19,322,713 – 19,322,771	+	5	58	96.69	-0.86	1.00	0.631360
15510	dm3.chrX	19,327,028 – 19,327,137	- - - intron="intron;ID=intron_FBgn0031016:3_FBgn0031016:4;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21385	19,327,028 – 19,327,137	-	4	114	74.14	-0.89	0.74	0.602102
15511	dm3.chrX	19,327,343 – 19,327,433	- - - intron="intron;ID=intron_FBgn0031016:4_FBgn0031016:5;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21386	19,327,343 – 19,327,433	+	4	104	72.49	-1.85	0.54	0.749424
15512	dm3.chrX	19,330,844 – 19,330,974	- - - intron="intron;ID=intron_FBgn0031016:4_FBgn0031016:5;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21387	19,330,844 – 19,330,964	+	3	120	80.06	-2.84	0.83	0.995231
15512	dm3.chrX	19,330,844 – 19,330,974		21388	19,330,884 – 19,330,974	+	3	96	87.94	-1.87	0.98	0.976041
15513	dm3.chrX	19,339,603 – 19,339,705	- - - intron="intron;ID=intron_FBgn0031016:4_FBgn0031016:5;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21389	19,339,603 – 19,339,705	+	4	114	83.54	-1.61	0.73	0.515787
15514	dm3.chrX	19,342,263 – 19,342,347	- - - intron="intron;ID=intron_FBgn0031016:5_FBgn0031016:6;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21390	19,342,263 – 19,342,347	-	10	94	75.13	-1.67	0.45	0.610419
15515	dm3.chrX	19,345,594 – 19,345,700	- - - intron="intron;ID=intron_FBgn0031016:5_FBgn0031016:6;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21391	19,345,594 – 19,345,700	+	3	108	77.02	-1.90	0.63	0.707560
15515	dm3.chrX	19,345,594 – 19,345,700		21392	19,345,594 – 19,345,700	-	3	108	77.02	-1.74	0.68	0.724374
15516	dm3.chrX	19,351,344 – 19,351,522	- - - intron="intron;ID=intron_FBgn0031016:5_FBgn0031016:6;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21393	19,351,344 – 19,351,435	-	3	91	86.84	-0.96	0.94	0.600043
15516	dm3.chrX	19,351,344 – 19,351,522		21394	19,351,429 – 19,351,522	+	4	100	73.91	-2.12	0.46	0.695781
15517	dm3.chrX	19,352,471 – 19,352,580	- - - intron="intron;ID=intron_FBgn0031016:5_FBgn0031016:6;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21395	19,352,471 – 19,352,580	-	3	120	76.50	-1.16	0.82	0.667993
15518	dm3.chrX	19,353,538 – 19,353,744	- - - intron="intron;ID=intron_FBgn0031016:5_FBgn0031016:6;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21396	19,353,538 – 19,353,635	-	3	104	90.07	-2.19	0.79	0.794529
				21397	19,353,561 – 19,353,665	+	5	120	89.96	-1.67	0.83	0.640400
				21398	19,353,561 – 19,353,665	-	5	120	89.96	-2.24	0.95	0.984891
				21399	19,353,600 – 19,353,705	+	5	120	89.25	-1.90	0.85	0.864451
				21400	19,353,600 – 19,353,705	-	5	120	89.25	-2.94	0.83	0.989256
				21401	19,353,635 – 19,353,744	+	5	120	89.38	-1.75	0.79	0.602277
15519	dm3.chrX	19,354,290 – 19,354,381	- - - intron="intron;ID=intron_FBgn0031016:5_FBgn0031016:6;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21402	19,354,290 – 19,354,381	-	5	95	68.60	-0.90	0.57	0.653525
15520	dm3.chrX	19,355,258 – 19,355,349	- - - intron="intron;ID=intron_FBgn0031016:5_FBgn0031016:6;Name=kek5-in;Parent=FBtr0074707,FBtr0074708;parent_type=mRNA" - - - -	21403	19,355,258 – 19,355,349	+	3	120	58.61	-0.87	0.59	0.670885
15521	dm3.chrX	19,367,014 – 19,367,139	- - - - - - - -	21404	19,367,014 – 19,367,139	-	4	133	69.08	-1.37	0.49	0.553169
15522	dm3.chrX	19,378,383 – 19,378,483	- - - - - - - -	21405	19,378,383 – 19,378,483	+	5	100	60.99	-0.80	0.48	0.647595
15523	dm3.chrX	19,389,567 – 19,389,645	- - - intron="intron;ID=intron_CG3400:1_CG3400:2;Name=Pfrx-in;Parent=FBtr0074713;parent_type=mRNA" - - - -	21406	19,389,567 – 19,389,645	+	7	106	73.19	-2.46	0.51	0.976429
15523	dm3.chrX	19,389,567 – 19,389,645		21407	19,389,567 – 19,389,645	-	7	106	73.19	-2.03	0.50	0.886019
15524	dm3.chrX	19,394,931 – 19,395,125	- - - intron="intron;ID=intron_CG3400:5_CG3400:6;Name=Pfrx-in;Parent=FBtr0074716;parent_type=mRNA" - - - -	21408	19,394,931 – 19,395,047	+	3	116	73.17	-1.70	0.70	0.855151
15524	dm3.chrX	19,394,931 – 19,395,125		21409	19,395,008 – 19,395,125	+	5	120	88.13	-1.85	0.78	0.715715
15525	dm3.chrX	19,395,424 – 19,395,518	- - - intron="intron;ID=intron_CG3400:5_CG3400:6;Name=Pfrx-in;Parent=FBtr0074716;parent_type=mRNA" - - - -	21410	19,395,424 – 19,395,518	-	6	120	70.29	-0.94	0.63	0.579053
15526	dm3.chrX	19,395,943 – 19,396,051	- - - intron="intron;ID=intron_CG3400:5_CG3400:6;Name=Pfrx-in;Parent=FBtr0074716;parent_type=mRNA" - - - -	21411	19,395,943 – 19,396,038	+	4	95	71.60	-1.31	0.63	0.583041
				21412	19,395,943 – 19,396,038	-	4	95	71.60	-1.42	0.63	0.682041
				21413	19,395,950 – 19,396,051	+	3	101	70.92	-1.48	0.63	0.592117
				21414	19,395,950 – 19,396,051	-	3	101	70.92	-2.12	0.57	0.878162
15527	dm3.chrX	19,396,424 – 19,396,498	- - - intron="intron;ID=intron_CG3400:5_CG3400:6;Name=Pfrx-in;Parent=FBtr0074716;parent_type=mRNA" - - - -	21415	19,396,424 – 19,396,498	+	4	86	66.12	-1.54	0.49	0.842053
15527	dm3.chrX	19,396,424 – 19,396,498		21416	19,396,424 – 19,396,498	-	4	86	66.12	-2.26	0.45	0.973885
15528	dm3.chrX	19,397,729 – 19,397,840	- - - intron="intron;ID=intron_CG3400:5_CG3400:6;Name=Pfrx-in;Parent=FBtr0074716;parent_type=mRNA" - - - -	21417	19,397,729 – 19,397,840	+	4	111	91.78	-1.87	0.79	0.555683
15529	dm3.chrX	19,415,048 – 19,415,142	- - - intron="intron;ID=intron_CG12233:6_CG12233:2;Name=l(1)G0156-in;Parent=FBtr0074781;parent_type=mRNA" - - - -	21418	19,415,048 – 19,415,142	+	7	104	60.77	-0.73	0.46	0.828534
15530	dm3.chrX	19,424,849 – 19,424,969	- - - - - - - -	21419	19,424,849 – 19,424,969	-	3	120	89.64	-2.00	0.93	0.958241
15531	dm3.chrX	19,427,102 – 19,427,188	- - - - - - - -	21420	19,427,102 – 19,427,188	+	11	102	64.36	-3.48	0.17	0.991488
15531	dm3.chrX	19,427,102 – 19,427,188	- - - - - - - -	21421	19,427,102 – 19,427,188	-	11	102	64.36	-5.46	0.23	0.999939
15532	dm3.chrX	19,441,642 – 19,441,750	- - - - - - - -	21422	19,441,642 – 19,441,750	+	5	116	66.19	-1.22	0.41	0.507785
15533	dm3.chrX	19,442,497 – 19,442,565	- - - - - - - -	21423	19,442,497 – 19,442,565	+	3	68	58.42	-2.21	0.88	0.997883
15533	dm3.chrX	19,442,497 – 19,442,565	- - - - - - - -	21424	19,442,497 – 19,442,565	-	3	68	58.42	-1.88	0.96	0.993978
15534	dm3.chrX	19,442,709 – 19,442,796	- - - - - - - -	21425	19,442,709 – 19,442,796	+	8	97	83.53	-2.53	0.63	0.949975
15535	dm3.chrX	19,443,398 – 19,443,471	- - - - - - - -	21426	19,443,398 – 19,443,471	-	5	73	88.15	-1.52	0.91	0.872653
15536	dm3.chrX	19,445,332 – 19,445,441	- - - - - - - -	21427	19,445,332 – 19,445,441	+	3	113	89.32	-4.01	0.91	0.998722
15537	dm3.chrX	19,447,151 – 19,447,216	- - - - - - - -	21428	19,447,151 – 19,447,216	-	4	65	95.13	-1.70	0.85	0.520639
15538	dm3.chrX	19,452,097 – 19,452,164	- - - - - - - -	21429	19,452,097 – 19,452,164	+	5	74	72.64	-2.30	0.62	0.991093
15538	dm3.chrX	19,452,097 – 19,452,164	- - - - - - - -	21430	19,452,097 – 19,452,164	-	5	74	72.64	-1.13	0.64	0.702556
15539	dm3.chrX	19,452,781 – 19,452,883	FBnoncoding="pre_miRNA;ID=FBtr0304294;Name=mir-975-RM;Parent=FBgn0262228;Alias=CR42935-RM;Dbxref=FlyBase_Annotation_IDs:CR42935-RM,miRBase:MI0005832" - - - - - - "mirBase_v16=dme-mir-975\|4.1e-47"	21431	19,452,781 – 19,452,883	+	8	107	70.56	-3.33	0.44	0.999454
15540	dm3.chrX	19,452,934 – 19,453,035	FBnoncoding="pre_miRNA;ID=FBtr0304532;Name=mir-976-RM;Parent=FBgn0262341;Alias=CR43048-RM;Dbxref=FlyBase_Annotation_IDs:CR43048-RM,miRBase:MI0005833" - - - - - - "mirBase_v16=dme-mir-976\|1.6e-46"	21432	19,452,934 – 19,453,035	+	9	120	65.63	-3.53	0.56	0.999940
15540	dm3.chrX	19,452,934 – 19,453,035		21433	19,452,934 – 19,453,035	-	9	120	65.63	-3.11	0.27	0.990755
15541	dm3.chrX	19,455,269 – 19,455,364	FBnoncoding="pre_miRNA;ID=FBtr0304474;Name=mir-978-RM;Parent=FBgn0262314;Alias=CR43021-RM;Dbxref=FlyBase_Annotation_IDs:CR43021-RM,miRBase:MI0005835" - - - - - - "mirBase_v16=dme-mir-978\|3.8e-47"	21434	19,455,269 – 19,455,364	+	8	103	71.84	-2.06	0.55	0.991674
15541	dm3.chrX	19,455,269 – 19,455,364		21435	19,455,269 – 19,455,364	-	8	103	71.84	-1.73	0.47	0.918469
15542	dm3.chrX	19,460,148 – 19,460,200	- - - intron="intron;ID=intron_FBgn0000257:1_FBgn0000257:3;Name=car-in;Parent=FBtr0074727;parent_type=mRNA" - - - -	21436	19,460,148 – 19,460,200	-	3	52	89.68	-2.63	0.81	0.957430
15543	dm3.chrX	19,469,618 – 19,469,723	- - CDS="CDS;ID=CDS_FBgn0031030:13_980;Name=Tao-1-cds;Parent=FBtr0074771,FBtr0303999;parent_type=mRNA" - - - - -	21437	19,469,618 – 19,469,723	+	9	111	61.68	-2.30	0.25	0.939031
15544	dm3.chrX	19,472,053 – 19,472,138	- - - intron="intron;ID=intron_FBgn0031030:17_FBgn0031030:16;Name=Tao-1-in;Parent=FBtr0074771,FBtr0303999;parent_type=mRNA" - - - -	21438	19,472,053 – 19,472,138	+	6	88	69.46	-0.81	0.54	0.632439
15545	dm3.chrX	19,472,348 – 19,472,432	- - - intron="intron;ID=intron_FBgn0031030:17_FBgn0031030:16;Name=Tao-1-in;Parent=FBtr0074771,FBtr0303999;parent_type=mRNA" - - - -	21439	19,472,348 – 19,472,432	-	5	87	54.77	-1.71	0.24	0.710975
15546	dm3.chrX	19,472,684 – 19,472,783	- - - intron="intron;ID=intron_FBgn0031030:17_FBgn0031030:16;Name=Tao-1-in;Parent=FBtr0074771,FBtr0303999;parent_type=mRNA" - - - -	21440	19,472,684 – 19,472,776	-	5	92	87.61	-1.81	0.81	0.807574
15546	dm3.chrX	19,472,684 – 19,472,783		21441	19,472,687 – 19,472,783	-	5	96	87.71	-1.84	0.74	0.608629
15547	dm3.chrX	19,477,083 – 19,477,144	- - - - - - - -	21442	19,477,083 – 19,477,144	-	6	77	74.38	-1.50	0.58	0.668443
15548	dm3.chrX	19,491,712 – 19,491,816	- - - - - - - -	21443	19,491,712 – 19,491,816	+	5	104	74.90	-2.06	0.55	0.925676
15548	dm3.chrX	19,491,712 – 19,491,816	- - - - - - - -	21444	19,491,712 – 19,491,816	-	5	104	74.90	-1.99	0.53	0.877747
15549	dm3.chrX	19,495,260 – 19,495,377	- - CDS="CDS;ID=CDS_CG14220:3_903;Name=CG14220-cds;Parent=FBtr0074768;parent_type=mRNA" - - - - -	21445	19,495,260 – 19,495,377	+	14	117	74.57	-1.66	0.36	0.603820
15550	dm3.chrX	19,500,304 – 19,500,382	- - - intron="intron;ID=intron_CG14207:1_CG14207:5;Name=CG14207-in;Parent=FBtr0074734;parent_type=mRNA" - - - -	21446	19,500,304 – 19,500,382	-	5	88	87.20	-1.79	0.98	0.976935
15551	dm3.chrX	19,501,860 – 19,501,928	- - - intron="intron;ID=intron_CG14207:1_CG14207:5;Name=CG14207-in;Parent=FBtr0074734;parent_type=mRNA" - - - -	21447	19,501,860 – 19,501,928	-	4	68	84.34	-1.57	0.76	0.559927
15552	dm3.chrX	19,526,026 – 19,526,140	- - - intron="intron;ID=intron_CG12238:4_CG12238:5;Name=e(y)3-in;Parent=FBtr0074762;parent_type=mRNA" - - - -	21448	19,526,026 – 19,526,140	-	5	134	63.37	-1.84	0.37	0.859364
15553	dm3.chrX	19,535,401 – 19,535,521	- - - - - - - -	21449	19,535,401 – 19,535,521	-	5	120	83.92	-1.52	0.77	0.694476
15554	dm3.chrX	19,539,982 – 19,540,033	- - - - - - - -	21450	19,539,982 – 19,540,033	-	4	51	68.85	-1.43	0.46	0.528783
15555	dm3.chrX	19,559,894 – 19,560,041	- - - - - - - -	21451	19,559,894 – 19,560,041	+	5	153	71.68	-3.16	0.42	0.995763
15556	dm3.chrX	19,561,160 – 19,561,214	- - - - - - - -	21452	19,561,160 – 19,561,214	-	5	54	96.11	-2.20	0.97	0.978197
15557	dm3.chrX	19,561,671 – 19,561,783	- - - intron="intron;ID=intron_CG12529:1_CG12529:2;Name=Zw-in;Parent=FBtr0074748;parent_type=mRNA" - - - -	21453	19,561,671 – 19,561,783	-	4	118	92.12	-1.61	0.94	0.893816
15558	dm3.chrX	19,561,860 – 19,561,950	- - - intron="intron;ID=intron_CG12529:1_CG12529:2;Name=Zw-in;Parent=FBtr0074748;parent_type=mRNA" - - - -	21454	19,561,860 – 19,561,950	-	4	93	90.13	-1.67	0.81	0.567245
15559	dm3.chrX	19,570,367 – 19,570,466	- - - - - - - -	21455	19,570,367 – 19,570,466	+	6	103	66.62	-1.63	0.36	0.688019
15560	dm3.chrX	19,575,355 – 19,575,501	- - - intron="intron;ID=intron_CG14226:1_CG14226:2;Name=dome-in;Parent=FBtr0074756;parent_type=mRNA" - - - -	21456	19,575,355 – 19,575,501	+	4	148	68.95	-1.60	0.54	0.888653
15560	dm3.chrX	19,575,355 – 19,575,501		21457	19,575,355 – 19,575,501	-	4	148	68.95	-1.48	0.56	0.872003
15561	dm3.chrX	19,577,775 – 19,577,845	- - - - - - - -	21458	19,577,775 – 19,577,845	+	7	70	73.88	-1.15	0.57	0.657327
15562	dm3.chrX	19,583,944 – 19,584,100	- - - - - - - -	21459	19,583,944 – 19,584,100	-	5	156	62.74	-1.80	0.28	0.589910
15563	dm3.chrX	19,594,993 – 19,595,085	- - CDS="CDS;ID=CDS_CG14231:2_917;Name=CG14231-cds;Parent=FBtr0074814;parent_type=mRNA" - - - - -	21460	19,594,993 – 19,595,085	+	13	96	70.40	-0.73	0.46	0.519089
15564	dm3.chrX	19,615,580 – 19,615,694	- - - intron="intron;ID=intron_FBgn0031064:1_FBgn0031064:2;Name=CG12531-in;Parent=FBtr0074788;parent_type=mRNA" - - - -	21461	19,615,580 – 19,615,694	-	4	120	82.19	-1.69	0.79	0.841399
15565	dm3.chrX	19,630,780 – 19,630,911	- - - intron="intron;ID=intron_CG14234:1_CG14234:2;Name=CG14234-in;Parent=FBtr0074790;parent_type=mRNA" - - - -	21462	19,630,780 – 19,630,872	+	5	122	53.48	-1.78	0.29	0.788345
				21463	19,630,804 – 19,630,911	+	5	111	59.26	-0.96	0.42	0.693231
				21464	19,630,804 – 19,630,911	-	5	111	59.26	-1.62	0.40	0.949528
15566	dm3.chrX	19,631,684 – 19,631,839	- - - - - - - -	21465	19,631,684 – 19,631,799	-	4	118	57.10	-0.63	0.46	0.579363
15566	dm3.chrX	19,631,684 – 19,631,839	- - - - - - - -	21466	19,631,720 – 19,631,839	-	10	120	73.88	-1.20	0.51	0.758399
15567	dm3.chrX	19,642,744 – 19,642,837	- - - - - - - -	21467	19,642,744 – 19,642,837	+	6	111	64.41	-1.50	0.37	0.641160
15568	dm3.chrX	19,646,757 – 19,646,863	- - - intron="intron;ID=intron_CG12703:2_CG12703:3;Name=CG12703-in;Parent=FBtr0074795;parent_type=mRNA" - - - -	21468	19,646,757 – 19,646,863	+	3	112	61.18	-2.95	0.32	0.967583
15568	dm3.chrX	19,646,757 – 19,646,863		21469	19,646,757 – 19,646,863	-	3	112	61.18	-3.05	0.29	0.956263
15569	dm3.chrX	19,647,327 – 19,647,417	- - - intron="intron;ID=intron_CG12703:2_CG12703:3;Name=CG12703-in;Parent=FBtr0074795;parent_type=mRNA" - - - -	21470	19,647,327 – 19,647,417	+	3	90	79.37	-1.31	0.91	0.857431
15570	dm3.chrX	19,647,774 – 19,647,877	- - - intron="intron;ID=intron_CG12703:2_CG12703:3;Name=CG12703-in;Parent=FBtr0074795;parent_type=mRNA" - - - -	21471	19,647,774 – 19,647,877	+	3	103	89.32	-2.85	0.79	0.972837
15570	dm3.chrX	19,647,774 – 19,647,877		21472	19,647,774 – 19,647,877	-	3	103	89.32	-2.22	0.71	0.596256
15571	dm3.chrX	19,648,274 – 19,648,365	- - - intron="intron;ID=intron_CG12703:2_CG12703:3;Name=CG12703-in;Parent=FBtr0074795;parent_type=mRNA" - - - -	21473	19,648,274 – 19,648,365	-	3	91	88.68	-1.20	0.97	0.828420
15572	dm3.chrX	19,649,603 – 19,649,735	- - - intron="intron;ID=intron_CG12703:2_CG12703:3;Name=CG12703-in;Parent=FBtr0074795;parent_type=mRNA" - - - -	21474	19,649,603 – 19,649,703	+	6	109	58.61	-1.32	0.32	0.719443
15572	dm3.chrX	19,649,603 – 19,649,735		21475	19,649,634 – 19,649,735	+	6	116	63.28	-1.42	0.38	0.774248
15573	dm3.chrX	19,657,415 – 19,657,481	- - - - - - - -	21476	19,657,415 – 19,657,481	+	6	66	80.51	-1.47	0.64	0.629197
15573	dm3.chrX	19,657,415 – 19,657,481	- - - - - - - -	21477	19,657,415 – 19,657,481	-	6	66	80.51	-2.23	0.67	0.972903
15574	dm3.chrX	19,666,290 – 19,666,386	- - - - - - - -	21478	19,666,290 – 19,666,386	+	5	96	98.96	-2.05	0.98	0.961121
15574	dm3.chrX	19,666,290 – 19,666,386	- - - - - - - -	21479	19,666,290 – 19,666,386	-	5	96	98.96	-0.97	1.00	0.641166
15575	dm3.chrX	19,671,798 – 19,671,898	- - CDS="CDS;ID=CDS_CG12701:3_936;Name=vfl-cds;Parent=FBtr0074808;parent_type=mRNA" - - - - -	21480	19,671,798 – 19,671,898	-	6	102	56.24	-1.47	0.36	0.956343
15576	dm3.chrX	19,680,188 – 19,680,238	- - - - - - - -	21481	19,680,188 – 19,680,238	+	5	50	91.60	-1.71	0.95	0.936794
15577	dm3.chrX	19,687,593 – 19,687,683	- - - - - - - -	21482	19,687,593 – 19,687,683	+	6	103	83.20	-1.80	0.71	0.767449
15578	dm3.chrX	19,690,338 – 19,690,410	- - - - - - - -	21483	19,690,338 – 19,690,410	+	4	73	87.41	-1.14	0.90	0.622669
15579	dm3.chrX	19,733,274 – 19,733,413	- - - intron="intron;ID=intron_FBgn0261811:4_FBgn0261811:3;Name=pico-in;Parent=FBtr0303996;parent_type=mRNA" - - - -	21484	19,733,274 – 19,733,413	+	6	147	75.63	-1.44	0.59	0.766286
15580	dm3.chrX	19,736,709 – 19,736,808	- - - intron="intron;ID=intron_FBgn0261811:4_FBgn0261811:3;Name=pico-in;Parent=FBtr0303996;parent_type=mRNA" - - - -	21485	19,736,709 – 19,736,808	+	4	103	82.19	-2.25	0.78	0.956110
15580	dm3.chrX	19,736,709 – 19,736,808		21486	19,736,709 – 19,736,808	-	4	103	82.19	-1.97	0.81	0.930269
15581	dm3.chrX	19,738,778 – 19,738,874	- - - intron="intron;ID=intron_FBgn0261811:4_FBgn0261811:3;Name=pico-in;Parent=FBtr0303996;parent_type=mRNA" - - - -	21487	19,738,778 – 19,738,874	+	5	120	68.44	-1.72	0.53	0.901553
15582	dm3.chrX	19,759,929 – 19,760,061	- - - - - - - -	21488	19,759,929 – 19,760,029	+	4	100	67.02	-1.19	0.55	0.631926
15582	dm3.chrX	19,759,929 – 19,760,061	- - - - - - - -	21489	19,759,949 – 19,760,061	+	3	112	78.95	-1.51	0.73	0.529302
15583	dm3.chrX	19,770,781 – 19,770,839	- - - intron="intron;ID=intron_CG32529:2_CG32529:6;Name=CG32529-in;Parent=FBtr0074800;parent_type=mRNA" - - - -	21490	19,770,781 – 19,770,839	+	10	66	62.72	-1.11	0.56	0.989252
15583	dm3.chrX	19,770,781 – 19,770,839		21491	19,770,781 – 19,770,839	-	10	66	62.72	-1.40	0.41	0.952850
15584	dm3.chrX	19,775,060 – 19,775,153	- - - intron="intron;ID=intron_CG32529:2_CG32529:6;Name=CG32529-in;Parent=FBtr0074800;parent_type=mRNA" - - - -	21492	19,775,060 – 19,775,153	-	8	113	54.19	-1.79	0.33	0.979203
15585	dm3.chrX	19,775,494 – 19,775,597	- - - intron="intron;ID=intron_CG32529:2_CG32529:6;Name=CG32529-in;Parent=FBtr0074800;parent_type=mRNA" - - - -	21493	19,775,494 – 19,775,597	+	5	113	52.41	-2.07	0.17	0.654844
15586	dm3.chrX	19,778,751 – 19,778,858	- - - intron="intron;ID=intron_CG32529:2_CG32529:6;Name=CG32529-in;Parent=FBtr0074800;parent_type=mRNA" - - - -	21494	19,778,751 – 19,778,857	+	5	106	88.67	-2.26	0.84	0.952035
				21495	19,778,751 – 19,778,857	-	5	106	88.67	-1.54	0.83	0.626874
				21496	19,778,752 – 19,778,858	+	5	106	88.07	-2.07	0.85	0.936564
15587	dm3.chrX	19,782,353 – 19,782,444	- - - intron="intron;ID=intron_CG32529:3_CG32529:5;Name=CG32529-in;Parent=FBtr0100839;parent_type=mRNA" - - - -	21497	19,782,353 – 19,782,444	+	4	112	54.62	-1.14	0.37	0.653793
15588	dm3.chrX	19,789,971 – 19,790,065	- - - intron="intron;ID=intron_CG32529:4_CG32529:6;Name=CG32529-in;Parent=FBtr0074801;parent_type=mRNA" - - - -	21498	19,789,971 – 19,790,065	+	5	110	76.66	-2.70	0.54	0.982077
15589	dm3.chrX	19,792,135 – 19,792,195	- - - intron="intron;ID=intron_CG32529:4_CG32529:6;Name=CG32529-in;Parent=FBtr0074801;parent_type=mRNA" - - - -	21499	19,792,135 – 19,792,195	+	6	70	60.82	-1.64	0.40	0.959776
15590	dm3.chrX	19,799,942 – 19,800,054	- - - - - - - -	21500	19,799,942 – 19,800,054	+	5	112	93.16	-1.71	0.85	0.639122
15591	dm3.chrX	19,803,922 – 19,804,004	- - - - - - - -	21501	19,803,922 – 19,804,004	+	4	82	79.67	-1.32	0.78	0.707728
15592	dm3.chrX	19,804,390 – 19,804,492	- - CDS="CDS;ID=CDS_CG32821:2_920;Name=CG32821-cds;Parent=FBtr0070037;parent_type=mRNA" - - - - -	21502	19,804,390 – 19,804,492	+	9	120	63.74	-1.05	0.43	0.845586
15593	dm3.chrX	19,809,554 – 19,809,656	- - - - - - - -	21503	19,809,554 – 19,809,656	+	9	120	63.74	-1.05	0.43	0.845586
15594	dm3.chrX	19,826,406 – 19,826,513	- - - - - - - -	21504	19,826,406 – 19,826,513	+	5	108	84.01	-2.41	0.51	0.583604
15594	dm3.chrX	19,826,406 – 19,826,513	- - - - - - - -	21505	19,826,406 – 19,826,513	-	5	108	84.01	-2.15	0.66	0.823825
15595	dm3.chrX	19,832,792 – 19,832,912	- - - - - - - -	21506	19,832,792 – 19,832,912	+	4	120	77.64	-1.67	0.66	0.773399
15596	dm3.chrX	19,837,943 – 19,838,063	- - - - - - - -	21507	19,837,943 – 19,838,063	+	4	120	76.25	-1.21	0.67	0.508081
15597	dm3.chrX	19,847,415 – 19,847,495	- - - - - - - -	21508	19,847,415 – 19,847,495	+	4	80	80.62	-1.63	0.70	0.677592
15598	dm3.chrX	19,852,149 – 19,852,238	- - - - - - - -	21509	19,852,149 – 19,852,238	+	4	89	79.59	-1.65	0.67	0.666361
15599	dm3.chrX	19,871,729 – 19,871,849	- - - - - - - -	21510	19,871,729 – 19,871,849	-	5	120	89.31	-2.11	0.83	0.915866
15600	dm3.chrX	19,886,735 – 19,886,842	- - - - - - - -	21511	19,886,735 – 19,886,842	+	7	121	73.21	-2.38	0.68	0.997621
15600	dm3.chrX	19,886,735 – 19,886,842	- - - - - - - -	21512	19,886,735 – 19,886,842	-	7	121	73.21	-3.34	0.63	0.999662
15601	dm3.chrX	19,888,329 – 19,888,394	- - - - - - - -	21513	19,888,329 – 19,888,394	+	5	65	90.89	-3.66	0.97	0.998742
15601	dm3.chrX	19,888,329 – 19,888,394	- - - - - - - -	21514	19,888,329 – 19,888,394	-	5	65	90.89	-2.13	0.84	0.908873
15602	dm3.chrX	19,889,159 – 19,889,213	- - - - - - - -	21515	19,889,159 – 19,889,213	+	5	55	91.91	-1.82	0.83	0.705837
15603	dm3.chrX	19,889,271 – 19,889,351	- - - - - - - -	21516	19,889,271 – 19,889,351	+	10	80	83.57	-2.43	0.78	0.992952
15603	dm3.chrX	19,889,271 – 19,889,351	- - - - - - - -	21517	19,889,271 – 19,889,351	-	10	80	83.57	-2.91	0.71	0.996881
15604	dm3.chrX	19,891,545 – 19,891,716	- - - - - - - -	21518	19,891,545 – 19,891,716	-	6	178	54.61	-2.42	0.17	0.833653
15605	dm3.chrX	19,895,112 – 19,895,221	- - CDS="CDS;ID=CDS_CG17003:1_896;Name=CG17003-cds;Parent=FBtr0070035;parent_type=mRNA" - - - - -	21519	19,895,112 – 19,895,221	-	5	112	57.99	-1.62	0.26	0.531928
15606	dm3.chrX	19,900,239 – 19,900,310	- - - - - - - -	21520	19,900,239 – 19,900,310	-	5	71	72.29	-1.94	0.40	0.632434
15607	dm3.chrX	19,900,543 – 19,900,641	- - - - - - - -	21521	19,900,543 – 19,900,641	-	7	111	66.65	-1.21	0.44	0.745144
15608	dm3.chrX	19,909,410 – 19,909,506	- - - - - - - -	21522	19,909,410 – 19,909,506	+	10	117	67.30	-0.63	0.51	0.506575
15609	dm3.chrX	19,912,717 – 19,912,868	- - - - - - - -	21523	19,912,717 – 19,912,868	-	4	155	86.15	-1.21	0.89	0.672636
15610	dm3.chrX	19,915,601 – 19,915,713	- - - - - - - -	21524	19,915,601 – 19,915,713	+	4	120	91.52	-2.04	0.81	0.762859
15611	dm3.chrX	19,924,808 – 19,924,916	- - - - - - - -	21525	19,924,808 – 19,924,916	+	3	120	77.50	-2.27	0.60	0.857791
15612	dm3.chrX	19,947,617 – 19,947,697	- - - - - - - -	21526	19,947,617 – 19,947,697	+	4	84	79.27	-1.64	0.80	0.904036
15613	dm3.chrX	19,958,452 – 19,958,526	- - - - - - - -	21527	19,958,452 – 19,958,526	-	3	74	80.91	-1.82	0.66	0.512571
15614	dm3.chrX	19,959,951 – 19,960,054	- - - - - - - -	21528	19,959,951 – 19,960,054	+	4	116	83.23	-1.55	0.75	0.572975
15615	dm3.chrX	19,964,158 – 19,964,259	- - - - - - - -	21529	19,964,158 – 19,964,259	-	9	109	85.88	-1.66	0.71	0.637027
15616	dm3.chrX	19,970,294 – 19,970,438	- - - - - - - -	21530	19,970,294 – 19,970,404	-	3	118	82.49	-2.58	0.68	0.935636
15616	dm3.chrX	19,970,294 – 19,970,438	- - - - - - - -	21531	19,970,334 – 19,970,438	-	3	118	78.51	-2.20	0.70	0.920853
15617	dm3.chrX	19,983,742 – 19,983,878	- - - - - - - -	21532	19,983,742 – 19,983,850	+	5	120	91.13	-2.15	0.85	0.915672
15617	dm3.chrX	19,983,742 – 19,983,878	- - - - - - - -	21533	19,983,776 – 19,983,878	+	5	120	87.82	-1.70	0.81	0.700354
15618	dm3.chrX	19,997,703 – 19,997,755	- - - - - - - -	21534	19,997,703 – 19,997,755	+	5	62	60.89	-1.24	0.39	0.627658
15619	dm3.chrX	20,012,017 – 20,012,092	- - - - - - - -	21535	20,012,017 – 20,012,092	-	4	75	90.44	-2.97	0.79	0.981578
15620	dm3.chrX	20,014,508 – 20,014,620	- - - - - - - -	21536	20,014,508 – 20,014,620	-	6	119	70.09	-1.02	0.50	0.582690
15621	dm3.chrX	20,040,257 – 20,040,354	- - - - - - - -	21537	20,040,257 – 20,040,354	-	3	97	76.92	-1.87	0.68	0.756665
15622	dm3.chrX	20,047,031 – 20,047,143	- - - intron="intron;ID=intron_FBgn0031089:6_FBgn0031089:7;Name=CG9572-in;Parent=FBtr0070006,FBtr0303256,FBtr0303257;parent_type=mRNA" - - - -	21538	20,047,031 – 20,047,143	+	6	120	88.51	-2.19	0.75	0.861447
15622	dm3.chrX	20,047,031 – 20,047,143		21539	20,047,031 – 20,047,143	-	6	120	88.51	-2.45	0.79	0.958968
15623	dm3.chrX	20,052,721 – 20,052,841	- - - intron="intron;ID=intron_FBgn0031090:4_FBgn0031090:3;Name=Rab35-in;Parent=FBtr0070028,FBtr0303258;parent_type=mRNA" - - - -	21540	20,052,721 – 20,052,841	+	6	135	65.76	-1.27	0.42	0.720842
15624	dm3.chrX	20,054,694 – 20,054,783	- - - - - - - -	21541	20,054,694 – 20,054,783	-	3	100	85.00	-2.87	0.81	0.989187
15625	dm3.chrX	20,054,947 – 20,055,043	- - CDS="CDS;ID=CDS_CG9576:3_901;Name=CG9576-cds;Parent=FBtr0070027;parent_type=mRNA" - - - - -	21542	20,054,947 – 20,055,043	-	6	96	66.43	-1.56	0.33	0.614273
15626	dm3.chrX	20,067,580 – 20,067,674	- - - - - - - -	21543	20,067,580 – 20,067,674	-	6	120	59.88	-1.32	0.56	0.990769
15627	dm3.chrX	20,075,404 – 20,075,474	- - - - - - - -	21544	20,075,404 – 20,075,474	-	6	79	47.99	-0.52	0.35	0.523319
15628	dm3.chrX	20,102,159 – 20,102,300	- - - intron="intron;ID=intron_CG18000:6_CG18000:43;Name=sw-in;Parent=FBtr0089402;parent_type=mRNA" - - - -	21545	20,102,159 – 20,102,300	-	5	154	78.55	-1.50	0.77	0.869621
15629	dm3.chrX	20,104,862 – 20,104,972	- - - intron="intron;ID=intron_CG18000:24_CG18000:5;Name=sw-in;Parent=FBtr0089406;parent_type=mRNA" - - - -	21546	20,104,862 – 20,104,972	+	3	120	68.18	-1.64	0.62	0.884695
15630	dm3.chrX	20,107,432 – 20,107,578	- - - - - - - -	21547	20,107,432 – 20,107,578	+	6	158	69.55	-1.86	0.44	0.930699
15631	dm3.chrX	20,128,420 – 20,128,498	- - - - - - - -	21548	20,128,420 – 20,128,498	-	6	78	66.99	-1.50	0.46	0.941370
15632	dm3.chrX	20,131,574 – 20,131,666	- - - - - - - -	21549	20,131,574 – 20,131,666	-	8	114	82.74	-1.25	0.86	0.777931
15633	dm3.chrX	20,133,682 – 20,133,797	- - - - - - - -	21550	20,133,682 – 20,133,797	+	5	116	71.79	-1.55	0.49	0.664902
15634	dm3.chrX	20,134,900 – 20,135,016	- - - - - - - -	21551	20,134,900 – 20,135,016	-	4	120	80.70	-1.69	0.70	0.683262
15635	dm3.chrX	20,142,342 – 20,142,480	- - - - - - - -	21552	20,142,342 – 20,142,456	-	3	114	75.39	-1.90	0.63	0.690778
15635	dm3.chrX	20,142,342 – 20,142,480	- - - - - - - -	21553	20,142,376 – 20,142,480	-	3	104	83.33	-2.26	0.60	0.509531
15636	dm3.chrX	20,149,112 – 20,149,206	- - - - - - - -	21554	20,149,112 – 20,149,206	-	4	121	65.78	-2.20	0.37	0.805345
15637	dm3.chrX	20,149,453 – 20,149,588	- - - - - - - -	21555	20,149,453 – 20,149,553	+	4	113	52.02	-1.63	0.39	0.970875
				21556	20,149,453 – 20,149,553	-	4	113	52.02	-1.36	0.40	0.937765
				21557	20,149,487 – 20,149,588	+	4	110	53.69	-1.29	0.44	0.967187
				21558	20,149,487 – 20,149,588	-	4	110	53.69	-1.51	0.35	0.908593
15638	dm3.chrX	20,149,799 – 20,149,905	- - - - - - - -	21559	20,149,799 – 20,149,905	-	8	121	66.64	-2.12	0.39	0.976263
15639	dm3.chrX	20,150,644 – 20,150,710	- - - - - - - -	21560	20,150,644 – 20,150,710	+	4	68	86.14	-1.50	0.86	0.773741
15640	dm3.chrX	20,167,534 – 20,167,626	- - - - - - - -	21561	20,167,534 – 20,167,626	+	5	113	62.16	-1.28	0.39	0.538929
15641	dm3.chrX	20,177,441 – 20,177,533	- - - - - - - -	21562	20,177,441 – 20,177,533	+	5	113	62.16	-1.28	0.39	0.538929
15642	dm3.chrX	20,185,667 – 20,185,767	- - - - - - - -	21563	20,185,667 – 20,185,767	+	4	108	62.30	-2.21	0.44	0.986115
15643	dm3.chrX	20,187,916 – 20,187,985	- - - - - - - -	21564	20,187,916 – 20,187,985	+	7	83	67.60	-0.95	0.61	0.878504
15644	dm3.chrX	20,190,256 – 20,190,382	- - - - - - - -	21565	20,190,256 – 20,190,348	+	4	108	66.61	-2.34	0.29	0.519152
15644	dm3.chrX	20,190,256 – 20,190,382	- - - - - - - -	21566	20,190,292 – 20,190,382	+	4	108	61.95	-3.13	0.24	0.942239
15645	dm3.chrX	20,193,810 – 20,193,906	- - - - - - - -	21567	20,193,810 – 20,193,906	-	8	96	95.65	-2.70	0.86	0.970709
15646	dm3.chrX	20,194,459 – 20,194,574	- - - - - - - -	21568	20,194,459 – 20,194,574	+	5	115	84.99	-2.28	0.83	0.975786
15647	dm3.chrX	20,196,183 – 20,196,279	- - - - - - - -	21569	20,196,183 – 20,196,279	-	8	111	71.58	-1.06	0.63	0.834629
15648	dm3.chrX	20,204,998 – 20,205,107	- - - - - - - -	21570	20,204,998 – 20,205,107	-	7	120	70.73	-1.15	0.46	0.506850
15649	dm3.chrX	20,209,377 – 20,209,487	- - - - - - - -	21571	20,209,377 – 20,209,487	-	6	110	80.93	-1.75	0.62	0.724381
15650	dm3.chrX	20,211,083 – 20,211,177	- - - - - - - -	21572	20,211,083 – 20,211,177	+	8	118	76.07	-2.28	0.47	0.815205
15651	dm3.chrX	20,212,352 – 20,212,419	- - - - - - - -	21573	20,212,352 – 20,212,419	-	3	74	74.88	-1.45	0.79	0.826599
15652	dm3.chrX	20,213,158 – 20,213,225	- - - - - - - -	21574	20,213,158 – 20,213,225	+	11	68	90.72	-2.61	0.94	0.994146
15652	dm3.chrX	20,213,158 – 20,213,225	- - - - - - - -	21575	20,213,158 – 20,213,225	-	11	68	90.72	-2.24	0.93	0.985244
15653	dm3.chrX	20,231,589 – 20,231,717	- - - - - - - -	21576	20,231,589 – 20,231,717	+	5	128	78.96	-1.55	0.63	0.576947
15653	dm3.chrX	20,231,589 – 20,231,717	- - - - - - - -	21577	20,231,589 – 20,231,717	-	5	128	78.96	-2.03	0.53	0.664798
15654	dm3.chrX	20,235,119 – 20,235,178	- - - - - - - -	21578	20,235,119 – 20,235,178	-	4	64	90.79	-2.01	0.79	0.703439
15655	dm3.chrX	20,238,022 – 20,238,139	- - - - - - - -	21579	20,238,022 – 20,238,139	+	3	117	74.36	-1.07	0.75	0.553028
15655	dm3.chrX	20,238,022 – 20,238,139	- - - - - - - -	21580	20,238,022 – 20,238,139	-	3	117	74.36	-1.66	0.66	0.783377
15656	dm3.chrX	20,241,416 – 20,241,525	- - - - - - - -	21581	20,241,416 – 20,241,525	+	6	115	70.56	-1.02	0.62	0.789157
15657	dm3.chrX	20,243,042 – 20,243,125	- - - - - - - -	21582	20,243,042 – 20,243,125	-	10	83	94.51	-1.44	0.93	0.782941
15658	dm3.chrX	20,251,408 – 20,251,469	- - - - - - - -	21583	20,251,408 – 20,251,469	-	7	64	73.19	-1.08	0.74	0.939880
15659	dm3.chrX	20,257,671 – 20,257,765	- - - - - - - -	21584	20,257,671 – 20,257,765	+	6	106	61.22	-0.78	0.42	0.598003
15660	dm3.chrX	20,262,186 – 20,262,337	- - - - - - - -	21585	20,262,186 – 20,262,297	-	3	111	92.79	-2.78	0.81	0.954877
15660	dm3.chrX	20,262,186 – 20,262,337	- - - - - - - -	21586	20,262,218 – 20,262,337	-	3	119	89.92	-2.40	0.78	0.878453
15661	dm3.chrX	20,265,327 – 20,265,447	- - - - - - - -	21587	20,265,327 – 20,265,447	+	5	120	80.53	-2.08	0.55	0.726093
15662	dm3.chrX	20,282,502 – 20,282,582	- - CDS="CDS;ID=CDS_FBgn0031107:11_973;Name=HERC2-cds;Parent=FBtr0301344;parent_type=mRNA" - - - - -	21588	20,282,502 – 20,282,582	+	11	88	82.11	-1.13	0.81	0.795866
15663	dm3.chrX	20,286,338 – 20,286,393	- - - - - - - -	21589	20,286,338 – 20,286,393	-	5	55	78.00	-1.37	0.63	0.551429
15664	dm3.chrX	20,288,297 – 20,288,375	- - - intron="intron;ID=intron_CG1670:2_CG1670:3;Name=Obp19b-in;Parent=FBtr0077302;parent_type=mRNA" - - - -	21590	20,288,297 – 20,288,375	+	4	78	71.40	-1.51	0.61	0.851731
15665	dm3.chrX	20,291,358 – 20,291,461	- - - intron="intron;ID=intron_CG1668:5_CG1668:2;Name=Pbprp2-in;Parent=FBtr0077304;parent_type=mRNA" - - - -	21591	20,291,358 – 20,291,461	+	4	117	80.00	-1.71	0.66	0.584391
15666	dm3.chrX	20,298,943 – 20,299,054	- - CDS="CDS;ID=CDS_FBgn0031115:2_1004;Name=CG11710-cds;Parent=FBtr0089643;parent_type=mRNA" - - - - -	21592	20,298,943 – 20,299,054	-	13	115	63.60	-1.04	0.38	0.848861
15667	dm3.chrX	20,301,034 – 20,301,126	- - - - - - - -	21593	20,301,034 – 20,301,126	+	3	92	88.15	-2.09	0.83	0.881669
15668	dm3.chrX	20,304,945 – 20,305,011	- - - - - - - -	21594	20,304,945 – 20,305,011	+	4	66	97.73	-1.01	0.98	0.586556
15668	dm3.chrX	20,304,945 – 20,305,011	- - - - - - - -	21595	20,304,945 – 20,305,011	-	4	66	97.73	-1.07	1.00	0.739871
15669	dm3.chrX	20,307,226 – 20,307,326	- - - - - - - -	21596	20,307,226 – 20,307,326	-	5	124	54.44	-1.85	0.34	0.934375
15670	dm3.chrX	20,308,410 – 20,308,463	- - - - - - - -	21597	20,308,410 – 20,308,463	+	5	53	97.36	-1.38	0.96	0.754252
15671	dm3.chrX	20,312,159 – 20,312,253	- - CDS="CDS;ID=CDS_FBgn0031116:3_897;Name=CG1695-cds;Parent=FBtr0077308;parent_type=mRNA" - - - - -	21598	20,312,159 – 20,312,253	+	14	120	78.91	-2.08	0.59	0.936147
15671	dm3.chrX	20,312,159 – 20,312,253		21599	20,312,159 – 20,312,253	-	14	120	78.91	-2.06	0.48	0.724198
15672	dm3.chrX	20,318,442 – 20,318,536	- - - - - - - -	21600	20,318,442 – 20,318,536	-	3	101	88.78	-2.12	0.75	0.681171
15673	dm3.chrX	20,325,255 – 20,325,363	- - - - - - - -	21601	20,325,255 – 20,325,363	-	3	108	89.24	-2.36	0.84	0.941442
15674	dm3.chrX	20,326,191 – 20,326,301	- - - - - - - -	21602	20,326,191 – 20,326,301	+	3	112	47.31	-1.96	0.22	0.648624
15674	dm3.chrX	20,326,191 – 20,326,301	- - - - - - - -	21603	20,326,191 – 20,326,301	-	3	112	47.31	-2.04	0.27	0.904945
15675	dm3.chrX	20,326,782 – 20,326,836	- - - - - - - -	21604	20,326,782 – 20,326,836	+	5	57	89.95	-2.36	0.69	0.701528
15676	dm3.chrX	20,328,033 – 20,328,127	- - - - - - - -	21605	20,328,033 – 20,328,127	-	3	103	91.26	-1.27	0.91	0.584507
15677	dm3.chrX	20,328,737 – 20,328,842	- - - - - - - -	21606	20,328,737 – 20,328,842	-	5	120	80.00	-1.18	0.75	0.500000
15678	dm3.chrX	20,333,822 – 20,333,982	- - CDS="CDS;ID=CDS_FBgn0052506:5_963;Name=CG32506-cds;Parent=FBtr0300211;parent_type=mRNA" - - - - -	21607	20,333,822 – 20,333,923	+	13	115	80.99	-1.61	0.55	0.579237
				21608	20,333,883 – 20,333,982	+	13	112	77.96	-2.79	0.54	0.994303
				21609	20,333,883 – 20,333,982	-	13	112	77.96	-1.99	0.42	0.608338
15679	dm3.chrX	20,337,033 – 20,337,127	- - - - - - - -	21610	20,337,033 – 20,337,127	+	7	119	56.29	-1.87	0.27	0.816876
15680	dm3.chrX	20,339,230 – 20,339,323	- - - intron="intron;ID=intron_FBgn0031117:1_FBgn0031117:3;Name=CG1702-in;Parent=FBtr0300210;parent_type=mRNA" - - - -	21611	20,339,230 – 20,339,323	+	6	101	71.19	-1.34	0.52	0.748008
15681	dm3.chrX	20,350,444 – 20,350,556	- - - intron="intron;ID=intron_FBgn0031118:14_FBgn0031118:13;Name=RhoGAP19D-in;Parent=FBtr0077320,FBtr0301537,FBtr0304906;parent_type=mRNA" - - - -	21612	20,350,444 – 20,350,552	+	3	118	77.33	-1.71	0.67	0.623526
15681	dm3.chrX	20,350,444 – 20,350,556		21613	20,350,446 – 20,350,556	+	3	120	77.71	-1.83	0.67	0.705775
15682	dm3.chrX	20,357,794 – 20,357,920	- - - - - - - -	21614	20,357,794 – 20,357,889	+	4	103	62.41	-1.43	0.41	0.628423
15682	dm3.chrX	20,357,794 – 20,357,920	- - - - - - - -	21615	20,357,827 – 20,357,920	+	4	97	67.55	-2.25	0.34	0.716575
15683	dm3.chrX	20,363,620 – 20,363,704	- - - intron="intron;ID=intron_FBgn0031118:17_FBgn0031118:16;Name=RhoGAP19D-in;Parent=FBtr0077320,FBtr0301537,FBtr0304906;parent_type=mRNA" - - - -	21616	20,363,620 – 20,363,704	-	6	86	79.53	-1.60	0.71	0.889128
15684	dm3.chrX	20,366,141 – 20,366,235	- - - intron="intron;ID=intron_FBgn0031118:17_FBgn0031118:16;Name=RhoGAP19D-in;Parent=FBtr0077320,FBtr0301537,FBtr0304906;parent_type=mRNA" - - - -	21617	20,366,141 – 20,366,235	+	5	94	80.32	-1.26	0.75	0.650065
15685	dm3.chrX	20,382,402 – 20,382,498	- - - - - - - -	21618	20,382,402 – 20,382,498	-	4	99	65.87	-1.60	0.38	0.538689
15686	dm3.chrX	20,383,462 – 20,383,577	- - - intron="intron;ID=intron_CG1812:1_CG1812:2;Name=CG1812-in;Parent=FBtr0077312;parent_type=mRNA" - - - -	21619	20,383,462 – 20,383,577	+	4	120	80.27	-2.16	0.56	0.592486
15687	dm3.chrX	20,395,777 – 20,395,896	- - - - - - - -	21620	20,395,777 – 20,395,896	+	3	119	93.84	-1.77	0.85	0.600835
15688	dm3.chrX	20,400,658 – 20,400,757	- - - - - - - -	21621	20,400,658 – 20,400,757	+	11	119	85.27	-2.14	0.61	0.652302
15689	dm3.chrX	20,410,102 – 20,410,196	- - - intron="intron;ID=intron_FBgn0259162:1_FBgn0259162:2;Name=RunxB-in;Parent=FBtr0299603,FBtr0299604;parent_type=mRNA" - - - -	21622	20,410,102 – 20,410,196	+	8	100	74.59	-1.25	0.49	0.522592
15689	dm3.chrX	20,410,102 – 20,410,196		21623	20,410,102 – 20,410,196	-	8	100	74.59	-1.32	0.48	0.547228
15690	dm3.chrX	20,411,188 – 20,411,325	- - - intron="intron;ID=intron_FBgn0259162:1_FBgn0259162:2;Name=RunxB-in;Parent=FBtr0299603,FBtr0299604;parent_type=mRNA" - - - -	21624	20,411,188 – 20,411,300	-	6	124	74.53	-0.78	0.70	0.622299
				21625	20,411,227 – 20,411,325	+	7	106	67.67	-1.09	0.55	0.938526
				21626	20,411,227 – 20,411,325	-	7	106	67.67	-0.62	0.60	0.837555
15691	dm3.chrX	20,415,343 – 20,415,441	- - - intron="intron;ID=intron_FBgn0259162:3_FBgn0259162:5;Name=RunxB-in;Parent=FBtr0299604;parent_type=mRNA" - - - -	21627	20,415,343 – 20,415,441	-	6	119	76.70	-1.16	0.68	0.598926
15692	dm3.chrX	20,422,212 – 20,422,302	- - - intron="intron;ID=intron_FBgn0259162:3_FBgn0259162:5;Name=RunxB-in;Parent=FBtr0299604;parent_type=mRNA" - - - -	21628	20,422,212 – 20,422,302	+	8	101	81.86	-1.31	0.73	0.599618
15693	dm3.chrX	20,431,114 – 20,431,242	- - - intron="intron;ID=intron_FBgn0259162:4_FBgn0259162:6;Name=RunxB-in;Parent=FBtr0299603;parent_type=mRNA" - - - -	21629	20,431,114 – 20,431,242	-	7	147	55.00	-1.36	0.30	0.792156
15694	dm3.chrX	20,432,024 – 20,432,097	- - - intron="intron;ID=intron_FBgn0259162:4_FBgn0259162:6;Name=RunxB-in;Parent=FBtr0299603;parent_type=mRNA" - - - -	21630	20,432,024 – 20,432,097	-	7	91	60.94	-0.46	0.54	0.642666
15695	dm3.chrX	20,433,559 – 20,433,675	- - - intron="intron;ID=intron_FBgn0259162:4_FBgn0259162:6;Name=RunxB-in;Parent=FBtr0299603;parent_type=mRNA" - - - -	21631	20,433,559 – 20,433,675	-	5	120	74.27	-1.50	0.59	0.755557
15696	dm3.chrX	20,442,771 – 20,442,897	- - - - - - - -	21632	20,442,771 – 20,442,897	+	11	144	78.07	-2.36	0.58	0.982399
15696	dm3.chrX	20,442,771 – 20,442,897	- - - - - - - -	21633	20,442,771 – 20,442,897	-	11	144	78.07	-2.30	0.65	0.989495
15697	dm3.chrX	20,454,033 – 20,454,187	- - - - - - - -	21634	20,454,033 – 20,454,187	+	5	168	68.94	-2.21	0.45	0.973922
15698	dm3.chrX	20,473,190 – 20,473,281	- - - intron="intron;ID=intron_FBgn0083981:5_FBgn0083981:4;Name=RunxA-in;Parent=FBtr0110992;parent_type=mRNA" - - - -	21635	20,473,190 – 20,473,281	+	8	107	58.98	-1.72	0.22	0.529951
15699	dm3.chrX	20,478,475 – 20,478,576	- - - intron="intron;ID=intron_FBgn0083981:6_FBgn0083981:5;Name=RunxA-in;Parent=FBtr0110992;parent_type=mRNA" - - - -	21636	20,478,475 – 20,478,576	+	10	102	84.33	-2.22	0.74	0.973735
15700	dm3.chrX	20,488,446 – 20,488,538	- - - - - - - -	21637	20,488,446 – 20,488,538	-	12	109	82.01	-1.63	0.57	0.508634
15701	dm3.chrX	20,490,688 – 20,490,808	- - - - - - - -	21638	20,490,688 – 20,490,808	+	12	120	94.81	-2.65	0.91	0.986051
15702	dm3.chrX	20,490,862 – 20,490,944	- - - - - - - -	21639	20,490,862 – 20,490,944	+	5	83	94.32	-2.23	0.82	0.832521
15703	dm3.chrX	20,492,109 – 20,492,201	- - - - - - - -	21640	20,492,109 – 20,492,201	+	8	100	88.12	-1.54	0.84	0.761973
15704	dm3.chrX	20,498,380 – 20,498,435	- - - - - - - -	21641	20,498,380 – 20,498,435	-	4	55	86.36	-2.12	0.66	0.616945
15705	dm3.chrX	20,509,184 – 20,509,288	- - - - - - - -	21642	20,509,184 – 20,509,288	-	5	120	80.47	-1.45	0.69	0.524456
15706	dm3.chrX	20,523,788 – 20,523,922	- - - - - - - -	21643	20,523,788 – 20,523,922	+	6	136	83.22	-2.63	0.60	0.943946
15707	dm3.chrX	20,524,919 – 20,524,992	- - - - - - - -	21644	20,524,919 – 20,524,992	+	12	79	84.01	-0.92	0.95	0.823072
15708	dm3.chrX	20,531,052 – 20,531,144	- - CDS="CDS;ID=CDS_FBgn0031126:2_973;Name=Cyp6v1-cds;Parent=FBtr0077276;parent_type=mRNA" - - - - -	21645	20,531,052 – 20,531,144	+	14	96	72.71	-0.96	0.45	0.545606
15709	dm3.chrX	20,536,612 – 20,536,708	- - - - - - - -	21646	20,536,612 – 20,536,708	+	4	100	66.33	-2.29	0.69	0.998008
15709	dm3.chrX	20,536,612 – 20,536,708	- - - - - - - -	21647	20,536,612 – 20,536,708	-	4	100	66.33	-2.25	0.73	0.998031
15710	dm3.chrX	20,536,746 – 20,536,816	- - - - - - - -	21648	20,536,746 – 20,536,816	-	11	82	73.60	-0.81	0.59	0.582546
15711	dm3.chrX	20,538,729 – 20,538,835	- - - - - - - -	21649	20,538,729 – 20,538,835	+	11	107	95.13	-1.52	0.95	0.864722
15712	dm3.chrX	20,554,543 – 20,554,609	- - - - - - - -	21650	20,554,543 – 20,554,609	-	9	73	72.05	-2.07	0.39	0.925198
15713	dm3.chrX	20,562,001 – 20,562,063	- - - - - - - -	21651	20,562,001 – 20,562,063	-	3	64	82.20	-2.11	0.76	0.896063
15714	dm3.chrX	20,571,067 – 20,571,174	- - - - - - - -	21652	20,571,067 – 20,571,174	+	6	121	69.67	-1.16	0.48	0.525331
15715	dm3.chrX	20,578,557 – 20,578,654	- - - - - - - -	21653	20,578,557 – 20,578,654	+	6	100	76.58	-1.11	0.67	0.542486
15716	dm3.chrX	20,593,416 – 20,593,516	- - - - - - - -	21654	20,593,416 – 20,593,516	+	9	112	71.97	-1.81	0.41	0.845988
15717	dm3.chrX	20,594,058 – 20,594,156	- - - - - - - -	21655	20,594,058 – 20,594,156	+	11	102	75.96	-1.67	0.63	0.978553
15717	dm3.chrX	20,594,058 – 20,594,156	- - - - - - - -	21656	20,594,058 – 20,594,156	-	11	102	75.96	-1.64	0.49	0.863496
15718	dm3.chrX	20,600,663 – 20,600,772	- - - - - - - -	21657	20,600,663 – 20,600,772	+	5	120	91.31	-2.57	0.82	0.957506
15719	dm3.chrX	20,607,333 – 20,607,434	- - - - - - - -	21658	20,607,333 – 20,607,434	+	10	118	65.32	-1.90	0.36	0.947205
15720	dm3.chrX	20,615,125 – 20,615,222	- - - - - - - -	21659	20,615,125 – 20,615,222	+	4	120	78.99	-1.80	0.83	0.945515
15721	dm3.chrX	20,625,166 – 20,625,284	- - - - - - - -	21660	20,625,166 – 20,625,284	-	3	118	78.44	-1.43	0.80	0.710445
15722	dm3.chrX	20,629,731 – 20,629,824	- - - - - - - -	21661	20,629,731 – 20,629,824	-	6	100	76.50	-2.02	0.66	0.976252
15723	dm3.chrX	20,631,530 – 20,631,649	- - - - - - - -	21662	20,631,530 – 20,631,649	-	5	120	67.77	-1.93	0.34	0.666335
15724	dm3.chrX	20,641,626 – 20,641,683	- - - - - - - -	21663	20,641,626 – 20,641,683	+	5	57	95.09	-1.15	0.93	0.500000
15725	dm3.chrX	20,643,027 – 20,643,117	- - - - - - - -	21664	20,643,027 – 20,643,117	+	12	116	55.60	-2.01	0.22	0.896473
15725	dm3.chrX	20,643,027 – 20,643,117	- - - - - - - -	21665	20,643,027 – 20,643,117	-	12	116	55.60	-2.29	0.32	0.996393
15726	dm3.chrX	20,645,830 – 20,645,924	- - - intron="intron;ID=intron_FBgn0085387:4_FBgn0085387:3;Name=shakB-in;Parent=FBtr0112569,FBtr0112570,FBtr0112571,FBtr0112572,FBtr0114645;parent_type=mRNA" - - - -	21666	20,645,830 – 20,645,924	-	9	101	82.35	-2.07	0.51	0.603478
15727	dm3.chrX	20,646,305 – 20,646,480	- - - intron="intron;ID=intron_FBgn0085387:4_FBgn0085387:3;Name=shakB-in;Parent=FBtr0112569,FBtr0112570,FBtr0112571,FBtr0112572,FBtr0114645;parent_type=mRNA" - - - -	21667	20,646,305 – 20,646,480	+	5	190	73.41	-1.81	0.47	0.718729
15728	dm3.chrX	20,646,510 – 20,646,595	- - CDS="CDS;ID=CDS_FBgn0085387:4_954;Name=shakB-cds;Parent=FBtr0112569,FBtr0112570,FBtr0112571;parent_type=mRNA" - - - - -	21668	20,646,510 – 20,646,595	+	15	85	82.94	-2.09	0.58	0.925340
15728	dm3.chrX	20,646,510 – 20,646,595		21669	20,646,510 – 20,646,595	-	15	85	82.94	-2.01	0.61	0.931722
15729	dm3.chrX	20,646,726 – 20,646,840	- - - intron="intron;ID=intron_FBgn0085387:5_FBgn0085387:4;Name=shakB-in;Parent=FBtr0112569,FBtr0112570,FBtr0112571,FBtr0112572,FBtr0114645;parent_type=mRNA" - - - -	21670	20,646,726 – 20,646,840	+	4	114	89.33	-2.04	0.75	0.665225
15730	dm3.chrX	20,658,835 – 20,658,927	- - - - - - - -	21671	20,658,835 – 20,658,927	-	7	100	72.89	-1.21	0.54	0.506929
15731	dm3.chrX	20,684,732 – 20,684,833	- - - intron="intron;ID=intron_FBgn0085387:15_FBgn0085387:14;Name=shakB-in;Parent=FBtr0112569;parent_type=mRNA" - - - -	21672	20,684,732 – 20,684,833	-	3	106	86.79	-2.52	0.58	0.515895
15732	dm3.chrX	20,685,203 – 20,685,300	- - - intron="intron;ID=intron_FBgn0085387:15_FBgn0085387:14;Name=shakB-in;Parent=FBtr0112569;parent_type=mRNA" - - - -	21673	20,685,203 – 20,685,300	+	7	113	74.63	-2.31	0.41	0.819734
15733	dm3.chrX	20,687,288 – 20,687,376	- - - intron="intron;ID=intron_FBgn0085387:15_FBgn0085387:14;Name=shakB-in;Parent=FBtr0112569;parent_type=mRNA" - - - -	21674	20,687,288 – 20,687,376	-	5	88	93.41	-1.39	0.93	0.749045
15734	dm3.chrX	20,687,872 – 20,687,992	- - - intron="intron;ID=intron_FBgn0085387:15_FBgn0085387:14;Name=shakB-in;Parent=FBtr0112569;parent_type=mRNA" - - - -	21675	20,687,872 – 20,687,992	+	5	120	88.83	-1.74	0.80	0.691425
15735	dm3.chrX	20,698,531 – 20,698,592	- - - - - - - -	21676	20,698,531 – 20,698,592	-	6	61	81.20	-1.72	0.82	0.956746
15736	dm3.chrX	20,726,851 – 20,726,901	- - - - - - - -	21677	20,726,851 – 20,726,901	+	5	50	98.80	-1.72	1.02	0.961406
15737	dm3.chrX	20,727,403 – 20,727,513	- - - - - - - -	21678	20,727,403 – 20,727,510	+	10	116	74.88	-1.19	0.54	0.572893
15737	dm3.chrX	20,727,403 – 20,727,513	- - - - - - - -	21679	20,727,404 – 20,727,513	+	10	116	75.36	-1.35	0.58	0.791382
15738	dm3.chrX	20,732,286 – 20,732,392	- - - - - - - -	21680	20,732,286 – 20,732,382	+	10	115	70.36	-2.13	0.32	0.694251
15738	dm3.chrX	20,732,286 – 20,732,392	- - - - - - - -	21681	20,732,293 – 20,732,392	+	10	114	73.89	-2.02	0.35	0.500000
15739	dm3.chrX	20,732,935 – 20,733,031	- - - - - - - -	21682	20,732,935 – 20,733,028	-	12	116	67.96	-1.22	0.41	0.728068
15739	dm3.chrX	20,732,935 – 20,733,031	- - - - - - - -	21683	20,732,941 – 20,733,031	-	11	112	65.06	-0.64	0.50	0.758093
15740	dm3.chrX	20,736,216 – 20,736,332	- - CDS="CDS;ID=CDS_FBgn0262822:1_1032;Name=CG43193-cds;Parent=FBtr0306065;parent_type=mRNA" - - - - -	21684	20,736,216 – 20,736,332	+	3	116	80.35	-2.44	0.59	0.805463
15740	dm3.chrX	20,736,216 – 20,736,332		21685	20,736,216 – 20,736,332	-	3	116	80.35	-2.67	0.74	0.981478
15741	dm3.chrX	20,744,868 – 20,744,959	- - - - - - - -	21686	20,744,868 – 20,744,959	+	5	92	69.69	-2.23	0.34	0.831498
15742	dm3.chrX	20,764,037 – 20,764,163	- - - - - - - -	21687	20,764,037 – 20,764,148	+	11	115	81.03	-2.69	0.51	0.971535
				21688	20,764,037 – 20,764,148	-	11	115	81.03	-1.89	0.50	0.604836
				21689	20,764,055 – 20,764,163	+	12	118	87.47	-3.23	0.60	0.984218
15743	dm3.chrX	20,767,718 – 20,767,803	- - - - - - - -	21690	20,767,718 – 20,767,803	+	5	86	98.36	-2.34	0.79	0.613978
15743	dm3.chrX	20,767,718 – 20,767,803	- - - - - - - -	21691	20,767,718 – 20,767,803	-	5	86	98.36	-2.19	0.84	0.717875
15744	dm3.chrX	20,768,229 – 20,768,293	- - - - - - - -	21692	20,768,229 – 20,768,293	-	5	66	86.68	-1.73	0.79	0.755158
15745	dm3.chrX	20,776,066 – 20,776,161	- - - - - - - -	21693	20,776,066 – 20,776,161	+	5	98	61.12	-1.79	0.31	0.662568
15746	dm3.chrX	20,784,516 – 20,784,652	- - - - - - - -	21694	20,784,516 – 20,784,617	+	5	105	95.22	-2.77	0.81	0.943373
15746	dm3.chrX	20,784,516 – 20,784,652	- - - - - - - -	21695	20,784,544 – 20,784,652	+	5	112	94.80	-2.22	0.85	0.875360
15747	dm3.chrX	20,784,820 – 20,784,996	- - - - - - - -	21696	20,784,820 – 20,784,933	+	4	117	91.45	-2.41	0.86	0.957928
				21697	20,784,820 – 20,784,933	-	4	117	91.45	-1.94	0.77	0.539969
				21698	20,784,880 – 20,784,996	-	4	119	87.09	-1.29	0.87	0.632781
15748	dm3.chrX	20,788,965 – 20,789,068	- - - - - - - -	21699	20,788,965 – 20,789,068	+	6	105	73.37	-1.66	0.45	0.549107
15749	dm3.chrX	20,794,276 – 20,794,372	- - - - - - - -	21700	20,794,276 – 20,794,372	+	7	105	72.84	-1.79	0.64	0.988218
15749	dm3.chrX	20,794,276 – 20,794,372	- - - - - - - -	21701	20,794,276 – 20,794,372	-	7	105	72.84	-1.24	0.65	0.935341
15750	dm3.chrX	20,798,232 – 20,798,375	- - - - - - - -	21702	20,798,232 – 20,798,347	+	10	115	79.52	-3.04	0.81	0.998569
				21703	20,798,232 – 20,798,347	-	10	115	79.52	-2.36	0.75	0.992232
				21704	20,798,267 – 20,798,375	+	10	109	73.89	-2.45	0.62	0.998174
				21705	20,798,267 – 20,798,375	-	10	109	73.89	-1.63	0.66	0.984355
15751	dm3.chrX	20,800,913 – 20,801,003	- - - - - - - -	21706	20,800,913 – 20,801,003	+	4	93	77.54	-2.19	0.64	0.942801
15752	dm3.chrX	20,811,818 – 20,811,893	- - - - - - - -	21707	20,811,818 – 20,811,893	+	3	77	54.59	-1.18	0.47	0.893316
15753	dm3.chrX	20,817,601 – 20,817,656	- - - - - - - -	21708	20,817,601 – 20,817,656	-	5	55	87.64	-1.28	0.85	0.587379
15754	dm3.chrX	20,821,605 – 20,821,673	- - - - - - - -	21709	20,821,605 – 20,821,673	+	5	68	95.88	-2.50	0.86	0.939629
15754	dm3.chrX	20,821,605 – 20,821,673	- - - - - - - -	21710	20,821,605 – 20,821,673	-	5	68	95.88	-3.95	0.95	0.998430
15755	dm3.chrX	20,822,935 – 20,822,987	- - - - - - - -	21711	20,822,935 – 20,822,987	+	6	64	81.31	-1.91	0.75	0.914613
15755	dm3.chrX	20,822,935 – 20,822,987	- - - - - - - -	21712	20,822,935 – 20,822,987	-	6	64	81.31	-0.76	0.88	0.506106
15756	dm3.chrX	20,843,985 – 20,844,090	- - - - - - - -	21713	20,843,985 – 20,844,090	-	9	106	83.82	-0.88	0.83	0.531999
15757	dm3.chrX	20,846,632 – 20,846,734	- - - - - - - -	21714	20,846,632 – 20,846,734	+	6	102	79.87	-1.58	0.70	0.874818
15758	dm3.chrX	20,847,273 – 20,847,378	- - - - - - - -	21715	20,847,273 – 20,847,378	+	8	120	80.95	-2.21	0.76	0.984697
15758	dm3.chrX	20,847,273 – 20,847,378	- - - - - - - -	21716	20,847,273 – 20,847,378	-	8	120	80.95	-2.67	0.60	0.984055
15759	dm3.chrX	20,849,504 – 20,849,563	- - - - - - - -	21717	20,849,504 – 20,849,563	+	6	68	73.23	-1.61	0.75	0.977005
15759	dm3.chrX	20,849,504 – 20,849,563	- - - - - - - -	21718	20,849,504 – 20,849,563	-	6	68	73.23	-1.82	0.64	0.972287
15760	dm3.chrX	20,854,081 – 20,854,187	- - - - - - - -	21719	20,854,081 – 20,854,187	-	3	120	63.51	-1.15	0.55	0.700461
15761	dm3.chrX	20,856,067 – 20,856,160	- - - - - - - -	21720	20,856,067 – 20,856,160	-	3	93	85.35	-1.40	0.89	0.758410
15762	dm3.chrX	20,872,105 – 20,872,182	- - - - - - - -	21721	20,872,105 – 20,872,182	+	11	77	95.16	-1.36	0.93	0.697990
15763	dm3.chrX	20,874,899 – 20,875,016	- - - - - - - -	21722	20,874,899 – 20,874,989	+	12	106	74.84	-1.84	0.49	0.920067
				21723	20,874,899 – 20,874,989	-	12	106	74.84	-2.57	0.51	0.994748
				21724	20,874,914 – 20,875,016	-	12	120	78.24	-2.02	0.47	0.763520
15764	dm3.chrX	20,927,355 – 20,927,454	- - - intron="intron;ID=intron_FBgn0031150:2_FBgn0031150:3;Name=bves-in;Parent=FBtr0077247;parent_type=mRNA" - - - -	21725	20,927,355 – 20,927,454	-	7	113	66.20	-1.26	0.42	0.649282
15765	dm3.chrX	20,931,333 – 20,931,425	- - - intron="intron;ID=intron_FBgn0031150:2_FBgn0031150:3;Name=bves-in;Parent=FBtr0077247;parent_type=mRNA" - - - -	21726	20,931,333 – 20,931,425	-	4	92	84.26	-2.12	0.71	0.833487
15766	dm3.chrX	20,936,423 – 20,936,537	- - - intron="intron;ID=intron_FBgn0052512:3_FBgn0052512:2;Name=CG32512-in;Parent=FBtr0077262;parent_type=mRNA" - - - -	21727	20,936,423 – 20,936,537	+	5	114	94.82	-2.44	0.86	0.941552
15766	dm3.chrX	20,936,423 – 20,936,537		21728	20,936,423 – 20,936,537	-	5	114	94.82	-2.10	0.91	0.936911
15767	dm3.chrX	20,940,119 – 20,940,212	- - - - - - - -	21729	20,940,119 – 20,940,212	+	7	113	65.02	-1.06	0.46	0.559106
15768	dm3.chrX	20,943,142 – 20,943,251	- - - - - - - -	21730	20,943,142 – 20,943,251	+	5	117	89.52	-3.10	0.72	0.977372
15768	dm3.chrX	20,943,142 – 20,943,251	- - - - - - - -	21731	20,943,142 – 20,943,251	-	5	117	89.52	-2.02	0.72	0.544944
15769	dm3.chrX	20,943,573 – 20,943,785	- - - - - - - -	21732	20,943,573 – 20,943,682	+	4	111	72.67	-2.44	0.51	0.950332
15769	dm3.chrX	20,943,573 – 20,943,785	- - - - - - - -	21733	20,943,679 – 20,943,785	-	5	111	81.42	-1.70	0.66	0.652392
15770	dm3.chrX	20,958,120 – 20,958,180	- - - - - - - -	21734	20,958,120 – 20,958,180	-	4	60	52.51	-0.69	0.40	0.627822
15771	dm3.chrX	20,964,644 – 20,964,703	- - - - - - - -	21735	20,964,644 – 20,964,703	-	5	59	91.69	-1.02	0.97	0.728910
15772	dm3.chrX	20,965,298 – 20,965,404	- - CDS="CDS;ID=CDS_CG33670:1_936;Name=stg1-cds;Parent=FBtr0091649;parent_type=mRNA" - - - - -	21736	20,965,298 – 20,965,404	+	5	109	86.38	-2.81	0.67	0.962677
15772	dm3.chrX	20,965,298 – 20,965,404		21737	20,965,298 – 20,965,404	-	5	109	86.38	-2.35	0.82	0.971858
15773	dm3.chrX	20,966,740 – 20,966,896	- - - intron="intron;ID=intron_CG33670:1_CG33670:2;Name=stg1-in;Parent=FBtr0091649;parent_type=mRNA" - - - -	21738	20,966,740 – 20,966,896	-	6	162	63.08	-0.81	0.49	0.848152
15774	dm3.chrX	20,970,292 – 20,970,345	- - - intron="intron;ID=intron_CG33670:1_CG33670:2;Name=stg1-in;Parent=FBtr0091649;parent_type=mRNA" - - - -	21739	20,970,292 – 20,970,345	-	7	63	93.35	-1.91	0.84	0.786466
15775	dm3.chrX	20,970,552 – 20,970,672	- - CDS="CDS;ID=CDS_FBgn0031155:1_943;Name=CG15446-cds;Parent=FBtr0300353;parent_type=mRNA" intron="intron;ID=intron_CG33670:1_CG33670:2;Name=stg1-in;Parent=FBtr0091649;parent_type=mRNA" - - - -	21740	20,970,552 – 20,970,672	-	6	120	80.22	-2.00	0.68	0.947886
15776	dm3.chrX	20,987,902 – 20,987,995	- - - - - - - -	21741	20,987,902 – 20,987,995	-	5	94	69.37	-1.86	0.35	0.511306
15777	dm3.chrX	20,991,638 – 20,991,737	- - - - - - - -	21742	20,991,638 – 20,991,737	+	6	100	78.52	-1.68	0.75	0.956758
15777	dm3.chrX	20,991,638 – 20,991,737	- - - - - - - -	21743	20,991,638 – 20,991,737	-	6	100	78.52	-1.12	0.66	0.544111
15778	dm3.chrX	20,998,179 – 20,998,230	- - - intron="intron;ID=intron_FBgn0083956:1_FBgn0083956:3;Name=CG34120-in;Parent=FBtr0110827,FBtr0299591;parent_type=mRNA" - - - -	21744	20,998,179 – 20,998,230	+	5	55	96.20	1.09	2.55	0.871451
15779	dm3.chrX	20,999,408 – 20,999,550	- - - intron="intron;ID=intron_FBgn0083956:1_FBgn0083956:3;Name=CG34120-in;Parent=FBtr0110827,FBtr0299591;parent_type=mRNA" - - - -	21745	20,999,408 – 20,999,511	+	5	108	79.51	-1.78	0.69	0.857429
15779	dm3.chrX	20,999,408 – 20,999,550		21746	20,999,446 – 20,999,550	+	5	113	79.20	-1.96	0.79	0.964207
15780	dm3.chrX	21,004,521 – 21,004,643	- - CDS="CDS;ID=CDS_FBgn0083956:8_925;Name=CG34120-cds;Parent=FBtr0110826;parent_type=mRNA" - - - - -	21747	21,004,521 – 21,004,643	+	7	147	70.10	-2.20	0.52	0.989860
15780	dm3.chrX	21,004,521 – 21,004,643		21748	21,004,521 – 21,004,643	-	7	147	70.10	-2.17	0.44	0.960232
15781	dm3.chrX	21,014,542 – 21,014,608	- - - - - - - -	21749	21,014,542 – 21,014,608	+	5	67	67.32	-1.97	0.33	0.735770
15782	dm3.chrX	21,019,779 – 21,019,972	- - - - - - - -	21750	21,019,779 – 21,019,972	+	3	196	50.17	-1.08	0.36	0.500000
15783	dm3.chrX	21,034,559 – 21,034,610	- - - - - - - -	21751	21,034,559 – 21,034,610	+	3	51	93.46	-0.99	1.00	0.759918
15784	dm3.chrX	21,034,696 – 21,034,818	- - - - - - - -	21752	21,034,696 – 21,034,818	+	6	122	69.67	-1.58	0.45	0.863882
15785	dm3.chrX	21,042,159 – 21,042,259	- - - - - - - -	21753	21,042,159 – 21,042,255	+	5	96	76.25	-1.53	0.55	0.600712
15785	dm3.chrX	21,042,159 – 21,042,259	- - - - - - - -	21754	21,042,164 – 21,042,259	+	5	95	74.41	-1.59	0.55	0.780029
15786	dm3.chrX	21,050,727 – 21,050,893	- - - - - - - -	21755	21,050,727 – 21,050,831	-	6	120	82.07	-2.32	0.84	0.988004
15786	dm3.chrX	21,050,727 – 21,050,893	- - - - - - - -	21756	21,050,798 – 21,050,893	-	5	95	91.42	-1.73	0.89	0.845625
15787	dm3.chrX	21,054,952 – 21,055,064	- - - - - - - -	21757	21,054,952 – 21,055,064	-	6	120	56.22	-2.03	0.24	0.890681
15788	dm3.chrX	21,067,162 – 21,067,275	- - - - - - - -	21758	21,067,162 – 21,067,264	+	5	120	78.87	-1.32	0.72	0.613525
15788	dm3.chrX	21,067,162 – 21,067,275	- - - - - - - -	21759	21,067,163 – 21,067,275	+	5	120	82.52	-2.11	0.70	0.906439
15789	dm3.chrX	21,074,686 – 21,074,739	- - - - - - - -	21760	21,074,686 – 21,074,739	-	3	53	75.47	-2.10	0.63	0.886408
15790	dm3.chrX	21,079,043 – 21,079,139	- - - intron="intron;ID=intron_FBgn0052521:3_FBgn0052521:1;Name=CG32521-in;Parent=FBtr0077234,FBtr0077235;parent_type=mRNA" - - - -	21761	21,079,043 – 21,079,139	+	9	114	64.93	-2.24	0.24	0.732877
15791	dm3.chrX	21,081,328 – 21,081,423	- - - intron="intron;ID=intron_FBgn0052521:3_FBgn0052521:2;Name=CG32521-in;Parent=FBtr0077236;parent_type=mRNA" - - - -	21762	21,081,328 – 21,081,423	+	5	113	60.22	-1.41	0.41	0.934600
15792	dm3.chrX	21,081,836 – 21,081,958	- - - intron="intron;ID=intron_FBgn0052521:3_FBgn0052521:2;Name=CG32521-in;Parent=FBtr0077236;parent_type=mRNA" - - - -	21763	21,081,836 – 21,081,933	-	3	97	81.68	-1.26	0.94	0.862953
15792	dm3.chrX	21,081,836 – 21,081,958		21764	21,081,867 – 21,081,958	-	5	110	77.28	-1.31	0.70	0.668182
15793	dm3.chrX	21,085,816 – 21,085,886	- - - intron="intron;ID=intron_FBgn0052521:5_FBgn0052521:4;Name=CG32521-in;Parent=FBtr0077235;parent_type=mRNA" - - - -	21765	21,085,816 – 21,085,886	+	12	71	97.72	-1.04	0.96	0.507531
15794	dm3.chrX	21,099,831 – 21,099,956	- - - intron="intron;ID=intron_FBgn0052521:6_FBgn0052521:5;Name=CG32521-in;Parent=FBtr0077235;parent_type=mRNA" - - - -	21766	21,099,831 – 21,099,939	-	6	114	76.99	-1.53	0.67	0.882452
				21767	21,099,866 – 21,099,956	+	5	90	92.34	-1.86	0.84	0.747149
				21768	21,099,866 – 21,099,956	-	5	90	92.34	-4.56	0.91	0.999009
15795	dm3.chrX	21,108,802 – 21,108,951	- - - intron="intron;ID=intron_FBgn0052521:6_FBgn0052521:5;Name=CG32521-in;Parent=FBtr0077235;parent_type=mRNA" - - - -	21769	21,108,802 – 21,108,951	-	10	156	72.44	-1.82	0.47	0.956652
15796	dm3.chrX	21,112,616 – 21,112,669	- - - intron="intron;ID=intron_FBgn0052521:6_FBgn0052521:5;Name=CG32521-in;Parent=FBtr0077235;parent_type=mRNA" - - - -	21770	21,112,616 – 21,112,669	+	5	61	66.16	-0.94	0.54	0.713275
15797	dm3.chrX	21,117,255 – 21,117,358	- - - intron="intron;ID=intron_FBgn0052521:6_FBgn0052521:5;Name=CG32521-in;Parent=FBtr0077235;parent_type=mRNA" - - - -	21771	21,117,255 – 21,117,358	-	8	104	65.16	-0.95	0.51	0.964379
15798	dm3.chrX	21,127,494 – 21,127,575	- - - intron="intron;ID=intron_FBgn0052521:6_FBgn0052521:5;Name=CG32521-in;Parent=FBtr0077235;parent_type=mRNA" - - - -	21772	21,127,494 – 21,127,575	-	11	86	82.44	-2.56	0.53	0.956974
15799	dm3.chrX	21,133,875 – 21,133,967	- - - intron="intron;ID=intron_FBgn0052521:6_FBgn0052521:5;Name=CG32521-in;Parent=FBtr0077235;parent_type=mRNA" - - - -	21773	21,133,875 – 21,133,967	+	4	92	83.43	-1.78	0.80	0.856636
15800	dm3.chrX	21,137,603 – 21,137,696	- - - intron="intron;ID=intron_FBgn0052521:6_FBgn0052521:5;Name=CG32521-in;Parent=FBtr0077235;parent_type=mRNA" - - - -	21774	21,137,603 – 21,137,696	+	3	93	100.00	-1.13	1.00	0.722234
15800	dm3.chrX	21,137,603 – 21,137,696		21775	21,137,603 – 21,137,696	-	3	93	100.00	-1.41	1.00	0.857586
15801	dm3.chrX	21,150,767 – 21,150,860	- - - intron="intron;ID=intron_FBgn0052521:7_FBgn0052521:6;Name=CG32521-in;Parent=FBtr0077236,FBtr0077234,FBtr0077235;parent_type=mRNA" - - - -	21776	21,150,767 – 21,150,859	-	4	93	75.72	-3.06	0.42	0.967529
15801	dm3.chrX	21,150,767 – 21,150,860		21777	21,150,767 – 21,150,860	-	4	94	75.99	-3.11	0.42	0.970494
15802	dm3.chrX	21,153,086 – 21,153,185	- - - - - - - -	21778	21,153,086 – 21,153,185	+	3	103	88.03	-2.03	0.74	0.610248
15803	dm3.chrX	21,172,723 – 21,172,821	- - - - - - - -	21779	21,172,723 – 21,172,816	-	5	102	83.45	-1.87	0.86	0.947431
15803	dm3.chrX	21,172,723 – 21,172,821	- - - - - - - -	21780	21,172,723 – 21,172,821	-	5	102	83.75	-1.75	0.83	0.900659
15804	dm3.chrX	21,174,229 – 21,174,463	- - - - - - - -	21781	21,174,229 – 21,174,344	-	3	120	89.01	-1.70	0.80	0.511000
15804	dm3.chrX	21,174,229 – 21,174,463	- - - - - - - -	21782	21,174,344 – 21,174,463	-	3	120	79.23	-1.92	0.67	0.646639
15805	dm3.chrX	21,195,008 – 21,195,101	- - - - - - - -	21783	21,195,008 – 21,195,101	+	4	120	79.19	-1.51	0.75	0.671384
15806	dm3.chrX	21,210,730 – 21,210,821	- - - - - - - -	21784	21,210,730 – 21,210,821	+	6	107	75.76	-1.07	0.68	0.698254
15807	dm3.chrX	21,218,431 – 21,218,529	- - - intron="intron;ID=intron_FBgn0015527:3_FBgn0015527:2;Name=pen-in;Parent=FBtr0077223;parent_type=mRNA" - - - -	21785	21,218,431 – 21,218,529	+	4	98	73.58	-2.05	0.68	0.979004
15808	dm3.chrX	21,220,883 – 21,220,981	- - - - - - - -	21786	21,220,883 – 21,220,981	-	5	111	73.35	-2.30	0.55	0.973365
15809	dm3.chrX	21,225,592 – 21,225,712	- - CDS="CDS;ID=CDS_FBgn0003464:8_884;Name=sol-cds;Parent=FBtr0301583;parent_type=mRNA" - - - - -	21787	21,225,592 – 21,225,712	+	14	120	79.04	-1.14	0.62	0.754300
15810	dm3.chrX	21,238,664 – 21,238,754	- - - intron="intron;ID=intron_CG1414:2_CG1414:3;Name=bbx-in;Parent=FBtr0100598;parent_type=mRNA" - - - -	21788	21,238,664 – 21,238,754	+	6	100	81.36	-2.34	0.71	0.975271
15810	dm3.chrX	21,238,664 – 21,238,754		21789	21,238,664 – 21,238,754	-	6	100	81.36	-2.32	0.57	0.880083
15811	dm3.chrX	21,240,579 – 21,240,673	- - - intron="intron;ID=intron_CG1414:6_CG1414:3;Name=bbx-in;Parent=FBtr0100599;parent_type=mRNA" - - - -	21790	21,240,579 – 21,240,673	-	7	97	80.52	-2.25	0.64	0.946848
15812	dm3.chrX	21,243,214 – 21,243,264	- - CDS="CDS;ID=CDS_CG1414:5_890;Name=bbx-cds;Parent=FBtr0100598;parent_type=mRNA" - - - - -	21791	21,243,214 – 21,243,264	-	10	50	92.62	-0.85	0.95	0.527416
15813	dm3.chrX	21,264,157 – 21,264,248	- - - - - - - -	21792	21,264,157 – 21,264,248	-	3	91	81.03	-1.00	0.89	0.557829
15814	dm3.chrX	21,264,485 – 21,264,646	- - - - - - - -	21793	21,264,485 – 21,264,605	-	3	120	67.47	-1.52	0.59	0.660988
15814	dm3.chrX	21,264,485 – 21,264,646	- - - - - - - -	21794	21,264,527 – 21,264,646	+	3	120	66.87	-1.30	0.60	0.528729
15815	dm3.chrX	21,267,245 – 21,267,314	- - - - - - - -	21795	21,267,245 – 21,267,314	-	11	69	78.53	-2.02	0.37	0.500000
15816	dm3.chrX	21,277,330 – 21,277,444	- - - - - - - -	21796	21,277,330 – 21,277,444	-	3	114	64.69	-0.90	0.72	0.779675
15817	dm3.chrX	21,277,575 – 21,277,634	- - - - - - - -	21797	21,277,575 – 21,277,634	+	4	64	76.14	-1.46	0.77	0.894652
15818	dm3.chrX	21,278,103 – 21,278,209	- - - - - - - -	21798	21,278,103 – 21,278,209	+	4	120	66.28	-2.29	0.39	0.938594
15819	dm3.chrX	21,288,077 – 21,288,183	- - - - - - - -	21799	21,288,077 – 21,288,183	-	12	111	89.50	-2.79	0.69	0.963913
15820	dm3.chrX	21,310,808 – 21,310,955	- - - intron="intron;ID=intron_FBgn0259245:9_FBgn0259245:7;Name=CG42343-in;Parent=FBtr0299898,FBtr0299901;parent_type=mRNA" - - - -	21800	21,310,808 – 21,310,955	+	11	167	69.26	-1.29	0.43	0.786627
15821	dm3.chrX	21,313,286 – 21,313,389	- - - intron="intron;ID=intron_FBgn0259245:10_FBgn0259245:9;Name=CG42343-in;Parent=FBtr0299898,FBtr0299901;parent_type=mRNA" - - - -	21801	21,313,286 – 21,313,389	+	7	108	55.17	-2.50	0.14	0.911128
15821	dm3.chrX	21,313,286 – 21,313,389		21802	21,313,286 – 21,313,389	-	7	108	55.17	-2.58	0.08	0.757336
15822	dm3.chrX	21,315,596 – 21,315,686	- - - intron="intron;ID=intron_FBgn0259245:11_FBgn0259245:10;Name=CG42343-in;Parent=FBtr0299898,FBtr0299899;parent_type=mRNA" - - - -	21803	21,315,596 – 21,315,686	-	5	90	66.70	-2.93	0.48	0.999140
15823	dm3.chrX	21,315,921 – 21,316,011	- - - intron="intron;ID=intron_FBgn0259245:11_FBgn0259245:10;Name=CG42343-in;Parent=FBtr0299898,FBtr0299899;parent_type=mRNA" - - - -	21804	21,315,921 – 21,316,011	-	3	117	80.91	-2.02	0.71	0.816453
15824	dm3.chrX	21,318,061 – 21,318,168	- - - intron="intron;ID=intron_FBgn0259245:11_FBgn0259245:10;Name=CG42343-in;Parent=FBtr0299898,FBtr0299899;parent_type=mRNA" - - - -	21805	21,318,061 – 21,318,168	+	5	107	88.35	-1.91	0.75	0.661213
15824	dm3.chrX	21,318,061 – 21,318,168		21806	21,318,061 – 21,318,168	-	5	107	88.35	-2.68	0.76	0.966198
15825	dm3.chrX	21,326,818 – 21,326,872	- - - intron="intron;ID=intron_FBgn0259245:11_FBgn0259245:10;Name=CG42343-in;Parent=FBtr0299898,FBtr0299899;parent_type=mRNA" - - - -	21807	21,326,818 – 21,326,872	-	3	55	71.34	-0.60	0.86	0.549408
15826	dm3.chrX	21,332,080 – 21,332,132	- - - - - - - -	21808	21,332,080 – 21,332,132	+	4	54	50.94	-0.30	0.48	0.687045
15827	dm3.chrX	21,338,923 – 21,339,029	- - - - - - - -	21809	21,338,923 – 21,339,026	+	12	119	80.01	-1.64	0.59	0.707004
				21810	21,338,923 – 21,339,026	-	12	119	80.01	-1.76	0.51	0.526790
				21811	21,338,926 – 21,339,029	+	12	119	80.23	-1.53	0.57	0.500000
15828	dm3.chrX	21,346,278 – 21,346,370	- - - - - - - -	21812	21,346,278 – 21,346,370	+	6	102	68.80	-1.37	0.52	0.799577
15829	dm3.chrX	21,354,301 – 21,354,393	- - - - - - - -	21813	21,354,301 – 21,354,393	+	3	93	77.29	-1.85	0.68	0.788381
15830	dm3.chrX	21,354,643 – 21,354,706	- - - - - - - -	21814	21,354,643 – 21,354,706	-	4	63	60.32	-1.29	0.43	0.805122
15831	dm3.chrX	21,363,459 – 21,363,595	- - - - - - - -	21815	21,363,459 – 21,363,560	-	3	101	73.79	-2.24	0.62	0.923785
15831	dm3.chrX	21,363,459 – 21,363,595	- - - - - - - -	21816	21,363,498 – 21,363,595	-	3	102	50.85	-1.61	0.36	0.807803
15832	dm3.chrX	21,363,628 – 21,363,766	- - - - - - - -	21817	21,363,628 – 21,363,726	+	5	120	72.18	-1.47	0.58	0.836226
15832	dm3.chrX	21,363,628 – 21,363,766	- - - - - - - -	21818	21,363,649 – 21,363,766	+	5	120	91.27	-1.57	0.83	0.545613
15833	dm3.chrX	21,364,286 – 21,364,346	- - - - - - - -	21819	21,364,286 – 21,364,346	+	3	60	92.18	-1.52	0.93	0.808606
15834	dm3.chrX	21,365,949 – 21,366,039	- - - - - - - -	21820	21,365,949 – 21,366,039	+	8	100	67.83	-1.16	0.45	0.704546
15835	dm3.chrX	21,368,390 – 21,368,448	- - - - - - - -	21821	21,368,390 – 21,368,448	-	11	73	82.40	-1.37	0.78	0.750641
15836	dm3.chrX	21,374,121 – 21,374,234	- - - - - - - -	21822	21,374,121 – 21,374,234	+	10	114	84.11	-2.10	0.58	0.774633
15837	dm3.chrX	21,387,323 – 21,387,444	- - - - - - - -	21823	21,387,323 – 21,387,437	-	12	114	88.10	-1.15	0.85	0.609931
15837	dm3.chrX	21,387,323 – 21,387,444	- - - - - - - -	21824	21,387,330 – 21,387,444	-	12	114	87.10	-1.12	0.81	0.500000
15838	dm3.chrX	21,428,070 – 21,428,160	- - - - - - - -	21825	21,428,070 – 21,428,160	-	7	106	61.28	-0.79	0.49	0.887424
15839	dm3.chrX	21,433,513 – 21,433,607	- - - - - - - -	21826	21,433,513 – 21,433,607	+	5	109	80.62	-1.82	0.74	0.930453
15840	dm3.chrX	21,442,349 – 21,442,443	- - - - - - - -	21827	21,442,349 – 21,442,443	-	5	94	89.89	-1.83	0.78	0.664758
15841	dm3.chrX	21,443,122 – 21,443,215	- - - - - - - -	21828	21,443,122 – 21,443,215	-	5	93	75.22	-1.27	0.70	0.835618
15842	dm3.chrX	21,447,125 – 21,447,251	- - - - - - - -	21829	21,447,125 – 21,447,215	+	6	97	79.61	-2.03	0.62	0.872950
				21830	21,447,142 – 21,447,246	+	5	114	76.28	-2.14	0.51	0.815302
				21831	21,447,142 – 21,447,246	-	5	114	76.28	-2.87	0.59	0.993361
				21832	21,447,148 – 21,447,251	+	5	113	77.94	-1.92	0.53	0.581540
				21833	21,447,148 – 21,447,251	-	5	113	77.94	-2.25	0.65	0.958855
15843	dm3.chrX	21,452,451 – 21,452,571	- - - - - - - -	21834	21,452,451 – 21,452,571	-	4	121	59.37	-1.92	0.30	0.632315
15844	dm3.chrX	21,462,734 – 21,462,876	- - - - - - - -	21835	21,462,734 – 21,462,876	+	3	150	90.65	-2.56	0.71	0.794117
15845	dm3.chrX	21,478,628 – 21,478,727	- - CDS="CDS;ID=CDS_FBgn0040028:3_944;Name=CG17450-cds;Parent=FBtr0070057;parent_type=mRNA" - - - - -	21836	21,478,628 – 21,478,727	-	11	99	78.37	-1.82	0.44	0.671422
15846	dm3.chrX	21,484,720 – 21,484,834	- - CDS="CDS;ID=CDS_FBgn0052820:4_947;Name=CG32820-cds;Parent=FBtr0070053;parent_type=mRNA" - - - - -	21837	21,484,720 – 21,484,834	-	12	114	72.36	-1.99	0.34	0.899020
15847	dm3.chrX	21,487,802 – 21,487,923	- - - intron="intron;ID=intron_CG32857:2_CG32857:3;Name=CG32857-in;Parent=FBtr0070052;parent_type=mRNA" - - - -	21838	21,487,802 – 21,487,923	+	3	133	88.47	-1.47	0.84	0.513265
15847	dm3.chrX	21,487,802 – 21,487,923		21839	21,487,802 – 21,487,923	-	3	133	88.47	-2.57	0.63	0.647638
15848	dm3.chrX	21,490,812 – 21,490,926	- - CDS="CDS;ID=CDS_FBgn0052819:4_969;Name=CG32819-cds;Parent=FBtr0070050;parent_type=mRNA" - - - - -	21840	21,490,812 – 21,490,926	-	12	114	72.36	-1.99	0.34	0.899020
15849	dm3.chrX	21,507,944 – 21,508,048	- - - - - - - -	21841	21,507,944 – 21,508,048	-	3	104	79.17	-2.49	0.59	0.887733
15850	dm3.chrX	21,508,804 – 21,508,885	- - - - - - - -	21842	21,508,804 – 21,508,885	+	3	82	54.29	-2.47	0.59	0.999606
15850	dm3.chrX	21,508,804 – 21,508,885	- - - - - - - -	21843	21,508,804 – 21,508,885	-	3	82	54.29	-2.38	0.45	0.997571
15851	dm3.chrX	21,560,447 – 21,560,573	- - - - - - - -	21844	21,560,447 – 21,560,573	+	3	128	49.04	-1.38	0.40	0.874208
15852	dm3.chrX	21,572,357 – 21,572,530	- - - - - - - -	21845	21,572,357 – 21,572,530	-	3	175	55.45	-3.03	0.33	0.994723
15853	dm3.chrX	21,575,400 – 21,575,526	- - - - - - - -	21846	21,575,400 – 21,575,526	+	3	128	48.77	-1.57	0.40	0.940038
15854	dm3.chrX	21,624,699 – 21,624,751	- - - - - - - -	21847	21,624,699 – 21,624,751	-	13	52	58.60	-0.51	0.51	0.956435
15855	dm3.chrX	21,658,794 – 21,658,866	- - - - - - - -	21848	21,658,794 – 21,658,866	-	6	72	54.68	-2.12	0.30	0.991419
15856	dm3.chrX	21,664,635 – 21,664,827	- - - - - - - -	21849	21,664,635 – 21,664,749	+	3	119	56.09	-0.77	0.52	0.651493
				21850	21,664,635 – 21,664,749	-	3	119	56.09	-2.13	0.50	0.995007
				21851	21,664,671 – 21,664,787	-	3	119	62.25	-1.36	0.76	0.978824
				21852	21,664,710 – 21,664,827	-	3	119	60.85	-0.91	0.68	0.883391
15857	dm3.chrX	21,664,898 – 21,665,015	- - - - - - - -	21853	21,664,898 – 21,665,015	-	8	118	78.59	-0.96	0.64	0.507371
15858	dm3.chrX	21,667,045 – 21,667,192	- - - - - - - -	21854	21,667,045 – 21,667,192	-	4	152	76.87	-2.16	0.62	0.913727
15859	dm3.chrX	21,668,095 – 21,668,189	- - - - - - - -	21855	21,668,095 – 21,668,189	-	3	94	77.22	-2.20	0.58	0.784075
15860	dm3.chrX	21,774,085 – 21,774,189	- - - - - - - -	21856	21,774,085 – 21,774,189	-	4	110	62.73	-1.47	0.52	0.967276
15861	dm3.chrX	21,780,622 – 21,780,678	- - - - - - - -	21857	21,780,622 – 21,780,678	+	4	61	67.43	-0.48	0.73	0.553241
15862	dm3.chrX	21,792,524 – 21,792,624	- - - - - - - -	21858	21,792,524 – 21,792,624	+	5	101	63.42	-1.40	0.53	0.977186
15862	dm3.chrX	21,792,524 – 21,792,624	- - - - - - - -	21859	21,792,524 – 21,792,624	-	5	101	63.42	-1.35	0.39	0.723728
15863	dm3.chrX	21,792,983 – 21,793,109	- - - - - - - -	21860	21,792,983 – 21,793,109	+	3	126	63.76	-1.39	0.53	0.782493
15864	dm3.chrX	21,794,206 – 21,794,288	- - - - - - - -	21861	21,794,206 – 21,794,288	-	4	82	82.32	-1.81	0.75	0.841509
15865	dm3.chrX	21,799,876 – 21,800,005	- - - - - - - -	21862	21,799,876 – 21,800,005	+	4	131	61.58	-1.11	0.41	0.527610
15866	dm3.chrX	21,800,169 – 21,800,232	- - - - - - - -	21863	21,800,169 – 21,800,232	+	3	63	55.03	-1.41	0.37	0.689586
15866	dm3.chrX	21,800,169 – 21,800,232	- - - - - - - -	21864	21,800,169 – 21,800,232	-	3	63	55.03	-1.06	0.56	0.951540
15867	dm3.chrX	21,800,481 – 21,800,572	- - - - - - - -	21865	21,800,481 – 21,800,572	+	3	91	72.76	-1.25	0.71	0.644322
15868	dm3.chrX	21,816,715 – 21,816,769	- - - - - - - -	21866	21,816,715 – 21,816,769	-	3	55	71.34	-1.15	0.69	0.567147
15869	dm3.chrX	21,855,442 – 21,855,541	- - - - - - - -	21867	21,855,442 – 21,855,541	+	9	99	79.19	-1.12	0.76	0.660232
15870	dm3.chrX	21,859,884 – 21,859,982	- - CDS="CDS;ID=CDS_CG14619:3_911;Name=CG14619-cds;Parent=FBtr0077346,FBtr0077347,FBtr0077348;parent_type=mRNA" - - - - -	21868	21,859,884 – 21,859,982	+	7	102	74.59	-1.83	0.40	0.601078
15871	dm3.chrX	21,902,724 – 21,902,795	- - - intron="intron;ID=intron_FBgn0027279:11_FBgn0027279:12;Name=l(1)G0196-in;Parent=FBtr0299526;parent_type=mRNA" - - - -	21869	21,902,724 – 21,902,795	+	6	72	72.00	-1.50	0.61	0.966004
15871	dm3.chrX	21,902,724 – 21,902,795		21870	21,902,724 – 21,902,795	-	6	72	72.00	-1.36	0.53	0.857188
15872	dm3.chrX	21,929,861 – 21,929,955	- - - - - - - -	21871	21,929,861 – 21,929,955	-	7	94	78.65	-2.22	0.44	0.657908
15873	dm3.chrX	21,966,018 – 21,966,069	- - - - - - - -	21872	21,966,018 – 21,966,069	+	4	51	70.26	-2.05	0.46	0.896187
15874	dm3.chrX	21,981,171 – 21,981,273	- - - - - - - -	21873	21,981,171 – 21,981,273	+	4	102	79.74	-1.61	0.78	0.883581
15875	dm3.chrX	21,983,799 – 21,983,891	- - - - - - - -	21874	21,983,799 – 21,983,891	-	7	106	78.02	-1.84	0.67	0.921664
15876	dm3.chrX	22,009,621 – 22,009,751	- - - intron="intron;ID=intron_CG32499:4_CG32499:5;Name=Cda4-in;Parent=FBtr0077362;parent_type=mRNA" - - - -	21875	22,009,621 – 22,009,719	-	10	118	71.81	-1.27	0.53	0.856495
15876	dm3.chrX	22,009,621 – 22,009,751		21876	22,009,647 – 22,009,751	-	9	118	65.11	-0.98	0.48	0.895307
15877	dm3.chrX	22,045,013 – 22,045,120	- - - - - - - -	21877	22,045,013 – 22,045,120	+	3	110	59.94	-1.06	0.50	0.624847
15878	dm3.chrX	22,062,248 – 22,062,354	- - - - - - - -	21878	22,062,248 – 22,062,354	+	5	108	90.82	-2.27	0.81	0.906456
15879	dm3.chrX	22,063,219 – 22,063,344	- - - - - - - -	21879	22,063,219 – 22,063,344	+	12	137	86.21	-1.76	0.65	0.505948
15880	dm3.chrX	22,071,184 – 22,071,292	- - - - - - - -	21880	22,071,184 – 22,071,292	+	4	120	73.91	-1.79	0.55	0.739532
15881	dm3.chrX	22,074,805 – 22,074,915	- - - - - - - -	21881	22,074,805 – 22,074,915	-	5	110	84.18	-1.71	0.70	0.601791
15882	dm3.chrX	22,076,250 – 22,076,315	- - - - - - - -	21882	22,076,250 – 22,076,315	-	5	65	84.62	-2.10	0.73	0.905130
15883	dm3.chrX	22,076,425 – 22,076,538	- - - - - - - -	21883	22,076,425 – 22,076,535	+	5	120	77.46	-2.11	0.50	0.755282
15883	dm3.chrX	22,076,425 – 22,076,538	- - - - - - - -	21884	22,076,430 – 22,076,538	+	5	119	73.88	-2.19	0.45	0.850913
15884	dm3.chrX	22,079,156 – 22,079,255	- - - - - - - -	21885	22,079,156 – 22,079,255	+	3	99	88.93	-2.06	0.86	0.905948
15885	dm3.chrX	22,108,429 – 22,108,528	- - - - - - - -	21886	22,108,429 – 22,108,528	-	6	105	84.34	-2.09	0.61	0.732675
15886	dm3.chrX	22,115,750 – 22,115,852	- - - - - - - -	21887	22,115,750 – 22,115,852	-	5	106	81.56	-1.75	0.65	0.680988
15887	dm3.chrX	22,129,043 – 22,129,141	- - - - - - - -	21888	22,129,043 – 22,129,141	+	4	99	52.83	-1.85	0.32	0.945932
15887	dm3.chrX	22,129,043 – 22,129,141	- - - - - - - -	21889	22,129,043 – 22,129,141	-	4	99	52.83	-1.40	0.30	0.644750
15888	dm3.chrX	22,162,696 – 22,162,786	- - - - - - - -	21890	22,162,696 – 22,162,786	-	5	90	76.64	-2.32	0.54	0.933901
15889	dm3.chrX	22,163,889 – 22,163,988	- - - - - - - -	21891	22,163,889 – 22,163,988	-	6	122	67.23	-2.06	0.39	0.899136
15890	dm3.chrX	22,164,965 – 22,165,051	- - - - - - - -	21892	22,164,965 – 22,165,051	-	12	87	84.11	-1.43	0.73	0.681843
15891	dm3.chrX	22,218,639 – 22,218,721	- - - - - - - -	21893	22,218,639 – 22,218,721	+	5	87	73.80	-1.52	0.80	0.964033
15892	dm3.chrX	22,249,421 – 22,249,517	- - - intron="intron;ID=intron_CG9559:226653-225317_CG9559:216411-216269;Name=fog-in;Parent=FBtr0077342;parent_type=mRNA" - - - -	21894	22,249,421 – 22,249,517	-	5	97	81.44	-1.46	0.75	0.722272
15893	dm3.chrX	22,257,030 – 22,257,095	- - - - - - - -	21895	22,257,030 – 22,257,095	+	7	66	64.44	-0.69	0.44	0.597745
15894	dm3.chrX	22,260,552 – 22,260,645	- - - - - - - -	21896	22,260,552 – 22,260,645	+	4	98	68.44	-1.37	0.52	0.634984
15895	dm3.chrX	22,261,031 – 22,261,088	- - - - - - - -	21897	22,261,031 – 22,261,088	+	5	60	76.86	-2.31	0.78	0.992522
15895	dm3.chrX	22,261,031 – 22,261,088	- - - - - - - -	21898	22,261,031 – 22,261,088	-	5	60	76.86	-2.11	0.62	0.948550
15896	dm3.chrX	22,264,156 – 22,264,229	- - - - - - - -	21899	22,264,156 – 22,264,229	+	11	73	77.30	-1.62	0.48	0.638373
15896	dm3.chrX	22,264,156 – 22,264,229	- - - - - - - -	21900	22,264,156 – 22,264,229	-	11	73	77.30	-1.84	0.49	0.833503
15897	dm3.chrX	22,270,786 – 22,270,845	- - - intron="intron;ID=intron_FBgn0259677:2_FBgn0259677:3;Name=CG42346-in;Parent=FBtr0299928;parent_type=mRNA" - - - -	21901	22,270,786 – 22,270,845	-	4	68	80.26	-1.13	0.92	0.845430
15898	dm3.chrX	22,272,534 – 22,272,594	- - - intron="intron;ID=intron_FBgn0259677:2_FBgn0259677:3;Name=CG42346-in;Parent=FBtr0299928;parent_type=mRNA" - - - -	21902	22,272,534 – 22,272,594	+	3	60	97.78	-1.51	0.93	0.664689
15898	dm3.chrX	22,272,534 – 22,272,594		21903	22,272,534 – 22,272,594	-	3	60	97.78	-1.37	0.94	0.617002
15899	dm3.chrX	22,274,045 – 22,274,188	- - - intron="intron;ID=intron_FBgn0259677:2_FBgn0259677:3;Name=CG42346-in;Parent=FBtr0299928;parent_type=mRNA" - - - -	21904	22,274,045 – 22,274,188	+	5	154	62.65	-1.84	0.50	0.994367
15900	dm3.chrX	22,296,093 – 22,296,155	- - - - - - - -	21905	22,296,093 – 22,296,155	-	3	62	54.30	-0.15	0.90	0.857229
15901	dm3.chrX	22,302,147 – 22,302,227	- - - - - - - -	21906	22,302,147 – 22,302,227	+	6	82	60.71	-0.29	0.54	0.751098
15902	dm3.chrX	22,319,932 – 22,320,054	- - - - - - - -	21907	22,319,932 – 22,320,003	+	7	83	69.23	-1.00	0.53	0.670935
				21908	22,319,932 – 22,320,003	-	7	83	69.23	-0.56	0.60	0.515509
				21909	22,320,003 – 22,320,054	+	4	51	88.24	-1.59	0.80	0.530714
15903	dm3.chrX	22,338,909 – 22,339,022	- - - - - - - -	21910	22,338,909 – 22,339,022	-	12	120	79.83	-1.73	0.74	0.956313
15904	dm3.chrX	22,347,361 – 22,347,478	- - CDS="CDS;ID=CDS_CG41106:316831-317518_886;Name=CG41106-cds;Parent=FBtr0111194;parent_type=mRNA" - - - - -	21911	22,347,361 – 22,347,478	-	8	117	74.37	-1.45	0.48	0.664859
15905	dm3.chrX	22,381,649 – 22,381,723	- - - - - - - -	21912	22,381,649 – 22,381,723	-	4	97	48.30	-1.10	0.35	0.559666
15906	dm3.chrX	22,415,269 – 22,415,332	- - - - - - - -	21913	22,415,269 – 22,415,332	-	5	63	63.44	-1.69	0.40	0.891455
15907	dm3.chrYHet	24,321 – 24,439	- - - intron="intron;ID=intron_CG40444:16954-19761_CG40444:30303-30469;Name=kl-5-in;Parent=FBtr0113891;parent_type=mRNA" - - - -	21914	24,321 – 24,439	+	4	118	81.78	-2.05	0.68	0.854331
15908	dm3.chrYHet	52,634 – 52,728	- - CDS="CDS;ID=CDS_CG17629:52629-52993_1051;Name=kl-3-cds;Parent=FBtr0113756;parent_type=mRNA" - - - - -	21915	52,634 – 52,728	-	15	115	66.34	-1.06	0.41	0.537393
15909	dm3.chrYHet	79,970 – 80,055	- - - - - - - -	21916	79,970 – 80,055	+	5	98	52.31	-2.24	0.49	0.999549
15909	dm3.chrYHet	79,970 – 80,055	- - - - - - - -	21917	79,970 – 80,055	-	5	98	52.31	-3.45	0.68	0.999972
15910	dm3.chrYHet	152,971 – 153,092	- - - - - - - -	21918	152,971 – 153,066	+	4	111	70.29	-1.34	0.57	0.651832
				21919	152,971 – 153,066	-	4	111	70.29	-1.53	0.56	0.773565
				21920	152,996 – 153,092	+	4	114	59.14	-1.87	0.62	0.997018
				21921	152,996 – 153,092	-	4	114	59.14	-1.48	0.51	0.960036
15911	dm3.chrYHet	164,789 – 164,893	- - - intron="intron;ID=intron_CG40440:161863-162113_CG40440:191730-191814;Name=Ppr-Y-in;Parent=FBtr0113889;parent_type=mRNA" - - - -	21922	164,789 – 164,893	+	4	104	65.87	-1.71	0.40	0.746471
15911	dm3.chrYHet	164,789 – 164,893		21923	164,789 – 164,893	-	4	104	65.87	-2.49	0.51	0.996763
15912	dm3.chrYHet	308,010 – 308,079	- - - - - - - -	21924	308,010 – 308,079	+	3	70	65.66	-2.13	0.59	0.971092
15912	dm3.chrYHet	308,010 – 308,079	- - - - - - - -	21925	308,010 – 308,079	-	3	70	65.66	-1.55	0.57	0.761530

Generated by rnazIndex.pl (part of RNAz 1.0) on Wed Apr 20 11:05:43 2011