| Sequence ID | dm3.chr3R |
|---|---|
| Location | 10,164,415 – 10,164,478 |
| Length | 63 |
| Max. P | 0.842522 |
| Location | 10,164,415 – 10,164,478 |
|---|---|
| Length | 63 |
| Sequences | 8 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 95.06 |
| Shannon entropy | 0.09482 |
| G+C content | 0.51104 |
| Mean single sequence MFE | -19.18 |
| Consensus MFE | -17.26 |
| Energy contribution | -17.44 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842522 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 10164415 63 - 27905053 CUGCUGUGGCCGGACAUUAAGCCUUUUGGCCAUUUGCAUUGGCACUUGCCAAUUUUCCCAUCG .(((.(((((((((..........)))))))))..)))(((((....)))))........... ( -20.40, z-score = -2.15, R) >droPer1.super_0 7632973 62 + 11822988 CUGCUGUGGCCAG-CAUUAAGCCUCUCGGCCAUUUGCAUUGGCACUUGCCAAUUUUCCCAUUG .(((.((((((.(-(.....)).....))))))..)))(((((....)))))........... ( -18.80, z-score = -1.58, R) >dp4.chr2 16211313 62 - 30794189 CUGCUGUGGCCAG-CAUUAAGCCUCUCGGCCAUUUGCAUUGGCACUUGCCAAUUUUCCCAUUG .(((.((((((.(-(.....)).....))))))..)))(((((....)))))........... ( -18.80, z-score = -1.58, R) >droAna3.scaffold_13340 349901 62 - 23697760 CUGCUGUGGCCGG-CAUUAAGCCUCCUGGUCAUUUGCAUUGGCACUUGCCAAUUUUCCCAUCG .(((.((((((((-(.....)))....))))))..)))(((((....)))))........... ( -19.80, z-score = -1.96, R) >droEre2.scaffold_4770 9698002 63 - 17746568 CUGCUGUGGCCGGACAUUAAGCCUUUUGGCCAUUUGCAUUGGCACUUGCCAAUUUUCCCAUCG .(((.(((((((((..........)))))))))..)))(((((....)))))........... ( -20.40, z-score = -2.15, R) >droYak2.chr3R 12549760 63 + 28832112 CUGCUGUGGCCGGACAUUAAGCCUUUUGGCCAUUUGCAUUGGCACUUGCCAAUUUUCCCAUCG .(((.(((((((((..........)))))))))..)))(((((....)))))........... ( -20.40, z-score = -2.15, R) >droSec1.super_0 9244801 63 + 21120651 CUGCUGUGGCCGGACAUUAAGCCUUUUGGCCAUUUGCAUUGGCACUUGCCAAUUUUCCCAUCG .(((.(((((((((..........)))))))))..)))(((((....)))))........... ( -20.40, z-score = -2.15, R) >droSim1.chr3R 16225345 63 + 27517382 CUGCUGUGACCGGACAUUAAGCCUUUUGGCCAUUUGCAUUGGCACUUGCCAAUUUUCCCAUCG .......((..(((......(((....))).......((((((....))))))..)))..)). ( -14.40, z-score = -0.88, R) >consensus CUGCUGUGGCCGGACAUUAAGCCUUUUGGCCAUUUGCAUUGGCACUUGCCAAUUUUCCCAUCG .(((.((((((((............))))))))..)))(((((....)))))........... (-17.26 = -17.44 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:14:43 2011