| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,416,203 – 7,416,295 |
| Length | 92 |
| Max. P | 0.524607 |
| Location | 7,416,203 – 7,416,295 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 92.99 |
| Shannon entropy | 0.12374 |
| G+C content | 0.60848 |
| Mean single sequence MFE | -34.72 |
| Consensus MFE | -32.30 |
| Energy contribution | -32.70 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524607 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 7416203 92 + 23011544 CCUCUGGGCCGGGUCCGGGAAUUUCUGAUU------CUGAUACUGCGUCUGCGCCUGCUCCACAAAACUGCGAUUGCCCGGGCUGGGCCAGGAAAAUC ..(((.((((.((((((((....((.....------........(((....)))..((...........))))...)))))))).)))).)))..... ( -34.60, z-score = -1.38, R) >droSim1.chr2L 7205199 91 + 22036055 CCUCUGGGCCGGGUCCGGGAAUUUCUGAUU------CUGAUACUGCGUCUGCGCCUGCUCCACAAA-CUGCGAUUGCCCGGGCUGGGCCAGGAAAAUC ..(((.((((.((((((((....((.....------........(((....)))..((........-..))))...)))))))).)))).)))..... ( -34.70, z-score = -1.41, R) >droSec1.super_3 2931428 91 + 7220098 CCUCUGGGCCGGGUCCGGGAAUUUCUGAUU------CUGAUACUGCGUCUGCGCCUGCUCCACAAA-CUGCGAUUGCCCGGGCUGGGCCAGGAAAAUC ..(((.((((.((((((((....((.....------........(((....)))..((........-..))))...)))))))).)))).)))..... ( -34.70, z-score = -1.41, R) >droYak2.chr2L 16840232 98 - 22324452 CCUCUGGGCCGGGUCCGGGAAUUUCUGAUUGCGAUUCCGAUUCUGCGUCUGCGCCUGCUCCACAAAGCUGCGAUUGCCCGGGCUGGGCCAGGAAAAUC ..(((.((((.((((((((.......(((((((...........(((....)))..(((......)))))))))).)))))))).)))).)))..... ( -38.70, z-score = -0.95, R) >droEre2.scaffold_4929 16334078 85 + 26641161 CCUCUGGGCCGGGUGCGGGAAUUUCUGAUU------CUG------CGUCUGCGCCUGCUCCACAAA-CUGCGAUUGCCCGGGCUGGGCCAGGAAAAUC ..(((.((((.(((.((((....((.....------..(------((....)))..((........-..))))...)))).))).)))).)))..... ( -30.90, z-score = -0.19, R) >consensus CCUCUGGGCCGGGUCCGGGAAUUUCUGAUU______CUGAUACUGCGUCUGCGCCUGCUCCACAAA_CUGCGAUUGCCCGGGCUGGGCCAGGAAAAUC ..(((.((((.((((((((....((...................(((....)))..((...........))))...)))))))).)))).)))..... (-32.30 = -32.70 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:38 2011