| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,236,123 – 10,236,223 |
| Length | 100 |
| Max. P | 0.682192 |
| Location | 10,236,123 – 10,236,223 |
|---|---|
| Length | 100 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 77.38 |
| Shannon entropy | 0.46163 |
| G+C content | 0.53117 |
| Mean single sequence MFE | -29.49 |
| Consensus MFE | -13.48 |
| Energy contribution | -13.41 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.682192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10236123 100 - 27905053 CCUGCCUCUUCCAGGCCACCAUUCCAUUGCAAUCGUUUUACCUUGAUUGCGGACGCAACGAGGCA---------UCGCCGGCAACCAAAUCGAA---UGUUGCCUAUAUGCG ((.((((.....))))............(((((((........))))))))).((((....(((.---------..)))((((((.........---.))))))....)))) ( -28.90, z-score = -2.01, R) >droSim1.chr3R 16295843 100 + 27517382 CCUGCCUCUUCCAGGCCACCAUUCCAUUGCAAUCGUUUUACCUUGAUUGCGGACGCAACGAGGCA---------UCGCCGGCAACCAAAUCGAA---UGUUGCCUAUAUGCG ((.((((.....))))............(((((((........))))))))).((((....(((.---------..)))((((((.........---.))))))....)))) ( -28.90, z-score = -2.01, R) >droSec1.super_0 9315917 100 + 21120651 CGUGCCUCUUCCAGGCCACCAUUCCAUUGCAAUCGUUUUACCUUAAUUGCGGACGCAACGAGGCA---------UCGCCGGCAACCAAAUCGAA---UGUUGCCUAUAUGCG .(((((((.....((........)).((((..((((..(......)..))))..)))).))))))---------)(((.((((((.........---.)))))).....))) ( -24.70, z-score = -0.54, R) >droYak2.chr3R 12627583 100 + 28832112 CUUGCCUCUUCCAGGCCACCAUUCCAUUGCAAUCGUUUUACCUUGAUUGCGGACGCAACGAGGCA---------UCGCCGGCAACCAAAUCGAA---UGUUGCCUAUAUGCG ...((((.....))))......(((...(((((((........))))))))))((((....(((.---------..)))((((((.........---.))))))....)))) ( -28.60, z-score = -1.91, R) >droEre2.scaffold_4770 9769698 100 - 17746568 CUUGCCUCUUCCAGGCCACCAUUCCAUUGCAAUCGUUUUACCUUGAUUGCGGACGCAACGAGCCA---------UCGCCGGCAACCAAAUCGAA---UGUUGCCUAUAUGCG ...((((.....))))......(((...(((((((........))))))))))((((.(((....---------)))..((((((.........---.))))))....)))) ( -26.90, z-score = -1.97, R) >droAna3.scaffold_13340 413615 90 - 23697760 -UUGUUCCUUUCAGGCCACCAUUCCACUGCAGUCGUUUAACCUUGAUUGCGGACGCAGCGAGGCA------------------GCCAAAUCGAAUGUUG---CCUACAUGCG -............((........)).(((((((((........))))))))).((((...(((((------------------((..........))))---)))...)))) ( -27.50, z-score = -1.89, R) >dp4.chr2 16288712 100 - 30794189 ---------ACCAGGCCACCAUUCCACUGCAAUCGUUUAACCUUGAUUGCGGACGCAGCGAAGCGACGAUGCUGCCAGCA---GCCAAAUCGAAUGCUCUCGCCUAUAUGCG ---------....((........)).(((((((((........))))))))).((((((((((((.((((((((....))---))...))))..)))).)))).....)))) ( -31.50, z-score = -2.22, R) >droPer1.super_0 7712626 103 + 11822988 ---------ACCAGGCCACCAUUCCACUGCAAUCGUUUAACCUUGAUUGCGGACGCAGCGAAGCGACGAUGCUGCCAGCAGCCGCCAAAUCGAAUGCUGUCCCCUAUAUGCG ---------...(((.............(((((((........)))))))((((((((((.........)))))).((((..((......))..)))))))))))....... ( -28.50, z-score = -1.06, R) >droWil1.scaffold_181089 2311615 96 + 12369635 ----UUGCUUGCAGGCAACCAUUCCAUUGCAAUCGUUUAACCUUGAUUGCGGACGCAACGAGACG---------ACGGCGACAACCAAAUCGAA---UGUUGCCUACAUGCG ----..((.((.(((((((.((((..(((((((((........))))))))).(((..((...))---------...)))...........)))---)))))))).)).)). ( -30.40, z-score = -2.94, R) >droVir3.scaffold_13047 4537505 92 + 19223366 --UCUCUCUUGCAGGCAACCAUUCCACUGCAAUCGUUUAACCUUGAUUGCGGACGCAGCGAG---------------GUGGUCGCCAAGCCGAA---CGUUGCCUACAUGCG --.......((.(((((((..(((..(((((((((........))))))))).....((..(---------------((....)))..)).)))---.))))))).)).... ( -29.50, z-score = -1.38, R) >droMoj3.scaffold_6540 16007277 92 + 34148556 --UCUCUGUUGCAGGCAACCAUUCCACUGCAAUCGUUCAACCUUGAUUGCGGACGCAGCGAG---------------GUGGCUGCCAAGCCGAG---CAUUGCCUAUAUGCG --((((.(((((.(....).......(((((((((........)))))))))..))))))))---------------)(((((....))))).(---(((.......)))). ( -32.80, z-score = -1.65, R) >droGri2.scaffold_14830 5282576 100 - 6267026 UCUGCGUGUUGCAGGCAACCAUUCCAUUGCAAUCGUUUAACCUUGAUUGCGGACGCAACGAGG------------CAGCAGCAGCCAAGCCAAAAGUUGUUGCCUAUAUGCG ...(((((((((.(....)...(((...(((((((........)))))))))).))))).(((------------(((((((.............))))))))))..)))). ( -35.72, z-score = -2.32, R) >consensus __UGCCUCUUCCAGGCCACCAUUCCAUUGCAAUCGUUUAACCUUGAUUGCGGACGCAACGAGGCA_________UCGGCGGCAACCAAAUCGAA___UGUUGCCUAUAUGCG ............((((..........(((((((((........))))))))).((...)).........................................))))....... (-13.48 = -13.41 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:53 2011