| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,298,465 – 10,298,562 |
| Length | 97 |
| Max. P | 0.831393 |
| Location | 10,298,465 – 10,298,562 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.85 |
| Shannon entropy | 0.39136 |
| G+C content | 0.34821 |
| Mean single sequence MFE | -19.03 |
| Consensus MFE | -12.96 |
| Energy contribution | -14.00 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.831393 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10298465 97 + 27905053 UUGUUUGCGUUGCCGUGUUUAU-UUAUUUAUUUGUAUUUGCUUA-UCAGCGGCACGGCGGCCUCUCUAAUUAAUUUU----UUCUUCUCUAAAAAUCGAAUAU------- .((((((.(((((((((((...-.(((......)))...(((..-..))))))))))))))...........(((((----(........)))))))))))).------- ( -19.30, z-score = -1.87, R) >droSim1.chr3R 16359283 97 - 27517382 UUGUUUGCGUUGCCGUGUUUAU-UUAUUUAUUUGUAUUUGCUUA-UCAGCGGCACGGCGGCGUCUCUAAUUAAUUUU----UUCUUCUCUGAAAAUCGAAAAU------- ......(((((((((((((...-.(((......)))...(((..-..))))))))))))))))............((----(((......)))))........------- ( -22.90, z-score = -2.41, R) >droSec1.super_0 9377524 97 - 21120651 UUGUUUGCGUUGCCGUGUUUAU-UUAUUUAUUUGUAUUUGCUUA-UCAGCGGCACGGCGGCGUCUCUAAUUAAUUUU----UUCUUCUCUGAAAAUCGAAAAU------- ......(((((((((((((...-.(((......)))...(((..-..))))))))))))))))............((----(((......)))))........------- ( -22.90, z-score = -2.41, R) >droEre2.scaffold_4770 9830109 100 + 17746568 UUGUUUGCGUUGCUGUGUUUAU-UUAU----UUGUAUUUGCUUA-UCAGCGGCACGGCGGCGUCUCUAAUUAAUUUU----UUCUUCUCCGAAAAUCGAAAUUCGAAAAU ......((((((((((((((((-....----..)))...(((..-..))))))))))))))))............((----(((......)))))(((.....))).... ( -22.00, z-score = -1.38, R) >droWil1.scaffold_181089 2378284 103 - 12369635 --UUCUUCGUUGUUGUUUAUAUACUAUACAUAUUUGUUUAUUUGCUUAUCAGCUCGUCGGCGUCUCUAAUUAAUUUUGGUGUUUUUUUUCCUUCCCCACUAACCC----- --.....(((((..(((.(((..(...(((....)))......)..))).)))....))))).............((((((...............))))))...----- ( -8.06, z-score = 0.26, R) >consensus UUGUUUGCGUUGCCGUGUUUAU_UUAUUUAUUUGUAUUUGCUUA_UCAGCGGCACGGCGGCGUCUCUAAUUAAUUUU____UUCUUCUCUGAAAAUCGAAAAU_______ ......((((((((((((......(((......)))..((((.....))))))))))))))))............................................... (-12.96 = -14.00 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:09 2011