| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,391,878 – 10,392,013 |
| Length | 135 |
| Max. P | 0.857262 |
| Location | 10,391,878 – 10,392,013 |
|---|---|
| Length | 135 |
| Sequences | 6 |
| Columns | 141 |
| Reading direction | reverse |
| Mean pairwise identity | 71.55 |
| Shannon entropy | 0.53996 |
| G+C content | 0.58965 |
| Mean single sequence MFE | -51.47 |
| Consensus MFE | -30.09 |
| Energy contribution | -30.63 |
| Covariance contribution | 0.54 |
| Combinations/Pair | 1.49 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857262 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 10391878 135 - 27905053 UAUCUGGCGAUCCUGUUGAAGGACUAGUGUUAUCGCCUGUUGAAGGAGAGGU------CGAUGGGGAGGUGCUUCCAUCAGUGGGCGUGGUGCUUCCAUCAGUGGGCGUGGUGCUUCCAUCAGUGGGCGUGGUGCUUCCAU ......(((..((..((((.(((..((..(((.((((..((((.(((.....------.(((((((......)))))))....(((.....)))))).))))..)))))))..))))).))))..)))))((.....)).. ( -48.20, z-score = -0.09, R) >droSim1.chr3R 16444264 135 + 27517382 UGUCUGGCGAUCCUGCUGAAGGACUAGUGUUAUCGCCUGUUGAAGGAGAGGU------CGAUGGAGAGGUGCUUCCAUCAGUGGGCGUGGUGCUUCCGUCAGUGGGCGUCGUGCUUCCAUCAGUGGGCGUGGUGCUUCCAU ......(((((((..((((.(((..((..(((.((((..((((.((((..((------(........)))..)))).))))..)))))))..))))).))))..)).)))))(((..(....)..)))((((.....)))) ( -51.40, z-score = -0.72, R) >droSec1.super_0 9476185 135 + 21120651 UGUCUGGCGAUCCUGCUGAAGGACUAGUGUUAUCGCCUGUUGAAGGAGAGGU------UGAUGGAGAGGUGCUUCCACCAGUGGGAGUGGUGCUUCCAUCAGUGGGCGUGGUGCUUCCAUCGGUGGGCGUGGUGCUCCCGU .((.(.(((..((..((((.(((..((..(((.((((..(............------((((((((.(.((((((((....)))))))).)..)))))))))..)))))))..))))).))))..))))).).))...... ( -51.20, z-score = -0.52, R) >droYak2.chr3R 12788020 123 + 28832112 UGUCGGGGGAUCCUGCUGAAGGACUCGUGCUAUCGCUCGCUGAAGGAGAGG------------------UGCUGCCGCCAGUGGGAGUGGUGCUUCCAUCGGUGGGCGUGGUGCUUCCAUCGGUGGGCGUGGUGCUUCCGU ...((((((.((((.....)))))))(..(((.((((((((((.(((..((------------------..((((((((.(((((((.....))))))).))).)))..))..))))).)))))))))))))..)..))). ( -61.50, z-score = -3.05, R) >droEre2.scaffold_4770 9924808 120 - 17746568 UGUUGGGGGAUCCUGCCGAAGGAC------UACCGCCUGUUGAAGGAGAGGU---------------GCUGCCGCCAGUCGAUGGAGAGGUGCUUCCAUCAGUGGGCGUGGUGCCUCCAUCAGUGGGCGUGGUGCUUCCAU ....((.((...)).))((((.((------(((.(((..((((..(.((((.---------------.(..(.(((.(..(((((((......)))))))..).))))..)..))))).))))..)))))))).))))... ( -56.30, z-score = -2.35, R) >anoGam1.chrX 14364900 132 - 22145176 ---------UUCCUCCUGCAGCAGUGGUACUACCUCCAGCAGCAGUUGUGCUUCCUCCUGCAGCAGUAGUACUUCCUCCAGCAGCAGUGGUACUACCUCCUGCAGCAGUGGUACUACCUCCAGCAGCUGUUGUACUUCCUC ---------.......(((((((((((((.((((......((((....))))..((.((((((..((((((((..((.(....).)).))))))))...)))))).)).)))).)))).......)))))))))....... ( -40.21, z-score = -0.46, R) >consensus UGUCUGGCGAUCCUGCUGAAGGACUAGUGUUAUCGCCUGUUGAAGGAGAGGU_______GAUGGAGAGGUGCUUCCACCAGUGGGAGUGGUGCUUCCAUCAGUGGGCGUGGUGCUUCCAUCAGUGGGCGUGGUGCUUCCAU ...........((((((((.(((..(((((((.((((((((((.(((....................((((((.((.......))...))))))))).)))))))))))))))))))).)))))))).((((.....)))) (-30.09 = -30.63 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:21 2011