| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,273,026 – 10,273,123 |
| Length | 97 |
| Max. P | 0.554811 |
| Location | 10,273,026 – 10,273,123 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 88.45 |
| Shannon entropy | 0.22505 |
| G+C content | 0.44272 |
| Mean single sequence MFE | -26.30 |
| Consensus MFE | -20.20 |
| Energy contribution | -19.28 |
| Covariance contribution | -0.91 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10273026 97 + 27905053 AAAAAAAACCAGACAAAAAGCACAAGAGGCGAUAUUGAUAGGCGCAAUUAAUUAUACGCGCCUCACACUGACAGUAAGCGUUUUGCUUUGGUGGCAC .......(((((((((((.((....((((((..((((((.......))))))......))))))..((.....))..)).))))).))))))..... ( -23.90, z-score = -1.65, R) >droSim1.chr3R 16333051 97 - 27517382 AAAAAAAACCAGACAAAAAGCACAAGAGGCGAUAUUGAUAGGCGCAAUUAAUUAUACGCGCCUCACACUGACAGUAAGCGUUUUGCUUUGGUGGCAC .......(((((((((((.((....((((((..((((((.......))))))......))))))..((.....))..)).))))).))))))..... ( -23.90, z-score = -1.65, R) >droSec1.super_0 9352379 97 - 21120651 AAAAAAAACCAUACAAAAAGCACAAGAGGCGAUAUUGAUAGGCGCAAUUAAUUAUACGCGCCUCACACUGUCAGUAAGCGUUUUGCUUUGGUGGCAC ........((((....((((((..(((.((..(((((((((((((............))))))......))))))).)).))))))))).))))... ( -28.50, z-score = -3.06, R) >droYak2.chr3R 12665698 97 - 28832112 AAAAAAAGCCAGAGAAAAAGCACAAGAGGCGAUAUUGAUAGGCGCAAUUAAUUAUACGUGCCUCACACUGACAGUAAGCGUUUUGCUUUGGUGGCAC .......((((.....((((((..(((.((..(((((...(((((............)))))((.....))))))).)).)))))))))..)))).. ( -24.70, z-score = -1.50, R) >droEre2.scaffold_4770 9805571 97 + 17746568 AAAAAACGCCAGACAAAAAGCACAAGAGGCAAUAUUGAUAGGCGCAAUUAAUUAUGCGCGCCUCACACUGACAGUAAGCGUUUUGCUUUGGUGGCAC ......((((((((((((.((....(((((.((....))..(((((........))))))))))..((.....))..)).))))).))))))).... ( -29.40, z-score = -2.44, R) >droAna3.scaffold_13340 444981 92 + 23697760 ----AAAUAAAGGCUGGAGGCAAGAGCAGCCGCAUUGAUAGGCGCAAUUAAUUAUGCGCGCCUCGCACUGACAGUAAGCGUUUGGCUUCGG-AGCGC ----.......(((((..........)))))((.((((...(((((........)))))(((.(((((.....))..)))...))).))))-.)).. ( -27.40, z-score = 0.70, R) >consensus AAAAAAAACCAGACAAAAAGCACAAGAGGCGAUAUUGAUAGGCGCAAUUAAUUAUACGCGCCUCACACUGACAGUAAGCGUUUUGCUUUGGUGGCAC ...................((....(((((((.......((((((............)))))).((.((.......)).)).)))))))....)).. (-20.20 = -19.28 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:06 2011