| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,393,776 – 10,393,866 |
| Length | 90 |
| Max. P | 0.920093 |
| Location | 10,393,776 – 10,393,866 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 66.92 |
| Shannon entropy | 0.62137 |
| G+C content | 0.31852 |
| Mean single sequence MFE | -12.96 |
| Consensus MFE | -8.54 |
| Energy contribution | -9.07 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.74 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10393776 90 + 27905053 ----UAGUUGAGAGA-AAAGAUAAUACGAUUCACCUAUUGAGAUAUAUAUAU--UGAGAUAUAAACAAACUGGUUAUGCCAACAGAACUGGUUAACC ----.((((....((-(..(......)..)))...((((..((((....)))--)..))))......))))(((((.((((.......))))))))) ( -10.00, z-score = 0.02, R) >droEre2.scaffold_4770 9926799 79 + 17746568 ----UAGCAGAAAGACAAAGAUAAUACGAUUUACCUAUUGAGAUAUAUA--------------AACAAACUGGUUCUGCCAACAGAACUGGUUAACC ----......................((((......)))).........--------------....(((..((((((....))))))..))).... ( -13.80, z-score = -2.47, R) >droYak2.chr3R 12790046 79 - 28832112 ----UAGUUGAGUGAGCAAGAUAAUACGAUUUACCUAUUGAGAUAUAUA--------------AACAAACUGGUUCUGCCAAUAGAACUGGUUAACC ----..(((.....))).........((((......)))).........--------------....(((..((((((....))))))..))).... ( -11.80, z-score = -0.46, R) >droSec1.super_0 9478079 92 - 21120651 ----UAGUUGAGCUA-AAAUAUAAUACGAUUUACCUAUUGAGAUAUAUAUAUAUUGAGAUAUAAGCAAACUGGUUAUGCCAACAGAACUGGUUAACC ----.((((..(((.-..(((((...((((......))))...))))).(((((....)))))))).))))(((((.((((.......))))))))) ( -14.30, z-score = -1.04, R) >droSim1.chr3R 16446225 90 - 27517382 ----AAGUUGAGAUA-AAAGAUAAUUCGAUUUACCUAUUGAGAUAUAUAUAU--UGAGAUAUAAGCAAACUGGUUAUGCCAACAGAACUGGUUAACC ----..(((..((((-....(((.((((((......)))))).)))...)))--)..)))...........(((((.((((.......))))))))) ( -13.10, z-score = -0.89, R) >dp4.chr2 14197535 95 + 30794189 AAGUUGAGAGAAAAACAAUAAUAAUA-AAAAGAGCGAGAGAGGUCUGUCAUAAAAUACGAUACGACAAACUGGUUUU-CUAUUGAAACUGGUUACUC ..(((........)))..........-............((((((((((.........)))).))).(((..(((((-.....)))))..))).))) ( -14.70, z-score = -0.37, R) >droPer1.super_0 5577836 92 - 11822988 AAGUUGAGAGAAAAACAAUAAUAAUA-AAAAGAGCGAGAGAGGUCUGUCAUAAAAUACGAUACGACAAACUGGUUUU-CUAUUUGAACUGGUUA--- ..((((....................-...(((.(......).)))(((.........))).)))).(((..((((.-......))))..))).--- ( -13.00, z-score = -0.00, R) >consensus ____UAGUUGAGAGA_AAAGAUAAUACGAUUUACCUAUUGAGAUAUAUAUAU__UGAGAUAUAAACAAACUGGUUAUGCCAACAGAACUGGUUAACC ...................................................................(((..((((((....))))))..))).... ( -8.54 = -9.07 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:21 2011