| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,248,365 – 10,248,456 |
| Length | 91 |
| Max. P | 0.883789 |
| Location | 10,248,365 – 10,248,456 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 91.73 |
| Shannon entropy | 0.11100 |
| G+C content | 0.42460 |
| Mean single sequence MFE | -23.33 |
| Consensus MFE | -18.80 |
| Energy contribution | -18.80 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10248365 91 - 27905053 UGGAUCUGGCUAUGACCUUCAAUGGUCAUUUGUUCAAAAACAAAGCGAGCUGGCAAAAGGUCCGCUGGCUUACCAAAAAUACAACACCAAA (((.....(((((((((......))))))(((((....))))))))((((..((.........))..)))).)))................ ( -24.50, z-score = -2.11, R) >droSec1.super_0 9328163 84 + 21120651 UGGAUCUGGCUAUGACCUUCAAUGGUCAUUUGUUCAAAAACAAAGCGAGCU-------GGUCCGAGGGCUUACCAAAAAUACAACAACAAU .(((((.((((.(((((......)))))((((((....))))))...))))-------)))))..((.....))................. ( -22.70, z-score = -2.53, R) >droSim1.chr3R 16308047 84 + 27517382 UGGAUCUGGCUAUGACCUUCAAUGGUCAUUUGUUCAAAAACAAAGCGAGCU-------GGUCCGCGGGCUUACCAAAAAUACAACAACAAU .(((((.((((.(((((......)))))((((((....))))))...))))-------)))))..((.....))................. ( -22.80, z-score = -2.49, R) >consensus UGGAUCUGGCUAUGACCUUCAAUGGUCAUUUGUUCAAAAACAAAGCGAGCU_______GGUCCGCGGGCUUACCAAAAAUACAACAACAAU (((..((.(((((((((......))))))(((((....)))))))).)).........((((....))))..)))................ (-18.80 = -18.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:15:00 2011