| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,187,708 – 10,187,799 |
| Length | 91 |
| Max. P | 0.693872 |
| Location | 10,187,708 – 10,187,799 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 68.20 |
| Shannon entropy | 0.51892 |
| G+C content | 0.51834 |
| Mean single sequence MFE | -30.52 |
| Consensus MFE | -11.92 |
| Energy contribution | -10.48 |
| Covariance contribution | -1.44 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.693872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10187708 91 + 27905053 GCGGCUGUCUUUUUAUGAGUUCGACUCUGGG-----CGGCGAUCCAUAAAAUAAGUGUUUCUGUGCCGCCCGUGGCUCACAUUCGUAAUGCCUUAU---------- ..(((.......((((((((..((((.((((-----((((((..(((.......)))..))...)))))))).)).))..)))))))).)))....---------- ( -29.80, z-score = -2.39, R) >droSim1.chr3R 16249516 91 - 27517382 GCGGCUGUCUUUUUAUGAGUUCGACUCUGGG-----CGGCGAUCCAUAAAAUAAGUGUUUCUGUGCCGCUCGUGGCUCAUAUUCGUAAUGCCUUAU---------- ..(((.......((((((((..((((.((((-----((((((..(((.......)))..))...)))))))).)).))..)))))))).)))....---------- ( -27.70, z-score = -2.09, R) >droSec1.super_0 9267940 91 - 21120651 GCGGCUGUCUUUUUAUGAGUUCGACUCUGGG-----CGGCGAUCCAUAAAAUAAGUGUUUCUGUGCCGCUCGUGGCUCAUAUUCGUAAUGCCUUAU---------- ..(((.......((((((((..((((.((((-----((((((..(((.......)))..))...)))))))).)).))..)))))))).)))....---------- ( -27.70, z-score = -2.09, R) >droYak2.chr3R 12573609 96 - 28832112 GCGGCUGUCUUUUUAUGAGUUUGACUCUGGGACGGCUUGCGAUCCAUAAAAUAAGUGUUUCUCUGCCGCUCGUGCCUCAUAUUCGUAAUGCCUUAU---------- ..(((.......((((((((.(((..(((((.((((..(.((..(((.......)))..)).).)))))))).)..))).)))))))).)))....---------- ( -25.90, z-score = -1.78, R) >dp4.chr2 16235624 99 + 30794189 GCGGCUGCUCUUUUAUGAGCUUCGCUCAGCG-------GCGACCCAUAAAAGCUGUGCAGGCACGCCUCUGGCCGUCGUCGUCGGCGGCUUCUCUCCUCUCCUUAU ((((..((((......)))).)))).(((.(-------(((.((((((.....))))..))..)))).)))(((((((....)))))))................. ( -36.00, z-score = -1.56, R) >droPer1.super_0 7657194 99 - 11822988 GCGGCUGCUCUUUUAUGAGCUUCGCUCAGCG-------GCGACCCAUAAAAGCUGUGCAGGCACGCCUCUGGCCGUCGUCGUCGGCGGCUUCUCUCCUCUCCUUAU ((((..((((......)))).)))).(((.(-------(((.((((((.....))))..))..)))).)))(((((((....)))))))................. ( -36.00, z-score = -1.56, R) >consensus GCGGCUGUCUUUUUAUGAGUUCGACUCUGGG_____CGGCGAUCCAUAAAAUAAGUGUUUCUGUGCCGCUCGUGGCUCACAUUCGUAAUGCCUUAU__________ (((((...........((((...)))).................(((.......))).......))))).(((.((........)).)))................ (-11.92 = -10.48 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:45 2011