| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,310,447 – 10,310,537 |
| Length | 90 |
| Max. P | 0.570995 |
| Location | 10,310,447 – 10,310,537 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 63.66 |
| Shannon entropy | 0.63490 |
| G+C content | 0.46509 |
| Mean single sequence MFE | -18.07 |
| Consensus MFE | -7.57 |
| Energy contribution | -8.51 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570995 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10310447 90 - 27905053 ------------AUGACUUAUCUCA-GACACCCGGCUCUG-GGGUCCCCGCUUCCCGGUCAAAACAAACAGCACUUAAAAUGUGUUUUCUUGUUUGCCCGCCAU------------- ------------.............-.......(((...(-(((........))))((...((((((..(((((.......)))))...))))))..)))))..------------- ( -21.10, z-score = -0.86, R) >droSim1.chr3R 16371194 91 + 27517382 ------------AUGACUUAUCUGGUCGGACUCGGCUCUG-GUCUCCCCGCUUCCCGGUCAAAACAAACAGCACUUAAAAUGUGUUUUCUUGUUUGCCCGCCAU------------- ------------.(((((.....))))).....(((...(-(.....)).......((...((((((..(((((.......)))))...))))))..)))))..------------- ( -20.10, z-score = -0.60, R) >droSec1.super_0 9389348 91 + 21120651 ------------AUGACUUAUCUGGUCGGACUCGGCUCUG-GUCUCUCCGCUACCCGGUCAAAACAAACAGCACUUAAAAUGUGUUUUCUUGUUUGCCCGCCAU------------- ------------.(((((....(((.((((...(((....-)))..)))))))...)))))((((((..(((((.......)))))...)))))).........------------- ( -20.60, z-score = -0.96, R) >droYak2.chr3R 12704370 90 + 28832112 ------------AAGACUUAUAUCA-GACCCUCGACGCUG-GUCUCCCCGCUCCGCGGUCAAAACAAACAGCACUUAAAAUGUGUUUUCUUGUUUGCCCGCCAU------------- ------------............(-((((.........)-)))).........((((...((((((..(((((.......)))))...))))))..))))...------------- ( -19.40, z-score = -1.62, R) >droEre2.scaffold_4770 9841702 90 - 17746568 ------------AAGACUUAUCUCA-UGCCCUAGACCCCG-CUCUCCCCGCUUCCCGGUCAAAACAAACAGCACUUAAAAUGUGUUUUCUUGUUUGCCCGCCAU------------- ------------.............-.((....((((..(-(.......)).....)))).((((((..(((((.......)))))...))))))....))...------------- ( -13.00, z-score = -1.11, R) >droAna3.scaffold_13340 476876 103 - 23697760 GUCACUUAUCUUUCUACCUUUCCCAAGAUGCCUUUUAGAGUGUUUUCUGACUUCCCGGUCAAAACAAACAGCACUU-AAAUGAGUUUUCUUGUUUGCCCGCCAU------------- .......................(((((...(((...(((((((((.(((((....))))).)).....)))))))-....)))...)))))............------------- ( -14.70, z-score = -0.27, R) >dp4.chr2 16369274 91 - 30794189 --------------------------AUGGCUUAUCUUCCUCUCUCCCUCUCUUUGGGCCAAAACAAACAGCACUUAAAAUGUGUAUUCGUGUGUGUGUUUCUUGUUUGCCUGCAAA --------------------------..(((..............(((.......)))...((((((..(((((.....(((......)))....)))))..)))))))))...... ( -17.10, z-score = -1.64, R) >droPer1.super_0 7793830 91 + 11822988 --------------------------AUGGCUUAUCUCCCUCUCUCCCUCUCUUUGGGCCAAAACAAACAGCACUUAAAAUGUGUAUGCGUGUGUGUGUUUCUUGUUUGCCUGCAAA --------------------------..(((..............(((.......)))...((((((..(((((.....((((....))))....)))))..)))))))))...... ( -18.60, z-score = -1.64, R) >consensus ____________AUGACUUAUCUCA_GAGACUCGGCUCUG_GUCUCCCCGCUUCCCGGUCAAAACAAACAGCACUUAAAAUGUGUUUUCUUGUUUGCCCGCCAU_____________ ........................................................(((..((((((..(((((.......)))))...))))))....)))............... ( -7.57 = -8.51 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:09 2011