| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,326,390 – 10,326,489 |
| Length | 99 |
| Max. P | 0.800824 |
| Location | 10,326,390 – 10,326,489 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 79.04 |
| Shannon entropy | 0.42363 |
| G+C content | 0.48152 |
| Mean single sequence MFE | -27.69 |
| Consensus MFE | -18.40 |
| Energy contribution | -20.29 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800824 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10326390 99 + 27905053 ------AACGCUGUCUGCGAAAGUACUUAGCCUAGGUCUCGAGUGCGUCUACAUGACUCUCACUUUUCGAGCCAGAAAGGAGCACUUGGAAAAAAUCCAUCAACU ------...((((..(((....)))..)))).....((.((((((((((.....))).....((((((......)))))).)))))))))............... ( -29.30, z-score = -2.11, R) >droSim1.chr3R 16386742 99 - 27517382 ------AACGCUGUCUGCGAAAGUACUUAGCCUAGGUCUCGAGUGCGUCUACAUGACUCUCACUUUUCGAGCCAGAAAGGAGCACUUGGAAAAAAUCCUUCAACU ------...((((..(((....)))..)))).....((.((((((((((.....))).....((((((......)))))).)))))))))............... ( -29.30, z-score = -1.94, R) >droSec1.super_0 9405110 99 - 21120651 ------AACGCUGUCUGCGAAAGUACUUAGCCUAGGUCUCGAGUGCGUCUACAUGACUCUCACUUUUCGAGCCAGAAAGGAGCACUUGGAAAAAAUCCUUCAACU ------...((((..(((....)))..)))).....((.((((((((((.....))).....((((((......)))))).)))))))))............... ( -29.30, z-score = -1.94, R) >droYak2.chr3R 12720665 99 - 28832112 ------AACGCUGUCUGCGAAAGUACUUAGCCUAGGUCUCGAGUGCGUCUACAUGACUCUCACUUUUCGAGCCAGAAAGGAGCACUUGGAGAAAAUCUAACCACC ------...((((..(((....)))..)))).(((((((((((((((((.....))).....((((((......)))))).)))))).))))...))))...... ( -31.10, z-score = -2.19, R) >droEre2.scaffold_4770 9858196 98 + 17746568 ------AACGCUGUCUGCGAAAGUACUUAGCCUAGGUCUCGAGUGCGUCUACAUGACUCUCACUUUUCGAGCCAGAAGGGAGCACUUGGA-AAAAUCUAUUCACU ------...((((..(((....)))..)))).(((((.(((((((((((.....))).....((((((......)))))).)))))))).-...)))))...... ( -29.80, z-score = -1.77, R) >droAna3.scaffold_13340 489922 92 + 23697760 ------------GUCUGCGAAAGUACUUGGCCCAGGUCUCGAGUGCGUCUACAUGACUCUCACUUUUAGAGCCGCCCUGCACCGCC-AGAAAAAGUUAGUCAAUU ------------...(((....))).(((((...((.((((((((.(((.....)))...)))))...)))))((...))...)))-))................ ( -20.80, z-score = 0.07, R) >droVir3.scaffold_13047 4632968 86 - 19223366 CGUACUGUGUGUGUUUGCGAAAGUGCUUUGGCCGGAUCUCAAGUGUGUCUACAUGACUCUCACUUUUAG-GCCACA--GGACUGCGUGG---------------- ..............(..((..(((.((.(((((.......(((((.(((.....)))...)))))...)-)))).)--).))).))..)---------------- ( -24.20, z-score = -0.03, R) >consensus ______AACGCUGUCUGCGAAAGUACUUAGCCUAGGUCUCGAGUGCGUCUACAUGACUCUCACUUUUCGAGCCAGAAAGGAGCACUUGGAAAAAAUCCAUCAACU .........((((..(((....)))..)))).......(((((((((((.....))).....((((((......)))))).))))))))................ (-18.40 = -20.29 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:15 2011