| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,217,720 – 10,217,815 |
| Length | 95 |
| Max. P | 0.997333 |
| Location | 10,217,720 – 10,217,815 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 82.98 |
| Shannon entropy | 0.27993 |
| G+C content | 0.38774 |
| Mean single sequence MFE | -24.50 |
| Consensus MFE | -17.49 |
| Energy contribution | -19.18 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.40 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.00 |
| SVM RNA-class probability | 0.996907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10217720 95 + 27905053 UUUUGAUGUCACACCGCAUAUUGGAAACAAUCGUACAUCUUAGUGUCGGUUUAUUAACAGAUACAUGUUCAGGUAAUGCGGCGUCAAUCAAACAA .((((((...((.((((((..((....))(((..((((....(((((.(((....))).)))))))))...))).)))))).))..))))))... ( -26.60, z-score = -3.25, R) >droSim1.chr3R 16278964 95 - 27517382 UUUUGAUUUCACACCGCAUAUUGGAAACAAUCGUACAUCUUAGUGUCGGAUUAUUAACAGACACUUGUUCAGGUAAUGCGGCGUCAAUCAAUCAA ..((((((..((.((((((((((....))))..(((.....((((((............)))))).......))))))))).)).)))))).... ( -26.70, z-score = -3.82, R) >droSec1.super_0 9297689 95 - 21120651 UUUCGAUUUCACACCGCAUAUUGGAAACAAUCGUACAUCUUAGUGUCGGAUUAUUAACAGACACUUGUUUAGGUAAUGCGGCGUCAAUCAAAUAA ....((((..((.((((((((((....)))).....((((.((((((............)))))).....)))).)))))).)).))))...... ( -25.50, z-score = -3.52, R) >droEre2.scaffold_4770 9752138 73 + 17746568 UUCUGAUUUCACACCGCAUAGUGGAAACAAUCGUACAUCUCAGUGU----------------------UCAGGUAAUGCGGCGUCAAUCAAUCAA ...(((((..((.((((((..((....))(((..((((....))))----------------------...))).)))))).)).)))))..... ( -19.20, z-score = -3.00, R) >consensus UUUUGAUUUCACACCGCAUAUUGGAAACAAUCGUACAUCUUAGUGUCGGAUUAUUAACAGACACUUGUUCAGGUAAUGCGGCGUCAAUCAAACAA ....(((...((.((((((((((....))))..(((.....((((((............)))))).......))))))))).))..)))...... (-17.49 = -19.18 + 1.69)
| Location | 10,217,720 – 10,217,815 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 82.98 |
| Shannon entropy | 0.27993 |
| G+C content | 0.38774 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -18.09 |
| Energy contribution | -20.15 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.44 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.08 |
| SVM RNA-class probability | 0.997333 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10217720 95 - 27905053 UUGUUUGAUUGACGCCGCAUUACCUGAACAUGUAUCUGUUAAUAAACCGACACUAAGAUGUACGAUUGUUUCCAAUAUGCGGUGUGACAUCAAAA ...(((((((.(((((((((.....((((((((((.(.(((............))).).)))))..))))).....))))))))).).)))))). ( -24.30, z-score = -2.54, R) >droSim1.chr3R 16278964 95 + 27517382 UUGAUUGAUUGACGCCGCAUUACCUGAACAAGUGUCUGUUAAUAAUCCGACACUAAGAUGUACGAUUGUUUCCAAUAUGCGGUGUGAAAUCAAAA ....((((((.(((((((((.....(((((((((((.(........).))))))............))))).....)))))))))..)))))).. ( -27.80, z-score = -3.92, R) >droSec1.super_0 9297689 95 + 21120651 UUAUUUGAUUGACGCCGCAUUACCUAAACAAGUGUCUGUUAAUAAUCCGACACUAAGAUGUACGAUUGUUUCCAAUAUGCGGUGUGAAAUCGAAA ...(((((((.(((((((((.....(((((((((((.(........).))))))............))))).....)))))))))..))))))). ( -28.00, z-score = -4.23, R) >droEre2.scaffold_4770 9752138 73 - 17746568 UUGAUUGAUUGACGCCGCAUUACCUGA----------------------ACACUGAGAUGUACGAUUGUUUCCACUAUGCGGUGUGAAAUCAGAA ....((((((.(((((((((.....((----------------------(((..............))))).....)))))))))..)))))).. ( -20.44, z-score = -3.07, R) >consensus UUGAUUGAUUGACGCCGCAUUACCUGAACAAGUGUCUGUUAAUAAUCCGACACUAAGAUGUACGAUUGUUUCCAAUAUGCGGUGUGAAAUCAAAA ....((((((.(((((((((.....(((((((((((.(........).))))))............))))).....))))))))).).))))).. (-18.09 = -20.15 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:51 2011