| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,256,393 – 10,256,483 |
| Length | 90 |
| Max. P | 0.724968 |
| Location | 10,256,393 – 10,256,483 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 81.55 |
| Shannon entropy | 0.35219 |
| G+C content | 0.44611 |
| Mean single sequence MFE | -22.20 |
| Consensus MFE | -14.66 |
| Energy contribution | -14.82 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10256393 90 - 27905053 AAAGGCGCAACAGGAAACACGUACAC--------------------ACGGCAAUCGACGUCAUGAGUGCGUAUUAUAUCAUUUUGAUAGGCAAAUGAGGCUUGAAAGCCG ...(((((....(....).(((....--------------------)))))..(((((.((((...(((.(((((........))))).))).)))).).))))..))). ( -26.70, z-score = -2.92, R) >droSim1.chr3R 16316033 90 + 27517382 AAAGGCGCAACAGGAAACACGUACAC--------------------ACGGCAAUCGACGUCAUGAGUGCGUAUUAUAUCAUUUUGAUAGGCAAAUGAGGCUUGAAAGCCG ...(((((....(....).(((....--------------------)))))..(((((.((((...(((.(((((........))))).))).)))).).))))..))). ( -26.70, z-score = -2.92, R) >droSec1.super_0 9335984 90 + 21120651 AAAGGCGCAACAGGAAACACGUACAC--------------------ACGGCAAUCGACGUCAUAAGUGCGUAUUAUAUCAUUUUGAUAGGCAAAUGAGGCUUGAAAGCCG ...(((((....(....).(((....--------------------)))))..(((((.((((...(((.(((((........))))).))).)))).).))))..))). ( -25.60, z-score = -2.98, R) >droYak2.chr3R 12648307 90 + 28832112 AAAGGCGCAACAGGAAACACGUACAC--------------------ACGGCAAUCGACGUCAUGAGUGCGUAUUAUAUCAUUUUGAUAGGCAAAUGAGGCUUGAAAGCCG ...(((((....(....).(((....--------------------)))))..(((((.((((...(((.(((((........))))).))).)))).).))))..))). ( -26.70, z-score = -2.92, R) >droEre2.scaffold_4770 9789167 90 - 17746568 AAAGGCGCAACAGGAAACACGUACAC--------------------ACGGCAAUCGACGUCAUGAGUGCGUAUUAUAUCAUUUUGAUAGGCAAAUGAGGCUUGAAAGCCG ...(((((....(....).(((....--------------------)))))..(((((.((((...(((.(((((........))))).))).)))).).))))..))). ( -26.70, z-score = -2.92, R) >droAna3.scaffold_13340 430206 89 - 23697760 -AAGGCGCAACAGGAAACACGUACAC--------------------UUGGCGAUCGACGUCAUGAGUGCGUAUUAUAUCACUUUGAUAGGCAAAUGAGGCUUGAAAGCCG -..(((((....(....).((.....--------------------.))))..(((((.((((...(((.(((((........))))).))).)))).).))))..))). ( -24.50, z-score = -1.56, R) >droWil1.scaffold_181089 2331198 89 + 12369635 --------AACAGGAAACACGUACA------------GCCAAGAA-AAAGCCAUCGACGUCAUGAGUGCGUAUUAUAUCAUUUUGAUAGGCAAAUGAGGCUUGAAAGCUG --------....(....).....((------------((......-.(((((.......((((...(((.(((((........))))).))).)))))))))....)))) ( -21.11, z-score = -1.71, R) >dp4.chr2 16310163 110 - 30794189 GAAAGAGAAACAGGAAACACGUACACACAGAGCCAUCGCCAUCAACAUCGCCAUCGACGUCAUGAGUGCGUAUUAUAUCAUUUUGAUAGGCAAAUGAGGCUUGAAAGCCG ............(....).............(((..(((..(((((.(((....))).))..)))..))).....((((.....)))))))......((((....)))). ( -20.80, z-score = 0.11, R) >droPer1.super_0 7733956 110 + 11822988 GAAAGAGGAACAGGAAACACGUACACACAGAGCCAUCGCCAUCAACAUCGCCAUCGACGUCAUGAGUGCGUAUUAUAUCAUUUUGAUAGGCAAAUGAGGCUUGAAAGCCG ......((....(....)...........(((((.............(((....)))..((((...(((.(((((........))))).))).))))))))).....)). ( -22.40, z-score = -0.13, R) >droVir3.scaffold_13047 4557634 79 + 19223366 ---------ACAGGAAACACGUAC----------------------AACACAAUCGACGUCAUGAACGCAUAUUAUAUCAUUUUGAUAGGCAAAUGAGGCUUGAAAGCCG ---------...(....)......----------------------.............((((....((.(((((........))))).))..))))((((....)))). ( -13.10, z-score = -0.74, R) >droMoj3.scaffold_6540 16029256 85 + 34148556 ---AGACACGCAGGAAACACGUAC----------------------AGCACGUUCGACGUCAUAAACGCAUAUUAUAUCAUUUUGAUAGGCAAAUGAGGCUUGAAAGCCG ---.(((.....(....)((((..----------------------...)))).....)))......((.(((((........))))).))......((((....)))). ( -16.90, z-score = -0.84, R) >droGri2.scaffold_14830 5303162 84 - 6267026 ---AGAAACACAGGAAACACGUAC----------------------ACCGCGAUCGACGUCAUGAACGCAUAUUAUCUCAUUUUGAUAGGCAAAUGAGGCUUGAAAGCC- ---.........(....)......----------------------...((..(((((.((((....((.(((((........))))).))..)))).).))))..)).- ( -15.20, z-score = -0.28, R) >consensus _AAGGCGCAACAGGAAACACGUACAC____________________ACGGCAAUCGACGUCAUGAGUGCGUAUUAUAUCAUUUUGAUAGGCAAAUGAGGCUUGAAAGCCG ............(....)...............................((..(((((.((((....((.(((((........))))).))..)))).).))))..)).. (-14.66 = -14.82 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:04 2011