| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,420,304 – 7,420,394 |
| Length | 90 |
| Max. P | 0.536000 |
| Location | 7,420,304 – 7,420,394 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 89.33 |
| Shannon entropy | 0.18869 |
| G+C content | 0.49226 |
| Mean single sequence MFE | -24.24 |
| Consensus MFE | -21.16 |
| Energy contribution | -21.08 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.536000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7420304 90 + 23011544 UCAGAAGCUGGCCGAGGGGGCUUCCUCUCGAACUGCAUAAAAUACUGCGCACAGUGGGCCGAGAUCAAAAGAUUACUUACUAAACGAUCA ........(((((((((((....)))))).............(((((....)))))))))).((((...................)))). ( -23.51, z-score = -0.83, R) >droSim1.chr2L 7210966 90 + 22036055 UCAGAAGCAGGCCGAGGGGGCUUCCUCUCGAACUGCAUAAAAUACUGCGCACAGUGGGCCGAGAUCAAAAGAUUACUUACUAAACGAUCA ...((.((((..(((((((....)))))))..))))...........((...((((((....((((....)))).))))))...)).)). ( -25.60, z-score = -1.66, R) >droSec1.super_3 2935602 90 + 7220098 UCAGAAGCAGGCCGAGGGGGCUUCCUUUCGAACUGCAUAAAAUACUGCGCACAGUGGGCCGAGAUCAAAAGAUUACUUACAAAACGAUCA ((....((((..(((((((....)))))))..))))......(((((....)))))....))((((...................)))). ( -22.91, z-score = -1.14, R) >droYak2.chr2L 16844833 90 - 22324452 UCAGGAGCAGGACGAGGGGGCUGCCCCUAGAACUGCAUAAAAUACUGCGCACAGUGGUCCGAGACCAAAAGAAUACUUUUUAAACGAUCA ...(((((((..(.(((((....))))).)..))))......(((((....))))).)))((....(((((....))))).......)). ( -24.00, z-score = -1.24, R) >droEre2.scaffold_4929 16338558 89 + 26641161 UAAGGAGCAUGGCGAGGGGGCAGCCCCUCGAACUGCAUAAAAUACAGCGCACAGUGGGCCGAGACCAAAAGAAUAUAUCCUAA-CGAUCA ..(((((((...(((((((....)))))))...)))........(.((.(.....).)).)................))))..-...... ( -25.20, z-score = -1.32, R) >consensus UCAGAAGCAGGCCGAGGGGGCUUCCUCUCGAACUGCAUAAAAUACUGCGCACAGUGGGCCGAGAUCAAAAGAUUACUUACUAAACGAUCA ...((.((((..(((((((....)))))))..))))......(((((....)))))........))........................ (-21.16 = -21.08 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:39 2011