| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,297,929 – 10,298,042 |
| Length | 113 |
| Max. P | 0.979033 |
| Location | 10,297,929 – 10,298,023 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 61.70 |
| Shannon entropy | 0.70735 |
| G+C content | 0.36191 |
| Mean single sequence MFE | -18.87 |
| Consensus MFE | -5.45 |
| Energy contribution | -5.27 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.64 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.880921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10297929 94 + 27905053 -------------AUCUACAUAUAUCUGCCGCUAAUUUUUGUCUUU-------CCUGUCCUAUAGACGGAAUUAUAAAUCUCU-CGUGGCGUCAACAAAAAUGAAAGAAAAACAU -------------...........((((((((.....(((((..((-------((.(((.....)))))))..))))).....-.))))).(((.......))).)))....... ( -17.60, z-score = -2.47, R) >droEre2.scaffold_4770 9829624 93 + 17746568 -------------AUCUACAUAUAUCUGCCGCUAAUUUUUGUCUUU-------CCUGUCCUGUAGACGGAAUUAUAAAUCUCU-UGCGGCGUCAACGAAAAAGAAAGAAAA-CAU -------------..............(((((.....(((((..((-------((.(((.....)))))))..))))).....-.))))).....................-... ( -19.80, z-score = -2.33, R) >droYak2.chr3R 12691511 94 - 28832112 -------------AUCUACAUAUAUCUGCCGCUAAUUUUUGUCUUU-------CCUGUCCUAUAGACGGAAUUAUAAAUCUCU-CGUGGCGUCGACGAAAAAGAAAGAAAAACAU -------------..............(((((.....(((((..((-------((.(((.....)))))))..))))).....-.)))))......................... ( -17.20, z-score = -1.20, R) >droSec1.super_0 9377007 100 - 21120651 -------AUCUACAUAUAUGUAUAUAUGCCGCUAAUUUUUGUCUUU-------CCCGUCCUAUAGACGGAAUUAUAAAUCUCU-CGUGGCGUCAACGAAAAUGAAAGAAAAACAU -------.(((.(((.(.(((....(((((((.....(((((..((-------((.(((.....)))))))..))))).....-.)))))))..))).).)))..)))....... ( -19.20, z-score = -1.86, R) >droSim1.chr3R 16358754 104 - 27517382 ---AUCUACACACAUAUAUGUAUAUAUGCCGCUAAUUUUUGUCUUU-------CCCGUCCUAUAGACGGAAUUAUAAAUCUCU-CGUGGCGUCAACGAAAAUGAAAGAAAAACAU ---.........(((.(.(((....(((((((.....(((((..((-------((.(((.....)))))))..))))).....-.)))))))..))).).)))............ ( -18.90, z-score = -1.60, R) >dp4.chr2 16352567 88 + 30794189 --------------GCCUUCUAUUUCUGCCACUAAUUAUUGUAUUUGUUGCUGCUCGUGUUCUAUGCUCAAUUAUAAAUCUCUUCGUGGCGGGGACUCGGCA------------- --------------(((.....(..(((((((......(((((.(((..((.((....)).....)).))).)))))........)))))))..)...))).------------- ( -22.04, z-score = -2.84, R) >droPer1.super_0 7776876 88 - 11822988 --------------GCCUUCUAUUUCUGCCACUAAUUAUUGUAUUUGUUGCUGCUCGUGUUCUAUGCUGAAUUAUAAAUCUCUUCGUGGCGGGGACUCGGCA------------- --------------(((.....(..(((((((........(((.....))).......((((......)))).............)))))))..)...))).------------- ( -20.60, z-score = -1.85, R) >droWil1.scaffold_181089 2377453 108 - 12369635 UUCCACAUAUGACAAAAGCGUAAAACUAUUUAUAACUAUAUUAUUG-------UCCAUAGAAAUGAUCGCAUUCCAAAUUAUGUCAUUUCAUGGAACAAAAGUAACUAAAACAAG .......((((.(....)))))................((((.(((-------(((((.((((((...((((........)))))))))))))).)))).))))........... ( -15.60, z-score = -1.94, R) >consensus _____________AUCUACAUAUAUCUGCCGCUAAUUUUUGUCUUU_______CCCGUCCUAUAGACGGAAUUAUAAAUCUCU_CGUGGCGUCAACGAAAAAGAAAGAAAAACAU ..........................((((((........................(((.....))).((........)).....))))))........................ ( -5.45 = -5.27 + -0.17)
| Location | 10,297,936 – 10,298,042 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 76.42 |
| Shannon entropy | 0.44588 |
| G+C content | 0.36090 |
| Mean single sequence MFE | -23.15 |
| Consensus MFE | -12.15 |
| Energy contribution | -14.40 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.979033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10297936 106 + 27905053 -----UAUAUCUGCCGCUAAUUUUUGUCUUUCCUGUCCUAUAGACGGAAUUAUAAAUC-UCUCGUGGCGUCAACAAAAAUGAAAGAAAAACAUCUACUAAUUCGCUGGCAAA -----......((((((.(((((((((..((((.(((.....)))))))..)))))((-(.((((.............)))).)))............)))).)).)))).. ( -19.72, z-score = -1.90, R) >droEre2.scaffold_4770 9829631 105 + 17746568 -----UAUAUCUGCCGCUAAUUUUUGUCUUUCCUGUCCUGUAGACGGAAUUAUAAAUC-UCUUGCGGCGUCAACGAAAAAGAAAGAAAA-CAUCUACUGAUUCGCUGGCAAC -----.......(((((.....(((((..((((.(((.....)))))))..)))))..-....)))))((((.((((..((..(((...-..))).))..)))).))))... ( -28.90, z-score = -3.73, R) >droYak2.chr3R 12691518 106 - 28832112 -----UAUAUCUGCCGCUAAUUUUUGUCUUUCCUGUCCUAUAGACGGAAUUAUAAAUC-UCUCGUGGCGUCGACGAAAAAGAAAGAAAAACAUCUACUAAUUCGCUGGCAAA -----.......(((((.....(((((..((((.(((.....)))))))..)))))..-....)))))((((.((((..((..(((......))).))..)))).))))... ( -24.70, z-score = -2.61, R) >droSec1.super_0 9377017 109 - 21120651 --AUGUAUAUAUGCCGCUAAUUUUUGUCUUUCCCGUCCUAUAGACGGAAUUAUAAAUC-UCUCGUGGCGUCAACGAAAAUGAAAGAAAAACAUCCACUAAUUCGCUGGCAAA --.........((((((.((((..((......(((((.....))))).........((-(.((((..((....))...)))).)))........))..)))).)).)))).. ( -23.60, z-score = -2.13, R) >droSim1.chr3R 16358768 109 - 27517382 --AUGUAUAUAUGCCGCUAAUUUUUGUCUUUCCCGUCCUAUAGACGGAAUUAUAAAUC-UCUCGUGGCGUCAACGAAAAUGAAAGAAAAACAUCCACUAAUUCGCUGGCAAA --.........((((((.((((..((......(((((.....))))).........((-(.((((..((....))...)))).)))........))..)))).)).)))).. ( -23.60, z-score = -2.13, R) >droWil1.scaffold_181089 2377468 101 - 12369635 AAGCGUAAAACUAUUUAUAACUAUAUUAUUGUCCAUAGAAAUGAUCGCAUUCCAAAUUAUGUCAUUUCAUGGAACAAAAGUAACUAAAACAAGCUGGUAAU----------- .((((((((....))))).....((((.((((((((.((((((...((((........)))))))))))))).)))).))))..........)))......----------- ( -18.40, z-score = -2.42, R) >consensus _____UAUAUCUGCCGCUAAUUUUUGUCUUUCCCGUCCUAUAGACGGAAUUAUAAAUC_UCUCGUGGCGUCAACGAAAAUGAAAGAAAAACAUCUACUAAUUCGCUGGCAAA ............(((((.....(((((..((((.(((.....)))))))..))))).......)))))((((.((((.......................)))).))))... (-12.15 = -14.40 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:08 2011