| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,396,523 – 10,396,631 |
| Length | 108 |
| Max. P | 0.500000 |
| Location | 10,396,523 – 10,396,631 |
|---|---|
| Length | 108 |
| Sequences | 13 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 72.83 |
| Shannon entropy | 0.57999 |
| G+C content | 0.61388 |
| Mean single sequence MFE | -42.76 |
| Consensus MFE | -16.57 |
| Energy contribution | -16.79 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 10396523 108 + 27905053 CUCGAAACUGCGAGUUUUCCGCUCCGAUUUA-CCAGCUGCCGCCGCU------UUAGCAGCCGCAUCCGCGGCGUCAGCUGCGGAAACGACCUCCGAGAUGGA--AAAGAAUCCGCU ((((......))))((((((((((.((....-.((((((.((((((.------...((....))....)))))).))))))((....))...)).))).))))--)))......... ( -42.00, z-score = -2.57, R) >droWil1.scaffold_181089 3251582 108 + 12369635 UUCAAAGCUUCGCGUCUUUCGCUCCGUUUUG-CCGGCAGCCGCUUCU------UUGGCUGCCGCAUCGGCUGUCUCGGCAGCGGAGACAACUUCGGAGAUGGA--GAAGAAACCAGA .......(((((((.....)))(((((((((-(.((((((((.....------.)))))))))).((.(((((....))))).))..........))))))))--))))........ ( -43.40, z-score = -1.42, R) >droSim1.chr3R 16448870 108 - 27517382 CUCGAAACUGCGAGUUUUCCGCUCCGAUUUA-CCAGCUGCCGCCGCU------UUAGCAGCCGCAUCCGCGGCGUCGGCUGCGGAAACGACCUCCGAGAUGGA--AAAGAAUCCGCC ((((......))))((((((((((.((....-.((((((.((((((.------...((....))....)))))).))))))((....))...)).))).))))--)))......... ( -41.30, z-score = -1.96, R) >droSec1.super_0 9480927 108 - 21120651 CUCGAAACUGCGAGUUUUCCGCUCCGAUUUA-CCAGCUGCCGCCGCU------UUAGCAGCCGCAUCCGCGGCGUCGGCUGCGGAAACGACCUCCGAGAUGGA--AAAGAAUCCGCC ((((......))))((((((((((.((....-.((((((.((((((.------...((....))....)))))).))))))((....))...)).))).))))--)))......... ( -41.30, z-score = -1.96, R) >droYak2.chr3R 12792836 108 - 28832112 CUCGAAACUGCGGGUUUUCCGCUCCGAUUUA-CCAGCUGCUGCCGCU------UUAGCAGCCGCAUCUGCGGCAUCGGCCGCCGAAACAACCUCCGAGAUGGA--AAAAAAUCCGCU .........(((((((((((((((.((....-...((.(((((....------...))))).)).((.(((((....))))).)).......)).))).))))--...)))))))). ( -40.60, z-score = -2.72, R) >droEre2.scaffold_4770 9929705 108 + 17746568 CUCGAAGCUGCGGGUUUUCCGCUCCGAUUUA-CCAGCUGCCGCCGCU------UUAGCAGCCGCAUCCGCGGCGUCGGCUGCAGAAACAACCUCCGAGAUGGA--AAAGAAUCCGCC .........(((((((((((((((.((....-....((((.(((((.------...)).(((((....)))))...))).))))........)).))).))))--...)))))))). ( -43.59, z-score = -2.32, R) >droAna3.scaffold_13340 542399 108 + 23697760 CUCGAAGAAGCGCGUCUUCCGCUCGGACUUC-CCGGCCGCCGCCGCC------UUGGCCGCAGCGUCUGCGGCAUCCGCGGCGGAGACCACUUCCGAAAUGGA--GAAGAAACCGCU ........((((..(((((((.(((((....-..((.(.(((((((.------...(((((((...)))))))....))))))).).))...)))))..))))--..)))...)))) ( -46.70, z-score = -1.01, R) >droVir3.scaffold_13047 11039630 108 + 19223366 CUCAAAGCAGCGCGUCCGACGCUCCGUUUUG-CUGGCCGCAGCUGCC------UUGGCCGCUGCGUCGGCGGCAUGUGCCGCGGAUACCACCUCGGAGAUGGA--AAAGAAACCGGA ..((((((.(.(((.....))).).))))))-((((..(((((.((.------...)).)))))(((.(((((....))))).))).(((.(.....).))).--.......)))). ( -42.90, z-score = 0.14, R) >droGri2.scaffold_14624 905481 114 + 4233967 CUCAAAGCAGCGCGUUCUUCGCUCCGUUUUG-CUAGCUGCUGCCGCCGCCGCCUUCGCAGCUGCAUCGGCUGCAUCCGCUGCCGAGACGACCUCGGAAAUGGA--AAAGAAACCGGA .....(((((((((.....)))...(.....-)..)))))).......(((..((((((((((...))))))).((((...(((((.....)))))...))))--...)))..))). ( -41.10, z-score = -0.34, R) >droMoj3.scaffold_6540 3425266 105 - 34148556 CUCGAAACAGCGGGUCCGGCGCUCCGUUUUG-CUCGCUGCUGCUGCC------UUGGCCGC---AUCCGCUGCGUGGGCAGCGGACACUACCUCGGAGAUGGA--GAAGAAGCCGGA ((((......))))((((((.((((((((((-(.....))(((.((.------...)).))---)((((((((....))))))))..........))))))))--).....)))))) ( -47.00, z-score = -0.92, R) >dp4.chr2 14200541 108 + 30794189 UUCGAAGCUGCGCUUCUUGCGGUCCGACUUG-CUGGCUGCGGCUGCC------UUGGCUGCAGCAUCGGCUGCGUCGGCGGCGGAAACCACCUCGGAAAUGGA--AAAGAAUGCAGA .......(((((.(((((((.(.(((((..(-((((((((((((...------..)))))))))..))))...)))))).))(....)..((........)).--.)))))))))). ( -45.90, z-score = -1.12, R) >droPer1.super_0 5580743 108 - 11822988 UUCGAAGCUGCGCUUCUUGCGGUCCGAUUUG-CUGGCUGCGGCUGCC------UUGGCUGCAGCAUCGGCUGCGUCGGCGGCGGAAACCACCUCGGAAAUGGA--AAAGAAAGCAGA .......((((..(((((....(((.((((.-((((((((((((...------..))))))))).((.(((((....))))).))........))))))))))--.))))).)))). ( -44.60, z-score = -0.63, R) >anoGam1.chr3L 32281304 107 + 41284009 CUCGCAACGCCACCAACUCACCUCCACCGAGGUCAGCUCCAGUAUCU------UUUGCAGCAGUAUCU----CGUCCGGCGAGUCCUGCGCGUAGUAAACGGGCUGAAGGUGCCCGU ...((.((((((...((((.((.....(((((((.(((.(((.....------.))).))).).))))----))...)).))))..)).)))).))..((((((.......)))))) ( -35.50, z-score = -1.58, R) >consensus CUCGAAGCUGCGCGUCUUCCGCUCCGAUUUG_CCAGCUGCCGCCGCU______UUGGCAGCCGCAUCCGCGGCGUCGGCUGCGGAAACCACCUCGGAGAUGGA__AAAGAAUCCGGA ......................((((...........(((.((.(((........))).)).)))((.(((((....))))).))..............)))).............. (-16.57 = -16.79 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:22 2011