| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,350,769 – 10,350,860 |
| Length | 91 |
| Max. P | 0.596517 |
| Location | 10,350,769 – 10,350,860 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 60.31 |
| Shannon entropy | 0.80359 |
| G+C content | 0.42875 |
| Mean single sequence MFE | -21.45 |
| Consensus MFE | -6.40 |
| Energy contribution | -7.62 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10350769 91 + 27905053 ---UUCAUUUUAGCCUCCUUCAGCCAUUGUGCAGAUGCAGUUCAUUUUUCUGCAUUGUUCACCUUAAUUAAAGCGGGAUUACCCGCC-ACAGAUA----------- ---.......................(((((..(((((((.........)))))))................(((((....))))))-))))...----------- ( -20.30, z-score = -2.18, R) >droSim1.chr3R 16411197 91 - 27517382 ---UUCAUUUUAGCCUUCUUCAGCCAUUGUGCAGAUGCAGUUCAUUUUUCUGCAUUGUUCAGCUUAAUUAAAGCGGGAUUACCCGCC-ACAAACA----------- ---.......................(((((..(((((((.........)))))))................(((((....))))))-))))...----------- ( -20.60, z-score = -1.95, R) >droSec1.super_0 9429335 91 - 21120651 ---UUCAUUUCAGCCUUCUUCAGCCAUUGUGCAGAUGCAGUUCAUUUUUCUGCAUUGUUCACCAUAAUUAAAGCGGGAUUACCCGCC-ACAAACA----------- ---.......................(((((..(((((((.........)))))))................(((((....))))))-))))...----------- ( -20.60, z-score = -2.53, R) >droYak2.chr3R 12745765 98 - 28832112 ---UUCAUUUUUGCUUUCCUCCGCCAUUGUGCAGUUGCAGUUCAUUUUCCUGCAUUGUUCACCUCAAUUAAGGCGGGAUUACCCGCUAACAAACAUAUACC----- ---......((((..............((.(((((.((((.........))))))))).))..........((((((....))))))..))))........----- ( -19.20, z-score = -1.46, R) >droEre2.scaffold_4770 9882607 96 + 17746568 ---UUCAUUUUUGCUUUCC--CGCCAUUGUGUAGAUGCAGUUCACUUUUCUGCAUUGUCCACCUUAAUUAAAGCGGGAUUACCCGCUCACAAACAUAUACC----- ---.........((.....--.))..(((((..(((((((.........)))))))...............((((((....))))))))))).........----- ( -21.80, z-score = -3.16, R) >droAna3.scaffold_13340 509821 79 + 23697760 -----UAUUUUUGUUUCCUGCAGCCAUUGU---GGUGCAGCUCGCUUUG-UGCAUUGUCCGGCUUAAUUAAAGGGGGAUUACCUGGCA------------------ -----............(((((.((.....---)))))))...(((..(-((.(((.(((............))).))))))..))).------------------ ( -18.40, z-score = 1.22, R) >droWil1.scaffold_181089 3200589 104 + 12369635 GCUUUCAUUUCGAUUUCAUUGUGCUGUUCUGUGGUCCUAGUUCACUUUG-UGCAUUGUUCAUCUUAAUUAAAGCUGAACACAGAGAGUAGAUAGAGAGAAGGAGA- .(((((...((..((((...((((......((((.......))))....-.))))((((((.(((.....))).))))))..))))...))..))))).......- ( -21.30, z-score = 1.04, R) >droMoj3.scaffold_6540 3345488 100 - 34148556 ---GUUGUGUUGGCCUAAUCAAACUGGUCUAUAGCCCUGGCCAGAGCUGUGGCCCAGUUUGC---AUUUGCAGUUUUCCUUUUAGCAUGCGCUUUGUCGUUGCUUG ---((..((..(((.....((((((((.(((((((.((....)).))))))).)))))))).---....((((((........))).))))))....))..))... ( -29.40, z-score = -0.94, R) >consensus ___UUCAUUUUAGCCUUCUUCAGCCAUUGUGCAGAUGCAGUUCAUUUUUCUGCAUUGUUCACCUUAAUUAAAGCGGGAUUACCCGCC_ACAAACA___________ ............................(((((((.............))))))).................(((((....))))).................... ( -6.40 = -7.62 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:19 2011