| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,205,840 – 10,205,941 |
| Length | 101 |
| Max. P | 0.733183 |
| Location | 10,205,840 – 10,205,941 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 89.22 |
| Shannon entropy | 0.23442 |
| G+C content | 0.36540 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -16.02 |
| Energy contribution | -16.19 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.733183 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10205840 101 + 27905053 ----------CUGCCGCCCACAA-UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUUGGGC-AAUUGUC ----------.....(((((...-......((((....))))......((((((..(((.(((((..............))))).)))...))))))...)))))-....... ( -26.64, z-score = -2.90, R) >droYak2.chr3R 12596194 109 - 28832112 --CUCCACCGCCGCCACCCACAA-UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUUGGGC-AAUUGUC --..........(((........-......((((....)))).((...((((((..(((.(((((..............))))).)))...))))))...)))))-....... ( -23.74, z-score = -1.69, R) >droEre2.scaffold_4770 9739084 101 + 17746568 ----------CCGCCGCCCACAA-UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUUGGGC-AAUUGUC ----------.....(((((...-......((((....))))......((((((..(((.(((((..............))))).)))...))))))...)))))-....... ( -26.64, z-score = -2.87, R) >droAna3.scaffold_13340 385443 101 + 23697760 ----------CCGCCGCCCACAA-UUUAUAAGCCCUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUUGGGC-AAUUGUC ----------.....(((((...-......((((....))))......((((((..(((.(((((..............))))).)))...))))))...)))))-....... ( -25.44, z-score = -2.33, R) >droPer1.super_0 7680053 103 - 11822988 ---------GCACACGCCCACAA-UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUCUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUUUGGCCAAUUGUC ---------......(((.....-......((((....))))......((((((..(((.(((((..............))))).)))...)))))).....)))........ ( -20.24, z-score = -1.12, R) >dp4.chr2 16257943 103 + 30794189 ---------GCACACGCCCACAA-UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUCUGAUUGCAAUUAUCUUUUGCAUUCUGUAUUUAUUUGCUACACUUUUGGCCAAUUGUC ---------..(((.(((.((((-......((((....)))).....)))))))...((.(((((.......))))).)))))........((((......))))........ ( -21.60, z-score = -1.67, R) >droSec1.super_0 9285894 102 - 21120651 ---------CCAACCAGCCACAA-UUUAUAAGCCGUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUUGGGC-AAUUGUC ---------.(((..((((((((-......((((....)))).....)))))))))))..(((((.......)))))............(((((........)))-))..... ( -25.00, z-score = -2.01, R) >droSim1.chr3R 16267096 102 - 27517382 ---------CCGACCGCCCACAA-UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUUGGGC-AAUUGUC ---------......(((((...-......((((....))))......((((((..(((.(((((..............))))).)))...))))))...)))))-....... ( -26.64, z-score = -3.20, R) >droWil1.scaffold_181089 2277477 113 - 12369635 CUCAACCAGCCGCACACCCACAAGUUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUUUGCCCAAUUGUU .((((..(((((((.((......)).....((((....))))......))))))))))).(((((.......)))))....(((......))).................... ( -20.00, z-score = -0.56, R) >droVir3.scaffold_13047 4491239 97 - 19223366 --------------AGCCCACAA-UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGAAUUUUGUAUUUAUUUGAUACACUUU-GCCCAAUUGUA --------------((((.((((-......((((....)))).....)))))))).....(((((((.((....))....((((((.....))))))....-....))))))) ( -20.20, z-score = -2.34, R) >droGri2.scaffold_14830 5252065 106 + 6267026 -----GCUGCCACACGCCCUCAA-UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGAAUUUUGUAUUUAUUUGCUACACUUU-GCCCAGUUGUU -----((((..............-......((((....)))).((...((((((..(((.(((((...((....))...))))).)))...))))))...)-)..)))).... ( -21.30, z-score = -1.47, R) >droMoj3.scaffold_6540 15974942 97 - 34148556 --------------CGCCCACAG-UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGAAUUUUGUAUUUAUUUGCUACACUUU-GUCCAAUUGUU --------------.....((((-((....((((....))))(((...((((((..(((.(((((...((....))...))))).)))...))))))...)-))..)))))). ( -22.40, z-score = -3.02, R) >consensus __________CACCCGCCCACAA_UUUAUAAGCCUUUUGGCUACAUUUUGUGGCUUUGAUUGCAAUUAUCUUUUGCAUUUUGUAUUUAUUUGCUACACUUUGGGC_AAUUGUC ...................((((.......((((....))))......((((((..(((.(((((..............))))).)))...))))))...........)))). (-16.02 = -16.19 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:46 2011