Locus 9985

Sequence ID dm3.chr3R
Location 10,321,748 – 10,321,850
Length 102
Max. P 0.974339
window13724

overview

Window 4

Location 10,321,748 – 10,321,850
Length 102
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 89.83
Shannon entropy 0.15742
G+C content 0.35968
Mean single sequence MFE -27.00
Consensus MFE -17.79
Energy contribution -18.10
Covariance contribution 0.31
Combinations/Pair 1.07
Mean z-score -3.36
Structure conservation index 0.66
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.91
SVM RNA-class probability 0.974339
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 10321748 102 - 27905053
GCAGAAGAAAUACACUCGAACGUAUUUCUUUUGGCUGUUUUUGUAUUUUGUUUUGCAUUUUGCAUAGCGGCAUGAAUAAAUCUUCAAAUGAGCAAUCACUCA
.((((((((((((........))))))))))))((((((..((((...((.....))...)))).)))))).((((......))))..((((......)))) ( -27.50, z-score =  -2.85, R)
>droSec1.super_0 9400513 101 + 21120651
GCAGAAGAAAUACACUCGAACGUAUUUCUUUUGGGC-UUUUUGUUUUUCAUUUUGCAUUUUGCAUAGCGGCAUGAAUAAAUCUUCAAACGAGCAAUCACUCA
.((((((((((((........)))))))))))).((-((((((...(((((.((((..........)))).)))))........)))).))))......... ( -23.10, z-score =  -2.29, R)
>droYak2.chr3R 12715866 92 + 28832112
GCAGAAGAAAUACACUCGAACGUAUUUC----------UUUUGCUUUUUGUUGUGCAUUUUGCAUAGCGGCAUGAAUAAAUCUUCAAACGAGCAAUCACUCA
(((((((((((((........)))))))----------))))))...(((((((((.....)))))))))..((((......))))...(((......))). ( -28.70, z-score =  -4.16, R)
>droEre2.scaffold_4770 9853452 92 - 17746568
GCAGAAGAAAUACACUCGAACGUAUUUC----------UUUUGCUUUUUGUUGUGCAUUUUGCAUAGCGGCAUGAAUAAAUCUUCAAACGAGCAAUCACUCA
(((((((((((((........)))))))----------))))))...(((((((((.....)))))))))..((((......))))...(((......))). ( -28.70, z-score =  -4.16, R)
>consensus
GCAGAAGAAAUACACUCGAACGUAUUUC__________UUUUGCUUUUUGUUGUGCAUUUUGCAUAGCGGCAUGAAUAAAUCUUCAAACGAGCAAUCACUCA
(((((((((((((........)))))))..........))))))...(((((((((.....)))))))))..((((......))))...(((......))). (-17.79 = -18.10 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:12 2011