Locus 9965

Sequence ID	dm3.chr3R
Location	10,206,786 – 10,206,895
Length	109
Max. P	0.995255

overview

Window 3

Location	10,206,786 – 10,206,895
Length	109
Sequences	12
Columns	119
Reading direction	reverse
Mean pairwise identity	67.92
Shannon entropy	0.64102
G+C content	0.48087
Mean single sequence MFE	-33.54
Consensus MFE	-15.08
Energy contribution	-15.32
Covariance contribution	0.24
Combinations/Pair	1.47
Mean z-score	-2.27
Structure conservation index	0.45
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	2.78
SVM RNA-class probability	0.995255
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 10206786 109 - 27905053
GUACUUUGCAAAUUACCUCGUCGAGAAUAUGACCAGUCAGAACUACCCGAAUGGUAUGGGUCUGCCACAGCAUUGGGGUCAGUUCUGAUUCGCCAUAGUUCUCCCAUAG----------
......................(((((((((.(.((((((((((((((.((((.(.(((.....))).).)))).)))).)))))))))).).))).))))))......---------- ( -37.30, z-score =  -3.45, R)
>droWil1.scaffold_181089 2278861 95 + 12369635
UUAUUUUGCCAACUAUUUGUACGAGAACAUGAAUAGCAAAAACUAUCCAAAUGGUGAGGGCUUGCCUCAUCAUUGGGGACAAUUUUGACCACCAU------------------------
...((((((....((((..(........)..))))))))))....(((.((((((((((.....))))))))))..)))................------------------------ ( -22.70, z-score =  -1.50, R)
>droSim1.chr3R 16268055 109 + 27517382
GUACUUUGCAAAUUACCUGGUCGAGAAUAUGACCAGUCAGAACUACCCGAAUGGUGUGGGUCUGCCACAGCAUUGGGGUCAGCUCUGAUUCGCCAUAGUUCCCCCAUAG----------
..(((..((.......(((((((......)))))))(((((.((((((.((((.(((((.....))))).)))).)))).)).)))))...))...)))..........---------- ( -39.60, z-score =  -3.14, R)
>droSec1.super_0 9286849 109 + 21120651
GUACUUUGCAAAUUACCUGGUCGAGAAUAUGACCAGUCAGAACUACCCGAAUGGUGUGGGUCUGCCACAGCAUUGGGGUCAGCUCUGAUUCGCCAUAGUUCCCCCAUAG----------
..(((..((.......(((((((......)))))))(((((.((((((.((((.(((((.....))))).)))).)))).)).)))))...))...)))..........---------- ( -39.60, z-score =  -3.14, R)
>droYak2.chr3R 12597136 119 + 28832112
GUACUUUGCUAAUUACCUGGUCGAGAACAUGACCAGUCAGAACUACCCGAACGGUGUGGGUCUGCCACAGCAUUGGGGUGAGUUCUGAUUCGCCAUGCUUCCCCGCCAUUCAUCCAUUG
.................((((.(.(((((((.(.((((((((((((((.((.(.(((((.....))))).).)).)))).)))))))))).).)))).))).).))))........... ( -42.00, z-score =  -2.80, R)
>droEre2.scaffold_4770 9740001 109 - 17746568
GUACUUUGCAAAUUACCUGGUCGAGAACAUGACCAGUCAGAACUAUCCGAAUGGUGUGGGUCUGCCACAGCAUUGGGGUGAGUUCUGAUUCGCCAUAGUUCACCCAUAG----------
(.(((..((.......(((((((......)))))))((((((((((((.((((.(((((.....))))).)))).)))).))))))))...))...))).)........---------- ( -42.00, z-score =  -3.71, R)
>droAna3.scaffold_13340 386208 102 - 23697760
GUUCUUCGCCGAGUACCUCUUCGAAAACAUGACCAGUGAGAACUAUCCCAACGGUGUUGGCCUGCCGCAUCACUGGGGUGAGUUCUGAUUGAGCAUGGGUUC-----------------
....((((..(((...)))..))))..((((..((((.((((((((((((..(((((.((....)))))))..)))))).)))))).))))..)))).....----------------- ( -37.30, z-score =  -2.31, R)
>droPer1.super_0 7680744 109 + 11822988
GUACUAUGUCAAAUAUAUGGACGAACACAUGAACAGUCAGAACUAUCCGAAUGGUGUGGGCCUGCCCCAUCGCUGGGGCCAGUUCUGACUGCACAGGAUGCCCCCCGAG----------
((.((((((.....)))))))).......((..(((((((((((.(((.(.(((((.(((....)))))))).).)))..)))))))))))..))((.......))...---------- ( -36.60, z-score =  -1.51, R)
>dp4.chr2 16258633 99 - 30794189
GUACUAUGUCAAAUACAUGGACGAACACAUGAACAGUCAGAAUUAUCCGAAUGGUAUGGGCCUGCCCCAUCGCUGGGGCCAGUUCUGACUGGACCAUAG--------------------
...(((((((.....((((........))))..(((((((((((........(((....))).((((((....)))))).))))))))))))).)))))-------------------- ( -37.60, z-score =  -3.54, R)
>droMoj3.scaffold_6540 15975534 88 + 34148556
AUGCUUCGCCAACUAUCUGAUCAAGCAUAUGAAUAGCCGAAAUUAUCCGAAUGGCGAGGGAUUGCCCAAACGCUGGGGUCAGUACUGA-------------------------------
...((((((((.....(((.(((......))).))).((........))..)))))))).(((((((........))).)))).....------------------------------- ( -21.50, z-score =   0.09, R)
>droGri2.scaffold_14830 5252582 92 - 6267026
ACACUUUGCCAAUUAUAUGUACAAGCAUAUGAAUAGUCGAAACUAUCCAAAUGGUGAAGGAUUGCCGAAUCGCUGGGGUCACUUCUGAGUUG---------------------------
...(((..(((.((((((((....))))))))(((((....))))).....)))..)))((((....))))(((.(((.....))).)))..--------------------------- ( -22.40, z-score =  -1.14, R)
>droVir3.scaffold_13047 4491764 95 + 19223366
AUACUUUGCCAACUAUUUGAUAAAGCAUAUGAAUAGUCGAAACUAUCCAAAUGGCGAAGGAUUGCCAAAUCGCUGGGGCCAGUUCUGAGCUCCCA------------------------
...(((((((((((((((.(((.....)))))))))).((.....))....))))))))((((....))))...(((((((....)).)).))).------------------------ ( -23.90, z-score =  -1.07, R)
>consensus
GUACUUUGCCAAUUACCUGGUCGAGAACAUGAACAGUCAGAACUAUCCGAAUGGUGUGGGUCUGCCACAUCACUGGGGUCAGUUCUGAUUCGCCAU_GUUC__________________
...................................(((((((((..((...((((((.((....))...)))))).))..))))))))).............................. (-15.08 = -15.32 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:47 2011