| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,325,095 – 10,325,221 |
| Length | 126 |
| Max. P | 0.700699 |
| Location | 10,325,095 – 10,325,221 |
|---|---|
| Length | 126 |
| Sequences | 7 |
| Columns | 130 |
| Reading direction | forward |
| Mean pairwise identity | 73.39 |
| Shannon entropy | 0.48691 |
| G+C content | 0.50605 |
| Mean single sequence MFE | -39.74 |
| Consensus MFE | -24.69 |
| Energy contribution | -26.13 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10325095 126 + 27905053 UCGGUGACCUGGUCAGAAAUCCCUGGGA----UUCGAUCGAUGCGAUUCGAUUGUCAUCGCCGCGGAGAUGCCCGUUUGCGCAUUUCAUCAGCAACGUUUGCUGACUAAUUCUCAAGGCAAUAGACAUUC ..(((((((..(..(....)..)..)).----..(((((((......))))))))))))(((...(((((((........))))))).((((((.....))))))...........)))........... ( -39.10, z-score = -0.75, R) >droSim1.chr3R 16385396 126 - 27517382 CCGGCGACCUGGUCAGAAAUCCCUGGGA----UUCGAUCGAUGCGAUUCGAUUGUCAUCGCCGCGGAGAUGCCCGUUUGCGCAUUUCAUCAGCAGCGUUUGCUGACUAAUUCUCAAGGCAAUAGACAUUC ..(((((((..(..(....)..)..)).----..(((((((......)))))))...)))))((.(((((((........))))))).(((((((...)))))))............))........... ( -39.50, z-score = -0.37, R) >droSec1.super_0 9403807 126 - 21120651 CCGGCGACCUGGUCAGAAAUCCCUGGGA----UUCGAUCGAUGCGAUUCGAUUGUCAUCGCCGCGGAGAUGCCCGUUUGCGCAUUUCAUCAGCAGCGUUUGCUGACUAAUUCUCAAGGUAAUAGACAUUC (((((((((..(..(....)..)..)).----..(((((((......)))))))...)))))).)(((((((........))))))).(((((((...)))))))......................... ( -38.20, z-score = -0.22, R) >droYak2.chr3R 12719278 130 - 28832112 CCGGCGACCCGGUCCGAAAUUGCUGGGAUUCAUUCGAUCGAUGCGAUUCGAUUGUCAUCGCCGUGGAGAUGCCCGCUUGCGCAUUUCAUCAGCAGUGUUUGCUGACUAAUUCCCAAGGCAAUAGACAUUC .((((((((((((........)))))).......(((((((......)))))))...))))))..(((((((........))))))).(((((((...)))))))......................... ( -41.20, z-score = -0.54, R) >droEre2.scaffold_4770 9856912 126 + 17746568 CCGGCGACCCGGUCCGAAAUCGCUGGGA----UUCGAUCGACGCUAUUCGAUUGUCAUCGCCGUGGAGAUGCCCGCUUGUGCAUUUCAUCAGCAGCGUUUGCUGACUAAUUCUCAAGGCAAUAGACAUUC .((((((((((((........)))))).----..(((((((......)))))))...))))))..(((((((........))))))).(((((((...)))))))......................... ( -40.30, z-score = -0.63, R) >dp4.chr2 16384640 115 + 30794189 -------CCAUCUCUGGAUGGAUUGGGAU-CAACUGAUGAGCAGUAGUC-AUUGCCACUGCUGCUGGAUUGUC--GUCGGUUAUUUCAUCAGCAGC-UCUGCUGACUCAU---CUAUGCCUUUCCCAUUU -------(((((....)))))..(((((.-.....((((((((((((..-.........((((((((((....--)))((.....))..)))))))-.)))))).)))))---)........)))))... ( -40.64, z-score = -2.59, R) >droPer1.super_0 7809511 115 - 11822988 -------CCAUCUCUGGAUGGAUUGGGAU-CAACUGAUGAGCAGUAGUC-AUUGCCACUGCUGCUGGAUUGUC--GUCGGUUAUUUCAUCAGUAGC-UCUGCUGACUCAU---CUAUGCCUUUCCCAUUU -------(((((....)))))..(((((.-.....((((((((((((..-...((.((((.((...(((((..--..)))))....)).)))).))-.)))))).)))))---)........)))))... ( -39.24, z-score = -2.45, R) >consensus CCGGCGACCUGGUCAGAAAUCCCUGGGA____UUCGAUCGAUGCGAUUCGAUUGUCAUCGCCGCGGAGAUGCCCGUUUGCGCAUUUCAUCAGCAGCGUUUGCUGACUAAUUCUCAAGGCAAUAGACAUUC ..((((((((((..........))))).......(((((((......)))))))...)))))((.(((((((........))))))).(((((((...)))))))............))........... (-24.69 = -26.13 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:14 2011