| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,212,854 – 10,212,957 |
| Length | 103 |
| Max. P | 0.982323 |
| Location | 10,212,854 – 10,212,957 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 74.05 |
| Shannon entropy | 0.50190 |
| G+C content | 0.39907 |
| Mean single sequence MFE | -30.00 |
| Consensus MFE | -12.96 |
| Energy contribution | -16.25 |
| Covariance contribution | 3.29 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.982323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10212854 103 - 27905053 CUUAUAAUUGGAUUACGAUUUAUCAGCGGGUUAAUGGGCAGUUAAAGCUUGGAACUAACCUAUGCCCGUUGAUUACGAUGGUUUUAGUUUACUUUGUAGGCAC (((((((.(((((((.((((.((((((((((....((..((((.........))))..))...))))))))))......)))).)))))))..)))))))... ( -28.60, z-score = -2.52, R) >droSim1.chr3R 16274002 103 + 27517382 CUUAUAAUUGGAUUAAGAUUUAUCAGCGGGUUAAUGGGCAGUUAAAGCUUGGAACUUACCCAUGCCCGUUGAUUACGCUGGUUUUAGUUCACUUUGUAGGCAC (((((((.(((((((((((....(((((((((((((((((((....)).(((.......))))))))))))))).))))))))))))))))..)))))))... ( -37.10, z-score = -4.63, R) >droSec1.super_0 9292705 103 + 21120651 CUUAUAAUUGGAUUAAGAUUUAUCAGCGGGUUAAUGGGCAGUUAAAGCUUGGAACUAGCCUAUGUCCGUUGAUUACGAUGGUUUUAGUUCACUUUGUAGGCAC (((((((.((((((((((((.(((((((((...((((((((((.........)))).)))))).)))))))))......))))))))))))..)))))))... ( -34.60, z-score = -4.41, R) >droYak2.chr3R 12603623 103 + 28832112 CCUAUAAUAAGUUUAGGACUUAUCAGCGGGUUAAUGGGCAGUUAAAGGUAGGAACUAACCUGUGCUCUUUGAUUGCGAUAGGUUUUGUUUACAUUGUAGACAC .(((((((.....(((((((((((.((((.((((.(((((.....((((........)))).))))).))))))))))))))))))).....))))))).... ( -30.00, z-score = -2.68, R) >droEre2.scaffold_4770 9747028 103 - 17746568 CUUAUAAUGGGAUUACGACUUAUCAGCGGGCUAAUGGGCAGUUAAAGGCAGCCACUAACCUAUGCCCUUUGAUGGAGAUAGUUGUUGUCUACUUUGUAGGCAC (((((((..((((.((((((((((((.((((....((..(((...........)))..))...)))).)))))).....)))))).))))...)))))))... ( -30.00, z-score = -1.22, R) >droAna3.scaffold_13340 392278 88 - 23697760 UUUAUAAUUGAUUUAAGAUUUAUCUCCGAGCUAAU-GGCAGUUAAAACUUGGGGUAAUCGAGGAGCAAUAAAGCCUAAUGGG--CAGGCUA------------ ......((((.(((..((((...(((((((.((((-....))))...))))))).))))...)))))))..(((((......--.))))).------------ ( -19.70, z-score = -0.51, R) >consensus CUUAUAAUUGGAUUAAGAUUUAUCAGCGGGUUAAUGGGCAGUUAAAGCUUGGAACUAACCUAUGCCCGUUGAUUACGAUGGUUUUAGUUUACUUUGUAGGCAC (((((((..(((((((((((.(((....((((((((((((.....((.......))......))))))))))))..))))))))))))))...)))))))... (-12.96 = -16.25 + 3.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:49 2011